Citrus Sinensis ID: 013845

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-----
Protein Sequence
MMLQMHSSSSFSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLFNLMFEFEIKFTQVRLFSSRLTSNYFVEFAVVLC
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccEEEcccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHcccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccHHHccccccccccEEEccccccccccccEEEEEcccccEEEEEEEEEEcccccccccccccEEEEEEccccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHEEEEHHccccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHEccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEccccccccEEEEEEEEc
Coil and Loop (DISEMBL)
mmlqmhssssfspkyyyplqhagcdktlqlpltkvhgglnrsesknyaikctqsdsfystnkiknnentssrnckpfnkYRVAVTLQQqgcasnneddinstSFWDVLLKKLHALYVftrpfamigTIVGITSIailplqsfadltPKYFMEFLKALLSAVLMNNYVGTVNQVADVeidkvnkpdlplasgdlsmgTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGtaysvdlpflrwktkpflagmCMVTVFGLVYQFSFFIHFQKyvlgrpvvitRPLIFAAAIISTISAVMSLLkdipdedgdkqfgfqsissklgkenVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVdlsnnastysFYMFIWKASVIDLFNLMFEFEIKFTQVRLFSSRLTSNYFVEFAVVLC
Flexible Loop (DISEMBL)
mmlqmhssssfspKYYYPLQHAGCDKTLQLPLTKVHGglnrsesknyaikctqsdsfystnkiknnentssrnckpFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSissklgkenVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLFNLMFEFEIKFTQVRLFSSRLTSNYFVEFAVVLC
Low Complexity Region (SEG)
MMLQMHssssfsPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGlaitltlsltslaialslQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLifaaaiistisaVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLFNLMFEFEIKFTQVRLFSSRLTSNYFVEFAVVLC
Disordered region (IsUnstruct)
*************KYYYPLQHAGCDKTLQLPLTKVHGGLN*****NYAIKCT**********************KPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDE***KQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLFNLMFEFEIKFTQVRLFSSRLTSNYFVEFAVVL*
Disordered Region (DISOPRED)
***************************LQLPLT***************************************************************************LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLFNLMFEFEIKFTQVRLFSSRLTSNYFVEFAVVLC
Disordered Region (DISEMBL)
***********SPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLFNLMFEFEIKFTQVRLFSSRLTSNYFVEFAVVLC
Disordered Region (DISPRO)
**********FSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCA*N***DINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLFNLMFEFEIKFTQVRLFSSRLTSNYFVEFAVVLC
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMLQMHSSSSFSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLFNLMFEFEIKFTQVRLFSSRLTSNYFVEFAVVLC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	435	2.2.26 [Sep-21-2011]
Q8VWJ1	393	Homogentisate phytyltrans	yes	no	0.8	0.885	0.421	1e-74
B7FA90	404	Probable homogentisate ph	no	no	0.827	0.891	0.389	3e-73
B1B3P3	410	Naringenin 8-dimethylally	N/A	no	0.781	0.829	0.371	7e-64
B9A1Q4	409	Glycinol 4-dimethylallylt	no	no	0.680	0.723	0.395	2e-56
Q1ACB3	386	Homogentisate phytyltrans	no	no	0.705	0.795	0.288	3e-24
Q0D576	379	Probable homogentisate ph	no	no	0.629	0.722	0.274	1e-20
B1L6Z7	281	Digeranylgeranylglyceryl	yes	no	0.445	0.690	0.266	2e-06
A3CW74	279	Digeranylgeranylglyceryl	yes	no	0.425	0.663	0.290	2e-06
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.427	0.615	0.269	4e-06
Q9UWY6	282	Digeranylgeranylglyceryl	yes	no	0.4	0.617	0.252	4e-06

>sp|Q8VWJ1|HPT1_ARATH Homogentisate phytyltransferase 1, chloroplastic OS=Arabidopsis thaliana GN=VTE2-1 PE=2 SV=1

 Score =  280 bits (717), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 152/361 (42%), Positives = 223/361 (61%), Gaps = 13/361 (3%)

Query: 41  RSESKNYAIKCTQSDSF----YSTNKIKNNENTSSRNCKPFNK--YRVAVTLQQQGCASN 94
            S S+   ++C  S       +  N ++ +   SS    P +K  +RV  T  Q     +
Sbjct: 27  HSLSEIRVLRCDSSKVVAKPKFRNNLVRPDGQGSSLLLYPKHKSRFRVNATAGQPEAFDS 86

Query: 95  NEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFL 154
           N       SF D     L A Y F+RP  +IGT++ I S++ L ++  +D++P  F   L
Sbjct: 87  NSKQ---KSFRD----SLDAFYRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGIL 139

Query: 155 KALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIAL 214
           +A+++A++MN Y+  +NQ++DVEIDKVNKP LPLASG+ S+ TG+AI  + S+ S  +  
Sbjct: 140 EAVVAALMMNIYIVGLNQLSDVEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGW 199

Query: 215 SLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKY 274
            + S PL + L V F+LGTAYS++LP LRWK    +A MC++ V  ++ Q +F++H Q +
Sbjct: 200 IVGSWPLFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTH 259

Query: 275 VLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCV 334
           V GRP++ TRPLIFA A +S  S V++L KDIPD +GDK FG +S S  LG++ V   CV
Sbjct: 260 VFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCV 319

Query: 335 YALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIW 394
             L  AY V+++VGA+S F   K++S++GH  LA  LW RA++VDLS+     S YMFIW
Sbjct: 320 TLLQMAYAVAILVGATSPFIWSKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIW 379

Query: 395 K 395
           K
Sbjct: 380 K 380

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone. Tocopherol functions to limit lipid oxidation during seed desiccation, quiescence and germination and early seedling development. Protects thylakoid membrane lipids from photooxidation and is required for low-temperature adaptation.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: nEC: 8

>sp|B7FA90|HPT1_ORYSJ Probable homogentisate phytyltransferase 1, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT1 PE=2 SV=1

 Score =  275 bits (704), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 142/365 (38%), Positives = 224/365 (61%), Gaps = 5/365 (1%)

Query: 31  PLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQG 90
           PL  +H    R  S +   + TQ  SF    K    +++  R   P      +     Q 
Sbjct: 32  PLCSIHRNGKRPVSLSS--QRTQGPSFDQCQKFFGWKSSHHR--IPHRPTSSSADASGQP 87

Query: 91  CASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYF 150
             S+ E   +S+S W  +   L A Y F+RP  +IGT + I S+++L +++ +D++P + 
Sbjct: 88  LQSSAEAH-DSSSIWKPISSSLDAFYRFSRPHTVIGTALSIVSVSLLAVENLSDVSPLFL 146

Query: 151 MEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSL 210
              L+A+++A+ MN Y+  +NQ+ D+EIDKVNKP LPLASG+ S  TG+A+    +  S 
Sbjct: 147 TGLLEAVVAALFMNIYIVGLNQLFDIEIDKVNKPTLPLASGEYSPATGVALVSAFAAMSF 206

Query: 211 AIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270
            +  ++ S PL   L + F+LGTAYS++LPFLRWK    +A +C++ V  ++ Q +FF+H
Sbjct: 207 GLGWAVGSQPLFLALFISFILGTAYSINLPFLRWKRSAVVAALCILAVRAVIVQLAFFLH 266

Query: 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL 330
            Q +V  RP V TRPLIFA A ++  S V++L KDIPD +GD+ FG +S S +LG++ V 
Sbjct: 267 IQTFVFRRPAVFTRPLIFATAFMTFFSVVIALFKDIPDIEGDRIFGIKSFSVRLGQKKVF 326

Query: 331 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY 390
            +CV  L  AY V++++GA+S+    K  +++GH+ LA +LW R++++DL++  +  SFY
Sbjct: 327 WICVGLLEMAYCVAILMGATSACLWSKYATVVGHAILAAILWNRSRSIDLTSKTAITSFY 386

Query: 391 MFIWK 395
           MFIWK
Sbjct: 387 MFIWK 391

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydroquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1B3P3|N8DT1_SOPFL Naringenin 8-dimethylallyltransferase 1, chloroplastic OS=Sophora flavescens GN=N8DT-1 PE=1 SV=1

 Score =  244 bits (624), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 202/345 (58%), Gaps = 5/345 (1%)

Query: 58  YSTNKIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYV 117
           Y  N+  +  NTS + C+   KY V    +Q         D    S WD +   L   Y 
Sbjct: 65  YKVNEGGSTSNTS-KECE--KKYVVNAISEQSFEYEPQTRD--PESIWDSVNDALDIFYK 119

Query: 118 FTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 177
           F RP+AM   ++G T  +++ ++  +DL+  +F+ +L+ +++ + ++ +   +NQ+ D+E
Sbjct: 120 FCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDIE 179

Query: 178 IDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSV 237
           IDK+NKPDLPLASG LS    + IT +  +  L  A  + S PL + + +  ++ +AY+V
Sbjct: 180 IDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYNV 239

Query: 238 DLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTIS 297
           DLP LRWK  P L  +  +    +     FF+H Q  V  RP    RPLIF  AI+S  +
Sbjct: 240 DLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYA 299

Query: 298 AVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVK 357
            V++L KDIPD +GD++FG QS+S +LG + V  +CV  L   YGV+++VGA+S     K
Sbjct: 300 IVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWSK 359

Query: 358 LVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLF 402
           +++++GH+ LA +LW  A++VDL++N   +SFYMFIWK    + F
Sbjct: 360 IITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYF 404

Involved in the biosynthesis of sophoraflavanone G (SFG). Can use flavanones (naringenin, liquiritigenin and hesperetin) as substrates, but not flavonols or isoflavones. Shows a strict specificity for dimethylallyl diphosphate.

Sophora flavescens (taxid: 49840)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 7

EC: 0

>sp|B9A1Q4|G4DT_SOYBN Glycinol 4-dimethylallyltransferase OS=Glycine max GN=G4DT PE=1 SV=1

 Score =  220 bits (560), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 117/296 (39%), Positives = 175/296 (59%)

Query: 100 NSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLS 159
           N  +  D +   L A Y F+ P+ MIG  +   S ++L ++  +D++  + +  L+ +L 
Sbjct: 101 NPKNILDSVKNVLSAFYWFSYPYTMIGITLCAFSSSLLAVEKLSDISLSFLIGVLQGVLP 160

Query: 160 AVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSP 219
            + +  Y+  VNQ+ D+EIDK+NKP LP+ASG  S  TG+ I+      S        S 
Sbjct: 161 QLFIEIYLCGVNQLYDLEIDKINKPHLPMASGQFSFKTGVIISAAFLALSFGFTWITGSW 220

Query: 220 PLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRP 279
           PLI  L+V     TAYS+D+P LRWK  PF+A MCM++ + L    S+F H Q  VL RP
Sbjct: 221 PLICNLVVIASSWTAYSIDVPLLRWKRYPFVAAMCMISTWALALPISYFHHMQTVVLKRP 280

Query: 280 VVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF 339
           +   R L F  A ++  S  ++L KDIPD +GDK+ G  S + +LG++    +CV     
Sbjct: 281 IGFPRSLGFLVAFMTFYSLGLALSKDIPDVEGDKEHGIDSFAVRLGQKRAFWICVSFFEM 340

Query: 340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           A+GV ++ GAS S    K+ + +G++ LA +LW +A++VDLS+ AST SFYMFIWK
Sbjct: 341 AFGVGILAGASCSHFWTKIFTGMGNAVLASILWYQAKSVDLSDKASTGSFYMFIWK 396

Proposed to be involved in the biosynthesis of pterocarpan phytoalexins, specifically glyceollins. Can act as a prenyltransferase towards glycinol which is the direct precursor of glyceollins. Seems to be specific for prenylation at C-4 thus producing glyceollin I.

Glycine max (taxid: 3847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 3

EC: 6

>sp|Q1ACB3|HPT2_ARATH Homogentisate phytyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HPT2 PE=2 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 93/322 (28%), Positives = 160/322 (49%), Gaps = 15/322 (4%)

Query: 78  NKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAIL 137
           N  ++++    Q  A+ ++D +      D + +  +A + F RP  + GT +G T++   
Sbjct: 62  NYRKISIRACSQVGAAESDDPV-----LDRIARFQNACWRFLRPHTIRGTALGSTALVTR 116

Query: 138 PLQSFADLTP-KYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMG 196
            L     L      ++ L  LL+ +  N Y+  +NQ+ D+ IDKVNKP LP+A+GDLS+ 
Sbjct: 117 ALIENTHLIKWSLVLKALSGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQ 176

Query: 197 TGLAITLTLSLTSLAIALSLQSPPLIFGLI-VWFLLGTAYSVDLPFLRWKTKPFLAGMCM 255
           +   + +  ++  L + +     P I  L  +   LGT YSV  P LR K  P  A + +
Sbjct: 177 SAWLLVIFFAIAGL-LVVGFNFGPFITSLYSLGLFLGTIYSV--PPLRMKRFPVAAFLII 233

Query: 256 VTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQF 315
            TV G +  F  + H  +  LG P   + P+ F  + ++  + V+++ KD+PD +GD++F
Sbjct: 234 ATVRGFLLNFGVY-HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKF 292

Query: 316 GFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVK-LVSIIGHSTLAFLLWLR 374
              ++++KLG  N+  L    L   Y VS I  A    Q+ +  + I  H  LA  L  +
Sbjct: 293 QISTLATKLGVRNIAFLGSGLLLVNY-VSAISLAFYMPQVFRGSLMIPAHVILASGLIFQ 351

Query: 375 AQTVDLSN--NASTYSFYMFIW 394
              ++ +N    +   +Y FIW
Sbjct: 352 TWVLEKANYTKEAISGYYRFIW 373

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|Q0D576|HPT2_ORYSJ Probable homogentisate phytyltransferase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=HPT2 PE=3 SV=2

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 78/284 (27%), Positives = 135/284 (47%), Gaps = 10/284 (3%)

Query: 116 YVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFM-EFLKALLSAVLMNNYVGTVNQVA 174
           + F RP  + GT +G  ++    L     L   + + +    L++ +  N Y+  +NQ+ 
Sbjct: 88  WRFLRPHTIRGTALGSIALVARALIENPQLINWWLVFKAFYGLVALICGNGYIVGINQIY 147

Query: 175 DVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTA 234
           D+ IDKVNKP LP+A+GDLS+ T   + +  +    +I ++   P +     +   LGT 
Sbjct: 148 DIRIDKVNKPYLPIAAGDLSVQTAWLLVVLFAAAGFSIVVTNFGPFITSLYCLGLFLGTI 207

Query: 235 YSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIIS 294
           YSV  P  R K  P  A + + TV G +  F  + +  +  LG     + P+ F    ++
Sbjct: 208 YSV--PPFRLKRYPVAAFLIIATVRGFLLNFGVY-YATRAALGLTFQWSSPVAFITCFVT 264

Query: 295 TISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQ 354
             + V+++ KD+PD +GD+++   ++++KLG  N+  L    L   Y  ++ V       
Sbjct: 265 LFALVIAITKDLPDVEGDRKYQISTLATKLGVRNIAFLGSGLLIANYVAAIAVAFLMPQA 324

Query: 355 LVKLVSIIGHSTLA----FLLWLRAQTVDLSNNASTYSFYMFIW 394
             + V +  H+ LA    F  W+  Q     +  S Y  Y FIW
Sbjct: 325 FRRTVMVPVHAALAVGIIFQTWVLEQAKYTKDAISQY--YRFIW 366

Involved in the synthesis of tocopherol (vitamin E). Catalyzes the condensation of homogentisate and phytyl diphosphate to form dimethylphytylhydrquinone.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: n

EC: 8

>sp|B1L6Z7|DGGGP_KORCO Digeranylgeranylglyceryl phosphate synthase OS=Korarchaeum cryptofilum (strain OPF8) GN=Kcr_1480 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 99/218 (45%), Gaps = 24/218 (11%)

Query: 109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVG 168
           + KL A    +RP   + +I+G        L  + + T  Y    + A L   L+     
Sbjct: 1   MGKLGAYVEISRPKNALMSILG-------TLTGWVNSTSVYDGRLILACLIPPLVLMAGN 53

Query: 169 TVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVW 228
            +N   D EID +NKP  P+ SG +S    L I + LSL    IALS      IF   + 
Sbjct: 54  AINDYYDAEIDAINKPYRPIPSGRISKREALNIYIALSL--FGIALS------IFLGFIE 105

Query: 229 FLLGTAYSVD-LPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLI 287
           FL+ TA+S+    + RW  +  + G  +V++       +F + F     G    +T  +I
Sbjct: 106 FLIVTAFSLSWYAYARWLKRTGVPGNALVSL-----GVAFTLIFGSLAAGN---LTNKVI 157

Query: 288 FAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLG 325
             +++  T + +   +K + D  GD+  G ++I+ ++G
Sbjct: 158 IFSSVAFTSNLIREFVKAVEDLPGDRAHGVRTIAVRIG 195

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Korarchaeum cryptofilum (strain OPF8) (taxid: 374847)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|A3CW74|DGGGP_METMJ Digeranylgeranylglyceryl phosphate synthase OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=Memar_1697 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 61/210 (29%), Positives = 98/210 (46%), Gaps = 25/210 (11%)

Query: 118 FTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE 177
            TRP   +  + G+T++ I  L +   LTP   +  L  +++ +     V  +N V DVE
Sbjct: 9   ITRPHNAV--VAGLTAL-IGYLIATGTLTPPSLL--LAVIVALITAGGNV--INDVRDVE 61

Query: 178 IDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSV 237
           ID++N+PD P+ +GD+S+    A    L +  +AIA    +  L   +I   +L   Y+V
Sbjct: 62  IDRINRPDRPIPAGDISLAGARAYAAALFVGGIAIATLTTTLCLAIAIINSVIL-IVYAV 120

Query: 238 DLPFLRWKTKPFLAGMCMVTVFGLVYQF-SFFIHFQKYVLGRPVVITRPLIFAA-AIIST 295
                R K  P L  + +  + G V+ F   F   +  V        R L  AA   ++T
Sbjct: 121 -----RLKRTPVLGNVAVAYLAGSVFLFGGAFAGIEGLV--------RNLSLAAITFLAT 167

Query: 296 ISAVMSLLKDIPDEDGDKQFGFQSISSKLG 325
           I+    LLKD  D DGD   G +++   +G
Sbjct: 168 IA--RELLKDAEDVDGDAAGGARTLPMIVG 195

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) (taxid: 368407)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score = 53.1 bits (126), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 93/208 (44%), Gaps = 22/208 (10%)

Query: 128 IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLP 187
           + G  S+ I P +       K+ +  L  +L+  L+       N   D  +D VN+PD P
Sbjct: 35  LCGTVSVGIWPGE-------KWPLVLLGMVLAGPLVCGMSQAANNWCDRHVDAVNEPDRP 87

Query: 188 LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGT-AYSVDLPFLRWKT 246
           + SG +    GL I L +++ SLA+   L   P  FG  V+ +L   AYSV+   L+ ++
Sbjct: 88  IPSGRIPGRWGLYIALLMTVLSLAVGWMLG--PWGFGATVFGVLAAWAYSVEPIRLK-RS 144

Query: 247 KPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRP--VVITRPLIFAAAIISTISAVMSLLK 304
             +  G+  +   GL     +F        G P   ++T  L++A      ++     L 
Sbjct: 145 GWWGPGLVALCYEGL----PWFTGAAVLSAGAPSFFIVTVALLYAFGAHGIMT-----LN 195

Query: 305 DIPDEDGDKQFGFQSISSKLGKENVLRL 332
           D    +GD+Q G +S+   LG E   +L
Sbjct: 196 DFKALEGDRQHGVRSLPVMLGPEVAAKL 223

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|Q9UWY6|DGGGP_SULSO Digeranylgeranylglyceryl phosphate synthase OS=Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) GN=ubiA-2 PE=1 SV=1

 Score = 53.1 bits (126), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 49/194 (25%), Positives = 91/194 (46%), Gaps = 20/194 (10%)

Query: 145 LTPKYFMEFLKALLSAVLMN-----NYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGL 199
           ++ ++++E    LLSA+++       YV  +N V DVEIDK+NKP  P+ SG +S+    
Sbjct: 28  VSSQWYLELKGILLSALVVGLIAAGGYV--INDVYDVEIDKINKPYRPIPSGKISVNKAK 85

Query: 200 AITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF 259
           A+++ L +  +A+++ L    L+  L+    L   Y+ DL     K   F   + + T  
Sbjct: 86  ALSIALFIIGIALSILLNIYALVIALVTAIGL-IYYAKDL-----KKTGFYGNLLVATTT 139

Query: 260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQS 319
            L   +     F    L R ++ T    F       ++ +  ++K I D +GD     ++
Sbjct: 140 ALSIFYGGLAFFSDNWLLRIIIPTLYAFF-------LTLIREIVKGIEDYNGDSLNNVKT 192

Query: 320 ISSKLGKENVLRLC 333
           +++ LG     R+ 
Sbjct: 193 LATTLGINKSWRIA 206

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids. Can not use other prenyl donors, i.e. farnesyl diphosphate (FPP) and phytyl diphosphate. Moreover, 4-hydroxybenzoate, 1,4-dihydroxy 2-naphthoate, homogentisate, and alpha-glycerophosphate do not function as prenyl acceptor substrates.

Sulfolobus solfataricus (strain ATCC 35092 / DSM 1617 / JCM 11322 / P2) (taxid: 273057)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
296082088	398	unnamed protein product [Vitis vinifera]	0.827	0.904	0.460	4e-87
359476155	397	PREDICTED: probable homogentisate phytyl	0.829	0.909	0.456	5e-87
219842170	411	homogentisate geranylgeranyl transferase	0.891	0.944	0.448	2e-86
224143266	284	predicted protein [Populus trichocarpa]	0.652	1.0	0.545	2e-85
171190284	317	homogentisate geranylgeranyl transferase	0.662	0.908	0.517	2e-78
295656253	401	homogentisate geranylgeranyl transferase	0.891	0.967	0.436	8e-78
374461278	407	aromatic prenyltransferase [Epimedium ac	0.696	0.744	0.458	1e-75
301154114	398	Chlorophyll synthase [Musa balbisiana]	0.682	0.746	0.464	6e-75
301154093	394	Chlorophyll synthase [Musa balbisiana]	0.673	0.743	0.470	7e-75
33391138	408	homogentisic acid geranylgeranyl transfe	0.708	0.754	0.453	8e-75

>gi|296082088|emb|CBI21093.3| unnamed protein product [Vitis vinifera]

 Score =  328 bits (841), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 173/376 (46%), Positives = 239/376 (63%), Gaps = 16/376 (4%)

Query: 22  AGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFNKYR 81
           AGC +  QL + K H  L      N   KC  S+ F S+  I++    S +     N   
Sbjct: 3   AGCVQPPQLSVKKTHNFLKSCYCSN-PFKCC-SEGFSSSVNIQHLTFKSHKR----NPIH 56

Query: 82  VAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQS 141
           V+    + G  S  ED  N  S      K+L A Y+F+RP  +IGT++GITS+++LPL++
Sbjct: 57  VS---SEYGYPSKPEDQ-NHVS------KQLRAFYLFSRPHTIIGTVIGITSVSLLPLET 106

Query: 142 FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAI 201
            +DL+P +F+  LKA++ +VLMN YV  +NQ+ DVEIDKVNKP+LPLASGD SM TG  I
Sbjct: 107 ISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETGSQI 166

Query: 202 TLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL 261
                L S+ + +  QSPPL   L++ FLLGTAYS+++P LRWK  P LA  C++ V  +
Sbjct: 167 VFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIVRAI 226

Query: 262 VYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSIS 321
           V Q +FF H QK+VLGR +V T+ ++F  A +   S V++L KDIPD DGD++FG QS +
Sbjct: 227 VVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQSFT 286

Query: 322 SKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLS 381
            KLG++ V  LCV  L  AYG + ++GASSS   +K  ++  H  LA +LW+RAQ+VDLS
Sbjct: 287 VKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSVDLS 346

Query: 382 NNASTYSFYMFIWKAS 397
           +  +  SFYMFIWKAS
Sbjct: 347 SKEAVTSFYMFIWKAS 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476155|ref|XP_002282953.2| PREDICTED: probable homogentisate phytyltransferase 1, chloroplastic-like [Vitis vinifera]

 Score =  327 bits (839), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 172/377 (45%), Positives = 238/377 (63%), Gaps = 16/377 (4%)

Query: 19  LQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTNKIKNNENTSSRNCKPFN 78
           LQ  GC +  QL + K H  L      N   KC  S+ F S+  I++    S +     N
Sbjct: 24  LQQQGCVQPPQLSVKKTHNFLKSCYCSN-PFKCC-SEGFSSSVNIQHLTFKSHKR----N 77

Query: 79  KYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILP 138
              V+    + G  S  ED  N  S      K+L A Y+F+RP  +IGT++GITS+++LP
Sbjct: 78  PIHVS---SEYGYPSKPEDQ-NHVS------KQLRAFYLFSRPHTIIGTVIGITSVSLLP 127

Query: 139 LQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTG 198
           L++ +DL+P +F+  LKA++ +VLMN YV  +NQ+ DVEIDKVNKP+LPLASGD SM TG
Sbjct: 128 LETISDLSPAFFVGLLKAMVPSVLMNIYVVGLNQIFDVEIDKVNKPELPLASGDFSMETG 187

Query: 199 LAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTV 258
             I     L S+ + +  QSPPL   L++ FLLGTAYS+++P LRWK  P LA  C++ V
Sbjct: 188 SQIVFISLLMSVGMGIMFQSPPLFCALLISFLLGTAYSIEIPLLRWKRYPLLAASCILIV 247

Query: 259 FGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQ 318
             +V Q +FF H QK+VLGR +V T+ ++F  A +   S V++L KDIPD DGD++FG Q
Sbjct: 248 RAIVVQLAFFAHIQKHVLGRSIVYTKSVVFGVAFMCFFSTVIALFKDIPDVDGDREFGIQ 307

Query: 319 SISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV 378
           S + KLG++ V  LCV  L  AYG + ++GASSS   +K  ++  H  LA +LW+RAQ+V
Sbjct: 308 SFTVKLGQKKVFWLCVNMLLMAYGAATVIGASSSSMPIKFATVFCHCALALVLWVRAQSV 367

Query: 379 DLSNNASTYSFYMFIWK 395
           DLS+  +  SFYMFIWK
Sbjct: 368 DLSSKEAVTSFYMFIWK 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|219842170|dbj|BAH10642.1| homogentisate geranylgeranyl transferase [Hevea brasiliensis]

 Score =  325 bits (834), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 181/404 (44%), Positives = 256/404 (63%), Gaps = 16/404 (3%)

Query: 2   MLQMHSSSSFSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTN 61
           ML  + S   +    Y +   G   T+ +   +V+  L  S  K   I   +S S+   +
Sbjct: 1   MLHYYPSPCLNTPPKYQVLDPGQVTTVTVLKKQVNHILKESXCKKPIICSLRSLSWAKNS 60

Query: 62  K------IKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNED--DINSTSFWDVLLKKLH 113
           +      ++N    + +N  P      A+ LQ    A N+ED  DI S+S    +L+ L+
Sbjct: 61  RKKELYVLRNLRILTRKNGIP------AIFLQNNWLAPNSEDGDDICSSSKRGPILEHLN 114

Query: 114 ALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQV 173
           +LY F+RP  +IGTI+GITS+++LP+++  DL+P YF+  LKAL+ +VLMN YV  +NQ+
Sbjct: 115 SLYQFSRPHTVIGTIIGITSVSLLPVETIVDLSPTYFIGLLKALVPSVLMNIYVVGLNQL 174

Query: 174 ADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGT 233
            DVEIDKVNKP LPLASG  SM TG+ I     L SL + ++ QSPPL+  L++ F LG+
Sbjct: 175 FDVEIDKVNKPYLPLASGKFSMATGILIVSASLLLSLYMGITFQSPPLLAALLISFALGS 234

Query: 234 AYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAII 293
            YS++LPFLRWK   FLA  C++ V  +V Q +FF+H QK+VLG+ + I R L+FA A +
Sbjct: 235 VYSIELPFLRWKKHAFLAASCILIVRAMVVQLAFFVHIQKFVLGKSIFIPRSLMFATAFM 294

Query: 294 STISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSF 353
              SA ++L KDIPD +GD+ +G QS S  LG+E VL LCV  L  AYG +V+ GASS  
Sbjct: 295 CFFSAAIALFKDIPDVEGDRDYGIQSFSVSLGQERVLWLCVNMLLVAYGAAVVHGASSPS 354

Query: 354 QL--VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
            L  VKL+++IGHST+A++LW++AQ VDL++  S  SFYMFIWK
Sbjct: 355 SLLPVKLITMIGHSTIAWILWMKAQFVDLTSQKSITSFYMFIWK 398

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224143266|ref|XP_002324898.1| predicted protein [Populus trichocarpa] gi|222866332|gb|EEF03463.1| predicted protein [Populus trichocarpa]

 Score =  322 bits (826), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 155/284 (54%), Positives = 210/284 (73%)

Query: 112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVN 171
           LH+ Y F+RP  +IGT++GITS+++LP+++ ++L+P +FM  LKAL+ +VLMN YV  +N
Sbjct: 1   LHSFYQFSRPHTVIGTLIGITSVSLLPVETISELSPTFFMGLLKALVPSVLMNIYVVGLN 60

Query: 172 QVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLL 231
           Q+ DVEIDKVNKP LPLASGD SMGTG+AI     L S A+ +  QSP L   L++  +L
Sbjct: 61  QLFDVEIDKVNKPYLPLASGDFSMGTGVAIVSASLLASFAMGIMFQSPLLFSALLISCVL 120

Query: 232 GTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAA 291
           G+ YS++LPFLRWK + FLA  C++ V  +V Q +FF+H QK+VLG+  V+TR L+FA A
Sbjct: 121 GSVYSIELPFLRWKKQAFLAATCIMIVRAIVVQLAFFVHMQKFVLGKTTVVTRSLVFATA 180

Query: 292 IISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASS 351
            +   SAV++L KDIPD DGD+ +G QS S  LG+E V  LCV  L  AYG +V+VGASS
Sbjct: 181 FMCFFSAVIALFKDIPDVDGDRDYGIQSFSVSLGQERVFWLCVNMLLIAYGAAVVVGASS 240

Query: 352 SFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           +F   K ++I+GH TLAF+LWLRA++VDL++  S  SFYMFIWK
Sbjct: 241 TFLPSKFITILGHCTLAFILWLRARSVDLTSKDSITSFYMFIWK 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|171190284|gb|ACB42448.1| homogentisate geranylgeranyl transferase [Angelica gigas]

 Score =  299 bits (765), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 149/288 (51%), Positives = 200/288 (69%)

Query: 108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYV 167
           L +K+ A Y FTRP  +IG+IVGITS+++LPL SF DL+P +F+  LK ++  V +N YV
Sbjct: 17  LWRKVDAFYRFTRPHTIIGSIVGITSVSLLPLVSFEDLSPAFFVGLLKVMIPIVCVNIYV 76

Query: 168 GTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIV 227
             +NQ+ DVEIDKVNKP+LP+ASG+ SM TG AI     L S+ + +  QSPP+++ L+V
Sbjct: 77  VGLNQLYDVEIDKVNKPNLPIASGEYSMETGKAIVSAFGLMSIIMGIMFQSPPVLYCLLV 136

Query: 228 WFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLI 287
            F  GTAYS+D+P  RWK   FLA MC+V V  +  Q + F H Q+YVLGRPV+ +R L 
Sbjct: 137 CFFFGTAYSIDVPLFRWKKNAFLAAMCIVIVRAITVQLTVFYHIQQYVLGRPVLFSRSLA 196

Query: 288 FAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV 347
           FA   ++    V++L KDIPD DGD+ FG Q+I+  LGK+ V  LC+  L  AYG +V++
Sbjct: 197 FAIICMTLFVTVIALFKDIPDVDGDRDFGIQTITVTLGKKRVFWLCITILLIAYGSAVVI 256

Query: 348 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           G+SSS  L KLV++ GH  LA +LW RA +VDL +N S  SFYMFIWK
Sbjct: 257 GSSSSLLLSKLVTVTGHCILASILWSRAISVDLESNKSITSFYMFIWK 304

Source: Angelica gigas

Species: Angelica gigas

Genus: Angelica

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|295656253|gb|ADG26667.1| homogentisate geranylgeranyl transferase [Coriandrum sativum]

 Score =  297 bits (760), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 172/394 (43%), Positives = 239/394 (60%), Gaps = 6/394 (1%)

Query: 2   MLQMHSSSSFSPKYYYPLQHAGCDKTLQLPLTKVHGGLNRSESKNYAIKCTQSDSFYSTN 61
           M+Q H+    S +   P  + G    LQ P   +      +  K     C   +   +T 
Sbjct: 1   MIQAHNHPFVSCRLQNP-PNQGLITLLQRPQRHLKFSNGNTAKKLSVHSCV--NILAATL 57

Query: 62  KIKNNENTSSRNCKPFNKYRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRP 121
            I ++ +  +R  K      +  TL+ +    + +D +  T     L +K+ A Y F+RP
Sbjct: 58  SISSSRSKPTRG-KKLPGQTLCGTLEHEFVIESKDDQL--TLLQGDLWRKIDAFYRFSRP 114

Query: 122 FAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV 181
             +IGTI+GITS+++LPL S  DL+P +F+ +LKAL+ ++ MN YV  +NQ+ DVEIDKV
Sbjct: 115 HTIIGTIIGITSVSLLPLTSIGDLSPAFFVGYLKALIPSIFMNIYVVGLNQLFDVEIDKV 174

Query: 182 NKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPF 241
           NKP+LPLASG+ SMG G AI     L S A+ +  QSPP+ F L++ FL G+AYSV+LP 
Sbjct: 175 NKPNLPLASGEYSMGLGKAIVSAFGLMSFAMGIVFQSPPVFFALLICFLFGSAYSVELPL 234

Query: 242 LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMS 301
           LRWK   FLA   ++ V  +    +FF H QKYVLGRP+V  R L FA   IS  + V++
Sbjct: 235 LRWKRNAFLAAFSILMVRAITVNLAFFYHIQKYVLGRPMVFPRSLCFATVCISMFTTVIA 294

Query: 302 LLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSI 361
           L KDIPD DGD+ FG QS S  LG++ V  LC+  L  AY  ++++GASSSF L KLV++
Sbjct: 295 LFKDIPDVDGDRDFGIQSFSVCLGQKRVFWLCIGILLIAYASALVIGASSSFLLSKLVTV 354

Query: 362 IGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           IGH TLA +LW RA +V+L +N+S  SFYM IWK
Sbjct: 355 IGHCTLASILWRRANSVNLEDNSSMTSFYMSIWK 388

Source: Coriandrum sativum

Species: Coriandrum sativum

Genus: Coriandrum

Family: Apiaceae

Order: Apiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|374461278|gb|AEZ53107.1| aromatic prenyltransferase [Epimedium acuminatum]

 Score =  290 bits (741), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 139/303 (45%), Positives = 207/303 (68%)

Query: 93  SNNEDDINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFME 152
           ++  +  N  +FW  +     A Y F+RP  +IGT + I S+++L ++  +DL+P +F  
Sbjct: 92  ASEPESYNPNNFWRSMQSATDAFYRFSRPHTVIGTALSILSVSLLAIERLSDLSPLFFTG 151

Query: 153 FLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAI 212
            L+A+++A+ MN Y+  +NQ+ DVEIDKVNKP LPLASG+ S+GTG+ I    ++ S  +
Sbjct: 152 LLEAIVAALFMNIYIVGLNQLFDVEIDKVNKPYLPLASGEYSIGTGILIVAAFAVMSFWL 211

Query: 213 ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQ 272
              + S PL++ L + F+LGTAYS++LP LRWK    +A MC++ V  ++ Q +FF+H Q
Sbjct: 212 GWFVGSGPLLWALSISFILGTAYSINLPLLRWKRFALVAAMCILAVRAVIVQLAFFLHIQ 271

Query: 273 KYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRL 332
            +V  RP ++TRPLIFA A +S  S V++L KDIPD +GD  FG +S + +LG++ V  +
Sbjct: 272 TFVYRRPAILTRPLIFATAFMSFFSVVIALFKDIPDIEGDAIFGIRSFTVRLGQKRVFWI 331

Query: 333 CVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMF 392
           CVY L  AYGV+V+VGA+S   L KLV+++GH  LA +LWL A++VDL+N  +  SFYMF
Sbjct: 332 CVYLLEMAYGVAVLVGAASPSPLSKLVTVLGHVVLASILWLNAKSVDLTNKTAITSFYMF 391

Query: 393 IWK 395
           IWK
Sbjct: 392 IWK 394

Source: Epimedium acuminatum

Species: Epimedium acuminatum

Genus: Epimedium

Family: Berberidaceae

Order: Ranunculales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154114|emb|CBW30209.1| Chlorophyll synthase [Musa balbisiana]

 Score =  287 bits (735), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 138/297 (46%), Positives = 207/297 (69%)

Query: 103 SFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVL 162
           S W   L  L+A Y F+RP  +IGTI+ I S+++L ++S  D++P +    L+A+++A+ 
Sbjct: 90  SMWKSALTSLNAFYRFSRPHTVIGTIMSIISVSLLAVESLTDISPSFLTGLLEAVIAALF 149

Query: 163 MNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLI 222
           MN Y+  +NQV D+EIDKVNKP+LPLASG+ S+ TG+A+ LT +  S  +A  + S PL 
Sbjct: 150 MNIYIVGLNQVYDIEIDKVNKPNLPLASGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLF 209

Query: 223 FGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVI 282
           + L + F+LGTAYSV+LPFLRWK    +A +C++ V  +V Q +FF+H Q +V  R V  
Sbjct: 210 WALFISFILGTAYSVNLPFLRWKRFAVVAAVCILAVRAVVVQLAFFLHMQTFVFRRSVSF 269

Query: 283 TRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342
           +RPLIFA A +S  S V++L KDIPD +GD+ +G +S S +LG++ V  +CVY L  AY 
Sbjct: 270 SRPLIFATAFMSFFSVVIALFKDIPDIEGDRIYGIRSFSVRLGQKRVFWICVYLLEMAYS 329

Query: 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVI 399
           V++++GA+SS    K V+++GH+ LA +LW RA+++DL + A+  SFYMFIWK + +
Sbjct: 330 VAMVIGATSSCLWSKFVTVLGHAVLASILWKRARSLDLMSKAAITSFYMFIWKVNCL 386

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|301154093|emb|CBW30171.1| Chlorophyll synthase [Musa balbisiana]

 Score =  287 bits (735), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 138/293 (47%), Positives = 205/293 (69%)

Query: 103 SFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVL 162
           S W   L  L+A Y F+RP  +IGTI+ I S+++L ++S  D++P +    L+A+++A+ 
Sbjct: 89  SMWKSALTSLNAFYRFSRPHTVIGTIMSIISVSLLAVESLTDISPSFLTGLLEAVIAALF 148

Query: 163 MNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLI 222
           MN Y+  +NQV D+EIDKVNKP+LPLASG+ S+ TG+A+ LT +  S  +A  + S PL 
Sbjct: 149 MNIYIVGLNQVYDIEIDKVNKPNLPLASGEYSLRTGVAVILTSAAMSFGVAWVVGSLPLF 208

Query: 223 FGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVI 282
           + L + F+LGTAYSV+LPFLRWK    +A +C++ V  +V Q +FF+H Q +V  R V  
Sbjct: 209 WALFISFILGTAYSVNLPFLRWKRFAVVAAVCILAVRAVVVQLAFFLHMQTFVFRRSVSF 268

Query: 283 TRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG 342
           +RPLIFA A +S  S V++L KDIPD +GD+ +G +S S +LG++ V  +CVY L  AY 
Sbjct: 269 SRPLIFATAFMSFFSVVIALFKDIPDIEGDRIYGIRSFSVRLGQKRVFWICVYLLEMAYS 328

Query: 343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           V++++GA+SS    K V+++GH+ LA +LW RA+++DL + A+  SFYMFIWK
Sbjct: 329 VAMVIGATSSCLWSKFVTVLGHAVLASILWKRARSLDLMSKAAITSFYMFIWK 381

Source: Musa balbisiana

Species: Musa balbisiana

Genus: Musa

Family: Musaceae

Order: Zingiberales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33391138|gb|AAP43911.1| homogentisic acid geranylgeranyl transferase [Hordeum vulgare] gi|326497589|dbj|BAK05884.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  287 bits (734), Expect = 8e-75,   Method: Compositional matrix adjust.
 Identities = 142/313 (45%), Positives = 203/313 (64%), Gaps = 5/313 (1%)

Query: 88  QQGCASNNEDD--INSTSFWDV---LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSF 142
           Q GC+  N D    N+    ++   +LKKL + Y F RP  + GTI+GITS+++LP++S 
Sbjct: 83  QAGCSEVNWDQNGSNANRLEEIRGDVLKKLRSFYEFCRPHTIFGTIIGITSVSLLPMKSI 142

Query: 143 ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAIT 202
            D T      +L+AL +A+ MN YV  +NQ+ D++IDK+NKP LPLASG+ S+ TG+ + 
Sbjct: 143 DDFTVTVLRGYLEALTAALCMNIYVVGLNQLYDIQIDKINKPGLPLASGEFSVATGVFLV 202

Query: 203 LTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV 262
           L   + S +I +   S PL+  LIV FLLG+AYS++ PFLRWK    LA  C++ V  ++
Sbjct: 203 LAFLIMSFSIGIRSGSAPLMCALIVSFLLGSAYSIEAPFLRWKRHALLAASCILFVRAIL 262

Query: 263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISS 322
            Q +FF H Q++VL RP+  T+ L+FA   +   SAV++L KDIPD DGD+ FG QS+S 
Sbjct: 263 VQLAFFAHMQQHVLKRPLAATKSLVFATLFMCCFSAVIALFKDIPDVDGDRDFGIQSLSV 322

Query: 323 KLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN 382
           +LG + V +LC+  L  AYG + +VGASS+    K++++ GH  LA  LW RAQ  ++ N
Sbjct: 323 RLGPQRVYQLCISILLTAYGAATLVGASSTNLFQKIITVSGHGLLALTLWQRAQHFEVEN 382

Query: 383 NASTYSFYMFIWK 395
            A   SFYMFIWK
Sbjct: 383 QARVTSFYMFIWK 395

Source: Hordeum vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	435
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.786	0.870	0.398	1.6e-63
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.779	0.826	0.346	3.7e-55
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.749	0.800	0.343	8e-53
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.682	0.755	0.286	1.2e-23

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 648 (233.2 bits), Expect = 1.6e-63, P = 1.6e-63
 Identities = 140/351 (39%), Positives = 203/351 (57%)

Query:    58 YSTNKIKNNENTSSRNCKPFNK--YRVAVTLQQQGCASNNEDDINSTSFWDVLLKKLHAL 115
             +  N ++ +   SS    P +K  +RV  T  Q     +N       SF D     L A 
Sbjct:    48 FRNNLVRPDGQGSSLLLYPKHKSRFRVNATAGQPEAFDSNS---KQKSFRD----SLDAF 100

Query:   116 YVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVAD 175
             Y F+RP  +IGT++ I S++ L ++  +D++P  F   L+A+++A++MN Y+  +NQ++D
Sbjct:   101 YRFSRPHTVIGTVLSILSVSFLAVEKVSDISPLLFTGILEAVVAALMMNIYIVGLNQLSD 160

Query:   176 VEIDKVNKPDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFGLIVWFLLGTAY 235
             VEIDKVNKP LPLASG+ S+ TG                   S PL + L V F+LGTAY
Sbjct:   161 VEIDKVNKPYLPLASGEYSVNTGIAIVASFSIMSFWLGWIVGSWPLFWALFVSFMLGTAY 220

Query:   236 SVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLXXXXXXXXX 295
             S++LP LRWK    +A MC++ V  ++ Q +F++H Q +V GRP++ TRPL         
Sbjct:   221 SINLPLLRWKRFALVAAMCILAVRAIIVQIAFYLHIQTHVFGRPILFTRPLIFATAFMSF 280

Query:   296 XXXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQL 355
                V++L KDIPD +GDK FG +S S  LG++ V   CV  L  AY V+++VGA+S F  
Sbjct:   281 FSVVIALFKDIPDIEGDKIFGIRSFSVTLGQKRVFWTCVTLLQMAYAVAILVGATSPFIW 340

Query:   356 VKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLFNLMF 406
              K++S++GH  LA  LW RA++VDLS+     S YMFIWK    +   L F
Sbjct:   341 SKVISVVGHVILATTLWARAKSVDLSSKTEITSCYMFIWKLFYAEYLLLPF 391

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 120/346 (34%), Positives = 189/346 (54%)

Query:    58 YSTNKIKNNENTSSRNCKPFNKYRV-AVTLQQQGCASNNEDDINSTSFWDVLLKKLHALY 116
             Y  N+  +  NTS + C+   KY V A++ Q         D     S WD +   L   Y
Sbjct:    65 YKVNEGGSTSNTS-KECE--KKYVVNAISEQSFEYEPQTRDP---ESIWDSVNDALDIFY 118

Query:   117 VFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV 176
              F RP+AM   ++G T  +++ ++  +DL+  +F+ +L+ +++ + ++ +   +NQ+ D+
Sbjct:   119 KFCRPYAMFTIVLGATFKSLVAVEKLSDLSLAFFIGWLQVVVAVICIHIFGVGLNQLCDI 178

Query:   177 EIDKVNKPDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFGLIVWFLLGTAYS 236
             EIDK+NKPDLPLASG LS                       S PL + + +  ++ +AY+
Sbjct:   179 EIDKINKPDLPLASGKLSFRNVVIITASSLILGLGFAWIVDSWPLFWTVFISCMVASAYN 238

Query:   237 VDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLXXXXXXXXXX 296
             VDLP LRWK  P L  +  +    +     FF+H Q  V  RP    RPL          
Sbjct:   239 VDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIY 298

Query:   297 XXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLV 356
               V++L KDIPD +GD++FG QS+S +LG + V  +CV  L   YGV+++VGA+S     
Sbjct:   299 AIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMTYGVTILVGATSPILWS 358

Query:   357 KLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLF 402
             K+++++GH+ LA +LW  A++VDL++N   +SFYMFIWK    + F
Sbjct:   359 KIITVLGHAVLASVLWYHAKSVDLTSNVVLHSFYMFIWKLHTAEYF 404

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 547 (197.6 bits), Expect = 8.0e-53, P = 8.0e-53
 Identities = 114/332 (34%), Positives = 181/332 (54%)

Query:    65 NNENTSSRNCKPFNKYRV-AVTLQQQGCASNNEDDINSTSFWDVLLKKLHALYVFTRPFA 123
             N   ++S+ C+   KY V A++ Q         D  N    W  +   L   Y F RP+A
Sbjct:    68 NEGGSTSKECE--KKYVVNAISEQSFEYEPQARDPKN---IWGSVNDALDTFYKFCRPYA 122

Query:   124 MIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK 183
             +   ++G T  +++ ++  +DL+  +F+ +L+ +++ + ++ +   +NQ+ D+EIDK+NK
Sbjct:   123 IFSVVLGATFKSLVAVERLSDLSLAFFIGWLQVVVAVICIHIFDVGLNQLCDIEIDKINK 182

Query:   184 PDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFGLIVWFLLGTAYSVDLPFLR 243
             PDLPLASG+LS                       S PL + + +  +   AY+VDLP LR
Sbjct:   183 PDLPLASGNLSFRNVVIITASSLILGLGFAWIVGSWPLFWTVFICCMFAAAYNVDLPLLR 242

Query:   244 WKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLXXXXXXXXXXXXVMSLL 303
             WK  P L  +  +    +     FF+H Q  V  RP    RPL            V++L 
Sbjct:   243 WKKYPVLTAISFIANVAVTRSLGFFLHMQTCVFKRPTTFPRPLIFCTAIVSIYAIVIALF 302

Query:   304 KDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIG 363
             KDIPD +GD++FG QS+S +LG + V  +CV  L  AYGV+++VGA+S     K+++++G
Sbjct:   303 KDIPDMEGDEKFGIQSLSLRLGPKRVFWICVSLLEMAYGVTILVGATSPILWSKIITVLG 362

Query:   364 HSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
             H+ LA +LW  A++ DL++N    SFYMFIWK
Sbjct:   363 HAILASVLWYHAKSTDLTSNVVLQSFYMFIWK 394

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 280 (103.6 bits), Expect = 1.2e-23, P = 1.2e-23
 Identities = 88/307 (28%), Positives = 140/307 (45%)

Query:   106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTP-KYFMEFLKALLSAVLMN 164
             D + +  +A + F RP  + GT +G T++    L     L      ++ L  LL+ +  N
Sbjct:    92 DRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLKALSGLLALICGN 151

Query:   165 NYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGXXXXXXXXXXXXXXXXXXQSPPLIFG 224
              Y+  +NQ+ D+ IDKVNKP LP+A+GDLS+ +                     P +   
Sbjct:   152 GYIVGINQIYDIGIDKVNKPYLPIAAGDLSVQSAWLLVIFFAIAGLLVVGFNFGPFITSL 211

Query:   225 LIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR 284
               +   LGT YSV  P LR K  P  A + + TV G +  F  + H  +  LG P   + 
Sbjct:   212 YSLGLFLGTIYSV--PPLRMKRFPVAAFLIIATVRGFLLNFGVY-HATRAALGLPFQWSA 268

Query:   285 PLXXXXXXXXXXXXVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS 344
             P+            V+++ KD+PD +GD++F   ++++KLG  N+  L    L   Y VS
Sbjct:   269 PVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNIAFLGSGLLLVNY-VS 327

Query:   345 VIVGASSSFQLVK-LVSIIGHSTLAFLLWLRAQTVDLSN--NASTYSFYMFIWKASVIDL 401
              I  A    Q+ +  + I  H  LA  L  +   ++ +N    +   +Y FIW     + 
Sbjct:   328 AISLAFYMPQVFRGSLMIPAHVILASGLIFQTWVLEKANYTKEAISGYYRFIWNLFYAEY 387

Query:   402 FNLMFEF 408
               L+F F
Sbjct:   388 --LLFPF 392


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.138   0.417    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      435       399   0.00097  117 3  11 22  0.45    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  245 KB (2132 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:01
  No. of threads or processors used:  24
  Search cpu time:  32.83u 0.07s 32.90t   Elapsed:  00:00:04
  Total cpu time:  32.83u 0.07s 32.90t   Elapsed:  00:00:05
  Start:  Mon May 20 17:27:38 2013   End:  Mon May 20 17:27:43 2013

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.5.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	435
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-110
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	3e-62
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	5e-23
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-18
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	8e-12
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	2e-09
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	3e-09
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	1e-07
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	4e-07
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	6e-07
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	2e-06
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	3e-05
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	5e-05
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	6e-05
PRK08238	479	PRK08238, PRK08238, hypothetical protein; Validate	2e-04
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	3e-04

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score =  325 bits (836), Expect = e-110
 Identities = 134/267 (50%), Positives = 189/267 (70%)

Query: 129 VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPL 188
           +GITS+++L ++S +D +P +F   L+AL+ A+LMN Y+  +NQ+ D+EIDKVNKP LPL
Sbjct: 1   LGITSVSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPL 60

Query: 189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKP 248
           ASG+ S+ TG+AI  + ++ S  +   + S PL + L V F+LGTAYS++LP LRWK   
Sbjct: 61  ASGEFSVATGVAIVTSFAIMSFGMGWIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSA 120

Query: 249 FLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPD 308
             A  C++ V  +V Q +FF+H Q +VLGRP V TRPLIFA A +   S V++L KDIPD
Sbjct: 121 VAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDIPD 180

Query: 309 EDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLA 368
            +GD+ FG +S S +LG++ V  LCV  L  AY  +++VGASSSF   K+++++GH  LA
Sbjct: 181 VEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILA 240

Query: 369 FLLWLRAQTVDLSNNASTYSFYMFIWK 395
            +LW RAQ+VDLS+ A+  SFYMFIWK
Sbjct: 241 SILWQRAQSVDLSSKAAITSFYMFIWK 267

Length = 280

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score =  203 bits (518), Expect = 3e-62
 Identities = 100/299 (33%), Positives = 159/299 (53%), Gaps = 9/299 (3%)

Query: 100 NSTSFWDVLLKKLHALYVFTRPFAMIGT---IVGITSIAILPLQSFADLTPKYFMEFLKA 156
              +    +   L+AL+ F+RP  +IGT   ++G+  IAI    +   L        L A
Sbjct: 1   LPKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALA--NLGLLLGA 58

Query: 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 216
            ++ +  N Y+  +NQ+ D+EID++NKP LPLA+G+ S   G  I +   + +L +A  L
Sbjct: 59  WIACLCGNVYIVGLNQLTDIEIDRINKPHLPLAAGEFSRRQGQRIVIITGILALILAA-L 117

Query: 217 QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVL 276
             P L+  + +  L+GTAYS  LP +R K  P LA +C+ TV G++     F+HFQ ++L
Sbjct: 118 LGPWLLITVGISLLIGTAYS--LPPIRLKRFPLLAALCIFTVRGVIVNLGLFLHFQ-WLL 174

Query: 277 GRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA 336
           G  V+I   +      +   +  +++ KDIPD +GD+Q+   + + +LGK+ V +L  + 
Sbjct: 175 GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWV 234

Query: 337 LFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWK 395
           L   Y   + VG  S   +     I+ H  L  LLW R+Q VDL +  +   FY FIWK
Sbjct: 235 LTACYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWK 293

Length = 308

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score = 97.2 bits (242), Expect = 5e-23
 Identities = 70/249 (28%), Positives = 111/249 (44%), Gaps = 18/249 (7%)

Query: 153 FLKALLSAVLMNNYVGTVNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLTLSLTSL 210
            L  LL+ +L+      +N   D EID    NKPD PL SG +S    L + L L L  L
Sbjct: 25  LLLLLLALLLLQAAGNVLNDYFDYEIDADNPNKPDRPLPSGRISPREALLLGLALLLLGL 84

Query: 211 AIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH 270
            +AL L    L+ GL+    LG  YS   P LR K +P L  + +   FGL+        
Sbjct: 85  LLALLLGPLLLLLGLLGLL-LGLLYS---PPLRLKRRPLLGELVVGLAFGLLILLGA--- 137

Query: 271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL 330
              Y +G    I  PL+  A  +  +S  + L  DI D +GD++ G +++  +LG++  L
Sbjct: 138 ---YAVGG--DIPSPLLLLALPVFLLSLAILLTNDIRDVEGDRKAGIRTLPVRLGRKRAL 192

Query: 331 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY 390
            L    L  A  + +++    +     L+ ++    LA  L + A+ +   N       +
Sbjct: 193 ALYALLLAAALLLLLLLLLLLAP----LLLLLAVLLLALALLVAARLLRRRNPEEPARTF 248

Query: 391 MFIWKASVI 399
           +FI     +
Sbjct: 249 LFIALLFGL 257

Length = 259

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score = 85.0 bits (211), Expect = 2e-18
 Identities = 68/295 (23%), Positives = 117/295 (39%), Gaps = 25/295 (8%)

Query: 107 VLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNY 166
             LK L  L    RP   +  ++      +L       L        L A L+  L  + 
Sbjct: 8   NKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKL-----LLLAFLAFFLARSA 62

Query: 167 VGTVNQVADVEIDKVNKP--DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFG 224
              +N +AD EID++N    + PL SG +S+   L + + L L  LA+AL L     +  
Sbjct: 63  GYVINDLADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLS 122

Query: 225 LIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR 284
           L    +L  AY         K   FL  + +   FGL                  + +  
Sbjct: 123 LA-ALVLALAY------PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGS------LPLLA 169

Query: 285 PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS 344
            L+  AAI+ T+     ++  I D +GD++ G +S+    G +  L L    L  A  + 
Sbjct: 170 WLLLLAAILWTLG--YDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALA-LLLLLASALL 226

Query: 345 VIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVI 399
           V++G      L+ L+ ++G    A LL  +   VD+ +  + ++ +       ++
Sbjct: 227 VLLGL--LAGLLGLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLL 279

Length = 289

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score = 65.2 bits (159), Expect = 8e-12
 Identities = 41/193 (21%), Positives = 76/193 (39%), Gaps = 34/193 (17%)

Query: 154 LKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIA 213
           L  L++  L   +  ++N   D ++D +N+P  P+ SG +S+       L L++  L +A
Sbjct: 41  LGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVA 100

Query: 214 LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTK----PFLAGMCMVT--------VFGL 261
           L L +  ++   +V  +L   YS+  P ++ K      P   G+            +F  
Sbjct: 101 LVLGNWLIVLFTVVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFA- 157

Query: 262 VYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSIS 321
               ++            VV+       A  I T       L D    +GD+Q G +S+ 
Sbjct: 158 --PLTWQS----------VVVALIYSLGAHGIMT-------LNDFKSVEGDRQLGLRSLP 198

Query: 322 SKLGKENVLRLCV 334
             +G +    + V
Sbjct: 199 VMIGVKRAAIVAV 211

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score = 58.4 bits (142), Expect = 2e-09
 Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 23/185 (12%)

Query: 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 216
           LL+  L+     T+N   D E+D +N+P  P+ SG +S+   L +   L++  LA+A  L
Sbjct: 71  LLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL 130

Query: 217 QSPPLIFGL-IVWFLLGTAYSVDLPFLRWKTK----PFLAGMCMVTVFGLVYQFSFFIHF 271
              P +F   ++   L   YS   P LR K       +  G+    +       +F    
Sbjct: 131 G--PWVFLAALLGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWAGAAAF---- 182

Query: 272 QKYVLGRPVVITRPLIFAAAIISTISA--VMSLLKDIPDEDGDKQFGFQSISSKLGKENV 329
                    + + P I   A++ ++ A  +M+ L D    +GD+Q G +S+    G++N 
Sbjct: 183 ------GAGLPSWP-IVILALLYSLGAHGIMT-LNDFKSVEGDRQLGLRSLPVVFGEKNA 234

Query: 330 LRLCV 334
            R+  
Sbjct: 235 ARIAC 239

Length = 314

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 49/196 (25%), Positives = 86/196 (43%), Gaps = 18/196 (9%)

Query: 169 TVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLI-- 226
            +N   D EID++N+PD P+ SG +S    LA ++ L    +A+A  L    L   L   
Sbjct: 56  AINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLAIALFNS 115

Query: 227 VWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPL 286
           +  +L        P L   +  +L G             S F+ F    +G   ++   +
Sbjct: 116 LLLVLYAETLKGTPGLGNASVAYLTG-------------STFL-FGGAAVGTEGLLALLV 161

Query: 287 IFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI 346
           +FA A ++T++    ++KD+ D +GD+  G +++   +G    L +    L  A   S +
Sbjct: 162 LFALAALATLA--REIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPL 219

Query: 347 VGASSSFQLVKLVSII 362
               S+F L  LV + 
Sbjct: 220 PYLLSTFGLWYLVLVA 235

Length = 276

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 46/200 (23%), Positives = 86/200 (43%), Gaps = 20/200 (10%)

Query: 148 KYFMEFLKALL---SAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLT 204
              +   +ALL   +A   +     +N   D E+D++N+PD P+ SG +S    L + + 
Sbjct: 31  LGGLPLDEALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAIL 90

Query: 205 LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ 264
           L +  L  A  +     +  ++V  +LG  Y+  L     K    +  + +  + G+   
Sbjct: 91  LFILGLIAAYLISPLAFLVVILVS-VLGILYNWKL-----KEYGLIGNLYVAFLTGMT-- 142

Query: 265 FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL 324
              FI F    +G        L+ A A + T+     ++KDI D +GD+  G ++++   
Sbjct: 143 ---FI-FGGIAVGELNEAVI-LLAAMAFLMTLGR--EIMKDIEDVEGDRLRGARTLAILY 195

Query: 325 GKENVLRLCVYALFFAYGVS 344
           G++   R+   A  F   V 
Sbjct: 196 GEKIAGRIA--AALFILAVL 213

Length = 279

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 51.1 bits (123), Expect = 4e-07
 Identities = 51/228 (22%), Positives = 98/228 (42%), Gaps = 20/228 (8%)

Query: 170 VNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWF 229
           +N + D+EIDK+NKP+ P+ SG +S+      ++TL +  L +++ +     +  L+   
Sbjct: 56  INDIYDIEIDKINKPERPIPSGRISLKEAKIFSITLFIVGLILSIFINIYAFLIALLNSI 115

Query: 230 LLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFA 289
           LL   Y+ DL     K    +  + +  + GL + F     F        ++I     F 
Sbjct: 116 LL-YLYAKDL-----KKTGLIGNLIVAYLTGLSFIFGGLAVFNVL----RIIILFLCAFF 165

Query: 290 AAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA 349
           +     I      +KDI D +GD +    ++  K G +    +    L  A  +S +   
Sbjct: 166 STWSREI------VKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYF 219

Query: 350 SSSFQLVKLVSIIGHS---TLAFLLWLRAQTVDLSNNASTYS-FYMFI 393
              F +  L+ +I       +A L+ L+  +++ ++ AS Y    M +
Sbjct: 220 LGIFGIYYLIVVIICDILFIIAMLILLKNPSIEGASKASKYLKIIMIL 267

Length = 279

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 50.5 bits (121), Expect = 6e-07
 Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 49/257 (19%)

Query: 111 KLHALYVFTRPF-AMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGT 169
           +L A    TRP   ++  IVGI   +++ L     +     + FL   L     N    T
Sbjct: 2   ELKAFIEITRPHNCILAGIVGILG-SLVALGGIPPIK-TLILIFLVVYLGCSGGN----T 55

Query: 170 VNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWF 229
           +N   D EIDK+N+P+ PL  G +S    L  +L L    LA+A  +     +F L  + 
Sbjct: 56  INDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEAFLFALGAYV 115

Query: 230 LLGTAYSVDLPFL-RWKTKPF-------LAGMCMVT-VFGLVYQFSFFIHFQKYVLGRPV 280
           L+         FL  WK KP        +A +   T ++G +             +GR +
Sbjct: 116 LM---------FLYAWKLKPLPFIGNVVVALLTGATPIYGAI------------AVGR-I 153

Query: 281 VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA 340
            +   L   A +++    +M   KDI D +GDK  G +++   +GK+   R       F 
Sbjct: 154 GLAGYLAICAFLVNVAREIM---KDIEDIEGDKAKGAKTLPIIIGKK---RAAYIGAIFG 207

Query: 341 YGVSVIVGASSSFQLVK 357
             ++VI    +SF  VK
Sbjct: 208 V-LTVI----ASFLPVK 219

Length = 277

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 53/252 (21%), Positives = 99/252 (39%), Gaps = 22/252 (8%)

Query: 122 FAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV 181
            A +G  +   +  +L L     L           LL   L+   V  +N + D+E D +
Sbjct: 18  IAALGQSLVYMASLLLGLPISWLL-----------LLITFLIAAAVYIINYLTDLEEDII 66

Query: 182 NKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPF 241
           NKP+  + S   + G  L + +        +   +  P      I+  +LG  YSV    
Sbjct: 67  NKPERVVFSETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFIIPLILGILYSVFF-K 125

Query: 242 LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMS 301
            R K  P    + +  ++ L        ++Q         I   L+  A  I   S +  
Sbjct: 126 RRLKRIPLFKNLVVSLLWALSPLILGVYYYQLT-------IFSLLLLYAVFIFLKSFIRE 178

Query: 302 LLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSI 361
           ++ DI D +GD++ G +++   LGKE  L+  +        + ++   +    L+ LV +
Sbjct: 179 IVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGLLPLLLLVLL 238

Query: 362 IGHSTLAFLLWL 373
           +    LA++L+ 
Sbjct: 239 LL---LAYVLYY 247

Length = 285

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 45.2 bits (108), Expect = 3e-05
 Identities = 27/69 (39%), Positives = 41/69 (59%), Gaps = 3/69 (4%)

Query: 170 VNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIV 227
           VN + DVE D++   K + P+ASG +S+     + + L + SLA+A  L SP L   L+V
Sbjct: 65  VNDIRDVEADRLHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAY-LLSPKLALVLLV 123

Query: 228 WFLLGTAYS 236
           + +L  AYS
Sbjct: 124 YLVLNLAYS 132

Length = 295

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 61/257 (23%), Positives = 94/257 (36%), Gaps = 60/257 (23%)

Query: 115 LYVFTRP---FAMIGT-IVGITSIAILPLQSFADL-TPKYFMEFLKALLSAVLMNNYVGT 169
           L V +RP     + G  +VG+   A     S ADL +P     F   L  A   N ++  
Sbjct: 11  LLVLSRPRFWLYLAGPVVVGVAYAA----DSVADLFSPAAVALFAYFLFPA---NVFLYG 63

Query: 170 VNQVADVEIDKVN--KPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPL-IFGLI 226
           VN V D + D++N  K               + + + LS  +LA+A  L  PP     L+
Sbjct: 64  VNDVFDADTDELNPKKDREREVR--YRGDRRVLVAVALS-GALALAFLLVLPPAAWPALL 120

Query: 227 VWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPL 286
            + +L   YS   P LR+KT P L                  +    Y+L        P 
Sbjct: 121 AFLVLSVEYSA--PPLRFKTTPVLD----------------SLSNGLYIL--------PG 154

Query: 287 IFAAAIIS----TISAV---------MSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLC 333
           + A A++S     + AV         M     IPD + D+  G ++ ++ LG+      C
Sbjct: 155 VAAYALVSGSLPPLLAVAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYC 214

Query: 334 VYALFFAYGVSVIVGAS 350
                     +    A 
Sbjct: 215 ---AACWLLAAAAFAAV 228

Length = 282

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 44/186 (23%), Positives = 80/186 (43%), Gaps = 14/186 (7%)

Query: 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 216
           LLS   +  Y  T+N   D +ID +N+P  P+ SG +S    +   + L +  +AIA  L
Sbjct: 60  LLSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFIL 119

Query: 217 -----QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHF 271
                   P +F L ++     A+    P L+ K   +L    +   +  +  ++    F
Sbjct: 120 DLWAGHEFPNVFVLALFGSF-IAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGHALF 178

Query: 272 QKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR 331
            +     P +    LI++ A +      ++++ D    +GD+  G QS+    G E    
Sbjct: 179 GEL---NPDIAVLTLIYSIAGLG-----IAIVNDFKSVEGDRALGLQSLPVAFGIETAAW 230

Query: 332 LCVYAL 337
           +CV A+
Sbjct: 231 ICVGAI 236

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|236195 PRK08238, PRK08238, hypothetical protein; Validated

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 9/80 (11%)

Query: 159 SAVLMNNYVGTVNQVADVEIDK--VNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSL 216
           SAV    Y+  +N + D+E D+    K   P ASG L +  GLA    L L  LA+AL+L
Sbjct: 240 SAV----YI--LNDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALAL 293

Query: 217 QSPPLIFGLIVWFLLGTAYS 236
             P  +  L+ +  L  AYS
Sbjct: 294 -GPAFLLVLLAYLALTLAYS 312

Length = 479

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score = 42.5 bits (100), Expect = 3e-04
 Identities = 53/209 (25%), Positives = 81/209 (38%), Gaps = 60/209 (28%)

Query: 157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSM-------------GTGLAITL 203
           L+S   +  Y  T+N   D EID +N+P  P+ SG +S              G GLA TL
Sbjct: 129 LMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLAYTL 188

Query: 204 -------TLSLTSLAIALSLQS-----PPLIF---GLIVWFLLGTAYSVDLPFLRWKTKP 248
                     +  LA+  SL S     PPL     G I  + LG +Y + LP+  W    
Sbjct: 189 DVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASY-ISLPW--W---- 241

Query: 249 FLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPD 308
             AG     +FG                     +T  ++    + S     ++++ D   
Sbjct: 242 --AGQ---ALFG--------------------TLTPDVVVLTLLYSIAGLGIAIVNDFKS 276

Query: 309 EDGDKQFGFQSISSKLGKENVLRLCVYAL 337
            +GD+  G QS+    G E    +CV ++
Sbjct: 277 IEGDRALGLQSLPVAFGVETAKWICVGSI 305

Length = 375

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	435
PLN02878	280	homogentisate phytyltransferase	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PLN00012	375	chlorophyll synthetase; Provisional	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	99.98
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	99.97
PRK13362	306	protoheme IX farnesyltransferase; Provisional	99.97
PRK12871	297	ubiA prenyltransferase; Reviewed	99.97
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	99.97
PLN02922	315	prenyltransferase	99.96
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.96
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	99.96
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	99.96
PRK13105	282	ubiA prenyltransferase; Reviewed	99.95
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	99.95
PRK12872	285	ubiA prenyltransferase; Reviewed	99.95
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.95
PLN02776	341	prenyltransferase	99.95
PRK12875	282	ubiA prenyltransferase; Reviewed	99.93
PRK13591	307	ubiA prenyltransferase; Provisional	99.92
PRK13592	299	ubiA prenyltransferase; Provisional	99.92
PRK08238	479	hypothetical protein; Validated	99.87
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.86
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.54
KOG4581	359	consensus Predicted membrane protein [Function unk	99.45
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	91.38
PRK12872	285	ubiA prenyltransferase; Reviewed	89.31
PRK13591	307	ubiA prenyltransferase; Provisional	88.9
PRK13105	282	ubiA prenyltransferase; Reviewed	87.19
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	86.6
PRK12875	282	ubiA prenyltransferase; Reviewed	86.39
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	86.29
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	85.2
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	84.04
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	83.8
PRK13592	299	ubiA prenyltransferase; Provisional	83.38
PLN02922	315	prenyltransferase	83.33
PLN00012	375	chlorophyll synthetase; Provisional	82.75
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	81.16

>PLN02878 homogentisate phytyltransferase

Probab=100.00  E-value=2.2e-53  Score=412.14  Aligned_cols=275  Identities=48%  Similarity=0.836  Sum_probs=251.3

Q ss_pred             HHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHH
Q 013845          134 IAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIA  213 (435)
Q Consensus       134 G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l~  213 (435)
                      .+++|.+..+++++.++.+++.+++++++++.+..++|||+|+|+||+|||+||+|||++|+++|+.+.+.+.++|+.++
T Consensus         6 ~~l~a~~~~~~~~~~~~~~~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la   85 (280)
T PLN02878          6 VSLLAVESLSDFSPLFFTGLLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMG   85 (280)
T ss_pred             HhHHHhhccccccHHHHHHHHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence            35566666666766677788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHH
Q 013845          214 LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAII  293 (435)
Q Consensus       214 ~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~  293 (435)
                      +.+|++++.+++..+++++++||.++||+|+||.++++..++..+++...++|+|.+++++++|++..+++++++..+++
T Consensus        86 ~~~g~~~l~~al~~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~  165 (280)
T PLN02878         86 WIVGSWPLFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFM  165 (280)
T ss_pred             HHHChHHHHHHHHHHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHH
Confidence            99998888887777878999999888999999999999988888888888899999999988887666666777777788


Q ss_pred             HHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Q 013845          294 STISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWL  373 (435)
Q Consensus       294 ~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~  373 (435)
                      .++..+++++||++|+|||++.|+||+|+++|++++.+++..++.++|+..++.++..+..+...++..+|.+++..+|+
T Consensus       166 ~~f~~~i~i~KDi~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~~i~~g~~~~~~~~~~~~~~~h~~l~~~L~~  245 (280)
T PLN02878        166 CFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAAAILVGASSSFLWSKIITVLGHGILASILWQ  245 (280)
T ss_pred             HHHHHHHHHHhhCcCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999999999998888888877777888999999999999999


Q ss_pred             HHhhccCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 013845          374 RAQTVDLSNNASTYSFYMFIWKASVIDLFNLMFEF  408 (435)
Q Consensus       374 ~~~~~d~~~~~~~~~f~~~iw~l~~~~yl~lpf~~  408 (435)
                      |.+++|.+++++.++|||||||+||+||+++||.+
T Consensus       246 rs~~vD~~sk~~i~~fY~fiwklfy~ey~l~p~~~  280 (280)
T PLN02878        246 RAQSVDLSSKAAITSFYMFIWKLFYAEYFLIPLVR  280 (280)
T ss_pred             HhHhcCcccHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999863

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=2.8e-51  Score=408.71  Aligned_cols=304  Identities=31%  Similarity=0.531  Sum_probs=253.9

Q ss_pred             chhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhccccccc
Q 013845          101 STSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEID  179 (435)
Q Consensus       101 ~~~~~~~~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~-~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D  179 (435)
                      |++.+++..+.+++|+|++|||+.+++.++++.++++|.....+ .....+...+.++++..+++.+.+++|||+|+|+|
T Consensus         2 ~~~~~~~~~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~~~~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD   81 (308)
T PRK12887          2 PKNPLQPMTSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTIALANLGLLLGAWIACLCGNVYIVGLNQLTDIEID   81 (308)
T ss_pred             CcchhhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH
Confidence            56778888999999999999999999999998888776432221 11112223344445555555555559999999999


Q ss_pred             ccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHH
Q 013845          180 KVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF  259 (435)
Q Consensus       180 ~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~  259 (435)
                      ++|||+||++||++|+++++.+.+++.++|+.+++..|++.+.++ +++.+++++||  .||+|+||+|+.++++++..+
T Consensus        82 ~inkp~rPiasG~ls~~~a~~~~~~~~~lal~la~~~~~~~~~~~-~~~~~lg~~Ys--~pP~rlKr~~~~~~~~i~~~~  158 (308)
T PRK12887         82 RINKPHLPLAAGEFSRRQGQRIVIITGILALILAALLGPWLLITV-GISLLIGTAYS--LPPIRLKRFPLLAALCIFTVR  158 (308)
T ss_pred             hcCCCCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHc--CCchhhcccchhHHHHHHHHH
Confidence            999999999999999999999999999999999999998766655 46888999999  599999999999999888888


Q ss_pred             HHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHH
Q 013845          260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  339 (435)
Q Consensus       260 g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~  339 (435)
                      |..+.+|.+.+.+... +.....+...++..+++.+|+.+++++||++|+|||++.|+||+|+++|++++.+++..++.+
T Consensus       159 g~i~~~g~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~  237 (308)
T PRK12887        159 GVIVNLGLFLHFQWLL-GGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTA  237 (308)
T ss_pred             HHHHHHHHHHHHHHHH-hccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHH
Confidence            8888888776543322 323334556667777888899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHHHHHHHHHHHHHHHHHHh
Q 013845          340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLFNLMFEF  408 (435)
Q Consensus       340 ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~yl~lpf~~  408 (435)
                      +|+..++.+......+....+.++|++++..+++|.+++|.+|++++++|||||||+||+||+++||..
T Consensus       238 ~y~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~~ey~~~~~~~  306 (308)
T PRK12887        238 CYLGMIAVGLLSLPTVNPAFLIVSHLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFFLEYLLFPIAC  306 (308)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999888777766666666666799999999999999999999999999999999999999999999864

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=4.8e-36  Score=295.67  Aligned_cols=263  Identities=16%  Similarity=0.143  Sum_probs=206.5

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcc
Q 013845          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL  188 (435)
Q Consensus       111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~RPl  188 (435)
                      ++++|+|++||++...+...+++|.++|.+..+  ++.   .+++.+++.+++++++|++||+.|+|+|++|+  ++||+
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~--~~~---~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPL   76 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYI--HPI---KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWAL   76 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCCC
Confidence            478999999999999999999999999854322  222   24456678899999999999999999999995  59999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHH
Q 013845          189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  268 (435)
Q Consensus       189 ~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~  268 (435)
                      |+|++|+++|+.+.+++.++++.++..+|+.++.++. ..+.+...|+.      +||++.++|+.+|...|.++..|+.
T Consensus        77 psG~is~~~A~~~~~~~~~~~~~~~~~ln~l~~~l~~-~~~~l~~~yp~------~KR~t~~~~~~lG~~~g~~~l~g~~  149 (286)
T PRK12895         77 VSGRIKMREAIAFTIIFIAIFEICTFLLNRLVFILSP-IVIFLFIIDPF------LKRYTAWRHIYMGSIIGLGVLAGYL  149 (286)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhCccccHHHHHHHHHhHHHHHHH
Confidence            9999999999999999999999999889998877664 35556667774      8999999999899888876667764


Q ss_pred             HHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 013845          269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  348 (435)
Q Consensus       269 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g  348 (435)
                      +.      ++...+....+++.+...+|+.++|++|++||+|+|++.|+||+|+++|++++.++...+..++..+..+.+
T Consensus       150 Av------~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g  223 (286)
T PRK12895        150 AV------IPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISG  223 (286)
T ss_pred             HH------cCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHH
Confidence            42      222222223344566677899999999999999999999999999999999888776556555555555555


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhh-HHHH-HHHHH
Q 013845          349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFY-MFIWK  395 (435)
Q Consensus       349 ~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~-~~f~-~~iw~  395 (435)
                      ....    +.++.++..+.+..+.+|++.+|.+|+++| .+|| ++.|-
T Consensus       224 ~~~~----~~~y~~~~~~~~~~l~~q~~~~~~~~~~~~~~~~F~~N~~i  268 (286)
T PRK12895        224 IYIR----TLWYLAALIIIYTLVIYQHLIIDPRNPINKRMSFFNANSFI  268 (286)
T ss_pred             HHHh----hHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHcCHH
Confidence            4332    345667777778889999999999999988 5544 44443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.8e-36  Score=296.74  Aligned_cols=274  Identities=16%  Similarity=0.173  Sum_probs=208.0

Q ss_pred             ccCchhhhHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 013845           98 DINSTSFWDVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE  177 (435)
Q Consensus        98 ~~~~~~~~~~~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e  177 (435)
                      ++||+ .++..+.++++|+|++||++.++...+.++|.++|..+.+  ++.   .+++.+++.+++++++|++||++|+|
T Consensus         2 ~~~~~-~~~~~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~--~~~---~l~l~~lg~~l~~~a~~~~Nd~~D~d   75 (300)
T PRK13106          2 SWDPG-GLNNTRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIP--PIS---TLILIFLALFFLRTAGMTNDNLADLE   75 (300)
T ss_pred             CCCcc-cchhhHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhhHHhc
Confidence            35663 3344778999999999999999999989999999865432  332   24567889999999999999999999


Q ss_pred             ccccCC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHH
Q 013845          178 IDKVNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCM  255 (435)
Q Consensus       178 ~D~~nk--p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i  255 (435)
                      +|++|+  ++||+|+|++|+++|+.+.++..+.++.++..+|+.+..++. ..+++...||.      +||++.++|+.+
T Consensus        76 iD~~~~RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~ln~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~l  148 (300)
T PRK13106         76 IDAKNPRTKNRPLVTGAIKISEAKALITAGLILFFASAYLVNRWALLLSP-IVALIAMSYPY------MKRYTAFANYHL  148 (300)
T ss_pred             cccCCCccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HhcCCcchHHHH
Confidence            999995  699999999999999999877777777777888987777664 35556788985      799999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCc-----cchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHH
Q 013845          256 VTVFGLVYQFSFFIHFQKYVLGRPV-----VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVL  330 (435)
Q Consensus       256 ~~~~g~~~~~G~~~~~~~~~~g~~~-----~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~  330 (435)
                      +...+..+..|+.++     .|...     ..+...++..+...+|+.++|++|++||+|+|++.|+||+|+++| +++.
T Consensus       149 g~~~~~~~~~G~~a~-----~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~  222 (300)
T PRK13106        149 ASIQGLAVFSGAVAV-----LGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWAL  222 (300)
T ss_pred             HHHHHHHHHHHHHHH-----cCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHH
Confidence            988887766776442     12110     011222334455678899999999999999999999999999999 8888


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhh-HHHHHHHHH
Q 013845          331 RLCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNAST-YSFYMFIWK  395 (435)
Q Consensus       331 ~l~~~l~~~ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~-~~f~~~iw~  395 (435)
                      ++...+...+..+..+.+......   ..+.++..+...++.++...++.+  ++| +.|..+.|-
T Consensus       223 ~~~~~~~~~~v~l~~~~~~~~~lg---~~y~~~~~~~~~~l~~~~~~~~~~--~~~~~~F~~n~~i  283 (300)
T PRK13106        223 TFAGLNQLFSVVLDLLGDLYYGLG---PIAIAATILHGLIMAYAYYLASKK--GDFGRAFYYNIYS  283 (300)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCc--hHHHHHHHHccHH
Confidence            877777666666665555554443   345556666677888888888776  444 455455554

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=3.3e-35  Score=290.21  Aligned_cols=257  Identities=17%  Similarity=0.201  Sum_probs=200.3

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--CCCCcc
Q 013845          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPDLPL  188 (435)
Q Consensus       111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~n--kp~RPl  188 (435)
                      ++++|+|++||++..+..+.+..|.++|.++.+  ++.   .+++++++.+++++++|++||++|+|+|++|  +|+||+
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~--~~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl   75 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLP--GLK---TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPL   75 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCC
Confidence            368999999999999998888889998855432  332   2567888999999999999999999999998  579999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHH
Q 013845          189 ASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  268 (435)
Q Consensus       189 ~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~  268 (435)
                      ++|++|+++|+.+.+++.++++.++..+|..+..++. .+.++.++|+.      +||++.+++++.+...+.++..|+.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~~  148 (282)
T TIGR01475        76 VSGLISKKEARTMIILSLALFLSASYFLNPLAFILSP-LVLLVLIIYPY------TKRFTFLCHYVLGSTYGLAPLAGWV  148 (282)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------HhccccccHHHHHHHHHHHHHHHHH
Confidence            9999999999999998888888888888887776654 45666889985      7999999999887777766666654


Q ss_pred             HHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 013845          269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  348 (435)
Q Consensus       269 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g  348 (435)
                      +.     .|. .......++..+...+|+.+++++||++|+|+|+++|+||+|+++|+|++.++...+..+++++..+.+
T Consensus       149 a~-----~g~-~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (282)
T TIGR01475       149 AV-----IGT-ISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVG  222 (282)
T ss_pred             HH-----hCC-ccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHH
Confidence            42     122 221123344456667888899999999999999999999999999999998887777767776666555


Q ss_pred             HhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHH
Q 013845          349 ASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYS  388 (435)
Q Consensus       349 ~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~  388 (435)
                      ......   ..+.++..+.+..++++.+..|.+|++++++
T Consensus       223 ~~~~~g---~~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~  259 (282)
T TIGR01475       223 FYVGNG---YIALLALILIGLILAYEHYIVDPGDQSKIQR  259 (282)
T ss_pred             HHhhCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence            544433   3444555555667778888888888877765

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.4e-34  Score=283.97  Aligned_cols=265  Identities=20%  Similarity=0.202  Sum_probs=199.6

Q ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhccc---CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC
Q 013845          106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQS---FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN  182 (435)
Q Consensus       106 ~~~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~---~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~n  182 (435)
                      ++.++++++|+|++||++.+.+...++.|.++|...   ...+++.   .+++++++.+++++++|++|||+|+|+|++|
T Consensus         2 ~~~~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~   78 (291)
T PRK12874          2 KKFTKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK---LLILGILAAVSARNFAMAFNRLVDRDIDKDN   78 (291)
T ss_pred             chHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH---HHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence            356788999999999999999999999998887521   1123332   2567788999999999999999999999999


Q ss_pred             C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHH
Q 013845          183 K--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG  260 (435)
Q Consensus       183 k--p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g  260 (435)
                      +  |+||+++|++|+++|+.+++++.++++.+++.+|+.+..+++ ..+++..+||.      +||++.+++++.+...+
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~n~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~~g~~~~  151 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFINPLAFKLSF-PFLIVLGGYSY------FKRFSSLAHLVLGLSLG  151 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhh------hcccccccHHHHHHHHH
Confidence            7  599999999999999999999988888888888988777664 46667899995      89999999998887777


Q ss_pred             HHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHH
Q 013845          261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA  340 (435)
Q Consensus       261 ~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a  340 (435)
                      .++.+|+.++     .|. .  +.+.+++.+...+|+.+++++|+++|+|+|+++|+||+|+++|++++.++......+.
T Consensus       152 ~~~l~G~~av-----~g~-~--~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~  223 (291)
T PRK12874        152 LAPIAGVVAV-----LGE-I--PLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLA  223 (291)
T ss_pred             HHHHHHHHHH-----cCC-C--cHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHH
Confidence            7777776542     132 2  2233444566678999999999999999999999999999999999887655554444


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHH
Q 013845          341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM  391 (435)
Q Consensus       341 y~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~  391 (435)
                      .+.....+......   ..+.++..+.+..+.++.+.++.+|++.++.||.
T Consensus       224 ~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ff~  271 (291)
T PRK12874        224 VLFWLLFVWCAHLG---LFAYLGVIVSALILLYEHYLVRKDFKKIDKAFFT  271 (291)
T ss_pred             HHHHHHHHHHhcch---HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHH
Confidence            33333333322222   2333444455566677777776666666766643

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=7e-35  Score=288.84  Aligned_cols=264  Identities=16%  Similarity=0.149  Sum_probs=198.9

Q ss_pred             HHHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-
Q 013845          108 LLKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-  183 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~~~---l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk-  183 (435)
                      +++++++|+|++||+++.++.   +++++|.++|....+  ++.   .+++++++.+++++++|++||++|+|+|++|+ 
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~--~~~---~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~R   79 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLP--PLP---LVGIIILGALATSAAGCVVNDLWDRDIDPQVER   79 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCc
Confidence            457889999999999987776   477888888854332  222   24567889999999999999999999998754 


Q ss_pred             C-CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHH
Q 013845          184 P-DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (435)
Q Consensus       184 p-~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~  262 (435)
                      + +||+|+|++|+++|+.+++++.++++.+++.+|+.++.+++ .++++.++||.      .||++.+++++.+...+..
T Consensus        80 t~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~  152 (290)
T PRK12870         80 TRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLNPLSFWLCV-AAVPVIFLYPL------AKRVFPVPQLVLAIAWGFA  152 (290)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHhhh------hhhccccceeeehHHHHhH
Confidence            3 89999999999999999999999999999889988777765 46667899985      7999999998877777766


Q ss_pred             HHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHH
Q 013845          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (435)
Q Consensus       263 ~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~  342 (435)
                      +..|+.+.     .|. .  +...+++.+...+|+.+++++++++|+|+|+++|+||+|+++|++++.++... ..+...
T Consensus       153 ~l~g~~a~-----~g~-~--~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~-~~~~~~  223 (290)
T PRK12870        153 VLISWSAV-----TGH-L--DLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLF-FALTVG  223 (290)
T ss_pred             HHHHHHHH-----cCC-C--CHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHH-HHHHHH
Confidence            55665432     132 2  23344556677789999999999999999999999999999999988776553 333333


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhc--cCCChhhhHHHHH-HHHH
Q 013845          343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV--DLSNNASTYSFYM-FIWK  395 (435)
Q Consensus       343 ~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~--d~~~~~~~~~f~~-~iw~  395 (435)
                      .....+......+   .+.++..+....+.++..++  |.+|++.|.++|+ +.|-
T Consensus       224 ~l~~~~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~n~~~  276 (290)
T PRK12870        224 FLAILGVLLELHL---PFWIGLAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWI  276 (290)
T ss_pred             HHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHhhHH
Confidence            3334444443332   33445556667788888877  7677777766654 4443

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7.5e-34  Score=281.58  Aligned_cols=265  Identities=19%  Similarity=0.159  Sum_probs=197.5

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CC
Q 013845          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD  185 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~  185 (435)
                      +.+++++|+|++||++......+.+.|.++|..+.++  +.   .+++++++.+++++++|++|||+|+|+|++|+  ++
T Consensus         4 ~~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~--~~---~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          4 LLTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPG--AS---QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCC--HH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            4567899999999999999988899999998543332  21   24567889999999999999999999999998  58


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHH
Q 013845          186 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF  265 (435)
Q Consensus       186 RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~  265 (435)
                      ||+++|++|+++|+.+.+.+.+.++.++...|+++..+++ +++++.+.||.      +||++.++++..+...+.++..
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~~g~~~~~~~l~  151 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSP-PALFFLLLYSY------CKRFTALAHVVLGFCLALAPLG  151 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh------hhccccccHHHHHHHHHHHHHH
Confidence            9999999999999998776666666666778988777765 35666899995      7999999998777665655555


Q ss_pred             HHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHH
Q 013845          266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV  345 (435)
Q Consensus       266 G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~l  345 (435)
                      |+++.     .|. .  +...+++.+.+.+|+.+.+++++++|+|+|+++|+||+|+++|++++.++........+.+.+
T Consensus       152 g~~a~-----~g~-~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~  223 (291)
T PRK12886        152 AWIAI-----RGT-I--ELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLF  223 (291)
T ss_pred             HHHHH-----cCC-C--cHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHH
Confidence            55432     132 2  233445556667888899999999999999999999999999999998876666555555555


Q ss_pred             HHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCCh-hhhHHH-HHHHHH
Q 013845          346 IVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNN-ASTYSF-YMFIWK  395 (435)
Q Consensus       346 l~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~-~~~~~f-~~~iw~  395 (435)
                      +.+.....+   .++.++..+.+..+.++.+..+.+|+ +.++++ ..+.|-
T Consensus       224 ~~~~~~~~~---~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~~~~~  272 (291)
T PRK12886        224 ALGISAGLG---PWFLAGLAVTGILLLYEHWLLRGGDLTRLDAAFFNMNGYI  272 (291)
T ss_pred             HHHHHhcCc---HHHHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHhHHH
Confidence            555443333   34445555566666677777777773 456564 344443

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=5.4e-34  Score=281.15  Aligned_cols=254  Identities=19%  Similarity=0.240  Sum_probs=191.1

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccc
Q 013845          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS  190 (435)
Q Consensus       111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~s  190 (435)
                      ++++|++++||+++..+.++.++|.++|.+..  .++.   .+++++++.+++++++|++|||+|+|+|++|+|+||+++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~s   76 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFK--IDLK---GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIPS   76 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCC--cchH---HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcCC
Confidence            36889999999999999999999999885422  2322   256778899999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 013845          191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  270 (435)
Q Consensus       191 G~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~~  270 (435)
                      |++|+++|+.+++++.++++.+++.+|+++..+++ .+.++.++||.     ++||++.++|+++++..|..+..|....
T Consensus        77 G~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Ys~-----~lKr~~~~~~~~vg~~~G~~~~~g~~~~  150 (279)
T PRK09573         77 GRISLKEAKIFSITLFIVGLILSIFINIYAFLIAL-LNSILLYLYAK-----DLKKTGLIGNLIVAYLTGLSFIFGGLAV  150 (279)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999998888988777765 46667899995     4899999999999988887766665432


Q ss_pred             HHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 013845          271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  350 (435)
Q Consensus       271 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g~~  350 (435)
                            +.  ..  ..+++.....+|+.+++++||++|+|+|+++|+||+|+++|+|++.++......+......+....
T Consensus       151 ------~~--~~--~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~  220 (279)
T PRK09573        151 ------FN--VL--RIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFL  220 (279)
T ss_pred             ------cc--ch--HHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                  21  11  223334445567788999999999999999999999999999999887665554444333322211


Q ss_pred             hhhhhHHHHHHHHHHHHHHHHHHHHh-hccCCChhhhHH
Q 013845          351 SSFQLVKLVSIIGHSTLAFLLWLRAQ-TVDLSNNASTYS  388 (435)
Q Consensus       351 ~~~~~~~l~~~~g~~vl~~~l~~~~~-~~d~~~~~~~~~  388 (435)
                         ...++.+.++..++...+.++.. ..+.+|++.+++
T Consensus       221 ---~~~~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  256 (279)
T PRK09573        221 ---GIFGIYYLIVVIICDILFIIAMLILLKNPSIEGASK  256 (279)
T ss_pred             ---HHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHH
Confidence               11234455555555556666533 334445555433

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=8.9e-34  Score=280.50  Aligned_cols=262  Identities=21%  Similarity=0.133  Sum_probs=197.4

Q ss_pred             HHHHHHHHhhhccchHHHHHHHH---HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--
Q 013845          109 LKKLHALYVFTRPFAMIGTIVGI---TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--  183 (435)
Q Consensus       109 ~~~l~ay~~l~Rp~~~~~~~l~~---~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--  183 (435)
                      ++++++|+|++|++++.++.+..   ..|..++.......++.   .+++.+++.+++++++|++||++|+|+|++|+  
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~---~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~~RT   79 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK---MLALFGCGALLLRGAGCTINDLLDRDIDKKVERT   79 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH---HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCCC
Confidence            46899999999999988876544   45555553211111222   24567889999999999999999999999875  


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHH
Q 013845          184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (435)
Q Consensus       184 p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~  263 (435)
                      |+||+|+|++|+++|+.+.+++.++++.+++.+|..++.+++ +++++.++||.      +||++.++++..+...+.++
T Consensus        80 ~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~lg~~~~~~~  152 (289)
T PLN02809         80 KLRPIASGALTPFQGVGFLGAQLLLGLGILLQLNNYSRILGA-SSLLLVFTYPL------MKRFTFWPQAFLGLTFNWGA  152 (289)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHhH------HHhcCcchHHHHHHHHHHHH
Confidence            599999999999999999999999999998888887777765 46777899995      89999999997776666666


Q ss_pred             HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 013845          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (435)
Q Consensus       264 ~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~  343 (435)
                      ..|+.++     .|.. .. ...+.+.....+|+.+.+++++++|+|+|+++|+||+|+++|++...+++ .+....+..
T Consensus       153 l~g~~av-----~g~~-~~-~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~-~~~~~~~~~  224 (289)
T PLN02809        153 LLGWAAV-----KGSL-DP-AVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLT-GFGAASIGG  224 (289)
T ss_pred             HHHHHHH-----hCCC-Ch-HHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHH-HHHHHHHHH
Confidence            5665332     2322 11 22222455667789999999999999999999999999999999666555 344555555


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHH
Q 013845          344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM  391 (435)
Q Consensus       344 ~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~  391 (435)
                      ....+......   ..+.+++.+.+..+++|.+.+|.+|+++|.++|+
T Consensus       225 l~~~g~~~~~~---~~~~~~~~~~~~~l~~~~~~v~~~~~~~~~~~F~  269 (289)
T PLN02809        225 LALSGYNAGLG---WPYYAGLAAAAGHLAWQIQTVDLSSRADCNRKFV  269 (289)
T ss_pred             HHHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            55555544433   2344567777788999999999999998766543

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.2e-34  Score=281.16  Aligned_cols=263  Identities=15%  Similarity=0.115  Sum_probs=200.2

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhccc-CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCc
Q 013845          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQS-FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLP  187 (435)
Q Consensus       111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~-~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~RP  187 (435)
                      ++++|+|++||++.+.+...++.|.+.+... ...+++.   .+++.+++.+++++++|++||++|+|+|++|+  |+||
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~~RP   77 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA---DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTAGRE   77 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCCCCC
Confidence            3689999999999988777666666665311 1123332   24577889999999999999999999999998  5999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHH
Q 013845          188 LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF  267 (435)
Q Consensus       188 l~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~  267 (435)
                      +|+|++|+++|+.+.+.+.++++.++..+|+.+..++. ++++..++|+.      .||++.++++..+...+.++..|+
T Consensus        78 L~sG~is~~~a~~~~~~~~~~~l~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~t~~~~~~lg~~~~~~~l~g~  150 (284)
T PRK12888         78 LVTGAVSVRTAWTGALVALAVFLGAAALLNPLCLALAP-LAVAPLVVYPY------AKRFTNFPHAILGLAQAVGPVGAW  150 (284)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcccchhhHHHHHHHHHHHHHHH
Confidence            99999999999999998888888888888887776664 45566789985      799999999988777666655665


Q ss_pred             HHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 013845          268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV  347 (435)
Q Consensus       268 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~  347 (435)
                      ++.     .|. .  +...+++.+...+|+.+++++|++||+|+|+++|+||+|+++|+|++.++...+..+.+++..+.
T Consensus       151 ~a~-----~g~-~--~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~  222 (284)
T PRK12888        151 IAV-----TGT-W--SWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWF  222 (284)
T ss_pred             HHH-----cCC-C--CHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHH
Confidence            432     132 2  33344556677788999999999999999999999999999999999876666655655555555


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhH-HHH-HHHH
Q 013845          348 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTY-SFY-MFIW  394 (435)
Q Consensus       348 g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~-~f~-~~iw  394 (435)
                      +......+   .+.++..+.+..+.+|.+.+|.+|+++|. .|| .+.|
T Consensus       223 ~~~~~~~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ff~~n~~  268 (284)
T PRK12888        223 GLAVGFGA---LWWIGLAITAGAFAYEHAIVSPTDLSRVNRAFFTANGF  268 (284)
T ss_pred             HHHhCCcH---HHHHHHHHHHHHHHHHHHHcCccCHHHHHHHHHHHhhH
Confidence            55444433   34456667778889999999999988865 554 4444

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7.5e-34  Score=279.92  Aligned_cols=256  Identities=19%  Similarity=0.285  Sum_probs=194.4

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccc
Q 013845          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA  189 (435)
Q Consensus       110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~  189 (435)
                      +++++|++++||+++..+.++.++|.++|....+   +.   .+++++++.+++++++|++||++|+|+|++|+|+||++
T Consensus         2 ~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~---~~---~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl~   75 (279)
T PRK12884          2 TKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLP---LD---EALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPIP   75 (279)
T ss_pred             hHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCc---hH---HHHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCCC
Confidence            5789999999999999999999999999854322   21   24567789999999999999999999999999999999


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHH
Q 013845          190 SGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFI  269 (435)
Q Consensus       190 sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~  269 (435)
                      +|++|+++++.+++++.+++++++..+|+....+++ ++++++++||.     ++||++++++++++...|.++..|...
T Consensus        76 ~G~is~~~a~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~Ys~-----~lK~~~~~~~~~~~~~~~~~~~~g~~~  149 (279)
T PRK12884         76 SGRISRREALLLAILLFILGLIAAYLISPLAFLVVI-LVSVLGILYNW-----KLKEYGLIGNLYVAFLTGMTFIFGGIA  149 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----hhccccchhHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999998888987776654 57778999995     489999889998887777665555433


Q ss_pred             HHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHH
Q 013845          270 HFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGA  349 (435)
Q Consensus       270 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g~  349 (435)
                      .      +...   ...++......+|+.+.++.+|++|+|+|+++|+||+|+++|+|++.++...+....++...+...
T Consensus       150 ~------~~~~---~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~  220 (279)
T PRK12884        150 V------GELN---EAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYL  220 (279)
T ss_pred             h------CCCc---hHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1      2211   134444555667788889999999999999999999999999999998877766666654444333


Q ss_pred             hhhhhhHHHHHHHHHHHHHHHHHHHH-hhccCCChhhhHHH
Q 013845          350 SSSFQLVKLVSIIGHSTLAFLLWLRA-QTVDLSNNASTYSF  389 (435)
Q Consensus       350 ~~~~~~~~l~~~~g~~vl~~~l~~~~-~~~d~~~~~~~~~f  389 (435)
                      ....++   .+.+...+....+.++. +..+.+|++.++++
T Consensus       221 ~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  258 (279)
T PRK12884        221 FGIFNI---LYLAPVLVADLIFLYSAYSLLRSQDRETIRKV  258 (279)
T ss_pred             HHHhhH---HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence            322232   33444444445555554 44455555555554

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=6.1e-34  Score=281.30  Aligned_cols=221  Identities=20%  Similarity=0.246  Sum_probs=174.0

Q ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccccc
Q 013845          113 HALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASG  191 (435)
Q Consensus       113 ~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~-~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG  191 (435)
                      ++|++++||++++.+..++++|.++|...... +++.  ..++.++++..++++++|++|||+|+|+|++|+|+||+++|
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~--~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G   78 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWW--LMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSG   78 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHH--HHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCC
Confidence            46899999999999999999999888422122 3332  12344677999999999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHhchHH-HHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 013845          192 DLSMGTGLAITLTLSLTSLAIALSLQSPP-LIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  270 (435)
Q Consensus       192 ~Is~~~A~~~~i~l~~lgl~l~~~lg~~~-l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~~  270 (435)
                      ++|+++++.+.+++..+++++++.++.+. ..++ +++++.+++||.  ||+|+||+++++++.+++.++..+..+.+. 
T Consensus        79 ~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~~l~-~~~~~~~~~Ys~--~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~-  154 (283)
T TIGR01476        79 IISLREVRWNWLVLTVAGLLVALVLGNWLIVLFT-VVGIVLAVIYSM--PPIKLKRNGWLGPPAVGLSYEGLPWMAGHA-  154 (283)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhheecC--chhhhccCCCccHHHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999888877666 4443 457778999995  899999999889998876555433322221 


Q ss_pred             HHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 013845          271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI  346 (435)
Q Consensus       271 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll  346 (435)
                          +.+ .  .+...++......+++.+++++||++|+|+|+++|+||+|+++|+|++.+++..++.++|+..+.
T Consensus       155 ----~~~-~--~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~  223 (283)
T TIGR01476       155 ----IFA-P--LTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIG  223 (283)
T ss_pred             ----HhC-C--CCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHH
Confidence                122 2  23334444556667788899999999999999999999999999999999888877777765543

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5.7e-34  Score=280.52  Aligned_cols=257  Identities=21%  Similarity=0.251  Sum_probs=188.1

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccc
Q 013845          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS  190 (435)
Q Consensus       111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~s  190 (435)
                      ++++|++++||++...+.++.+.|.++|.+..++  ..   ..++++++.+++++++|++||++|+|+|++|+|+||+++
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~--~~---~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~   77 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS--PS---LTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPS   77 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch--HH---HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCC
Confidence            4789999999999999999999999998543221  11   145778899999999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 013845          191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  270 (435)
Q Consensus       191 G~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~~  270 (435)
                      |++|+++++.+++++.++|+++++.+|+....+++ .++++.++||.     |+||++.++|++++...|..+.+|... 
T Consensus        78 G~is~~~a~~~~~~l~~~g~~~~~~l~~~~~~~~~-~~~~~~~~Yt~-----~lK~~~~~g~~~vg~~~g~~~~~g~~~-  150 (276)
T PRK12882         78 GAVSPRGALAFSILLFAAGVALAFLLPPLCLAIAL-FNSLLLVLYAE-----TLKGTPGLGNASVAYLTGSTFLFGGAA-  150 (276)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH-----HHhcccchhHHHHHHHHHHHHHHHHHH-
Confidence            99999999999999999999999889987776664 46667889985     689999989998887777655555432 


Q ss_pred             HHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 013845          271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  350 (435)
Q Consensus       271 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g~~  350 (435)
                           .+...  ....+...+..++++.+++++||++|+|+|+++|+||+|+++|+|++.++.............+....
T Consensus       151 -----~~~~~--~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~  223 (276)
T PRK12882        151 -----VGTEG--LLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLL  223 (276)
T ss_pred             -----hcccc--hHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                 12211  11223334445566788999999999999999999999999999999887665554433332221111


Q ss_pred             hhhhhHHHHHHHHHHHHHH-HHHHHHhhccCCChhhhHHH
Q 013845          351 SSFQLVKLVSIIGHSTLAF-LLWLRAQTVDLSNNASTYSF  389 (435)
Q Consensus       351 ~~~~~~~l~~~~g~~vl~~-~l~~~~~~~d~~~~~~~~~f  389 (435)
                      ...   +..+.+...+... .+....+..|.+|++.++++
T Consensus       224 ~~~---~~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  260 (276)
T PRK12882        224 STF---GLWYLVLVAPADLVMLAAAYRSLKKTDPTASQKL  260 (276)
T ss_pred             HHh---hHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            222   2333443333332 33334556677777666554

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=2e-33  Score=281.40  Aligned_cols=225  Identities=21%  Similarity=0.244  Sum_probs=176.9

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChH-HHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 013845          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPK-YFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL  186 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~-~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~R  186 (435)
                      -++++++|++++||+++..++.+.+.|.+.+..  .++... .+..++.++++..++++++|++|||+|+|+|++|+|+|
T Consensus        23 ~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~~D~~~D~~~~~~R  100 (314)
T PRK07566         23 TTSIWKARLQLMKPITWFPPMWAFLCGAVSSGA--FGWTLENVLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYR  100 (314)
T ss_pred             cchHHHHHHHHhCCcchHHHHHHHHHHHHHcCC--CCcchhHHHHHHHHHHHHHHHHHHHHHHHhhhhccCccccCCCCC
Confidence            357789999999999999998888888776532  122221 11113446677888999999999999999999999999


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHH-H
Q 013845          187 PLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ-F  265 (435)
Q Consensus       187 Pl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~-~  265 (435)
                      |+++|++|+++++.+++++.++++.+++.+|++...+++ .+++++++||.  ||+++||+++++|+.+++.+|..+. .
T Consensus       101 pl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~l-~~~~~~~~Yt~--gP~~lK~~~~~g~i~vg~~~g~~~~~~  177 (314)
T PRK07566        101 PIPSGAISLRWVLYLIAVLTVLGLAVAYLLGPWVFLAAL-LGLFLAWIYSA--PPLRLKQNGWLGNYAVGLSYEGLPWWA  177 (314)
T ss_pred             CCCCceeCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHH-HHHHHHHHhcC--CccccccccchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999998888987776664 57778999995  8999999998899988877765433 3


Q ss_pred             HHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHH
Q 013845          266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS  344 (435)
Q Consensus       266 G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~  344 (435)
                      |.+.      .+. ...+...++..++..+++.+++++||++|+|+|+++|+||+|+++|++++.+++..++.++|++.
T Consensus       178 g~~~------~~~-~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~l~~~~~~~~  249 (314)
T PRK07566        178 GAAA------FGA-GLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACVVIDLFQLAV  249 (314)
T ss_pred             HHHH------hcc-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHHHHHHHHHHH
Confidence            3322      121 11233344555566677888999999999999999999999999999999988877777776654

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-33  Score=278.55  Aligned_cols=259  Identities=18%  Similarity=0.183  Sum_probs=194.0

Q ss_pred             HHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--
Q 013845          109 LKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--  183 (435)
Q Consensus       109 ~~~l~ay~~l~Rp~~~~~~~---l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--  183 (435)
                      ++++++|+|++|++++....   ++.+.|.++|....++  +.   .+++++++.+++++++|++||++|+|+|++|+  
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~--~~---~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~Rt   76 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPD--LW---VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKRT   76 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCC--HH---HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCCC
Confidence            35789999999988776554   4567788887543322  22   14567788899999999999999999999765  


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHH
Q 013845          184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (435)
Q Consensus       184 p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~  263 (435)
                      ++||+|+|++|+++|..+++++.++++.+++.+|+.+..+++ .+.++.++|+.      .||++.++++..+...|.++
T Consensus        77 ~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~g~~~  149 (282)
T PRK12848         77 KNRPLASGAVSEKEALALFVVLVLVAFLLVLTLNTLTIWLSV-AALALAWIYPF------MKRYTHLPQVVLGAAFGWGI  149 (282)
T ss_pred             CCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HHhcCcccHHHHHHHHHHHH
Confidence            489999999999999999999999999988888987777664 46667899985      79999889987777777666


Q ss_pred             HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 013845          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (435)
Q Consensus       264 ~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~  343 (435)
                      .+|+.+.      ++..  +...+++.+...+|+.+.++.++++|+|+|+++|+||+|+++|+|++.+.... +.+....
T Consensus       150 ~~g~~a~------~~~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~  220 (282)
T PRK12848        150 PMAFAAV------QGSV--PLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLL-QLATLAL  220 (282)
T ss_pred             HHHHHHH------hCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHH-HHHHHHH
Confidence            6665442      2222  23344555667788999999999999999999999999999999988776533 3333333


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHH
Q 013845          344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM  391 (435)
Q Consensus       344 ~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~  391 (435)
                      ..+.+.....   +..+.++..+....+.++...+|.+|+++|.++|+
T Consensus       221 ~~~~~~~~~~---~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~  265 (282)
T PRK12848        221 LAWAGWLLGL---GWAYYWGLLVAAALFVYQQKLIRDREREACFKAFL  265 (282)
T ss_pred             HHHHHHHhcC---cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            3333333322   23445566677778888888889888887765553

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=9.3e-33  Score=281.35  Aligned_cols=217  Identities=21%  Similarity=0.294  Sum_probs=165.2

Q ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCC
Q 013845          109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKY---FMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPD  185 (435)
Q Consensus       109 ~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~---l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~  185 (435)
                      .+++++|++++||++++...+++++|.+.. +.   +++..   ...++.++++..++++++|++|||+|+|+|++|+|+
T Consensus        82 ~~~~k~~l~L~RP~t~~~~~~~v~~G~~~~-g~---~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~  157 (375)
T PLN00012         82 TDIWKIRLQLTKPVTWPPLVWGVLCGAAAS-GN---FHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPY  157 (375)
T ss_pred             hHHHHHHHHHhCHHHHHHHHHHHHHHHHHc-CC---CCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCC
Confidence            467899999999999999999999998853 22   22221   112356778889999999999999999999999999


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHHh-------chHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHH
Q 013845          186 LPLASGDLSMGTGLAITLTLSLTSLAIALSL-------QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTV  258 (435)
Q Consensus       186 RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~l-------g~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~  258 (435)
                      ||+++|++++++++.+..++..+++.+++.+       |++.+.+++ ++++++++||.  ||+++||++++||+.+++.
T Consensus       158 Rpi~sG~Is~~~al~~~~~l~~~~l~l~~~L~~~~~~~~~~~~~l~l-~gi~l~~~YS~--pPl~lKr~~~~G~v~lG~~  234 (375)
T PLN00012        158 RPIPSGAISENEVITQIWVLLLGGLGLAYTLDVWAGHDFPIVFYLAL-GGSLLSYIYSA--PPLKLKQNGWIGNYALGAS  234 (375)
T ss_pred             CCcCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHH-HHHHHhhhhcC--CchhhhHhccHhHHHHHHH
Confidence            9999999999999997766666666555443       344444443 47778999995  8999999999999887766


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHH
Q 013845          259 FGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALF  338 (435)
Q Consensus       259 ~g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~  338 (435)
                      ++..+..+.++     +.|.   ++...++..++.+++++++++.||++|+|+|+++|+||+||++|++++.+++...+.
T Consensus       235 ~~~lp~~~g~a-----~~g~---~s~~~illal~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~  306 (375)
T PLN00012        235 YISLPWWAGQA-----LFGT---LTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSID  306 (375)
T ss_pred             HHHHHHHHHHH-----HcCC---CCHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHH
Confidence            65443322221     2232   233344455666778999999999999999999999999999999999988765444


Q ss_pred             HH
Q 013845          339 FA  340 (435)
Q Consensus       339 ~a  340 (435)
                      +.
T Consensus       307 l~  308 (375)
T PLN00012        307 IT  308 (375)
T ss_pred             HH
Confidence            44

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=2.2e-33  Score=277.63  Aligned_cols=260  Identities=18%  Similarity=0.199  Sum_probs=193.6

Q ss_pred             HHHHHHHHHhhhccchHHH---HHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-
Q 013845          108 LLKKLHALYVFTRPFAMIG---TIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-  183 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~---~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk-  183 (435)
                      .++++++|++++||+++.+   ..+++++|.++|.... ..++.   .+++++++.+++++++|++|||+|+|+|++|+ 
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~-~~~~~---~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~~R   78 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSL-LPDIS---LLVLFIIGSVLMRSAGCIINDIFDRKIDKHVAR   78 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCcc-CCcHH---HHHHHHHHHHHHHHHHHHHHhHHHhhhccCCCc
Confidence            4567999999999998775   4567788888885432 13332   25678889999999999999999999999765 


Q ss_pred             -CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHH
Q 013845          184 -PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (435)
Q Consensus       184 -p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~  262 (435)
                       ++||+++|++|+++|+.+++++.++++.+++.+|+..+.+++ ++++++++||.      .||++.+++++.+...+..
T Consensus        79 t~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~  151 (285)
T PRK12847         79 TKNRPLASGALSVKQALILLFILLLIALVILLLLNKTTIYLSF-IAVILIVLYPL------MKRFFYWPQLFLGFTFNMG  151 (285)
T ss_pred             ccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHhccc------cccCCcccHHHHHHHHHHH
Confidence             489999999999999999999999999988888987777765 46777999995      7999988998777666655


Q ss_pred             HHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHH
Q 013845          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (435)
Q Consensus       263 ~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~  342 (435)
                      +..|+.+.      ++..  +...++..+...+|+.+.+++++++|+|+|+++|+||+|+++|++++.++........+.
T Consensus       152 ~l~~~~a~------~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~  223 (285)
T PRK12847        152 ILMAFAAV------QNQL--DIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLIL  223 (285)
T ss_pred             HHHHHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHH
Confidence            54554432      2222  233455566777889999999999999999999999999999999998877666555544


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHH
Q 013845          343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY  390 (435)
Q Consensus       343 ~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~  390 (435)
                      ..+. +.......  +.+ ++.++....+.++...+|.+|+++++++|
T Consensus       224 ~~~~-~~~~~~~~--~~y-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f  267 (285)
T PRK12847        224 WLIL-GIISSLHN--IFY-LAILAAAGIFYYQYKLLDFDNPANCMYAF  267 (285)
T ss_pred             HHHH-HHHhcCcH--HHH-HHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            4332 33222211  122 23333345677777788888777665543

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.7e-33  Score=276.59  Aligned_cols=267  Identities=15%  Similarity=0.115  Sum_probs=198.5

Q ss_pred             HHHHHHHhhhccchHHHHHH---HHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--C
Q 013845          110 KKLHALYVFTRPFAMIGTIV---GITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--P  184 (435)
Q Consensus       110 ~~l~ay~~l~Rp~~~~~~~l---~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p  184 (435)
                      +++++|+|++||+++.++.+   +.+.|.+++....+  ++.   .+++++++..++++++|++||+.|+|+|++|+  +
T Consensus         5 ~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~--~~~---~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~RT~   79 (294)
T PRK12873          5 IKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPP--SLL---LLLLIILGGLAVSGAGCIANDLWDRRIDRKVERTK   79 (294)
T ss_pred             HhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCC--CHH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcCC
Confidence            46889999999998877755   44677666643222  222   25678899999999999999999999999876  4


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHHHHh----chHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHH
Q 013845          185 DLPLASGDLSMGTGLAITLTLSLTSLAIALSL----QSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG  260 (435)
Q Consensus       185 ~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~l----g~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g  260 (435)
                      +||+++|++|+++|+.+.+++.++++.+++.+    |+.+..+++ +++++..+||.      +||++.+++++.+...+
T Consensus        80 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~~n~l~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~vlg~~~a  152 (294)
T PRK12873         80 NRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQPSRNLCLSLAF-LALPPILIYPS------AKRWFAYPQAILALCWG  152 (294)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH-HHHHHHHHHHH------HHhccccchHHHHHHHH
Confidence            99999999999999999999999998887665    556666654 46667899995      79999999987776666


Q ss_pred             HHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHH
Q 013845          261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA  340 (435)
Q Consensus       261 ~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a  340 (435)
                      .++.+|+.++     .|. ..+....+++.+.+.+|+.+.+++++++|+|+|+++|+||+|+++|++.. .....+..+.
T Consensus       153 ~~~l~gw~Av-----~g~-~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~-~~~~~~~~~~  225 (294)
T PRK12873        153 FAVLIPWAAA-----EGS-LNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNAL-KTVQICYFLT  225 (294)
T ss_pred             hHHHHHHHHH-----hCC-CchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhH-HHHHHHHHHH
Confidence            6666776432     232 22222334445667789999999999999999999999999999997544 4455555555


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCC--hhhh-HHHHHHHHHHHH
Q 013845          341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSN--NAST-YSFYMFIWKASV  398 (435)
Q Consensus       341 y~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~--~~~~-~~f~~~iw~l~~  398 (435)
                      .++....+......+   ++.++..+.+..+.+|+..+|.+|  +++| +.|..+.|-.+.
T Consensus       226 ~~ll~~~g~~~~l~~---~y~~~~~~~~~~l~~~~~~~~~~~~~~~~c~~~F~~n~~~G~~  283 (294)
T PRK12873        226 SIFLALAAFIAQVGF---IFWPFWLIASIGMQRDILKLFPEKQSIKTIGNHFSNQVILGSL  283 (294)
T ss_pred             HHHHHHHHHHhCCcH---HHHHHHHHHHHHHHHHHHHhCcCcccHHHHHHHHHhccHHHHH
Confidence            555556666555443   445566666778889988898877  4676 555566776543

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-32  Score=274.91  Aligned_cols=266  Identities=16%  Similarity=0.146  Sum_probs=197.5

Q ss_pred             hhHHHHHHHHHHHhhh---ccchHHHHHHHHHHHHHHhcccC---CCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc
Q 013845          104 FWDVLLKKLHALYVFT---RPFAMIGTIVGITSIAILPLQSF---ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE  177 (435)
Q Consensus       104 ~~~~~~~~l~ay~~l~---Rp~~~~~~~l~~~~G~~lA~~~~---~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e  177 (435)
                      +.+.+++++++|+|++   ||+......+++++|.++|....   ...++.   .+++++++++++++++|++|||+|+|
T Consensus        22 ~~~~~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~~~~---~~~l~~l~~~l~~~a~~~~Nd~~Dr~   98 (314)
T PRK12878         22 VDRRLPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLLLLW---HLFLFFVGAIAMRGAGCTYNDIVDRD   98 (314)
T ss_pred             hhhhcchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3344778999999999   88888888899999999985421   123332   25678899999999999999999999


Q ss_pred             ccccCC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHH
Q 013845          178 IDKVNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCM  255 (435)
Q Consensus       178 ~D~~nk--p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i  255 (435)
                      +|++|+  ++||+++|++|+++++.+.+++.++|+.+.+..|++...+++ .++++.++||.      .||++.++++..
T Consensus        99 iD~~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~~~~~~~l~~-~~~~~~~~Y~~------~KR~t~~~~~~~  171 (314)
T PRK12878         99 IDAKVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQFNWFAIALGI-ASLAIVAAYPF------MKRITWWPQFFL  171 (314)
T ss_pred             cccCCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------HHhcCCcchHHH
Confidence            998766  489999999999999999999999999988888887777765 56777999985      799998888766


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHH
Q 013845          256 VTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVY  335 (435)
Q Consensus       256 ~~~~g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~  335 (435)
                      +...+.++..|+++.     .|. .  +...+++.+...+|+...+.+++++|+|+|+++|+||+|+++|++++.++...
T Consensus       172 Gl~~~~~~l~g~~a~-----~g~-~--~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~  243 (314)
T PRK12878        172 GLAFSWGALMGWAAH-----FGS-L--SLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLF  243 (314)
T ss_pred             HHHHHHHHHHHHHHH-----hCC-C--chHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHH
Confidence            665555555665432     232 2  22334445566778889999999999999999999999999999999887644


Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHH
Q 013845          336 ALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM  391 (435)
Q Consensus       336 l~~~ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~  391 (435)
                      ..... ....+.+.....++.   +.++...+...+.++..++|.+|++.|+++|+
T Consensus       244 ~~~~~-~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~  295 (314)
T PRK12878        244 YGLAV-LLMGLAFWLAGVPLL---ALLGLLAAAAHLAWQIARLDIDDPDQCLRLFK  295 (314)
T ss_pred             HHHHH-HHHHHHHHHhcCcHH---HHHHHHHHHHHHHHHHHHcccCChHHHHHHHH
Confidence            43333 333333333333333   33344444556778888888877777766654

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=1.4e-32  Score=272.38  Aligned_cols=272  Identities=23%  Similarity=0.306  Sum_probs=206.1

Q ss_pred             HHHHHHHHHhhhccchHHHHH---HHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 013845          108 LLKKLHALYVFTRPFAMIGTI---VGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP  184 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~~~---l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp  184 (435)
                      .+++++.+.+++|+++++.+.   .+..+|..++....++     +...++++++++++++++|++||++|+|+||+|+|
T Consensus         6 ~~~~~~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~r   80 (289)
T COG0382           6 LPNKLKALLKLLRLDRPIFNLLLLLPALLGLLLAASGLPS-----LKLLLLAFLAFFLARSAGYVINDLADREIDRINPR   80 (289)
T ss_pred             hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCch-----HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCC
Confidence            455666666666666655554   4456666666422221     22367788999999999999999999999999998


Q ss_pred             --CCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHH
Q 013845          185 --DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (435)
Q Consensus       185 --~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~  262 (435)
                        +||+|||++|+++|+.+.+++.++++.+++.+|++++.+.+ ++.++.+.|+.      +||.+.+++++++..++..
T Consensus        81 t~~RPl~sG~vS~~~a~~~~~~~~~~~~~~a~~l~~~~~~l~~-~~~~l~~~Y~~------~Kr~~~~~~~~lg~~~~~~  153 (289)
T COG0382          81 TKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLAFLLSL-AALVLALAYPF------LKRFTFLPQLVLGLAFGLG  153 (289)
T ss_pred             ccCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHH------hhcCCchHHHHHHHHHHHH
Confidence              99999999999999999999999999999999988776654 68889999964      8999999999999888887


Q ss_pred             HHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHH
Q 013845          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (435)
Q Consensus       263 ~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~  342 (435)
                      +..|+.+.      ++.  .+...+++.++..+|+++++++||++|+|+|++.|+||+|+.+|++++.+++.... ...+
T Consensus       154 ~~~g~~a~------~~~--~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~-~~~~  224 (289)
T COG0382         154 ALAGAAAV------GGS--LPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLL-LASA  224 (289)
T ss_pred             HHHHHHHH------hCc--cchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHH-HHHH
Confidence            77776543      221  23345666777888999999999999999999999999999999999988777665 3333


Q ss_pred             HHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHHHHHHHHHHHHH
Q 013845          343 VSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVIDLF  402 (435)
Q Consensus       343 ~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~yl  402 (435)
                      .....+......  ...+..++.+.+..++++...++.++++.+.+++.....+-...++
T Consensus       225 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (289)
T COG0382         225 LLVLLGLLAGLL--GLIYLLGLLVAALLLLYQILIVDVRDPPACFALFDVNLLLGLLLFI  282 (289)
T ss_pred             HHHHHHHHHhhc--hHHHHHHHHHHHHHHHHHHHHhcccChHHHHHHHHHhhHHHHHHHH
Confidence            333333333222  1345666677777888888888887877787877665554444433

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.5e-32  Score=269.82  Aligned_cols=264  Identities=16%  Similarity=0.149  Sum_probs=192.6

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhc------cc---CCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 013845          110 KKLHALYVFTRPFAMIGTIVGITSIAILPL------QS---FADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDK  180 (435)
Q Consensus       110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~------~~---~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~  180 (435)
                      ++++.|.++.|.++.+.++.-+..|.++|.      ++   .+  ++   ..+++..++.+.+++++|++||+.|+|+|+
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~--~~---~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~   76 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLG--GI---KTISLGGSAFFCARTVGIIVNQIIDCAIDK   76 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCC--CH---HHHHHHHHHHHHHHHHHHHHHhHHHhcccC
Confidence            468999999999888877776788888884      22   21  22   235678899999999999999999999999


Q ss_pred             cCC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHH
Q 013845          181 VNK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTV  258 (435)
Q Consensus       181 ~nk--p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~  258 (435)
                      +|+  ++||+|+|++|+++|+.+.+++.+++++++..+|+.+..++. +++++.++||.      +||++++++++.|..
T Consensus        77 ~~~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~ln~l~~~l~~-~~~~~~~iY~~------~KR~t~~~~~vLGl~  149 (300)
T PRK12876         77 KNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLNPLCFSLAV-LSTLLMIIYPY------TKRVTFLCHWILGLV  149 (300)
T ss_pred             CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHh------HhcCCchhHHHHHHH
Confidence            998  499999999999999999988888888888889998887775 46666789995      899999999877776


Q ss_pred             HHHHHHHHHHHHHHHHhhCCCccchH--HHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHH
Q 013845          259 FGLVYQFSFFIHFQKYVLGRPVVITR--PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA  336 (435)
Q Consensus       259 ~g~~~~~G~~~~~~~~~~g~~~~~~~--~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l  336 (435)
                      .+..+..|+.++     .+.+..+..  ..++......+|..++|++|++||+|+|++.|+||+|+++|++++.++...+
T Consensus       150 ~~~~~l~~~~Av-----~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~  224 (300)
T PRK12876        150 YYLAILMNFFAI-----IETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASAN  224 (300)
T ss_pred             HHHHHHHHHHHH-----hcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHH
Confidence            666555665432     233211100  1122233445667799999999999999999999999999999887766666


Q ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--HHHHHHHHhhccCCChhhhHHHHHH
Q 013845          337 LFFAYGVSVIVGASSSFQLVKLVSIIGHSTL--AFLLWLRAQTVDLSNNASTYSFYMF  392 (435)
Q Consensus       337 ~~~ay~~~ll~g~~~~~~~~~l~~~~g~~vl--~~~l~~~~~~~d~~~~~~~~~f~~~  392 (435)
                      ..+..++.++.+......+.  .+..+..+.  ...+.++.+.+|.++++.|.+||+.
T Consensus       225 ~~l~~~~l~~~g~~~~l~~~--~y~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~F~~  280 (300)
T PRK12876        225 LIASAIAYLLIGYFVSNKKI--FYLCSLVPLTVILKTIKHYSLIDKKKSTLEQKFFLG  280 (300)
T ss_pred             HHHHHHHHHHHHHHhhccHH--HHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHh
Confidence            66555555555655544432  233333222  2223455466677777777776653

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.6e-32  Score=268.43  Aligned_cols=265  Identities=15%  Similarity=0.229  Sum_probs=195.9

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC-----C
Q 013845          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK-----P  184 (435)
Q Consensus       110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk-----p  184 (435)
                      ++++.|++.+||+++..+..++++|.++|.....++++..   .++++++++++++++|.+|||+|.|.|+.|+     |
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~~---~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt~~~   78 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPLL---GALMLLGYFLLHASLNVFNDYKDYVLDCDHHETTGYR   78 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCccccccCCC
Confidence            4688999999999999999999999999965434566642   5678899999999999999999955444443     7


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHH
Q 013845          185 DLPLASGDLSMGTGLAITLTLSLTSLAIA----LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG  260 (435)
Q Consensus       185 ~RPl~sG~Is~~~A~~~~i~l~~lgl~l~----~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g  260 (435)
                      +||+++|++|+++++...+++..+++.++    ...|++.+.++ +++++.++.||.  ||+++|++++ |++.++..+|
T Consensus        79 ~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~~~~~l~l~-~~~~~~~~~Yt~--~P~~lky~gl-Ge~~v~~~~g  154 (296)
T PRK05951         79 QHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAVTLA-LLGVFLWTCYMG--PPFFLKYRWL-GEHLVFYAWS  154 (296)
T ss_pred             CCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHcC--CCcccCCCCc-hHHHHHHHHH
Confidence            89999999999999999888766665443    23465555555 468889999994  8999998876 9998988888


Q ss_pred             HHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHH
Q 013845          261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA  340 (435)
Q Consensus       261 ~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a  340 (435)
                      +..++|.+.. +    ++..  +...+.......+++..+.+.||+||+|+|++.|+||+|+++|+|++ ++...+...+
T Consensus       155 ~~~vlg~~~~-~----~~~~--~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~  226 (296)
T PRK05951        155 HMLVMGLIYV-W----LGNL--SSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSP  226 (296)
T ss_pred             HHHHHHHHHH-H----hCcc--cHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHH
Confidence            7777776543 2    2222  23344555666777788899999999999999999999999999999 6666666777


Q ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHH
Q 013845          341 YGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSF  389 (435)
Q Consensus       341 y~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f  389 (435)
                      |+..+........+++.++++++.......+.++.++.|.++.+.+.+.
T Consensus       227 ~~~~~~~~~~g~~~~~~l~~ll~lp~~~~~~~~~~~~~~~~~~~~~~~~  275 (296)
T PRK05951        227 YVILQILLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDPDEATVQL  275 (296)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhhCcccccHHHHHH
Confidence            7766555544444555555555554444444555555555554444444

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=2.7e-32  Score=274.30  Aligned_cols=254  Identities=18%  Similarity=0.287  Sum_probs=177.8

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccC-CCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCC
Q 013845          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSF-ADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDL  186 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~-~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~R  186 (435)
                      ..+++++|++++||++++ ..++.++|.++|.... +++....+ .+...++.+.+..+++|++|||+|+|+|++|+|.|
T Consensus         8 ~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l-~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          8 FVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLL-LLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             hhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHH-HHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            567899999999999888 5666777777875321 22221110 12223444456667899999999999999999999


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHHHHHhch-------HHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHH
Q 013845          187 PLASGDLSMGTGLAITLTLSLTSLAIALSLQS-------PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF  259 (435)
Q Consensus       187 Pl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~-------~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~  259 (435)
                      |+++|++|+++++.+.+++.++++.++..++.       +.+++..+++++++++||.  ||+++||.++.++..++..+
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~--~P~~lKr~~~~g~~~vGl~~  163 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSA--PPLKLKKNILTSAPAVGFSY  163 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcC--CchhhhccchhHHHHHHHHH
Confidence            99999999999999999999988887766542       2222322457788999995  89999999888888777666


Q ss_pred             HHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHH
Q 013845          260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  339 (435)
Q Consensus       260 g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~  339 (435)
                      +.....+..+     ..+.   .+...++..+...+|+.+++++||++|+|+|++.|+||+|+++|++++.++......+
T Consensus       164 ~~~~~~~~~a-----~~g~---~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~  235 (331)
T PRK12392        164 GFITFLSANA-----LFSD---IRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDL  235 (331)
T ss_pred             HHHHHHHHHH-----HhcC---CCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHH
Confidence            6544333322     2232   2334445566677889999999999999999999999999999999998876655545


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHh
Q 013845          340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQ  376 (435)
Q Consensus       340 ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~  376 (435)
                      ..+..+..+.....++.   +....++++..+.+|.+
T Consensus       236 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~q~~  269 (331)
T PRK12392        236 VFAVFAWLAWSWGFTVL---MYFILVGLVLNIVIQIQ  269 (331)
T ss_pred             HHHHHHHHHHHhcccHH---HHHHHHHHHHHHHHHHH
Confidence            55544444554444332   22233334444555544

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=5.2e-32  Score=267.33  Aligned_cols=257  Identities=17%  Similarity=0.186  Sum_probs=186.5

Q ss_pred             HHHHhhhccchHHHH---HHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCc
Q 013845          113 HALYVFTRPFAMIGT---IVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLP  187 (435)
Q Consensus       113 ~ay~~l~Rp~~~~~~---~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~RP  187 (435)
                      ++|.|++|++++...   .++..+|..+|.......++.   .+++.+++..++++++|++|||+|+|+|++|+  |+||
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~~~---~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   78 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIPPLY---LLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP   78 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCCcHH---HHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence            568888888776555   455678888874311111222   14567788899999999999999999999765  4899


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHH
Q 013845          188 LASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF  267 (435)
Q Consensus       188 l~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~  267 (435)
                      +|+|++|+++|+.+++++.++|+.+++.+|+.+..+++ +++++.+.||.      .||++.++++..+...+..+..|+
T Consensus        79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l~~~~~~l~~-~~~~~~~~Y~~------~Kr~~~~~~~~~g~~~~~~~~~g~  151 (281)
T TIGR01474        79 LASGAVSVRQAILFLLVQLLVALGVLLQLNPLTILLGV-ASLALVATYPF------MKRITYWPQLVLGLAFGWGALMGW  151 (281)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH-HHHHHHHHhch------hcccccccHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999998888988777765 57777999995      899999999877766666666675


Q ss_pred             HHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 013845          268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV  347 (435)
Q Consensus       268 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~  347 (435)
                      ++.     .| ..  +...+++.....+|+.+.+++++++|+|+|+++|+||+|+++|++++.+.... ..+......+.
T Consensus       152 ~a~-----~g-~~--~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~-~~~~~~~~~~~  222 (281)
T TIGR01474       152 AAV-----TG-DL--STAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGL-YALMILLLALA  222 (281)
T ss_pred             HHH-----cC-CC--cHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHH-HHHHHHHHHHH
Confidence            432     23 22  22334345566788999999999999999999999999999999887554333 33332333333


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHH
Q 013845          348 GASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM  391 (435)
Q Consensus       348 g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~  391 (435)
                      +......   .++.++..+.+..+.++..++|.+|+++++++|+
T Consensus       223 ~~~~~~~---~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~  263 (281)
T TIGR01474       223 GLIAGLG---PVYYLGLAAAALLLIRQIATLDIRDPENCLKLFK  263 (281)
T ss_pred             HHHhCCc---HHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            3333322   3444555566777788877888777777665543

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=9.3e-32  Score=268.52  Aligned_cols=224  Identities=21%  Similarity=0.307  Sum_probs=174.0

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHH---HHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC
Q 013845          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKY---FMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP  184 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~---l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp  184 (435)
                      ..+++++|++++||++++.+.++++.|...+.    .+++..   ...++.+++++.++++++|.+|||+|+|.|+.|+|
T Consensus        12 ~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~----~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~D~~~~~   87 (306)
T TIGR02056        12 ETNIWKIRLQLMKPITWIPLIWGVVCGAAASG----NFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDIDAINEP   87 (306)
T ss_pred             chhHHHHHHHHcChHhhHHHHHHHHHHHHHcC----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhhccCCC
Confidence            45678999999999999999999999988642    222221   11234456788999999999999999999999999


Q ss_pred             CCcccccccCHHHHHHHHHHHHHHHHHHHHHhc-------hHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHH
Q 013845          185 DLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ-------SPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVT  257 (435)
Q Consensus       185 ~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg-------~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~  257 (435)
                      +||+++|++++++++.+++.+.++++.+++.+.       ++.+.++ +++++.+++||.  ||+++||++++|++.+++
T Consensus        88 ~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~-~~~~~~~~~Yt~--gP~~lk~~g~~G~i~vg~  164 (306)
T TIGR02056        88 YRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLA-LFGSFIAFIYSA--PPLKLKQNGWLGNFALGA  164 (306)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHH-HHHHHHHHHHcC--ChhhhhhcccHHHHHHHH
Confidence            999999999999999999888888877765542       3444444 357788999995  899999999889988876


Q ss_pred             HHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHH
Q 013845          258 VFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYAL  337 (435)
Q Consensus       258 ~~g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~  337 (435)
                      .++..+..+.+.     ..|.   ++...++..+..++|+.++++.||++|+|+|++.|+||+|+++|+|++.+++..+.
T Consensus       165 ~~~~~~~~~~~a-----~~g~---~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~  236 (306)
T TIGR02056       165 SYIALPWWAGHA-----LFGE---LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAI  236 (306)
T ss_pred             HHHHHHHHHHHH-----HhCC---CcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHH
Confidence            666544443322     1232   23334455566677899999999999999999999999999999999999888776


Q ss_pred             HHHHHHHHH
Q 013845          338 FFAYGVSVI  346 (435)
Q Consensus       338 ~~ay~~~ll  346 (435)
                      ..++...+.
T Consensus       237 ~~~~~~~~~  245 (306)
T TIGR02056       237 DIFQGLIAA  245 (306)
T ss_pred             HHHHHHHHH
Confidence            666655433

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=3.1e-31  Score=263.61  Aligned_cols=267  Identities=15%  Similarity=0.106  Sum_probs=185.7

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CC
Q 013845          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD  185 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~  185 (435)
                      .+.++++|++++||++......++++|.++|.+..  .++.   .+++++++..++++++|++|||+|+|+|++|+  |+
T Consensus         6 ~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~--~~~~---~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~   80 (296)
T PRK04375          6 SRATLKDYLALTKPRVISLNLFTALGGMLLAPPGV--PPLL---LLLLTLLGIALVAGAAGALNNYIDRDIDAKMERTKN   80 (296)
T ss_pred             hhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCC--CCHH---HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCccCC
Confidence            45679999999999999999999999999985432  3332   24567889999999999999999999999987  69


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHH-HH
Q 013845          186 LPLASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL-VY  263 (435)
Q Consensus       186 RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~-lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~-~~  263 (435)
                      ||+++|++|+++|+.+++++.++|+.+++. .|..+..++++..+.+.++||.     ++||++. +|..+++..|. ++
T Consensus        81 Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~~~~~~~l~~~~~~~~~~~Ys~-----~lKr~~~-~~~~v~~~~g~~~~  154 (296)
T PRK04375         81 RPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLAAWLTLAGIFFYVVVYTL-----WLKRRTP-QNIVIGGAAGAMPP  154 (296)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcc-----chhcCCc-cchHHHHHHHHhHH
Confidence            999999999999999999999999888754 5766665544323335678985     4899996 57767766553 44


Q ss_pred             HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 013845          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (435)
Q Consensus       264 ~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~  343 (435)
                      ..|+++.     .| ..  +...+++.+...+|+...+..++++|+|||+++|+||+|+++|++++.+.......+....
T Consensus       155 l~g~~a~-----~g-~~--~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~  226 (296)
T PRK04375        155 LIGWAAV-----TG-SL--SWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAV  226 (296)
T ss_pred             HHHHHHh-----CC-CC--CHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHH
Confidence            4565432     12 22  3334455666778888889999999999999999999999999998877654443332222


Q ss_pred             HHHHHHhhhhhhHHHHHHH-HHHHHHHHHHHHHhhccCCChhhh-HHHHHHHHHH
Q 013845          344 SVIVGASSSFQLVKLVSII-GHSTLAFLLWLRAQTVDLSNNAST-YSFYMFIWKA  396 (435)
Q Consensus       344 ~ll~g~~~~~~~~~l~~~~-g~~vl~~~l~~~~~~~d~~~~~~~-~~f~~~iw~l  396 (435)
                      .++.......++   .+.+ +..+.+..+.++.+..+.+|++.+ +.|+...|.+
T Consensus       227 ~~~~~~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~  278 (296)
T PRK04375        227 SLLPVLLGMAGL---LYLVVALLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL  278 (296)
T ss_pred             HHHHHHHhccCH---HHHHHHHHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence            222222111222   3333 222233344455555666665554 3444444443

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=5e-31  Score=260.07  Aligned_cols=263  Identities=14%  Similarity=0.149  Sum_probs=181.9

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcc
Q 013845          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPL  188 (435)
Q Consensus       111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~RPl  188 (435)
                      ++++|+|++||++.....++++.|.++|.+..  .++.   .+++.+++..++++++|++|||+|+|+|++|+  |+||+
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~--~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl   75 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHG--VSWL---PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPT   75 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCC--CCHH---HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCc
Confidence            46899999999999999999999999985432  2332   24567789999999999999999999999987  69999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHH
Q 013845          189 ASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSF  267 (435)
Q Consensus       189 ~sG~Is~~~A~~~~i~l~~lgl~l~~~-lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~  267 (435)
                      |+|++|+++|+.+++++.++|+.++.. +|+.+.....+..+++.++||.     ++||++++ |..+++..|..+++|.
T Consensus        76 ~sG~is~~~a~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g  149 (279)
T PRK12869         76 PVGLVNRKEALAVGSALSALGTALGFLLLGPLTALFIALGWFFYAVVYTI-----WLKPRTWL-NIVIGGFAGNAAALAG  149 (279)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCc-----ccccCChH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999988876 7876543333445677889995     48999985 6667777666555444


Q ss_pred             HHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 013845          268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV  347 (435)
Q Consensus       268 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~  347 (435)
                      +...    .| ..  +...+++.+.+.+|..+.....+++|+|+|+++|+||+|+++|++++.+....+..+........
T Consensus       150 ~~a~----~g-~~--~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~  222 (279)
T PRK12869        150 YASG----TG-SL--DLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLL  222 (279)
T ss_pred             HHHH----hC-CC--CHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHH
Confidence            3321    12 22  23344445566667766666667899999999999999999999998876655544333322222


Q ss_pred             HHhhhhhhHHHHHHHHHHHHHH-HHHHHHhhccCCChhhhHH-HHHHHHH
Q 013845          348 GASSSFQLVKLVSIIGHSTLAF-LLWLRAQTVDLSNNASTYS-FYMFIWK  395 (435)
Q Consensus       348 g~~~~~~~~~l~~~~g~~vl~~-~l~~~~~~~d~~~~~~~~~-f~~~iw~  395 (435)
                      +. ...   +.++.++..+... .+..+.+.++.++++++++ |+..+|.
T Consensus       223 ~~-~~~---g~~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~  268 (279)
T PRK12869        223 YL-YYI---GLIGLILVAILSAALMATSIRALLNPTKEEAWKMFKASSPY  268 (279)
T ss_pred             HH-hhc---cHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence            22 222   2344444433333 3444445555555544433 3333443

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=4.1e-31  Score=260.35  Aligned_cols=205  Identities=24%  Similarity=0.324  Sum_probs=163.2

Q ss_pred             HHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccc
Q 013845          111 KLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLAS  190 (435)
Q Consensus       111 ~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~s  190 (435)
                      ++++|++++||+++....++.+.|.+++.+..++  +.   .+++++++.++.++++|++||++|+|+|++|+|+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~--~~---~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPP--IK---TLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCc--HH---HHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            3678999999999999999999999888543222  21   134567788899999999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHHH
Q 013845          191 GDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIH  270 (435)
Q Consensus       191 G~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~~  270 (435)
                      |++++++++.++.++.++|+.+++.+|++.+.+++ .+.+++++|+.     ++||++.++|+++++..|..+..|....
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Y~~-----~~k~~~~lg~~~vg~~~g~~~~~g~~a~  150 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLINIEAFLFAL-GAYVLMFLYAW-----KLKPLPFIGNVVVALLTGATPIYGAIAV  150 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhh-----cccCCcchhhHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999988888988777664 46678999996     5899888899999888876655665321


Q ss_pred             HHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHH
Q 013845          271 FQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYA  336 (435)
Q Consensus       271 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l  336 (435)
                            +. ..+  ..+. .....++..++++.||++|+|+|+++|+||+|+++|++++.++....
T Consensus       151 ------~~-~~~--~~~~-~~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~  206 (277)
T PRK12883        151 ------GR-IGL--AGYL-AICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIF  206 (277)
T ss_pred             ------cc-ccH--HHHH-HHHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHH
Confidence                  21 111  1122 12234456678899999999999999999999999999998865544

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=2.6e-30  Score=256.58  Aligned_cols=232  Identities=19%  Similarity=0.197  Sum_probs=181.6

Q ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccc--cCCCCCc
Q 013845          112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDK--VNKPDLP  187 (435)
Q Consensus       112 l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~--e~D~--~nkp~RP  187 (435)
                      +++|++++||+++..+.+++++|.++|... ..+++.   .+++++++.+++++++|.+|||+|+  |+|+  .++|+||
T Consensus         3 ~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~-~~~~~~---~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~~r~   78 (293)
T PRK06080          3 FKAWLELARPKTLPAAFAPVLVGTALAYWL-GSFHPL---LALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGPLRA   78 (293)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHc-CCccHH---HHHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCCccc
Confidence            678999999999999999999999998532 334543   2567788999999999999999999  5675  4568999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHH----HhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHH
Q 013845          188 LASGDLSMGTGLAITLTLSLTSLAIAL----SLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (435)
Q Consensus       188 l~sG~Is~~~A~~~~i~l~~lgl~l~~----~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~  263 (435)
                      +++|++|+++++.++..+.+++++++.    ..+++.+.+++ ++++.+++||.  ||.|+|++++ ||+.++..+|...
T Consensus        79 l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~-~~~~~~~~Ys~--~p~~~~~~gl-ge~~~~~~~G~~~  154 (293)
T PRK06080         79 IGRGGISPKQVKRAAIAFFGLAALLGLYLVAVSGWWLLLLGL-LCIAAAILYTG--GPKPYGYTGL-GELFVGVFFGLVI  154 (293)
T ss_pred             ccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHhhhhcC--CCCccCCCCc-HHHHHHHHHHHHH
Confidence            999999999999888877776655543    34655555543 57778899995  8889988875 8998888888766


Q ss_pred             HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 013845          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (435)
Q Consensus       264 ~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~  343 (435)
                      +.|.+.. +    .+.  .+...++..++..+++.++++.||++|+|+|++.|+||+|+++|++++.+++..++.++|+.
T Consensus       155 ~~~~~~~-~----~~~--~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~  227 (293)
T PRK06080        155 VLGTYYL-Q----AGT--VDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLC  227 (293)
T ss_pred             HHHHHHH-h----cCC--CCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHH
Confidence            6554332 1    111  23345666777788899999999999999999999999999999999999999999999887


Q ss_pred             HHHHHHhhhhhhHHH
Q 013845          344 SVIVGASSSFQLVKL  358 (435)
Q Consensus       344 ~ll~g~~~~~~~~~l  358 (435)
                      .+........+++.+
T Consensus       228 ~~~~~~~~~~~~~~l  242 (293)
T PRK06080        228 IVLLALLGLASPWGL  242 (293)
T ss_pred             HHHHHHHhhhhHHHH
Confidence            766655544455433

>PRK13595 ubiA prenyltransferase; Provisional

Probab=99.98  E-value=4.7e-30  Score=252.12  Aligned_cols=264  Identities=20%  Similarity=0.203  Sum_probs=184.2

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCc
Q 013845          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLP  187 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RP  187 (435)
                      ....++.+++++||.+|+.++.++.+|...+... .+..+..   +++++......+.+.|++|||+|+|+|++|+|+||
T Consensus         8 ~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~-~~~~~~~---~~l~~~~~~p~n~~~~giND~fD~eiDa~Npr~~~   83 (292)
T PRK13595          8 ILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHL-YTLDPGV---LPLLLYLTLPFNLLIYGLNDLADRETDAASPRKGG   83 (292)
T ss_pred             hhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCc-ccchhHH---HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCCCCC
Confidence            4566788999999999999999999999777432 2221132   45667788889999999999999999999999999


Q ss_pred             ccccccCHHHHHHHHHHHHHH----HHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHH
Q 013845          188 LASGDLSMGTGLAITLTLSLT----SLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (435)
Q Consensus       188 l~sG~Is~~~A~~~~i~l~~l----gl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~  263 (435)
                      +++|++|+++++.+...+.++    ++.+++..|+....+.+ ++.+++++||  .||+|+|++|++++++. ...|.+.
T Consensus        84 i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l~~~~~~l~~-v~~~l~~~YS--~pPlRlK~rp~l~~l~~-~~~g~p~  159 (292)
T PRK13595         84 WQGARLSPGEVRPLLRAVLLLNAPFLLYLALLLPPAATLLLL-LYAALFVGYS--LPPLRFKARPFLDGLSN-AAYALPL  159 (292)
T ss_pred             CCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHc--cCccchhcCcchhHHHH-HHHHHHH
Confidence            999999999998865544433    55666777877666553 5778999999  49999999999998876 3344432


Q ss_pred             HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHH
Q 013845          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGV  343 (435)
Q Consensus       264 ~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~  343 (435)
                      ..|.      .+.|...   .+..  .....+|+.+++++++++|+|+||+.|+||+|+++|+|++.+++..++.++-+.
T Consensus       160 ~~~~------~~~g~~~---~~~~--l~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~~~  228 (292)
T PRK13595        160 ALPA------LALGAPV---PWPP--LLALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAGAL  228 (292)
T ss_pred             HHHH------HHcCCcc---hHHH--HHHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHHHH
Confidence            2221      1223221   1222  234457789999999999999999999999999999999999887766554333


Q ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHHHHHHHHHHH
Q 013845          344 SVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYMFIWKASVID  400 (435)
Q Consensus       344 ~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~~iw~l~~~~  400 (435)
                      ....  -.+...   .    ..+....+..+-+ .|.+..++-+.+..++|--+...
T Consensus       229 ~~~~--~~~~~~---~----~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~g  275 (292)
T PRK13595        229 LWPV--SRLTAL---A----LWLICGGMALALW-RRPTPETAHRLYPLSIVTPWIVG  275 (292)
T ss_pred             HHHh--cchHHH---H----HHHHHHHHHHHHh-cCCCHHHHhccchHHHHHhHHHH
Confidence            2211  111111   1    1111122222222 46655566777777888665444

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=1.4e-29  Score=253.83  Aligned_cols=239  Identities=13%  Similarity=0.096  Sum_probs=183.2

Q ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC----CCCc
Q 013845          112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK----PDLP  187 (435)
Q Consensus       112 l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk----p~RP  187 (435)
                      ++.|++++||++...+.+++++|.++|.....++++..   .++++++++++++++|.+|||+|.+.|+.++    +.|+
T Consensus         3 ~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~~---~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~~~~~   79 (317)
T PRK13387          3 AKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWLL---FLAFMVAMLAFDIATTAINNYMDFKKALDTADYVGIGNG   79 (317)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccCCcch
Confidence            67899999999999999999999999964444566542   5677889999999999999999987655544    6899


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHH
Q 013845          188 LASGDLSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (435)
Q Consensus       188 l~sG~Is~~~A~~~~i~l~~lgl~----l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~  263 (435)
                      +++|.+++++++..++.+..++++    +.+..|+..+.+++ ++++.++.||.  ||+++||++ +||+.++..+|+.+
T Consensus        80 i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~g~~~l~igl-~g~~~~~~Yt~--gP~~l~y~g-LGe~~v~i~~G~~~  155 (317)
T PRK13387         80 IGQHGLKPRNVLTVILLMYVVAAILGVYLCMNTSWLLLVIGL-ICFAIGILYTG--GPLPLSRMP-LGEIFSGLTMGFGI  155 (317)
T ss_pred             hccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHH-HHHHHhhhhcC--CCcccccCc-cHHHHHHHHHHHHH
Confidence            999999999999988877776665    55566766666664 68889999995  899999999 59999888888877


Q ss_pred             HHHHHHHHHHHhhCC--------Ccc--chH----HHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhH
Q 013845          264 QFSFFIHFQKYVLGR--------PVV--ITR----PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENV  329 (435)
Q Consensus       264 ~~G~~~~~~~~~~g~--------~~~--~~~----~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a  329 (435)
                      ..|.+.. ++...+.        ...  ++.    .+++..+...+.+..+++.||+||+|+|+++|+||+|+++|+|++
T Consensus       156 v~g~~yv-~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~~~a  234 (317)
T PRK13387        156 FLLAVYI-NTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGREKG  234 (317)
T ss_pred             HHHHHHH-hcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcHHhH
Confidence            6665443 2110000        000  000    112245566667778899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhHHH
Q 013845          330 LRLCVYALFFAYGVSVIVGASSSFQLVKL  358 (435)
Q Consensus       330 ~~l~~~l~~~ay~~~ll~g~~~~~~~~~l  358 (435)
                      .+++..++..+|+..+........+++.+
T Consensus       235 ~~l~~~l~~~a~l~~~~~v~~g~lp~~~l  263 (317)
T PRK13387        235 VVLFAILFYASYLAIAVIVLMGYISPWAL  263 (317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            99999999999987766555444454433

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=99.97  E-value=8.3e-30  Score=251.51  Aligned_cols=253  Identities=17%  Similarity=0.141  Sum_probs=175.3

Q ss_pred             HHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcccc
Q 013845          113 HALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLAS  190 (435)
Q Consensus       113 ~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~RPl~s  190 (435)
                      ++|+|++||+++..+.++++.|.++|.... +.++.   .+++++++.+++++++|++|||+|+|+|++|+  |+||+++
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~-~~~~~---~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~s   76 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGA-LVNPP---LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVT   76 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCC-CCCHH---HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCC
Confidence            469999999999999999999999985432 23332   24667889999999999999999999999976  6999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHH-HHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHH
Q 013845          191 GDLSMGTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFL-LGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  268 (435)
Q Consensus       191 G~Is~~~A~~~~i~l~~lgl~l-~~~lg~~~l~l~l~~~~~-l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~  268 (435)
                      |++|+++|..+++++.++|+.+ ....|+....++++ +++ .+++||.     .+||++.+ +..+++..|..++++.+
T Consensus        77 G~is~~~a~~~~~~~~~~g~~il~~~~~~~~~~l~~~-~~~~~~~~Yt~-----~lKr~~~~-~~~v~~~~g~~~~l~g~  149 (280)
T TIGR01473        77 GRISPREALAFGLLLGVLGVAILAAFVNPLAALLGLF-GIFFYVIVYTI-----WLKRRTPQ-NTVIGGFAGAVPPLIGW  149 (280)
T ss_pred             CCcCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHhhcCh-----hhccCCch-hHHHHHHHHHHHHHHHH
Confidence            9999999999999999999884 44578776666543 443 4889994     28999986 44566666655443333


Q ss_pred             HHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 013845          269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  348 (435)
Q Consensus       269 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g  348 (435)
                      ..     .++..  +...+++...+.+|+.......+++|+|+|+++|+||+|+++|+|++.+..............+.+
T Consensus       150 ~a-----~~g~~--~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~  222 (280)
T TIGR01473       150 AA-----VTGSI--SLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLA  222 (280)
T ss_pred             HH-----hcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            22     12222  233444455666777776667778999999999999999999999887765544333322222223


Q ss_pred             HhhhhhhHHHHHH-HHHHHHHHHHHHHHhhccCC-Chhhh
Q 013845          349 ASSSFQLVKLVSI-IGHSTLAFLLWLRAQTVDLS-NNAST  386 (435)
Q Consensus       349 ~~~~~~~~~l~~~-~g~~vl~~~l~~~~~~~d~~-~~~~~  386 (435)
                      .....++   .|. .+..+.+.++.++.+..+.+ |++.+
T Consensus       223 ~~~~~~~---~y~~~~~~~~~~~l~~~~~~~~~~~~~~~~  259 (280)
T TIGR01473       223 FLGGTGW---LYLIVATLLGALFLYLAFKFYRDPTDRKKA  259 (280)
T ss_pred             HHhcccH---HHHHHHHHHHHHHHHHHHHHhcCCCcHHHH
Confidence            2222232   333 23333344555565566655 44443

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=99.97  E-value=2.2e-29  Score=251.14  Aligned_cols=274  Identities=12%  Similarity=0.127  Sum_probs=187.1

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CC
Q 013845          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PD  185 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~  185 (435)
                      .+.++++|++++||+.+....++++.|.++|...  +.++..   ++.++++..+.++++|++|||+|+|+|+.++  ++
T Consensus         9 ~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~--~~~~~~---~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~   83 (306)
T PRK13362          9 WEASLKDYIQVTKPGIIFGNVISVAGGFFLASKG--HVDPVL---MLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRN   83 (306)
T ss_pred             HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccC--CCCHHH---HHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCC
Confidence            4567899999999999999999999999998432  234321   4566789999999999999999999999764  59


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHH
Q 013845          186 LPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ  264 (435)
Q Consensus       186 RPl~sG~Is~~~A~~~~i~l~~lgl~l~-~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~  264 (435)
                      ||+++|++|+++|+.+++++.++|+.++ ...|+....++.+..+++.++||.     ++||++.+++++.+...+.++.
T Consensus        84 RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~n~~~~~l~~~~~~~~~~~Yt~-----~lKr~t~~~~~vgg~~ga~p~l  158 (306)
T PRK13362         84 RVTVTGEISLGEALGFGLALGVAGFGLLAAFTNPLAALFAAFGYVVYVGVYSL-----YLKRNSVYGTLVGSLSGAMPPV  158 (306)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhH-----HHhccCcHhHHHHHHHHHHHHH
Confidence            9999999999999999999999998865 445776655543334456789994     3899999888755544455555


Q ss_pred             HHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHH
Q 013845          265 FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVS  344 (435)
Q Consensus       265 ~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~  344 (435)
                      +|+.+.      ++..  +...+++.+.+.+|+...+...+++|+|||+++|+||+|+++|++++.+..... .+..+..
T Consensus       159 ~G~~a~------~g~~--~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~-~~~~~~~  229 (306)
T PRK13362        159 VGYCAV------TGQF--DAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLY-ILVFALV  229 (306)
T ss_pred             HHHHHH------cCCC--cHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHH-HHHHHHH
Confidence            666542      2222  233455566777888888888899999999999999999999999887643332 2222221


Q ss_pred             HHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhc-c-C-CChhhhHHHHHHHHHHHHHHHHHH
Q 013845          345 VIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTV-D-L-SNNASTYSFYMFIWKASVIDLFNL  404 (435)
Q Consensus       345 ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~-d-~-~~~~~~~~f~~~iw~l~~~~yl~l  404 (435)
                      .+.....  +..++.+.+...++...+++...+. . . ++++  ....+|.|++.|+..+++
T Consensus       230 s~l~~~~--g~~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~--~a~~~f~~S~~yl~~~~~  288 (306)
T PRK13362        230 TALLPLA--GYTGIGYLAVAAATSLWWLAMALKGYRHAVDDTV--WARQLFGFSILTITALSV  288 (306)
T ss_pred             HHHHHHH--ccccHHHHHHHHHHHHHHHHHHHHHHhccCCchH--HHHHHHHHHHHHHHHHHH
Confidence            1111111  1123344444444444444443332 1 1 2222  233456677666665544

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=2.5e-28  Score=242.60  Aligned_cols=271  Identities=15%  Similarity=0.109  Sum_probs=175.8

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC-------
Q 013845          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN-------  182 (435)
Q Consensus       110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~n-------  182 (435)
                      +++++|++++||++......++.+|.++|......+++..   ++++++++.++..++|++|||.|+|.|+.|       
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~~---~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rtm~r   79 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWEL---TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENTLTR   79 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHHH---HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhhhhc
Confidence            4688999999999988877877788888732111234421   232344555555778999999999999865       


Q ss_pred             --C--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhch----HHHHHHHHHHHHHHhhccCCCCccccccCCCc--hh
Q 013845          183 --K--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQS----PPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFL--AG  252 (435)
Q Consensus       183 --k--p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~----~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~--g~  252 (435)
                        |  ++||+++|++|+++++.+.+++.++|+.++..++.    ..+.++ +.+.++++.|+.      .||...+  +.
T Consensus        80 ~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~~~~~~~l~-~~~~~~~~~Y~~------~kr~~~~p~~~  152 (297)
T PRK12871         80 YWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPNSLYVFVIM-LYSYGIEAFYQV------KKRNQKYPVAQ  152 (297)
T ss_pred             cccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhc------ccccccccHHH
Confidence              3  48999999999999999999999998888765543    222222 346677888884      2443222  22


Q ss_pred             HHHH-HHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHH
Q 013845          253 MCMV-TVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR  331 (435)
Q Consensus       253 l~i~-~~~g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~  331 (435)
                      + ++ ...+.++..| ++.     .|.   .+...++..++..+|+.+++++||++|+|||++.|+||+|+++|++++.+
T Consensus       153 l-~G~~~~~~~~~~g-~~~-----~g~---~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~  222 (297)
T PRK12871        153 L-LGRTDFTLFPAAG-YLC-----YGQ---PDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMY  222 (297)
T ss_pred             H-HHHHHHHHHHHHH-HHH-----hCC---CcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHH
Confidence            2 23 2223333334 221     232   22334455567778899999999999999999999999999999998886


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHHH--HHHHHHHHHHHHH
Q 013845          332 LCVYALFFAYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFYM--FIWKASVIDLFNL  404 (435)
Q Consensus       332 l~~~l~~~ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~~--~iw~l~~~~yl~l  404 (435)
                      +...+..+.....+  +.....++  ..+....++.+..+.++.+..+.+|+++|-+-|.  +....+|..-+++
T Consensus       223 ~i~~~~~l~~l~~~--~~~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~  293 (297)
T PRK12871        223 WVTGFTALHFLAAI--FFLRELGP--IALYGFLAGFVLLAGANLYLWKEKSQDAGMKILPLYHASLVIYAVSIIL  293 (297)
T ss_pred             HHHHHHHHHHHHHH--HHHHHhhH--HHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55544433332222  22222222  1122222445566778888888888888755443  3555566555544

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=99.97  E-value=1.1e-27  Score=238.38  Aligned_cols=235  Identities=17%  Similarity=0.131  Sum_probs=182.9

Q ss_pred             HHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCC
Q 013845          109 LKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDL  186 (435)
Q Consensus       109 ~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e--~D~~nkp~R  186 (435)
                      +++++.|++.+||+++..+++++++|.++|.....++++..   .++++++++++++++|.+|||+|.+  .|+. ++. 
T Consensus         9 ~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~-~~~-   83 (304)
T PRK07419          9 PSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLDQ---FITFLLAAILILAWENLSNDVFDADTGIDKN-KFH-   83 (304)
T ss_pred             ccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHHHHHHHhccCCcc-ccc-
Confidence            46788899999999999999999999999965444677643   5678899999999999999999987  6774 222 


Q ss_pred             cccccccCHHHHHHHHHHHHHHHHHH----HHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHH
Q 013845          187 PLASGDLSMGTGLAITLTLSLTSLAI----ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (435)
Q Consensus       187 Pl~sG~Is~~~A~~~~i~l~~lgl~l----~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~  262 (435)
                      ...++..++++....+.++..+++.+    .+..|++.+.++ +++++.+++||.  ||+++|++++ |++.++..+|+.
T Consensus        84 ~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~g~~~l~ig-~~g~~~~~~YT~--gP~~l~y~gL-GE~~v~l~~G~l  159 (304)
T PRK07419         84 SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQSDWTVLGLV-LLCCFLGYLYQG--PPFRLGYQGL-GEPLCFLAFGPL  159 (304)
T ss_pred             CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH-HHHHHHhheccC--CCcccCCCCc-hHHHHHHHHHHH
Confidence            23455557888888777666555543    444576555555 468889999995  9999999996 999999888988


Q ss_pred             HHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHH
Q 013845          263 YQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (435)
Q Consensus       263 ~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~  342 (435)
                      .+.|.+.+ +    .+  .++...+...+..++.+.++.+.||+||+|+|+++|+||+|+++|+|++.+++..+...+|+
T Consensus       160 ~v~g~~yv-~----t~--~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~  232 (304)
T PRK07419        160 AVAAALYS-Q----TP--SWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYA  232 (304)
T ss_pred             HHHHHHHH-h----cC--CCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHH
Confidence            77766543 2    22  23344556666777788889999999999999999999999999999999999999999998


Q ss_pred             HHHHHHHhhhhhhHHHH
Q 013845          343 VSVIVGASSSFQLVKLV  359 (435)
Q Consensus       343 ~~ll~g~~~~~~~~~l~  359 (435)
                      ..+........+++.++
T Consensus       233 ~~i~~v~~g~~p~~~Ll  249 (304)
T PRK07419        233 LELLPVLLGFWPWTTLL  249 (304)
T ss_pred             HHHHHHHHhhhHHHHHH
Confidence            87666555445655443

>PLN02922 prenyltransferase

Probab=99.96  E-value=2.4e-27  Score=237.10  Aligned_cols=237  Identities=18%  Similarity=0.205  Sum_probs=179.0

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCCc
Q 013845          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDLP  187 (435)
Q Consensus       110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e--~D~~nkp~RP  187 (435)
                      ++++.|++.+||+++..+++++++|.++|......+++..   .++++++++++++++|.+|||+|.+  .|+.++..+.
T Consensus        13 ~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~~---~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~~~~~~~   89 (315)
T PLN02922         13 SRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDARR---YGTLLLSSVLVITWLNLSNDAYDADTGVDKNKKESVV   89 (315)
T ss_pred             cHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHHH---HHHHHHHHHHHHHHHHHHhhhhHhccCcCcccCCCCC
Confidence            5678899999999999999999999999965434677643   5678899999999999999999986  5775432222


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHH---H--hchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHH
Q 013845          188 LASGDLSMGTGLAITLTLSLTSLAIAL---S--LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLV  262 (435)
Q Consensus       188 l~sG~Is~~~A~~~~i~l~~lgl~l~~---~--lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~  262 (435)
                      -..|  ++++.+..++.+.++++...+   .  .|++.+.++ +++++.+++||.  ||+++|++++ |++.++..+|..
T Consensus        90 ~~~~--s~~~v~~~~~~~~~la~~g~~ll~~~~~~~~~l~iG-~~g~~~~~~Yt~--gP~pl~y~gL-GE~~v~i~fG~l  163 (315)
T PLN02922         90 NLVG--SRRGVLAAAIGCLALGAAGLVWASLVAGNIRVILLL-AAAILCGYVYQC--PPFRLSYKGL-GEPLCFAAFGPL  163 (315)
T ss_pred             Cccc--CHHHHHHHHHHHHHHHHHHHHHHHHHccChHHHHHH-HHHHHHHHHHhc--CCcccccCcc-hHHHHHHHHHHH
Confidence            2234  899998877766666543221   1  244445454 468899999995  9999999997 999998888887


Q ss_pred             HHHHHHHHHHHHhhCC-Cc---cchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHH
Q 013845          263 YQFSFFIHFQKYVLGR-PV---VITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALF  338 (435)
Q Consensus       263 ~~~G~~~~~~~~~~g~-~~---~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~  338 (435)
                      .+.|.|.. ++...+. ..   .++...++..+...+++.++++.||+||+|+|++.|+||+|+++|+|++.++...++.
T Consensus       164 ~v~g~y~~-~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~  242 (315)
T PLN02922        164 ATTAFYLA-LASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRVVRWAVL  242 (315)
T ss_pred             HHHHHHHH-hcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHHHHHHHH
Confidence            77776553 2211111 00   1234455677788888999999999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhhhhhhH
Q 013845          339 FAYGVSVIVGASSSFQLV  356 (435)
Q Consensus       339 ~ay~~~ll~g~~~~~~~~  356 (435)
                      .+|+..+........+++
T Consensus       243 ~~y~~~i~~v~~~~~p~~  260 (315)
T PLN02922        243 LLYSLLAALGLLKALPLP  260 (315)
T ss_pred             HHHHHHHHHHHHhhhhHH
Confidence            999877666555444543

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=99.96  E-value=9.4e-28  Score=237.05  Aligned_cols=224  Identities=15%  Similarity=0.089  Sum_probs=174.5

Q ss_pred             ccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccC--CCCCcccccccCH
Q 013845          120 RPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVN--KPDLPLASGDLSM  195 (435)
Q Consensus       120 Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e--~D~~n--kp~RPl~sG~Is~  195 (435)
                      ||+++..++.++++|.++|.... .+++..   .++++++++++++++|.+|||+|.+  .|+.+  +|.|++++|.+++
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~-~f~~~~---~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~is~   76 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLH-AFVWLV---ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLITP   76 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcC-CccHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCCCH
Confidence            89999999999999999996543 677643   5678899999999999999999985  46533  4789999999999


Q ss_pred             HHHHHHHHHHHHHHHHH----HHHhch-----HHH-HHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHH
Q 013845          196 GTGLAITLTLSLTSLAI----ALSLQS-----PPL-IFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF  265 (435)
Q Consensus       196 ~~A~~~~i~l~~lgl~l----~~~lg~-----~~l-~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~  265 (435)
                      ++++..++++..+++++    .+..++     +.+ .++ +++++.++.||.  ||+++|++++ ||+.++..+|...+.
T Consensus        77 ~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg-~~~~~~~~~Yt~--gP~~l~y~gL-GE~~v~i~~G~l~v~  152 (284)
T TIGR00751        77 REVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALG-ALCIAAAITYTV--GSKPYGYAGL-GDISVLVFFGPLAVL  152 (284)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHH-HHHHHHhHhhcC--CCCccccCch-HHHHHHHHHHHHHHH
Confidence            99998887777655444    334453     133 344 468888999995  8999999997 999999999987777


Q ss_pred             HHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHH
Q 013845          266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSV  345 (435)
Q Consensus       266 G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~l  345 (435)
                      |.+.. +    .+.  ++...++..+..++++.++++.||+||+|+|+++|+||+|+++|+|+++++...++..+|++.+
T Consensus       153 g~~yv-q----~~~--~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~  225 (284)
T TIGR00751       153 GTQYL-Q----AHR--VDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTF  225 (284)
T ss_pred             HHHHH-h----cCC--CCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHH
Confidence            76543 2    222  2333445556667778889999999999999999999999999999999999999889988766


Q ss_pred             HHHHhhhhhhHHH
Q 013845          346 IVGASSSFQLVKL  358 (435)
Q Consensus       346 l~g~~~~~~~~~l  358 (435)
                      +.......+++.+
T Consensus       226 ~~~~~~~~p~~~l  238 (284)
T TIGR00751       226 VFMLATPISWWCV  238 (284)
T ss_pred             HHHHHhhchHHHH
Confidence            5554444455433

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.96  E-value=1.5e-29  Score=240.03  Aligned_cols=277  Identities=16%  Similarity=0.103  Sum_probs=202.2

Q ss_pred             hHHHHHHHHHHHhhhccchHHHHHHHH---HHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc
Q 013845          105 WDVLLKKLHALYVFTRPFAMIGTIVGI---TSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV  181 (435)
Q Consensus       105 ~~~~~~~l~ay~~l~Rp~~~~~~~l~~---~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~  181 (435)
                      .+.-+.+++.|.|++|.++++++.+..   .+..++|...  ...+.+ .-+.++-+|+++|++++|.+||..|+|+|++
T Consensus        57 ~~~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAda--g~~p~~-~mL~LFG~GAllMRgAGCtINDlwDkdlD~K  133 (353)
T KOG1381|consen   57 VASSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADA--GLLPSI-KMLALFGVGALLMRGAGCTINDLWDKDLDAK  133 (353)
T ss_pred             hhcCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCC--Cccchh-HHHHHhcccHHHhccCCceehhhhhhhhhhh
Confidence            333445699999999999999997754   4555555422  122221 1134566799999999999999999999997


Q ss_pred             CC--CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHH
Q 013845          182 NK--PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF  259 (435)
Q Consensus       182 nk--p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~  259 (435)
                      .+  +.||++||++|+++|+.+..+.+.+|+.+...+|+....++. .++.+.+.|+.      +||++++++++.+..+
T Consensus       134 VeRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqLn~ysi~lg~-~sl~~v~~ypl------~kr~TY~pq~vLgltf  206 (353)
T KOG1381|consen  134 VERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQLNWYSIALGA-SSLALVITYPL------MKRFTYWPQLVLGLTF  206 (353)
T ss_pred             HhhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhccHHHHHhcc-cccccEEEeeh------hhhcchhHHHHHhhhc
Confidence            65  489999999999999999999999999999999998887764 58888999996      8999999998776554


Q ss_pred             HHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHH
Q 013845          260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  339 (435)
Q Consensus       260 g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~  339 (435)
                      .....+|+-+     + ++.. .+...+-+++--.+|++.+++++++||.++|.+.|+|+.+.++|++...|++..- ..
T Consensus       207 nwGAllGw~A-----~-~g~~-~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~-a~  278 (353)
T KOG1381|consen  207 NWGALLGWCA-----L-KGSL-SPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFG-AA  278 (353)
T ss_pred             chhhhhcchh-----h-cCcc-ChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhh-HH
Confidence            4433344322     2 2221 2222333455556789999999999999999999999999999998877765432 22


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccCCChhhhHHHH-HHHHHHHHHHHH
Q 013845          340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDLSNNASTYSFY-MFIWKASVIDLF  402 (435)
Q Consensus       340 ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~~~~~~~~~f~-~~iw~l~~~~yl  402 (435)
                      .......+|+.+...|   .+..+..+.+..+..|..++|+||+++|.++| .+.|-.++..+.
T Consensus       279 ~ia~La~aG~~s~q~~---pyy~~lg~~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli~~~~  339 (353)
T KOG1381|consen  279 QIASLAAAGIASDQTW---PYYAALGAVAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLILFSG  339 (353)
T ss_pred             HHHHHHHhhhccCCCc---hHHHHHHHHHHHHHhheeeeecCChHHHHHHHHhcCcchHHHHHH
Confidence            2223344566555544   33444556678899999999999999976554 566666554443

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=99.96  E-value=2.4e-26  Score=224.93  Aligned_cols=236  Identities=17%  Similarity=0.179  Sum_probs=182.1

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--cccc----CC
Q 013845          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKV----NK  183 (435)
Q Consensus       110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e--~D~~----nk  183 (435)
                      ++.+.|++++|||+++.++.+++.|.++|......+++.   ..++++++++++++..|..|||.|.+  .|..    .+
T Consensus         6 ~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~~---~~ll~Li~~~~iq~~vN~~NdY~D~~KG~D~~g~~~~~   82 (303)
T COG1575           6 SKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNLL---VALLALIAAILLQILVNLANDYFDYKKGTDTHGPDRLK   82 (303)
T ss_pred             HHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCCCCcccc
Confidence            456889999999999999999999999997654445553   36788999999999999999999985  5642    33


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHH----HHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHH
Q 013845          184 PDLPLASGDLSMGTGLAITLTLSLTSLAIA----LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF  259 (435)
Q Consensus       184 p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~----~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~  259 (435)
                      .++-+...+++++..+.+.+.+...+.+++    ...+++.+.++ +++++.++.||.  +|+++++.|+ |++.++.++
T Consensus        83 ~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s~~~~l~lG-~l~~~~g~~YTg--Gp~PlgY~gL-GEi~~~vff  158 (303)
T COG1575          83 QSGLIVRQSMKPALILSLALFLLAGLALLGVILAALSDWLVLLLG-LLCIAAGILYTG--GPFPLGYMGL-GEIFVGVFF  158 (303)
T ss_pred             ccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH-HHHHHheeeecc--CCcCcccCCH-HHHHHHHHH
Confidence            356666777888888777766665544443    34455534444 569999999995  8999999987 999999888


Q ss_pred             HHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHH
Q 013845          260 GLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  339 (435)
Q Consensus       260 g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~  339 (435)
                      |...+.|.+.. |+      ..++...+...++..+.+.+++..||+||+|+|+++|++|+||++|+++++.+...++..
T Consensus       159 G~l~v~g~~yi-qt------~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~  231 (303)
T COG1575         159 GPLIVLGAYYI-QT------GRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVV  231 (303)
T ss_pred             HHHHHHHHHHH-hc------ccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHH
Confidence            98776665542 21      123344566677777778889999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhhhhhHHHH
Q 013845          340 AYGVSVIVGASSSFQLVKLV  359 (435)
Q Consensus       340 ay~~~ll~g~~~~~~~~~l~  359 (435)
                      +|++.++.......+++.++
T Consensus       232 a~l~~~~~~i~~~~~~~~ll  251 (303)
T COG1575         232 AYLAIVIFVILGLFPVWGLL  251 (303)
T ss_pred             HHHHHHHHHHHHhchHHHHH
Confidence            99887765555555554433

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=99.96  E-value=3.1e-26  Score=226.37  Aligned_cols=229  Identities=15%  Similarity=0.144  Sum_probs=173.6

Q ss_pred             HHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccc--ccccCCCCCcccccc
Q 013845          115 LYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVE--IDKVNKPDLPLASGD  192 (435)
Q Consensus       115 y~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e--~D~~nkp~RPl~sG~  192 (435)
                      |++.+||+++..+++++++|.++|......+++..   .+++++++++.|+++|.+|||+|.+  .|+.+. . ...++.
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~~---~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~-~-~~~~~~   76 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLDR---FALFLIAAILILAWINLTNDVFDSDTGIDRFKL-H-SIVNLT   76 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHHH---HHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc-C-Cccccc
Confidence            67899999999999999999999965444577643   5678899999999999999999986  477432 1 122233


Q ss_pred             cCHHHHHHHHHHHHHHHHH----HHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHH
Q 013845          193 LSMGTGLAITLTLSLTSLA----IALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFF  268 (435)
Q Consensus       193 Is~~~A~~~~i~l~~lgl~----l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~  268 (435)
                      .++++......++..+++.    +.+..|++.+.++ +++++.++.||.  ||+++|++++ |++.++..+|...+.|.+
T Consensus        77 ~~~~~v~~~~~~~~~ia~~~g~~L~~~~~~~~l~lg-~~g~~~~~~Yt~--gP~~l~y~gL-GE~~v~l~~G~l~v~g~~  152 (285)
T TIGR02235        77 GSRSLVFWLANFFLLIGLVGIAALSWRWQITVLALV-GLCCFLGYLYQG--PPFRLGYQGL-GEPICWLCFGPLAIAAAL  152 (285)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHhhcC--CCcccCCCCc-cHHHHHHHHHHHHHHHHH
Confidence            4567777666665555444    4444564444454 468899999995  9999999997 999999999987776655


Q ss_pred             HHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHH
Q 013845          269 IHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVG  348 (435)
Q Consensus       269 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g  348 (435)
                      .. +    .+  .++...++..+..++.+.++.+.||+||+|+|+++|+||+|+++|+|++.++...++..+|+..+...
T Consensus       153 yv-q----t~--~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v  225 (285)
T TIGR02235       153 YA-Q----SQ--SFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAV  225 (285)
T ss_pred             HH-h----CC--cCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHH
Confidence            43 2    22  23444556677777888899999999999999999999999999999999999999999998776665


Q ss_pred             HhhhhhhHHHH
Q 013845          349 ASSSFQLVKLV  359 (435)
Q Consensus       349 ~~~~~~~~~l~  359 (435)
                      .....+|+.++
T Consensus       226 ~~~~~p~~~ll  236 (285)
T TIGR02235       226 IGGFLPWTTLL  236 (285)
T ss_pred             HHhhhHHHHHH
Confidence            55445555443

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=1.7e-26  Score=227.41  Aligned_cols=217  Identities=21%  Similarity=0.188  Sum_probs=153.4

Q ss_pred             HHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccccc
Q 013845          112 LHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASG  191 (435)
Q Consensus       112 l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG  191 (435)
                      +|.+++++||++|+.+.+++..|+++|. +.+  ++.+   ++.++.-....+.+.|.+|||+|+|.|+.|++.+.. .|
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~-~~~--~~~~---l~~~l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g~-~g   73 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLAG-GEI--DWLF---VVGTVFFLIPYNLAMYGINDVFDYESDLRNPRKGGV-EG   73 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHHC-CCC--ChHH---HHHHHHHHHHHHHHHHhhhhhhhhhcCCCCcccCCC-CC
Confidence            3678999999999999999999999993 222  2321   222222244445555677999999999999764333 58


Q ss_pred             ccCHHHHHHHHHHHHH-----HHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHH
Q 013845          192 DLSMGTGLAITLTLSL-----TSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS  266 (435)
Q Consensus       192 ~Is~~~A~~~~i~l~~-----lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G  266 (435)
                      .+++++.........+     .++.+....+++.+.++ .++++.++.||.  ||.|+|++++.++++.+..+.....+|
T Consensus        74 ~i~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~l~-~~ai~~~~~YS~--~p~rlk~~gl~d~~t~~~~f~~~~v~G  150 (282)
T PRK13105         74 AVLDRAMHRTTLWASVVTTVPFLVVLLAVGSWASGLVL-AVSVFAVVAYSA--PGLRFKERPFLDSLTSSTHFVSPALYG  150 (282)
T ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH-HHHHHHHHHhcC--CCccccccchHHHHHHHHHHHHHHHHH
Confidence            8999988444333332     23333333355555444 468889999995  899999999987765444333223344


Q ss_pred             HHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHH
Q 013845          267 FFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVI  346 (435)
Q Consensus       267 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll  346 (435)
                      .+.     + ++.  .+...++....+.+|+.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.+++++.+.
T Consensus       151 ~~~-----~-~~~--~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~~  222 (282)
T PRK13105        151 LVL-----A-GAP--FTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLMLA  222 (282)
T ss_pred             HHH-----h-hcc--ccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHHH
Confidence            332     1 322  23345566777788899999999999999999999999999999999999999988888776653

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=7.5e-27  Score=227.98  Aligned_cols=269  Identities=16%  Similarity=0.205  Sum_probs=193.0

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--C
Q 013845          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--D  185 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp--~  185 (435)
                      .+.++++|++++||+......++...|+++|.++  ..++.   .+++++++..+..+++|++|+++|+|+|++++|  +
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~--~~~~~---l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~~   88 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRG--SINPL---LLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTRK   88 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccc--cccHH---HHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhccC
Confidence            5688999999999999999999999999999752  23443   257788999999999999999999999999875  9


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHH
Q 013845          186 LPLASGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ  264 (435)
Q Consensus       186 RPl~sG~Is~~~A~~~~i~l~~lgl~l~-~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~  264 (435)
                      ||+++|++++++++.++.++.++|+.+. +..|+.+..++++..++.+++||..     +||++.+ |+++|+..|..++
T Consensus        89 RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~vn~laa~l~~~gi~~Yv~vYT~~-----lKR~T~~-NiviGg~aGa~Pp  162 (304)
T COG0109          89 RPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAAVLGLFGIFFYVVVYTLW-----LKRRTPQ-NIVIGGFAGAMPP  162 (304)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh-----ccCCccc-ceeeeeccccccc
Confidence            9999999999999999999999999887 7789888777777788899999974     8999986 7888888876555


Q ss_pred             -HHHHHHHHHHhhCCCccchHHHHHHHHHHH----HHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHH
Q 013845          265 -FSFFIHFQKYVLGRPVVITRPLIFAAAIIS----TISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFF  339 (435)
Q Consensus       265 -~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~----~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~  339 (435)
                       +|+.++     .| ....+.+.++.++|+|    +|++++..-   +|+   +++|+.++|++-|++.+.+.......+
T Consensus       163 liGwaAv-----tg-~~~~~a~~Lf~IiF~WtPpHfwALAl~~~---~DY---~~AgiPMlPvv~G~~~t~~~I~~y~~~  230 (304)
T COG0109         163 LIGWAAV-----TG-SISLGAILLFAIIFLWTPPHFWALALKYK---DDY---KAAGIPMLPVVKGERRTKRQILLYTLA  230 (304)
T ss_pred             cceeeee-----eC-CCCchHHHHHHHHHHhccHHHHHHHHHHH---HHH---HHcCCCcccccccHHHHHHHHHHHHHH
Confidence             676542     23 3344445566666665    345543322   233   999999999999999887753332222


Q ss_pred             HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhhccC-CChhhhHHHHHHHHHHHHHHHHHH
Q 013845          340 AYGVSVIVGASSSFQLVKLVSIIGHSTLAFLLWLRAQTVDL-SNNASTYSFYMFIWKASVIDLFNL  404 (435)
Q Consensus       340 ay~~~ll~g~~~~~~~~~l~~~~g~~vl~~~l~~~~~~~d~-~~~~~~~~f~~~iw~l~~~~yl~l  404 (435)
                      .....++...   .+..++.|.+...+++..+++.+.+.-. +|++  +...+|..++.|+..++.
T Consensus       231 l~~~sl~~~~---~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~--~A~klF~~S~~yL~~lf~  291 (304)
T COG0109         231 LAPVSLLLAL---LGYVGYLYLVVATLLGAWFLALAWKLYRKDDRK--WARKLFKYSIIYLALLFV  291 (304)
T ss_pred             HHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHHhCccHH--HHHHHHHHHHHHHHHHHH
Confidence            2222222222   1223445666666666766666655522 2322  333455666666555533

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.95  E-value=1.1e-25  Score=222.46  Aligned_cols=229  Identities=21%  Similarity=0.219  Sum_probs=160.6

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCccc
Q 013845          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLA  189 (435)
Q Consensus       110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~  189 (435)
                      +.+++++++.|+.+...+..++..+.....  ..+..+     ....+++.++.+.++|++||+.|+|+|++|+|+||.+
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~--~~~~~~-----~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASL--LLGLPI-----SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHH--HHcChh-----HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH
Confidence            356889999999998877776655432110  011111     3456778899999999999999999999999999998


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHH-HHhchHHHHHHHHHHHHHHhhccCCCCcc-ccccCCCchhHHHHHHHHHHHHHHH
Q 013845          190 SGDLSMGTGLAITLTLSLTSLAIA-LSLQSPPLIFGLIVWFLLGTAYSVDLPFL-RWKTKPFLAGMCMVTVFGLVYQFSF  267 (435)
Q Consensus       190 sG~Is~~~A~~~~i~l~~lgl~l~-~~lg~~~l~l~l~~~~~l~~~Ys~~~Ppl-rlKr~~~~g~l~i~~~~g~~~~~G~  267 (435)
                      +++...+.+..+..+...+++.+. ...|++.+.+++ ++.++++.||.  ||. ++||.|.++|++++..+|..+.++.
T Consensus        75 s~~~~~~~~~~l~~i~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~Ys~--~~~~~lk~~p~~~~~~vg~~~g~~~~~~~  151 (285)
T PRK12872         75 SETKAYGLFLLLNVLGLYLGAYLLAVIGGPKFALIFI-IPLILGILYSV--FFKRRLKRIPLFKNLVVSLLWALSPLILG  151 (285)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHhC--hhHHHHhhhhhHhhHHHHHHHHHHHHHHH
Confidence            655444444444444444444442 334766666554 57778999995  554 6899999999999988887665433


Q ss_pred             HHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHHHHHHH
Q 013845          268 FIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIV  347 (435)
Q Consensus       268 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~  347 (435)
                      +..     .+..  ++...+....+++++..+++.++|++|+|+|+++|+||+|+++|+|++.+++..+..++++..+..
T Consensus       152 ~~~-----~~~~--~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~  224 (285)
T PRK12872        152 VYY-----YQLT--IFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILG  224 (285)
T ss_pred             HHh-----cccc--cchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHH
Confidence            221     1211  222344444555566778899999999999999999999999999999999888887777766554


Q ss_pred             HHhhhhhh
Q 013845          348 GASSSFQL  355 (435)
Q Consensus       348 g~~~~~~~  355 (435)
                      ......++
T Consensus       225 ~~~~~~~~  232 (285)
T PRK12872        225 VYTGLLPL  232 (285)
T ss_pred             HHHhHhhH
Confidence            44333344

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.95  E-value=5e-26  Score=219.64  Aligned_cols=188  Identities=29%  Similarity=0.407  Sum_probs=145.8

Q ss_pred             HHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhccccccccc--CCCCCcccccccCHHHHHHHHHH
Q 013845          127 TIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKV--NKPDLPLASGDLSMGTGLAITLT  204 (435)
Q Consensus       127 ~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~--nkp~RPl~sG~Is~~~A~~~~i~  204 (435)
                      +..+++.|...+...  ..++.   .+....++.++.+.++|.+||+.|+|+|+.  |+|+||+++|+++++++..++.+
T Consensus         4 ~~~~~l~~~~~~~~~--~~~~~---~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~~~~~   78 (257)
T PF01040_consen    4 SFLPVLAGLALASGG--PFNWP---IFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALIFALI   78 (257)
T ss_pred             HHHHHHHHHHHHHcC--CCCHH---HHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHHHHHH
Confidence            445566664444332  23332   245566777799999999999999999999  88999999999999999999999


Q ss_pred             HHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCCccchH
Q 013845          205 LSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITR  284 (435)
Q Consensus       205 l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~~~g~~~~~~~  284 (435)
                      +.++++++++..|+..+.+.+ +..+.+++||   ||+|+||++++++++++..++..+..|++.      .++..  +.
T Consensus        79 ~~~l~l~l~~~~~~~~~~~~~-~~~~~~~~Ys---~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~--~~  146 (257)
T PF01040_consen   79 LLLLGLLLALLLGPWFLLILL-LGFLLGLLYS---PPLRLKRRPLWGELVVALVFGLLILLGAYA------AGGDP--PP  146 (257)
T ss_pred             HHHHHHHHHHhcCchhHHHHH-HHHHHHHHHh---hhhhhcceeccchhhHHHhhhHhhhhhhhh------cCCcc--cH
Confidence            999999998888877777664 4666779999   788999999999998888777666566543      12221  22


Q ss_pred             HHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHH
Q 013845          285 PLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLR  331 (435)
Q Consensus       285 ~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~  331 (435)
                      +.+....+..++.......+|++|+|+|++.|+||+|+++|++++++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            33444444456667777888999999999999999999999999987

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PLN02776 prenyltransferase

Probab=99.95  E-value=5.1e-25  Score=221.03  Aligned_cols=194  Identities=15%  Similarity=0.065  Sum_probs=147.7

Q ss_pred             hhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCC--CCCcccccccCH
Q 013845          118 FTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNK--PDLPLASGDLSM  195 (435)
Q Consensus       118 l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nk--p~RPl~sG~Is~  195 (435)
                      ++||+......++.+.|+++|.+..+  ++.   .+++++++..++++++|++||++|+|+|++|+  ++||+|+|++|+
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~--~~~---~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris~   75 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAI--DLP---GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRISV   75 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCC--CHH---HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCCH
Confidence            47899999999999999999854332  222   24667889999999999999999999999876  599999999999


Q ss_pred             HHHHHHHHHHHHHHHHH-HHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHH-HHHHHHHHHHHH
Q 013845          196 GTGLAITLTLSLTSLAI-ALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGL-VYQFSFFIHFQK  273 (435)
Q Consensus       196 ~~A~~~~i~l~~lgl~l-~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~-~~~~G~~~~~~~  273 (435)
                      ++|+.+++++.++|+.+ ++.+|+.+..++++..+++...||.      +||++.+ |..+|++.|. ++.+|+.++   
T Consensus        76 ~~A~~~~~~l~~~g~~~l~~~~n~l~~~l~~~~~~ly~~vYt~------lKR~t~~-~~~lG~~~Ga~ppL~Gw~Av---  145 (341)
T PLN02776         76 PHAVAWAVVVGAAGVALLAYKTNMLTAGLGAGNILLYAFVYTP------LKQIHPA-NTWVGAVVGAIPPLMGWAAA---  145 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHh------HccCCch-hHHHHHHHHHHHHHHHHHHH---
Confidence            99999999999999854 5668888877765434455778995      8999987 6778888884 455666442   


Q ss_pred             HhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecc--hhhHHH
Q 013845          274 YVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLG--KENVLR  331 (435)
Q Consensus       274 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG--~k~a~~  331 (435)
                        .| ...  ...+++.+.+.+|+........+.|.|||+++|++++|+.-+  ++.+..
T Consensus       146 --tg-~~~--~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~  200 (341)
T PLN02776        146 --SG-QLD--AGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALV  200 (341)
T ss_pred             --cC-CCC--HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHH
Confidence              23 222  234455566677777666666778888999999999999764  444433

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.93  E-value=1.8e-24  Score=213.30  Aligned_cols=218  Identities=23%  Similarity=0.262  Sum_probs=139.3

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCC-CChHHHHHHHHHHHHH--HHHHHHHhhhhhcccccccccCCC
Q 013845          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFAD-LTPKYFMEFLKALLSA--VLMNNYVGTVNQVADVEIDKVNKP  184 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~-~~~~~l~~lll~ll~~--~l~~~a~~~iNd~~D~e~D~~nkp  184 (435)
                      ...+++.++++.||+++..++.++++|.++|....++ +++..     +++++.  +..+.+.|++||++|+|+||.|++
T Consensus         4 ~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~~~-----~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~pr   78 (282)
T PRK12875          4 LGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSPAA-----VALFAYFLFPANVFLYGVNDVFDADTDELNPK   78 (282)
T ss_pred             hHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccHHH-----HHHHHHHHHHHHHHHhcchhhhhhhccccCCC
Confidence            3467888999999999999999999999999654322 33321     112221  334556677999999999999876


Q ss_pred             CC---ccc-ccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHH
Q 013845          185 DL---PLA-SGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFG  260 (435)
Q Consensus       185 ~R---Pl~-sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g  260 (435)
                      .+   |++ +|+....   ...++...+++.+....++....+ ++..+++++.||.  ||+|+|++++.+ +.+.+.+.
T Consensus        79 k~~~r~~~~s~~~~~~---~~~~l~~~l~l~l~~~~~~~~~~~-ll~~i~~~~~YS~--pP~rlk~~p~~~-~~~~g~~~  151 (282)
T PRK12875         79 KDREREVRYRGDRRVL---VAVALSGALALAFLLVLPPAAWPA-LLAFLVLSVEYSA--PPLRFKTTPVLD-SLSNGLYI  151 (282)
T ss_pred             ccCCCCccHHHHHHHH---HHHHHHHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHcC--CCccchhccHHH-HHHHHHHH
Confidence            54   333 2211111   112223334444444444433332 2457789999994  999999999854 33322222


Q ss_pred             HHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHHHH
Q 013845          261 LVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFA  340 (435)
Q Consensus       261 ~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~a  340 (435)
                      .+...+++..      .+.  .+...+  .+...+|+.+++++||+||+|+|+++|+||+|+++|++++.+++.....++
T Consensus       152 ~~~~~~y~~~------tg~--~~~~~l--~~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a  221 (282)
T PRK12875        152 LPGVAAYALV------SGS--LPPLLA--VAGGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLA  221 (282)
T ss_pred             HHHHHHHHHH------cCC--CcHHHH--HHHHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHH
Confidence            2222333321      222  232232  223457888999999999999999999999999999999988777766655


Q ss_pred             HHHHHHH
Q 013845          341 YGVSVIV  347 (435)
Q Consensus       341 y~~~ll~  347 (435)
                      ..+....
T Consensus       222 ~~~~~~~  228 (282)
T PRK12875        222 AAAFAAV  228 (282)
T ss_pred             HHHHHHH
Confidence            5444443

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=2.2e-23  Score=205.90  Aligned_cols=178  Identities=19%  Similarity=0.145  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhcc
Q 013845          157 LLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYS  236 (435)
Q Consensus       157 ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys  236 (435)
                      .+.+.+...++|++||++|+|+|++|+|+||.+    +++.+..+.++..++|+.+++..|++.  ++ +++.+.+++||
T Consensus        64 ~~~~~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~g~~l--l~-ll~~l~g~lYS  136 (307)
T PRK13591         64 CIAGGLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMDGMLL--LA-FLPFITGYLYS  136 (307)
T ss_pred             HHHHHHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHHhHHH--HH-HHHHHHHHHhc
Confidence            345677889999999999999999999999987    788999999999999999999888643  33 35777899999


Q ss_pred             CCC--Cc--cccccCCCchhHHHHHHHHHHHHHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhh
Q 013845          237 VDL--PF--LRWKTKPFLAGMCMVTVFGLVYQFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGD  312 (435)
Q Consensus       237 ~~~--Pp--lrlKr~~~~g~l~i~~~~g~~~~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD  312 (435)
                      .++  +|  +|+|+++.+||+.++..+|.....+.    +.  ....  +. .......+.....++++.+||++|+|||
T Consensus       137 ~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~----g~--~~~~--~~-~~~~i~l~~~~~l~~~~iindirDiEGD  207 (307)
T PRK13591        137 KGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIA----GS--YCGS--LI-PVGLIFLFFGVKLFINSCVYDFKDVKGD  207 (307)
T ss_pred             CCCCCCCccccccCCCchhHHHHHHHHHHHHHHHH----Hh--hhhh--HH-HHHHHHHHHHHHHHHHHHHHHhhhhHhH
Confidence            632  24  48899999999999988886432211    00  0110  00 0111111111113466789999999999


Q ss_pred             HhcCCcccceecchhhHHHHHHHHHHHHHHHHHHHHHh
Q 013845          313 KQFGFQSISSKLGKENVLRLCVYALFFAYGVSVIVGAS  350 (435)
Q Consensus       313 ~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~~~ll~g~~  350 (435)
                      ++.|+||+|+++|++++.++...+..++|++.++....
T Consensus       208 r~~G~kTLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~  245 (307)
T PRK13591        208 TLAGIKTLPVSLGEQKTRNLLLGIHLFSHLVLGIALIF  245 (307)
T ss_pred             HHcCCeeEEEEECHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988888888776554443

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.92  E-value=5.2e-23  Score=201.74  Aligned_cols=177  Identities=14%  Similarity=0.167  Sum_probs=125.7

Q ss_pred             HHHHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 013845          152 EFLKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLL  231 (435)
Q Consensus       152 ~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l  231 (435)
                      +.+++.+..++..+++|++|||+|+|+||+|+|+||+|||++|+++|+.+++++.++++.+....     ...+ ...+.
T Consensus        47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~-----~i~i-~~~~i  120 (299)
T PRK13592         47 QEFVGVFTVFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF-----MNNV-GWFLF  120 (299)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHHHH
Confidence            45667777889999999999999999999999999999999999999999998877777765544     1111 23334


Q ss_pred             Hhhc-----cCCCCccccccCCCchhHHHHHHHHHHHHHH--HHHH-HHHHhhCCCccchHHHHHHHHHHHHHHHHHHHH
Q 013845          232 GTAY-----SVDLPFLRWKTKPFLAGMCMVTVFGLVYQFS--FFIH-FQKYVLGRPVVITRPLIFAAAIISTISAVMSLL  303 (435)
Q Consensus       232 ~~~Y-----s~~~PplrlKr~~~~g~l~i~~~~g~~~~~G--~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i  303 (435)
                      .+.|     +.     ++|+.++.||+.++...|.++..|  ++.. .+....|.+. .....+++.+...+.++++|+.
T Consensus       121 ~~lY~~lm~a~-----~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~-~~~~~~~l~l~afl~~l~rEI~  194 (299)
T PRK13592        121 LYIYGTLMSFW-----FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPL-LSLPTVLLAFTMYFPSLIWEVC  194 (299)
T ss_pred             HHHHHHHHHHH-----HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccch-hhHHHHHHHHHHHHHHHHHHHH
Confidence            5556     64     589999999999988777655333  2221 0011122211 1111122233334457899999


Q ss_pred             hccCCchhhHhcCCcccceecchhhHHHHHHHHHHHHHH
Q 013845          304 KDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALFFAYG  342 (435)
Q Consensus       304 ~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~~ay~  342 (435)
                      +|++| |||++ |.+|+|+++|.|++.++...+..+..+
T Consensus       195 KdieD-~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~  231 (299)
T PRK13592        195 RKIRA-PKDET-EYVTYSKLFGYKKATRFIEVVTLLDIL  231 (299)
T ss_pred             HhhcC-Ccccc-CCeeechhccchhHHHHHHHHHHHHHH
Confidence            99999 88886 599999999999998887766555443

>PRK08238 hypothetical protein; Validated

Probab=99.87  E-value=1.8e-20  Score=197.20  Aligned_cols=191  Identities=25%  Similarity=0.293  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--C
Q 013845          106 DVLLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--K  183 (435)
Q Consensus       106 ~~~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~n--k  183 (435)
                      ++.+.++++|++++|||.+.+.++.++ +.+.+.. ..+  +..+..+++++++..++.+++|++||+.|+|+||+|  |
T Consensus       185 ~~~~~~~~~~~~l~Rp~q~~kn~l~~~-p~l~a~~-~~~--~~~~~~~~~~f~~~~l~~sa~~~~ND~~D~e~Dr~~~rk  260 (479)
T PRK08238        185 PPRPARLRTWLKALRVHQWAKNLLVFV-PLLAAHQ-FGD--LQALLAALLAFLAFSLCASAVYILNDLLDLEADRAHPRK  260 (479)
T ss_pred             CCCchHHHHHHHHhCCcHHHHHHHHHH-HHHHhcc-cCC--hHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccCCCC
Confidence            345568999999999999999988644 7766633 212  221223567788888999999999999999999998  5


Q ss_pred             CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHH
Q 013845          184 PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVY  263 (435)
Q Consensus       184 p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~  263 (435)
                      |+||++||++|+++|+.++.+++++|+.+++.+|+..... ++..+++.++||.     ++||+++++++++++.++..+
T Consensus       261 ~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l~~~~~~~-~~~~~~~~~~Ys~-----~lKr~~~~~~~~la~~~~lr~  334 (479)
T PRK08238        261 RRRPFASGALPIPFGLAAAPLLLLAGLALALALGPAFLLV-LLAYLALTLAYSL-----RLKRKVLVDVLTLAALYTLRI  334 (479)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHhhH-----HhcCCccccchHHHHHHHHHH
Confidence            7999999999999999999999999999998888754443 3467788899996     589999999998887777666


Q ss_pred             HHHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCC
Q 013845          264 QFSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGF  317 (435)
Q Consensus       264 ~~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi  317 (435)
                      ..|..+      .+  ...+  .|++ ++..++.....+.|...|.++++..|.
T Consensus       335 ~~G~~a------~~--~~~s--~wll-~~~~~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        335 IAGAAA------IG--VALS--FWLL-AFSMFFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             HHHHHH------hc--cCHH--HHHH-HHHHHHHHHHHHHHhHHHHHHHHhcCC
Confidence            666432      12  1122  2222 122233445577888889988888886

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.86  E-value=1.9e-19  Score=178.60  Aligned_cols=150  Identities=25%  Similarity=0.336  Sum_probs=117.0

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccC--CCC
Q 013845          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVN--KPD  185 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~n--kp~  185 (435)
                      ..+++++|++++||+.++...+.... .+++.... +..  .+...++++++..++++++|++||++|+|+||+|  ||+
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~~-~~~a~~~~-~~~--~~~~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~   82 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFAA-PIFAGNLL-NPG--ALLKVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRN   82 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHHH-HHHHHhhc-ccc--hHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCC
Confidence            45678999999999999998875543 34443211 111  1123456677778889999999999999999996  689


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHHH
Q 013845          186 LPLASGDLSMGTGLAITLTLSLTSLAIALSLQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQF  265 (435)
Q Consensus       186 RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~~  265 (435)
                      ||++||++++++|+.+++++.++|+.+++.+|+....+. +..+++.++||.     ++||++.+++++++..++..+..
T Consensus        83 RPlasG~is~~~A~~~~~~l~~~~l~la~~l~~~~~~~~-~~~~~~~~~Ys~-----~lK~~~~~d~l~va~~~~lr~~~  156 (295)
T PRK12324         83 RPIASGVVSVSLAYILAVVLLVASLALAYLLSPKLALVL-LVYLVLNLAYSF-----KLKHQPVLDVFCIASGFVLRAIA  156 (295)
T ss_pred             CCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhhH-----HhcCCchhhHHHHHHHHHHHHHH
Confidence            999999999999999999999999999888887666554 457788899996     58999999888887666655545


Q ss_pred             HH
Q 013845          266 SF  267 (435)
Q Consensus       266 G~  267 (435)
                      |.
T Consensus       157 G~  158 (295)
T PRK12324        157 GG  158 (295)
T ss_pred             HH
Confidence            54

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.54  E-value=5.3e-15  Score=144.35  Aligned_cols=194  Identities=12%  Similarity=0.119  Sum_probs=137.1

Q ss_pred             HHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccccccccCCC--CCc
Q 013845          110 KKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADVEIDKVNKP--DLP  187 (435)
Q Consensus       110 ~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp--~RP  187 (435)
                      ..++.|+||.+|+.....+++...|+++|..+   +++.   .++.+.+|..+..+++|.+||+++.+.|..++|  .||
T Consensus        92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p---~s~~---~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp  165 (409)
T KOG1380|consen   92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGP---FSFP---TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP  165 (409)
T ss_pred             chHHHHHHhcccceEEEEeeeccccccccccC---CCcc---hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence            45789999999998888888888999888654   3322   367788999999999999999999999998875  999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHH-hchHHHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHHHHHHH-H
Q 013845          188 LASGDLSMGTGLAITLTLSLTSLAIALS-LQSPPLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVFGLVYQ-F  265 (435)
Q Consensus       188 l~sG~Is~~~A~~~~i~l~~lgl~l~~~-lg~~~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~g~~~~-~  265 (435)
                      +++|++++..|+.++.+....|+.+..+ +|+....++..=.++++++|+.      +||..+ .|..+|.+.|.+++ +
T Consensus       166 lv~g~isp~hA~~fAt~~g~~G~slL~~gvNpl~a~Lga~Ni~LY~~vYTP------lKrihi-inTWvGavVGAIPPLM  238 (409)
T KOG1380|consen  166 LVRGRISPLHAVTFATLTGTAGVSLLAFGVNPLAAALGAGNIFLYAGVYTP------LKRIHI-INTWVGAVVGAIPPLM  238 (409)
T ss_pred             cccCccChHHHHHHHHHhccccceeeeecccHHHHHHhhcchheeeccccc------hhhhhh-hhhHHHHHhccCCccc
Confidence            9999999999999999988888776544 7877766665445668888984      899887 47777777776555 6


Q ss_pred             HHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceec
Q 013845          266 SFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKL  324 (435)
Q Consensus       266 G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~l  324 (435)
                      |+.+.     .|. ......++-.+++.|-+-.-..+-.+++  +|-.++|.+++++.-
T Consensus       239 GwAAa-----sg~-l~~ga~iLa~~LyaWQfPHFnaLS~~lR--~DYs~~GY~Mma~~n  289 (409)
T KOG1380|consen  239 GWAAA-----SGL-LDPGAMILAGILYAWQFPHFNALSWNLR--NDYSKAGYRMMAVTN  289 (409)
T ss_pred             hhhhh-----ccC-CCccHHHHHHHHHHhcccchhhhhhhhc--hhhhhccEEEEEeec
Confidence            76432     122 1111122222233332211112222221  122899999999864

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.45  E-value=1.9e-13  Score=127.88  Aligned_cols=230  Identities=17%  Similarity=0.180  Sum_probs=159.8

Q ss_pred             HHHHHHHHHhhhccchHHHHHHHHHHHHHHhcccCCCCChHHHHHHHHHHHHHHHHHHHHhhhhhcccc--cccccCCCC
Q 013845          108 LLKKLHALYVFTRPFAMIGTIVGITSIAILPLQSFADLTPKYFMEFLKALLSAVLMNNYVGTVNQVADV--EIDKVNKPD  185 (435)
Q Consensus       108 ~~~~l~ay~~l~Rp~~~~~~~l~~~~G~~lA~~~~~~~~~~~l~~lll~ll~~~l~~~a~~~iNd~~D~--e~D~~nkp~  185 (435)
                      ...+.+.|+-..||+....++.+..+|.++|.......++... ..+++.++.+..+.++|..|.|+|.  .+|+...-+
T Consensus        57 ~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~~d~~l~-~~fl~a~avlavh~agnlvntyfdf~kgid~kkadd  135 (359)
T KOG4581|consen   57 TFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGAEDFRLA-TFFLCAFAVLAVHCAGNLVNTYFDFIKGIDHKKADD  135 (359)
T ss_pred             HHHHHHHHHhhhcccccccccchHhhhhHHHHhhccccchhHH-HHHHHHhhheeeecccchhhhhhhhhhccccccccc
Confidence            4578899999999999999999999999999754222222222 2456777888899999999999997  488877779


Q ss_pred             CcccccccCHHHHHHHHHHHHHHHHHH---HHHhchH---HHHHHHHHHHHHHhhccCCCCccccccCCCchhHHHHHHH
Q 013845          186 LPLASGDLSMGTGLAITLTLSLTSLAI---ALSLQSP---PLIFGLIVWFLLGTAYSVDLPFLRWKTKPFLAGMCMVTVF  259 (435)
Q Consensus       186 RPl~sG~Is~~~A~~~~i~l~~lgl~l---~~~lg~~---~l~l~l~~~~~l~~~Ys~~~PplrlKr~~~~g~l~i~~~~  259 (435)
                      |.++..-+.+.+...++..+...|...   ...+++.   .+.+.-+.++.-.++|+.+   +.+|+..+ |++++.+.+
T Consensus       136 rtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~lsp~klehlaliyfggls~sflytgg---igfkyial-gdliili~f  211 (359)
T KOG4581|consen  136 RTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVLSPAKLEHLALIYFGGLSGSFLYTGG---IGFKYIAL-GDLIILILF  211 (359)
T ss_pred             hhHHHHhcChhheehhhHHHHHhcchHHHHHHhCCHhhhhhhhhhhccCcccceeEecc---cceEEEec-cCEEEEEee
Confidence            999999999999988888777665433   2233331   2222223455667889965   45787765 777676666


Q ss_pred             HHHHH-HHHHHHHHHHhhCCCccchHHHHHHHHHHHHHHHHHHHHhccCCchhhHhcCCcccceecchhhHHHHHHHHHH
Q 013845          260 GLVYQ-FSFFIHFQKYVLGRPVVITRPLIFAAAIISTISAVMSLLKDIPDEDGDKQFGFQSISSKLGKENVLRLCVYALF  338 (435)
Q Consensus       260 g~~~~-~G~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~k~a~~l~~~l~~  338 (435)
                      |++.. +++ + .|+   | ...+.+ +. -.+.+.+-+-++.+-|+.+|.|.||++|+-|+++.+|+..+-.++..++.
T Consensus       212 gpiavlfaf-~-~q~---g-~l~~~~-l~-yaiplalnteailhsnntrd~dndr~agivtlailig~t~s~ily~~llf  283 (359)
T KOG4581|consen  212 GPIAVLFAF-A-IQT---G-HLAIFP-LG-YAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGPTASHILYAMLLF  283 (359)
T ss_pred             chHHHHHHH-H-Hhc---C-ceeEEe-eh-heeeeccchHHHhccCCCcccccccccCeEEEEEeecccHHHHHHHHHHH
Confidence            75433 332 2 121   2 222211 10 01122233557788899999999999999999999999888878888888


Q ss_pred             HHHHHHHHHHHh
Q 013845          339 FAYGVSVIVGAS  350 (435)
Q Consensus       339 ~ay~~~ll~g~~  350 (435)
                      ..|.+..+.+.-
T Consensus       284 ~py~lf~i~~~~  295 (359)
T KOG4581|consen  284 APYLLFFIFALH  295 (359)
T ss_pred             HHHHHHHHHHHH
Confidence            888776655543

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=91.38  E-value=1.1  Score=45.07  Aligned_cols=50  Identities=18%  Similarity=0.092  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhcccccccccCCCCCcccccccCHHHHHHHHHHH
Q 013845          154 LKALLSAVLMNNYVGTVNQVADVEIDKVNKPDLPLASGDLSMGTGLAITLTL  205 (435)
Q Consensus       154 ll~ll~~~l~~~a~~~iNd~~D~e~D~~nkp~RPl~sG~Is~~~A~~~~i~l  205 (435)
                      ++..+......+..+..|++.|.|+|+.|+++-+..  ++..+.++.+...+
T Consensus       179 ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLav--rLG~~~~~~l~~~l  228 (303)
T COG1575         179 LLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAV--RLGRKNARKLYAAL  228 (303)
T ss_pred             HHHHHHHHHHHHHHHHhcccccchhHHhcCCcceee--eeccHhHHHHHHHH
Confidence            345566677778888999999999999998744332  45555555544333

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=89.31  E-value=3.8  Score=40.32  Aligned_cols=35  Identities=23%  Similarity=0.285  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHhhhhhcccccccccCC-CCCcccccc
Q 013845          158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD  192 (435)
Q Consensus       158 l~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~  192 (435)
                      +..++.......+||.-|+|.|+.++ +.-|..-|+
T Consensus       168 ~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~  203 (285)
T PRK12872        168 VFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGK  203 (285)
T ss_pred             HHHHHHHHHHHHHHhcccchhHHHcCCcccchhcch
Confidence            34445566667889999999999754 566665554

>PRK13591 ubiA prenyltransferase; Provisional

Probab=88.90  E-value=1.5  Score=44.29  Aligned_cols=66  Identities=26%  Similarity=0.333  Sum_probs=37.9

Q ss_pred             hhhhcccccccccCC-CCCcccccccCHHHHHHHHHHHHHHH---HHHHHHhc-----hHHHHHHHHHHHHHHhhccC
Q 013845          169 TVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTS---LAIALSLQ-----SPPLIFGLIVWFLLGTAYSV  237 (435)
Q Consensus       169 ~iNd~~D~e~D~~nk-p~RPl~sG~Is~~~A~~~~i~l~~lg---l~l~~~lg-----~~~l~l~l~~~~~l~~~Ys~  237 (435)
                      .+||+.|.|.|+.+. +.-|+.=|   ++.+..+...+.+++   .+++...|     +...+..+..++++.+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIAFEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHcC
Confidence            689999999999875 45666544   344443333222222   22222222     22344455667888889985

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=87.19  E-value=6.8  Score=39.07  Aligned_cols=58  Identities=17%  Similarity=0.179  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccCC-CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhc
Q 013845          157 LLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ  217 (435)
Q Consensus       157 ll~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg  217 (435)
                      .++..+...+...+||+-|.|.||.+. +.-|.   ++.++.+..+...+.+++.++....+
T Consensus       166 ~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv---~lG~~~a~~~~~~l~~~a~~~~~~~~  224 (282)
T PRK13105        166 LAAFFLWGMASHAFGAVQDVVADREAGIASIAT---VLGARRTVRLAVGLYAAAAVLMLALP  224 (282)
T ss_pred             HHHHHHHHHHHHHHHhCcchHhHHHcCCccchH---HhcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445577888999999999999764 34443   56678888877777766665544444

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=86.60  E-value=6.1  Score=39.14  Aligned_cols=37  Identities=24%  Similarity=0.161  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccccC-CCCCcccccc
Q 013845          156 ALLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD  192 (435)
Q Consensus       156 ~ll~~~l~~~a~~~iNd~~D~e~D~~n-kp~RPl~sG~  192 (435)
                      ..++.++...+-..+|++.|+|.|+.. .|.-|+.-|+
T Consensus       165 l~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~  202 (281)
T TIGR01474       165 LYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGD  202 (281)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhh
Confidence            345666677778889999999999975 4777777774

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=86.39  E-value=15  Score=36.52  Aligned_cols=57  Identities=16%  Similarity=0.059  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHhhhhhcccccccccCC-CCCcccccccCHHHHHHHHHHHHHHHHHHHHHhc
Q 013845          158 LSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGDLSMGTGLAITLTLSLTSLAIALSLQ  217 (435)
Q Consensus       158 l~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~Is~~~A~~~~i~l~~lgl~l~~~lg  217 (435)
                      ++..+...+...+||+-|+|.|+..+ +.-|.   ++..+.+..+..++..++..+....+
T Consensus       172 ~a~~l~~~~~~~in~i~Die~D~~aGi~Tlav---~lG~~~a~~~~~~~~~~a~~~~~~~~  229 (282)
T PRK12875        172 AGGWLWAMGMHTFSAIPDIEPDRAAGIRTTAT---VLGERRTYAYCAACWLLAAAAFAAVD  229 (282)
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHcCCccchh---hccHhhHHHHHHHHHHHHHHHHHHHH
Confidence            44456677778999999999999653 45444   45566676666666555544433333

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=86.29  E-value=6.6  Score=39.57  Aligned_cols=42  Identities=14%  Similarity=0.061  Sum_probs=27.7

Q ss_pred             HHHHHHHhhhhhcccccccccCCC-CCcccccccCHHHHHHHHHHH
Q 013845          161 VLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTL  205 (435)
Q Consensus       161 ~l~~~a~~~iNd~~D~e~D~~nkp-~RPl~sG~Is~~~A~~~~i~l  205 (435)
                      .+........||+-|+|.||.+.+ .-|.   ++.++.+..+...+
T Consensus       184 gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~ly~~l  226 (304)
T PRK07419        184 GLATSLILFCSHFHQVEDDLAAGKRSPIV---RLGTKRGAQLLPWI  226 (304)
T ss_pred             HHHHHHHHHHcCCcchhhHHHcCCcceee---eechHhHHHHHHHH
Confidence            355667778899999999998754 4443   44555555444333

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=85.20  E-value=3.7  Score=41.53  Aligned_cols=51  Identities=18%  Similarity=0.180  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccccCCC-CCcccccccCHHHHHHHHHHHHHHH
Q 013845          156 ALLSAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLSLTS  209 (435)
Q Consensus       156 ~ll~~~l~~~a~~~iNd~~D~e~D~~nkp-~RPl~sG~Is~~~A~~~~i~l~~lg  209 (435)
                      ..+...+........||+-|+|.||.+.+ .-|.   ++.++.+..+...+.+++
T Consensus       194 ~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v---~lG~~~a~~l~~~l~~~a  245 (317)
T PRK13387        194 ISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVY---YIGREKGVVLFAILFYAS  245 (317)
T ss_pred             HHHHHHHHHHHHHHhcCCccchhHHHcCCeeeee---eEcHHhHHHHHHHHHHHH
Confidence            44556666777789999999999998754 4444   455666655544444433

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=84.04  E-value=6  Score=39.10  Aligned_cols=36  Identities=17%  Similarity=0.154  Sum_probs=26.3

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccC-CCCCcccccc
Q 013845          157 LLSAVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD  192 (435)
Q Consensus       157 ll~~~l~~~a~~~iNd~~D~e~D~~n-kp~RPl~sG~  192 (435)
                      .+..++.+..-..+||..|+|.|+.. .|.-|+.-|+
T Consensus       164 ~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~  200 (282)
T TIGR01475       164 GIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGI  200 (282)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhch
Confidence            34555666667789999999999864 4677776663

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=83.80  E-value=10  Score=37.57  Aligned_cols=37  Identities=11%  Similarity=0.047  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHhhhhhcccccccccCC-CCCcccccc
Q 013845          156 ALLSAVLMNNYVGTVNQVADVEIDKVNK-PDLPLASGD  192 (435)
Q Consensus       156 ~ll~~~l~~~a~~~iNd~~D~e~D~~nk-p~RPl~sG~  192 (435)
                      ..+..++....-...|++.|+|.|+.+. |.-|+.-|+
T Consensus       170 l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~  207 (285)
T PRK12847        170 LYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGN  207 (285)
T ss_pred             HHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhcc
Confidence            3445566677777889999999999754 667766664

>PRK13592 ubiA prenyltransferase; Provisional

Probab=83.38  E-value=9.1  Score=38.46  Aligned_cols=41  Identities=12%  Similarity=0.288  Sum_probs=27.3

Q ss_pred             HHHHHHHHHhccCCchhhHhcCCcccceecch---hhHHHHHHHH
Q 013845          295 TISAVMSLLKDIPDEDGDKQFGFQSISSKLGK---ENVLRLCVYA  336 (435)
Q Consensus       295 ~~~~~~~~i~di~D~egD~~~Gi~Tlpv~lG~---k~a~~l~~~l  336 (435)
                      +.+.+-.++||+.|+|-|+.. ++.=|+--|+   +.++.....+
T Consensus        57 ~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~L  100 (299)
T PRK13592         57 GFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSFI  100 (299)
T ss_pred             HHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHHH
Confidence            335566889999999999654 6666776565   4454444333

>PLN02922 prenyltransferase

Probab=83.33  E-value=5.1  Score=40.57  Aligned_cols=47  Identities=9%  Similarity=0.017  Sum_probs=30.3

Q ss_pred             HHHHHHHHHHHhhhhhcccccccccCCC-CCcccccccCHHHHHHHHHHHH
Q 013845          157 LLSAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLS  206 (435)
Q Consensus       157 ll~~~l~~~a~~~iNd~~D~e~D~~nkp-~RPl~sG~Is~~~A~~~~i~l~  206 (435)
                      .+...+........||+-|+|.||.+++ .-|.   ++.++.+..+...+.
T Consensus       194 slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~  241 (315)
T PLN02922        194 SVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLV---RLGTEKGSRVVRWAV  241 (315)
T ss_pred             HHHHHHHHHHHHHHccCcchhhHHHcCccceee---EEChHHHHHHHHHHH
Confidence            3344455667788999999999998764 4443   445566655444333

>PLN00012 chlorophyll synthetase; Provisional

Probab=82.75  E-value=12  Score=38.84  Aligned_cols=33  Identities=24%  Similarity=0.256  Sum_probs=25.1

Q ss_pred             HHHHHHHHhhhhhcccccccccC-CCCCcccccc
Q 013845          160 AVLMNNYVGTVNQVADVEIDKVN-KPDLPLASGD  192 (435)
Q Consensus       160 ~~l~~~a~~~iNd~~D~e~D~~n-kp~RPl~sG~  192 (435)
                      ..+...+....||+-|+|.|+.. ++.-|+.-|+
T Consensus       261 ~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~  294 (375)
T PLN00012        261 YSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGV  294 (375)
T ss_pred             HHHHHHHHHHHhhhcchhhHHHcCCcccceeech
Confidence            34566677889999999999965 5777776664

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=81.16  E-value=15  Score=36.68  Aligned_cols=48  Identities=13%  Similarity=-0.004  Sum_probs=31.3

Q ss_pred             HHHHHHHHHHhhhhhcccccccccCCC-CCcccccccCHHHHHHHHHHHHHH
Q 013845          158 LSAVLMNNYVGTVNQVADVEIDKVNKP-DLPLASGDLSMGTGLAITLTLSLT  208 (435)
Q Consensus       158 l~~~l~~~a~~~iNd~~D~e~D~~nkp-~RPl~sG~Is~~~A~~~~i~l~~l  208 (435)
                      +...+...+....||+-|+|.|+.+.+ .-|.   ++.++.+..+...+..+
T Consensus       168 l~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v---~lG~~~a~~l~~~l~~~  216 (285)
T TIGR02235       168 ILVGLATTLILFCSHFHQVEDDLAHGKRSPVV---RLGTKLAAKIVPWVISL  216 (285)
T ss_pred             HHHHHHHHHHHHhcCCccchhHHHcCCcceeh---eecHHhHHHHHHHHHHH
Confidence            344466777888999999999998753 4443   45566665554444433

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00