Citrus Sinensis ID: 013865
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 435 | 2.2.26 [Sep-21-2011] | |||||||
| P04802 | 557 | Aspartate--tRNA ligase, c | yes | no | 0.924 | 0.721 | 0.462 | 9e-90 | |
| Q75JQ1 | 576 | Aspartate--tRNA ligase, c | yes | no | 0.822 | 0.621 | 0.422 | 1e-83 | |
| Q922B2 | 501 | Aspartate--tRNA ligase, c | yes | no | 0.747 | 0.648 | 0.488 | 2e-81 | |
| O74407 | 580 | Aspartate--tRNA ligase, c | yes | no | 0.834 | 0.625 | 0.431 | 2e-80 | |
| P15178 | 501 | Aspartate--tRNA ligase, c | yes | no | 0.747 | 0.648 | 0.479 | 3e-80 | |
| Q03577 | 531 | Aspartate--tRNA ligase, c | yes | no | 0.905 | 0.741 | 0.427 | 6e-80 | |
| Q3SYZ4 | 501 | Aspartate--tRNA ligase, c | yes | no | 0.740 | 0.642 | 0.486 | 3e-79 | |
| P14868 | 501 | Aspartate--tRNA ligase, c | yes | no | 0.747 | 0.648 | 0.491 | 5e-79 | |
| Q5R9I5 | 501 | Aspartate--tRNA ligase, c | yes | no | 0.747 | 0.648 | 0.488 | 9e-79 | |
| Q559M9 | 569 | Aspartate--tRNA ligase, c | no | no | 0.786 | 0.601 | 0.362 | 2e-59 |
| >sp|P04802|SYDC_YEAST Aspartate--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DPS1 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 330 bits (847), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 197/426 (46%), Positives = 264/426 (61%), Gaps = 24/426 (5%)
Query: 19 QSISKKAAKK----EAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQS 74
+ +SKKA KK + ++ KEER + EA A + E+ +NYG +PL +QS
Sbjct: 27 KPLSKKALKKLQKEQEKQRKKEERALQLEAEREAREKKAAAEDTA-KDNYGKLPL--IQS 83
Query: 75 VNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVST 134
+ +TG+ + V D+EVL R RVH TR G LAF+ +R++ S
Sbjct: 84 RDSDRTGQ-------KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL 136
Query: 135 VQCLATV-KPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYC 192
+Q L K ++SK MV++ SL+ ESIV V G+V D IK AT Q +E+ I K+Y
Sbjct: 137 IQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYT 196
Query: 193 VSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251
+S + PI +EDASRSEAE E A LP VN DTRL+ RVID+RT+ NQ IFRIQ
Sbjct: 197 ISETPEALPILLEDASRSEAEAEAAG-----LPVVNLDTRLDYRVIDLRTVTNQAIFRIQ 251
Query: 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSIC 311
+ V +FR++L ++ F E+HTPKL+ SEGGS+VF + Y A LAQSPQ +KQ I
Sbjct: 252 AGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIV 311
Query: 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNN 371
DF RV+E GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D + LFV IF L
Sbjct: 312 ADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPK 371
Query: 372 VCKKELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLG 429
E+E V KQYP E K K +RLT++EG++ML+ AG EI DL+TE+E+ LG
Sbjct: 372 RFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLG 431
Query: 430 QLVLEK 435
+LV +K
Sbjct: 432 KLVRDK 437
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Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2 |
| >sp|Q75JQ1|SYDC1_DICDI Aspartate--tRNA ligase, cytoplasmic 1 OS=Dictyostelium discoideum GN=aspS1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 310 bits (794), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 172/407 (42%), Positives = 239/407 (58%), Gaps = 49/407 (12%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGN 121
+N+G++P+ + S+ REWT V L SL + VLIR R+ T+R G
Sbjct: 68 SNWGELPMNQ------------SKEKITREWTDVSQLTESLVGKSVLIRARLSTSRLQGA 115
Query: 122 KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQ 181
L FV +R+ + TVQ + K S SK MV+FV + ESIVDV V V I+ TQ
Sbjct: 116 NLCFVQLRDGLYTVQAVV-AKGGSNSKSMVQFVGQVPKESIVDVQATVVSTSVPIESCTQ 174
Query: 182 Q-VEVQIKKLYCVSRAAKTPITIEDASRSE---------------------------AEI 213
+ VE+Q+ + VS++ P+ IED SR++ ++
Sbjct: 175 KSVELQVSSFFIVSKSTLLPLQIEDLSRAQPLLDKQEDDLKQLEQLLQNTNLNEQEKTDL 234
Query: 214 EKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP 273
EK E ++ V+Q+ RL+NR +D+R A+Q IFR+QS V +FR+ LL E F+EIH+P
Sbjct: 235 EKKKSECIKFVNVSQEKRLDNRALDLRVPAHQSIFRLQSGVCTLFREQLLGEGFIEIHSP 294
Query: 274 KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333
K+I+ +SE G++VF+L+Y A LAQSPQL+KQM+IC DF +VFE GPVFRAE+S THR
Sbjct: 295 KIISAASESGASVFKLNYFNTHAYLAQSPQLYKQMAICADFNKVFEIGPVFRAENSNTHR 354
Query: 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP 393
HL EF GLD+EM K HY E +D +DRL +IF GL KE+E+V QYPFEP K+
Sbjct: 355 HLTEFVGLDLEMTFKDHYHEALDTLDRLMTSIFRGLETRFAKEIESVNTQYPFEPFKFTY 414
Query: 394 KTLRLTFEEGVQMLKDAGVEIDP-----LGDLNTESERKLGQLVLEK 435
+ R TF+E ML + DP D NT E++LG+++ EK
Sbjct: 415 PSPRFTFDEAAAMLAELN---DPDYIVKDNDFNTRQEKRLGKIIKEK 458
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Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q922B2|SYDC_MOUSE Aspartate--tRNA ligase, cytoplasmic OS=Mus musculus GN=Dars PE=2 SV=2 | Back alignment and function description |
|---|
Score = 303 bits (775), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 163/334 (48%), Positives = 226/334 (67%), Gaps = 9/334 (2%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
D V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ ESI+
Sbjct: 57 DDVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESII 114
Query: 164 DVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGV 221
DV GVV + +I TQQ VE+ ++K+Y +S A + P+ ++DA R E E E+ + V
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAIRPEVEGEEDGRATV 174
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
NQDTRL+NRVID+RT +Q IFR+QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 175 -----NQDTRLDNRVIDLRTSTSQAIFRLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EV++ + V IF GL + E++ V+KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVVEEIADTLVQIFKGLQERFQTEIQTVSKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
E + ML++AGVE+D DL+T +E+ LG+LV EK
Sbjct: 350 EALAMLREAGVEMDDEEDLSTPNEKLLGRLVKEK 383
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Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Mus musculus (taxid: 10090) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|O74407|SYDC_SCHPO Aspartate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 300 bits (767), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 173/401 (43%), Positives = 234/401 (58%), Gaps = 38/401 (9%)
Query: 61 ANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVG 120
A YGD+PL S A GR +T + ++ Q VL+R RV+T+R G
Sbjct: 73 AGKYGDLPLNR------------STARPGRTYTQISDISAKNDGQTVLLRARVYTSRLQG 120
Query: 121 NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT 180
NK+ F +R++ T+Q LA V D++SK+MV++ S+S ESIV V G+V IK AT
Sbjct: 121 NKMCFFSLRQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIKSAT 180
Query: 181 -QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEI----EKASKEGVQLPRVNQDTRLNN 234
Q E+ I +Y +S K P +EDA RSE +I E A++ + RVN DTRL+N
Sbjct: 181 VQDAEIHISSIYVISPIKKNLPFLVEDAGRSEEQIRESEENAAEGDSKFVRVNLDTRLDN 240
Query: 235 RVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 294
RV+D+RT NQ IF IQ+ + FR+FLLS +F EIHTPK+ SSEGGS VF++ Y
Sbjct: 241 RVLDLRTPTNQAIFDIQAGICQAFREFLLSNSFNEIHTPKMSGASSEGGSNVFKIQYFKT 300
Query: 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEV 354
L+QSPQL+KQM I D RVFE GPVFRAEDS T+RH+ EFTGLD+EM +HY EV
Sbjct: 301 DGFLSQSPQLYKQMLIAADRERVFEIGPVFRAEDSNTYRHMTEFTGLDLEMAFNEHYHEV 360
Query: 355 MDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY-KPKTLRLTFEEGVQMLKDAGVE 413
M+ +++LF+ IF + K++ V +QYP E +R F++ V++LK+AG
Sbjct: 361 MEFIEKLFLYIFKTIREKYAKQVAVVRQQYPSEDFILPDADRIRFHFKDAVKLLKEAGYR 420
Query: 414 I------------------DP-LGDLNTESERKLGQLVLEK 435
DP D +T ER LGQ+V EK
Sbjct: 421 KQLVPGQKVPEDEEFHYCEDPEFDDFSTPEERALGQIVREK 461
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Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|P15178|SYDC_RAT Aspartate--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Dars PE=2 SV=1 | Back alignment and function description |
|---|
Score = 299 bits (766), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 160/334 (47%), Positives = 225/334 (67%), Gaps = 9/334 (2%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
D+ V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ ESI+
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESII 114
Query: 164 DVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGV 221
DV G+V + +I TQQ VE+ ++K+Y +S A + P+ ++DA R E E E+ + V
Sbjct: 115 DVEGIVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAIRPEVEGEEDGRATV 174
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
NQDTRL+NR+ID+RT +Q IF +QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 175 -----NQDTRLDNRIIDLRTSTSQAIFHLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKSNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EV++ + V IF GL + E++ V KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVVEEIADTLVQIFKGLQERFQTEIQTVNKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
E + ML++AGVE+D DL+T +E+ LG+LV EK
Sbjct: 350 EALAMLREAGVEMDDEEDLSTPNEKLLGRLVKEK 383
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Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Rattus norvegicus (taxid: 10116) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q03577|SYDC_CAEEL Aspartate--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=drs-1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 298 bits (762), Expect = 6e-80, Method: Compositional matrix adjust.
Identities = 181/423 (42%), Positives = 253/423 (59%), Gaps = 29/423 (6%)
Query: 21 ISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQT 80
+SKK K A K K+E K E + A ++++E + YG L
Sbjct: 12 LSKKELNKLARKAKKDE--KAGEKGGNQQQAAAMDQEDASKDFYGSYGL----------- 58
Query: 81 GKWSEAVNGREWTVVGAL-----NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTV 135
VN +E V+ L N S ++V +RGR+HTTR G K F+V+R+ V TV
Sbjct: 59 ------VNSKEKKVLNFLKVKEINVSNATKDVWVRGRIHTTRSKG-KNCFLVLRQGVYTV 111
Query: 136 QCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVS 194
Q +A + +SK+M++FV S+S ESIVDV ++ D I+ TQ+ VE+ ++++ VS
Sbjct: 112 Q-VAMFMNEKISKQMLKFVSSISKESIVDVYATINKVDNPIESCTQKDVELLAQQVFVVS 170
Query: 195 RAA-KTPITIEDASR-SEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 252
+A K P+ IEDASR + + EKAS++ QL VN DTRL+NRVID+RT + IFRIQ+
Sbjct: 171 TSAPKLPLQIEDASRRAPTDEEKASEQENQLAVVNLDTRLDNRVIDLRTPTSHAIFRIQA 230
Query: 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICG 312
+ N FR L FVEI PK+I+ SEGG+ VF + Y SA LAQSPQL+KQM+I G
Sbjct: 231 GICNQFRNILDVRGFVEIMAPKIISAPSEGGANVFEVSYFKGSAYLAQSPQLYKQMAIAG 290
Query: 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV 372
DF +V+ GPVFRAEDS THRH+ EF GLD+EM HY EVM+ + + +F GL
Sbjct: 291 DFEKVYTIGPVFRAEDSNTHRHMTEFVGLDLEMAFNFHYHEVMETIAEVLTQMFKGLQQN 350
Query: 373 CKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLV 432
+ E+ AV QYP EP ++ L L + + + +L++ G+EI DL+T E+ LG+LV
Sbjct: 351 YQDEIAAVGNQYPAEPFQFCEPPLILKYPDAITLLRENGIEIGDEDDLSTPVEKFLGKLV 410
Query: 433 LEK 435
EK
Sbjct: 411 KEK 413
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Caenorhabditis elegans (taxid: 6239) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q3SYZ4|SYDC_BOVIN Aspartate--tRNA ligase, cytoplasmic OS=Bos taurus GN=DARS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 296 bits (757), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 161/331 (48%), Positives = 221/331 (66%), Gaps = 9/331 (2%)
Query: 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166
V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ ESIVDV
Sbjct: 60 VWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIVDVE 117
Query: 167 GVVSVPDVEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLP 224
GVV + +I TQQ VE+ ++K+Y +S A + P+ ++DA R E E E+ + V
Sbjct: 118 GVVRKVNQKIGSCTQQDVELHVQKIYVISSAEPRLPLQLDDAVRPEVEGEEEGRATV--- 174
Query: 225 RVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS 284
NQDTRL+NRVID+RT +Q IFR+QS + + FR+ L ++ FVEI TPK+I+ +SEGG+
Sbjct: 175 --NQDTRLDNRVIDLRTSTSQAIFRLQSGICHPFRETLTNKGFVEIQTPKIISAASEGGA 232
Query: 285 AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GLD+E
Sbjct: 233 NVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGLDIE 292
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404
M HY EV++ + V IF GL + E++ V KQ+P EP K+ TLRL + E +
Sbjct: 293 MAFNYHYHEVVEEIADTLVQIFKGLQKRFQTEIQTVNKQFPCEPFKFLEPTLRLEYCEAL 352
Query: 405 QMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
ML++AG+E+ DL+T +E+ LG+LV EK
Sbjct: 353 AMLREAGIEMGDEEDLSTPNEKLLGRLVKEK 383
|
Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Bos taurus (taxid: 9913) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|P14868|SYDC_HUMAN Aspartate--tRNA ligase, cytoplasmic OS=Homo sapiens GN=DARS PE=1 SV=2 | Back alignment and function description |
|---|
Score = 295 bits (755), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 164/334 (49%), Positives = 225/334 (67%), Gaps = 9/334 (2%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
D+ V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ ESIV
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIV 114
Query: 164 DVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGV 221
DV GVV + +I TQQ VE+ ++K+Y +S A + P+ ++DA R EAE E+ + V
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEAEGEEEGRATV 174
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
NQDTRL+NRVID+RT +Q +FR+QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 175 -----NQDTRLDNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFSIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EVM+ + V IF GL + E++ V KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVMEEIADTMVQIFKGLQERFQTEIQTVNKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
E + ML++AGVE+ DL+T +E+ LG LV EK
Sbjct: 350 EALAMLREAGVEMGDEDDLSTPNEKLLGHLVKEK 383
|
Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Homo sapiens (taxid: 9606) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q5R9I5|SYDC_PONAB Aspartate--tRNA ligase, cytoplasmic OS=Pongo abelii GN=DARS PE=2 SV=1 | Back alignment and function description |
|---|
Score = 294 bits (752), Expect = 9e-79, Method: Compositional matrix adjust.
Identities = 163/334 (48%), Positives = 226/334 (67%), Gaps = 9/334 (2%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
D+ V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ ESIV
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIV 114
Query: 164 DVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGV 221
DV GVV + +I+ TQQ VE+ ++K+Y +S A + P+ ++DA R EAE E+ + V
Sbjct: 115 DVEGVVRKVNQKIESCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEAEGEEEGRATV 174
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
NQDTRL+NRVID+RT +Q +FR+QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 175 -----NQDTRLDNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EVM+ + V IF GL + E++ V KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVMEEIADTMVQIFKGLQERFQTEIQTVNKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
E + ML++AGVE+ DL+T +E+ LG L+ EK
Sbjct: 350 EALAMLREAGVEMGDEDDLSTPNEKLLGHLIKEK 383
|
Catalyzes the specific attachment of an amino acid to its cognate tRNA in a 2 step reaction: the amino acid (AA) is first activated by ATP to form AA-AMP and then transferred to the acceptor end of the tRNA. Pongo abelii (taxid: 9601) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
| >sp|Q559M9|SYDC2_DICDI Aspartate--tRNA ligase, cytoplasmic 2 OS=Dictyostelium discoideum GN=aspS2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 229 bits (585), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 129/356 (36%), Positives = 204/356 (57%), Gaps = 14/356 (3%)
Query: 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE 149
+EW+ + LN S + VLIR RV R GN L F+ +R+ +S++Q + + ++ SK
Sbjct: 80 KEWSNISDLNESCVGKYVLIRARVSNIRSFGNSLCFLQLRDGLSSIQAVISKNDENNSKS 139
Query: 150 MVRFVRS-LSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSRA-AKTPITIEDA 206
M+ F+ S ++ ESI+D+ +++ I+ + +E++I L+ S++ + P+ +D
Sbjct: 140 MIHFINSTITKESIIDIEAILTNSSTPIESCIIKNLELKIYSLFLQSKSNSSLPLQFDDL 199
Query: 207 SRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSEN 266
S+ + G + ++RLNNR +D+RT N IF+IQS + N+FR LL +
Sbjct: 200 SKPTT-YQNYDDNGYTYV-IPLNSRLNNRCLDLRTFYNLSIFKIQSAISNLFRDQLLIND 257
Query: 267 FVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326
F+EIH+PK+I S S F+L+Y + A L++S Q ++Q++I DF RVFE GPV+R
Sbjct: 258 FIEIHSPKIIKQSINENS--FKLNYFNEIAYLSESTQFYRQLAIVSDFKRVFEIGPVYRT 315
Query: 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAK-QYP 385
+ +THRHL EFT LD EM K HY EV+D +D L ++IF L + EL+ + Q
Sbjct: 316 DLGHTHRHLNEFTSLDFEMTFKDHYHEVLDFLDNLMISIFKILETNYENELKIINNYQLQ 375
Query: 386 FEPLKYKPKTLRLTFEEGVQML------KDAGVEIDPLGDLNTESERKLGQLVLEK 435
FE K+ KT R TF E ML ++ ++ LN + ER G++V EK
Sbjct: 376 FEKFKFSTKTPRFTFSEVKLMLIEFSENENNKFCMELFDYLNVQEERIFGKIVKEK 431
|
Dictyostelium discoideum (taxid: 44689) EC: 6 EC: . EC: 1 EC: . EC: 1 EC: . EC: 1 EC: 2 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 435 | ||||||
| 357437181 | 541 | Aspartyl-tRNA synthetase [Medicago trunc | 0.898 | 0.722 | 0.718 | 1e-166 | |
| 224087415 | 530 | predicted protein [Populus trichocarpa] | 0.944 | 0.775 | 0.704 | 1e-166 | |
| 356552406 | 543 | PREDICTED: aspartyl-tRNA synthetase, cyt | 0.944 | 0.756 | 0.714 | 1e-165 | |
| 356564011 | 544 | PREDICTED: aspartyl-tRNA synthetase, cyt | 0.894 | 0.715 | 0.726 | 1e-164 | |
| 449437092 | 545 | PREDICTED: aspartate--tRNA ligase, cytop | 0.891 | 0.711 | 0.719 | 1e-164 | |
| 449505487 | 545 | PREDICTED: aspartate--tRNA ligase, cytop | 0.891 | 0.711 | 0.719 | 1e-164 | |
| 255564914 | 540 | aspartyl-tRNA synthetase, putative [Rici | 0.947 | 0.762 | 0.722 | 1e-159 | |
| 225429870 | 544 | PREDICTED: aspartyl-tRNA synthetase, cyt | 0.972 | 0.777 | 0.678 | 1e-157 | |
| 30688944 | 558 | aspartyl-tRNA synthetase [Arabidopsis th | 1.0 | 0.779 | 0.643 | 1e-154 | |
| 297802914 | 557 | hypothetical protein ARALYDRAFT_491623 [ | 0.967 | 0.755 | 0.652 | 1e-152 |
| >gi|357437181|ref|XP_003588866.1| Aspartyl-tRNA synthetase [Medicago truncatula] gi|355477914|gb|AES59117.1| Aspartyl-tRNA synthetase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 590 bits (1521), Expect = e-166, Method: Compositional matrix adjust.
Identities = 289/402 (71%), Positives = 332/402 (82%), Gaps = 11/402 (2%)
Query: 35 KEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTV 94
+++RR+E AA SA S LS+E++ PLA NYG VPL ELQS N +WT
Sbjct: 32 EKQRRREVAAATSATSTLSVEDD-PLAVNYGIVPLIELQS---------KTPANVNDWTR 81
Query: 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV 154
V ALN SL++++VLIRGR RPVG K+AF+V+RE TVQCL +PD VS +MV+F
Sbjct: 82 VEALNDSLENKQVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQAQPDLVSPQMVKFA 141
Query: 155 RSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEI 213
+LS ESIVDV GVVS+P IKGATQQ+E+Q++KLYCVS+A T PI IEDA+RSE EI
Sbjct: 142 AALSRESIVDVEGVVSIPAAPIKGATQQIEIQVRKLYCVSKAIPTLPINIEDAARSEVEI 201
Query: 214 EKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP 273
EKA + G QL RVNQDTRLN RV+D+RT ANQGIFRIQSQVGN+FRQFLL+E+FVEIHTP
Sbjct: 202 EKAIQAGEQLVRVNQDTRLNFRVLDLRTPANQGIFRIQSQVGNVFRQFLLAESFVEIHTP 261
Query: 274 KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333
KLIAGSSEGG+AVFRLDYKGQ ACLAQSPQLHKQMSICGDFGRVFE GPVFRAEDS+THR
Sbjct: 262 KLIAGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAEDSFTHR 321
Query: 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP 393
HLCEFTGLDVEMEIKKHY EVMD+VD+LFV +FD LN CKK+LEAVA QYPFEPLKY P
Sbjct: 322 HLCEFTGLDVEMEIKKHYFEVMDVVDKLFVAMFDTLNTKCKKDLEAVANQYPFEPLKYLP 381
Query: 394 KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
TLRLT+EEG+QMLK+ GVEI+P GDLNTE+ERKLGQLVLEK
Sbjct: 382 NTLRLTYEEGIQMLKEVGVEIEPFGDLNTEAERKLGQLVLEK 423
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224087415|ref|XP_002308157.1| predicted protein [Populus trichocarpa] gi|222854133|gb|EEE91680.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 589 bits (1519), Expect = e-166, Method: Compositional matrix adjust.
Identities = 298/423 (70%), Positives = 339/423 (80%), Gaps = 12/423 (2%)
Query: 14 VDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQ 73
++ +Q K +K+ +K++ RK AA AAS+LSIEE+ PLA NYG++PLQ+LQ
Sbjct: 1 MNPQNQRAKKLQRRKQQSKRSYVAVRKPLWPAA-AASSLSIEED-PLAANYGNIPLQDLQ 58
Query: 74 SVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVS 133
S + + + WT VG L LK++EVLIRGR TTR VG +AFVVVRE+
Sbjct: 59 SKVE---------ADLKAWTQVGDLTHELKEKEVLIRGRAQTTRAVGKNMAFVVVREKGF 109
Query: 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193
TVQC+ T +PD VSK+MV+F LS ESIVD+ GVVSVP + IKG TQQVE+Q+ KLYCV
Sbjct: 110 TVQCVVTARPDVVSKQMVKFAAGLSRESIVDIHGVVSVPSIAIKGTTQQVEIQVSKLYCV 169
Query: 194 SRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 252
+A T PI IEDASRSE EIE+A + G QL RVNQDTRLN RV+D RT ANQGIFRIQ
Sbjct: 170 DKAMPTLPINIEDASRSEKEIEEALEAGEQLVRVNQDTRLNYRVLDFRTSANQGIFRIQC 229
Query: 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICG 312
QV NIFRQFLLSE+FVEIHTPKLIAGSSEGGSAVF+LDYKGQ+ACLAQSPQLHKQM+ICG
Sbjct: 230 QVCNIFRQFLLSEDFVEIHTPKLIAGSSEGGSAVFKLDYKGQAACLAQSPQLHKQMAICG 289
Query: 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV 372
DFGRVFE GPVFRAEDSYTHRHLCEFTGLDVEMEIK+HY+EVMDIVD LFVT+FD LN
Sbjct: 290 DFGRVFEIGPVFRAEDSYTHRHLCEFTGLDVEMEIKQHYTEVMDIVDHLFVTMFDHLNKK 349
Query: 373 CKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLV 432
C K LEAV +QYPFEPLKY PKTLRL FEEGVQMLK+AGVEIDP GDLNTESERKLGQLV
Sbjct: 350 CSKYLEAVGRQYPFEPLKYLPKTLRLRFEEGVQMLKEAGVEIDPYGDLNTESERKLGQLV 409
Query: 433 LEK 435
LEK
Sbjct: 410 LEK 412
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356552406|ref|XP_003544559.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 301/421 (71%), Positives = 336/421 (79%), Gaps = 10/421 (2%)
Query: 16 SSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSV 75
SS +SKKAAKKEAAK K RR+E A++A + LS++EE PL NYGDVPL ELQS
Sbjct: 14 SSEAQVSKKAAKKEAAKLEKLRRRQEIATASAATANLSVDEEDPLGGNYGDVPLVELQSK 73
Query: 76 NDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTV 135
G EWT V AL G+L+++ VLIRGR RPVG K+AF+V+RE TV
Sbjct: 74 TSADVG---------EWTRVEALGGALENRSVLIRGRAQAIRPVGKKMAFLVIRENGFTV 124
Query: 136 QCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195
QCL + D+VS +MV+F +LS ESIVDV GVVS+P IKGATQQVE+Q++KLYCVSR
Sbjct: 125 QCLVQAQADTVSPQMVKFAAALSRESIVDVEGVVSIPSAPIKGATQQVEIQVRKLYCVSR 184
Query: 196 AAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 254
A T PI +EDA+RSE EIE A + G QL RVNQDTRLN RV+D+RT ANQGIFRIQSQV
Sbjct: 185 AVPTLPINLEDAARSEVEIETALQAGEQLVRVNQDTRLNFRVLDVRTPANQGIFRIQSQV 244
Query: 255 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDF 314
GN FRQFLLSE F EIHTPKLIAGSSEGG+AVFRLDYKGQ ACLAQSPQLHKQMSICGDF
Sbjct: 245 GNAFRQFLLSEGFCEIHTPKLIAGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDF 304
Query: 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCK 374
GRVFE GPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY EVMDIVDRLFV +FD LN CK
Sbjct: 305 GRVFEIGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYFEVMDIVDRLFVAMFDSLNQNCK 364
Query: 375 KELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLE 434
K+LEAV QYPFEPLKY TLRLT+EEG+QMLKD GVEI+P GDLNTE+ERKLGQLV E
Sbjct: 365 KDLEAVGSQYPFEPLKYLRTTLRLTYEEGIQMLKDVGVEIEPYGDLNTEAERKLGQLVSE 424
Query: 435 K 435
K
Sbjct: 425 K 425
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356564011|ref|XP_003550250.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 584 bits (1505), Expect = e-164, Method: Compositional matrix adjust.
Identities = 290/399 (72%), Positives = 325/399 (81%), Gaps = 10/399 (2%)
Query: 38 RRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGA 97
RR+E AA++A + LS++EE PL NYGDVPL ELQS G EWT V A
Sbjct: 37 RRQEIAAASAATANLSVDEEDPLGGNYGDVPLVELQSKTPSDVG---------EWTRVEA 87
Query: 98 LNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSL 157
L G+L++ VLIRGR RPVG K+AF+V+RE TVQCL +PD+VS +MV+F +L
Sbjct: 88 LGGALENNSVLIRGRAQAIRPVGKKMAFLVIRENGFTVQCLVQAQPDTVSAQMVKFAAAL 147
Query: 158 SNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKA 216
S ESIVDV GVVSVP IKGATQQVE+Q++KLYCVSRA T PI +EDA+RSE EIEKA
Sbjct: 148 SRESIVDVEGVVSVPTAPIKGATQQVEIQVRKLYCVSRAVPTLPINLEDAARSEVEIEKA 207
Query: 217 SKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLI 276
+ G QL RVNQDTRLN RV+D+RT ANQGIFRIQSQVGN FRQFL+S+ F EIHTPKLI
Sbjct: 208 LQAGEQLVRVNQDTRLNFRVLDVRTPANQGIFRIQSQVGNAFRQFLVSQGFCEIHTPKLI 267
Query: 277 AGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLC 336
AGSSEGG+AVFRLDYKGQ ACLAQSPQLHKQMSICGDFGRVFE GPVFRAEDSYTHRHLC
Sbjct: 268 AGSSEGGAAVFRLDYKGQPACLAQSPQLHKQMSICGDFGRVFEIGPVFRAEDSYTHRHLC 327
Query: 337 EFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTL 396
EFTGLDVEMEIKKHY EVMD+VDRLFV +FD LN CKK+LEAV QYPFEPLKY KTL
Sbjct: 328 EFTGLDVEMEIKKHYFEVMDLVDRLFVAMFDSLNQNCKKDLEAVGSQYPFEPLKYLRKTL 387
Query: 397 RLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
RLT+EEG+QMLKD GVEI+P GDLNTE+ERKLGQLVLEK
Sbjct: 388 RLTYEEGIQMLKDVGVEIEPYGDLNTEAERKLGQLVLEK 426
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449437092|ref|XP_004136326.1| PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1504), Expect = e-164, Method: Compositional matrix adjust.
Identities = 287/399 (71%), Positives = 332/399 (83%), Gaps = 11/399 (2%)
Query: 38 RRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGA 97
RR++ AA SA S+L++E++ PL+ NYGDVPL +LQS E + WT VG+
Sbjct: 39 RRRQEAAAESAISSLNVEDD-PLSANYGDVPLSDLQS---------KEVKSIENWTQVGS 88
Query: 98 LNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSL 157
L LKD+ V++RGRV T R VG K+AF+VVRE+ TVQC+ + +P+ VS++MV++V L
Sbjct: 89 LTPELKDKYVILRGRVQTIRAVGKKMAFLVVREKGFTVQCVLSEQPELVSRQMVKYVDGL 148
Query: 158 SNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKA 216
S ESIVDV GVVSVP+V IKGA+QQVE+Q++K+YC+S+A T PI IEDA+RSEAEI+KA
Sbjct: 149 SRESIVDVEGVVSVPNVAIKGASQQVEIQVRKVYCISKAMPTLPINIEDAARSEAEIDKA 208
Query: 217 SKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLI 276
+ G QL RVNQDTRLN RV+D+RT ANQGIFRIQ QV +FRQFLL ENFVEIHTPKLI
Sbjct: 209 LQAGEQLVRVNQDTRLNYRVLDMRTPANQGIFRIQCQVSTMFRQFLLDENFVEIHTPKLI 268
Query: 277 AGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLC 336
GSSEGG++VFRLDYKGQ ACLAQSPQLHKQM+ICGDFGRVFE GPVFRAEDSYTHRHLC
Sbjct: 269 GGSSEGGASVFRLDYKGQPACLAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSYTHRHLC 328
Query: 337 EFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTL 396
EFTGLDVEMEIK HYSEVMDIVDRLFV +FD LN CKK LEAV KQYPFEPLKY KTL
Sbjct: 329 EFTGLDVEMEIKTHYSEVMDIVDRLFVAMFDSLNEKCKKALEAVDKQYPFEPLKYLRKTL 388
Query: 397 RLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
RLTFEEG+QMLKDAGVEIDPLGDLNTE+ERKLGQLVLEK
Sbjct: 389 RLTFEEGIQMLKDAGVEIDPLGDLNTEAERKLGQLVLEK 427
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449505487|ref|XP_004162485.1| PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 583 bits (1503), Expect = e-164, Method: Compositional matrix adjust.
Identities = 287/399 (71%), Positives = 332/399 (83%), Gaps = 11/399 (2%)
Query: 38 RRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGA 97
RR++ AA SA S+L++E++ PL+ NYGDVPL +LQS E + WT VG+
Sbjct: 39 RRRQEAAAESAISSLNVEDD-PLSANYGDVPLSDLQS---------KEVKSIENWTQVGS 88
Query: 98 LNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSL 157
L LKD+ V++RGRV T R VG K+AF+VVRE+ TVQC+ + +P+ VS++MV++V L
Sbjct: 89 LTPELKDKYVILRGRVQTIRAVGKKMAFLVVREKGFTVQCVLSEQPELVSRQMVKYVDGL 148
Query: 158 SNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKA 216
S ESIVDV GVVSVP+V IKGA+QQVE+Q++K+YC+S+A T PI IEDA+RSEAEI+KA
Sbjct: 149 SRESIVDVEGVVSVPNVAIKGASQQVEIQVRKVYCISKAMPTLPINIEDAARSEAEIDKA 208
Query: 217 SKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLI 276
+ G QL RVNQDTRLN RV+D+RT ANQGIFRIQ QV +FRQFLL ENFVEIHTPKLI
Sbjct: 209 LQAGEQLVRVNQDTRLNYRVLDMRTPANQGIFRIQCQVSTMFRQFLLDENFVEIHTPKLI 268
Query: 277 AGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLC 336
GSSEGG++VFRLDYKGQ ACLAQSPQLHKQM+ICGDFGRVFE GPVFRAEDSYTHRHLC
Sbjct: 269 GGSSEGGASVFRLDYKGQPACLAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSYTHRHLC 328
Query: 337 EFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTL 396
EFTGLDVEMEIK HYSEVMDIVDRLFV +FD LN CKK LEAV KQYPFEPLKY KTL
Sbjct: 329 EFTGLDVEMEIKTHYSEVMDIVDRLFVAMFDSLNEKCKKALEAVDKQYPFEPLKYLRKTL 388
Query: 397 RLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
RLTFEEG+QMLKDAGVEIDPLGDLNTE+ERKLGQLVLEK
Sbjct: 389 RLTFEEGIQMLKDAGVEIDPLGDLNTEAERKLGQLVLEK 427
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255564914|ref|XP_002523450.1| aspartyl-tRNA synthetase, putative [Ricinus communis] gi|223537278|gb|EEF38909.1| aspartyl-tRNA synthetase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1462), Expect = e-159, Method: Compositional matrix adjust.
Identities = 307/425 (72%), Positives = 351/425 (82%), Gaps = 13/425 (3%)
Query: 15 DSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASA--LSIEE-EGPLANNYGDVPLQE 71
+SS+Q+ SKKAAKKEAAK+ K RR+EA AAA+AA+A LS+E+ E PL+ NYG+ PL +
Sbjct: 7 ESSAQTTSKKAAKKEAAKQEKLRRREEAAAAAAAAAAAALSMEDQEDPLSGNYGNTPLSD 66
Query: 72 LQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRER 131
LQS E + EWT VG LN LKD+E+LIRGR TTR VG +AFVVVR++
Sbjct: 67 LQS---------KEESDLSEWTRVGQLNEELKDKELLIRGRAQTTRAVGKNMAFVVVRQK 117
Query: 132 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLY 191
TVQC+ TV+ D VS++MV+FV LS ESIVDV GVVSVP+ IKG TQQVEVQ++KLY
Sbjct: 118 GFTVQCVVTVQADLVSRQMVKFVAGLSRESIVDVRGVVSVPNSPIKGTTQQVEVQVRKLY 177
Query: 192 CVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250
C+S+A T PI IEDA+RSE EIE+A + G Q RVNQDTRLN RV+D+RT ANQGIFRI
Sbjct: 178 CISKAIPTLPINIEDAARSEKEIEEALQRGEQFVRVNQDTRLNYRVLDMRTPANQGIFRI 237
Query: 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSI 310
QS+VGNIFRQFLLSE+F EIHTPKLIAGSSEGGSAVF+LDYKGQ ACLAQSPQLHKQM+I
Sbjct: 238 QSEVGNIFRQFLLSEDFDEIHTPKLIAGSSEGGSAVFKLDYKGQPACLAQSPQLHKQMAI 297
Query: 311 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLN 370
CGD RVFE GPVFRAEDSYTHRHLCEF GLDVEMEIKKHYSEVMDIVDRLFV +FD LN
Sbjct: 298 CGDKERVFEVGPVFRAEDSYTHRHLCEFVGLDVEMEIKKHYSEVMDIVDRLFVKMFDYLN 357
Query: 371 NVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQ 430
CKKEL+AV +QYPFEPLKY KTLRL FEEG+QMLK+AGVE+DP GDLNTE+ERKLGQ
Sbjct: 358 EKCKKELDAVCRQYPFEPLKYLRKTLRLRFEEGIQMLKEAGVEVDPYGDLNTEAERKLGQ 417
Query: 431 LVLEK 435
LVLEK
Sbjct: 418 LVLEK 422
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225429870|ref|XP_002283440.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 560 bits (1442), Expect = e-157, Method: Compositional matrix adjust.
Identities = 297/438 (67%), Positives = 348/438 (79%), Gaps = 15/438 (3%)
Query: 1 MSTESEPPKVQEEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSI---EEE 57
MS+ES+ P + V+ +++ SKKAAKKEAAK K+ RR+EA ++A++AS I +
Sbjct: 1 MSSESQTPNLS--VEDEAKAQSKKAAKKEAAKLEKQRRRQEAASSAASASVAGISIGDTP 58
Query: 58 GPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTR 117
PLA+NYGDVPL +LQS + V G +WT +GAL LKDQ+VLIRGR T R
Sbjct: 59 DPLASNYGDVPLLDLQS----------KEVTGLKWTDIGALTEDLKDQKVLIRGRAQTIR 108
Query: 118 PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177
VG +AF+VVR+ TVQC+ TV PD VS+ MV++ LS ES VD+ G++SVP V IK
Sbjct: 109 AVGKNIAFLVVRQMGFTVQCVLTVAPDLVSRHMVKYATGLSRESHVDIEGIISVPGVPIK 168
Query: 178 GATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVI 237
GATQQVEVQ++KLY +S+A PI IEDA+RSE+EIEKA + G QL RVNQDTRLN RV+
Sbjct: 169 GATQQVEVQVRKLYGISKAENLPINIEDAARSESEIEKALQAGEQLVRVNQDTRLNYRVL 228
Query: 238 DIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSAC 297
D+RT ANQ IFR+Q QV NIFRQFLLSE FV IHTPKLI GSSEGGSAVFRLDYKGQ AC
Sbjct: 229 DLRTPANQAIFRVQCQVENIFRQFLLSEGFVGIHTPKLIGGSSEGGSAVFRLDYKGQPAC 288
Query: 298 LAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDI 357
LAQSPQLHKQM+ICGDFGRVFE GPVFRAEDS+THRHLCEFTGLDVEMEIK+HY EVMDI
Sbjct: 289 LAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSFTHRHLCEFTGLDVEMEIKEHYFEVMDI 348
Query: 358 VDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPL 417
VDRLFV +FD LN CKKELEA+ +QYPFEPLKY KTLRL F+EGVQMLK+ G+E+DP
Sbjct: 349 VDRLFVAMFDSLNENCKKELEAIERQYPFEPLKYLRKTLRLPFQEGVQMLKEVGMEVDPY 408
Query: 418 GDLNTESERKLGQLVLEK 435
GDLNTE+ERKLGQLVLEK
Sbjct: 409 GDLNTEAERKLGQLVLEK 426
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30688944|ref|NP_849558.1| aspartyl-tRNA synthetase [Arabidopsis thaliana] gi|30688949|ref|NP_194847.3| aspartyl-tRNA synthetase [Arabidopsis thaliana] gi|7270020|emb|CAB79836.1| aspartate--tRNA ligase-like protein [Arabidopsis thaliana] gi|222424631|dbj|BAH20270.1| AT4G31180 [Arabidopsis thaliana] gi|332660472|gb|AEE85872.1| aspartyl-tRNA synthetase [Arabidopsis thaliana] gi|332660473|gb|AEE85873.1| aspartyl-tRNA synthetase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 283/440 (64%), Positives = 341/440 (77%), Gaps = 5/440 (1%)
Query: 1 MSTESEPPKVQEEV---DSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEE 57
MS+ESE P + + S + SKKAAKKEAAK K RR+E E A +++S+EE
Sbjct: 1 MSSESEIPPLSSSTAAAEESGEKTSKKAAKKEAAKLEKLRRRQEQEEATRRTASISLEEN 60
Query: 58 GPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTR 117
+NNYGDV L ELQS DP+ GKW EAV G+EWT V L + + EVLIRGRVHT R
Sbjct: 61 DEFSNNYGDVTLTELQSSADPKAGKWIEAVEGKEWTDVSDLVEEMLESEVLIRGRVHTNR 120
Query: 118 PVGNKLAFVVVRERVSTVQCLATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176
P NKL FVV+RE STVQC+ + + V MV++++ LS ES VDVIGVV++P +
Sbjct: 121 PTSNKLGFVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLSRESFVDVIGVVTLPKEPL 180
Query: 177 KGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNR 235
G TQQVE+Q++K+YC++++ AK P+++EDA+RSEA+IE + + RVNQDTRLN R
Sbjct: 181 TGTTQQVEIQVRKVYCINKSLAKLPLSVEDAARSEADIEASLQTPSPAARVNQDTRLNYR 240
Query: 236 VIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQS 295
V+D+RT ANQ IF++Q +V FR+ L +NFV IHTPKL+AGSSEGGSAVFRL+YKGQ
Sbjct: 241 VLDLRTPANQAIFQLQYEVEYAFREKLRFKNFVGIHTPKLMAGSSEGGSAVFRLEYKGQP 300
Query: 296 ACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVM 355
ACLAQSPQLHKQM+ICGD RVFE GPVFRAEDS+THRHLCEF GLDVEMEI+KHYSE+M
Sbjct: 301 ACLAQSPQLHKQMAICGDLRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIRKHYSEIM 360
Query: 356 DIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEID 415
D+VD LFV IF LN CKKEL+AV KQYPFEPLK+ PKTLRLTFEEGVQMLK+AGVE+D
Sbjct: 361 DLVDELFVFIFTSLNERCKKELQAVGKQYPFEPLKFLPKTLRLTFEEGVQMLKEAGVEVD 420
Query: 416 PLGDLNTESERKLGQLVLEK 435
PLGDLNTESERKLGQLVLEK
Sbjct: 421 PLGDLNTESERKLGQLVLEK 440
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297802914|ref|XP_002869341.1| hypothetical protein ARALYDRAFT_491623 [Arabidopsis lyrata subsp. lyrata] gi|297315177|gb|EFH45600.1| hypothetical protein ARALYDRAFT_491623 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust.
Identities = 276/423 (65%), Positives = 333/423 (78%), Gaps = 2/423 (0%)
Query: 15 DSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQS 74
+ S + ISKKAAKKEAAK K RR+E + A +++S+EE ++NYGDV L ELQS
Sbjct: 17 EESGEKISKKAAKKEAAKLEKLRRRQEQDEATRKTASMSLEENEEYSSNYGDVTLNELQS 76
Query: 75 VNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVST 134
DP+ GKW EAV G++WT V L + + EVLIRGRVH RP +KL F+++RE ST
Sbjct: 77 TADPKAGKWREAVEGKDWTDVSDLVEEMVESEVLIRGRVHINRPTSSKLGFLILRESGST 136
Query: 135 VQCLATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193
VQC+ + V MV++ LS ES VDVIGVV +P + G TQQVE+Q++K+YC+
Sbjct: 137 VQCVVRQSEKTKVGANMVKYSEQLSRESFVDVIGVVVLPKEPLTGTTQQVEIQVRKVYCI 196
Query: 194 SRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 252
++A AK P+++EDA+RSEA+IEK+ + RVNQDTRLN+RV+D+RT ANQ IFR+Q
Sbjct: 197 NKALAKLPLSVEDAARSEADIEKSLQTEKPAARVNQDTRLNHRVLDLRTPANQAIFRLQC 256
Query: 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICG 312
QV N FR+ L+ ++FV IHTPKL+AGSSEGGSAVFRL+YKGQ ACLAQSPQLHKQM+ICG
Sbjct: 257 QVENSFREKLIFKDFVGIHTPKLMAGSSEGGSAVFRLEYKGQPACLAQSPQLHKQMAICG 316
Query: 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNV 372
D RVFE GPVFRAEDS+THRHLCEF GLDVEMEI+KHYSE+MD+VD LFV IF LN
Sbjct: 317 DLRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIRKHYSEIMDLVDELFVFIFTSLNEK 376
Query: 373 CKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLV 432
CKKELEAV KQYPFEPLK+ PKTLRLTFEEGVQMLK+AGVE+DPLGDLNTESERKLGQLV
Sbjct: 377 CKKELEAVRKQYPFEPLKFLPKTLRLTFEEGVQMLKEAGVEVDPLGDLNTESERKLGQLV 436
Query: 433 LEK 435
LEK
Sbjct: 437 LEK 439
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 435 | ||||||
| TAIR|locus:2126306 | 558 | AT4G31180 [Arabidopsis thalian | 0.862 | 0.672 | 0.655 | 5.2e-129 | |
| TAIR|locus:2116397 | 532 | AT4G26870 [Arabidopsis thalian | 0.829 | 0.678 | 0.614 | 4.5e-114 | |
| SGD|S000003941 | 557 | DPS1 "Aspartyl-tRNA synthetase | 0.825 | 0.644 | 0.468 | 3.1e-76 | |
| FB|FBgn0002069 | 531 | Aats-asp "Aspartyl-tRNA synthe | 0.781 | 0.640 | 0.456 | 2.2e-73 | |
| ZFIN|ZDB-GENE-061110-135 | 531 | dars "aspartyl-tRNA synthetase | 0.747 | 0.612 | 0.473 | 2.8e-73 | |
| CGD|CAL0001457 | 578 | DPS1-1 [Candida albicans (taxi | 0.829 | 0.624 | 0.438 | 5.9e-73 | |
| UNIPROTKB|P14868 | 501 | DARS "Aspartate--tRNA ligase, | 0.747 | 0.648 | 0.473 | 6.7e-72 | |
| POMBASE|SPCC1223.07c | 580 | drs1 "cytoplasmic aspartate-tR | 0.779 | 0.584 | 0.435 | 1.6e-71 | |
| MGI|MGI:2442544 | 501 | Dars "aspartyl-tRNA synthetase | 0.747 | 0.648 | 0.467 | 2.3e-71 | |
| UNIPROTKB|Q5ZJQ6 | 503 | DARS "Uncharacterized protein" | 0.747 | 0.646 | 0.461 | 6.1e-71 |
| TAIR|locus:2126306 AT4G31180 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1266 (450.7 bits), Expect = 5.2e-129, P = 5.2e-129
Identities = 247/377 (65%), Positives = 294/377 (77%)
Query: 61 ANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVG 120
+NNYGDV L ELQS DP+ GKW EAV G+EWT V L + + EVLIRGRVHT RP
Sbjct: 64 SNNYGDVTLTELQSSADPKAGKWIEAVEGKEWTDVSDLVEEMLESEVLIRGRVHTNRPTS 123
Query: 121 NKLAFVVVRERVSTVQCLATVKPDS-VSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGA 179
NKL FVV+RE STVQC+ + + V MV++++ LS E + G
Sbjct: 124 NKLGFVVLRESGSTVQCVVSQSEKTKVGANMVKYLKQLSRESFVDVIGVVTLPKEPLTGT 183
Query: 180 TQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 238
TQQVE+Q++K+YC++++ AK P+++EDA+RSEA+IE + + RVNQDTRLN RV+D
Sbjct: 184 TQQVEIQVRKVYCINKSLAKLPLSVEDAARSEADIEASLQTPSPAARVNQDTRLNYRVLD 243
Query: 239 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACL 298
+RT ANQ IF++Q +V FR+ L +NFV IHTPKL+AGSSEGGSAVFRL+YKGQ ACL
Sbjct: 244 LRTPANQAIFQLQYEVEYAFREKLRFKNFVGIHTPKLMAGSSEGGSAVFRLEYKGQPACL 303
Query: 299 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIV 358
AQSPQLHKQM+ICGD RVFE GPVFRAEDS+THRHLCEF GLDVEMEI+KHYSE+MD+V
Sbjct: 304 AQSPQLHKQMAICGDLRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIRKHYSEIMDLV 363
Query: 359 DRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLG 418
D LFV IF LN CKKEL+AV KQYPFEPLK+ PKTLRLTFEEGVQMLK+AGVE+DPLG
Sbjct: 364 DELFVFIFTSLNERCKKELQAVGKQYPFEPLKFLPKTLRLTFEEGVQMLKEAGVEVDPLG 423
Query: 419 DLNTESERKLGQLVLEK 435
DLNTESERKLGQLVLEK
Sbjct: 424 DLNTESERKLGQLVLEK 440
|
|
| TAIR|locus:2116397 AT4G26870 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 231/376 (61%), Positives = 275/376 (73%)
Query: 61 ANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVG 120
++NYGDV ELQS AV G+E T V L + EV IRGR+H R VG
Sbjct: 53 SSNYGDVTTNELQS-----------AVEGKELTDVSNLVEEIVGSEVSIRGRLHKNRLVG 101
Query: 121 NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGAT 180
KL FV++RE TVQC+ V+ V M++FV+ LS E + G T
Sbjct: 102 TKL-FVILRESGFTVQCV--VEETRVGANMIKFVKQLSRESVVELIGVVSHPKKPLTGTT 158
Query: 181 QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDI 239
QQVE+ ++K+YC+SR+ P+ +EDA+RSE++IEK+ K+G Q RV QDTRLNNRV+DI
Sbjct: 159 QQVEIHVRKMYCLSRSLPNLPLVVEDAARSESDIEKSGKDGKQAARVLQDTRLNNRVLDI 218
Query: 240 RTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLA 299
RT ANQ IFRIQ QV FR++L S+ F+EIHTPKLIAGSSEGGSAVFRLDYKGQ ACLA
Sbjct: 219 RTPANQAIFRIQCQVQIAFREYLQSKGFLEIHTPKLIAGSSEGGSAVFRLDYKGQPACLA 278
Query: 300 QSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVD 359
QSPQLHKQM+ICGD RVFE GPVFRAEDS+THRHLCEF GLDVEMEI+ HYSE+MD+V
Sbjct: 279 QSPQLHKQMAICGDMRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIRMHYSEIMDLVG 338
Query: 360 RLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGD 419
LF IF + C KELE+V KQYPF+ LK+ P+TLRLTF EG+QMLK+AG E+DPLGD
Sbjct: 339 ELFPFIFTKIEERCPKELESVRKQYPFQSLKFLPQTLRLTFAEGIQMLKEAGEEVDPLGD 398
Query: 420 LNTESERKLGQLVLEK 435
LNTESERKLGQLVLEK
Sbjct: 399 LNTESERKLGQLVLEK 414
|
|
| SGD|S000003941 DPS1 "Aspartyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 768 (275.4 bits), Expect = 3.1e-76, P = 3.1e-76
Identities = 178/380 (46%), Positives = 237/380 (62%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGN 121
+NYG +PL +QS + +TG+ + V D+EVL R RVH TR G
Sbjct: 73 DNYGKLPL--IQSRDSDRTGQ-------KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGA 123
Query: 122 KLAFVVVRERVSTVQCLATV-KPDSVSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGAT 180
LAF+ +R++ S +Q L K ++SK MV++ SL+ E IK AT
Sbjct: 124 TLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSAT 183
Query: 181 -QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 238
Q +E+ I K+Y +S + PI +EDASRSEAE E A LP VN DTRL+ RVID
Sbjct: 184 VQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAG-----LPVVNLDTRLDYRVID 238
Query: 239 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY-KGQSAC 297
+RT+ NQ IFRIQ+ V +FR++L ++ F E+HTPKL+ SEGGS+VF + Y KG+ A
Sbjct: 239 LRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGK-AY 297
Query: 298 LAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDI 357
LAQSPQ +KQ I DF RV+E GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D
Sbjct: 298 LAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDT 357
Query: 358 VDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEID 415
+ LFV IF L E+E V KQYP E K K +RLT++EG++ML+ AG EI
Sbjct: 358 LSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIG 417
Query: 416 PLGDLNTESERKLGQLVLEK 435
DL+TE+E+ LG+LV +K
Sbjct: 418 DFEDLSTENEKFLGKLVRDK 437
|
|
| FB|FBgn0002069 Aats-asp "Aspartyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 741 (265.9 bits), Expect = 2.2e-73, P = 2.2e-73
Identities = 159/348 (45%), Positives = 226/348 (64%)
Query: 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE 149
R + V L+G + V +RGRVHT+R G K F+++R++ STVQC+ V D +SK+
Sbjct: 72 RNFVPVSELSGQVGKGLVWVRGRVHTSRAKG-KQCFLILRQQSSTVQCILAVG-DVISKQ 129
Query: 150 MVRFVRSLSNEXXXXXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDAS 207
MV+F ++ E +I+ T+Q +E+ +++++ +S+A A+ P+ IEDAS
Sbjct: 130 MVKFAGNIPKESIIDIQAKPVAVSSKIESCTEQSLELSVEQIFVISQAKAQLPLQIEDAS 189
Query: 208 RSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENF 267
R E + A EG+ + RVNQDTRL+NRV+D+RT ANQ IFR+++ V +FR L + F
Sbjct: 190 RPE-NADDA--EGLNI-RVNQDTRLDNRVLDLRTPANQAIFRLEAGVCRLFRDILTEQGF 245
Query: 268 VEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 327
EIHTPK+I+ +SEGG+ VF + Y SA LAQSPQL+KQM+I DF +V+ G VFRAE
Sbjct: 246 TEIHTPKIISAASEGGANVFTVSYFKDSAYLAQSPQLYKQMAIAADFDKVYTVGAVFRAE 305
Query: 328 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFE 387
DS THRHL EF GLD+EM K HY EV+ + F +IF GL + KE+E+V +QY +
Sbjct: 306 DSNTHRHLTEFVGLDLEMAFKYHYHEVLHTIGNTFTSIFKGLRDKYAKEIESVGQQYKVD 365
Query: 388 PLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
K+ L L F +GV ML++AGVE DL+T +E+ LG+LV K
Sbjct: 366 AFKFLEPPLILQFADGVAMLREAGVETGDEEDLSTPNEKLLGRLVKAK 413
|
|
| ZFIN|ZDB-GENE-061110-135 dars "aspartyl-tRNA synthetase" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 740 (265.6 bits), Expect = 2.8e-73, P = 2.8e-73
Identities = 158/334 (47%), Positives = 220/334 (65%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXX 163
+Q++ +R R+HT+R G K F+V+R + TVQ L V D SK+MV+F +++ E
Sbjct: 87 EQQIWVRARIHTSRAKG-KQCFLVLRHQQFTVQALLAVG-DRASKQMVKFAANITKESII 144
Query: 164 XXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGV 221
+I+ +QQ VE+ +++++ +S++ A+ P+ +EDA R E E +EG
Sbjct: 145 DVEAVVKKVEQKIESCSQQDVELHVERIFVISQSEARLPLQLEDAVRPEGE---GDEEG- 200
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
VNQDTRL+NRVID+RT +Q IFR+QS V +FR L+++ FVEI TPK+I+ +SE
Sbjct: 201 -RATVNQDTRLDNRVIDLRTTTSQAIFRLQSGVCQLFRDTLINKGFVEIQTPKIISAASE 259
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y SA LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 260 GGANVFTVSYFKTSAYLAQSPQLYKQMCICADFDKVFCVGPVFRAEDSNTHRHLTEFVGL 319
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EV+D + V IF GL + + E++ V KQYP EP K+ TLRL ++
Sbjct: 320 DIEMAFSYHYHEVIDSITDTMVQIFKGLRDRFQTEIQTVNKQYPSEPFKFLEPTLRLEYK 379
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
EG+ ML+ AGVE+ DL+T +E+ LG+LV EK
Sbjct: 380 EGLAMLRAAGVEMGDEEDLSTPNEKLLGRLVKEK 413
|
|
| CGD|CAL0001457 DPS1-1 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 737 (264.5 bits), Expect = 5.9e-73, P = 5.9e-73
Identities = 169/385 (43%), Positives = 233/385 (60%)
Query: 59 PLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRP 118
P NYG +PL +N + + ++ +V A +G + V R RVH TR
Sbjct: 90 PAKENYGKLPL-----INSSTRNADEKRILFKDLSV--ANDG----ETVTFRARVHKTRQ 138
Query: 119 VGNKLAFVVVRERVSTVQCLATVKPDS----VSKEMVRFVRSLSNEXXXXXXXXXXXXXX 174
G + F+ +R++ +Q L D+ VSK+MV++ S++ E
Sbjct: 139 QGATMVFLTLRQQSELIQALLKTNKDTDATAVSKQMVKWTGSINLESIVLVEGKVAKVEE 198
Query: 175 EIKGAT-QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRL 232
+IK AT Q VE+ I K+Y + + P+ IEDASRSE E E+ LP VN DTRL
Sbjct: 199 KIKSATVQDVEILISKIYTIQETPEQLPLLIEDASRSEKESEELG-----LPGVNLDTRL 253
Query: 233 NNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYK 292
+ RVID+RT NQ IF+IQS V +FR+FL+ + F EIHTPK+I +SEGGS VF ++Y
Sbjct: 254 DARVIDLRTPTNQAIFKIQSGVCQLFREFLIKKGFTEIHTPKIIGAASEGGSNVFEINYF 313
Query: 293 GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS 352
SA LAQSPQL+KQ I DF +VFE PVFRAE+S THRH+ EFTGLD+EM ++HY
Sbjct: 314 KGSAFLAQSPQLYKQQLIAADFEKVFEIAPVFRAENSNTHRHMTEFTGLDLEMAFEQHYD 373
Query: 353 EVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDA 410
EV+++++ LFV IF L KE+ V KQ+P E K K ++L F+EG+ ML++A
Sbjct: 374 EVLEVLEELFVFIFTELKTRFSKEIATVRKQFPVEEFKIPKDGKMVKLHFKEGIAMLREA 433
Query: 411 GVEIDPLGDLNTESERKLGQLVLEK 435
G E+D DL+TE+E+ LG+LV EK
Sbjct: 434 GKEVDDFEDLSTENEKLLGKLVREK 458
|
|
| UNIPROTKB|P14868 DARS "Aspartate--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 727 (261.0 bits), Expect = 6.7e-72, P = 6.7e-72
Identities = 158/334 (47%), Positives = 217/334 (64%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXX 163
D+ V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ E
Sbjct: 57 DEVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESIV 114
Query: 164 XXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRAA-KTPITIEDASRSEAEIEKASKEGV 221
+I TQQ VE+ ++K+Y +S A + P+ ++DA R EAE E+ EG
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAVRPEAEGEE---EG- 170
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
VNQDTRL+NRVID+RT +Q +FR+QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 171 -RATVNQDTRLDNRVIDLRTSTSQAVFRLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFSIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EVM+ + V IF GL + E++ V KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVMEEIADTMVQIFKGLQERFQTEIQTVNKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
E + ML++AGVE+ DL+T +E+ LG LV EK
Sbjct: 350 EALAMLREAGVEMGDEDDLSTPNEKLLGHLVKEK 383
|
|
| POMBASE|SPCC1223.07c drs1 "cytoplasmic aspartate-tRNA ligase Drs1 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 1.6e-71, Sum P(2) = 1.6e-71
Identities = 156/358 (43%), Positives = 215/358 (60%)
Query: 61 ANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVG 120
A YGD+PL S A GR +T + ++ Q VL+R RV+T+R G
Sbjct: 73 AGKYGDLPLNR------------STARPGRTYTQISDISAKNDGQTVLLRARVYTSRLQG 120
Query: 121 NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGAT 180
NK+ F +R++ T+Q LA V D++SK+MV++ S+S E IK AT
Sbjct: 121 NKMCFFSLRQKYDTIQALAVVNKDTISKQMVKWCGSISLESIVLVEGIVKKSPEIIKSAT 180
Query: 181 -QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEI---EKASKEG-VQLPRVNQDTRLNN 234
Q E+ I +Y +S K P +EDA RSE +I E+ + EG + RVN DTRL+N
Sbjct: 181 VQDAEIHISSIYVISPIKKNLPFLVEDAGRSEEQIRESEENAAEGDSKFVRVNLDTRLDN 240
Query: 235 RVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 294
RV+D+RT NQ IF IQ+ + FR+FLLS +F EIHTPK+ SSEGGS VF++ Y
Sbjct: 241 RVLDLRTPTNQAIFDIQAGICQAFREFLLSNSFNEIHTPKMSGASSEGGSNVFKIQYFKT 300
Query: 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEV 354
L+QSPQL+KQM I D RVFE GPVFRAEDS T+RH+ EFTGLD+EM +HY EV
Sbjct: 301 DGFLSQSPQLYKQMLIAADRERVFEIGPVFRAEDSNTYRHMTEFTGLDLEMAFNEHYHEV 360
Query: 355 MDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP-LKYKPKTLRLTFEEGVQMLKDAG 411
M+ +++LF+ IF + K++ V +QYP E + +R F++ V++LK+AG
Sbjct: 361 MEFIEKLFLYIFKTIREKYAKQVAVVRQQYPSEDFILPDADRIRFHFKDAVKLLKEAG 418
|
|
| MGI|MGI:2442544 Dars "aspartyl-tRNA synthetase" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 722 (259.2 bits), Expect = 2.3e-71, P = 2.3e-71
Identities = 156/334 (46%), Positives = 217/334 (64%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXX 163
D V +R RVHT+R G K F+V+R++ VQ L V D SK+MV+F +++ E
Sbjct: 57 DDVVWVRARVHTSRAKG-KQCFLVLRQQQFNVQALVAVG-DHASKQMVKFAANINKESII 114
Query: 164 XXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRAA-KTPITIEDASRSEAEIEKASKEGV 221
+I TQQ VE+ ++K+Y +S A + P+ ++DA R E E E+ +
Sbjct: 115 DVEGVVRKVNQKIGSCTQQDVELHVQKIYVISLAEPRLPLQLDDAIRPEVEGEEDGRA-- 172
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
VNQDTRL+NRVID+RT +Q IFR+QS + ++FR+ L+++ FVEI TPK+I+ +SE
Sbjct: 173 ---TVNQDTRLDNRVIDLRTSTSQAIFRLQSGICHLFRETLINKGFVEIQTPKIISAASE 229
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y +A LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 230 GGANVFTVSYFKNNAYLAQSPQLYKQMCICADFEKVFCIGPVFRAEDSNTHRHLTEFVGL 289
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EV++ + V IF GL + E++ V+KQ+P EP K+ TLRL +
Sbjct: 290 DIEMAFNYHYHEVVEEIADTLVQIFKGLQERFQTEIQTVSKQFPCEPFKFLEPTLRLEYC 349
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
E + ML++AGVE+D DL+T +E+ LG+LV EK
Sbjct: 350 EALAMLREAGVEMDDEEDLSTPNEKLLGRLVKEK 383
|
|
| UNIPROTKB|Q5ZJQ6 DARS "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 718 (257.8 bits), Expect = 6.1e-71, P = 6.1e-71
Identities = 154/334 (46%), Positives = 215/334 (64%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNEXXX 163
D+ V +RGRVHT+R G K F+V+R++ +Q L V + SK+MV+F +++ E
Sbjct: 59 DEVVWVRGRVHTSRAKG-KQCFLVLRQQQFNIQALVAVGQHA-SKQMVKFAANINKESIV 116
Query: 164 XXXXXXXXXXXEIKGATQQ-VEVQIKKLYCVSRAA-KTPITIEDASRSEAEIEKASKEGV 221
+I G TQQ VE+ ++++Y +S A + P+ ++DA R E E E+ +
Sbjct: 117 DVEGVVRKAHQKIGGCTQQDVELHVQRIYVISLAEPRLPLQLDDAVRPEVEGEEDGRA-- 174
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE 281
VNQDTRL+NRVID+RT +Q +F +QS + +FR+ L+ + FVEI TPK+I+ +SE
Sbjct: 175 ---TVNQDTRLDNRVIDLRTSTSQAVFCLQSGICQLFRETLIRKGFVEIQTPKIISAASE 231
Query: 282 GGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGL 341
GG+ VF + Y SA LAQSPQL+KQM IC DF +VF GPVFRAEDS THRHL EF GL
Sbjct: 232 GGANVFTVSYFKSSAYLAQSPQLYKQMCICADFEKVFCVGPVFRAEDSNTHRHLTEFVGL 291
Query: 342 DVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401
D+EM HY EV+D + V IF GL + E++ V KQ+P EP K+ TLRL +
Sbjct: 292 DIEMAFNYHYHEVVDEIADTLVQIFKGLQERFQAEIQMVNKQFPCEPFKFLEPTLRLEYR 351
Query: 402 EGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
E V ML++AG+E+ DL+T +E+ LG+LV EK
Sbjct: 352 EAVAMLREAGIEMGDEEDLSTPNEKLLGRLVKEK 385
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 6.1.1 | 0.766 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 435 | |||
| PLN02850 | 530 | PLN02850, PLN02850, aspartate-tRNA ligase | 0.0 | |
| PTZ00401 | 550 | PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov | 1e-101 | |
| cd00776 | 322 | cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As | 3e-92 | |
| TIGR00458 | 428 | TIGR00458, aspS_nondisc, nondiscriminating asparty | 8e-87 | |
| PRK05159 | 437 | PRK05159, aspC, aspartyl-tRNA synthetase; Provisio | 6e-86 | |
| COG0017 | 435 | COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas | 1e-82 | |
| pfam00152 | 345 | pfam00152, tRNA-synt_2, tRNA synthetases class II | 1e-42 | |
| cd04320 | 102 | cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, a | 2e-41 | |
| COG0173 | 585 | COG0173, AspS, Aspartyl-tRNA synthetase [Translati | 7e-34 | |
| PRK03932 | 450 | PRK03932, asnC, asparaginyl-tRNA synthetase; Valid | 8e-34 | |
| TIGR00457 | 453 | TIGR00457, asnS, asparaginyl-tRNA synthetase | 3e-30 | |
| TIGR00459 | 583 | TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba | 2e-28 | |
| PRK00476 | 588 | PRK00476, aspS, aspartyl-tRNA synthetase; Validate | 2e-27 | |
| cd00669 | 269 | cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn | 2e-26 | |
| PRK06462 | 335 | PRK06462, PRK06462, asparagine synthetase A; Revie | 9e-25 | |
| PRK12820 | 706 | PRK12820, PRK12820, bifunctional aspartyl-tRNA syn | 1e-18 | |
| cd00777 | 280 | cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c | 5e-18 | |
| PLN02903 | 652 | PLN02903, PLN02903, aminoacyl-tRNA ligase | 2e-16 | |
| cd04100 | 85 | cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter | 7e-14 | |
| cd00775 | 329 | cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c | 2e-13 | |
| TIGR00499 | 496 | TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar | 5e-13 | |
| PLN02502 | 553 | PLN02502, PLN02502, lysyl-tRNA synthetase | 1e-12 | |
| COG1190 | 502 | COG1190, LysU, Lysyl-tRNA synthetase (class II) [T | 4e-10 | |
| PRK12445 | 505 | PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe | 2e-08 | |
| cd04317 | 135 | cd04317, EcAspRS_like_N, EcAspRS_like_N: N-termina | 4e-08 | |
| PTZ00385 | 659 | PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi | 5e-08 | |
| PLN02221 | 572 | PLN02221, PLN02221, asparaginyl-tRNA synthetase | 3e-07 | |
| cd00768 | 211 | cd00768, class_II_aaRS-like_core, Class II tRNA am | 3e-07 | |
| cd04316 | 108 | cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-t | 7e-07 | |
| PLN02603 | 565 | PLN02603, PLN02603, asparaginyl-tRNA synthetase | 1e-06 | |
| PTZ00425 | 586 | PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis | 8e-06 | |
| PRK00484 | 491 | PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | 1e-05 | |
| pfam01336 | 75 | pfam01336, tRNA_anti, OB-fold nucleic acid binding | 5e-05 | |
| PRK09537 | 417 | PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewe | 5e-04 | |
| PLN02532 | 633 | PLN02532, PLN02532, asparagine-tRNA synthetase | 0.002 | |
| PTZ00417 | 585 | PTZ00417, PTZ00417, lysine-tRNA ligase; Provisiona | 0.002 | |
| PRK02983 | 1094 | PRK02983, lysS, lysyl-tRNA synthetase; Provisional | 0.003 |
| >gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase | Back alignment and domain information |
|---|
Score = 699 bits (1807), Expect = 0.0
Identities = 295/426 (69%), Positives = 338/426 (79%), Gaps = 17/426 (3%)
Query: 11 QEEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQ 70
QE V+ S + ISKKAAKK AAK K R EA A AA+A +E+ PLA+NYGDVPL+
Sbjct: 3 QEAVEESGEKISKKAAKKAAAKAEKLRR----EATAKAAAASLEDEDDPLASNYGDVPLE 58
Query: 71 ELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE 130
ELQS V GREWT V L L EVLIRGRVHT R G K AF+V+R+
Sbjct: 59 ELQS-----------KVTGREWTDVSDLGEELAGSEVLIRGRVHTIRGKG-KSAFLVLRQ 106
Query: 131 RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKL 190
TVQC+ V +VSK MV++ + LS ES+VDV GVVSVP +KG TQQVE+Q++K+
Sbjct: 107 SGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKI 166
Query: 191 YCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249
YCVS+A T P +EDA+RSE+EIEKA + G QL RV QDTRLNNRV+D+RT ANQ IFR
Sbjct: 167 YCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFR 226
Query: 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMS 309
IQSQV N+FR+FLLS+ FVEIHTPKLIAG+SEGGSAVFRLDYKGQ ACLAQSPQLHKQM+
Sbjct: 227 IQSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRLDYKGQPACLAQSPQLHKQMA 286
Query: 310 ICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 369
ICGDF RVFE GPVFRAEDS+THRHLCEFTGLD+EMEIK+HYSEV+D+VD LFV IFDGL
Sbjct: 287 ICGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGL 346
Query: 370 NNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLG 429
N CKKELEA+ +QYPFEPLKY PKTLRLTF EG+QMLK+AGVE+DPLGDLNTESERKLG
Sbjct: 347 NERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLKEAGVEVDPLGDLNTESERKLG 406
Query: 430 QLVLEK 435
QLV EK
Sbjct: 407 QLVKEK 412
|
Length = 530 |
| >gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 312 bits (800), Expect = e-101
Identities = 184/458 (40%), Positives = 258/458 (56%), Gaps = 67/458 (14%)
Query: 18 SQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDV----PLQELQ 73
S + + A K++ +E RK A A A A E+ L Y DV P+ +
Sbjct: 2 SSNHADAGAPAVEKKQSDKEARKAARLAEEKARA---AEKAALVEKYKDVFGAAPMVQ-- 56
Query: 74 SVNDPQTGKWSEAVNGREWTVVGALNG-SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV 132
S R + V L+ L D+ VLIR RV TTR G K+AF+V+R+
Sbjct: 57 ----------STTYKSRTFIPVAVLSKPELVDKTVLIRARVSTTRKKG-KMAFMVLRDGS 105
Query: 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIKKLY 191
+VQ +A V+ D V KEM+ F+ + ESIVDV V + I + +E+++KK++
Sbjct: 106 DSVQAMAAVEGD-VPKEMIDFIGQIPTESIVDVEATVCKVEQPITSTSHSDIELKVKKIH 164
Query: 192 CVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250
V+ + +T P T+EDASR E++ EG +VN DTRLN+R +D+RT A+ IFR+
Sbjct: 165 TVTESLRTLPFTLEDASRKESD------EGA---KVNFDTRLNSRWMDLRTPASGAIFRL 215
Query: 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSI 310
QS+V FRQFL+ +F EIH+PK+I SEGG+ VF+L+Y + A LAQSPQL+KQM +
Sbjct: 216 QSRVCQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKLEYFNRFAYLAQSPQLYKQMVL 275
Query: 311 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLN 370
GD RVFE GPVFR+E+S THRHL EF GLDVEM I +HY EV+D+ + LF IF+ L
Sbjct: 276 QGDVPRVFEVGPVFRSENSNTHRHLTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLA 335
Query: 371 NVCKKELEAVAKQYPFEPL-------------------------KYKPKT-------LRL 398
KEL+AV +QYPFEPL KY+ + LR+
Sbjct: 336 T-HTKELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTDKYQARVHNMDSRMLRI 394
Query: 399 TFEEGVQMLKDAGVE-IDPLGDLNTESERKLGQLVLEK 435
+ +++L E + P D+NT +E+ LG+LV E+
Sbjct: 395 NYMHCIELLNTVLEEKMAPTDDINTTNEKLLGKLVKER 432
|
Length = 550 |
| >gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Score = 281 bits (721), Expect = 3e-92
Identities = 96/213 (45%), Positives = 134/213 (62%), Gaps = 4/213 (1%)
Query: 225 RVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS 284
N +T L+NR +D+RT Q IFRI+S+V FR+FL F E+HTPK+ + +EGG+
Sbjct: 1 DANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGA 60
Query: 285 AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
+F++ Y G+ A LAQSPQL+K+M I RV+E GPVFRAE S T RHL EF L+ E
Sbjct: 61 ELFKVSYFGKPAYLAQSPQLYKEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAE 119
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404
M + Y+EVMD+++ L IF + C KELE V Q E LK R+T++E +
Sbjct: 120 MAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELV-NQLNRELLKPLEPFPRITYDEAI 178
Query: 405 QMLKDAGV--EIDPLGDLNTESERKLGQLVLEK 435
++L++ GV E+ DL+TE ER LG++V
Sbjct: 179 ELLREKGVEEEVKWGEDLSTEHERLLGEIVKGD 211
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 322 |
| >gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 270 bits (693), Expect = 8e-87
Identities = 122/327 (37%), Positives = 184/327 (56%), Gaps = 30/327 (9%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164
QEV G VH R +G L FV++R+R +Q T VSK + ++ + L+ ES+V
Sbjct: 13 QEVTFMGWVHEIRDLG-GLIFVLLRDREGLIQ--ITAPAKKVSKNLFKWAKKLNLESVVA 69
Query: 165 VIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQL 223
V G+V +IK E+ K+ ++ AK P+ ++ + AE+
Sbjct: 70 VRGIV-----KIKEKAPGGFEIIPTKIEVIN-EAKEPLPLDPTEKVPAEL---------- 113
Query: 224 PRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGG 283
DTRL+ R +D+R Q IFRI+S V R+FL E F+E+HTPKL+A ++EGG
Sbjct: 114 -----DTRLDYRFLDLRRPTVQAIFRIRSGVLESVREFLAEEGFIEVHTPKLVASATEGG 168
Query: 284 SAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
+ +F + Y + A L QSPQL+KQ + F RV+E GP+FRAE+ THRHL E T +D+
Sbjct: 169 TELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTHRHLNEATSIDI 228
Query: 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403
EM + H +VMDI++ L V +F+ + C +LE + + K+ RLT++E
Sbjct: 229 EMAFEDH-HDVMDILEELVVRVFEDVPERCAHQLETLEFKLEKPEGKFV----RLTYDEA 283
Query: 404 VQMLKDAGVEIDPLGDLNTESERKLGQ 430
++M GVEI DL+TE+E+ LG+
Sbjct: 284 IEMANAKGVEIGWGEDLSTEAEKALGE 310
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn) [Protein synthesis, tRNA aminoacylation]. Length = 428 |
| >gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 268 bits (689), Expect = 6e-86
Identities = 121/331 (36%), Positives = 189/331 (57%), Gaps = 28/331 (8%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164
+EV + G VH R +G +AF+++R+R +Q VK +E+ ++ L ES+V
Sbjct: 17 EEVTLAGWVHEIRDLG-GIAFLILRDRSGIIQV--VVKKKVD-EELFETIKKLKRESVVS 72
Query: 165 VIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLP 224
V G V A VEV +++ +++A + P+ ++ + + AE+
Sbjct: 73 VTGTV----KANPKAPGGVEVIPEEIEVLNKA-EEPLPLDISGKVLAEL----------- 116
Query: 225 RVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS 284
DTRL+NR +D+R + IF+I+S+V FR+FL F EI TPK++A +EGG+
Sbjct: 117 ----DTRLDNRFLDLRRPRVRAIFKIRSEVLRAFREFLYENGFTEIFTPKIVASGTEGGA 172
Query: 285 AVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
+F +DY + A LAQSPQL+KQM + F RVFE GPVFRAE+ T RHL E+T +DVE
Sbjct: 173 ELFPIDYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHNTSRHLNEYTSIDVE 232
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404
M + +VMD+++ L +++ + C+KELE + + P R+T++E +
Sbjct: 233 MGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELPVPETPIP----RITYDEAI 288
Query: 405 QMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
++LK G EI DL+TE ER LG+ V E+
Sbjct: 289 EILKSKGNEISWGDDLDTEGERLLGEYVKEE 319
|
Length = 437 |
| >gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 260 bits (667), Expect = 1e-82
Identities = 109/327 (33%), Positives = 165/327 (50%), Gaps = 31/327 (9%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164
QEV +RG VH R +G K+ F+V+R+ +Q V + V +E+ + + L+ ES V
Sbjct: 17 QEVTVRGWVHNKRDLG-KIIFLVLRDGSGFIQA--VVPKNKVYEELFKA-KKLTLESSVV 72
Query: 165 VIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQL 223
V G+V A Q E+Q++K+ + A PI ++
Sbjct: 73 VTGIV----KASPKAPQGFELQVEKIEVLGEADPPYPIDKKE------------------ 110
Query: 224 PRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGG 283
+T L+NR +D+RT Q +F+I+S + R+F F E+HTP + A ++EGG
Sbjct: 111 -HSELETLLDNRHLDLRTPKIQAVFKIRSSILRAIREFFYENGFTEVHTPIITASATEGG 169
Query: 284 SAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
+F++DY + A L QSPQL+K+ RVF GP FRAE S T RHL EF LD
Sbjct: 170 GELFKVDYFDKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSNTRRHLSEFWMLDP 228
Query: 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403
EM ++VMD+ + L +F + C ELE + + R+T++E
Sbjct: 229 EMAFADL-NDVMDLAEELIKYLFKKVLEECADELEFLGRDNSELKRPESAPFPRITYKEA 287
Query: 404 VQMLKDAGVEIDPLG-DLNTESERKLG 429
+++L++ G E G DL TE ER LG
Sbjct: 288 IEILEEKGFEKVEWGDDLGTEHERYLG 314
|
Length = 435 |
| >gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) | Back alignment and domain information |
|---|
Score = 152 bits (387), Expect = 1e-42
Identities = 61/196 (31%), Positives = 96/196 (48%), Gaps = 14/196 (7%)
Query: 227 NQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAV 286
+++TRL R +D+R Q +++S++ R+FL F+E+ TP L + EGG+
Sbjct: 1 SEETRLKYRYLDLRRPKMQANLKLRSKIIKAIREFLDERGFLEVETPILTKSTPEGGARD 60
Query: 287 FRLDYK--GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
F + K + A L QSPQL+KQ+ + F RVF+ P FR ED T RH EFT LD+E
Sbjct: 61 FLVPSKFYAKEAYLPQSPQLYKQLLMVAGFDRVFQIAPCFRDEDLRTDRHPPEFTQLDLE 120
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404
M Y +VMD+ + L +F + ++ + F R+T+ E +
Sbjct: 121 MSFVD-YEDVMDLTEDLIKYVFKKVLGKREELELLGIELPEFP---------RITYAEAI 170
Query: 405 QMLKDAGVEIDPLGDL 420
+ + D L
Sbjct: 171 ERYG--SDKPDLRFGL 184
|
Length = 345 |
| >gnl|CDD|239815 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 2e-41
Identities = 53/102 (51%), Positives = 70/102 (68%), Gaps = 2/102 (1%)
Query: 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDV 165
EVLIR RVHT+R G KLAF+V+R++ T+Q + + VSK+MV++ SLS ESIVDV
Sbjct: 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDV 60
Query: 166 IGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRAAKT-PITIED 205
G V P+ IK TQQ VE+ I+K+Y VS AA+ P +ED
Sbjct: 61 EGTVKKPEEPIKSCTQQDVELHIEKIYVVSEAAEPLPFQLED 102
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Length = 102 |
| >gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 7e-34
Identities = 86/308 (27%), Positives = 133/308 (43%), Gaps = 48/308 (15%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q V + G VH R G L F+ +R+R VQ + S E
Sbjct: 7 GELRESHVGQTVTLSGWVHRRRDHG-GLIFIDLRDREGIVQVVFD---PEDSPEAFEVAS 62
Query: 156 SLSNESIVDVIGVVSV-PDVEI--KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAE 212
L NE ++ V G V P+ I T ++EV +++ ++ + P IED
Sbjct: 63 RLRNEFVIQVTGTVRARPEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDE------ 116
Query: 213 IEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHT 272
+++ RL R +D+R Q +++S+V R FL + F+EI T
Sbjct: 117 -----------TNASEEIRLKYRYLDLRRPEMQKNLKLRSKVTKAIRNFLDDQGFLEIET 165
Query: 273 PKLIAGSSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325
P L + EG R D+ G+ L QSPQL KQ+ + F R ++ FR
Sbjct: 166 PILTKSTPEGA----R-DFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFR 220
Query: 326 AEDSYTHRHLCEFTGLDVEME-IKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY 384
ED R EFT +D+EM + + +VM+++++L +F V EL+
Sbjct: 221 DEDLRADRQP-EFTQIDLEMSFVDEE--DVMELIEKLLRYVF---KEVKGIELKT----- 269
Query: 385 PFEPLKYK 392
PF + Y
Sbjct: 270 PFPRMTYA 277
|
Length = 585 |
| >gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 8e-34
Identities = 92/356 (25%), Positives = 148/356 (41%), Gaps = 51/356 (14%)
Query: 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVR 152
++ L G QEV +RG V T R G K+AF+ +R+ Q E
Sbjct: 5 SIKDILKGKYVGQEVTVRGWVRTKRDSG-KIAFLQLRDGSCFKQLQVVKDNGE---EYFE 60
Query: 153 FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEA 211
++ L+ S V V G V VE A Q E+Q K+ + + PI + S
Sbjct: 61 EIKKLTTGSSVIVTGTV----VESPRAGQGYELQATKIEVIGEDPEDYPIQKKRHSI--- 113
Query: 212 EIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIH 271
+ + RT + RI++ + +F FV +
Sbjct: 114 -----------------EFLREIAHLRPRTNKFGAVMRIRNTLAQAIHEFFNENGFVWVD 156
Query: 272 TPKLIAGSSEGGSAVFRL---------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGP 322
TP + A EG +FR+ D+ G+ A L S QL+ + G+V+ GP
Sbjct: 157 TPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMA-LGKVYTFGP 215
Query: 323 VFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDG-LNNVCKKELEAVA 381
FRAE+S T RHL EF ++ EM + MD+ + + + L N C +LE +
Sbjct: 216 TFRAENSNTRRHLAEFWMIEPEMAFADL-EDNMDLAEEMLKYVVKYVLEN-CPDDLEFLN 273
Query: 382 KQYP---FEPLK--YKPKTLRLTFEEGVQMLKDAGVEIDPL---G-DLNTESERKL 428
++ E L+ + R+T+ E +++L+ +G + + G DL +E ER L
Sbjct: 274 RRVDKGDIERLENFIESPFPRITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYL 329
|
Length = 450 |
| >gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-30
Identities = 81/344 (23%), Positives = 146/344 (42%), Gaps = 44/344 (12%)
Query: 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162
EV + G V T R K+ F+ + + S++ + V + + + ++SL+ S
Sbjct: 15 VGDEVTVSGWVRTKRSSK-KIIFLELNDG-SSLGPIQAVINGEDNPYLFQLLKSLTTGSS 72
Query: 163 VDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQ 222
V V G V VE G Q VE+Q+KK+ V A + Q
Sbjct: 73 VSVTGKV----VESPGKGQPVELQVKKIEVVGEAEPDDYPL------------------Q 110
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+ + + + +RT + R+++ + ++ F + P L + EG
Sbjct: 111 KKEHSLEFLRDIAHLRLRTNTLGAVMRVRNALSQAIHRYFQENGFTWVSPPILTSNDCEG 170
Query: 283 GSAVFRL---------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333
+FR+ D+ G+ A L S QL+ + +V+ GP FRAE S T R
Sbjct: 171 AGELFRVSTGNIDFSQDFFGKEAYLTVSGQLYLETYALA-LSKVYTFGPTFRAEKSNTSR 229
Query: 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP 393
HL EF ++ EM ++++ + + L I + C +EL+ + K + + +K
Sbjct: 230 HLSEFWMIEPEMAFAN-LNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLE 288
Query: 394 KTL-----RLTFEEGVQMLKDAG--VEIDPL--GDLNTESERKL 428
+ R+T+ + +++LK++ E + DL TE ER L
Sbjct: 289 NIINNKFARITYTDAIEILKESDKNFEYEDFWGDDLQTEHERFL 332
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn [Protein synthesis, tRNA aminoacylation]. Length = 453 |
| >gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 2e-28
Identities = 79/308 (25%), Positives = 132/308 (42%), Gaps = 49/308 (15%)
Query: 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV 154
G L Q V + G V+ R +G L F+ +R+R VQ PD+ + ++ + +
Sbjct: 6 CGQLRTEHLGQTVTLAGWVNRRRDLG-GLIFIDLRDRSGIVQ--VVCDPDADALKLAKGL 62
Query: 155 RSLSNESIVDVIGVVSVPDVEIKG---ATQQVEVQIKKLYCVSRAAKTPITIEDASRSEA 211
R NE +V V G VS T ++E+ + + ++++ P+ IE
Sbjct: 63 R---NEDVVQVKGKVSARPEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEKTD---- 115
Query: 212 EIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIH 271
++ RL R +D+R Q +++ +V R FL + F+EI
Sbjct: 116 --------------AEEEVRLKYRYLDLRRPEMQQRLKLRHKVTKAVRNFLDQQGFLEIE 161
Query: 272 TPKLIAGSSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324
TP L + EG DY KG+ L QSPQL KQ+ + R ++ F
Sbjct: 162 TPMLTKSTPEGAR-----DYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCF 216
Query: 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY 384
R ED R EFT +D+EM +VM+++++L +F E++ + +
Sbjct: 217 RDEDLRADRQ-PEFTQIDMEMSFMTQ-EDVMELIEKLVSHVF--------LEVKGIDLKK 266
Query: 385 PFEPLKYK 392
PF + Y
Sbjct: 267 PFPVMTYA 274
|
Asparate--tRNA ligases in this family may be discriminating (6.1.1.12) or nondiscriminating (6.1.1.23). In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences [Protein synthesis, tRNA aminoacylation]. Length = 583 |
| >gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 2e-27
Identities = 92/322 (28%), Positives = 140/322 (43%), Gaps = 67/322 (20%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q V + G VH R G L F+ +R+R VQ PD+ + E+
Sbjct: 9 GELRESHVGQTVTLCGWVHRRRDHGG-LIFIDLRDREGIVQV--VFDPDAEAFEVAE--- 62
Query: 156 SLSNESIVDVIGVVSV-PDVEI--KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAE 212
SL +E ++ V G V P+ + T ++EV +L ++++ P I+D E
Sbjct: 63 SLRSEYVIQVTGTVRARPEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDD------E 116
Query: 213 IEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHT 272
+ V+++ RL R +D+R Q +++S+V + R FL F+EI T
Sbjct: 117 ED-----------VSEELRLKYRYLDLRRPEMQKNLKLRSKVTSAIRNFLDDNGFLEIET 165
Query: 273 PKLIAGSSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325
P L + EG A R DY G+ L QSPQL KQ+ + F R ++ FR
Sbjct: 166 PILTKSTPEG--A--R-DYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFR 220
Query: 326 AEDSYTHRHLCEFTGLDVEMEIKKHYS-----EVMDIVDRLFVTIFDGLNNVCKKELEAV 380
ED R EFT +D+EM S +VM +++ L +F V +L
Sbjct: 221 DEDLRADRQP-EFTQIDIEM------SFVTQEDVMALMEGLIRHVF---KEVLGVDLPT- 269
Query: 381 AKQYPFEPLKYKPKTLRLTFEE 402
PF R+T+ E
Sbjct: 270 ----PFP---------RMTYAE 278
|
Length = 588 |
| >gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 2e-26
Identities = 46/162 (28%), Positives = 72/162 (44%), Gaps = 11/162 (6%)
Query: 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSACLAQSPQLH 305
F+++S++ R F+ F+E+ TP L + G+ F + Y G L SPQL
Sbjct: 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLF 60
Query: 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365
K+ + G RVFE FR ED RH EFT +D+EM Y +V+++ +RL +
Sbjct: 61 KKRLMVGGLDRVFEINRNFRNEDL-RARHQPEFTMMDLEMAFAD-YEDVIELTERLVRHL 118
Query: 366 FDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 407
+ V + P RLT+ E ++
Sbjct: 119 AREVLGVTAVTYG----FELEDFGLPFP---RLTYREALERY 153
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. Length = 269 |
| >gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 9e-25
Identities = 60/191 (31%), Positives = 91/191 (47%), Gaps = 15/191 (7%)
Query: 247 IFRIQSQVGNIFRQFLLSENFVEIHTP-------KLIAGSSEGGSAVFRLDYKGQSACLA 299
+ ++QS + R+FL FVE+ P L+ S+ +D+ G LA
Sbjct: 29 VLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLA 88
Query: 300 QSPQLHKQMSICGDFGRVFETGPVFRAE--DSYTHRHLCEFTGLDVEMEIKKHYSEVMDI 357
S LHKQ+++ G++F P FR E D T RHL EFT LD+E+E EVMD+
Sbjct: 89 DSMILHKQLAL-RMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIE-GADLDEVMDL 146
Query: 358 VDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPL 417
++ L + L + ELE + P K R+T +E V++L + G L
Sbjct: 147 IEDLIKYLVKELLEEHEDELEFFGRDLP----HLKRPFKRITHKEAVEILNEEGCRGIDL 202
Query: 418 GDLNTESERKL 428
+L +E E+ L
Sbjct: 203 EELGSEGEKSL 213
|
Length = 335 |
| >gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Score = 88.1 bits (218), Expect = 1e-18
Identities = 81/259 (31%), Positives = 115/259 (44%), Gaps = 25/259 (9%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L+ +EV + G V R G L F+ +R+R +Q A P++ ++
Sbjct: 10 GHLSLDDTGREVCLAGWVDAFRDHGELL-FIHLRDRNGFIQ--AVFSPEAAPADVYELAA 66
Query: 156 SLSNESIVDVIGVVSV-------PDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASR 208
SL E V + G V P +E T +EV +++L ++ + P I D
Sbjct: 67 SLRAEFCVALQGEVQKRLEETENPHIE----TGDIEVFVRELSILAASEALPFAISD--- 119
Query: 209 SEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFV 268
+A A G VN+D RL R +DIR A Q + ++ R FL S F+
Sbjct: 120 -KAMTAGAGSAGAD--AVNEDLRLQYRYLDIRRPAMQDHLAKRHRIIKCARDFLDSRGFL 176
Query: 269 EIHTPKLIAGSSEGGSAVF---RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325
EI TP L + EG R+ K A L QSPQL KQ+ + F R F+ FR
Sbjct: 177 EIETPILTKSTPEGARDYLVPSRIHPKEFYA-LPQSPQLFKQLLMIAGFERYFQLARCFR 235
Query: 326 AEDSYTHRHLCEFTGLDVE 344
ED +R EFT LD+E
Sbjct: 236 DEDLRPNRQ-PEFTQLDIE 253
|
Length = 706 |
| >gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Score = 83.4 bits (207), Expect = 5e-18
Identities = 50/150 (33%), Positives = 73/150 (48%), Gaps = 18/150 (12%)
Query: 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVF----RLDYKGQSACLAQSPQ 303
R++S+V R FL + FVEI TP L S+ G+ F RL + G+ L QSPQ
Sbjct: 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTK-STPEGARDFLVPSRL-HPGKFYALPQSPQ 58
Query: 304 LHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEME-IKKHYSEVMDIVDRLF 362
L KQ+ + F R F+ FR ED R EFT +D+EM + + ++M +++ L
Sbjct: 59 LFKQLLMVSGFDRYFQIARCFRDEDLRADRQ-PEFTQIDIEMSFVDQE--DIMSLIEGLL 115
Query: 363 VTIFDGLNNVCKKELEAVAKQYPFEPLKYK 392
+F KE+ V PF + Y
Sbjct: 116 KYVF--------KEVLGVELTTPFPRMTYA 137
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. Length = 280 |
| >gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 2e-16
Identities = 87/304 (28%), Positives = 121/304 (39%), Gaps = 56/304 (18%)
Query: 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDV 165
V + G V R +G L F+ VR+ VQ PD E R L NE +V V
Sbjct: 74 RVTLCGWVDLHRDMGG-LTFLDVRDHTGIVQ--VVTLPDE-FPEAHRTANRLRNEYVVAV 129
Query: 166 IGVV---SVPDVEIKGATQQVEV---QIKKLYCVSRAAKTPITIEDASRSEAEIEKASKE 219
G V K T VEV + L V+++ +T A+ +K
Sbjct: 130 EGTVRSRPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVT-------TADEQK---- 178
Query: 220 GVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLS-ENFVEIHTPKLIAG 278
+ ++ RL RV+D+R R++ +V + R++L FVEI TP L
Sbjct: 179 ----DSIKEEVRLRYRVLDLRRPQMNANLRLRHRVVKLIRRYLEDVHGFVEIETPILSRS 234
Query: 279 SSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331
+ EG DY G L QSPQL KQM + F R ++ FR ED
Sbjct: 235 TPEGA-----RDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCFRDEDLRA 289
Query: 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNN--VCK--KELEAVAKQYPFE 387
R EFT LD+E+ + D L LN + + KE++ V PF
Sbjct: 290 DRQ-PEFTQLDMELAF-------TPLEDML------KLNEDLIRQVFKEIKGVQLPNPFP 335
Query: 388 PLKY 391
L Y
Sbjct: 336 RLTY 339
|
Length = 652 |
| >gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 7e-14
Identities = 28/90 (31%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDV 165
EV + G VH+ R G L F+ +R+ VQ + E L ES+V V
Sbjct: 1 EVTLAGWVHSRRDHG-GLIFIDLRDGSGIVQVVV---NKEELGEFFEEAEKLRTESVVGV 56
Query: 166 IGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195
G V V E AT ++E+Q ++L +S+
Sbjct: 57 TGTV-VKRPEGNLATGEIELQAEELEVLSK 85
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like AspRSs which are non-discriminating and can charge both tRNAAsp and tRNAAsn. E. coli cells have two isoforms of LysRSs (LysS and LysU) encoded by two distinct genes, which are differentially regulated. The cytoplasmic and the mitochondrial isoforms of human LysRS are encoded by a single gene. Yeast cytoplasmic and mitochondrial LysRSs participate in mitochondrial import of cytoplasmic tRNAlysCUU. In addition to their housekeeping role, human LysRS may function as a signaling molecule that activates immune cells. Tomato LysRS may participate in a process possibly connected to conditions of oxidative-stress conditions or heavy metal uptake. It is known that human tRNAlys and LysRS are specifically packaged into HIV-1 suggesting a role for LysRS in tRNA packaging. AsnRS is immunodominant antigen of the filarial nematode Brugia malayai and is of interest as a target for anti-parasitic drug design. Human AsnRS has been shown to be a pro-inflammatory chemokine which interacts with CCR3 chemokine receptors on T cells, immature dendritic cells and macrophages. Length = 85 |
| >gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Score = 70.7 bits (174), Expect = 2e-13
Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 29/191 (15%)
Query: 248 FRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSA--------VFRLDYKGQSAC 297
F ++S++ + R+FL F+E+ TP L IAG G +A +D
Sbjct: 8 FIVRSKIISYIRKFLDDRGFLEVETPMLQPIAG---GAAARPFITHHNALDMDLY----- 59
Query: 298 LAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDI 357
L +P+L+ + I G F RV+E G FR E H EFT ++ Y+++MD+
Sbjct: 60 LRIAPELYLKRLIVGGFERVYEIGRNFRNE-GIDLTHNPEFTMIEFYEAYAD-YNDMMDL 117
Query: 358 VDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPL 417
+ LF + + + K +Y + L + P R+T + ++ + G++ L
Sbjct: 118 TEDLFSGL---VKKINGKT----KIEYGGKELDFTPPFKRVTMVDALK--EKTGIDFPEL 168
Query: 418 GDLNTESERKL 428
E KL
Sbjct: 169 DLEQPEELAKL 179
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Length = 329 |
| >gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 5e-13
Identities = 80/334 (23%), Positives = 137/334 (41%), Gaps = 57/334 (17%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161
K+ EV I GR+ R K F+ +++ +Q V D + ++ F L +
Sbjct: 51 DKNIEVSIAGRIMARR-SMGKATFITLQDESGQIQLY--VNKDDLPEDFYEFDEYLLD-- 105
Query: 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
+ D+IGV P K T ++ V + +L +++A + D G+
Sbjct: 106 LGDIIGVTGYP---FKTKTGELSVHVTELQILTKALRPL---PDKFH-----------GL 148
Query: 222 QLPRVNQDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS 280
+Q+TR R +D I ++ F ++S++ R+FL F+E+ TP L
Sbjct: 149 T----DQETRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPML---QV 201
Query: 281 EGGSAVFR--------LD---YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329
G A R LD Y L +P+L+ + I G F +V+E G FR E
Sbjct: 202 IPGGANARPFITHHNALDMDLY------LRIAPELYLKRLIVGGFEKVYEIGRNFRNE-G 254
Query: 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPL 389
H EFT ++ Y ++MD+ + LF + ++ L Y +
Sbjct: 255 VDTTHNPEFTMIEFYQAYAD-YEDLMDLTENLFKFL-------AQELLGTTKITYGELEI 306
Query: 390 KYKPKTLRLTFEEGVQML-KDAGVEIDPLGDLNT 422
+K R+T E ++ + G++ D L D T
Sbjct: 307 DFKKPFKRITMVEAIKKYDMETGIDFDDLKDFET 340
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms [Protein synthesis, tRNA aminoacylation]. Length = 496 |
| >gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 69.2 bits (170), Expect = 1e-12
Identities = 96/374 (25%), Positives = 160/374 (42%), Gaps = 60/374 (16%)
Query: 15 DSSSQSISKKAAKKE--AAKKAKEERRKEAEAAASAASALSIEEEGPLA--------NNY 64
+S+ + +SK A KK A + +E+ KE AA+AA+A A Y
Sbjct: 2 ESNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQY 61
Query: 65 GDVPLQELQSV----NDPQTGKWSEAVNGREW-TVVGAL-NGS-LKDQEVLIRGRVHTTR 117
L++++++ +P K+ E G+L NG L+D V + GR+ R
Sbjct: 62 RANRLKKVEALRAKGVEPYPYKFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKR 121
Query: 118 PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177
G KLAF +R+ +Q A K + + F + S D++GV P
Sbjct: 122 AFG-KLAFYDLRDDGGKIQLYADKK--RLDLDEEEFEKLHSLVDRGDIVGVTGTP----- 173
Query: 178 GATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPR-----VNQDTRL 232
G T++ E+ I + E +K + LP +Q+TR
Sbjct: 174 GKTKKGELSI----FPT-----------------SFEVLTKCLLMLPDKYHGLTDQETRY 212
Query: 233 NNRVIDIRTLAN---QGIFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVF 287
R +D+ +AN + IFR ++++ + R+FL F+E+ TP L IAG + V
Sbjct: 213 RQRYLDL--IANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVT 270
Query: 288 RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347
+ L + +LH + + G F RV+E G FR E T RH EFT +
Sbjct: 271 HHNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQFRNEGIST-RHNPEFTTCEFYQAY 329
Query: 348 KKHYSEVMDIVDRL 361
Y+++M++ + +
Sbjct: 330 AD-YNDMMELTEEM 342
|
Length = 553 |
| >gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Score = 61.1 bits (149), Expect = 4e-10
Identities = 52/205 (25%), Positives = 85/205 (41%), Gaps = 28/205 (13%)
Query: 228 QDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGS 284
++ R R +D I ++ F +S++ R+FL F+E+ TP L I G G +
Sbjct: 159 KEIRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQPIPG---GAA 215
Query: 285 A-VFRLDYKGQSACLAQ--SPQLHKQMSICGDFGRVFETGPVFRAED-SYTHRHLCEFTG 340
A F + L +P+L+ + I G F RVFE G FR E TH EFT
Sbjct: 216 ARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVFEIGRNFRNEGIDTTHNP--EFTM 273
Query: 341 LD---VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLR 397
L+ + Y ++MD+ + L + K+ Y + + + R
Sbjct: 274 LEFYQAYAD----YEDLMDLTEELIKE-------LAKEVNGTTKVTYGGQEIDFSKPFKR 322
Query: 398 LTFEEGVQMLKDAGVEIDPLGDLNT 422
+T + ++ GV+ D L D
Sbjct: 323 ITMVDALKE--YLGVDFDDLFDDEE 345
|
Length = 502 |
| >gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 2e-08
Identities = 38/142 (26%), Positives = 73/142 (51%), Gaps = 5/142 (3%)
Query: 227 NQDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP--KLIAGSSEGG 283
+Q+ R R +D I ++ F ++S++ RQF+++ F+E+ TP ++I G +
Sbjct: 162 DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASAR 221
Query: 284 SAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
+ + L +P+L+ + + G F RVFE FR E + RH EFT +++
Sbjct: 222 PFITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNE-GISVRHNPEFTMMEL 280
Query: 344 EMEIKKHYSEVMDIVDRLFVTI 365
M Y +++++ + LF T+
Sbjct: 281 YMAYAD-YHDLIELTESLFRTL 301
|
Length = 505 |
| >gnl|CDD|239812 cd04317, EcAspRS_like_N, EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 4e-08
Identities = 40/148 (27%), Positives = 60/148 (40%), Gaps = 25/148 (16%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S QEV + G V R G L F+ +R+R VQ + P+
Sbjct: 6 GELRESHVGQEVTLCGWVQRRRDHG-GLIFIDLRDRYGIVQVV--FDPEE--APEFELAE 60
Query: 156 SLSNESIVDVIGVVSV---PDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAE 212
L NES++ V G V V K T ++EV +L +++A P I+D
Sbjct: 61 KLRNESVIQVTGKVRARPEGTVNPKLPTGEIEVVASELEVLNKAKTLPFEIDDDV----- 115
Query: 213 IEKASKEGVQLPRVNQDTRLNNRVIDIR 240
V+++ RL R +D+R
Sbjct: 116 ------------NVSEELRLKYRYLDLR 131
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with mitochondrial protein synthesis. Human mtAspRS participates in mitochondrial biosynthesis; this enzyme been shown to charge E.coli native tRNAsp in addition to in vitro transcribed human mitochondrial tRNAsp. T. thermophilus is rare among bacteria in having both a D_AspRS and a ND_AspRS. H.pylori ND-AspRS can charge both tRNAASp and tRNAAsn, it is fractionally more efficient at aminoacylating tRNAAsp over tRNAAsn. The H.pylori genome does not contain AsnRS. Length = 135 |
| >gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (132), Expect = 5e-08
Identities = 88/415 (21%), Positives = 152/415 (36%), Gaps = 75/415 (18%)
Query: 21 ISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQT 80
ISK +A K ++A R + + A+ +S I + YG +
Sbjct: 53 ISKASATKTVTQEASRAPRSKLDLPAAYSSFRGITPISEVRERYGYL------------- 99
Query: 81 GKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLAT 140
A R V + GRV + R +G K+ FV +R + +Q +
Sbjct: 100 -----ASGDRAAQAT-----------VRVAGRVTSVRDIG-KIIFVTIRSNGNELQVVGQ 142
Query: 141 VKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTP 200
V +++ + SL + D+IG VP R +
Sbjct: 143 VGEHFTREDLKKLKVSLR---VGDIIGADGVP---------------------CRMQRGE 178
Query: 201 ITIEDASRSEAEIEKASKEGVQLPRV-------NQDTRLNNRVIDIRTLANQGIF---RI 250
+++ ASR + V P + + D + R D+ T N + +
Sbjct: 179 LSVA-ASRMLILSPYVCTDQVVCPNLRGFTVLQDNDVKYRYRFTDMMT--NPCVIETIKK 235
Query: 251 QSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQM 308
+ + R + NFVE+ TP L +A + S V + L +P+LH +
Sbjct: 236 RHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQ 295
Query: 309 SICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH-YSEVMDIVDRLFVTIFD 367
I G R++E G VFR ED+ H EFT E H Y ++M + + +F +
Sbjct: 296 CIVGGMERIYEIGKVFRNEDA-DRSHNPEFT--SCEFYAAYHTYEDLMPMTEDIFRQLAM 352
Query: 368 GLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNT 422
+N ++ + R++ + +Q + +GVE P +LNT
Sbjct: 353 RVNGTTVVQIYPENAHGNPVTVDLGKPFRRVSVYDEIQRM--SGVEFPPPNELNT 405
|
Length = 659 |
| >gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 3e-07
Identities = 47/158 (29%), Positives = 79/158 (50%), Gaps = 14/158 (8%)
Query: 290 DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 349
D+ G+ A L S QL + C V+ GP FRAE+S+T RHL EF ++ E+
Sbjct: 303 DFFGRQAFLTVSGQLQVETYACA-LSSVYTFGPTFRAENSHTSRHLAEFWMVEPEIAFAD 361
Query: 350 HYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP---FEPLKYKPKTL--RLTFEEGV 404
+ M+ + + L + C ++E +AK + + L+ T R+T+ E +
Sbjct: 362 LEDD-MNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRITYTEAI 420
Query: 405 QMLKDA---GVEID---PLG-DLNTESERKLGQLVLEK 435
++L++A G E D G DL +E ER L +++ +K
Sbjct: 421 ELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVLFQK 458
|
Length = 572 |
| >gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 3e-07
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 16/121 (13%)
Query: 258 FRQFLLSENFVEIHTPKLIAGSSEGGSA------VFRLDYKGQSACLAQSPQLHKQMS-- 309
R+F+ F E+ TP + + + + L + +
Sbjct: 9 LRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFV 68
Query: 310 --ICGDFGRVFETGPVFRAED-SYTHRHLCEFTGLDVEM-----EIKKHYSEVMDIVDRL 361
I R+ E GP FR E R + EFT L+ E+ E + E++++ + L
Sbjct: 69 SHIRKLPLRLAEIGPAFRNEGGRRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEEL 128
Query: 362 F 362
Sbjct: 129 L 129
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. Length = 211 |
| >gnl|CDD|239811 cd04316, ND_PkAspRS_like_N, ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 7e-07
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 3/65 (4%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164
+EV + G VH R +G + FV++R+R VQ T V KE+ + VR LS ES++
Sbjct: 13 EEVTVAGWVHEIRDLG-GIKFVILRDREGIVQ--VTAPKKKVDKELFKTVRKLSRESVIS 69
Query: 165 VIGVV 169
V G V
Sbjct: 70 VTGTV 74
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. Length = 108 |
| >gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Score = 50.4 bits (120), Expect = 1e-06
Identities = 73/307 (23%), Positives = 125/307 (40%), Gaps = 63/307 (20%)
Query: 105 QEVLIRGRVHTTRPVGNKLAFVVVRER--VSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162
+ + + G V T R + + F+ V + +S +QC+ T PD+ + V + S+
Sbjct: 108 KTLNVMGWVRTLR-AQSSVTFIEVNDGSCLSNMQCVMT--PDAEGYDQVESGLITTGASV 164
Query: 163 VDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGV 221
+ V G V V +G Q+VE+++ K+ V ++ + PI + SR
Sbjct: 165 L-VQGTV----VSSQGGKQKVELKVSKIVVVGKSDPSYPIQKKRVSR------------- 206
Query: 222 QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP-------- 273
+ R R RT + R+++ + +F FV + +P
Sbjct: 207 EFLRTKAHLR-------PRTNTFGAVARVRNALAYATHKFFQENGFVWVSSPIITASDCE 259
Query: 274 ---------KLIAGSSE-GGSAVFRL------------DYKGQSACLAQSPQLHKQMSIC 311
LI S+E GGS V + D+ G+ A L S QL+ + +
Sbjct: 260 GAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLNGE-TYA 318
Query: 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNN 371
V+ GP FRAE+S T RHL EF ++ E+ ++ L + L N
Sbjct: 319 TALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFADLNDDMACATAYLQYVVKYILEN 378
Query: 372 VCKKELE 378
CK+++E
Sbjct: 379 -CKEDME 384
|
Length = 565 |
| >gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 47.7 bits (113), Expect = 8e-06
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 25/133 (18%)
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+PRVN+ + + DI N S N A SS
Sbjct: 269 IPRVNKKNKKGEKREDILNTCNANNNNGNSSSSN--------------------AVSSPA 308
Query: 283 GSAVFRLDYK----GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEF 338
+ +DYK + A L S QL + ++C G V+ GP FRAE+S+T RHL EF
Sbjct: 309 YPDQYLIDYKKDFFSKQAFLTVSGQLSLE-NLCSSMGDVYTFGPTFRAENSHTSRHLAEF 367
Query: 339 TGLDVEMEIKKHY 351
++ E+ Y
Sbjct: 368 WMIEPEIAFADLY 380
|
Length = 586 |
| >gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 47.0 bits (113), Expect = 1e-05
Identities = 44/141 (31%), Positives = 66/141 (46%), Gaps = 32/141 (22%)
Query: 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVFR--------LD---YKG 293
FR +S++ + R+FL + F+E+ TP L IAG G +A R LD Y
Sbjct: 171 TFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAG---GAAA--RPFITHHNALDIDLY-- 223
Query: 294 QSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK---KH 350
L +P+L+ + I G F RV+E G FR E T RH EFT +E
Sbjct: 224 ----LRIAPELYLKRLIVGGFERVYEIGRNFRNEGIDT-RHNPEFT----MLEFYQAYAD 274
Query: 351 YSEVMDIVDRLFVTIFDGLNN 371
Y+++MD+ + L + +
Sbjct: 275 YNDMMDLTEELIRHLAQAVLG 295
|
Length = 491 |
| >gnl|CDD|216440 pfam01336, tRNA_anti, OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Score = 41.1 bits (97), Expect = 5e-05
Identities = 18/85 (21%), Positives = 38/85 (44%), Gaps = 12/85 (14%)
Query: 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166
V + GRV + R G K+AF+ +R+ ++Q + +E + + L +V V
Sbjct: 1 VTVAGRVTSVRRSGGKVAFLTLRDGTGSIQVVLF------KEEAEKLAKKLKEGDVVLVT 54
Query: 167 GVVSVPDVEIKGATQQVEVQIKKLY 191
G V ++E+ ++++
Sbjct: 55 GKVKKRP------GGELELVVEEIE 73
|
This family contains OB-fold domains that bind to nucleic acids. The family includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl -tRNA synthetases (See pfam00152). Aminoacyl-tRNA synthetases catalyze the addition of an amino acid to the appropriate tRNA molecule EC:6.1.1.-. This family also includes part of RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family. This domain is also found at the C-terminus of bacterial DNA polymerase III alpha chain. Length = 75 |
| >gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 5e-04
Identities = 55/242 (22%), Positives = 85/242 (35%), Gaps = 55/242 (22%)
Query: 130 ERVSTVQCLATVKPDSVSKEM----VRFVRSLSNES--IVDVIGVVSVPDVEIKGATQQV 183
E + V+ P K M VR + L N + G VP + + +
Sbjct: 88 EDKTQVKVKVVSAPTKKKKAMPKSVVRAPKPLENPVPAQAESSGSKPVPSIPVSTPEVKA 147
Query: 184 E------VQIKKL-YCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRV 236
Q +L +S K + E E E E S+ L ++ ++ R
Sbjct: 148 PAPALTPSQKDRLETLLSPKDKISLNSEKPKFKELESELVSRRKNDLKQMYEEDR----- 202
Query: 237 IDIRTLANQGIFRIQSQVGNIFR---QFLLSENFVEIHTPKLIAGSS----------EGG 283
+ +G + R +F + F+EI +P LI E
Sbjct: 203 --------------EDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELS 248
Query: 284 SAVFRLDYKGQSACLAQ--SPQL----HKQMSICGDFGRVFETGPVFRAEDSYTHRHLCE 337
+FR+D ++ CL +P L K I D ++FE GP +R E S HL E
Sbjct: 249 KQIFRVD---KNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKE-SDGKEHLEE 304
Query: 338 FT 339
FT
Sbjct: 305 FT 306
|
Length = 417 |
| >gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Score = 40.2 bits (94), Expect = 0.002
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 3/111 (2%)
Query: 274 KLIAGSSEGGSAV-FRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTH 332
KL G+S + F D+ + L S +LH + C G V+ GP FRA+ +
Sbjct: 349 KLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYACA-LGNVYTFGPRFRADRIDSA 407
Query: 333 RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQ 383
RHL E ++VEM + + M+ + F + + C ++++ V+K+
Sbjct: 408 RHLAEMWMVEVEMAFSE-LEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKR 457
|
Length = 633 |
| >gnl|CDD|173607 PTZ00417, PTZ00417, lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.002
Identities = 70/324 (21%), Positives = 127/324 (39%), Gaps = 50/324 (15%)
Query: 27 KKEAAKKAKEERRKEAEAAASAA------SALSIEEEGPLANNYGDVPLQELQSVNDPQ- 79
KK + +A ++++KE EA S E++ N Y P + +++ P+
Sbjct: 61 KKVRSVQASKDKKKEEEAEVDPRLYYENRSKFIQEQKAKGINPY---PHKFERTITVPEF 117
Query: 80 TGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLA 139
K+ + +G L+D + + GR+ G KL F + + +Q LA
Sbjct: 118 VEKYQDLASGEH----------LEDTILNVTGRIMRVSASGQKLRFFDLVGDGAKIQVLA 167
Query: 140 TVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT 199
+K F D++G+V P KG ++ + K+ +S
Sbjct: 168 NFAFHDHTKS--NFAECYDKIRRGDIVGIVGFPGKSKKG---ELSIFPKETIILSPCLHM 222
Query: 200 -PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLAN-QGIFRIQSQVGNI 257
P+ K G++ + + R R +D+ + + F ++++ N
Sbjct: 223 LPM----------------KYGLK----DTEIRYRQRYLDLMINESTRSTFITRTKIINY 262
Query: 258 FRQFLLSENFVEIHTP--KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFG 315
R FL F+E+ TP L+AG + + + L + +L +M I G
Sbjct: 263 LRNFLNDRGFIEVETPTMNLVAGGANARPFITHHNDLDLDLYLRIATELPLKMLIVGGID 322
Query: 316 RVFETGPVFRAEDSYTHRHLCEFT 339
+V+E G VFR E + H EFT
Sbjct: 323 KVYEIGKVFRNE-GIDNTHNPEFT 345
|
Length = 585 |
| >gnl|CDD|235095 PRK02983, lysS, lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 0.003
Identities = 62/263 (23%), Positives = 99/263 (37%), Gaps = 53/263 (20%)
Query: 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVR 152
TV AL + +EV + GRV R G + F +R+ +Q L +
Sbjct: 641 TVAEAL-DAPTGEEVSVSGRVLRIRDYG-GVLFADLRDWSGELQVLLD-ASRLEQGSLAD 697
Query: 153 FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAE 212
F ++ +V+V G + + T + V
Sbjct: 698 FRAAVDLGDLVEVTGTM----GTSRNGTLSLLVT-------------------------S 728
Query: 213 IEKASKEGVQLPR-----VNQDTRLNNRVID--IRTLANQGIFRIQSQVGNIFRQFLLSE 265
A K LP + + R+ R +D + A + R +S V R+ L++
Sbjct: 729 WRLAGKCLRPLPDKWKGLTDPEARVRQRYLDLAVNPEARD-LLRARSAVVRAVRETLVAR 787
Query: 266 NFVEIHTPKL--IAGSSEGGSA---VFRLDYKGQSACLAQSPQLH-KQMSICGDFGRVFE 319
F+E+ TP L + G G +A V ++ L +P+L+ K++ + G RVFE
Sbjct: 788 GFLEVETPILQQVHG---GANARPFVTHINAYDMDLYLRIAPELYLKRLCV-GGVERVFE 843
Query: 320 TGPVFRAED-SYTHRHLCEFTGL 341
G FR E TH EFT L
Sbjct: 844 LGRNFRNEGVDATHNP--EFTLL 864
|
Length = 1094 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 435 | |||
| KOG0556 | 533 | consensus Aspartyl-tRNA synthetase [Translation, r | 100.0 | |
| PLN02850 | 530 | aspartate-tRNA ligase | 100.0 | |
| PTZ00401 | 550 | aspartyl-tRNA synthetase; Provisional | 100.0 | |
| KOG1885 | 560 | consensus Lysyl-tRNA synthetase (class II) [Transl | 100.0 | |
| COG0017 | 435 | AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl | 100.0 | |
| PLN02502 | 553 | lysyl-tRNA synthetase | 100.0 | |
| TIGR00458 | 428 | aspS_arch aspartyl-tRNA synthetase, archaeal type. | 100.0 | |
| PRK05159 | 437 | aspC aspartyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02221 | 572 | asparaginyl-tRNA synthetase | 100.0 | |
| PRK03932 | 450 | asnC asparaginyl-tRNA synthetase; Validated | 100.0 | |
| TIGR00499 | 496 | lysS_bact lysyl-tRNA synthetase, eukaryotic and no | 100.0 | |
| TIGR00457 | 453 | asnS asparaginyl-tRNA synthetase. In a multiple se | 100.0 | |
| PTZ00417 | 585 | lysine-tRNA ligase; Provisional | 100.0 | |
| PRK12445 | 505 | lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PRK00484 | 491 | lysS lysyl-tRNA synthetase; Reviewed | 100.0 | |
| PLN02603 | 565 | asparaginyl-tRNA synthetase | 100.0 | |
| PTZ00425 | 586 | asparagine-tRNA ligase; Provisional | 100.0 | |
| PLN02532 | 633 | asparagine-tRNA synthetase | 100.0 | |
| PTZ00385 | 659 | lysyl-tRNA synthetase; Provisional | 100.0 | |
| PRK02983 | 1094 | lysS lysyl-tRNA synthetase; Provisional | 100.0 | |
| PLN02903 | 652 | aminoacyl-tRNA ligase | 100.0 | |
| TIGR00459 | 583 | aspS_bact aspartyl-tRNA synthetase, bacterial type | 100.0 | |
| COG1190 | 502 | LysU Lysyl-tRNA synthetase (class II) [Translation | 100.0 | |
| PRK00476 | 588 | aspS aspartyl-tRNA synthetase; Validated | 100.0 | |
| PRK12820 | 706 | bifunctional aspartyl-tRNA synthetase/aspartyl/glu | 100.0 | |
| COG0173 | 585 | AspS Aspartyl-tRNA synthetase [Translation, riboso | 100.0 | |
| KOG0554 | 446 | consensus Asparaginyl-tRNA synthetase (mitochondri | 100.0 | |
| KOG0555 | 545 | consensus Asparaginyl-tRNA synthetase [Translation | 100.0 | |
| cd00776 | 322 | AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class | 100.0 | |
| KOG2411 | 628 | consensus Aspartyl-tRNA synthetase, mitochondrial | 100.0 | |
| PRK06462 | 335 | asparagine synthetase A; Reviewed | 100.0 | |
| PF00152 | 335 | tRNA-synt_2: tRNA synthetases class II (D, K and N | 100.0 | |
| TIGR00462 | 304 | genX lysyl-tRNA synthetase-like protein GenX. Many | 100.0 | |
| cd00775 | 329 | LysRS_core Lys_tRNA synthetase (LysRS) class II co | 100.0 | |
| cd00669 | 269 | Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl | 100.0 | |
| cd00777 | 280 | AspRS_core Asp tRNA synthetase (aspRS) class II co | 100.0 | |
| PRK09350 | 306 | poxB regulator PoxA; Provisional | 100.0 | |
| COG2269 | 322 | Truncated, possibly inactive, lysyl-tRNA synthetas | 99.94 | |
| cd04317 | 135 | EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod | 99.91 | |
| cd04322 | 108 | LysRS_N LysRS_N: N-terminal, anticodon recognition | 99.88 | |
| cd04320 | 102 | AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r | 99.84 | |
| cd04316 | 108 | ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a | 99.81 | |
| cd04319 | 103 | PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod | 99.81 | |
| cd04100 | 85 | Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant | 99.68 | |
| cd04323 | 84 | AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a | 99.64 | |
| cd04321 | 86 | ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a | 99.58 | |
| cd04318 | 82 | EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod | 99.56 | |
| PRK09537 | 417 | pylS pyrolysyl-tRNA synthetase; Reviewed | 99.44 | |
| cd00768 | 211 | class_II_aaRS-like_core Class II tRNA amino-acyl s | 99.17 | |
| PF01336 | 75 | tRNA_anti-codon: OB-fold nucleic acid binding doma | 98.99 | |
| TIGR02367 | 453 | PylS pyrrolysyl-tRNA synthetase. PylS is the archa | 98.95 | |
| cd00496 | 218 | PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe | 98.58 | |
| PF01409 | 247 | tRNA-synt_2d: tRNA synthetases class II core domai | 98.51 | |
| cd00773 | 261 | HisRS-like_core Class II Histidinyl-tRNA synthetas | 98.42 | |
| PF00587 | 173 | tRNA-synt_2b: tRNA synthetase class II core domain | 98.36 | |
| PRK00488 | 339 | pheS phenylalanyl-tRNA synthetase subunit alpha; V | 98.3 | |
| TIGR00468 | 294 | pheS phenylalanyl-tRNA synthetase, alpha subunit. | 98.22 | |
| PRK00037 | 412 | hisS histidyl-tRNA synthetase; Reviewed | 98.19 | |
| cd00670 | 235 | Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t | 98.19 | |
| TIGR00442 | 397 | hisS histidyl-tRNA synthetase. This model finds a | 98.12 | |
| PRK04172 | 489 | pheS phenylalanyl-tRNA synthetase subunit alpha; P | 98.01 | |
| PTZ00326 | 494 | phenylalanyl-tRNA synthetase alpha chain; Provisio | 98.0 | |
| cd00778 | 261 | ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) | 97.98 | |
| cd00772 | 264 | ProRS_core Prolyl-tRNA synthetase (ProRS) class II | 97.97 | |
| cd00771 | 298 | ThrRS_core Threonyl-tRNA synthetase (ThrRS) class | 97.94 | |
| PLN02853 | 492 | Probable phenylalanyl-tRNA synthetase alpha chain | 97.91 | |
| TIGR00409 | 568 | proS_fam_II prolyl-tRNA synthetase, family II. Pro | 97.89 | |
| TIGR00443 | 314 | hisZ_biosyn_reg ATP phosphoribosyltransferase, reg | 97.88 | |
| COG0016 | 335 | PheS Phenylalanyl-tRNA synthetase alpha subunit [T | 97.87 | |
| cd00779 | 255 | ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla | 97.87 | |
| PRK09194 | 565 | prolyl-tRNA synthetase; Provisional | 97.86 | |
| PF13393 | 311 | tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI | 97.85 | |
| cd00774 | 254 | GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik | 97.85 | |
| cd00770 | 297 | SerRS_core Seryl-tRNA synthetase (SerRS) class II | 97.83 | |
| PRK12293 | 281 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.78 | |
| PLN02908 | 686 | threonyl-tRNA synthetase | 97.76 | |
| PLN02788 | 402 | phenylalanine-tRNA synthetase | 97.75 | |
| PRK12292 | 391 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.74 | |
| PRK12305 | 575 | thrS threonyl-tRNA synthetase; Reviewed | 97.72 | |
| TIGR00414 | 418 | serS seryl-tRNA synthetase. This model represents | 97.72 | |
| PRK05431 | 425 | seryl-tRNA synthetase; Provisional | 97.68 | |
| PRK00413 | 638 | thrS threonyl-tRNA synthetase; Reviewed | 97.67 | |
| PLN02972 | 763 | Histidyl-tRNA synthetase | 97.66 | |
| CHL00201 | 430 | syh histidine-tRNA synthetase; Provisional | 97.63 | |
| PRK12420 | 423 | histidyl-tRNA synthetase; Provisional | 97.62 | |
| TIGR00418 | 563 | thrS threonyl-tRNA synthetase. This model represen | 97.62 | |
| PRK12444 | 639 | threonyl-tRNA synthetase; Reviewed | 97.6 | |
| PRK14799 | 545 | thrS threonyl-tRNA synthetase; Provisional | 97.58 | |
| PRK08661 | 477 | prolyl-tRNA synthetase; Provisional | 97.57 | |
| PRK12421 | 392 | ATP phosphoribosyltransferase regulatory subunit; | 97.51 | |
| PLN02530 | 487 | histidine-tRNA ligase | 97.49 | |
| PRK12325 | 439 | prolyl-tRNA synthetase; Provisional | 97.48 | |
| PRK03991 | 613 | threonyl-tRNA synthetase; Validated | 97.47 | |
| TIGR00408 | 472 | proS_fam_I prolyl-tRNA synthetase, family I. Proly | 97.47 | |
| PRK12295 | 373 | hisZ ATP phosphoribosyltransferase regulatory subu | 97.26 | |
| PLN02837 | 614 | threonine-tRNA ligase | 97.1 | |
| COG0124 | 429 | HisS Histidyl-tRNA synthetase [Translation, riboso | 97.1 | |
| PLN02678 | 448 | seryl-tRNA synthetase | 97.02 | |
| cd04489 | 78 | ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB fol | 97.02 | |
| KOG2784 | 483 | consensus Phenylalanyl-tRNA synthetase, beta subun | 96.97 | |
| PF13742 | 99 | tRNA_anti_2: OB-fold nucleic acid binding domain | 96.71 | |
| PRK04173 | 456 | glycyl-tRNA synthetase; Provisional | 96.63 | |
| cd04487 | 73 | RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f | 96.55 | |
| COG0442 | 500 | ProS Prolyl-tRNA synthetase [Translation, ribosoma | 96.51 | |
| PRK12294 | 272 | hisZ ATP phosphoribosyltransferase regulatory subu | 96.45 | |
| PLN02320 | 502 | seryl-tRNA synthetase | 96.43 | |
| TIGR00470 | 533 | sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam | 96.39 | |
| cd04485 | 84 | DnaE_OBF DnaE_OBF: A subfamily of OB folds corresp | 96.28 | |
| PRK07373 | 449 | DNA polymerase III subunit alpha; Reviewed | 96.17 | |
| COG1107 | 715 | Archaea-specific RecJ-like exonuclease, contains D | 96.1 | |
| cd03524 | 75 | RPA2_OBF_family RPA2_OBF_family: A family of oligo | 96.0 | |
| TIGR00415 | 520 | serS_MJ seryl-tRNA synthetase, Methanococcus janna | 95.88 | |
| PRK00960 | 517 | seryl-tRNA synthetase; Provisional | 95.85 | |
| cd04478 | 95 | RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds cor | 95.79 | |
| cd04482 | 91 | RPA2_OBF_like RPA2_OBF_like: A subgroup of unchara | 95.52 | |
| COG0172 | 429 | SerS Seryl-tRNA synthetase [Translation, ribosomal | 95.39 | |
| cd04492 | 83 | YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol | 95.1 | |
| cd04474 | 104 | RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds cor | 94.99 | |
| KOG2324 | 457 | consensus Prolyl-tRNA synthetase [Translation, rib | 94.89 | |
| PRK07374 | 1170 | dnaE DNA polymerase III subunit alpha; Validated | 94.79 | |
| cd04483 | 92 | hOBFC1_like hOBFC1_like: A subfamily of OB folds s | 94.66 | |
| PRK05673 | 1135 | dnaE DNA polymerase III subunit alpha; Validated | 94.38 | |
| PF04076 | 103 | BOF: Bacterial OB fold (BOF) protein; InterPro: IP | 94.19 | |
| COG0423 | 558 | GRS1 Glycyl-tRNA synthetase (class II) [Translatio | 94.18 | |
| PRK06920 | 1107 | dnaE DNA polymerase III DnaE; Reviewed | 93.98 | |
| PRK09616 | 552 | pheT phenylalanyl-tRNA synthetase subunit beta; Re | 93.95 | |
| cd04490 | 79 | PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds | 93.92 | |
| PRK05672 | 1046 | dnaE2 error-prone DNA polymerase; Validated | 93.79 | |
| PRK06826 | 1151 | dnaE DNA polymerase III DnaE; Reviewed | 93.67 | |
| COG0441 | 589 | ThrS Threonyl-tRNA synthetase [Translation, riboso | 93.53 | |
| PRK07279 | 1034 | dnaE DNA polymerase III DnaE; Reviewed | 93.06 | |
| TIGR00156 | 126 | conserved hypothetical protein TIGR00156. As of th | 93.0 | |
| PF10451 | 256 | Stn1: Telomere regulation protein Stn1; InterPro: | 92.61 | |
| TIGR00389 | 551 | glyS_dimeric glycyl-tRNA synthetase, dimeric type. | 92.47 | |
| TIGR00469 | 460 | pheS_mito phenylalanyl-tRNA synthetase, mitochondr | 92.45 | |
| PRK10053 | 130 | hypothetical protein; Provisional | 92.09 | |
| COG1570 | 440 | XseA Exonuclease VII, large subunit [DNA replicati | 91.97 | |
| COG3111 | 128 | Periplasmic protein with OB-fold [Function unknown | 91.84 | |
| cd00769 | 198 | PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR | 91.57 | |
| cd04479 | 101 | RPA3 RPA3: A subfamily of OB folds similar to huma | 91.45 | |
| COG3705 | 390 | HisZ ATP phosphoribosyltransferase involved in his | 91.43 | |
| TIGR00617 | 608 | rpa1 replication factor-a protein 1 (rpa1). This f | 91.34 | |
| PRK10917 | 681 | ATP-dependent DNA helicase RecG; Provisional | 90.93 | |
| KOG1936 | 518 | consensus Histidyl-tRNA synthetase [Translation, r | 90.82 | |
| PF08661 | 109 | Rep_fac-A_3: Replication factor A protein 3; Inter | 89.78 | |
| cd04488 | 75 | RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f | 89.65 | |
| COG4085 | 204 | Predicted RNA-binding protein, contains TRAM domai | 89.59 | |
| PRK07459 | 121 | single-stranded DNA-binding protein; Provisional | 89.43 | |
| PRK15491 | 374 | replication factor A; Provisional | 88.6 | |
| TIGR00237 | 432 | xseA exodeoxyribonuclease VII, large subunit. This | 88.57 | |
| KOG2509 | 455 | consensus Seryl-tRNA synthetase [Translation, ribo | 88.36 | |
| cd04484 | 82 | polC_OBF polC_OBF: A subfamily of OB folds corresp | 88.19 | |
| PRK06863 | 168 | single-stranded DNA-binding protein; Provisional | 87.99 | |
| PRK00286 | 438 | xseA exodeoxyribonuclease VII large subunit; Revie | 87.7 | |
| PF12869 | 144 | tRNA_anti-like: tRNA_anti-like; InterPro: IPR02442 | 87.58 | |
| PF00436 | 104 | SSB: Single-strand binding protein family; InterPr | 87.2 | |
| PRK08486 | 182 | single-stranded DNA-binding protein; Provisional | 86.7 | |
| PRK07275 | 162 | single-stranded DNA-binding protein; Provisional | 85.93 | |
| PF03590 | 244 | AsnA: Aspartate-ammonia ligase; InterPro: IPR00461 | 85.42 | |
| PRK06461 | 129 | single-stranded DNA-binding protein; Reviewed | 84.92 | |
| PRK06751 | 173 | single-stranded DNA-binding protein; Provisional | 84.86 | |
| TIGR00643 | 630 | recG ATP-dependent DNA helicase RecG. | 84.53 | |
| PRK02801 | 101 | primosomal replication protein N; Provisional | 83.95 | |
| PRK06293 | 161 | single-stranded DNA-binding protein; Provisional | 83.81 | |
| PRK07274 | 131 | single-stranded DNA-binding protein; Provisional | 83.72 | |
| PRK14699 | 484 | replication factor A; Provisional | 83.18 | |
| COG1200 | 677 | RecG RecG-like helicase [DNA replication, recombin | 82.82 | |
| PRK06752 | 112 | single-stranded DNA-binding protein; Validated | 82.42 | |
| KOG3108 | 265 | consensus Single-stranded DNA-binding replication | 82.36 | |
| COG5235 | 258 | RFA2 Single-stranded DNA-binding replication prote | 82.13 | |
| KOG1035 | 1351 | consensus eIF-2alpha kinase GCN2 [Translation, rib | 81.93 | |
| PRK13732 | 175 | single-stranded DNA-binding protein; Provisional | 81.93 | |
| PRK13480 | 314 | 3'-5' exoribonuclease YhaM; Provisional | 81.83 | |
| TIGR00621 | 164 | ssb single stranded DNA-binding protein (ssb). Thi | 81.7 | |
| PRK12366 | 637 | replication factor A; Reviewed | 81.62 | |
| PRK07135 | 973 | dnaE DNA polymerase III DnaE; Validated | 80.8 |
| >KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-107 Score=806.75 Aligned_cols=407 Identities=56% Similarity=0.823 Sum_probs=382.5
Q ss_pred ccCCCccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcccCChhhhhccCCCCCCcccccccCcce
Q 013865 13 EVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREW 92 (435)
Q Consensus 13 ~~~~~~~~~sk~~lkk~~k~~~k~~kka~~~~~~~~~~~~~~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~~ 92 (435)
..+++|+ +|||++||.+|+++|..+|++++..+. ++..++++|.++++||++++.++|+. +++.|
T Consensus 6 ~~gE~gk-~SKK~~kk~a~~~eK~~~k~e~~~~~~--~a~~~~~ed~~~~~yg~~~l~~s~~~------------~~~~~ 70 (533)
T KOG0556|consen 6 ALGEDGK-LSKKALKKLAKKLEKLRKKQEREETAA--KAREAEAEDYAKERYGDLSLIQSQSK------------EGREL 70 (533)
T ss_pred hcccccc-ccHHHHHHHHHHHHHHHhhhhhhhhhh--hhhhhhhhhHHhhhcCcccccccccc------------cccce
Confidence 3456677 999999999999999999988654222 22335678889999999999988873 77899
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCC-CCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPD-SVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~-~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
+.+.+|+.+..|+.||||||||+.|.+| |+||++||+++.+|||++..+.. .+|++|++|+++|++||||+|.|+|++
T Consensus 71 ~~v~dl~~~~~~~~V~vRgrVhtsr~~G-K~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k 149 (533)
T KOG0556|consen 71 TDVSDLDESNDGSEVLVRGRVHTSRLKG-KLCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVK 149 (533)
T ss_pred eehhhhhhhcCCceEEEEEEEeeccccc-eEEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEec
Confidence 9999999999999999999999999999 99999999999999999988765 389999999999999999999999999
Q ss_pred CCcccCCCc-eeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 172 PDVEIKGAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 172 ~~~~~~~~t-~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
++.+++||| +.+||+|.+|+|||.+ +.||++++||++++.+.+++.+.+..+.++++|||||||.||||||++|+|||
T Consensus 150 ~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLRtptnqAiFr 229 (533)
T KOG0556|consen 150 VKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLRTPTNQAIFR 229 (533)
T ss_pred CCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecccccchheee
Confidence 999999998 6699999999999999 99999999999987666666666667889999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCC
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s 329 (435)
+++.||.+||+||..+||+|||||+|+++++|||+++|.|+||+.++||+|||||||||+|||||+|||+||||||||+|
T Consensus 230 iq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdS 309 (533)
T KOG0556|consen 230 IQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRVSYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDS 309 (533)
T ss_pred hHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEEEeccCcchhhcChHHHHHHHHhcchhheeeecceeecccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHH
Q 013865 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD 409 (435)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~ 409 (435)
||+|||+||++||+||+|..||||+|+++.+|+.+||+.|.++|+++|+.++.+||+++++|..|..|+||.||++||++
T Consensus 310 nthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fkf~~~~lrl~~~e~v~mLre 389 (533)
T KOG0556|consen 310 NTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFKFLEPPLRLTFKEGVAMLRE 389 (533)
T ss_pred chhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCceEeehHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCcHHHHHHHHHhhcC
Q 013865 410 AGVEIDPLGDLNTESERKLGQLVLEK 435 (435)
Q Consensus 410 ~g~~~~~~~dl~te~E~~L~~~vkek 435 (435)
+|+++++.+||||+.||+||++|+||
T Consensus 390 aGvE~g~~dDlsTe~Ek~LG~lV~ek 415 (533)
T KOG0556|consen 390 AGVEMGDEDDLSTESEKKLGQLVREK 415 (533)
T ss_pred cCcccCCccccCChhHHHHHHHHHHH
Confidence 99999999999999999999999986
|
|
| >PLN02850 aspartate-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-93 Score=752.30 Aligned_cols=407 Identities=72% Similarity=1.074 Sum_probs=365.1
Q ss_pred ccCCCccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcccCChhhhhccCCCCCCcccccccCcce
Q 013865 13 EVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREW 92 (435)
Q Consensus 13 ~~~~~~~~~sk~~lkk~~k~~~k~~kka~~~~~~~~~~~~~~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~~ 92 (435)
.++..++.+|||++||++|+++|++++++++++. ++ ...++|..+++||++|+.++++. .+.++|
T Consensus 5 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~yg~~~~~~~~~~-----------~~~~~~ 69 (530)
T PLN02850 5 AVEESGEKISKKAAKKAAAKAEKLRREATAKAAA-AS---LEDEDDPLASNYGDVPLEELQSK-----------VTGREW 69 (530)
T ss_pred cccccCCCcCHHHHHHHHHHHHHHHHHHHHHHHH-hh---hccccchhhccCCcccccccccc-----------cCCceE
Confidence 3455677799999999999999998876633211 11 12356888999999999876641 255789
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|++|+..+.|++|+|+||||++|.+| +++|++|||++++||||+..+...++++|++|+..|+.||+|.|+|+|+.+
T Consensus 70 ~~i~~l~~~~~g~~V~v~Grv~~~R~~g-k~~Fl~Lrd~~~~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~ 148 (530)
T PLN02850 70 TDVSDLGEELAGSEVLIRGRVHTIRGKG-KSAFLVLRQSGFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVP 148 (530)
T ss_pred eEhhhcchhhCCCEEEEEEEEEEEccCC-CeEEEEEEeCCcCEEEEEECCccccCHHHHHHHhCCCCCCEEEEEEEEEcc
Confidence 9999999999999999999999999999 699999999999999999876544789999999999999999999999998
Q ss_pred CcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHH
Q 013865 173 DVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~r 251 (435)
+.+++++++++||++++|+|||+| ++||++++|+++++.+.++....+..++++++++||+|||||||++.+++|||+|
T Consensus 149 ~~~~~~~t~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~rl~~R~LdlR~~~~qaifrir 228 (530)
T PLN02850 149 KKPVKGTTQQVEIQVRKIYCVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRIQ 228 (530)
T ss_pred CcCCCCCCccEEEEEeEEEEEeCCCCCCCCChhhcccccccccccccccccccccChhhhhcchhhhhcCHHHHHHHHHH
Confidence 888889999999999999999999 9999999998876543322111233467789999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCC
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t 331 (435)
|.|+++||+||.++||+||+||+|+++++|||+++|.|+|||+++||+|||||||||++++|++|||+||||||||+|+|
T Consensus 229 s~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE~s~t 308 (530)
T PLN02850 229 SQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRLDYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAEDSFT 308 (530)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeeeccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcC
Q 013865 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 411 (435)
Q Consensus 332 ~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~g 411 (435)
+|||||||||||||+|.++|+|+|+++|+||++++..+.++|..+|+.++.++|++.+.+..+++|+||.||++||++.|
T Consensus 309 ~RHl~EFt~Le~Em~~~~~y~evm~~~E~ll~~i~~~l~~~~~~el~~i~~~~~~~~~~~~~~~~rit~~ea~~~L~~~g 388 (530)
T PLN02850 309 HRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLNERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLKEAG 388 (530)
T ss_pred CccchhhccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhcccCCcchhhhcCCcccCCHHHHHHHHHHcC
Confidence 99999999999999998889999999999999999999999999999998888888888888999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhcC
Q 013865 412 VEIDPLGDLNTESERKLGQLVLEK 435 (435)
Q Consensus 412 ~~~~~~~dl~te~E~~L~~~vkek 435 (435)
+++++++||++++|+.||++|+++
T Consensus 389 ~~~~~~~dl~~~~E~~Lg~~v~~~ 412 (530)
T PLN02850 389 VEVDPLGDLNTESERKLGQLVKEK 412 (530)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHh
Confidence 998889999999999999999864
|
|
| >PTZ00401 aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-87 Score=711.88 Aligned_cols=390 Identities=43% Similarity=0.680 Sum_probs=342.7
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCCCCcccCChhhhhccCCCCCCcccccccCcceEEecc
Q 013865 18 SQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGA 97 (435)
Q Consensus 18 ~~~~sk~~lkk~~k~~~k~~kka~~~~~~~~~~~~~~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~ 97 (435)
....+|+++||++|+++|++++++++++...++ .++|..+++||.+|+.|++. .+.++|+.|++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~g~~~~~~~~~------------~~~~~~~~i~~ 70 (550)
T PTZ00401 7 DAGAPAVEKKQSDKEARKAARLAEEKARAAEKA----ALVEKYKDVFGAAPMVQSTT------------YKSRTFIPVAV 70 (550)
T ss_pred ccCcchhhHHHHHHHHHhHHHHHHHHHHHHhhh----hccchhhccCCccccccccc------------cCCCceEEHHH
Confidence 456789999999999999988887543222211 15688899999999987654 35678999999
Q ss_pred ccCCC-CCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCccc
Q 013865 98 LNGSL-KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (435)
Q Consensus 98 l~~~~-~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~ 176 (435)
|+..+ .|++|+|+|||+++|.+| |++|++|||++++||||+..+. .++++|++|+..|+.||+|+|+|+|+.++.++
T Consensus 71 l~~~~~~g~~V~v~Grv~~~R~~G-k~~Fl~LRd~~~~iQ~v~~~~~-~~~~~~~~~~~~l~~esiV~V~G~v~~~~~~~ 148 (550)
T PTZ00401 71 LSKPELVDKTVLIRARVSTTRKKG-KMAFMVLRDGSDSVQAMAAVEG-DVPKEMIDFIGQIPTESIVDVEATVCKVEQPI 148 (550)
T ss_pred CCccccCCCEEEEEEEEEEEecCC-CeEEEEEEeCCcCEEEEEECCC-ccCHHHHHHHhcCCCCCEEEEEEEEEecCccC
Confidence 98777 899999999999999999 7899999999999999997643 26889999999999999999999999887777
Q ss_pred CCCc-eeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHH
Q 013865 177 KGAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 254 (435)
Q Consensus 177 ~~~t-~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i 254 (435)
++++ +++||++++|+|||+| .+||++++|+++++. .....++++|||+|||||||++.++++|++||.|
T Consensus 149 ~~~~~~~~El~v~~i~vls~a~~~lP~~~~d~~~~~~---------~~~~~~~~dtrl~~R~LdlR~~~~~~i~r~rs~i 219 (550)
T PTZ00401 149 TSTSHSDIELKVKKIHTVTESLRTLPFTLEDASRKES---------DEGAKVNFDTRLNSRWMDLRTPASGAIFRLQSRV 219 (550)
T ss_pred CCCCCccEEEEeeEEEEEeCCCCCCCCCccccccccc---------ccccccChhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence 6666 6799999999999999 899999998876432 1234578999999999999999999999999999
Q ss_pred HHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCcc
Q 013865 255 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRH 334 (435)
Q Consensus 255 ~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rH 334 (435)
+++||+||.++||+||+||+|+++++|||+++|.++|||.++||+|||||||||+++||++|||+||||||||+++|+||
T Consensus 220 ~~~~R~fl~~~gFiEV~TP~L~~~~~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FRaE~s~T~RH 299 (550)
T PTZ00401 220 CQYFRQFLIDSDFCEIHSPKIINAPSEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFRSENSNTHRH 299 (550)
T ss_pred HHHHHHHHHHCCCEEEeCCccccCCCCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEeCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCC----------------------
Q 013865 335 LCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYK---------------------- 392 (435)
Q Consensus 335 l~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~---------------------- 392 (435)
|||||||||||+|.++|+|+|+++|+||.+++..+.++ ..+++.++.++|++++.|.
T Consensus 300 l~EFt~Le~E~~~~~~y~evm~~~e~l~~~i~~~l~~~-~~ei~~~~~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 378 (550)
T PTZ00401 300 LTEFVGLDVEMRINEHYYEVLDLAESLFNYIFERLATH-TKELKAVCQQYPFEPLVWKLTPERMKELGVGVISEGVEPTD 378 (550)
T ss_pred ccchhhhhhhhHhcCCHHHHHHHHHHHHHHHHHHHHcc-chhhhhhccccccccccccccHHHHHhcCCCcccccccchH
Confidence 99999999999998789999999999999999999876 4567667666665543221
Q ss_pred ----------CCCceeeHHHHHHHHHHcC-CCCCCCCCCCcHHHHHHHHHhhcC
Q 013865 393 ----------PKTLRLTFEEGVQMLKDAG-VEIDPLGDLNTESERKLGQLVLEK 435 (435)
Q Consensus 393 ----------~p~~rit~~eai~lL~~~g-~~~~~~~dl~te~E~~L~~~vkek 435 (435)
.||+||+|.||++||++.| .+++|++||++++|+.|+++|+++
T Consensus 379 ~l~~~~~~~~~~~~rl~y~eai~lL~~~~~~~~~~~~dl~~~~E~~L~~~v~~~ 432 (550)
T PTZ00401 379 KYQARVHNMDSRMLRINYMHCIELLNTVLEEKMAPTDDINTTNEKLLGKLVKER 432 (550)
T ss_pred HHHHHHHhcCCCcccccHHHHHHHHHHhcccCCCcccccCchHHHHHHHHHHHh
Confidence 2489999999999999986 567888999999999999999864
|
|
| >KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-80 Score=618.86 Aligned_cols=381 Identities=23% Similarity=0.344 Sum_probs=323.1
Q ss_pred ccccChhHHHHHHHHHHHHHHHHHHHHHHH------HHhhccccccCCCCCCcccCChhhhhcc----CCCCCCcccccc
Q 013865 18 SQSISKKAAKKEAAKKAKEERRKEAEAAAS------AASALSIEEEGPLANNYGDVPLQELQSV----NDPQTGKWSEAV 87 (435)
Q Consensus 18 ~~~~sk~~lkk~~k~~~k~~kka~~~~~~~------~~~~~~~~~~d~~~~~Yg~~~~~~~~~~----~~~~p~~~~~~~ 87 (435)
.+++||++|||+.++.+|+..++++++... .+......+++.++.+|+++|.+.++++ .|||||||++++
T Consensus 5 s~~~sk~~lkrr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~qy~~~R~r~i~~l~~s~~~Pyphkf~vs~ 84 (560)
T KOG1885|consen 5 SEMLSKNELKRRSLAKQKALEKAKKASSKAAAPSVAAAKSVSKSEETSDPEQYFKIRSRAIEELRASGLNPYPHKFHVSI 84 (560)
T ss_pred hhhhhHHHHHHhHHHhhHHHHHHHhhhhccCCCccccccccccccccCCHHHHHHHHHHHHHHHhhcCCCCCcchhhccc
Confidence 478999999999999888776665332111 1111345677889999999999988765 499999999999
Q ss_pred cCcceE-Eeccc--cCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEE
Q 013865 88 NGREWT-VVGAL--NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (435)
Q Consensus 88 ~~~~~~-~i~~l--~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~ 164 (435)
+..+|. ++..+ +++..+..|+|+||||++|.+|+||+|++|++++.+||+|++.+....+.++....+.|++||||+
T Consensus 85 si~~fieky~~l~~ge~~~n~~~svaGRI~s~R~sGsKL~Fydl~~~g~klQvm~~~~~~~~~~~F~~~~~~lkrGDiig 164 (560)
T KOG1885|consen 85 SIPDFIEKYLHLATGEHLDNEIVSVAGRIHSKRESGSKLVFYDLHGDGVKLQVMANAKKITSEEDFEQLHKFLKRGDIIG 164 (560)
T ss_pred cHHHHHHHhcCcccccccccceeeeeeeEeeeeccCCceEEEEEecCCeEEEEEEehhhcCCHHHHHHHHhhhhccCEEe
Confidence 986542 22222 455667789999999999999999999999999999999999876544455666778899999999
Q ss_pred EEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccccccccc-H
Q 013865 165 VIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRT-L 242 (435)
Q Consensus 165 V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~-~ 242 (435)
|.|.+++ +.+++++|.+++|.+|||| ++||.. +++++|+|+|+++|||||+. +
T Consensus 165 ~~G~pgr------t~~gELSi~~~~~~lLspcLh~lP~~-------------------~~gLkD~EtRyrqRylDlilN~ 219 (560)
T KOG1885|consen 165 VSGYPGR------TKSGELSIIPNEIILLSPCLHMLPHE-------------------HFGLKDKETRYRKRYLDLILNP 219 (560)
T ss_pred eecCCCc------CCCceEEEeecchheecchhccCChh-------------------hcCCCcHHHHHHHHHHHHHcCH
Confidence 9997654 3457999999999999999 999942 67889999999999999987 7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCc--ceeEec--cCCCceeeccChHHHHhhhccCCCceeE
Q 013865 243 ANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRLD--YKGQSACLAQSPQLHKQMSICGDFGRVF 318 (435)
Q Consensus 243 ~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga--~~F~v~--~~~~~~~L~~Spql~lq~~i~~g~~rVf 318 (435)
.++..|++|+.|+.+||.||+++||+||+||+|+.. .||| .||.+. .++.++|||+|||||+|||++||++|||
T Consensus 220 ~~r~~f~~RakII~~iRkfld~rgFlEVETPmmn~i--aGGA~AkPFIT~hndldm~LylRiAPEL~lK~LvVGGldrVY 297 (560)
T KOG1885|consen 220 EVRDRFRIRAKIISYIRKFLDSRGFLEVETPMMNMI--AGGATAKPFITHHNDLDMDLYLRIAPELYLKMLVVGGLDRVY 297 (560)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhcCceEecchhhccc--cCccccCceeecccccCcceeeeechHHHHHHHHhccHHHHH
Confidence 899999999999999999999999999999999754 4555 499984 5889999999999999999999999999
Q ss_pred EEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCcee
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRL 398 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~ri 398 (435)
|||++||||+. +.+||||||.|||||||+| |+|+|+++|+|++++++.+.+.|+......+...+.-.++|.+||+||
T Consensus 298 EIGr~FRNEGI-DlTHNPEFTTcEfY~AYad-y~dlm~~TE~l~s~mv~~i~G~~~i~y~p~~~~~~~~eldf~~pfrri 375 (560)
T KOG1885|consen 298 EIGRQFRNEGI-DLTHNPEFTTCEFYMAYAD-YEDLMDMTEELLSGMVKNITGSYKITYHPNGPEEPELELDFTRPFRRI 375 (560)
T ss_pred HHHHHhhhcCc-ccccCCCcchHHHHHHHhh-HHHHHHHHHHHHHHHHHhhcCceeEeecCCCCCCCceeeeccCCeeee
Confidence 99999999996 8999999999999999997 999999999999999999998887655443333344458899999999
Q ss_pred eHHHHHHHHHHcCCCCCCCCCCCcHHHHHHH
Q 013865 399 TFEEGVQMLKDAGVEIDPLGDLNTESERKLG 429 (435)
Q Consensus 399 t~~eai~lL~~~g~~~~~~~dl~te~E~~L~ 429 (435)
+|.+.++ ++.|++++++++|++++-+.+-
T Consensus 376 ~mi~~L~--k~lgi~l~~~~~l~~~e~~~~L 404 (560)
T KOG1885|consen 376 EMIEELE--KELGIKLPPGSTLHTEETRELL 404 (560)
T ss_pred eHHHHHH--HHhCCCCCCccccCchhhHHHH
Confidence 9999998 8899999999999998875543
|
|
| >COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-76 Score=597.53 Aligned_cols=310 Identities=35% Similarity=0.568 Sum_probs=281.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.+.+.++.....|+.|+|+|||+++|.+| +++|+.|||+++.||||+.++. +.+++++ ++.|+.||+|.|+|+|+.
T Consensus 4 ~~~i~di~~~~~~~~V~v~GWV~~~R~~g-~i~Fi~lrDgsg~iQ~v~~~~~--~~~~~~~-~~~L~~es~v~V~G~v~~ 79 (435)
T COG0017 4 RTYIKDIKPHVGGQEVTVRGWVHNKRDLG-KIIFLVLRDGSGFIQAVVPKNK--VYEELFK-AKKLTLESSVVVTGIVKA 79 (435)
T ss_pred eeeHHhhhccCCCcEEEEEEEeeeecccC-CeEEEEEEcCCcEEEEEEECCC--CcHHHhh-hhcCCCccEEEEEEEEEc
Confidence 35566776656669999999999999999 7999999999999999998642 3577888 899999999999999998
Q ss_pred CCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHH
Q 013865 172 PDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~ 250 (435)
.++ +.|.+||++++|.|++.+ .++|++.+.+ +++++|++|||||||++..++||++
T Consensus 80 ~~~----a~~g~El~v~~i~Vl~~a~~~~Pi~~~~~-------------------~~~e~lld~rhL~lR~~~~~Av~ki 136 (435)
T COG0017 80 SPK----APQGFELQVEKIEVLGEADPPYPIDKKEH-------------------SELETLLDNRHLDLRTPKIQAVFKI 136 (435)
T ss_pred CCC----CCCCEEEEEEEEEEeeccCCCCCcCcccc-------------------cCHHHHHhchheeccccchHHHHhH
Confidence 663 347899999999999999 7899986542 2689999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCC
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~ 330 (435)
||.|++++|+||.++||+||+||+|+++++|||+++|.++||+.++||+||||||||+++++ |+|||+|||+||||+|+
T Consensus 137 rs~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v~yf~~~a~LtqS~QLyke~~~~a-l~rVf~igP~FRAE~s~ 215 (435)
T COG0017 137 RSSILRAIREFFYENGFTEVHTPIITASATEGGGELFKVDYFDKEAYLTQSPQLYKEALAAA-LERVFTIGPTFRAEKSN 215 (435)
T ss_pred HHHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEEeecCcceEEecCHHHHHHHHHHH-hCceEEecCceecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999988776 99999999999999999
Q ss_pred CCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCC--CCCCceeeHHHHHHHHH
Q 013865 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY--KPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~--~~p~~rit~~eai~lL~ 408 (435)
|.|||+||||+|.||+|++ ++|+|+++|+||+++++.+.++|..+|+.+++ +...+.. ..||+||||+||+++|+
T Consensus 216 T~RHL~EF~~ld~Emaf~~-~~d~m~l~E~~i~~i~~~v~e~~~~el~~l~~--~~~~l~~~~~~pf~ritY~eAieiL~ 292 (435)
T COG0017 216 TRRHLSEFWMLDPEMAFAD-LNDVMDLAEELIKYLFKKVLEECADELEFLGR--DNSELKRPESAPFPRITYKEAIEILE 292 (435)
T ss_pred CcchhhhHheecceeccCc-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhc--cchhhcccccCCccEEEHHHHHHHHH
Confidence 9999999999999999997 99999999999999999999999999999875 2223333 35899999999999999
Q ss_pred HcCCC-CCCCCCCCcHHHHHHHHHh
Q 013865 409 DAGVE-IDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 409 ~~g~~-~~~~~dl~te~E~~L~~~v 432 (435)
+.|.+ ++|++||++++||+|++..
T Consensus 293 ~~~~e~~~~GdDl~~e~Er~l~e~~ 317 (435)
T COG0017 293 EKGFEKVEWGDDLGTEHERYLGEEY 317 (435)
T ss_pred hcCCcccCCCCccCCHHHHHHHHHh
Confidence 99998 9999999999999999653
|
|
| >PLN02502 lysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-74 Score=610.78 Aligned_cols=371 Identities=23% Similarity=0.353 Sum_probs=299.6
Q ss_pred CCccccChhHHHHHHHHHHHHHHHHHHHHHHHHH---h-----h--ccccccCCCCCCcccCChhhhhcc----CCCCCC
Q 013865 16 SSSQSISKKAAKKEAAKKAKEERRKEAEAAASAA---S-----A--LSIEEEGPLANNYGDVPLQELQSV----NDPQTG 81 (435)
Q Consensus 16 ~~~~~~sk~~lkk~~k~~~k~~kka~~~~~~~~~---~-----~--~~~~~~d~~~~~Yg~~~~~~~~~~----~~~~p~ 81 (435)
..++++||+++||++|++++++++++++++++++ . . .+++.+++++++|..+|+..++.+ .|||||
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~~g~~pyp~ 82 (553)
T PLN02502 3 SNGEPLSKNALKKRLKAKQAEEEKAAKEEAKAAAAAAAAKGRSRKSAAADDETMDPTQYRANRLKKVEALRAKGVEPYPY 82 (553)
T ss_pred CCcccccHHHHHHHHhhhhhhHHHhhhHhhcccccccccCccccccccccccccCHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence 4678999999999999999998887654322110 0 0 111223456778988888876653 399999
Q ss_pred cccccccCcceE-Eeccc--cCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCc-HHHHHHHhcC
Q 013865 82 KWSEAVNGREWT-VVGAL--NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVS-KEMVRFVRSL 157 (435)
Q Consensus 82 ~~~~~~~~~~~~-~i~~l--~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s-~~~~k~~~~l 157 (435)
+|+++++..++. .+..+ +....|++|+|+|||+++|.+| |++|++|||+++.||||+..+....+ ..+..+...|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~GrV~~~R~~G-k~~F~~LrD~~g~iQv~~~~~~~~~~~~~~~~~~~~l 161 (553)
T PLN02502 83 KFDVTHTAPELQEKYGSLENGEELEDVSVSVAGRIMAKRAFG-KLAFYDLRDDGGKIQLYADKKRLDLDEEEFEKLHSLV 161 (553)
T ss_pred CCCCCccHHHHHHHhhccccccccCCCEEEEEEEEEEEecCC-CeEEEEEecCCccEEEEEECccccchhHHHHHHHhCC
Confidence 999998775542 23333 3456789999999999999999 89999999999999999986532111 2355555679
Q ss_pred CCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccc
Q 013865 158 SNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRV 236 (435)
Q Consensus 158 ~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~ 236 (435)
+.||+|.|+|++.+++ ++++||++++|.|||+| .+||.... +.+++++||++||
T Consensus 162 ~~gdiV~V~G~~~~t~------~gelel~~~~i~vLs~~l~plP~k~~-------------------~~~d~e~r~r~Ry 216 (553)
T PLN02502 162 DRGDIVGVTGTPGKTK------KGELSIFPTSFEVLTKCLLMLPDKYH-------------------GLTDQETRYRQRY 216 (553)
T ss_pred CCCcEEEEEEEEEecC------CCCEEEEEeEEEEEeccCCCCCcccc-------------------cccchhhhccchh
Confidence 9999999999998643 46899999999999999 89997533 3478999999999
Q ss_pred cccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHhhhccCC
Q 013865 237 IDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICGD 313 (435)
Q Consensus 237 Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~~i~~g 313 (435)
|||| ++.++++|++||.|+++||+||+++||+||+||+|+++++++++.||.+ +||+.++||+||||||+|++++||
T Consensus 217 Ldl~~n~~~~~i~r~Rs~i~~~iR~fl~~~gF~EVeTPiL~~~~gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g 296 (553)
T PLN02502 217 LDLIANPEVRDIFRTRAKIISYIRRFLDDRGFLEVETPMLNMIAGGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVGG 296 (553)
T ss_pred hhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeeeccCCCccccceeeecccCCcceeeecCHHHHHHHHHHhc
Confidence 9996 6999999999999999999999999999999999987643333458988 789999999999999999999999
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCC
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP 393 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 393 (435)
++|||+||||||||+++ .|||||||||||||+|++ |+|+|+++|+||++++..+.+.|...+ ....+++..
T Consensus 297 ~~rVfeIg~~FRnE~~~-~rH~pEFtmlE~y~a~~d-~~dlm~~~E~li~~i~~~v~~~~~~~~-------~~~~i~~~~ 367 (553)
T PLN02502 297 FERVYEIGRQFRNEGIS-TRHNPEFTTCEFYQAYAD-YNDMMELTEEMVSGMVKELTGSYKIKY-------HGIEIDFTP 367 (553)
T ss_pred cCCEEEEcCeeeCCCCC-CccccceeehhhhhhcCC-HHHHHHHHHHHHHHHHHHHhccccccc-------CCccccCCC
Confidence 99999999999999986 599999999999999995 999999999999999999987765432 233567788
Q ss_pred CCceeeHHHHHHHHHHcCCCCCCCCCCCcHHH
Q 013865 394 KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESE 425 (435)
Q Consensus 394 p~~rit~~eai~lL~~~g~~~~~~~dl~te~E 425 (435)
||+|+||.||++ +..|++++. |++.++.
T Consensus 368 p~~rit~~e~l~--~~~g~~~~~--~~~~~~~ 395 (553)
T PLN02502 368 PFRRISMISLVE--EATGIDFPA--DLKSDEA 395 (553)
T ss_pred CceeccHHHHHH--HHhCCCCCc--CCCHHHH
Confidence 999999999997 445766543 3444433
|
|
| >TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-73 Score=586.64 Aligned_cols=311 Identities=38% Similarity=0.606 Sum_probs=281.2
Q ss_pred EeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCC
Q 013865 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~ 173 (435)
.+++++..+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. +++++++++..|+.||+|.|+|+|+..+
T Consensus 2 ~~~~l~~~~~g~~v~i~G~v~~~R~~g-~~~Fi~lrd~~g~iQ~v~~~~~--~~~~~~~~~~~l~~~s~v~v~G~v~~~~ 78 (428)
T TIGR00458 2 YSADIKPEMDGQEVTFMGWVHEIRDLG-GLIFVLLRDREGLIQITAPAKK--VSKNLFKWAKKLNLESVVAVRGIVKIKE 78 (428)
T ss_pred chhhCchhhCCCEEEEEEEEEEEecCC-CcEEEEEEeCCeeEEEEEECCc--CCHHHHHHHhCCCCCcEEEEEEEEEecC
Confidence 356677778899999999999999999 6999999999999999998643 5778999999999999999999998643
Q ss_pred cccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHH
Q 013865 174 VEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 252 (435)
Q Consensus 174 ~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs 252 (435)
+ .++++||++++|+|||+| .+||++.++.. ..++++|++|||||||++..+++|++||
T Consensus 79 ~----~~~~~el~~~~i~vl~~~~~~lP~~~~~~~-----------------~~~~~~r~~~R~ldlr~~~~~~~~r~Rs 137 (428)
T TIGR00458 79 K----APGGFEIIPTKIEVINEAKEPLPLDPTEKV-----------------PAELDTRLDYRFLDLRRPTVQAIFRIRS 137 (428)
T ss_pred C----CCCcEEEEEeEEEEEecCCCCCCCCccccC-----------------CCCHHHHhhhhhhhhCCHHHHHHHHHHH
Confidence 2 346899999999999999 89999876531 2578999999999999999999999999
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCC
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTH 332 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~ 332 (435)
.|++++|+||.++||+||+||+|+++++|||+++|.++||+.++||+||||||||+++++|++|||+||||||||+++|+
T Consensus 138 ~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR~E~~~t~ 217 (428)
T TIGR00458 138 GVLESVREFLAEEGFIEVHTPKLVASATEGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFRAEEHNTH 217 (428)
T ss_pred HHHHHHHHHHHHCCCEEEeCCceecCCCCCCcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEecccccCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred ccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcCC
Q 013865 333 RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGV 412 (435)
Q Consensus 333 rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~g~ 412 (435)
|||||||||||||+|++ |+|+|+++|+||.+++..+.++|..+++.++..++. ...||+||||.||+++|++.|.
T Consensus 218 rHl~EFt~lE~e~a~~~-~~dlm~~~e~li~~i~~~~~~~~~~~~~~~~~~~~~----~~~pf~rity~eA~~~l~~~g~ 292 (428)
T TIGR00458 218 RHLNEATSIDIEMAFED-HHDVMDILEELVVRVFEDVPERCAHQLETLEFKLEK----PEGKFVRLTYDEAIEMANAKGV 292 (428)
T ss_pred cchheeeEeeeeeccCC-HHHHHHHHHHHHHHHHHHHHhcchhhhhhccccccc----CCCCceEEEHHHHHHHHHHcCC
Confidence 99999999999999996 999999999999999999999988877654332211 1358999999999999999999
Q ss_pred CCCCCCCCCcHHHHHHHHHhh
Q 013865 413 EIDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 413 ~~~~~~dl~te~E~~L~~~vk 433 (435)
+++|++||++++|+.|++.+.
T Consensus 293 ~~~~~~~l~~~~E~~l~~~~~ 313 (428)
T TIGR00458 293 EIGWGEDLSTEAEKALGEEMD 313 (428)
T ss_pred CCCCccccchHHHHHHHHHhC
Confidence 999999999999999998653
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). |
| >PRK05159 aspC aspartyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-72 Score=586.70 Aligned_cols=314 Identities=39% Similarity=0.623 Sum_probs=285.9
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.+.+++|.....|++|+|+|||+++|.+| |++|++|||+++.||||++.+. + ++++++++.|+.||+|.|+|+|..
T Consensus 4 ~~~~~~l~~~~~g~~V~i~GrV~~~R~~g-k~~Fl~LrD~~g~iQ~v~~~~~--~-~~~~~~~~~L~~gs~V~v~G~v~~ 79 (437)
T PRK05159 4 RHLTSELTPELDGEEVTLAGWVHEIRDLG-GIAFLILRDRSGIIQVVVKKKV--D-EELFETIKKLKRESVVSVTGTVKA 79 (437)
T ss_pred eeEhhhCChhhCCCEEEEEEEeEeeecCC-CeEEEEEEcCCcEEEEEEeCCc--c-HHHHHHHhCCCCCcEEEEEEEEEc
Confidence 46888999888999999999999999999 8999999999999999998643 2 678889999999999999999987
Q ss_pred CCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHH
Q 013865 172 PDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~ 250 (435)
+++ ..+++||++++|.|||+| .++|+...+. ...+.++|++|||||||++.++++|++
T Consensus 80 ~~~----~~~~~el~~~~i~vls~a~~~~P~~~~~~-----------------~~~~~~~~~~~r~Ldlr~~~~~~~l~~ 138 (437)
T PRK05159 80 NPK----APGGVEVIPEEIEVLNKAEEPLPLDISGK-----------------VLAELDTRLDNRFLDLRRPRVRAIFKI 138 (437)
T ss_pred CCC----CCCCEEEEEeEEEEEeCCCCCCCCCcccc-----------------ccCCHHHHhhCcceecCCHHHHHHHHH
Confidence 542 236799999999999999 7999875432 114689999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCC
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~ 330 (435)
||.|++++|+||.++||+||+||+|+++++|||++.|.++|||.++||+||||||||+++++|++|||+||||||||+++
T Consensus 139 Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~~f~~~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E~~~ 218 (437)
T PRK05159 139 RSEVLRAFREFLYENGFTEIFTPKIVASGTEGGAELFPIDYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAEEHN 218 (437)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCcccccCCCCCcceEeEEecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCCCCC
Confidence 99999999999999999999999999889999999999999999999999999999999999999999999999999998
Q ss_pred CCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHc
Q 013865 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 410 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~ 410 (435)
|+|||||||||||||+|.++|+|+|+++|+||.++++.+.+++..++..++..++ .+..||+||||.||+++|++.
T Consensus 219 t~rHl~EFt~lE~e~a~~~~~~~lm~~~e~lv~~i~~~~~~~~~~~i~~~~~~~~----~~~~~f~rit~~eA~~~l~~~ 294 (437)
T PRK05159 219 TSRHLNEYTSIDVEMGFIDDHEDVMDLLENLLRYMYEDVAENCEKELELLGIELP----VPETPIPRITYDEAIEILKSK 294 (437)
T ss_pred CcccchhhheeeeeeeecccHHHHHHHHHHHHHHHHHHHHHhhHHHHHhhccCCC----cCCCCceEeEHHHHHHHHHHc
Confidence 8999999999999999997799999999999999999999988888877664332 134699999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhhc
Q 013865 411 GVEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 411 g~~~~~~~dl~te~E~~L~~~vke 434 (435)
|.+++|++|+++++|+.|++++.+
T Consensus 295 ~~~~~~~~~~~~~~e~~l~~~~~~ 318 (437)
T PRK05159 295 GNEISWGDDLDTEGERLLGEYVKE 318 (437)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHhh
Confidence 999999999999999999999865
|
|
| >PLN02221 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-70 Score=577.73 Aligned_cols=303 Identities=27% Similarity=0.394 Sum_probs=265.3
Q ss_pred CCCCCCEEEEEEEEeeeecCCC-ceEEEEEEeCC--eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCccc
Q 013865 100 GSLKDQEVLIRGRVHTTRPVGN-KLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (435)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~-kl~Fl~Lrd~~--~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~ 176 (435)
..+.|+.|+|+||||++|.+|+ +++|++|||++ +.||||+..+.. .....|+.||+|.|+|+|+.++. .
T Consensus 46 ~~~~g~~V~I~GWV~~iR~~Gk~~i~Fl~LRDgs~~g~iQvVv~~~~~-------~~~~~L~~ES~V~V~G~V~~~~~-~ 117 (572)
T PLN02221 46 AGLAGQKVRIGGWVKTGREQGKGTFAFLEVNDGSCPANLQVMVDSSLY-------DLSTLVATGTCVTVDGVLKVPPE-G 117 (572)
T ss_pred hhcCCCEEEEEEEEEehhhCCCceEEEEEEeCCcccccEEEEEcCchh-------hHHhcCCCceEEEEEEEEEeCCc-c
Confidence 5688999999999999999996 48999999999 799999975311 11236899999999999987654 3
Q ss_pred CCCceeEEEEEeEEEEeecC-C-CCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHH
Q 013865 177 KGATQQVEVQIKKLYCVSRA-A-KTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV 254 (435)
Q Consensus 177 ~~~t~~lEi~v~~i~vls~~-~-~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i 254 (435)
++++|++||++++|.|||+| . ++|++... .+.++++++|||++|++..+++||+||.|
T Consensus 118 ~~~~~~iEl~v~~i~vl~~a~~~~~Pi~~~~--------------------~~~e~lrr~~hLR~R~~~~~Ai~RiRS~i 177 (572)
T PLN02221 118 KGTKQKIELSVEKVIDVGTVDPTKYPLPKTK--------------------LTLEFLRDVLHLRSRTNSISAVARIRNAL 177 (572)
T ss_pred CCCCccEEEEEeEEEEEecCCCCCCCCCCCc--------------------CChHHHhhcchhhcCCHHHHHHHHHHHHH
Confidence 45678999999999999999 3 78886432 35788889999999999999999999999
Q ss_pred HHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe---------------------------------------------
Q 013865 255 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--------------------------------------------- 289 (435)
Q Consensus 255 ~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--------------------------------------------- 289 (435)
+++||+||.++||+||+||+|++++||||++.|.|
T Consensus 178 ~~aiR~ff~~~gFiEI~TP~Lt~s~~EGg~e~F~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (572)
T PLN02221 178 AFATHSFFQEHSFLYIHTPIITTSDCEGAGEMFQVTTLINYTERLEQDLIDNPPPTEADVEAARLIVKERGEVVAQLKAA 257 (572)
T ss_pred HHHHHHHHHHCCCEEEeCCeeccccCCCCccceeeeecccccccccccccccCcccchhhhhhhhhhhhhcchhhhhhcc
Confidence 99999999999999999999999999999999886
Q ss_pred ---------------------------------------------ccCCCceeeccChHHHHhhhccCCCceeEEEecce
Q 013865 290 ---------------------------------------------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324 (435)
Q Consensus 290 ---------------------------------------------~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~F 324 (435)
+|||+++||+||||||||+++ +|++|||+|||+|
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dyFg~~ayLtqS~QLy~e~~~-~~l~rVfeIgP~F 336 (572)
T PLN02221 258 KASKEEITAAVAELKIAKESLAHIEERSKLKPGLPKKDGKIDYSKDFFGRQAFLTVSGQLQVETYA-CALSSVYTFGPTF 336 (572)
T ss_pred ccchhhhhhhhhhhhhhhhhhhhhhhhhhcccCCcccccccccccccCCCCeeeccCHHHHHHHHH-HhcCCeEEEccce
Confidence 799999999999999999865 5799999999999
Q ss_pred ecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcc---c--CCCCCCceee
Q 013865 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP---L--KYKPKTLRLT 399 (435)
Q Consensus 325 R~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~---~--~~~~p~~rit 399 (435)
|||+++|+||||||||||+||+|.+ |+|+|+++|+||+++++.+.++|.++|+.+...++... + .+..||+|||
T Consensus 337 RAE~s~T~RHL~EFtmlE~Emaf~d-~~dvm~l~E~lv~~i~~~l~~~~~~~l~~l~~~~~~~~~~~l~~~~~~pf~RIt 415 (572)
T PLN02221 337 RAENSHTSRHLAEFWMVEPEIAFAD-LEDDMNCAEAYVKYMCKWLLDKCFDDMELMAKNFDSGCIDRLRMVASTPFGRIT 415 (572)
T ss_pred ecCCCCCCcccccccceeeeeecCC-HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhcCchhhhhhhhccCCCceEEE
Confidence 9999999999999999999999996 99999999999999999999999999988765543211 1 1346999999
Q ss_pred HHHHHHHHHHc---CC----CCCCCCCCCcHHHHHHHHHh
Q 013865 400 FEEGVQMLKDA---GV----EIDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 400 ~~eai~lL~~~---g~----~~~~~~dl~te~E~~L~~~v 432 (435)
|.||+++|++. |. ++.|++||++++|++|++++
T Consensus 416 y~EAi~~L~~~~~~g~~~~~~~~~G~dl~~e~Er~L~~~~ 455 (572)
T PLN02221 416 YTEAIELLEEAVAKGKEFDNNVEWGIDLASEHERYLTEVL 455 (572)
T ss_pred HHHHHHHHHhhhhcCCCCCCCcchhhhhhHHHHHHHHHHh
Confidence 99999999984 54 34689999999999999985
|
|
| >PRK03932 asnC asparaginyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=559.31 Aligned_cols=309 Identities=27% Similarity=0.407 Sum_probs=274.9
Q ss_pred Eeccc-cCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 94 VVGAL-NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 94 ~i~~l-~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
.++++ ...+.|++|+|+|||+++|.+| |++|++|||+++.+|+++..+. +.+++++++.|+.||+|.|+|++..+
T Consensus 5 ~~~~~~~~~~~~~~V~i~G~v~~~R~~g-~~~Fi~lrD~~g~iq~~~~~~~---~~~~~~~~~~l~~~s~v~v~G~v~~~ 80 (450)
T PRK03932 5 SIKDILKGKYVGQEVTVRGWVRTKRDSG-KIAFLQLRDGSCFKQLQVVKDN---GEEYFEEIKKLTTGSSVIVTGTVVES 80 (450)
T ss_pred EHHHhcccccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCcEEEEEEcCC---ChHHHHHHhcCCCCcEEEEEEEEEcC
Confidence 35555 4578899999999999999998 8999999999999999997643 46788889999999999999999875
Q ss_pred CcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHH
Q 013865 173 DVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~r 251 (435)
+. .++++||++++|.||++| .++|+..++ .+.++|+++||||||++.++++|++|
T Consensus 81 ~~----~~~~~el~~~~i~vl~~~~~~~p~~~~~--------------------~~~~~~~~~r~l~lR~~~~~~~l~~R 136 (450)
T PRK03932 81 PR----AGQGYELQATKIEVIGEDPEDYPIQKKR--------------------HSIEFLREIAHLRPRTNKFGAVMRIR 136 (450)
T ss_pred CC----CCCCEEEEEEEEEEccCCCCCCCCCccc--------------------cChHHHhhCceeeccCHHHHHHHHHH
Confidence 42 346899999999999999 889987543 24688999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe---------ccCCCceeeccChHHHHhhhccCCCceeEEEec
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL---------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGP 322 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v---------~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp 322 (435)
|.|++++|+||.++||+||+||+|+++++||++++|.| +|||.++||+||||||||++ ++|++|||+|||
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l-~~g~~rVf~i~~ 215 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAY-AMALGKVYTFGP 215 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHH-HhccCCeEEeee
Confidence 99999999999999999999999999999999999999 89999999999999999975 579999999999
Q ss_pred ceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccC-----CCCCCce
Q 013865 323 VFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK-----YKPKTLR 397 (435)
Q Consensus 323 ~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~p~~r 397 (435)
|||||+++|+|||||||||||||+|++ ++|+|+++|+||+++++.+.+++..+|+.++.+.+...++ ...||+|
T Consensus 216 ~FR~E~~~t~rHl~EFt~lE~e~~~~~-~~~~m~~~e~li~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~r 294 (450)
T PRK03932 216 TFRAENSNTRRHLAEFWMIEPEMAFAD-LEDNMDLAEEMLKYVVKYVLENCPDDLEFLNRRVDKGDIERLENFIESPFPR 294 (450)
T ss_pred ccccCCCCCccccccccccceEEeccC-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccccCchHHHHHHhhcCCCceE
Confidence 999999999999999999999999996 9999999999999999999999998998887655433221 2369999
Q ss_pred eeHHHHHHHHHHcCCC----CCCCCCCCcHHHHHHHH-Hh
Q 013865 398 LTFEEGVQMLKDAGVE----IDPLGDLNTESERKLGQ-LV 432 (435)
Q Consensus 398 it~~eai~lL~~~g~~----~~~~~dl~te~E~~L~~-~v 432 (435)
|||.||+++|++.|.+ +.|+.||++++|++|++ .+
T Consensus 295 ity~eA~~~l~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~ 334 (450)
T PRK03932 295 ITYTEAIEILQKSGKKFEFPVEWGDDLGSEHERYLAEEHF 334 (450)
T ss_pred eEHHHHHHHHHHcCCCcCCCCCcccccChHHHHHHHHHhc
Confidence 9999999999998764 36889999999999998 44
|
|
| >TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-69 Score=567.62 Aligned_cols=302 Identities=24% Similarity=0.376 Sum_probs=256.3
Q ss_pred CCCCCCcccccccCcce-EEeccccC---CCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH
Q 013865 76 NDPQTGKWSEAVNGREW-TVVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~~-~~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~ 151 (435)
.+||||+|.++++..++ ..+.++.. ...|++|+|+|||+++|.+| |++|++|||++++||+|++.+. ++.+++
T Consensus 21 ~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~g-k~~F~~l~D~~g~iQ~~~~~~~--~~~~~~ 97 (496)
T TIGR00499 21 NNPYLNKFERTHSSQEFQEEYADLSNEELEDKNIEVSIAGRIMARRSMG-KATFITLQDESGQIQLYVNKDD--LPEDFY 97 (496)
T ss_pred CCCCCCCCCCCcCHHHHHHHhhccCccchhcCCCEEEEEEEEEEEecCC-CeEEEEEEcCCccEEEEEECCc--CcHHHH
Confidence 38999999998776443 12222221 24488999999999999988 8999999999999999998643 456777
Q ss_pred HHHh-cCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcc
Q 013865 152 RFVR-SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQD 229 (435)
Q Consensus 152 k~~~-~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e 229 (435)
++.. .|+.||+|.|+|++.+++ +|++||++++|.+||+| .+||....+ .++++
T Consensus 98 ~~~~~~l~~gd~V~v~G~~~~t~------~gelel~~~~i~ilsk~~~plP~k~~~-------------------~~d~e 152 (496)
T TIGR00499 98 EFDEYLLDLGDIIGVTGYPFKTK------TGELSVHVTELQILTKALRPLPDKFHG-------------------LTDQE 152 (496)
T ss_pred HHHHhcCCCCCEEEEEEEEEECC------CCcEEEEeeEEEEEecCCCCCCccccc-------------------cCChh
Confidence 7766 489999999999997643 47899999999999999 899976432 36889
Q ss_pred cccccccccccc-HHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEecc--CCCceeeccChHHHH
Q 013865 230 TRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSACLAQSPQLHK 306 (435)
Q Consensus 230 trl~~R~Ldlr~-~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~~L~~Spql~l 306 (435)
+||++||||||+ +.++++|++||.|+++||+||.++||+||+||+|++..+++++.||.+.| |+.++||+|||||||
T Consensus 153 ~r~r~R~Ldl~~n~~~~~~~r~Rs~i~~~iR~fl~~~gF~EVeTP~L~~~~gga~a~pF~t~~~~~~~~~yLriSpELyl 232 (496)
T TIGR00499 153 TRYRQRYLDLIVNPDSRQTFLVRSKIIKAIRRFLDDRGFIEVETPMLQVIPGGANARPFITHHNALDMDLYLRIAPELYL 232 (496)
T ss_pred hhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCcCEEEeCCeeecCCCCccceeEEeecccCCCceEEecCHHHHH
Confidence 999999999996 89999999999999999999999999999999998664333346899865 999999999999999
Q ss_pred hhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCC
Q 013865 307 QMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPF 386 (435)
Q Consensus 307 q~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~ 386 (435)
|++++||++||||||||||||+++ .|||||||||||||+|++ |+|+|+++|+||++++..+.+.+... ++.
T Consensus 233 KrlivgG~~rVfeIg~~FRnE~~~-~rH~pEFTmlE~y~a~~d-~~dlm~~~E~li~~i~~~l~~~~~~~-------~~~ 303 (496)
T TIGR00499 233 KRLIVGGFEKVYEIGRNFRNEGVD-TTHNPEFTMIEFYQAYAD-YEDLMDLTENLFKFLAQELLGTTKIT-------YGE 303 (496)
T ss_pred HHHHhCCCCceEEEecceecCCCC-CcccchhheeehhhhcCC-HHHHHHHHHHHHHHHHHHHhccccee-------cCc
Confidence 999999999999999999999984 699999999999999995 99999999999999999997766543 233
Q ss_pred cccCCCCCCceeeHHHHHHHHHH-cCCCC
Q 013865 387 EPLKYKPKTLRLTFEEGVQMLKD-AGVEI 414 (435)
Q Consensus 387 ~~~~~~~p~~rit~~eai~lL~~-~g~~~ 414 (435)
..+++..||+||||.||+++|.+ .|+++
T Consensus 304 ~~~~~~~pf~rit~~eai~~~~~~~g~~~ 332 (496)
T TIGR00499 304 LEIDFKKPFKRITMVEAIKKYDMETGIDF 332 (496)
T ss_pred eeccCCCCceEEEHHHHHHHHHHhcCCCc
Confidence 34567789999999999998854 67764
|
This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms. |
| >TIGR00457 asnS asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-67 Score=548.66 Aligned_cols=302 Identities=26% Similarity=0.410 Sum_probs=267.9
Q ss_pred CCCCCEEEEEEEEeeeecCCCceEEEEEEeCC--eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCC
Q 013865 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~--~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (435)
.+.|++|+|+|||+++|.+| |++|++|||++ +.||||++.+ .+.++++++..|+.||+|.|+|+|..++ +
T Consensus 13 ~~~g~~v~v~Gwv~~~R~~~-~~~F~~lrD~~~~g~iQ~v~~~~---~~~~~~~~~~~l~~gs~V~v~G~v~~~~----~ 84 (453)
T TIGR00457 13 KFVGDEVTVSGWVRTKRSSK-KIIFLELNDGSSLGPIQAVINGE---DNPYLFQLLKSLTTGSSVSVTGKVVESP----G 84 (453)
T ss_pred hcCCCEEEEEEEeEEEEcCC-CeEEEEEECCCCCccEEEEEeCC---cChHHHHHHHcCCCCcEEEEEEEEEcCC----C
Confidence 56799999999999999887 99999999999 9999999864 2457788889999999999999998743 2
Q ss_pred CceeEEEEEeEEEEeecCC--CCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHHHH
Q 013865 179 ATQQVEVQIKKLYCVSRAA--KTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGN 256 (435)
Q Consensus 179 ~t~~lEi~v~~i~vls~~~--~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~ 256 (435)
.++++||.+++|.||++|. ++|++.++ .+.++|+++||||+|++..+++|++||.|++
T Consensus 85 ~~~~~El~~~~i~vl~~~~~~~~P~~~~~--------------------~~~~~~~~~r~l~lR~~~~~~~lr~Rs~i~~ 144 (453)
T TIGR00457 85 KGQPVELQVKKIEVVGEAEPDDYPLQKKE--------------------HSLEFLRDIAHLRLRTNTLGAVMRVRNALSQ 144 (453)
T ss_pred CCCCEEEEEeEEEEEecCCccCCCCCccc--------------------cChhhHhhCcceecCCHHHHHHHHHHHHHHH
Confidence 3478999999999999993 78887543 3467899999999999999999999999999
Q ss_pred HHHHHhhcCCeEEeeCceeeccCCCCCcceeEec---------cCCCceeeccChHHHHhhhccCCCceeEEEecceecC
Q 013865 257 IFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---------YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 327 (435)
Q Consensus 257 ~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---------~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E 327 (435)
++|+||.++||+||+||+|+++++|||+++|.|. |||.++||+||||||||++ ++|++|||+||||||||
T Consensus 145 ~~r~~~~~~gf~eV~TP~l~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~yL~~Spql~lq~l-~~g~~rVf~i~~~FR~E 223 (453)
T TIGR00457 145 AIHRYFQENGFTWVSPPILTSNDCEGAGELFRVSTDGIDFSQDFFGKEAYLTVSGQLYLETY-ALALSKVYTFGPTFRAE 223 (453)
T ss_pred HHHHHHHHCCCEEecCCeEeecCCCCCCCceEecccccccchhccCCccccccCHHHHHHHH-hhcccCceEeeeccccC
Confidence 9999999999999999999999999999999987 9999999999999999976 68999999999999999
Q ss_pred CCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccC-----CCCCCceeeHHH
Q 013865 328 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK-----YKPKTLRLTFEE 402 (435)
Q Consensus 328 ~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~p~~rit~~e 402 (435)
+++|+|||||||||||||+|++ |+|+|+++|+||+++++.+.+++..+++.++..++...+. ...||+||||.|
T Consensus 224 ~~~t~rHl~EFt~le~e~~~~~-~~dvm~~~E~lv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~rit~~e 302 (453)
T TIGR00457 224 KSNTSRHLSEFWMIEPEMAFAN-LNDLLQLAETLIKYIIKAVLENCSQELKFLEKNFDKDLIKRLENIINNKFARITYTD 302 (453)
T ss_pred CCCCCcCcchhccceeeeecCC-HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhccCCchHHHHHHHhcCCCCceeEHHH
Confidence 9988999999999999999996 9999999999999999999998988887766544322111 124899999999
Q ss_pred HHHHHHHcCC----CCCCCCCCCcHHHHHHHHHh
Q 013865 403 GVQMLKDAGV----EIDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 403 ai~lL~~~g~----~~~~~~dl~te~E~~L~~~v 432 (435)
|+++|++.|. +..|++||++++|++|++.+
T Consensus 303 a~~~l~~~~~~~~~~~~~g~~l~~~~e~~L~~~~ 336 (453)
T TIGR00457 303 AIEILKESDKNFEYEDFWGDDLQTEHERFLAEEY 336 (453)
T ss_pred HHHHHHhcCCCCcCCCCCCCCCCcHHHHHHHHHh
Confidence 9999999864 34688999999999999875
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn. |
| >PTZ00417 lysine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-67 Score=558.61 Aligned_cols=325 Identities=18% Similarity=0.261 Sum_probs=263.6
Q ss_pred cccccCCCCCCcccCChhhhhcc----CCCCCCcccccccCcce-EEecccc--CCCCCCEEEEEEEEeeeecCCCceEE
Q 013865 53 SIEEEGPLANNYGDVPLQELQSV----NDPQTGKWSEAVNGREW-TVVGALN--GSLKDQEVLIRGRVHTTRPVGNKLAF 125 (435)
Q Consensus 53 ~~~~~d~~~~~Yg~~~~~~~~~~----~~~~p~~~~~~~~~~~~-~~i~~l~--~~~~g~~V~v~GrV~~~R~~G~kl~F 125 (435)
..+++|.+++.|...|...++.+ .|||||+|.++++..++ ..+.++. ....++.|+|+|||+++|.+|+|++|
T Consensus 74 ~~~~~~~~~~~~~~~r~~k~~~l~~~g~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G~k~~F 153 (585)
T PTZ00417 74 KEEEAEVDPRLYYENRSKFIQEQKAKGINPYPHKFERTITVPEFVEKYQDLASGEHLEDTILNVTGRIMRVSASGQKLRF 153 (585)
T ss_pred ccccccCChHHHHHHHHHHHHHHHhcCCCCCCCCCcCCcCHHHHHHHhhccCccccccCCeEEEEEEEEeeecCCCCCEE
Confidence 34667899999999998876654 39999999998776543 1223322 22345679999999999999988999
Q ss_pred EEEEeCCeEEEEEEeeCCCCCcHHHHH-HHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCccc
Q 013865 126 VVVRERVSTVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITI 203 (435)
Q Consensus 126 l~Lrd~~~~iQvv~~~~~~~~s~~~~k-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~ 203 (435)
++|||++++||||++.+....+.+.+. +.+.|+.||+|.|+|.+.+ +.+|++||.+++|.+|++| .+||+..
T Consensus 154 ~~L~d~~g~iQv~~~~~~~~~~~~~~~~~~~~l~~Gd~V~V~G~~~~------t~~gel~i~~~~i~llsk~l~~lP~~~ 227 (585)
T PTZ00417 154 FDLVGDGAKIQVLANFAFHDHTKSNFAECYDKIRRGDIVGIVGFPGK------SKKGELSIFPKETIILSPCLHMLPMKY 227 (585)
T ss_pred EEEEeCCeeEEEEEECCccCCCHHHHHHHHhcCCCCCEEEEEeEEcC------CCCceEEEEEEEEEEEecCCCCCCccc
Confidence 999999999999998643222233333 3578999999999999764 3357999999999999999 8999752
Q ss_pred ccccchHHHHHhhhhcCCCCCCCCccccccccccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCC
Q 013865 204 EDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282 (435)
Q Consensus 204 ~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~eg 282 (435)
+..+.++|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|++...+.
T Consensus 228 --------------------g~~d~e~r~r~RyLdL~~n~~~~~ifr~RS~Ii~aiR~Ff~~rGFlEVeTPiL~~~~GGA 287 (585)
T PTZ00417 228 --------------------GLKDTEIRYRQRYLDLMINESTRSTFITRTKIINYLRNFLNDRGFIEVETPTMNLVAGGA 287 (585)
T ss_pred --------------------CCCCcccccccchhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCeEEEeCCeeeccCCcc
Confidence 34678999999999999 589999999999999999999999999999999999763222
Q ss_pred CcceeEe--ccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHH
Q 013865 283 GSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDR 360 (435)
Q Consensus 283 ga~~F~v--~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~ 360 (435)
++.||.+ ++++.++||++|||||+|++++||++||||||||||||++ +.||||||||||||++|+| |+|+|+++|+
T Consensus 288 ~a~PF~T~~n~~d~~lYLriSpEL~lKrLlvgG~~rVfeIgp~FRnE~~-~~rHnpEFTmlE~y~ay~d-y~dlM~l~E~ 365 (585)
T PTZ00417 288 NARPFITHHNDLDLDLYLRIATELPLKMLIVGGIDKVYEIGKVFRNEGI-DNTHNPEFTSCEFYWAYAD-FYDLIKWSED 365 (585)
T ss_pred cceeEEecccCCCcceEEeecHHHHHHHHHHhCCCCEEEEcccccCCCC-CCCccceeeeeeeeeecCC-HHHHHHHHHH
Confidence 3348987 6899999999999999999999999999999999999998 4699999999999999995 9999999999
Q ss_pred HHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHH
Q 013865 361 LFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 405 (435)
Q Consensus 361 li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~ 405 (435)
||++++..+.+.+...+...+.......+++..||+|+||.||++
T Consensus 366 Li~~v~~~v~g~~~~~~~~~g~~~~~~~i~~~~pf~rit~~ea~~ 410 (585)
T PTZ00417 366 FFSQLVMHLFGTYKILYNKDGPEKDPIEIDFTPPYPKVSIVEELE 410 (585)
T ss_pred HHHHHHHHhcCcceeeecccccccccccccCCCCceeccHHHHHH
Confidence 999999988765433222111111112356778999999888876
|
|
| >PRK12445 lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-67 Score=552.48 Aligned_cols=306 Identities=20% Similarity=0.316 Sum_probs=253.8
Q ss_pred cccCChhhhhc---cCCCCCCcccccccCcce-EEeccccC---CCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEE
Q 013865 64 YGDVPLQELQS---VNDPQTGKWSEAVNGREW-TVVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQ 136 (435)
Q Consensus 64 Yg~~~~~~~~~---~~~~~p~~~~~~~~~~~~-~~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQ 136 (435)
|-..|+..++. .+.||||+|.++++...+ ..+.++.. ...|++|+|+|||+++|.+| |++|++|||++++||
T Consensus 18 ~~~~r~~k~~~l~~~g~py~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~Grv~~~R~~G-k~~F~~lrD~~g~iQ 96 (505)
T PRK12445 18 ELRNRREKLAALRQQGVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQ 96 (505)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCcCccCHHHHHHHhhccCcchhhcCCCEEEEEEEEEEEecCC-CcEEEEEEeCCccEE
Confidence 44455544332 234999999998877543 12222221 24488999999999999999 889999999999999
Q ss_pred EEEeeCCCCCcHHHHH-HHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHH
Q 013865 137 CLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIE 214 (435)
Q Consensus 137 vv~~~~~~~~s~~~~k-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~ 214 (435)
||+..+. ++.+.++ ....|..||+|.|+|++.++. +|++||++++|.+||+| .+||....+
T Consensus 97 ~~~~~~~--~~~~~~~~~~~~l~~Gd~V~v~G~~~~t~------~gelel~~~~~~llsk~~~plP~~~~~--------- 159 (505)
T PRK12445 97 LYVARDS--LPEGVYNDQFKKWDLGDIIGARGTLFKTQ------TGELSIHCTELRLLTKALRPLPDKFHG--------- 159 (505)
T ss_pred EEEECCc--cchhhHHHHHhcCCCCCEEEEEEEEEecC------CCcEEEEEeEEEEEecCCCCCCccccc---------
Confidence 9998542 2333332 456799999999999998743 57899999999999999 999986433
Q ss_pred hhhhcCCCCCCCCcccccccccccccc-HHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcc--eeEe--
Q 013865 215 KASKEGVQLPRVNQDTRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSA--VFRL-- 289 (435)
Q Consensus 215 ~~~~~~~~~~~~~~etrl~~R~Ldlr~-~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~--~F~v-- 289 (435)
..+.++|+++||||||+ +.++++|++||.|+++||+||.++||+||+||+|++. +|||. ||.+
T Consensus 160 ----------~~d~e~r~r~Ryldl~~n~~~r~~~r~Rs~i~~~iR~f~~~~gFiEVeTPiL~~~--~gGa~a~pF~t~~ 227 (505)
T PRK12445 160 ----------LQDQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVI--PGGASARPFITHH 227 (505)
T ss_pred ----------ccChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCeeEec--CCCCcccceeccc
Confidence 36789999999999996 9999999999999999999999999999999999854 45554 8875
Q ss_pred ccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhh
Q 013865 290 DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGL 369 (435)
Q Consensus 290 ~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~ 369 (435)
+||+.++||+||||||||++++||++||||||||||||++ |.|||||||||||||+|++ |+|+|+++|+||++++..+
T Consensus 228 ~~~~~~~yL~~SpELylKrlivgG~~rVfeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d-~~d~m~l~E~li~~l~~~~ 305 (505)
T PRK12445 228 NALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYAD-YHDLIELTESLFRTLAQEV 305 (505)
T ss_pred ccCCcceeeecCHHHHHHHHHhccCCcEEEEehhccCCCC-CCCcCcccceeeeeeecCC-HHHHHHHHHHHHHHHHHHH
Confidence 7899999999999999999999999999999999999997 9999999999999999995 9999999999999999888
Q ss_pred hhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHH
Q 013865 370 NNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 370 ~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~ 408 (435)
.+.+... +....+++..||+||||.||++.+.
T Consensus 306 ~~~~~~~-------~~~~~i~~~~pf~rit~~eai~~~~ 337 (505)
T PRK12445 306 LGTTKVT-------YGEHVFDFGKPFEKLTMREAIKKYR 337 (505)
T ss_pred hccccee-------cCceeccCCCCceEEEHHHHHHHHh
Confidence 7654322 2333456778999999999998664
|
|
| >PRK00484 lysS lysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-67 Score=549.34 Aligned_cols=300 Identities=24% Similarity=0.356 Sum_probs=250.6
Q ss_pred CCCCCCcccccccCcce----EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH
Q 013865 76 NDPQTGKWSEAVNGREW----TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~~----~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~ 151 (435)
.|||||+|.++++..+. ..+..-.....+++|+|+|||+++|.+| +++|++|||++++||||++.+. ++.+++
T Consensus 22 ~~~yp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~G~v~~~R~~g-~~~Fi~lrD~~g~iQ~v~~~~~--~~~~~~ 98 (491)
T PRK00484 22 IDPYPNKFERTHTAAELRAKYDDKEKEELEELEIEVSVAGRVMLKRVMG-KASFATLQDGSGRIQLYVSKDD--VGEEAL 98 (491)
T ss_pred CCCCCCCCcCccCHHHHHHHhccccchhhcccCcEEEEEEEEEEEecCC-ceEEEEEEcCCccEEEEEECCc--CCHHHH
Confidence 48999999998776432 2222101112347899999999999999 8999999999999999998642 456777
Q ss_pred HHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccc
Q 013865 152 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDT 230 (435)
Q Consensus 152 k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~et 230 (435)
+.+..|+.||+|.|+|+|..++ +|++||+++++.+||+| .+||+...+ ..+.++
T Consensus 99 ~~~~~l~~g~~v~v~G~v~~t~------~ge~el~~~~~~vls~~~~plP~~~~~-------------------~~~~~~ 153 (491)
T PRK00484 99 EAFKKLDLGDIIGVEGTLFKTK------TGELSVKATELTLLTKSLRPLPDKFHG-------------------LTDVET 153 (491)
T ss_pred HHHhcCCCCCEEEEEEEEEEcC------CCcEEEEEeEEEEEeccCCCCCccccc-------------------ccchhh
Confidence 7777899999999999998643 47899999999999999 899986432 357899
Q ss_pred cccccccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHh
Q 013865 231 RLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQ 307 (435)
Q Consensus 231 rl~~R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq 307 (435)
|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++.+++++.+|.+ +||+.++||+||||||||
T Consensus 154 r~r~R~lDl~~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk 233 (491)
T PRK00484 154 RYRQRYVDLIVNPESRETFRKRSKIISAIRRFLDNRGFLEVETPMLQPIAGGAAARPFITHHNALDIDLYLRIAPELYLK 233 (491)
T ss_pred hccceeeehhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCceeccCCCccceeeeeccccCCCceEeccCHHHHHH
Confidence 9999999998 5999999999999999999999999999999999986533333469975 789999999999999999
Q ss_pred hhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCc
Q 013865 308 MSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFE 387 (435)
Q Consensus 308 ~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~ 387 (435)
++++||++|||+||||||||+++ .|||||||||||||+|.+ |+|+|+++|+||+++++.+.+++. +. +...
T Consensus 234 ~l~v~g~~rVfei~~~FR~E~~~-~rH~pEFt~lE~e~a~~d-~~d~m~~~E~li~~i~~~~~~~~~--i~-----~~~~ 304 (491)
T PRK00484 234 RLIVGGFERVYEIGRNFRNEGID-TRHNPEFTMLEFYQAYAD-YNDMMDLTEELIRHLAQAVLGTTK--VT-----YQGT 304 (491)
T ss_pred HHHhccCCcEEEEecceecCCCC-CCcCCceEEEEEEEecCC-HHHHHHHHHHHHHHHHHHHhCCce--Ee-----cCCE
Confidence 99999999999999999999985 599999999999999995 999999999999999999876422 21 1222
Q ss_pred ccCCCCCCceeeHHHHHHHHHHcCCCC
Q 013865 388 PLKYKPKTLRLTFEEGVQMLKDAGVEI 414 (435)
Q Consensus 388 ~~~~~~p~~rit~~eai~lL~~~g~~~ 414 (435)
.+++..||+||||.||++.+ .|+++
T Consensus 305 ~~~~~~pf~rity~eai~~~--~g~~~ 329 (491)
T PRK00484 305 EIDFGPPFKRLTMVDAIKEY--TGVDF 329 (491)
T ss_pred eecCCCCceEEEHHHHHHHH--hCCCc
Confidence 35566799999999999864 35543
|
|
| >PLN02603 asparaginyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-66 Score=550.30 Aligned_cols=300 Identities=23% Similarity=0.354 Sum_probs=261.6
Q ss_pred CCCCCEEEEEEEEeeeecCCCceEEEEEEeCCe--EEEEEEeeCCCCCcHHHHHHHh--cCCCCcEEEEEEEEecCCccc
Q 013865 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVS--TVQCLATVKPDSVSKEMVRFVR--SLSNESIVDVIGVVSVPDVEI 176 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~--~iQvv~~~~~~~~s~~~~k~~~--~l~~esiV~V~G~v~~~~~~~ 176 (435)
.+.|++|+|+|||+++|.+| +++|++|||+++ .||||+..+. ..++.+. .|+.||+|.|+|+|+.++
T Consensus 104 ~~~g~~V~v~GwV~~iR~~g-~~~Fi~l~Dgs~~~~lQ~v~~~~~-----~~~~~l~~~~l~~gs~V~V~G~v~~~~--- 174 (565)
T PLN02603 104 ARVGKTLNVMGWVRTLRAQS-SVTFIEVNDGSCLSNMQCVMTPDA-----EGYDQVESGLITTGASVLVQGTVVSSQ--- 174 (565)
T ss_pred ccCCCEEEEEEEEEEEEeCC-CeEEEEEECCCCCEeEEEEEECcH-----HHHHHHhhcCCCCCCEEEEEEEEEecC---
Confidence 57799999999999999998 899999999885 6999997532 1123333 499999999999998754
Q ss_pred CCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHHH
Q 013865 177 KGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVG 255 (435)
Q Consensus 177 ~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~ 255 (435)
++.+.+||++++|.+|++| .++|++.++ .+.+.+..++|||+|++.++++||+||.|+
T Consensus 175 -~~~~~~EL~v~~i~vlg~a~~~~Pi~~~~--------------------~s~e~lr~~~hLr~Rt~~~~ai~RiRS~i~ 233 (565)
T PLN02603 175 -GGKQKVELKVSKIVVVGKSDPSYPIQKKR--------------------VSREFLRTKAHLRPRTNTFGAVARVRNALA 233 (565)
T ss_pred -CCCccEEEEEeEEEEEECCCCCCCCcccc--------------------cchhhhhhhhhhhhccHHHHHHHHHHHHHH
Confidence 3346799999999999999 899987544 235667789999999999999999999999
Q ss_pred HHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe------------------------------ccCCCceeeccChHHH
Q 013865 256 NIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL------------------------------DYKGQSACLAQSPQLH 305 (435)
Q Consensus 256 ~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v------------------------------~~~~~~~~L~~Spql~ 305 (435)
+++|+||.++||+||+||+|++++||||++.|.| +|||+++||+||||||
T Consensus 234 ~air~ff~~~gF~eV~TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~LtvS~QL~ 313 (565)
T PLN02603 234 YATHKFFQENGFVWVSSPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTVSGQLN 313 (565)
T ss_pred HHHHHHHHHCCCEEEECCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeeccCchHH
Confidence 9999999999999999999999999999998854 6899999999999999
Q ss_pred HhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCC
Q 013865 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP 385 (435)
Q Consensus 306 lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~ 385 (435)
||++ ++||+|||+||||||||+|+|+|||+||||||+||+|++ ++|+|+++|++|+++++.+.++|..+|+.++...+
T Consensus 314 ~E~~-~~~l~rVy~igp~FRaE~s~T~RHL~EF~mlE~E~af~d-l~d~m~~~E~~l~~~~~~v~~~~~~el~~~~~~~~ 391 (565)
T PLN02603 314 GETY-ATALSDVYTFGPTFRAENSNTSRHLAEFWMIEPELAFAD-LNDDMACATAYLQYVVKYILENCKEDMEFFNTWIE 391 (565)
T ss_pred HHHH-HhcccceEEEecceeCCCCCCccccccceeeeeeeecCC-HHHHHHHHHHHHHHHHHHHHcccHhHHHhcCCccc
Confidence 9975 678999999999999999999999999999999999996 99999999999999999999999999988765443
Q ss_pred CcccC-----CCCCCceeeHHHHHHHHHHcC----CCCCCCCCCCcHHHHHHHHHh
Q 013865 386 FEPLK-----YKPKTLRLTFEEGVQMLKDAG----VEIDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 386 ~~~~~-----~~~p~~rit~~eai~lL~~~g----~~~~~~~dl~te~E~~L~~~v 432 (435)
...++ ...||+||||.||+++|++.+ ..++|++||++++|++|++.+
T Consensus 392 ~~~~~~l~~~~~~~f~rity~EAi~iL~~~~~~~~~~~~~g~dl~~e~Er~L~~~~ 447 (565)
T PLN02603 392 KGIIDRLSDVVEKNFVQLSYTDAIELLLKAKKKFEFPVKWGLDLQSEHERYITEEA 447 (565)
T ss_pred ccHHHHHHHhcCCCCCCCCHHHHHHHHHHhccccCCCCCccccccHHHHHHHHHHh
Confidence 22111 235899999999999999874 357899999999999999876
|
|
| >PTZ00425 asparagine-tRNA ligase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-65 Score=540.57 Aligned_cols=305 Identities=21% Similarity=0.316 Sum_probs=260.4
Q ss_pred CCCCCEEEEEEEEeeeecCCC-ceEEEEEEeCCe--EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc--
Q 013865 101 SLKDQEVLIRGRVHTTRPVGN-KLAFVVVRERVS--TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-- 175 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~-kl~Fl~Lrd~~~--~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-- 175 (435)
.+.|++|+|+|||+++|.+|+ +++|++|||+++ .||||+... ...+..+..|+.||+|.|+|+|...+..
T Consensus 78 ~~~g~~Vtl~GWv~~iR~~g~~~~~Fv~lrDgsg~~~iQiVv~~~-----~~~~~~l~~l~~gs~v~v~G~v~~~~~~~~ 152 (586)
T PTZ00425 78 KYIDQIITVCGWSKAVRKQGGGRFCFVNLNDGSCHLNLQIIVDQS-----IENYEKLLKCGVGCCFRFTGKLIISPVQNE 152 (586)
T ss_pred ccCCCEEEEEEEEeehhhcCCceEEEEEEECCCCCcceEEEECCc-----hHHHHHHhcCCCccEEEEEEEEEcCCcccc
Confidence 467999999999999999985 599999999997 699999643 1223455789999999999999864322
Q ss_pred -cCC-CceeEEEEE-----eEEEEeecC-C--CCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHH
Q 013865 176 -IKG-ATQQVEVQI-----KKLYCVSRA-A--KTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQ 245 (435)
Q Consensus 176 -~~~-~t~~lEi~v-----~~i~vls~~-~--~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~ 245 (435)
..| .++.+||++ +++.||+.+ . ++|++.+. .+.|+++++||||+|++..+
T Consensus 153 n~~g~~~~~~El~~~~~~~~~~~ilg~~~d~~~yPi~~k~--------------------~~~e~lr~~rhL~lR~~~~~ 212 (586)
T PTZ00425 153 NKKGLLKENVELALKDNSIHNFEIYGENLDPQKYPLSKKN--------------------HGKEFLREVAHLRPRSYFIS 212 (586)
T ss_pred CcCCCCCccEEEEEecCCCceEEEEeccCCCCCCCCCCcc--------------------CChhhhhhccceeccCHHHH
Confidence 112 246799998 799999988 4 57765332 35788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe------------------------------------
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL------------------------------------ 289 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v------------------------------------ 289 (435)
++||+||.|..++|+||.++||+||+||+|++++||||++.|.|
T Consensus 213 avlRiRs~l~~a~r~ff~~~gF~eI~TPiit~s~~EGa~elF~V~t~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 292 (586)
T PTZ00425 213 SVIRIRNALAIATHLFFQSRGFLYIHTPLITTSDCEGGGEMFTVTTLLGEDADYRAIPRVNKKNKKGEKREDILNTCNAN 292 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEeeCCeecccCCCCCcceEEeeecccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999987
Q ss_pred ---------------------------ccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCccccccccce
Q 013865 290 ---------------------------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342 (435)
Q Consensus 290 ---------------------------~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE 342 (435)
+|||+++||+||||||||++ ++|++|||+||||||||+++|+|||+||||||
T Consensus 293 ~~~~~~~~~~~~~~~q~~~~~~~~~~~~yF~k~ayL~~S~QLylE~~-~~g~~rVf~i~p~FRaE~s~t~RHL~EFt~lE 371 (586)
T PTZ00425 293 NNNGNSSSSNAVSSPAYPDQYLIDYKKDFFSKQAFLTVSGQLSLENL-CSSMGDVYTFGPTFRAENSHTSRHLAEFWMIE 371 (586)
T ss_pred ccccccccccccccccccccccccccccccCcceEEEcCchHHHHHH-HhccCCEEEEeceEeCCCCCCCCCCcccceEE
Confidence 59999999999999999976 57899999999999999999999999999999
Q ss_pred eeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCccc-----CCCCCCceeeHHHHHHHHHHcC----CC
Q 013865 343 VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPL-----KYKPKTLRLTFEEGVQMLKDAG----VE 413 (435)
Q Consensus 343 ~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~p~~rit~~eai~lL~~~g----~~ 413 (435)
+||+|++ ++|+|+++|+||+++++.+.++|..+|..++.......+ .+..||+||||.||+++|++.| .+
T Consensus 372 ~E~af~d-~~d~m~~~E~li~~v~~~vl~~~~~~i~~~~~~~~~~l~~~l~~~~~~pf~rIty~EAi~iL~~~~~~~~~~ 450 (586)
T PTZ00425 372 PEIAFAD-LYDNMELAESYIKYCIGYVLNNNFDDIYYFEENVETGLISRLKNILDEDFAKITYTNVIDLLQPYSDSFEVP 450 (586)
T ss_pred EEEecCC-HHHHHHHHHHHHHHHHHHHhcccccccccccccccccHHHHHHHhcCCCCCcCCHHHHHHHHHHhHHhcCCC
Confidence 9999996 999999999999999999998888887665432211111 1235899999999999998864 46
Q ss_pred CCCCCCCCcHHHHHHHHHh
Q 013865 414 IDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 414 ~~~~~dl~te~E~~L~~~v 432 (435)
++|++||++++|++|++.+
T Consensus 451 ~~~G~dL~~e~Er~L~~~~ 469 (586)
T PTZ00425 451 VKWGMDLQSEHERFVAEQI 469 (586)
T ss_pred CCcccccchHHHHHHHHHh
Confidence 7899999999999999985
|
|
| >PLN02532 asparagine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-65 Score=542.56 Aligned_cols=284 Identities=19% Similarity=0.312 Sum_probs=246.8
Q ss_pred ecCCCceEEEEEEeCCeE--EEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEee
Q 013865 117 RPVGNKLAFVVVRERVST--VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 117 R~~G~kl~Fl~Lrd~~~~--iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls 194 (435)
|.+| +++||+|||+++. ||||+..... . ....|+.|++|.|+|+|+....+ ..+|.+||.+++|.||+
T Consensus 130 r~~g-~i~FI~LrDGSg~~~lQvVv~~~~~--~-----~~~~L~~Es~V~V~G~V~~~~~~--~~~g~iEl~v~~i~VLg 199 (633)
T PLN02532 130 PPPP-SVAYLLISDGSCVASLQVVVDSALA--P-----LTQLMATGTCILAEGVLKLPLPA--QGKHVIELEVEKILHIG 199 (633)
T ss_pred ccCC-CcEEEEEECCCCccceEEEEeCCcc--c-----HhhcCCCceEEEEEEEEEecCCC--CCCCcEEEEeeEEEEEe
Confidence 6777 8999999999987 9999975421 1 12689999999999999875322 34578999999999999
Q ss_pred cC--CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeC
Q 013865 195 RA--AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHT 272 (435)
Q Consensus 195 ~~--~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~T 272 (435)
++ .++|++.+. .+.|+++++||||||++..+++||+||.|++++|+||.++||+||+|
T Consensus 200 ~a~~~p~Pi~~k~--------------------~~~E~LR~~RhLdLRt~~~~ailRiRS~i~~aiR~ff~~~GFiEV~T 259 (633)
T PLN02532 200 TVDPEKYPLSKKR--------------------LPLDMLRDFSHFRPRTTTVASVTRVRSALTHATHTFFQDHGFLYVQV 259 (633)
T ss_pred cCCCCCCcccccc--------------------CCHHHHhhCcceecCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeC
Confidence 97 478876432 35678889999999999999999999999999999999999999999
Q ss_pred ceeeccCCCCCcce------------------------------------------------------------------
Q 013865 273 PKLIAGSSEGGSAV------------------------------------------------------------------ 286 (435)
Q Consensus 273 P~l~~~~~egga~~------------------------------------------------------------------ 286 (435)
|+|++++||||++.
T Consensus 260 PiLT~s~~EGa~elF~v~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (633)
T PLN02532 260 PIITTTDATGFGEMFRVTTLLGKSDDKEEKKPVHETEGISLEAVKAAIKEKTNLVEELKRSESNREALVAAEQDLRKTNQ 339 (633)
T ss_pred CeecccCCCccccccceeccccccccccccccccccccccchhhhhhhhccccccccccccccccccccccccccccccc
Confidence 99999999999976
Q ss_pred -----------------------eEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCcccccccccee
Q 013865 287 -----------------------FRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343 (435)
Q Consensus 287 -----------------------F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~ 343 (435)
|.++|||+++||+||||||||+++ +||+|||+|||+||||+++|+|||+||||||+
T Consensus 340 ~~~~~~~~~~~~~~~~~~~~~~~f~~dyFg~~ayLtqS~QLylE~~~-~gl~rVYeIgP~FRAE~s~T~RHL~EFtmlE~ 418 (633)
T PLN02532 340 LASQLEAKEKLKTGTSVKADKLSFSKDFFSRPTYLTVSGRLHLESYA-CALGNVYTFGPRFRADRIDSARHLAEMWMVEV 418 (633)
T ss_pred ccccccccccccccccccccccccccccCCCCeeeccCHHHHHHHHH-HhcCceEEEccceecCCCCCCcccccccceee
Confidence 566799999999999999999865 58999999999999999999999999999999
Q ss_pred eeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcc-----cCCCCCCceeeHHHHHHHHHHcC-----CC
Q 013865 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP-----LKYKPKTLRLTFEEGVQMLKDAG-----VE 413 (435)
Q Consensus 344 e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~p~~rit~~eai~lL~~~g-----~~ 413 (435)
||+|++ |+|+|+++|+||+++++.+.++|..+|+.++..+.... ..+..||+||||.||+++|++.+ .+
T Consensus 419 Emaf~d-~~dvM~l~E~lI~~v~k~v~~~~~~el~~l~~~~~~~~~~~le~~~~~pf~RIty~EAi~iL~~~~~~~~e~~ 497 (633)
T PLN02532 419 EMAFSE-LEDAMNCAEDYFKFLCKWVLENCSEDMKFVSKRIDKTISTRLEAIISSSLQRISYTEAVDLLKQATDKKFETK 497 (633)
T ss_pred eehhcC-HHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccCCcchhhhhhcccCCCceEEEHHHHHHHHHHhcCCCcccc
Confidence 999996 99999999999999999999999999988765443211 12446999999999999998864 33
Q ss_pred CCCCCCCCcHHHHHHHHHh
Q 013865 414 IDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 414 ~~~~~dl~te~E~~L~~~v 432 (435)
++|++||++++|++|++.+
T Consensus 498 ~~~g~dL~~e~Er~L~~~~ 516 (633)
T PLN02532 498 PEWGIALTTEHLSYLADEI 516 (633)
T ss_pred cccCCccChHHHHHHHHHH
Confidence 6799999999999999873
|
|
| >PTZ00385 lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-64 Score=537.04 Aligned_cols=322 Identities=21% Similarity=0.291 Sum_probs=256.2
Q ss_pred CcccccccCcce-EEeccc--cCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hc
Q 013865 81 GKWSEAVNGREW-TVVGAL--NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RS 156 (435)
Q Consensus 81 ~~~~~~~~~~~~-~~i~~l--~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~ 156 (435)
|+|.++++..++ ..+.++ +....++.|+|+|||+++|.+| |++|++|||+++.||||+..+.. ++++++++. ..
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~vaGrV~~~R~~G-k~~F~~LrD~~G~IQvv~~~~~~-~~~~~~~~~~~~ 158 (659)
T PTZ00385 81 SSFRGITPISEVRERYGYLASGDRAAQATVRVAGRVTSVRDIG-KIIFVTIRSNGNELQVVGQVGEH-FTREDLKKLKVS 158 (659)
T ss_pred ccCcccccHHHHHHHhhccccccccCCCEEEEEEEEEeeeccC-CeEEEEEEECCceEEEEEECCcc-CCHHHHHHHHhC
Confidence 466666555332 122332 2223366799999999999999 79999999999999999986431 356666665 57
Q ss_pred CCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC--CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccc
Q 013865 157 LSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA--AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNN 234 (435)
Q Consensus 157 l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~--~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~ 234 (435)
|+.||+|.|+|+|.+. .+|++||++++|.+||++ ..+|+.... ....+..+.++||+|
T Consensus 159 l~~gdiV~V~G~v~~t------~~GeleI~~~~i~lLska~~~~~~~~p~~--------------~k~~~~~d~e~R~r~ 218 (659)
T PTZ00385 159 LRVGDIIGADGVPCRM------QRGELSVAASRMLILSPYVCTDQVVCPNL--------------RGFTVLQDNDVKYRY 218 (659)
T ss_pred CCCCCEEEEEEEEEec------CCceEEEEeeEEEEechhhhccccCCCCC--------------ccccccCChhhhccc
Confidence 9999999999999853 358999999999999995 233221100 002345789999999
Q ss_pred cccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHhhhcc
Q 013865 235 RVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSIC 311 (435)
Q Consensus 235 R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~~i~ 311 (435)
|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++++++|+.+|.+ ++|+.++||+||||||||+|++
T Consensus 219 RyLDL~~n~~~~~ifr~Rs~I~~aiR~ff~~~gFlEVeTPiL~~~~~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLiv 298 (659)
T PTZ00385 219 RFTDMMTNPCVIETIKKRHVMLQALRDYFNERNFVEVETPVLHTVASGANAKSFVTHHNANAMDLFLRVAPELHLKQCIV 298 (659)
T ss_pred ceeeeecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCEeeccCCCCCccceEeecccCCCCEEecCChHHHHHHHhh
Confidence 999997 5889999999999999999999999999999999998888889999998 4589999999999999999999
Q ss_pred CCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc--CCCccc
Q 013865 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQ--YPFEPL 389 (435)
Q Consensus 312 ~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~--~~~~~~ 389 (435)
||++||||||||||||++ +.||||||||||||++|++ |+|+|+++|+||++++..+.+.....+ ...+ .....+
T Consensus 299 gG~erVyeIg~~FRnE~~-~~rH~pEFTmlE~y~a~~d-~~d~m~l~E~li~~~~~~v~g~~~~~~--~~~~~~g~~~~i 374 (659)
T PTZ00385 299 GGMERIYEIGKVFRNEDA-DRSHNPEFTSCEFYAAYHT-YEDLMPMTEDIFRQLAMRVNGTTVVQI--YPENAHGNPVTV 374 (659)
T ss_pred cccCCEEEEeceecCCCC-CCCccccccceeeeeecCC-HHHHHHHHHHHHHHHHHHhcCCeeEEe--eccccCCCcccc
Confidence 999999999999999998 5899999999999999995 999999999999999998876432111 0000 000135
Q ss_pred CCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHH
Q 013865 390 KYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQ 430 (435)
Q Consensus 390 ~~~~p~~rit~~eai~lL~~~g~~~~~~~dl~te~E~~L~~ 430 (435)
++..||+||||.+++. +..|+++++++||++++|..++.
T Consensus 375 ~~~~Pf~Rit~~d~~~--e~~G~d~~~~~dl~~~~e~~~~~ 413 (659)
T PTZ00385 375 DLGKPFRRVSVYDEIQ--RMSGVEFPPPNELNTPKGIAYMS 413 (659)
T ss_pred cCCCCceEEeHHHHHH--HHhCCCCCccccCCCHHHHHHHH
Confidence 6778999999766664 45699888888999988875543
|
|
| >PRK02983 lysS lysyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-63 Score=563.93 Aligned_cols=300 Identities=20% Similarity=0.251 Sum_probs=251.0
Q ss_pred CCCCCCcccccccCcceEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHh
Q 013865 76 NDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~ 155 (435)
.|||||+|+.+++ ++++.+...|++|+|+|||+++|.+| |++|++|||++++||||++.+.. .+..+..|..
T Consensus 629 ~~pyp~~~~~~~~------~~~~~~~~~~~~V~v~Grv~~~R~~G-~~~F~~lrD~~g~iQ~v~~~~~~-~~~~~~~~~~ 700 (1094)
T PRK02983 629 VDPYPVGVPPTHT------VAEALDAPTGEEVSVSGRVLRIRDYG-GVLFADLRDWSGELQVLLDASRL-EQGSLADFRA 700 (1094)
T ss_pred CCCCCCCCcCccC------HHHHHHhcCCCEEEEEEEEEEEeeCC-CeEEEEEEeCCeeEEEEEECCcc-chhhHHHHHh
Confidence 3999999998755 44454457799999999999999999 89999999999999999986532 1234555667
Q ss_pred cCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccc
Q 013865 156 SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNN 234 (435)
Q Consensus 156 ~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~ 234 (435)
.|+.||+|.|+|++.+++ +|++||++++|.++++| .+||.... +..++++|+++
T Consensus 701 ~l~~gd~V~v~G~v~~t~------~ge~ei~~~~i~ll~k~~~plP~k~~-------------------~~~d~e~R~r~ 755 (1094)
T PRK02983 701 AVDLGDLVEVTGTMGTSR------NGTLSLLVTSWRLAGKCLRPLPDKWK-------------------GLTDPEARVRQ 755 (1094)
T ss_pred cCCCCCEEEEEEEEEEcC------CCCEEEEEeEEEEEeccCcCCCCccc-------------------cCCChhhcchh
Confidence 899999999999998743 47899999999999999 89997532 34788999999
Q ss_pred ccccccc-HHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHhhhcc
Q 013865 235 RVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSIC 311 (435)
Q Consensus 235 R~Ldlr~-~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~~i~ 311 (435)
||||||+ +.++++|++||.|+++||+||.++||+||+||+|++..++++++||.+ +|||.++||+||||||||++++
T Consensus 756 R~lDL~~n~~~~~~~r~Rs~i~~~iR~fl~~~gFlEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yLriSPELylKrLiv 835 (1094)
T PRK02983 756 RYLDLAVNPEARDLLRARSAVVRAVRETLVARGFLEVETPILQQVHGGANARPFVTHINAYDMDLYLRIAPELYLKRLCV 835 (1094)
T ss_pred hhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCEeeccCCCcccceeEeeecCCCccchhhcChHHHHHHHHh
Confidence 9999986 899999999999999999999999999999999996655445678954 7999999999999999999999
Q ss_pred CCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCC
Q 013865 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY 391 (435)
Q Consensus 312 ~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~ 391 (435)
||++||||||||||||+++ .||||||||||+||+|.| |+|+|+++|+||+++++.+.+..... .-+.......+++
T Consensus 836 gG~erVFEIg~~FRnE~~~-~rHnpEFTmLE~y~a~~d-y~d~m~l~E~li~~i~~~v~~~~~~~--~~~~~~~~~~i~~ 911 (1094)
T PRK02983 836 GGVERVFELGRNFRNEGVD-ATHNPEFTLLEAYQAHAD-YDTMRDLTRELIQNAAQAAHGAPVVM--RPDGDGVLEPVDI 911 (1094)
T ss_pred cccCceEEEcceecCCCCC-CCccccccchhhhhhcCC-HHHHHHHHHHHHHHHHHHHhCCcEEe--eCCcccccccccc
Confidence 9999999999999999984 699999999999999985 99999999999999999886542110 0010111223567
Q ss_pred CCCCceeeHHHHHHHHHHcCCCC
Q 013865 392 KPKTLRLTFEEGVQMLKDAGVEI 414 (435)
Q Consensus 392 ~~p~~rit~~eai~lL~~~g~~~ 414 (435)
..||+||||.||++ +..|+++
T Consensus 912 ~~pf~rit~~eai~--~~~g~~~ 932 (1094)
T PRK02983 912 SGPWPVVTVHDAVS--EALGEEI 932 (1094)
T ss_pred CCCceEEEHHHHHH--HHhCCCC
Confidence 78999999999997 3445443
|
|
| >PLN02903 aminoacyl-tRNA ligase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-62 Score=521.98 Aligned_cols=278 Identities=28% Similarity=0.407 Sum_probs=240.6
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.+.|++|...+.|++|+|+|||+++|.+| +++|++|||+++.+|||++.+. +.++++++..|+.||+|.|+|+|..
T Consensus 60 t~~cg~l~~~~~gk~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~---~~~~~~~~~~L~~esvV~V~G~V~~ 135 (652)
T PLN02903 60 SHLCGALSVNDVGSRVTLCGWVDLHRDMG-GLTFLDVRDHTGIVQVVTLPDE---FPEAHRTANRLRNEYVVAVEGTVRS 135 (652)
T ss_pred CCchhhcchhhCCCEEEEEEEEEEEecCC-CcEEEEEEcCCccEEEEEeCCc---cHHHHHHHhcCCCCCEEEEEEEEEe
Confidence 36789999999999999999999999999 8999999999999999997542 3567888899999999999999986
Q ss_pred CC-ccc--CCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHH
Q 013865 172 PD-VEI--KGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGI 247 (435)
Q Consensus 172 ~~-~~~--~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i 247 (435)
++ .++ +..+|++||.+++|+||++| .+||+.+.+... ....++.++|++|||||||++.++++
T Consensus 136 r~~~~~n~~~~tGeiEl~~~~i~VL~~a~~~lPf~i~~~~~-------------~~~~~~ee~Rl~~RyLDLR~~~~q~~ 202 (652)
T PLN02903 136 RPQESPNKKMKTGSVEVVAESVDILNVVTKSLPFLVTTADE-------------QKDSIKEEVRLRYRVLDLRRPQMNAN 202 (652)
T ss_pred CCCcCcCCCCCCCCEEEEEeEEEEEecCCCCCCcccccccc-------------ccccCChhhhhccceeecCCHHHHHH
Confidence 42 222 33458899999999999999 889988764211 01126789999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhc-CCeEEeeCceeeccCCCCCcceeEeccC--CCceeeccChHHHHhhhccCCCceeEEEecce
Q 013865 248 FRIQSQVGNIFRQFLLS-ENFVEIHTPKLIAGSSEGGSAVFRLDYK--GQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~-~gF~EV~TP~l~~~~~egga~~F~v~~~--~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~F 324 (435)
|++||.|++++|+||.+ +||+||+||+|+.+++||+.+.|...++ +..+||+||||||||++|++|++|||+|||||
T Consensus 203 lr~Rs~i~~~iR~fl~~~~gFiEVeTPiL~~st~eGardf~v~~~~~~g~~y~L~qSPQlykQ~Lm~~G~~RvFqIa~~F 282 (652)
T PLN02903 203 LRLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFYALPQSPQLFKQMLMVSGFDRYYQIARCF 282 (652)
T ss_pred HHHHHHHHHHHHHHHHhcCCeEEEECCeeccCCCCCCcccEEeeecCCCcccccCCCHHHHHHHHHhccCCcEEEEehhh
Confidence 99999999999999997 9999999999999889886654444443 56778999999999999999999999999999
Q ss_pred ecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHH
Q 013865 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404 (435)
Q Consensus 325 R~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai 404 (435)
|||++++.|| ||||||||||+|++ |+|+|+++|+||+++++.+.+ +++..||+||||.||+
T Consensus 283 R~E~~~t~Rh-pEFTqLE~E~sf~d-~~dvm~~~E~li~~v~~~~~~-----------------~~~~~PF~rity~eA~ 343 (652)
T PLN02903 283 RDEDLRADRQ-PEFTQLDMELAFTP-LEDMLKLNEDLIRQVFKEIKG-----------------VQLPNPFPRLTYAEAM 343 (652)
T ss_pred ccCCCCCCcc-cceeeeeeeecCCC-HHHHHHHHHHHHHHHHHHHhC-----------------CCCCCCceEEEHHHHH
Confidence 9999999888 99999999999996 999999999999999987652 1223599999999999
Q ss_pred H
Q 013865 405 Q 405 (435)
Q Consensus 405 ~ 405 (435)
+
T Consensus 344 ~ 344 (652)
T PLN02903 344 S 344 (652)
T ss_pred H
Confidence 7
|
|
| >TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-61 Score=513.47 Aligned_cols=270 Identities=27% Similarity=0.454 Sum_probs=235.3
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|+++...+.|++|+|+|||+++|.+| +++|++|||+++.||||++.+ .++++++..|+.||+|.|+|+|...
T Consensus 4 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-kl~Fi~LrD~sg~iQvv~~~~-----~~~~~~~~~L~~esvV~V~G~v~~r 77 (583)
T TIGR00459 4 HYCGQLRTEHLGQTVTLAGWVNRRRDLG-GLIFIDLRDRSGIVQVVCDPD-----ADALKLAKGLRNEDVVQVKGKVSAR 77 (583)
T ss_pred eeHhhcchhhCCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCC-----HHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 4677888788999999999999999999 799999999999999999753 4567788899999999999999853
Q ss_pred C-cccC--CCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 173 D-VEIK--GATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~-~~~~--~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
+ .++. .++|++||.+++|.+|++|..+|+.+.+ ..++.++|+++||||||++.++++|+
T Consensus 78 ~~~~~n~~~~tg~iEl~~~~i~iL~~a~~~P~~~~~------------------~~~~~~~Rl~~RyLDLR~~~~~~~lr 139 (583)
T TIGR00459 78 PEGNINRNLDTGEIEILAESITLLNKSKTPPLIIEK------------------TDAEEEVRLKYRYLDLRRPEMQQRLK 139 (583)
T ss_pred CccccCccCCCCcEEEEEeEEEEeecCCCCCCcccc------------------cccchhhhcccceEEcCCHHHHHHHH
Confidence 2 2222 4568999999999999999667876542 12567999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEecc--CCCce-eeccChHHHHhhhccCCCceeEEEecceec
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSA-CLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~-~L~~Spql~lq~~i~~g~~rVfeIgp~FR~ 326 (435)
+||.|++++|+||.++||+||+||+|+++++||+ .+|.+.+ ++..+ +|+||||||||+++++|++|||+|||||||
T Consensus 140 ~Rs~i~~~iR~ff~~~gFiEVeTP~L~~s~~eGa-r~f~vp~~~~~~~~y~L~qSpQlykq~l~v~G~ervfqI~~~FR~ 218 (583)
T TIGR00459 140 LRHKVTKAVRNFLDQQGFLEIETPMLTKSTPEGA-RDYLVPSRVHKGEFYALPQSPQLFKQLLMVSGVDRYYQIARCFRD 218 (583)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeccCCCCCC-cceeeeeecCCCceeecCCCHHHHHHHHHhcccCcEEEEcceeeC
Confidence 9999999999999999999999999998888875 4576654 45554 599999999999999999999999999999
Q ss_pred CCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHH
Q 013865 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 406 (435)
Q Consensus 327 E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~l 406 (435)
|++++.|| ||||||||||+|++ |+|+|+++|+||+++++.+.+ +++..||+||||.||++.
T Consensus 219 E~~~t~r~-pEFT~le~E~af~d-~~dvm~~~E~li~~v~~~v~~-----------------~~~~~pf~r~ty~ea~~~ 279 (583)
T TIGR00459 219 EDLRADRQ-PEFTQIDMEMSFMT-QEDVMELIEKLVSHVFLEVKG-----------------IDLKKPFPVMTYAEAMER 279 (583)
T ss_pred CCCCCCCC-cccCcceeeecCCC-HHHHHHHHHHHHHHHHHHHhC-----------------CCCCCCceEEEHHHHHHH
Confidence 99999888 99999999999996 999999999999999988763 223579999999999973
|
In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_bact, represents aspartyl-tRNA synthetases from the Bacteria and from mitochondria. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn). This model generates very low scores for the archaeal type of aspS and for asnS; scores between the trusted and noise cutoffs represent fragmentary sequences. |
| >COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-62 Score=498.71 Aligned_cols=297 Identities=23% Similarity=0.353 Sum_probs=252.7
Q ss_pred CCCCCCcccccccCcc----eEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH
Q 013865 76 NDPQTGKWSEAVNGRE----WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~----~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~ 151 (435)
.||||+.|..+.+..+ |.....-........|+|+|||+++|.+| |++|++|.|++++||++++.+. +..+.+
T Consensus 29 ~~~yp~~~~~~~~~~~l~~~~~~~~~~el~~~~~~v~vAGRi~~~R~~G-K~~F~~i~d~~gkiQ~yi~k~~--~~~~~~ 105 (502)
T COG1190 29 IDPYPNDFERTHTSADLREKYADKTKEELEALNIEVSVAGRIMTIRNMG-KASFADLQDGSGKIQLYVNKDE--VGEEVF 105 (502)
T ss_pred CCCCCCcCcccccHHHHHHHHhccchhhhhhccceeEEecceeeecccC-ceeEEEEecCCceEEEEEeccc--cchhhH
Confidence 5899999998876533 32221000111233499999999999999 8999999999999999999753 344555
Q ss_pred H-HHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcc
Q 013865 152 R-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQD 229 (435)
Q Consensus 152 k-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e 229 (435)
+ +.+.+..||||.|+|.+.++ .+|+++|.++++.+|++| .+||-. .++++++|
T Consensus 106 ~~~~~~~dlGDiigv~G~~~~T------~~GelSv~v~~~~lLsKsL~pLPeK-------------------~hgL~D~E 160 (502)
T COG1190 106 EALFKKLDLGDIIGVEGPLFKT------KTGELSVSVEELRLLSKSLRPLPEK-------------------FHGLTDKE 160 (502)
T ss_pred HHHHhccccCCEEeeeeeeeec------CCCceEEEEEEEeeecccCCCCChh-------------------hcCCccHH
Confidence 5 66789999999999999763 468999999999999999 999965 34568999
Q ss_pred cccccccccccc-HHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCc--ceeEe--ccCCCceeeccChHH
Q 013865 230 TRLNNRVIDIRT-LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFRL--DYKGQSACLAQSPQL 304 (435)
Q Consensus 230 trl~~R~Ldlr~-~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga--~~F~v--~~~~~~~~L~~Spql 304 (435)
+|||+|||||.. +.++.+|..||.|+++||+||+++||+||+||+|+. ..||| .||.+ |.++.++|||+||+|
T Consensus 161 ~RyR~RylDLi~N~e~r~~f~~Rs~ii~~iR~fl~~~gFlEVETP~lq~--i~GGA~ArPF~ThhNald~dlyLRIApEL 238 (502)
T COG1190 161 IRYRQRYLDLIVNPESRQTFIKRSKIIRAIREFLDDRGFLEVETPMLQP--IPGGAAARPFITHHNALDMDLYLRIAPEL 238 (502)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCeEeccccccc--cCCCcccccceeeecccCCceEEeeccHH
Confidence 999999999998 789999999999999999999999999999999985 44555 49988 569999999999999
Q ss_pred HHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcC
Q 013865 305 HKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY 384 (435)
Q Consensus 305 ~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~ 384 (435)
|||+||+|||+||||||++||||+. +.||||||||||+|+||+| |+|+|+++|+||++++..+.+.. .-.|
T Consensus 239 yLKRliVGG~erVfEIgr~FRNEGi-d~tHNPEFTmlE~Y~AYaD-y~D~m~ltE~Li~~~a~~v~gt~-------~v~y 309 (502)
T COG1190 239 YLKRLIVGGFERVFEIGRNFRNEGI-DTTHNPEFTMLEFYQAYAD-YEDLMDLTEELIKELAKEVNGTT-------KVTY 309 (502)
T ss_pred HHHHHHhcCchhheeeccccccCCC-ccccCcchhhHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcCCe-------EEEE
Confidence 9999999999999999999999996 8999999999999999997 99999999999999999987532 1234
Q ss_pred CCcccCCCCCCceeeHHHHHHHHHHcCCC
Q 013865 385 PFEPLKYKPKTLRLTFEEGVQMLKDAGVE 413 (435)
Q Consensus 385 ~~~~~~~~~p~~rit~~eai~lL~~~g~~ 413 (435)
+...++|.+||.||++.+|+. ...|+.
T Consensus 310 ~~~~id~~~pf~ri~m~dal~--e~~g~~ 336 (502)
T COG1190 310 GGQEIDFSKPFKRITMVDALK--EYLGVD 336 (502)
T ss_pred CCEeEecCCCeeeeehHHHHH--HHhCcc
Confidence 556689999999999999996 566764
|
|
| >PRK00476 aspS aspartyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-60 Score=511.19 Aligned_cols=277 Identities=29% Similarity=0.451 Sum_probs=241.7
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.++++...+.|++|+|+|||+++|.+| +++|++|||+++.||||++. . .++++++..|+.||+|.|+|+|...
T Consensus 6 ~~~~~l~~~~~g~~V~l~GwV~~~R~~g-~l~Fi~LrD~~g~iQ~v~~~----~-~~~~~~~~~l~~es~V~V~G~v~~~ 79 (588)
T PRK00476 6 HYCGELRESHVGQTVTLCGWVHRRRDHG-GLIFIDLRDREGIVQVVFDP----D-AEAFEVAESLRSEYVIQVTGTVRAR 79 (588)
T ss_pred eeHHHhhHHhCCCEEEEEEEEEEEEeCC-CeEEEEEEeCCceEEEEEeC----C-HHHHHHHhCCCCCCEEEEEEEEEec
Confidence 5677787788999999999999999999 89999999999999999974 1 4677888999999999999999864
Q ss_pred C-ccc--CCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 173 D-VEI--KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~-~~~--~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
+ ..+ +..+|++||.+++|.+|++|.++|+.+.+.. ..+.++|+++||||||++..+++|+
T Consensus 80 ~~~~~n~~~~~g~~El~~~~i~il~~a~~lP~~~~~~~-----------------~~~~~~Rl~~R~LdlR~~~~~~~l~ 142 (588)
T PRK00476 80 PEGTVNPNLPTGEIEVLASELEVLNKSKTLPFPIDDEE-----------------DVSEELRLKYRYLDLRRPEMQKNLK 142 (588)
T ss_pred CCcccCccCCCCcEEEEEeEEEEEecCCCCCCcccccc-----------------cCChhhhhhcceEeecCHHHHHHHH
Confidence 3 222 2236889999999999999977888764321 1568999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEec---cCCCceeeccChHHHHhhhccCCCceeEEEecceec
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~ 326 (435)
+||.|++++|+||.++||+||+||+|+.+++|| |.+|.+. +.+..+||+||||||||+++++|++|||+|||||||
T Consensus 143 ~Rs~i~~~iR~ff~~~gFiEV~TP~L~~s~~eg-a~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~ 221 (588)
T PRK00476 143 LRSKVTSAIRNFLDDNGFLEIETPILTKSTPEG-ARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRD 221 (588)
T ss_pred HHHHHHHHHHHHHHHCCCEEEECCeeecCCCCC-CccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeec
Confidence 999999999999999999999999999888876 5568876 678888999999999999999999999999999999
Q ss_pred CCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHH
Q 013865 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 406 (435)
Q Consensus 327 E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~l 406 (435)
|++++.||+ |||||||||+|.+ |+|+|+++|+||+++++.+.+. ++..||+||||.||++
T Consensus 222 E~~~~~r~~-EFt~le~e~af~~-~~dvm~~~E~li~~i~~~~~~~-----------------~~~~pf~r~ty~ea~~- 281 (588)
T PRK00476 222 EDLRADRQP-EFTQIDIEMSFVT-QEDVMALMEGLIRHVFKEVLGV-----------------DLPTPFPRMTYAEAMR- 281 (588)
T ss_pred CCCCCCcCc-ccccceeeecCCC-HHHHHHHHHHHHHHHHHHHhCc-----------------cCCCCceEEEHHHHHH-
Confidence 999999987 9999999999996 9999999999999999887521 1246899999999996
Q ss_pred HHHcCCCCC
Q 013865 407 LKDAGVEID 415 (435)
Q Consensus 407 L~~~g~~~~ 415 (435)
..|.+-|
T Consensus 282 --~yg~dkP 288 (588)
T PRK00476 282 --RYGSDKP 288 (588)
T ss_pred --HHCCCCC
Confidence 5565544
|
|
| >PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-61 Score=514.87 Aligned_cols=286 Identities=27% Similarity=0.380 Sum_probs=238.2
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|++|...+.|++|+|+|||+++|.+| +++|++|||+++.||||++.+. ++.++++++..|+.||+|.|+|+|..+
T Consensus 7 ~~cg~l~~~~~g~~V~l~GWV~~~R~~G-~l~FidLRD~~G~iQvV~~~~~--~~~~~~~~~~~L~~EsvV~V~G~v~~r 83 (706)
T PRK12820 7 SFCGHLSLDDTGREVCLAGWVDAFRDHG-ELLFIHLRDRNGFIQAVFSPEA--APADVYELAASLRAEFCVALQGEVQKR 83 (706)
T ss_pred cccccCChhhCCCEEEEEEEEEEEEcCC-CcEEEEEEeCCccEEEEEeCCc--CCHHHHHHHhcCCCCCEEEEEeEEecc
Confidence 6789999999999999999999999999 8999999999999999998542 466788899999999999999999874
Q ss_pred Cccc---CCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 173 DVEI---KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~~~~---~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
+... ...+|++||.+++|.||++|..+|+.+.+...+.. ..+..+..++.++|++|||||||++..+++|+
T Consensus 84 ~~~~~n~~~~tg~iEl~~~~i~iL~~a~~lP~~i~~~~~~~~------~~~~~~~~~~e~~Rl~~RyLDLR~~~~~~~lr 157 (706)
T PRK12820 84 LEETENPHIETGDIEVFVRELSILAASEALPFAISDKAMTAG------AGSAGADAVNEDLRLQYRYLDIRRPAMQDHLA 157 (706)
T ss_pred CccccCCCCCCCcEEEEeeEEEEEecCCCCCCCCcccccccc------cccccccccCHhhhhhCceeecCCHHHHHHHH
Confidence 3221 22358899999999999999667776554211000 00011223678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcce-eEeccCCCce-eeccChHHHHhhhccCCCceeEEEecceecC
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAV-FRLDYKGQSA-CLAQSPQLHKQMSICGDFGRVFETGPVFRAE 327 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~-F~v~~~~~~~-~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E 327 (435)
+||.|+++||+||.++||+||+||+|+.++++|+.+. +...+++..+ +|+||||||||+++++|++|||+||||||||
T Consensus 158 ~Rs~i~~~iR~fl~~~gFiEVeTPiL~~s~~eGAr~~~~p~~~~~~~~y~L~qSPQlykq~lm~~G~~rvfqI~~~FR~E 237 (706)
T PRK12820 158 KRHRIIKCARDFLDSRGFLEIETPILTKSTPEGARDYLVPSRIHPKEFYALPQSPQLFKQLLMIAGFERYFQLARCFRDE 237 (706)
T ss_pred HHHHHHHHHHHHHHHCCCEEEeCCccccCCCCCCcceEEeeecCCCcceecCCCHHHHHHHHHhccCCcEEEEechhcCC
Confidence 9999999999999999999999999999888876553 2334455554 5999999999999999999999999999999
Q ss_pred CCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHH
Q 013865 328 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 407 (435)
Q Consensus 328 ~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL 407 (435)
++++.|| ||||||||||+|++ ++|+|+++|+||+++++ +. + .++..||+||||.||++.+
T Consensus 238 ~~~t~r~-pEFT~LE~E~af~d-~~dvm~l~E~li~~v~~-~~----------~-------~~~~~pf~r~ty~eA~~~y 297 (706)
T PRK12820 238 DLRPNRQ-PEFTQLDIEASFID-EEFIFELIEELTARMFA-IG----------G-------IALPRPFPRMPYAEAMDTT 297 (706)
T ss_pred CCCCCcC-ccccccceeeccCC-HHHHHHHHHHHHHHHHH-hc----------C-------cCCCCCceEEEHHHHHHHh
Confidence 9988877 99999999999996 99999999999999985 11 0 1234699999999999744
|
|
| >COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-59 Score=482.21 Aligned_cols=273 Identities=30% Similarity=0.467 Sum_probs=246.3
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|++|..+++|++|+++||||+.|.+| +|+|++|||..|.+|||++.. .+++.++.+..|+.|++|.|+|+|...
T Consensus 4 ~~cg~l~~~~vG~~V~L~GWV~r~Rd~G-gliFiDLRDr~GivQvv~~~~---~~~~~~~~a~~lr~E~vi~V~G~V~~R 79 (585)
T COG0173 4 HYCGELRESHVGQTVTLSGWVHRRRDHG-GLIFIDLRDREGIVQVVFDPE---DSPEAFEVASRLRNEFVIQVTGTVRAR 79 (585)
T ss_pred eeccccCHHHCCCEEEEEeeeeeccccC-CeEEEEcccCCCeEEEEECCc---cCHHHHHHHHhcCceEEEEEEEEEEec
Confidence 6788999999999999999999999999 799999999999999999853 367888999999999999999988753
Q ss_pred Cc---ccCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 173 DV---EIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~~---~~~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
+. ..+-.||++||++++|.||+.|..|||.+.|.. .++.|+||.|||||||.+.++..++
T Consensus 80 ~e~~~N~~l~TGeiEv~a~~i~vln~s~~lPf~i~d~~-----------------~~~Ee~RLkYRyLDLRR~~m~~~l~ 142 (585)
T COG0173 80 PEGTINPNLPTGEIEVLAEEIEVLNASKTLPFQIEDET-----------------NASEEIRLKYRYLDLRRPEMQKNLK 142 (585)
T ss_pred CccccCCCCCcceEEEEeeeEEEEecCCCCCcCCCCCC-----------------CcchhhhhhhhhhhhcCHHHHHHHH
Confidence 32 234567999999999999999999999987631 2678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEec---cCCCceeeccChHHHHhhhccCCCceeEEEecceec
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD---YKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~---~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~ 326 (435)
+||.++.++|+||+++||+||+||+|+.+++|| |..|-|. +-|..+-|.||||||||.||++||+|+|+|++|||+
T Consensus 143 lR~kv~~~iR~~ld~~gF~EiETPiLtkSTPEG-ARDfLVPSRv~~G~FYALPQSPQlfKQLLMvsGfdRYyQIarCFRD 221 (585)
T COG0173 143 LRSKVTKAIRNFLDDQGFLEIETPILTKSTPEG-ARDFLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRD 221 (585)
T ss_pred HHHHHHHHHHHHHhhcCCeEeecCccccCCCcc-ccccccccccCCCceeecCCCHHHHHHHHHHhcccceeeeeeeecc
Confidence 999999999999999999999999999988885 8888885 467889999999999999999999999999999999
Q ss_pred CCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHH
Q 013865 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 406 (435)
Q Consensus 327 E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~l 406 (435)
|+.+..|. |||||+|+||+|.+ -+|+|+++|+|+.++|+.+.+ +++..||+||||.||+.-
T Consensus 222 EDlRaDRQ-PEFTQiD~EmSF~~-~edv~~~~E~l~~~vf~~~~~-----------------i~l~~pFprmtY~eAm~~ 282 (585)
T COG0173 222 EDLRADRQ-PEFTQIDLEMSFVD-EEDVMELIEKLLRYVFKEVKG-----------------IELKTPFPRMTYAEAMRR 282 (585)
T ss_pred cccccccC-CcceeEeEEeecCC-HHHHHHHHHHHHHHHHHHhcC-----------------CccCCCcccccHHHHHHH
Confidence 99999999 99999999999997 799999999999999998753 233459999999999963
|
|
| >KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-57 Score=446.75 Aligned_cols=298 Identities=27% Similarity=0.404 Sum_probs=263.4
Q ss_pred cCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCC--eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCccc
Q 013865 99 NGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERV--STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (435)
Q Consensus 99 ~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~--~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~ 176 (435)
.....|++++|.|||.++|.+| +.+|++|.||+ ..+|||++. ...+.+..|+.|.|.|.+..+
T Consensus 15 ~~~~~g~~~~i~GWvKsvr~~~-~~~Fl~i~DGs~~~~lQvVv~~----------~~~q~la~Gt~i~~~g~l~~~---- 79 (446)
T KOG0554|consen 15 GHPRAGDTISIGGWVKSVRKLK-KVTFLDINDGSCPSPLQVVVDS----------EQSQLLATGTCISAEGVLKVS---- 79 (446)
T ss_pred cCCCCCCceeecchhhhccccc-ceEEEEecCCCCCcceEEEech----------HHhhhccccceEEEEeeEEec----
Confidence 4456799999999999999999 78999999997 489999985 234679999999999999876
Q ss_pred CCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHHH
Q 013865 177 KGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVG 255 (435)
Q Consensus 177 ~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~ 255 (435)
++..+++|+.+.+|.+++.+ +.+|++.+. ..++...+.-||+.||....+++|+||.+.
T Consensus 80 ~~~~q~iel~~eki~~vG~v~~~ypl~Kk~--------------------lt~e~LR~~~HLR~Rt~~~~av~RvRs~~~ 139 (446)
T KOG0554|consen 80 KGAKQQIELNAEKIKVVGTVDESYPLQKKK--------------------LTPEMLRDKLHLRSRTAKVGAVLRVRSALA 139 (446)
T ss_pred cchheeeeeeeeEEEEEeecCCCCCCcccc--------------------CCHHHHhhcccccchhhHHHHHHHHHHHHH
Confidence 46678999999999999999 789987553 345666688899999999999999999999
Q ss_pred HHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--------ccCCCceeeccChHHHHhhhccCCCceeEEEecceecC
Q 013865 256 NIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--------DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 327 (435)
Q Consensus 256 ~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--------~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E 327 (435)
.++|.||.++||++|+||+|+.++|||++++|.| +|||+++||++|.|||++ +++.++.|||.+||+||||
T Consensus 140 ~a~h~ffq~~~F~~i~tPiiTt~DCEGaGE~F~vtt~~d~~~~fFg~p~fLTVSgQLhlE-~~a~~LsrvyTfgP~FRAE 218 (446)
T KOG0554|consen 140 FATHSFFQSHDFTYINTPIITTNDCEGAGEVFQVTTLTDYSKDFFGRPAFLTVSGQLHLE-AMACALSRVYTFGPTFRAE 218 (446)
T ss_pred HHHHHHHHHcCceEecCcEeeccCCCCCcceEEEEecCcccccccCCceEEEEeceehHH-HHHhhhcceEeeccceecc
Confidence 9999999999999999999999999999999987 589999999999999999 4567899999999999999
Q ss_pred CCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcc-----cCCCCCCceeeHHH
Q 013865 328 DSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP-----LKYKPKTLRLTFEE 402 (435)
Q Consensus 328 ~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~-----~~~~~p~~rit~~e 402 (435)
+|+++|||.||||+|.|+||++.++|+|.++|.+++++++.+.++|.++++...+...... ..+..+|.||||.|
T Consensus 219 nS~tsRHLAEFwMlEaE~AF~~sl~d~m~~~e~~~K~mik~llek~~edmel~~k~~~~~~~~rl~~~~~~~~~~~tYte 298 (446)
T KOG0554|consen 219 NSHTSRHLAEFWMLEAELAFAESLDDLMSCAEAYIKHMIKYLLEKCIEDMELMHKNEDPGSIDRLELVAKENLLRITYTE 298 (446)
T ss_pred cCCchhHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhheeccccCCCccchhhhhccchhhhccHHH
Confidence 9999999999999999999998899999999999999999999999988876555432111 11234689999999
Q ss_pred HHHHHHHcC-----CCCCCCCCCCcHHHHHHHHHh
Q 013865 403 GVQMLKDAG-----VEIDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 403 ai~lL~~~g-----~~~~~~~dl~te~E~~L~~~v 432 (435)
||++|.+++ .++.||.||++|||++|++..
T Consensus 299 Aie~L~~a~t~~fk~~~kwG~~l~~ehe~yL~~~~ 333 (446)
T KOG0554|consen 299 AIELLQKAVTKKFKTPPKWGIDLSTEHEKYLVEEC 333 (446)
T ss_pred HHHHHHHhcccccccCcccccccchhhHHHHHHHh
Confidence 999999976 357899999999999999875
|
|
| >KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-56 Score=439.55 Aligned_cols=368 Identities=23% Similarity=0.307 Sum_probs=285.8
Q ss_pred CCCccccChhHHHHHHHHHHHHHHHHHHHH----HHHHHhhcc-ccccCCCCCCcccCChhhhhccCCCCCCcccccccC
Q 013865 15 DSSSQSISKKAAKKEAAKKAKEERRKEAEA----AASAASALS-IEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNG 89 (435)
Q Consensus 15 ~~~~~~~sk~~lkk~~k~~~k~~kka~~~~----~~~~~~~~~-~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~ 89 (435)
++.=++.||++|||.+|.=..+.+|.+++. ++..+..++ ++.....-..+-.+ +.
T Consensus 50 ~e~~e~~sk~~Lkk~~kg~~~~~~k~~k~~~~ea~~~ek~~~~le~a~ki~ised~sl--------------------p~ 109 (545)
T KOG0555|consen 50 SEEYEPISKSALKKIKKGWVRECKKSAKASQKEAEASEKREKNLEEAKKITISEDKSL--------------------PA 109 (545)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhHHhhhcccccCCCCC--------------------ch
Confidence 334468999999999987766665554321 111111110 01111111112122 22
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEE
Q 013865 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v 169 (435)
.+-++|.+. .+..|+.|.|.||||+.|.+ ++|+||+|||+++.||||++.+-. .+- + +-.|+.+|.|.|.|++
T Consensus 110 ak~iki~~s-~~~r~qrVkv~gWVhrlR~q-k~l~FivLrdg~gflqCVl~~kl~-~~y---d-~~~Ls~essv~vYG~i 182 (545)
T KOG0555|consen 110 AKKIKIYDS-TENRGQRVKVFGWVHRLRRQ-KSLIFIVLRDGTGFLQCVLSDKLC-QSY---D-ALTLSTESSVTVYGTI 182 (545)
T ss_pred hheeeeccc-ccccCceEEeehhhHhhhhc-CceEEEEEecCCceEEEEEcchhh-hhh---c-cccccccceEEEEEEE
Confidence 344566553 35789999999999999999 599999999999999999985321 111 1 1258999999999999
Q ss_pred ecCCcccCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 170 SVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 170 ~~~~~~~~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
++.+. .|++.++.||.|.-+.|++.++.--+... .. --.+.+..|+||||-+|....+.+++
T Consensus 183 ~~~p~-GK~apgghEl~vdy~Eiig~Apag~~~n~---ln--------------e~s~~~~~LdnrHl~iRge~~s~vLK 244 (545)
T KOG0555|consen 183 KKLPE-GKSAPGGHELNVDYWEIIGLAPAGGFDNP---LN--------------EESDVDVLLDNRHLVIRGENASKVLK 244 (545)
T ss_pred ecCcC-CCCCCCCceEEeeeeeeecccCCCccccc---cc--------------ccCCcceEeccceeEEechhHHHHHH
Confidence 87643 34567899999999999988722111100 00 01466788999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCC
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS 329 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s 329 (435)
+|+.+++++|++|.++|+.||.+|.|.....|||+..|+++|||.++||+||.||||+.++. .+++||+|.++||||.|
T Consensus 245 ~Ra~~lr~~Rd~y~~~~ytEVtPPtmVQTQVEGGsTLFkldYyGEeAyLTQSSQLYLEtclp-Algdvy~I~~SyRAEkS 323 (545)
T KOG0555|consen 245 ARAALLRAMRDHYFERGYTEVTPPTMVQTQVEGGSTLFKLDYYGEEAYLTQSSQLYLETCLP-ALGDVYCIQQSYRAEKS 323 (545)
T ss_pred HHHHHHHHHHHHHHhcCceecCCCceEEEEecCcceEEeecccCchhhccchhHHHHHHhhh-hcCceeEecHhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999998875 59999999999999999
Q ss_pred CCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhH-HHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHH
Q 013865 330 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCK-KELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 330 ~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~-~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~ 408 (435)
.|.|||+|||++|+|++|.+ ++|+|+.+|.|++..+..+.+.-. ..+..++..+.. ...||.||.|+|||+.|+
T Consensus 324 rTRRHLsEytHVEaE~aflt-fd~ll~~iE~lvc~~vdr~l~dp~~~li~~lnP~f~~----P~~PFkRm~Y~dAI~wLk 398 (545)
T KOG0555|consen 324 RTRRHLSEYTHVEAECAFLT-FDDLLDRIEALVCDSVDRLLEDPIAPLIKQLNPDFKA----PKRPFKRMNYSDAIEWLK 398 (545)
T ss_pred hhhhhhhhheeeeeeccccc-HHHHHHHHHHHHHHHHHHHHhChhhhhHHHhCCCCCC----CCCchhcCCHHHHHHHHH
Confidence 99999999999999999997 999999999999999999876533 345555443322 135999999999999999
Q ss_pred HcCCC------CCCCCCCCcHHHHHHHHHhh
Q 013865 409 DAGVE------IDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 409 ~~g~~------~~~~~dl~te~E~~L~~~vk 433 (435)
++++. .+.|+|+....||++.+-|.
T Consensus 399 e~~vk~edg~~fefGdDI~eAaER~mtdtIg 429 (545)
T KOG0555|consen 399 EHDVKKEDGTDFEFGDDIPEAAERKMTDTIG 429 (545)
T ss_pred hcCCcCccCcccccccchhhHHHHhhhhhcC
Confidence 98654 56679999999999988764
|
|
| >cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-50 Score=404.52 Aligned_cols=206 Identities=47% Similarity=0.715 Sum_probs=189.8
Q ss_pred CCccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHH
Q 013865 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLH 305 (435)
Q Consensus 226 ~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~ 305 (435)
+++++|++|||||+|++..++++++||.|++++|+||.++||+||+||+|+++++||++++|.++|||.++||++|||||
T Consensus 2 ~~~~~~~~~r~l~lr~~~~~~~~~~rs~i~~~ir~~f~~~gf~eV~TP~l~~~~~e~~~~~f~~~~~~~~~yL~~Spql~ 81 (322)
T cd00776 2 ANLETLLDNRHLDLRTPKVQAIFRIRSEVLRAFREFLRENGFTEVHTPKITSTDTEGGAELFKVSYFGKPAYLAQSPQLY 81 (322)
T ss_pred CChHhhhhCceeeeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEeeCCceecCCCCccCCccccccCCCcceecCCHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCC
Q 013865 306 KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP 385 (435)
Q Consensus 306 lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~ 385 (435)
||++++| ++|||+||||||||+++++|||||||||||||+|+++|+|+|+++|+||+++++.+.+.|..++..++ .+.
T Consensus 82 lk~l~~~-~~~vf~i~~~FR~E~~~~~rHl~EFtmlE~e~~~~~~~~dlm~~~e~ll~~~~~~l~~~~~~~~~~~~-~~~ 159 (322)
T cd00776 82 KEMLIAA-LERVYEIGPVFRAEKSNTRRHLSEFWMLEAEMAFIEDYNEVMDLIEELIKYIFKRVLERCAKELELVN-QLN 159 (322)
T ss_pred HHHHHHh-hhhhEEeccccccCCCCcCCCcceeeccceeeeccCCHHHHHHHHHHHHHHHHHHHHhccHHHHhhhh-ccC
Confidence 9999987 99999999999999998999999999999999999569999999999999999999999988876642 222
Q ss_pred CcccCCCCCCceeeHHHHHHHHHHcCC--CCCCCCCCCcHHHHHHHHHhh
Q 013865 386 FEPLKYKPKTLRLTFEEGVQMLKDAGV--EIDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 386 ~~~~~~~~p~~rit~~eai~lL~~~g~--~~~~~~dl~te~E~~L~~~vk 433 (435)
.....+..||+||||.||+++|.+.|. +++|++||++++|++|+++++
T Consensus 160 ~~~~~~~~~~~rit~~eA~~~l~~~~~~~~~~~~~~l~~~~e~~l~~~~~ 209 (322)
T cd00776 160 RELLKPLEPFPRITYDEAIELLREKGVEEEVKWGEDLSTEHERLLGEIVK 209 (322)
T ss_pred cccccCCCCceEEEHHHHHHHHHHcCCCCCCCccchhcHHHHHHHHHHhC
Confidence 223345679999999999999999987 788999999999999999873
|
Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=384.90 Aligned_cols=282 Identities=25% Similarity=0.390 Sum_probs=239.4
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.+.|++|....+|+.|.++|||.-.|.+| .+.|..|||..|.||+.++.+.. . ...+....++.||+|.|.|+|..
T Consensus 35 t~~~~el~~~~vg~kv~l~GWl~~~~~~k-~~~F~~LRD~~G~vq~lls~~s~--~-l~~~~~~~v~~e~vv~v~gtvv~ 110 (628)
T KOG2411|consen 35 TSLCGELSVNDVGKKVVLCGWLELHRVHK-MLTFFNLRDAYGIVQQLLSPDSF--P-LAQKLENDVPLEDVVQVEGTVVS 110 (628)
T ss_pred hccchhhccCccCCEEEEeeeeeeeeccc-cceEEEeeccCcceEEEecchhh--h-HHhcccCCCChhheEeeeeeEec
Confidence 36788888889999999999999999996 89999999999999999885421 0 11233456899999999999874
Q ss_pred -CC--cccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHH
Q 013865 172 -PD--VEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGI 247 (435)
Q Consensus 172 -~~--~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i 247 (435)
|. .+.+..+|.+|+..+++++++++ ..+|+.+.|....+ -+.+..+||++||||||.+..|..
T Consensus 111 Rp~~sin~km~tg~vev~~e~~~vln~~~~~~p~~v~df~~ld-------------~~~~er~rl~~RyldLR~~kmq~n 177 (628)
T KOG2411|consen 111 RPNESINSKMKTGFVEVVAEKVEVLNPVNKKLPFEVTDFKELD-------------DLAGERIRLRFRYLDLRRPKMQNN 177 (628)
T ss_pred ccccccCccccccceEEEeeeeEEecCccCCCccchhhhhhhh-------------ccccccccchhhhhhhccHHHHHH
Confidence 33 34456678999999999999999 99999988764211 125678899999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcC-CeEEeeCceeeccCCCCCcceeEecc---CCCceeeccChHHHHhhhccCCCceeEEEecc
Q 013865 248 FRIQSQVGNIFRQFLLSE-NFVEIHTPKLIAGSSEGGSAVFRLDY---KGQSACLAQSPQLHKQMSICGDFGRVFETGPV 323 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~-gF~EV~TP~l~~~~~egga~~F~v~~---~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~ 323 (435)
+|+||.+...+|+||.++ ||+||+||+|-.. +.|||..|.|.- -|..+-|.||||.||||||+||++|+|+|++|
T Consensus 178 LrlRS~~v~~iR~yl~n~~GFvevETPtLFkr-TPgGA~EFvVPtr~~~g~FYaLpQSPQQfKQlLMvsGidrYyQiARC 256 (628)
T KOG2411|consen 178 LRLRSNVVKKIRRYLNNRHGFVEVETPTLFKR-TPGGAREFVVPTRTPRGKFYALPQSPQQFKQLLMVSGIDRYYQIARC 256 (628)
T ss_pred HHHHHHHHHHHHHHHhhhcCeeeccCcchhcc-CCCccceeecccCCCCCceeecCCCHHHHHHHHHHhchhhHHhHHhh
Confidence 999999999999999875 7999999999875 556788898854 36788899999999999999999999999999
Q ss_pred eecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHH
Q 013865 324 FRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403 (435)
Q Consensus 324 FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~ea 403 (435)
||+|++...|. |||||+|+||+|.+ .+|+|.++|+++.+++...... ....||+||||.+|
T Consensus 257 fRDEdlR~DRQ-PEFTQvD~EMsF~~-~~dim~liEdll~~~ws~~k~~-----------------~l~~PF~riTY~~A 317 (628)
T KOG2411|consen 257 FRDEDLRADRQ-PEFTQVDMEMSFTD-QEDIMKLIEDLLRYVWSEDKGI-----------------QLPVPFPRITYADA 317 (628)
T ss_pred hcccccCcccC-CcceeeeeEEeccC-HHHHHHHHHHHHHHhchhhcCC-----------------CCCCCcccccHHHH
Confidence 99999988888 99999999999997 7999999999999999875431 23469999999999
Q ss_pred HHHHHHcCCC
Q 013865 404 VQMLKDAGVE 413 (435)
Q Consensus 404 i~lL~~~g~~ 413 (435)
++ ..|.+
T Consensus 318 m~---~YG~D 324 (628)
T KOG2411|consen 318 MD---KYGSD 324 (628)
T ss_pred HH---HhCCC
Confidence 97 55544
|
|
| >PRK06462 asparagine synthetase A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-48 Score=389.22 Aligned_cols=201 Identities=29% Similarity=0.427 Sum_probs=181.5
Q ss_pred CCccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCC---C----cceeEeccCCCceee
Q 013865 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG---G----SAVFRLDYKGQSACL 298 (435)
Q Consensus 226 ~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~eg---g----a~~F~v~~~~~~~~L 298 (435)
.+.++|++||+||+|++..+++|++||.|++++|+||.++||+||+||+|++++++| | +..|.++|||+++||
T Consensus 8 ~~~~~~~~~r~~~lr~~~~~~il~~Rs~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL 87 (335)
T PRK06462 8 KEYEEFLRMSWKHISSEKYRKVLKVQSSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYL 87 (335)
T ss_pred cchhhhhhhHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceee
Confidence 578999999999999999999999999999999999999999999999999876653 2 335778899999999
Q ss_pred ccChHHHHhhhccCCCceeEEEecceecCCCCC--CccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHH
Q 013865 299 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKE 376 (435)
Q Consensus 299 ~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~ 376 (435)
++|||||||++ ++|++|||+||||||||++++ +|||||||||||||+|++ |+|+|+++|+||++++..+.++|..+
T Consensus 88 ~~Spql~k~ll-~~g~~rVfeI~p~FR~E~~~~~~~rHl~EFtmlE~e~~~~d-~~dlm~~~e~lv~~i~~~~~~~~~~~ 165 (335)
T PRK06462 88 ADSMILHKQLA-LRMLGKIFYLSPNFRLEPVDKDTGRHLYEFTQLDIEIEGAD-LDEVMDLIEDLIKYLVKELLEEHEDE 165 (335)
T ss_pred ccCHHHHHHHH-HhhcCcEEEEeccccCCCCCCCCCCCCCchheeeehhhcCC-HHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence 99999998865 567999999999999999977 799999999999999985 99999999999999999999999988
Q ss_pred HHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHh
Q 013865 377 LEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 377 l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~g~~~~~~~dl~te~E~~L~~~v 432 (435)
|..++...+ .+..||+||||.||+++|++.|.+.++++||++++|++|++++
T Consensus 166 i~~~~~~~~----~~~~p~~rit~~eA~~~l~~~~~~~~~~~~l~~~~E~~l~~~~ 217 (335)
T PRK06462 166 LEFFGRDLP----HLKRPFKRITHKEAVEILNEEGCRGIDLEELGSEGEKSLSEHF 217 (335)
T ss_pred HHhcCCccc----cCCCCCeEEEHHHHHHHHHhcCCCcchHHHHhHHHHHHHHHHh
Confidence 877655332 2356999999999999999999888888999999999999876
|
|
| >PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-47 Score=381.49 Aligned_cols=194 Identities=37% Similarity=0.580 Sum_probs=165.7
Q ss_pred CccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEec-----cCCCceeeccC
Q 013865 227 NQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLD-----YKGQSACLAQS 301 (435)
Q Consensus 227 ~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~-----~~~~~~~L~~S 301 (435)
++|+|++|||||+|++..+++|++||.|+++||+||.++||+||+||+|++++++||+++|.|+ |||.++||++|
T Consensus 1 ~~e~~~~~r~l~~r~~~~~~~~~~rs~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~S 80 (335)
T PF00152_consen 1 DEETRLDNRHLDLRTPAMSSILRIRSAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQS 80 (335)
T ss_dssp -HHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SS
T ss_pred ChhhhhhccceeccCcHHHHHHHHHHHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcC
Confidence 3689999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred hHHHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhh
Q 013865 302 PQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVA 381 (435)
Q Consensus 302 pql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~ 381 (435)
||||||+++++|++|||+||||||||+++|.|||||||||||||+|++ ++++|+++|+||+++++.+..+.. .+ .+
T Consensus 81 pql~~k~ll~~g~~~vf~i~~~FR~E~~~~~rHl~EFtmLE~e~a~~~-~~~lm~~~e~li~~i~~~~~~~~~-~~-~~- 156 (335)
T PF00152_consen 81 PQLYLKRLLAAGLERVFEIGPCFRNEESRTRRHLPEFTMLEWEMAFAD-YDDLMDLIEELIKYIFKELLENAK-EL-SL- 156 (335)
T ss_dssp SHHHHHHHHHTTHSEEEEEEEEE-BSSSCBTTBSSEEEEEEEEEETSS-HHHHHHHHHHHHHHHHHHHHHHHH-HH-HT-
T ss_pred hHHHHhhhccccchhhhheecceeccCcccccchhhhhhhhhccccCc-HHHhHHHHHHHHHHHHHHHhccCc-cc-cc-
Confidence 999999999999999999999999999999999999999999999997 889999999999999999976522 21 11
Q ss_pred hcCCCcccCCCCCCceeeHHHHHHHHHHcCCCCCC-----------------CCCCCcHHHHHHHH
Q 013865 382 KQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDP-----------------LGDLNTESERKLGQ 430 (435)
Q Consensus 382 ~~~~~~~~~~~~p~~rit~~eai~lL~~~g~~~~~-----------------~~dl~te~E~~L~~ 430 (435)
.+++..||+||||.||++++...+.++.. +.+|++..|+.|+.
T Consensus 157 ------~~~~~~~f~ri~~~ea~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~e~~L~~ 216 (335)
T PF00152_consen 157 ------NIDLPKPFPRITYEEAFEIYGGDKPDLRFDEELDDLAEIEELEFEVGRLLSEEVEPYLVE 216 (335)
T ss_dssp ------CEESSSS-EEEEHHHHHHHHHHTTTTTTTCHHHHHHHHHHHTTHHCHHHHHHHHHHHHHH
T ss_pred ------cccccCCceEeeehHHHHHhhcccccchhHHHHHHHHHHhcccchHHHHHHHHHHHHhhh
Confidence 23445689999999999999987755443 34577778877763
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B .... |
| >TIGR00462 genX lysyl-tRNA synthetase-like protein GenX | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=337.54 Aligned_cols=163 Identities=21% Similarity=0.306 Sum_probs=148.0
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeecc-CCCCCcceeEeccCC-----CceeeccChHHHHhhhccCCCceeEEEe
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAG-SSEGGSAVFRLDYKG-----QSACLAQSPQLHKQMSICGDFGRVFETG 321 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~-~~egga~~F~v~~~~-----~~~~L~~Spql~lq~~i~~g~~rVfeIg 321 (435)
+++||.|++++|+||.++||+||+||+|+++ .+|+|+++|+++||+ +++||+||||||+|+++++|++|||+||
T Consensus 1 l~~rs~i~~~ir~~f~~~gF~EV~TP~l~~~~~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfeig 80 (304)
T TIGR00462 1 LRARARLLAAIRAFFAERGVLEVETPLLSPAPVTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQIC 80 (304)
T ss_pred ChHHHHHHHHHHHHHHHCCCEEEECCeEecCCCCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEEc
Confidence 4789999999999999999999999999987 588899999999876 6999999999999999999999999999
Q ss_pred cceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHH
Q 013865 322 PVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFE 401 (435)
Q Consensus 322 p~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~ 401 (435)
||||||++ ++||||||||||||++|.+ |+|+|+++|+||++++..+ ..||+||||.
T Consensus 81 p~FRaE~~-~~rHl~EFtmLE~e~~~~d-~~d~m~~~e~li~~i~~~~----------------------~~~~~~it~~ 136 (304)
T TIGR00462 81 KVFRNGER-GRRHNPEFTMLEWYRPGFD-YHDLMDEVEALLQELLGDP----------------------FAPWERLSYQ 136 (304)
T ss_pred CceeCCCC-CCCcccHHHhHHHHHHcCC-HHHHHHHHHHHHHHHHHhc----------------------CCCcEEEEHH
Confidence 99999998 6899999999999999985 9999999999999998751 2467888888
Q ss_pred HHHH-----------------HHHHcCCCCCCCCCCCcHHHHHHHHHhhc
Q 013865 402 EGVQ-----------------MLKDAGVEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 402 eai~-----------------lL~~~g~~~~~~~dl~te~E~~L~~~vke 434 (435)
||++ ++++.|+++++++|+++.+|+.|+++|+.
T Consensus 137 ea~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~d~~~~~e~~l~~~ie~ 186 (304)
T TIGR00462 137 EAFLRYAGIDPLTASLDELAAAAAAHGVRASEEDDRDDLLDLLFSEKVEP 186 (304)
T ss_pred HHHHHHhCCCcccCCHHHHHHHHHHcCCCCCCCCChhHHHHHHHHHHHHH
Confidence 8754 67788888888899999999999999864
|
Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown. |
| >cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=333.20 Aligned_cols=178 Identities=24% Similarity=0.370 Sum_probs=149.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHhhhccCCCceeEE
Q 013865 242 LANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQMSICGDFGRVFE 319 (435)
Q Consensus 242 ~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq~~i~~g~~rVfe 319 (435)
+.++++|++||.|+++||+||.++||+||+||+|+++.+++++.+|.+ +||+.++||+||||||+|+++++|++|||+
T Consensus 2 ~~~~~~l~~Rs~i~~~iR~ff~~~gf~EV~TP~L~~~~~~~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf~ 81 (329)
T cd00775 2 EEVRQTFIVRSKIISYIRKFLDDRGFLEVETPMLQPIAGGAAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVYE 81 (329)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCCccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEEE
Confidence 578999999999999999999999999999999998766667789988 789999999999999999999999999999
Q ss_pred EecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceee
Q 013865 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT 399 (435)
Q Consensus 320 Igp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit 399 (435)
||||||||++ +.|||||||||||||+|++ |+|+|+++|+||+++++.+.+.+ ++... ...+.+..||+|||
T Consensus 82 i~~~FR~E~~-~~rHl~EFt~le~e~~~~~-~~~~m~~~e~li~~i~~~~~~~~--~~~~~-----~~~~~~~~pf~rit 152 (329)
T cd00775 82 IGRNFRNEGI-DLTHNPEFTMIEFYEAYAD-YNDMMDLTEDLFSGLVKKINGKT--KIEYG-----GKELDFTPPFKRVT 152 (329)
T ss_pred EeccccCCCC-CCCCCCceEEEEEeeecCC-HHHHHHHHHHHHHHHHHHHhCCc--eeecC-----CccccCCCCceEEE
Confidence 9999999998 6899999999999999985 99999999999999999887653 22222 12233446999999
Q ss_pred HHHHHHHHHHcCCCCCCCCCCCcH-HHHHHHH
Q 013865 400 FEEGVQMLKDAGVEIDPLGDLNTE-SERKLGQ 430 (435)
Q Consensus 400 ~~eai~lL~~~g~~~~~~~dl~te-~E~~L~~ 430 (435)
|.||++. ..|+++.+.++..++ .++.++.
T Consensus 153 y~eA~~~--~~g~~~~~~~~~~~~~~~~~~~~ 182 (329)
T cd00775 153 MVDALKE--KTGIDFPELDLEQPEELAKLLAK 182 (329)
T ss_pred HHHHHHH--HhCCCcccccccCCHHHHHHHHH
Confidence 9999984 468776555555443 4444444
|
Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. |
| >cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-37 Score=301.98 Aligned_cols=152 Identities=30% Similarity=0.474 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccC--CCceeeccChHHHHhhhccCCCceeEEEeccee
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYK--GQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~--~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR 325 (435)
|++||.|++.+|+||.++||+||+||+|+++.+++|+++|.++|+ |+++||++|||||+|+++++|++|||+||||||
T Consensus 1 ~~~rs~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR 80 (269)
T cd00669 1 FKVRSKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVKYNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFR 80 (269)
T ss_pred CcHHHHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEeeecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEeccee
Confidence 579999999999999999999999999998889999999999998 999999999999999999999999999999999
Q ss_pred cCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHH
Q 013865 326 AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 405 (435)
Q Consensus 326 ~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~ 405 (435)
+| +.|.||++||||||+||+|. +|+|+|+++|+||+++++.+.+++..++.. ...++..||+||||.||++
T Consensus 81 ~e-~~~~~hl~EF~~le~e~~~~-~~~dvm~~~e~lv~~i~~~~~~~~~~~~~~-------~~~~~~~~~~rit~~ea~~ 151 (269)
T cd00669 81 NE-DLRARHQPEFTMMDLEMAFA-DYEDVIELTERLVRHLAREVLGVTAVTYGF-------ELEDFGLPFPRLTYREALE 151 (269)
T ss_pred CC-CCCCCcccceeEEEEEEecC-CHHHHHHHHHHHHHHHHHHHhccccccccc-------cccccCCCceEeeHHHHHH
Confidence 99 57999999999999999999 499999999999999999998877665421 1223457999999999999
Q ss_pred HHH
Q 013865 406 MLK 408 (435)
Q Consensus 406 lL~ 408 (435)
+|.
T Consensus 152 ~~~ 154 (269)
T cd00669 152 RYG 154 (269)
T ss_pred HhC
Confidence 885
|
This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-36 Score=295.58 Aligned_cols=151 Identities=32% Similarity=0.514 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccC---CCceeeccChHHHHhhhccCCCceeEEEecce
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYK---GQSACLAQSPQLHKQMSICGDFGRVFETGPVF 324 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~---~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~F 324 (435)
+++||.|+++||+||.++||+||+||+|++++++|+ .+|.+.|+ +..+||+||||||||+++++|++|||+|||||
T Consensus 1 l~~Rs~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~-~~f~~~~~~~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~f 79 (280)
T cd00777 1 LRLRSRVIKAIRNFLDEQGFVEIETPILTKSTPEGA-RDFLVPSRLHPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCF 79 (280)
T ss_pred CchHHHHHHHHHHHHHHCCCEEEeCCeeecCCCCCC-CCceeccccCCCceeecccCHHHHHHHHHhcCcCcEEEeccce
Confidence 478999999999999999999999999998888755 55998885 45566999999999999999999999999999
Q ss_pred ecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHH
Q 013865 325 RAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGV 404 (435)
Q Consensus 325 R~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai 404 (435)
|+|++++.||+ ||||||||++|.+ |+|+|+++|+||++++..+.+. .+..||+||||.||+
T Consensus 80 R~e~~~~~r~~-Ef~~~e~e~~~~~-~~dlm~~~e~li~~i~~~~~~~-----------------~~~~p~~rity~eA~ 140 (280)
T cd00777 80 RDEDLRADRQP-EFTQIDIEMSFVD-QEDIMSLIEGLLKYVFKEVLGV-----------------ELTTPFPRMTYAEAM 140 (280)
T ss_pred eCCCCCCCccc-eeEEeEeeeccCC-HHHHHHHHHHHHHHHHHHHhCC-----------------CCCCCCceeeHHHHH
Confidence 99999887775 9999999999995 9999999999999999877532 124689999999999
Q ss_pred HHHHHcCCCCCCCCCCC
Q 013865 405 QMLKDAGVEIDPLGDLN 421 (435)
Q Consensus 405 ~lL~~~g~~~~~~~dl~ 421 (435)
+. .|.++.|+.|+.
T Consensus 141 ~~---~~~~~~~~~d~~ 154 (280)
T cd00777 141 ER---YGFKFLWIVDFP 154 (280)
T ss_pred HH---hCCCCccccCCc
Confidence 84 466667777764
|
Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain. |
| >PRK09350 poxB regulator PoxA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=282.88 Aligned_cols=163 Identities=20% Similarity=0.259 Sum_probs=136.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-CCCcceeEeccC------CCceeeccChHHHHhhhccCCCcee
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EGGSAVFRLDYK------GQSACLAQSPQLHKQMSICGDFGRV 317 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-egga~~F~v~~~------~~~~~L~~Spql~lq~~i~~g~~rV 317 (435)
..+|++|+.|++.||+||.++||+||+||+|+.... +....+|.++|+ |+.+||+||||+|+|+++++|++||
T Consensus 2 ~~~l~~r~~i~~~ir~~f~~~gf~EV~TP~l~~~~~~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rv 81 (306)
T PRK09350 2 IPNLLKRAKIIAEIRRFFADRGVLEVETPILSQATVTDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPI 81 (306)
T ss_pred hHHHHHHHHHHHHHHHHHHHCCCEEEECCeEecccCCCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccce
Confidence 468999999999999999999999999999986543 234457999887 7999999999999999999999999
Q ss_pred EEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCce
Q 013865 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLR 397 (435)
Q Consensus 318 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~r 397 (435)
|+||||||||++ |.||++||||||||++|.+ |+|+|+++|+||++++.. .||++
T Consensus 82 f~i~~~FR~e~~-~~~H~~EFt~lE~y~~~~d-~~dlm~~~E~li~~i~~~------------------------~~~~~ 135 (306)
T PRK09350 82 FQICKSFRNEEA-GRYHNPEFTMLEWYRPHYD-MYRLMNEVDDLLQQVLDC------------------------EPAES 135 (306)
T ss_pred EEecceeecCCC-CCCCCcHHHhhhhhhhCCC-HHHHHHHHHHHHHHHHhc------------------------CCceE
Confidence 999999999998 9999999999999999995 999999999999998752 24566
Q ss_pred eeHHHHH-----------------HHHHHcCC--CCCCCCCCCcHHHHHHHHHhh
Q 013865 398 LTFEEGV-----------------QMLKDAGV--EIDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 398 it~~eai-----------------~lL~~~g~--~~~~~~dl~te~E~~L~~~vk 433 (435)
|||.||+ +++.+.|. ..++.+|+.+..++.++.+|.
T Consensus 136 i~~~eaf~~~~g~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~ve 190 (306)
T PRK09350 136 LSYQQAFLRYLGIDPLSADKTQLREVAAKLGLSNIADEEEDRDTLLQLLFTFGVE 190 (306)
T ss_pred EEHHHHHHHHhCCCCCcCCHHHHHHHHHHcCCCCcCCCCCCHHHHHHHHHHHHHH
Confidence 6666654 44455565 334556777777777777764
|
|
| >COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-27 Score=228.36 Aligned_cols=141 Identities=23% Similarity=0.382 Sum_probs=122.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC-CCCCcceeEeccCC------CceeeccChHHHHhhhccCCCceeE
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-SEGGSAVFRLDYKG------QSACLAQSPQLHKQMSICGDFGRVF 318 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~-~egga~~F~v~~~~------~~~~L~~Spql~lq~~i~~g~~rVf 318 (435)
..+..|+.|++.||.||.++||+||+||.|+.+. +|..-.+|.+.|++ .++||+.|||+++|.|+++|-+++|
T Consensus 14 ~~ll~Ra~i~~~iR~FF~erg~lEVeTp~Ls~a~vtd~hL~~F~Te~~~~~~~~~~~l~L~TSPEy~mKrLLAag~~~if 93 (322)
T COG2269 14 DNLLKRAAIIAAIRRFFAERGVLEVETPALSVAPVTDIHLHPFETEFLGPGGAKGKPLWLHTSPEYHMKRLLAAGSGPIF 93 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEecchHhhcCCCCccceeeeeeEEeccCccccceeeeecCcHHHHHHHHHccCCcch
Confidence 3478899999999999999999999999998654 45556689998853 7899999999999999999999999
Q ss_pred EEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCcee
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRL 398 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~ri 398 (435)
+||+||||+. .+.+|+|||||||||..+.+ |+-+|+.+.+|+..++... ++.++
T Consensus 94 ql~kvfRN~E-~G~~H~PEFTMLEWYrv~~d-~~~lm~e~~~Ll~~vl~~~------------------------~~E~l 147 (322)
T COG2269 94 QLGKVFRNEE-MGRLHNPEFTMLEWYRVGCD-YYRLMNEVDDLLQLVLECV------------------------EAERL 147 (322)
T ss_pred hhhHHHhccc-ccccCCCceeEeeeeccCCc-HHHHHHHHHHHHHHHHccC------------------------Cccee
Confidence 9999999999 59999999999999999996 9999999999998887542 35788
Q ss_pred eHHHHHHHHHHcCCCC
Q 013865 399 TFEEGVQMLKDAGVEI 414 (435)
Q Consensus 399 t~~eai~lL~~~g~~~ 414 (435)
||.||+. +-.|+++
T Consensus 148 s~~eaF~--r~~gid~ 161 (322)
T COG2269 148 SYQEAFL--RYLGIDP 161 (322)
T ss_pred eHHHHHH--HHhCCCc
Confidence 8888875 5566553
|
|
| >cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-23 Score=186.35 Aligned_cols=128 Identities=30% Similarity=0.435 Sum_probs=104.1
Q ss_pred EeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCC
Q 013865 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~ 173 (435)
.++++.....|+.|+|+|||+++|.+| +++|++|||+++.+|||+..+.. .+ ++++..|+.||+|.|+|++..++
T Consensus 4 ~~~~~~~~~~g~~V~i~Gwv~~~R~~g-k~~Fi~LrD~~g~~Q~v~~~~~~---~~-~~~~~~l~~gs~V~V~G~~~~~~ 78 (135)
T cd04317 4 YCGELRESHVGQEVTLCGWVQRRRDHG-GLIFIDLRDRYGIVQVVFDPEEA---PE-FELAEKLRNESVIQVTGKVRARP 78 (135)
T ss_pred ehhhCChhHCCCEEEEEEeEehhcccC-CEEEEEEecCCeeEEEEEeCCch---hH-HHHHhCCCCccEEEEEEEEECCC
Confidence 355666667799999999999999999 69999999999999999975421 22 57788999999999999998643
Q ss_pred c-cc--CCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHH
Q 013865 174 V-EI--KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLA 243 (435)
Q Consensus 174 ~-~~--~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~ 243 (435)
. ++ .+.++++||++++|.+|++|.++|+..++.. ..+.++|++|||||||++.
T Consensus 79 ~~~~~~~~~~~~~El~~~~i~vl~~~~~lP~~~~~~~-----------------~~~~~~r~~~R~LdLR~~~ 134 (135)
T cd04317 79 EGTVNPKLPTGEIEVVASELEVLNKAKTLPFEIDDDV-----------------NVSEELRLKYRYLDLRRPK 134 (135)
T ss_pred ccccCCCCCCCcEEEEEeEEEEEECCCCCCCcccccc-----------------CCCHHHhhhcceeecCCCC
Confidence 2 11 1234679999999999999988999876531 2678999999999999863
|
These homodimeric enzymes are class2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, wh |
| >cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.9e-22 Score=169.99 Aligned_cols=107 Identities=22% Similarity=0.362 Sum_probs=90.3
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi 185 (435)
+|+|+|||+++|.+| +++|++|||+++.||||++.+.. .+..|.++.+.|+.||+|.|+|++..++ ++++||
T Consensus 1 ~v~v~GwV~~~R~~g-~~~Fi~lrd~~~~lQ~v~~~~~~-~~~~~~~~~~~l~~g~~V~v~G~v~~~~------~g~~El 72 (108)
T cd04322 1 EVSVAGRIMSKRGSG-KLSFADLQDESGKIQVYVNKDDL-GEEEFEDFKKLLDLGDIIGVTGTPFKTK------TGELSI 72 (108)
T ss_pred CEEEEEEEEEEecCC-CeEEEEEEECCeEEEEEEECCCC-CHHHHHHHHhcCCCCCEEEEEEEEEecC------CCCEEE
Confidence 489999999999999 69999999999999999976532 2345556666699999999999998754 267999
Q ss_pred EEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccccccc
Q 013865 186 QIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDI 239 (435)
Q Consensus 186 ~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldl 239 (435)
+++++++||+| .+||+...+ ..+.++|+++|||||
T Consensus 73 ~~~~~~ils~~~~plP~~~~~-------------------~~~~~~r~~~R~ldl 108 (108)
T cd04322 73 FVKEFTLLSKSLRPLPEKFHG-------------------LTDVETRYRQRYLDL 108 (108)
T ss_pred EeCEeEEeeccCCCCCCCccC-------------------cCChhheeecccccC
Confidence 99999999999 899986543 257899999999996
|
These enzymes are homodimeric class 2b aminoacyl-tRNA synthetases (aaRSs). This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Included in this group are E. coli LysS and LysU. These two isoforms of LysRS are encoded by distinct genes which are differently regulated. Eukaryotes contain 2 sets of aaRSs, both of which encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein |
| >cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.3e-20 Score=155.21 Aligned_cols=100 Identities=50% Similarity=0.734 Sum_probs=85.7
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCC-ceeEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA-TQQVE 184 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~-t~~lE 184 (435)
.|+|+|||+++|.+|++++|++|||+++.||||+..+....+++|+++++.|+.||+|.|+|++..++++++++ ++++|
T Consensus 1 ~V~i~Gwv~~~R~~g~k~~Fi~LrD~sg~iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~E 80 (102)
T cd04320 1 EVLIRARVHTSRAQGAKLAFLVLRQQGYTIQGVLAASAEGVSKQMVKWAGSLSKESIVDVEGTVKKPEEPIKSCTQQDVE 80 (102)
T ss_pred CEEEEEEEEEeecCCCceEEEEEecCCceEEEEEeCCcccCCHHHHHHHhcCCCccEEEEEEEEECCCCcccCCCcCcEE
Confidence 48999999999999989999999999999999998653224678889999999999999999998866554443 37899
Q ss_pred EEEeEEEEeecC-CCCCccccc
Q 013865 185 VQIKKLYCVSRA-AKTPITIED 205 (435)
Q Consensus 185 i~v~~i~vls~~-~~lP~~~~d 205 (435)
|++++|++|++| .+||++..|
T Consensus 81 l~~~~i~il~~~~~~~P~~~~d 102 (102)
T cd04320 81 LHIEKIYVVSEAAEPLPFQLED 102 (102)
T ss_pred EEEEEEEEEecCCCCCCCCCCC
Confidence 999999999999 889997653
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. |
| >cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.3e-19 Score=152.03 Aligned_cols=103 Identities=32% Similarity=0.486 Sum_probs=89.0
Q ss_pred eccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc
Q 013865 95 VGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (435)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~ 174 (435)
++++.....|++|+|+|||+++|.+| +++|++|||+++.+|||+..+ ..++++++++..|+.||+|.|+|++...+.
T Consensus 3 ~~~l~~~~~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~es~V~V~G~v~~~~~ 79 (108)
T cd04316 3 SAEITPELDGEEVTVAGWVHEIRDLG-GIKFVILRDREGIVQVTAPKK--KVDKELFKTVRKLSRESVISVTGTVKAEPK 79 (108)
T ss_pred hhhCchhhCCCEEEEEEEEEeeeccC-CeEEEEEecCCeeEEEEEeCC--CCCHHHHHHHhCCCCcCEEEEEEEEEeCCC
Confidence 45666667899999999999999999 799999999999999999843 246788999999999999999999987543
Q ss_pred ccCCCceeEEEEEeEEEEeecC-CCCCcccc
Q 013865 175 EIKGATQQVEVQIKKLYCVSRA-AKTPITIE 204 (435)
Q Consensus 175 ~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~ 204 (435)
+ .+++||+++++.+|++| .+||++..
T Consensus 80 ~----~~~~Ei~~~~i~il~~~~~~~P~~~~ 106 (108)
T cd04316 80 A----PNGVEIIPEEIEVLSEAKTPLPLDPT 106 (108)
T ss_pred C----CCCEEEEEeEEEEEeCCCCCCCcCcC
Confidence 2 25799999999999999 89998754
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. P. kodakaraensis AspRS is a class 2b aaRS. aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. P. kodakaraensis ND-AspRS can charge both tRNAAsp and tRNAAsn. Some of the enzymes in this group may be discriminating, based on the presence of homologs of asparaginyl-tRNA synthetase (AsnRS) in their completed genomes. |
| >cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-19 Score=150.23 Aligned_cols=103 Identities=29% Similarity=0.346 Sum_probs=87.6
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi 185 (435)
+|+|+|||+++|.+| |++|++|||+++.+|||+..+ .++++++.+..|+.||+|.|+|++...+.+ .+++||
T Consensus 1 ~V~v~Gwv~~~R~~g-k~~Fi~lrD~~g~iQ~v~~~~---~~~~~~~~~~~l~~~s~v~V~G~v~~~~~~----~~~~Ei 72 (103)
T cd04319 1 KVTLAGWVYRKREVG-KKAFIVLRDSTGIVQAVFSKD---LNEEAYREAKKVGIESSVIVEGAVKADPRA----PGGAEV 72 (103)
T ss_pred CEEEEEEEEeEEcCC-CeEEEEEecCCeeEEEEEeCC---CCHHHHHHHhCCCCCCEEEEEEEEEECCCC----CCCEEE
Confidence 489999999999999 789999999999999999754 356777778899999999999999875432 246999
Q ss_pred EEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCcccccccccc
Q 013865 186 QIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVI 237 (435)
Q Consensus 186 ~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~L 237 (435)
++++|.+|++|.++|++.+ .+.++|+++|||
T Consensus 73 ~~~~i~vl~~a~~~pi~~~---------------------~~~~~~~~~rhL 103 (103)
T cd04319 73 HGEKLEIIQNVEFFPITED---------------------ASDEFLLDVRHL 103 (103)
T ss_pred EEEEEEEEecCCCCccCCC---------------------CCHHHHhhccCC
Confidence 9999999999977887622 267899999997
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The archeal enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. |
| >cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.3e-16 Score=126.99 Aligned_cols=85 Identities=31% Similarity=0.381 Sum_probs=72.8
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi 185 (435)
.|+|+|||+++|.+| +++|++|||+++.+|++++.+. ..+|++++..|+.||+|.|+|++..++.+. ++++++||
T Consensus 1 ~V~i~Gwv~~~R~~g-~~~Fi~Lrd~~~~iQ~v~~~~~---~~~~~~~~~~l~~~s~V~v~G~~~~~~~~~-~~~~~~El 75 (85)
T cd04100 1 EVTLAGWVHSRRDHG-GLIFIDLRDGSGIVQVVVNKEE---LGEFFEEAEKLRTESVVGVTGTVVKRPEGN-LATGEIEL 75 (85)
T ss_pred CEEEEEEEehhccCC-CEEEEEEEeCCeeEEEEEECCc---ChHHHHHHhCCCCCCEEEEEeEEEECCCCC-CCCCCEEE
Confidence 389999999999999 6999999999999999998643 233788899999999999999998765433 45678999
Q ss_pred EEeEEEEeec
Q 013865 186 QIKKLYCVSR 195 (435)
Q Consensus 186 ~v~~i~vls~ 195 (435)
+++++++|++
T Consensus 76 ~~~~i~il~~ 85 (85)
T cd04100 76 QAEELEVLSK 85 (85)
T ss_pred EEeEEEEECC
Confidence 9999999975
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. Class 2b aaRSs include the homodimeric aspartyl-, asparaginyl-, and lysyl-tRNA synthetases (AspRS, AsnRS, and LysRS). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Included in this group are archeal and archeal-like A |
| >cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.1e-15 Score=121.77 Aligned_cols=84 Identities=31% Similarity=0.368 Sum_probs=70.0
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi 185 (435)
.|+|+|||+++|.+| +++|++|||+++.+|+++..+.. + . +++++.|+.||+|.|+|++..++.+. ...+++||
T Consensus 1 ~V~v~Gwv~~~R~~g-~~~Fi~LrD~~~~iQ~v~~~~~~--~-~-~~~~~~l~~es~V~V~G~v~~~~~~~-~~~~~~Ei 74 (84)
T cd04323 1 RVKVFGWVHRLRSQK-KLMFLVLRDGTGFLQCVLSKKLV--T-E-FYDAKSLTQESSVEVTGEVKEDPRAK-QAPGGYEL 74 (84)
T ss_pred CEEEEEEEEEEecCC-CcEEEEEEcCCeEEEEEEcCCcc--h-h-HHHHhcCCCcCEEEEEEEEEECCccc-CCCCCEEE
Confidence 489999999999998 89999999999999999975421 2 2 57788999999999999998765443 22367999
Q ss_pred EEeEEEEeec
Q 013865 186 QIKKLYCVSR 195 (435)
Q Consensus 186 ~v~~i~vls~ 195 (435)
+++++++|+.
T Consensus 75 ~~~~i~vl~~ 84 (84)
T cd04323 75 QVDYLEIIGE 84 (84)
T ss_pred EEEEEEEEcC
Confidence 9999999974
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic synthesis, whereas the other exclusively with |
| >cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.5e-14 Score=117.14 Aligned_cols=85 Identities=20% Similarity=0.361 Sum_probs=68.0
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCe-EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lE 184 (435)
+|+|+|||+++|..+++++|++|||+++ .+||+++.+ .+.++.+..|+.||+|.|+|++...+......++++|
T Consensus 1 ~V~v~Gwv~~~R~~~~~~~Fi~LrD~~g~~iQvv~~~~-----~~~~~~~~~l~~~s~V~V~G~v~~~~~~~~~~~~~~E 75 (86)
T cd04321 1 KVTLNGWIDRKPRIVKKLSFADLRDPNGDIIQLVSTAK-----KDAFSLLKSITAESPVQVRGKLQLKEAKSSEKNDEWE 75 (86)
T ss_pred CEEEEEeEeeEeCCCCceEEEEEECCCCCEEEEEECCC-----HHHHHHHhcCCCCcEEEEEEEEEeCCCcCCCCCCCEE
Confidence 4899999999999544899999999999 699998643 1344556789999999999999875432223347899
Q ss_pred EEEeEEEEeec
Q 013865 185 VQIKKLYCVSR 195 (435)
Q Consensus 185 i~v~~i~vls~ 195 (435)
|.+++|.+|++
T Consensus 76 i~~~~i~il~~ 86 (86)
T cd04321 76 LVVDDIQTLNA 86 (86)
T ss_pred EEEEEEEEecC
Confidence 99999999974
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this fungal group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial protein synthesis. Mutations in the gene for |
| >cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.4e-14 Score=115.03 Aligned_cols=79 Identities=23% Similarity=0.325 Sum_probs=66.9
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCe--EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVS--TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~--~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~l 183 (435)
.|+|+|||+++|.+| +++|++|||+++ .|||+++.+.. . ++++..|+.||+|.|+|.+..++.+ .+++
T Consensus 1 ~v~v~Gwv~~~R~~g-~~~Fi~LrD~s~~~~lQvv~~~~~~--~---~~~~~~l~~gs~V~v~G~v~~~~~~----~~~~ 70 (82)
T cd04318 1 EVTVNGWVRSVRDSK-KISFIELNDGSCLKNLQVVVDKELT--N---FKEILKLSTGSSIRVEGVLVKSPGA----KQPF 70 (82)
T ss_pred CEEEEEeEEEEEcCC-cEEEEEEECCCCccCEEEEEeCccc--C---HHHHhcCCCceEEEEEEEEEeCCCC----CCCE
Confidence 389999999999998 899999999987 59999986422 1 4677889999999999999875532 3689
Q ss_pred EEEEeEEEEee
Q 013865 184 EVQIKKLYCVS 194 (435)
Q Consensus 184 Ei~v~~i~vls 194 (435)
||+++++.+++
T Consensus 71 El~~~~i~il~ 81 (82)
T cd04318 71 ELQAEKIEVLG 81 (82)
T ss_pred EEEEEEEEEec
Confidence 99999999986
|
This domain is a beta-barrel domain (OB fold) involved in binding the tRNA anticodon stem-loop. The enzymes in this group are homodimeric class2b aminoacyl-tRNA synthetases (aaRSs). aaRSs catalyze the specific attachment of amino acids (AAs) to their cognate tRNAs during protein biosynthesis. This 2-step reaction involves i) the activation of the AA by ATP in the presence of magnesium ions, followed by ii) the transfer of the activated AA to the terminal ribose of tRNA. In the case of the class2b aaRSs, the activated AA is attached to the 3'OH of the terminal ribose. Eukaryotes contain 2 sets of aaRSs, both of which are encoded by the nuclear genome. One set concerns with cytoplasmic protein synthesis, whereas the other exclusively with mitochondrial |
| >PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=3.1e-13 Score=139.27 Aligned_cols=136 Identities=21% Similarity=0.344 Sum_probs=102.7
Q ss_pred CCCccccccccccccccHHHHHHHHH-----HHHHHHHHHHHhhcCCeEEeeCceeeccC------CCCCcce-eEeccC
Q 013865 225 RVNQDTRLNNRVIDIRTLANQGIFRI-----QSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAV-FRLDYK 292 (435)
Q Consensus 225 ~~~~etrl~~R~Ldlr~~~~~~i~~~-----rs~i~~~~r~fl~~~gF~EV~TP~l~~~~------~egga~~-F~v~~~ 292 (435)
..++|+||++| |.+..+++|.+ .+.+.+++|+||...||.||.||.|+... ..+|... ..+.++
T Consensus 179 ~~~~e~~l~~r----r~~~~~~~~~~g~~~~~s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~i 254 (417)
T PRK09537 179 FKELESELVSR----RKNDLKQMYEEDREDYLGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRV 254 (417)
T ss_pred hhhHHHHHHHh----cchhhHHhhccCCCCHHHHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheee
Confidence 36789999999 88999999999 99999999999999999999999997432 1112110 111124
Q ss_pred CCceeec--cChHHHHhhhc----cCCCceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHH
Q 013865 293 GQSACLA--QSPQLHKQMSI----CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 293 ~~~~~L~--~Spql~lq~~i----~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 365 (435)
+...+|| ..|.|+..... ...--|+|+||+|||+|.. +.+|++||+|+++++...+ .+.|++.++++++..+
T Consensus 255 deel~LRpsLtPsLlr~la~n~k~~~~P~RIFEIG~VFR~E~~-g~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~~L 333 (417)
T PRK09537 255 DKNFCLRPMLAPGLYNYLRKLDRILPDPIKIFEIGPCYRKESD-GKEHLEEFTMVNFCQMGSGCTRENLENIIDDFLKHL 333 (417)
T ss_pred CCceEehhhhHHHHHHHHHhhhhcccCCeeEEEEeceEecCCC-CCCCcceEEEEEEEEeCCchHHHHHHHHHHHHHHHC
Confidence 6789999 78999876321 1112489999999999985 7889999999999988642 3667776666666654
|
|
| >cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.8e-11 Score=110.58 Aligned_cols=115 Identities=23% Similarity=0.328 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccC-CCC-C-c--ceeE-eccCCCceeeccChHHHHhhhccC----CCceeEE
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGS-SEG-G-S--AVFR-LDYKGQSACLAQSPQLHKQMSICG----DFGRVFE 319 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~-~eg-g-a--~~F~-v~~~~~~~~L~~Spql~lq~~i~~----g~~rVfe 319 (435)
+|+.+.+.+|++|...||.||.||.|+... .+. | . .... .+..+...+||.|+...+...+.. .--|+||
T Consensus 1 ~~~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfe 80 (211)
T cd00768 1 IRSKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAE 80 (211)
T ss_pred CHHHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEE
Confidence 367899999999999999999999997642 111 1 1 1222 234677899999999999877654 3469999
Q ss_pred EecceecCCCCCC--ccccccccceeeeecccc-----HHHHHHHHHHHHHHH
Q 013865 320 TGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKH-----YSEVMDIVDRLFVTI 365 (435)
Q Consensus 320 Igp~FR~E~s~t~--rHl~EFt~lE~e~a~~~~-----~~d~m~~~e~li~~i 365 (435)
||+|||+|.+ +. +|+.||+|+++++..... +.+++.++++++..+
T Consensus 81 ig~vfr~e~~-~~~~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~~l 132 (211)
T cd00768 81 IGPAFRNEGG-RRGLRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLRAL 132 (211)
T ss_pred EcceeecCCC-ccccccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHHHc
Confidence 9999999975 43 789999999999998642 567888888887655
|
Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ. |
| >PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.5e-09 Score=81.44 Aligned_cols=75 Identities=27% Similarity=0.415 Sum_probs=63.1
Q ss_pred EEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEE
Q 013865 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (435)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~ 186 (435)
|+|.|||.+++..|++++|+.|+|+++.|||++.. ..+..+...|..|++|.|.|.+.... .++++|.
T Consensus 1 V~v~G~V~~~~~~~~~~~~~~l~D~tg~i~~~~~~------~~~~~~~~~l~~g~~v~v~G~v~~~~------~~~~~l~ 68 (75)
T PF01336_consen 1 VTVEGRVTSIRRSGGKIVFFTLEDGTGSIQVVFFN------EEYERFREKLKEGDIVRVRGKVKRYN------GGELELI 68 (75)
T ss_dssp EEEEEEEEEEEEEETTEEEEEEEETTEEEEEEEET------HHHHHHHHTS-TTSEEEEEEEEEEET------TSSEEEE
T ss_pred CEEEEEEEEEEcCCCCEEEEEEEECCccEEEEEcc------HHhhHHhhcCCCCeEEEEEEEEEEEC------CccEEEE
Confidence 78999999996556699999999999999999984 35667888999999999999998642 1259999
Q ss_pred EeEEEEe
Q 013865 187 IKKLYCV 193 (435)
Q Consensus 187 v~~i~vl 193 (435)
+.++.+|
T Consensus 69 ~~~i~~l 75 (75)
T PF01336_consen 69 VPKIEIL 75 (75)
T ss_dssp EEEEEEE
T ss_pred ECEEEEC
Confidence 9999876
|
The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A .... |
| >TIGR02367 PylS pyrrolysyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-09 Score=108.94 Aligned_cols=111 Identities=24% Similarity=0.431 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccC------CCCCc----ceeEeccCCCceeec--cChHHHHhhhc----cCCC
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGS----AVFRLDYKGQSACLA--QSPQLHKQMSI----CGDF 314 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~------~egga----~~F~v~~~~~~~~L~--~Spql~lq~~i----~~g~ 314 (435)
.+.+.+.+|++|...||.||.||+|+... .+++. ..|. ++...+|| +.|+|+..... ...-
T Consensus 242 ~~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk---~ee~lvLRPdLTPsLaR~La~N~~~l~~P 318 (453)
T TIGR02367 242 LGKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFR---VDKNFCLRPMLAPNLYNYLRKLDRALPDP 318 (453)
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceE---ecCceEecccCHHHHHHHHHHhhhhccCC
Confidence 46789999999999999999999996211 11121 2343 45678999 88999864322 1123
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 365 (435)
-|+|+||+|||+|.. +.+|+.||+|++++++..+ .+.|+..++.+++..+
T Consensus 319 qKIFEIGkVFR~E~~-~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr~L 369 (453)
T TIGR02367 319 IKIFEIGPCYRKESD-GKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLDHL 369 (453)
T ss_pred eeEEEEcCeEecCCC-CCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHHHC
Confidence 499999999999985 7899999999999988642 3777777666666554
|
PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase. |
| >cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain | Back alignment and domain information |
|---|
Probab=98.58 E-value=2e-07 Score=89.14 Aligned_cols=108 Identities=17% Similarity=0.279 Sum_probs=77.8
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCCCCC-c------------ceeEeccCCC--ceeeccC--hHHHHhhhccC--C
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGG-S------------AVFRLDYKGQ--SACLAQS--PQLHKQMSICG--D 313 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~egg-a------------~~F~v~~~~~--~~~L~~S--pql~lq~~i~~--g 313 (435)
.+.+.+|++|...||.||.|+.+++...+-. . .++.+ .. -.+||.| |.|.. .++. .
T Consensus 5 ~~~~~ir~~L~~~Gf~Ev~tys~~~~~~~~~~~~~~~~~~~~~~~~~v~l---~NP~~~~LR~sLlp~LL~--~l~~N~~ 79 (218)
T cd00496 5 KVIEEIEDIFVSMGFTEVEGPEVETDFYNFDALNIPQDHPARDMQDTFYI---NDPARLLLRTHTSAVQAR--ALAKLKP 79 (218)
T ss_pred HHHHHHHHHHHHCCCEEEeCCcccccchhhhhcCCCCCCcccccCceEEE---CCCceEEEeccCcHHHHH--HHHhcCC
Confidence 3567789999999999999999976521100 0 11111 12 3677755 55543 3343 4
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHHH
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTIF 366 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i~ 366 (435)
--|+||||+|||++.+ +..|+|||+++.+.+++.. ++.|++.+++.++..+-
T Consensus 80 ~~~lFEiG~Vf~~~~~-~~~~~~E~~~l~~~~~g~~~df~dlkg~ve~ll~~l~ 132 (218)
T cd00496 80 PIRIFSIGRVYRNDEI-DATHLPEFHQIEGLVVDKGLTFADLKGTLEEFAKELF 132 (218)
T ss_pred CeeEEEEcCeEECCCC-CCCcCCccEEEEEEEECCCCCHHHHHHHHHHHHHHhc
Confidence 5699999999999874 5578999999999999861 48999999999997664
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. |
| >PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.3e-07 Score=87.92 Aligned_cols=115 Identities=19% Similarity=0.321 Sum_probs=80.4
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccC--------CCC-Cc----ceeEe--ccC--CCceeecc--ChHHHHhh-hccC
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGS--------SEG-GS----AVFRL--DYK--GQSACLAQ--SPQLHKQM-SICG 312 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~--------~eg-ga----~~F~v--~~~--~~~~~L~~--Spql~lq~-~i~~ 312 (435)
.+++.+|++|...||.||.+|.+.+.. ... -+ +.|-+ .+- .....||. ||-+..-+ .-..
T Consensus 21 ~~~~~i~~~~~~~Gf~e~~~~~v~s~~~nFD~Ln~p~dHpaR~~~Dtfyi~~p~~~~~~~~vLRThts~~~~~~l~~~~~ 100 (247)
T PF01409_consen 21 KFIREIRDIFVGMGFQEVEGPEVESEFYNFDALNIPQDHPARDMQDTFYISNPYSAEEDYSVLRTHTSPGQLRTLNKHRP 100 (247)
T ss_dssp HHHHHHHHHHHCTTSEEESTTSEEEHHHHTGGGTSTTTSCGGCGTTSEBSCSSSBCECSSEEE-SSTHHHHHHHHTTTSH
T ss_pred HHHHHHHHHHHHCCCeEeeCCeEEeeHHHHHhhCcCCCccccccccceeeeccccccchhhhhhhhhhHHHHHHHHHhcC
Confidence 377889999999999999999995321 111 11 12433 111 57777874 55444432 1122
Q ss_pred CCceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHHHhh
Q 013865 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIFDG 368 (435)
Q Consensus 313 g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~~ 368 (435)
.--|+|+||+|||+|.. +.+|+|+|.|+|.-+... -++.++..+++.+++++|..
T Consensus 101 ~p~kif~iG~VyR~D~~-D~th~~~f~Qleg~~~~~~~~f~~Lk~~l~~l~~~lfG~ 156 (247)
T PF01409_consen 101 PPIKIFEIGKVYRRDEI-DATHLPEFHQLEGLVVDKNVTFEDLKGTLEELLKELFGI 156 (247)
T ss_dssp SSEEEEEEEEEESSSCS-BSSBESEEEEEEEEEEETTE-HHHHHHHHHHHHHHHHTT
T ss_pred CCeEEEecCceEecCCc-ccccCccceeEeeEEEecccchhHHHHHHHHHHHHHhhc
Confidence 34799999999999995 899999999999976653 24889999999999999754
|
1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B .... |
| >cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain | Back alignment and domain information |
|---|
Probab=98.42 E-value=1.4e-06 Score=85.29 Aligned_cols=101 Identities=19% Similarity=0.272 Sum_probs=73.4
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-----CCcceeEe-ccCCCceeec--cChHHHHhhhc--c--CC
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-----GGSAVFRL-DYKGQSACLA--QSPQLHKQMSI--C--GD 313 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-----gga~~F~v-~~~~~~~~L~--~Spql~lq~~i--~--~g 313 (435)
.+++..|.+.+++.|.++||.||.||.|..... . ...+.|++ +-.|+.+.|| ..|++..-.+- . ..
T Consensus 2 ~~~~~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~ 81 (261)
T cd00773 2 AALRRYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPL 81 (261)
T ss_pred hHHHHHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCC
Confidence 367889999999999999999999999976542 1 12236765 4457888888 34444432111 1 12
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeeccc
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK 349 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~ 349 (435)
--|.|++|+|||.|.+ ...|..||+|+++|+-..+
T Consensus 82 p~k~~y~g~vfR~e~~-~~g~~re~~Q~g~Eiig~~ 116 (261)
T cd00773 82 PLKLYYIGPVFRYERP-QKGRYREFYQVGVEIIGSD 116 (261)
T ss_pred CeEEEEEcCEEecCCC-CCCCccceEEeceeeeCCC
Confidence 3499999999999986 4668899999999987654
|
HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain. |
| >PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes | Back alignment and domain information |
|---|
Probab=98.36 E-value=1.3e-06 Score=80.09 Aligned_cols=115 Identities=20% Similarity=0.341 Sum_probs=77.1
Q ss_pred HHHHHHHHHHHHhh-cCCeEEeeCceeeccCC---CC-----CcceeEeccCC-CceeeccChHHH-----Hhhhcc--C
Q 013865 250 IQSQVGNIFRQFLL-SENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKG-QSACLAQSPQLH-----KQMSIC--G 312 (435)
Q Consensus 250 ~rs~i~~~~r~fl~-~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~-~~~~L~~Spql~-----lq~~i~--~ 312 (435)
++.+|.+.+++.+. +.||.||.||.|.+... -| ....|.+.--+ ..++|+-+.+.. +..... .
T Consensus 1 l~~~l~~~~~~~~~~~~G~~ev~~P~l~~~~~~~~sg~~~~~~~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~~~~~~~ 80 (173)
T PF00587_consen 1 LRNALERFIREEFVLKFGFQEVDTPILIPSEVWEKSGHWDNFSDEMFKVKDRGDEEYCLRPTSEPGIYSLFKNEIRSSYR 80 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTEEEEB--SEEEHHHHHHHSHHHHHGGGSEEEEETTTEEEEE-SSSHHHHHHHHHHHEEBHGG
T ss_pred CHHHHHHHHHHHhHHhcCCEEEECCeEEehHHhhhccccccccCCeeeeeecccccEEeccccccceeeeecceeeeccc
Confidence 57889999999999 99999999999986541 11 12356664433 568998665432 222222 1
Q ss_pred CC-ceeEEEecceecCC--CCCCccccccccceeeeeccccHHHHHHHHHHHHHHHH
Q 013865 313 DF-GRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (435)
Q Consensus 313 g~-~rVfeIgp~FR~E~--s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 366 (435)
.+ =|+|+||+|||+|. ..+...+-||+|.|++....+ ++..+..++++..+.
T Consensus 81 ~LP~~~~~~g~~fR~E~~~~~gl~R~reF~~~e~~~f~~~--~~~~~~~~~~~~~~~ 135 (173)
T PF00587_consen 81 DLPLKLYQIGTCFRNEARPTRGLFRLREFTMDEMHIFCTP--EQSEEEFEELLELYK 135 (173)
T ss_dssp GSSEEEEEEEEEEBSSSSSBSTTTS-SEEEEEEEEEEESS--HHHHHHHHHHHHHHH
T ss_pred cCCeEEeecccccccccccccccceeeEeeeeceEEEeCC--cccHHHHHHHHHHHH
Confidence 23 38999999999993 234778889999999987653 677777766665444
|
seryl tRNA synthetase structure; InterPro: IPR002314 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This domain includes the glycine, histidine, proline, threonine and serine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 3UH0_A 3UGT_C 3UGQ_A 1B76_B 1GGM_B 1ATI_A 1ADY_C 1ADJ_C 2I4O_A 2I4M_B .... |
| >PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=4.1e-06 Score=84.79 Aligned_cols=119 Identities=13% Similarity=0.191 Sum_probs=83.2
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccC--------CCC-Cc-ceeEeccCCCceeec--cChHHHHhhhccCCC-ceeE
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS--------SEG-GS-AVFRLDYKGQSACLA--QSPQLHKQMSICGDF-GRVF 318 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~--------~eg-ga-~~F~v~~~~~~~~L~--~Spql~lq~~i~~g~-~rVf 318 (435)
+.+...||++|...||.|+.+|.|.+.- ... -| +.-.+-|.+....|| .||-+-.-|.- ... -|+|
T Consensus 111 ~~~~~~Ir~if~~mGF~ev~gpeIes~~~NFdaLn~P~dHPaR~~~DTfyI~~~~lLRThTSp~qir~L~~-~~~Pirif 189 (339)
T PRK00488 111 TQTIEEIEDIFVGMGFEVAEGPEIETDYYNFEALNIPKDHPARDMQDTFYIDDGLLLRTHTSPVQIRTMEK-QKPPIRII 189 (339)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCccccHHHHHHHhCCCCCCcccccCceEEEcCCceeeccCcHHHHHHHHh-cCCCeEEE
Confidence 3478889999999999999999986311 111 11 111122345556676 67765444332 223 3999
Q ss_pred EEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHHHh-hhhhh
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIFD-GLNNV 372 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~-~~~~~ 372 (435)
++|+|||++.. +.+|.|+|+|+|.-+... -++.|+..+++.+++.+|. .+.-+
T Consensus 190 ~~G~VyR~D~~-DatH~~~FhQleglvvd~~vtf~dLK~~L~~fl~~~fg~~~~~R 244 (339)
T PRK00488 190 APGRVYRNDSD-DATHSPMFHQVEGLVVDKNISFADLKGTLEDFLKAFFGEDVKIR 244 (339)
T ss_pred EeeeEEEcCCC-CcccCcceeeEEEEEEeCCCCHHHHHHHHHHHHHHHcCCCCeEE
Confidence 99999999984 889999999999755542 2489999999999999996 44433
|
|
| >TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit | Back alignment and domain information |
|---|
Probab=98.22 E-value=7.1e-06 Score=82.07 Aligned_cols=111 Identities=18% Similarity=0.296 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccC--CCC---Cc--------ceeEeccCCCceeeccC--hHHHHhhhccCCC-
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS--SEG---GS--------AVFRLDYKGQSACLAQS--PQLHKQMSICGDF- 314 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~--~eg---ga--------~~F~v~~~~~~~~L~~S--pql~lq~~i~~g~- 314 (435)
...+.+.+|++|...||.|+.||.+.+.. .+. .. ++|.+. ...+||.| |-+-. .+....
T Consensus 74 ~~~~~~~ir~~l~~~Gf~Ev~~~~~~s~~~~fd~l~~~~~hpar~~~d~~~l~---d~~vLRtsl~p~ll~--~l~~N~~ 148 (294)
T TIGR00468 74 LTRVIDEIRDIFLGLGFTEEKGPEVETDFWNFDALNIPQDHPARDMQDTFYIK---DRLLLRTHTTAVQLR--TMEENEK 148 (294)
T ss_pred HHHHHHHHHHHHHHCCCEEeeCCceeccHHHHHHhCCCCCCcchhhccceeec---CCcceecccHHHHHH--HHHhcCC
Confidence 34567788999999999999999997541 000 00 123232 34566654 43332 233334
Q ss_pred --ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHHHh
Q 013865 315 --GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIFD 367 (435)
Q Consensus 315 --~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~ 367 (435)
-|+||||+|||++.. +.+|+|||++++.-+... -++.|+..+++.++..+.-
T Consensus 149 ~pirlFEiGrVfr~d~~-d~~~~pef~ql~gl~~~~~~~f~dLKg~le~ll~~l~~ 203 (294)
T TIGR00468 149 PPIRIFSPGRVFRNDTV-DATHLPEFHQVEGLVIDKNVSFTNLKGFLEEFLKKMFG 203 (294)
T ss_pred CCceEEEecceEEcCCC-CCccCChhhEEEEEEECCCCCHHHHHHHHHHHHHHhCC
Confidence 499999999999874 678999999999876642 1488999999999987754
|
Most phenylalanyl-tRNA synthetases are heterodimeric, with 2 alpha (pheS) and 2 beta (pheT) subunits. This model describes the alpha subunit, which shows some similarity to class II aminoacyl-tRNA ligases. Mitochondrial phenylalanyl-tRNA synthetase is a single polypeptide chain, active as a monomer, and similar to this chain rather than to the beta chain, but excluded from this model. An interesting feature of the alignment of all sequences captured by this model is a deep split between non-spirochete bacterial examples and all other examples; supporting this split is a relative deletion of about 50 residues in the former set between two motifs well conserved throughout the alignment. |
| >PRK00037 hisS histidyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=98.19 E-value=9.6e-06 Score=84.40 Aligned_cols=118 Identities=19% Similarity=0.241 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC----CC------CcceeEe-ccCCCceeec--cChHHHHhhhccC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS----EG------GSAVFRL-DYKGQSACLA--QSPQLHKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~----eg------ga~~F~v-~~~~~~~~L~--~Spql~lq~~i~~ 312 (435)
.-.+.+..+...+++.|..+||.||.||++..... .| ..+.|.+ +--|+.+.|| ..|++..-.+--.
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~ei~tP~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~~ar~~~~~~ 95 (412)
T PRK00037 16 EESAKWQYVEDTIREVFERYGFSEIRTPIFEYTELFKRKVGEETDIVEKEMYTFQDKGGRSLTLRPEGTAPVVRAVIEHK 95 (412)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccccchHHHhccccCcccccccceeEEEEcCCCCEEEecCCCcHHHHHHHHhCC
Confidence 45667788999999999999999999999964321 11 2335664 3357888888 3455554322111
Q ss_pred -CCceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 313 -DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 313 -g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
.--|.|++|+|||+|.+ ...|.-||+|+++|+-..++. -|++.++.+++..
T Consensus 96 ~~p~r~~~~g~vfR~e~~-~~gr~ref~Q~g~ei~g~~~~~~d~E~i~~~~~~l~~ 150 (412)
T PRK00037 96 LQPFKLYYIGPMFRYERP-QKGRYRQFHQFGVEVIGSDSPLADAEVIALAADILKA 150 (412)
T ss_pred CCCeEEEEEcCccccCCC-CCCcccceEEcCeeeeCCCCcchhHHHHHHHHHHHHH
Confidence 33599999999999986 445778999999998654321 4566666655544
|
|
| >cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain | Back alignment and domain information |
|---|
Probab=98.19 E-value=7.1e-06 Score=78.37 Aligned_cols=102 Identities=17% Similarity=0.178 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-C-CC-c-----ceeEeccC-----CCceeeccChH--HH---Hhhh
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E-GG-S-----AVFRLDYK-----GQSACLAQSPQ--LH---KQMS 309 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-e-gg-a-----~~F~v~~~-----~~~~~L~~Spq--l~---lq~~ 309 (435)
.+++..|.+.+++.|...||.||.||.|..... + +| . ..|.+..- +..++|+-... ++ ....
T Consensus 2 ~~~~~~l~~~~~~~~~~~G~~ei~~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 2 TALWRALERFLDDRMAEYGYQEILFPFLAPTVLFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCeEcCHHHHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 357889999999999999999999999986441 1 11 1 24555332 46788884433 22 2221
Q ss_pred cc-CCC-ceeEEEecceecCCCC--CCccccccccceeeeeccc
Q 013865 310 IC-GDF-GRVFETGPVFRAEDSY--THRHLCEFTGLDVEMEIKK 349 (435)
Q Consensus 310 i~-~g~-~rVfeIgp~FR~E~s~--t~rHl~EFt~lE~e~a~~~ 349 (435)
.. ..+ -|+|++|+|||+|.+. +..-+-||+|.|++.-..+
T Consensus 82 ~~~~~lP~r~~~~g~~fR~E~~~~~gl~R~reF~q~e~~~~~~~ 125 (235)
T cd00670 82 LSYRALPLRLDQIGPCFRHEPSGRRGLMRVREFRQVEYVVFGEP 125 (235)
T ss_pred ccchhcCeeeeeecccccCCCCCCCCChhheeeeeceEEEEcCH
Confidence 11 123 3899999999999863 1334579999999987643
|
This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. |
| >TIGR00442 hisS histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=98.12 E-value=1.5e-05 Score=82.52 Aligned_cols=118 Identities=17% Similarity=0.223 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CCC-------cceeEe-ccCCCceeec--cChHHHHhhhc--
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-------SAVFRL-DYKGQSACLA--QSPQLHKQMSI-- 310 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---egg-------a~~F~v-~~~~~~~~L~--~Spql~lq~~i-- 310 (435)
.-.+++..+...+++.|.++||.||.||++..... .+| .+.|.+ +.-|+.+.|| ..|++....+-
T Consensus 12 ~~~~~~~~i~~~i~~~f~~~Gy~~i~~P~le~~~~~~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~~ 91 (397)
T TIGR00442 12 EEMIKWQYIEETIREVFELYGFKEIRTPIFEYTELFARKVGEETDIVEKEMYTFKDKGGRSLTLRPEGTAPVARAVIENK 91 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEecCcccchHHHhhhccCccccccccceEEEECCCCCEEeecCCCcHHHHHHHHhcc
Confidence 45677888999999999999999999999964321 111 235664 4467888887 44555433111
Q ss_pred -cCCC-ceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 311 -CGDF-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 311 -~~g~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
...+ -|.|++|+|||.|.+. ..|.-||+|+++|+...++. -|++.++.+++..
T Consensus 92 ~~~~~p~r~~y~g~vfR~e~~~-~gr~ref~Q~g~eiig~~~~~~d~E~i~l~~e~l~~ 149 (397)
T TIGR00442 92 LLLPKPFKLYYIGPMFRYERPQ-KGRYRQFHQFGVEVIGSDSPLADAEIIALAAEILKE 149 (397)
T ss_pred cccCCCeEEEEEcCeecCCCCC-CCcccceEEcCeeeeCCCCHHHHHHHHHHHHHHHHH
Confidence 1112 4999999999999864 44668999999998765432 2455555555543
|
This model finds a histidyl-tRNA synthetase in every completed genome. Apparent second copies from Bacillus subtilis, Synechocystis sp., and Aquifex aeolicus are slightly shorter, more closely related to each other than to other hisS proteins, and actually serve as regulatory subunits for an enzyme of histidine biosynthesis. They were excluded from the seed alignment and score much lower than do single copy histidyl-tRNA synthetases of other genomes not included in the seed alignment. These putative second copies of HisS score below the trusted cutoff. The regulatory protein kinase GCN2 of Saccharomyces cerevisiae (YDR283c), and related proteins from other species designated eIF-2 alpha kinase, have a domain closely related to histidyl-tRNA synthetase that may serve to detect and respond to uncharged tRNA(his), an indicator of amino acid starvation; these regulatory proteins are not orthologous and so score below the noise cutoff. |
| >PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3.5e-05 Score=82.36 Aligned_cols=116 Identities=17% Similarity=0.279 Sum_probs=75.6
Q ss_pred HHHHHHHHHHHHHhhcCCeEEeeCceeecc----------CCCCC---cceeEecc------------------------
Q 013865 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAG----------SSEGG---SAVFRLDY------------------------ 291 (435)
Q Consensus 249 ~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~----------~~egg---a~~F~v~~------------------------ 291 (435)
.....+++.||+.|...||.||.||.+.+. ..+++ .+.|-++.
T Consensus 233 ~~~~~~~~~~~~~f~~~Gf~e~~~p~vE~~~~nfd~lf~p~~hpaR~~~dtf~~~~~~~~~~~~~~~~~v~~~he~g~~~ 312 (489)
T PRK04172 233 HPYREFIDEVRDILVEMGFEEMKGPLVETEFWNFDALFQPQDHPAREMQDTFYLKYPGIGDLPEELVERVKEVHEHGGDT 312 (489)
T ss_pred ChHHHHHHHHHHHHHHCCCEEeeCCeeeecCcccccccCCCCCCCCCccceEEECCcccccCcHHHHHHHHHHHhccCCC
Confidence 345678999999999999999999998743 00000 01221110
Q ss_pred ------------CCCceeeccC--hHHHHhhhcc-CCCceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHH
Q 013865 292 ------------KGQSACLAQS--PQLHKQMSIC-GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVM 355 (435)
Q Consensus 292 ------------~~~~~~L~~S--pql~lq~~i~-~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m 355 (435)
.++.+.||.. |-+-.-.+-- ..=-|+|+||+|||+|.. +..|++||++++..+...+ ++.+++
T Consensus 313 ~~~~~~y~~~~~~~~~~~LR~~~T~~~~r~l~~~~~~p~rlFeiGrVFR~e~~-d~~~l~Ef~ql~~~i~G~~~~f~elk 391 (489)
T PRK04172 313 GSRGWGYKWDEDIAKRLVLRTHTTALSARYLASRPEPPQKYFSIGRVFRPDTI-DATHLPEFYQLEGIVMGEDVSFRDLL 391 (489)
T ss_pred CCccccCCcchhhhhccccccCChHHHHHHHHhcCCCCeEEEEecceEcCCCC-CcccCCchheEEEEEEeCCCCHHHHH
Confidence 0234456522 2222111101 112499999999999985 6688999999999998742 367888
Q ss_pred HHHHHHHHHH
Q 013865 356 DIVDRLFVTI 365 (435)
Q Consensus 356 ~~~e~li~~i 365 (435)
.++++++..+
T Consensus 392 g~l~~ll~~l 401 (489)
T PRK04172 392 GILKEFYKRL 401 (489)
T ss_pred HHHHHHHHHh
Confidence 8888888765
|
|
| >PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=2.6e-05 Score=82.61 Aligned_cols=51 Identities=22% Similarity=0.355 Sum_probs=40.9
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHH
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 365 (435)
--|+|.||+|||+|.. +.+|++||+|+|..+...+ ...+++.++.+++..+
T Consensus 357 P~k~fsigrVfR~d~~-DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~~l 408 (494)
T PTZ00326 357 PKKYFSIDRVFRNETL-DATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFRRI 408 (494)
T ss_pred CceEEecCCEecCCCC-CCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHHhc
Confidence 3599999999999995 8999999999999877643 3567777777666655
|
|
| >cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.98 E-value=1.4e-05 Score=78.45 Aligned_cols=117 Identities=17% Similarity=0.119 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC------CcceeEeccCC-----CceeeccChHH-----HH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG------GSAVFRLDYKG-----QSACLAQSPQL-----HK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg------ga~~F~v~~~~-----~~~~L~~Spql-----~l 306 (435)
.-.+++..|.+.+++.+...||.||.||.|..... ++ +.+.|.+.--+ .+++|+-..+- +.
T Consensus 30 ~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~sg~~~~f~~~~f~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~ 109 (261)
T cd00778 30 YGYAIWENIQKILDKEIKETGHENVYFPLLIPESELEKEKEHIEGFAPEVAWVTHGGLEELEEPLALRPTSETAIYPMFS 109 (261)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhhhcchhhcCcceEEEEecCCcccCCcEEEcCCCCHHHHHHHH
Confidence 45678889999999999999999999999976542 12 22357664322 46888876432 22
Q ss_pred hhhcc-CCC-ceeEEEecceecCCCCC--CccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 307 QMSIC-GDF-GRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 307 q~~i~-~g~-~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
..... .++ =|+|+||+|||+|.+.+ .-=.-||+|.|.+..+.+ .+++.+..++++.
T Consensus 110 ~~i~s~r~LPlr~~~~~~~fR~E~~~~~Gl~R~reF~~~d~h~~~~~-~e~~~~~~~~~~~ 169 (261)
T cd00778 110 KWIRSYRDLPLKINQWVNVFRWETKTTRPFLRTREFLWQEGHTAHAT-EEEAEEEVLQILD 169 (261)
T ss_pred hhccchhhcCHHHHhhhhhccCCCCCCCceeEeeeeeeeceeeccCC-HHHHHHHHHHHHH
Confidence 22111 123 28999999999998632 223459999999988875 6777776666654
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from archaea, the cytoplasm of eukaryotes and some bacteria. |
| >cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.97 E-value=7e-05 Score=73.80 Aligned_cols=121 Identities=16% Similarity=0.113 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----C-cceeEeccCC-----CceeeccChHH-----HHh
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----G-SAVFRLDYKG-----QSACLAQSPQL-----HKQ 307 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----g-a~~F~v~~~~-----~~~~L~~Spql-----~lq 307 (435)
-.+++..|.+.+++-+...||.||.||.|..... .| + .+.|.+.--+ .+++|+-..+- |..
T Consensus 31 g~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~g~~~~~~~~e~~~~~~~~~~~~~~~l~LrPt~e~~~~~~~~~ 110 (264)
T cd00772 31 AKAILDKIENVLDKMFKEHGAQNALFPFFILASFLEKEAEHDEGFSKELAVFKDAGDEELEEDFALRPTLEENIGEIAAK 110 (264)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEECCeeccHHHHhhcCCcccccCccceEEEeCCCCccCceEEECCCCCHHHHHHHHh
Confidence 3456788999999999999999999999976431 11 1 2345553322 67899865543 222
Q ss_pred hhcc-CCCc-eeEEEecceecCCCCCCc---cccccccceeeeeccccHHHHHHHHHHHH---HHHHhhh
Q 013865 308 MSIC-GDFG-RVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLF---VTIFDGL 369 (435)
Q Consensus 308 ~~i~-~g~~-rVfeIgp~FR~E~s~t~r---Hl~EFt~lE~e~a~~~~~~d~m~~~e~li---~~i~~~~ 369 (435)
.... ..+. |+|++|+|||.|.. +.+ =.-||+|.|.+....+ .++....++.++ ..+++.+
T Consensus 111 ~i~s~~~LPlrl~~~~~~fR~E~r-~~~Gl~R~reF~~~e~~~~~~~-~e~a~~e~~~~~~~~~~i~~~l 178 (264)
T cd00772 111 FIKSWKDLPQHLNQIGNKFRDEIR-PRFGFLRAREFIMKDGHSAHAD-AEEADEEFLNMLSAYAEIARDL 178 (264)
T ss_pred hhhhhhccCeeEEEEeCeEeCcCC-CCCCcceeeEEEEeeeEEecCC-HHHHHHHHHHHHHHHHHHHHhc
Confidence 2211 2343 99999999999953 222 2469999999876665 677777777666 3445443
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=5.4e-05 Score=75.80 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=69.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----C---CC-CcceeEeccCCCceeeccChH-----HHHhhhcc-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---EG-GSAVFRLDYKGQSACLAQSPQ-----LHKQMSIC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~---eg-ga~~F~v~~~~~~~~L~~Spq-----l~lq~~i~- 311 (435)
.-.+++..|.+.+++.+.+.||.||.||.|.... + ++ ..+.|.++--+..++|+-... +|......
T Consensus 28 ~g~~l~~~l~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sg~~~~~~~~my~~~~~~~~l~LRP~~~~~~~~~~~~~~~s~ 107 (298)
T cd00771 28 KGAIIRNELEDFLRELQRKRGYQEVETPIIYNKELWETSGHWDHYRENMFPFEEEDEEYGLKPMNCPGHCLIFKSKPRSY 107 (298)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCeecCHHHHhhCCCccccccCceEeccCCceEEEcccCCHHHHHHHHhhccch
Confidence 3466778899999999999999999999997543 1 11 123677755557888874332 22222111
Q ss_pred CCCc-eeEEEecceecCCCCCCc---cccccccceeeeec
Q 013865 312 GDFG-RVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEI 347 (435)
Q Consensus 312 ~g~~-rVfeIgp~FR~E~s~t~r---Hl~EFt~lE~e~a~ 347 (435)
..+. |.|++|+|||+|.+.+.+ =.-||+|.|.++-.
T Consensus 108 ~~LPlr~~~~g~vfR~E~~~~~~Gl~R~reF~q~e~~i~~ 147 (298)
T cd00771 108 RDLPLRLAEFGTVHRYEQSGALHGLTRVRGFTQDDAHIFC 147 (298)
T ss_pred hhCCeEEEEecCcccCCCCCCCCCccccccEEECCEEEEe
Confidence 1343 999999999999863211 23599999999763
|
ThrRS is a homodimer. It is responsible for the attachment of threonine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. |
| >PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain | Back alignment and domain information |
|---|
Probab=97.91 E-value=4.1e-05 Score=80.87 Aligned_cols=50 Identities=22% Similarity=0.431 Sum_probs=41.0
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+|.||+|||+|.. |.+|+|||.|+|--+.-. =++.+++.++..++..+
T Consensus 343 ~k~fsigrVfR~d~i-DatH~~eFhQ~EG~vvd~~~t~~~L~g~l~~f~~~l 393 (492)
T PLN02853 343 KRYFSIDRVFRNEAV-DRTHLAEFHQVEGLVCDRGLTLGDLIGVLEDFFSRL 393 (492)
T ss_pred cEEEeccceecCCCC-CcccCccceeEEEEEEeCCCCHHHHHHHHHHHHHHc
Confidence 499999999999995 899999999999655432 14788888888888775
|
|
| >TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00011 Score=79.98 Aligned_cols=123 Identities=20% Similarity=0.239 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C------CCcceeEec-cCCCceeeccCh-----HHHHhhhcc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E------GGSAVFRLD-YKGQSACLAQSP-----QLHKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e------gga~~F~v~-~~~~~~~L~~Sp-----ql~lq~~i~ 311 (435)
.-.+++..|.+.+|+.|...||.||.||.|..... + -|.+.|.+. -.+..++|+-.. .++...+..
T Consensus 45 ~g~rv~~~I~~~i~~~~~~~G~~ei~~P~l~~~el~~~sg~~~~~~~emf~~~dr~~~~l~LrPT~Ee~~t~~~~~~i~s 124 (568)
T TIGR00409 45 LGLRVLKKVENIVREEMNKDGAIEVLLPALQPAELWQESGRWDTYGPELLRLKDRKGREFVLGPTHEEVITDLARNEIKS 124 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHhhcCCCCccchhcEEEecCCCCEEEEcCCCcHHHHHHHHHHHhh
Confidence 34667889999999999999999999999986431 1 134578873 457788998642 233322211
Q ss_pred -CCCc-eeEEEecceecCC-CC-CCccccccccceeeeeccccHHHHHHHHHHHH---HHHHhhh
Q 013865 312 -GDFG-RVFETGPVFRAED-SY-THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF---VTIFDGL 369 (435)
Q Consensus 312 -~g~~-rVfeIgp~FR~E~-s~-t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li---~~i~~~~ 369 (435)
..+. |+|+|+++||.|. .. +.-=.-||+|.|.|.-..+ ..++....+.|+ ..+|+.+
T Consensus 125 yr~LPlrlyqi~~~fR~E~rpr~Gl~R~REF~~~d~~~f~~~-~~~a~~e~~~~~~~y~~if~~L 188 (568)
T TIGR00409 125 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHSD-EESLDATYQKMYQAYSNIFSRL 188 (568)
T ss_pred ccccCeEEEEeeCEeeCCCCCCCCccccccEEEEEEEEEeCC-hHHHHHHHHHHHHHHHHHHHHh
Confidence 1344 9999999999993 21 1112459999999998775 455555555444 5566655
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent groups. This group includes enzymes from Escherichia coli, Bacillus subtilis, Aquifex aeolicus, the spirochete Treponema pallidum, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. The other group includes the Pro-specific domain of a human multifunctional tRNA ligase and the prolyl-tRNA synthetases from the Archaea, the Mycoplasmas, and the spirochete Borrelia burgdorferi. |
| >TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit | Back alignment and domain information |
|---|
Probab=97.88 E-value=6.3e-05 Score=75.76 Aligned_cols=116 Identities=22% Similarity=0.217 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC---CcceeEe-ccCCCceeec--cChHHHHhhhcc-----C
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG---GSAVFRL-DYKGQSACLA--QSPQLHKQMSIC-----G 312 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg---ga~~F~v-~~~~~~~~L~--~Spql~lq~~i~-----~ 312 (435)
-.+++..|...+++.|.++||.+|.||++..... .+ ..+.|.+ +--|+.+.|| ..|++-.- +.. .
T Consensus 7 ~~~~~~~i~~~l~~~~~~~Gy~~i~tP~le~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~-~~~~~~~~~ 85 (314)
T TIGR00443 7 EAARKEEIERQLQDVFRSWGYQEIITPTLEYLDTLSAGGGILNEDLFKLFDSLGRVLGLRPDMTTPIARA-VSTRLRDRP 85 (314)
T ss_pred HHHHHHHHHHHHHHHHHHcCCeeccCcchhhHHHhcccCCcchhceEEEECCCCCEEeecCcCcHHHHHH-HHHhcccCC
Confidence 4567889999999999999999999999875331 11 2235655 3357788888 35554442 221 1
Q ss_pred CCceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 313 g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
.--|+|++|+|||.|.. ...+.-||+|+++|+-..++. -|++.++-+.+..
T Consensus 86 ~p~r~~y~g~VfR~~~~-~~gr~re~~Q~g~Eiig~~~~~adaEvi~l~~~~l~~ 139 (314)
T TIGR00443 86 LPLRLCYAGNVFRTNES-GAGRSREFTQAGVELIGAGGPAADAEVIALLIEALKA 139 (314)
T ss_pred CCeEEEEeceEeecCCC-cCCCcccccccceEEeCCCCchhHHHHHHHHHHHHHH
Confidence 23599999999999986 455788999999997654322 2566666655554
|
Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit. |
| >COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.87 E-value=6.5e-05 Score=75.87 Aligned_cols=114 Identities=15% Similarity=0.245 Sum_probs=74.8
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCCC-----------CCcceeEeccCCCc---eeec--cChHHHHhhhccCC-Cc
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSE-----------GGSAVFRLDYKGQS---ACLA--QSPQLHKQMSICGD-FG 315 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~e-----------gga~~F~v~~~~~~---~~L~--~Spql~lq~~i~~g-~~ 315 (435)
.++..++++|.+.||.++..|-+.. +-- +.-+.--+-|++.. .-|| +||=--..|.--.. =-
T Consensus 115 ~~~e~i~~iF~~mGF~~~~gp~IE~-d~~NFDaLn~P~dHPARdmqDTFy~~~~~~~~lLRTHTs~vq~R~l~~~~~~P~ 193 (335)
T COG0016 115 QTIEEIEDIFLGMGFTEVEGPEIET-DFYNFDALNIPQDHPARDMQDTFYLKDDREKLLLRTHTSPVQARTLAENAKIPI 193 (335)
T ss_pred HHHHHHHHHHHHcCceeccCCcccc-cccchhhhcCCCCCCcccccceEEEcCCCCceeecccCcHhhHHHHHhCCCCCc
Confidence 4788899999999999999995532 110 10011112244432 3555 44422222211111 46
Q ss_pred eeEEEecceecCCCCCCcccccccccee-eeeccccHHHHHHHHHHHHHHHHhh
Q 013865 316 RVFETGPVFRAEDSYTHRHLCEFTGLDV-EMEIKKHYSEVMDIVDRLFVTIFDG 368 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~rHl~EFt~lE~-e~a~~~~~~d~m~~~e~li~~i~~~ 368 (435)
|+|++|+|||++.. +.+|+|+|.|+|- .+.-.-++.+|+.+++++++.++..
T Consensus 194 k~~~~grvyR~D~~-DaTHs~~FhQiEGlvvd~~~s~~~Lkg~L~~f~~~~fg~ 246 (335)
T COG0016 194 KIFSPGRVYRNDTV-DATHSPEFHQIEGLVVDKNISFADLKGTLEEFAKKFFGE 246 (335)
T ss_pred eEecccceecCCCC-CcccchheeeeEEEEEeCCccHHHHHHHHHHHHHHhcCC
Confidence 99999999999985 8999999999995 3332224789999999999999953
|
|
| >cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.4e-05 Score=74.15 Aligned_cols=115 Identities=19% Similarity=0.221 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC--CC-C-----CcceeEec-cCCCceeeccChH-----HHHhhhcc-
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--SE-G-----GSAVFRLD-YKGQSACLAQSPQ-----LHKQMSIC- 311 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~--~e-g-----ga~~F~v~-~~~~~~~L~~Spq-----l~lq~~i~- 311 (435)
-.+++..|.+.+++.|...||.||.||+|.... .. | +.+.|.+. --+.+++|+...+ ++......
T Consensus 30 g~~l~~~i~~~~~~~~~~~G~~ei~~P~l~~~~~~~~sg~~~~~~~emy~~~d~~~~~l~LrPt~e~~~t~~~~~~i~s~ 109 (255)
T cd00779 30 GLRVLKKIENIIREEMNKIGAQEILMPILQPAELWKESGRWDAYGPELLRLKDRHGKEFLLGPTHEEVITDLVANEIKSY 109 (255)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCccccCcccEEEecCCCCeEEEecCCcHHHHHHHHhccccH
Confidence 456788899999999999999999999997532 11 1 22367763 3457889986532 33332221
Q ss_pred CCCc-eeEEEecceecCCCCCC--ccccccccceeeeeccccHHHHHHHHHHHH
Q 013865 312 GDFG-RVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 312 ~g~~-rVfeIgp~FR~E~s~t~--rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
..+. |+|++|+|||+|..... -=.-||+|+|.+....+ -.+.....++++
T Consensus 110 ~~LPlr~~~~~~~FR~E~~~~~Gl~R~reF~q~e~~~~~~~-~~~a~~~~~~i~ 162 (255)
T cd00779 110 KQLPLNLYQIQTKFRDEIRPRFGLMRGREFLMKDAYSFDID-EESLEETYEKMY 162 (255)
T ss_pred hhCCHHHHhCcceecCCCCCCCceeeeeeEeHhhheeccCC-HHHHHHHHHHHH
Confidence 1344 99999999999942111 13469999999988764 345555444443
|
ProRS is a homodimer. It is responsible for the attachment of proline to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. This subfamily contains the core domain of ProRS from prokaryotes and from the mitochondria of eukaryotes. |
| >PRK09194 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=9.9e-05 Score=80.23 Aligned_cols=123 Identities=21% Similarity=0.230 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC--CC------CCcceeEe-ccCCCceeeccChH-----HHHhhhcc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--SE------GGSAVFRL-DYKGQSACLAQSPQ-----LHKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~--~e------gga~~F~v-~~~~~~~~L~~Spq-----l~lq~~i~ 311 (435)
.-++++..|.+.+|+.|...||.||.||.|.... .. -+.+.|.+ +-.+++++|+-..+ ++...+..
T Consensus 45 ~g~~~~~~i~~~i~~~~~~~G~~ei~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~l~LrPt~e~~~~~~~~~~~~s 124 (565)
T PRK09194 45 LGLRVLRKIENIVREEMNKIGAQEVLMPALQPAELWQESGRWEEYGPELLRLKDRHGRDFVLGPTHEEVITDLVRNEIKS 124 (565)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECcccCcHHHHhhcCCccccchhceEEecCCCCEEEECCCChHHHHHHHHhhhhh
Confidence 3466888999999999999999999999998443 11 13457776 44578899986333 33332221
Q ss_pred -CCC-ceeEEEecceecCC-CCCC-ccccccccceeeeeccccHHHHHHHHHHHH---HHHHhhh
Q 013865 312 -GDF-GRVFETGPVFRAED-SYTH-RHLCEFTGLDVEMEIKKHYSEVMDIVDRLF---VTIFDGL 369 (435)
Q Consensus 312 -~g~-~rVfeIgp~FR~E~-s~t~-rHl~EFt~lE~e~a~~~~~~d~m~~~e~li---~~i~~~~ 369 (435)
..+ -|.|+|+++||.|. .... -=.-||+|.|.|....+ -.+.....+.++ ..+|+.+
T Consensus 125 ~~~LP~r~yqi~~~fR~E~rp~~Gl~R~reF~q~d~~~f~~~-~~~a~~~~~~~~~~~~~i~~~l 188 (565)
T PRK09194 125 YKQLPLNLYQIQTKFRDEIRPRFGLMRGREFIMKDAYSFHAD-EESLDETYDAMYQAYSRIFDRL 188 (565)
T ss_pred cccCCeEEEEeeCCccCCCCCCCcccccccEEEeeEEEEcCC-hHHHHHHHHHHHHHHHHHHHHh
Confidence 122 39999999999994 2111 02469999999998764 334443444444 4555544
|
|
| >PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00011 Score=73.41 Aligned_cols=117 Identities=21% Similarity=0.298 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC------CCCCcceeEe-ccCCCceeec--cChHHHHhhhc---cCC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAVFRL-DYKGQSACLA--QSPQLHKQMSI---CGD 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~------~egga~~F~v-~~~~~~~~L~--~Spql~lq~~i---~~g 313 (435)
.-++.+..|.+.+++.|..+||.+|.||++.... .+...+.|.+ +--|..+.|| ..+++-.-.+. ...
T Consensus 8 ~~~~~~~~i~~~l~~~f~~~Gy~~i~~P~le~~~~~~~~~~~~~~~~~~~~D~~G~~l~LR~D~T~~iaR~~a~~~~~~~ 87 (311)
T PF13393_consen 8 EEARKRERIESKLREVFERHGYEEIETPLLEYYELFLDKSGEDSDNMYRFLDRSGRVLALRPDLTVPIARYVARNLNLPR 87 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT-EE-B--SEEEHHHHHCHSSTTGGCSEEEECTTSSEEEE-SSSHHHHHHHHHHCCGSSS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCeEeecHHhhhccccchhhhEEEEecCCcEeccCCCCcHHHHHHHHHhcCcCC
Confidence 4567788999999999999999999999997542 1112245655 3466777777 33344332221 234
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeeccccHH---HHHHHHHHHHH
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS---EVMDIVDRLFV 363 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~---d~m~~~e~li~ 363 (435)
.-|+|.+|+|||.+.. ...+.-||+|+.+|.-..++.. |++.++.+++.
T Consensus 88 ~~r~~y~g~vfR~~~~-~~g~~re~~Q~g~Eiig~~~~~~daEvi~l~~e~l~ 139 (311)
T PF13393_consen 88 PKRYYYIGPVFRYERP-GKGRPREFYQCGFEIIGSSSLEADAEVIKLADEILD 139 (311)
T ss_dssp SEEEEEEEEEEEEETT-TTTBESEEEEEEEEEESSSSHHHHHHHHHHHHHHHH
T ss_pred CceEEEEcceeecccc-CCCCCceeEEEEEEEECCCCHHHHHHHHHHHHHHHH
Confidence 5799999999999975 3446689999999987765454 77777777775
|
... |
| >cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.85 E-value=3.9e-05 Score=75.05 Aligned_cols=96 Identities=20% Similarity=0.280 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHHHhhcCC--eEEeeCceeeccCCCCCcceeEec-----cCCCceeecc--Ch---HHHHhhhccC--
Q 013865 247 IFRIQSQVGNIFRQFLLSEN--FVEIHTPKLIAGSSEGGSAVFRLD-----YKGQSACLAQ--SP---QLHKQMSICG-- 312 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~g--F~EV~TP~l~~~~~egga~~F~v~-----~~~~~~~L~~--Sp---ql~lq~~i~~-- 312 (435)
-.+++..|.+.+|+.|...| |.||.||+|... +.|.+. .-+..+||+- .| -.++......
T Consensus 31 g~~l~~~i~~~~~~~~~~~g~~~~~i~tP~i~~~------~mf~~~~g~~d~~~~~~~Lrp~~~~~~~~~~~~~~~~~~~ 104 (254)
T cd00774 31 GVELKNNIKSAWRKSFVLEEEDMLEIDSPIITPE------LMFKTSIGPVESGGNLGYLRPETAQGIFVNFKNLLEFNRR 104 (254)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCeEEEeccccCCH------HHheeeecccCCCCcccccCCcccchHHHHHHHHHHHhCC
Confidence 45678899999999999885 999999999753 566664 3456788874 32 1222222211
Q ss_pred CC-ceeEEEecceecCCCCC--Cccccccccceeeeecc
Q 013865 313 DF-GRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIK 348 (435)
Q Consensus 313 g~-~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~ 348 (435)
.+ =|+|+||+|||+|.+.. .-=.-||||+|+|.-..
T Consensus 105 ~lP~~~~qig~~fR~E~~~~~gl~R~ReF~q~d~~~f~~ 143 (254)
T cd00774 105 KLPFGVAQIGKSFRNEISPRNGLFRVREFTQAEIEFFVD 143 (254)
T ss_pred CCCchhhhhchhhccccCcccceeeeccchhhheeeeEC
Confidence 23 28999999999998522 12457999999987543
|
GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly |
| >cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.4e-05 Score=75.27 Aligned_cols=115 Identities=15% Similarity=0.229 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----CcceeEeccCCCceeeccChHHHHhhhccC-----
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~Spql~lq~~i~~----- 312 (435)
.-.+++.+|.+++++.+.+.||.||.||.|..... .| +.+.|.++ +.+++|+-..+..+=.+...
T Consensus 50 ~g~~l~~~l~~~~~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~~~f~v~--~~~~~L~pt~e~~~~~l~~~~~~s~ 127 (297)
T cd00770 50 DGALLERALINFALDFLTKRGFTPVIPPFLVRKEVMEGTGQLPKFDEQLYKVE--GEDLYLIATAEVPLAALHRDEILEE 127 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECcccccHHHHhhcCcCccChhcccEec--CCCEEEeecCCHHHHHHHhcccCCH
Confidence 46788899999999999999999999999986541 11 23456664 37788886665544433322
Q ss_pred -CC-ceeEEEecceecCCC------CCCccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 313 -DF-GRVFETGPVFRAEDS------YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s------~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
.+ =|+|++|+|||+|.+ .+.--.-||+|.|.+ .|... ++..+..++++..
T Consensus 128 ~~LPlr~~~~~~~fR~E~~~~g~~~~GL~R~reF~~~e~~-~f~~~-e~~~~~~~~~l~~ 185 (297)
T cd00770 128 EELPLKYAGYSPCFRKEAGSAGRDTRGLFRVHQFEKVEQF-VFTKP-EESWEELEELISN 185 (297)
T ss_pred hhCCchheecChhHhCccccCCCCCCCceEEEeeeeeeEE-EEECc-hHHHHHHHHHHHH
Confidence 12 389999999999975 233356799999996 45432 5555555555543
|
SerRS is responsible for the attachment of serine to the 3' OH group of ribose of the appropriate tRNA. This domain It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs in the core domain. SerRS synthetase is a homodimer. |
| >PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00014 Score=72.39 Aligned_cols=113 Identities=19% Similarity=0.321 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCC---CCcceeEe-ccCCCceeec--cChHHHHhhhc---cCC-Cc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE---GGSAVFRL-DYKGQSACLA--QSPQLHKQMSI---CGD-FG 315 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~e---gga~~F~v-~~~~~~~~L~--~Spql~lq~~i---~~g-~~ 315 (435)
.-...+..|.+.+++.|...||-+|.||++-....- ...+.|++ +.-|+.+-|| ..+++-.-.+- -.. --
T Consensus 17 ~e~~~~~~i~~~l~~vf~~~Gy~~I~tP~lE~~e~~~~~~~~~~y~~~D~~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~ 96 (281)
T PRK12293 17 KSAKLKREIENVASEILYENGFEEIVTPFFSYHQHQSIADEKELIRFSDEKNHQISLRADSTLDVVRIVTKRLGRSTEHK 96 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeccceeehhhhcccchhceEEEECCCCCEEEECCcCCHHHHHHHHHhcccCCCce
Confidence 445577889999999999999999999999643321 12346665 3356777777 44444432111 011 23
Q ss_pred eeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHH
Q 013865 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i 365 (435)
|.|.+|+|||.|. .||+|+.+|+-..++..|++.++-+.+..+
T Consensus 97 r~~Y~g~vfR~~~-------rEf~Q~GvEliG~~~~~Evi~la~~~l~~l 139 (281)
T PRK12293 97 KWFYIQPVFRYPS-------NEIYQIGAELIGEEDLSEILNIAAEIFEEL 139 (281)
T ss_pred eEEEeccEEecCC-------CcccccCeEeeCCCCHHHHHHHHHHHHHHc
Confidence 9999999999874 599999999998877777777777766654
|
|
| >PLN02908 threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00012 Score=81.44 Aligned_cols=120 Identities=15% Similarity=0.136 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--CC------CcceeEeccCCCceeeccChH-----HHHhhhcc
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EG------GSAVFRLDYKGQSACLAQSPQ-----LHKQMSIC 311 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--eg------ga~~F~v~~~~~~~~L~~Spq-----l~lq~~i~ 311 (435)
-.-.+++..|++.+|+.+..+||.||.||.|..... .+ +.+.|.++--+..++|+-... +|......
T Consensus 318 P~g~~i~~~l~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~~Lrp~~~~~~~~~~~~~~~s 397 (686)
T PLN02908 318 PHGARIYNKLMDFIREQYWERGYDEVITPNIYNMDLWETSGHAAHYKENMFVFEIEKQEFGLKPMNCPGHCLMFAHRVRS 397 (686)
T ss_pred chHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhccEEecCCeeEEEcCCCcHHHHHHHhccccC
Confidence 356788999999999999999999999999975431 11 123566554467888884432 22222211
Q ss_pred C-CC-ceeEEEecceecCCCC---CCccccccccceeeeeccccHHHHHHHHHHHHHHHH
Q 013865 312 G-DF-GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (435)
Q Consensus 312 ~-g~-~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 366 (435)
- .+ =|+|++|+|||+|.+. +..=.-||||.|.+. |+. .+++.+.+++++..+.
T Consensus 398 ~r~LPlr~~~~g~~fR~E~~~~l~Gl~RvReF~q~d~~i-f~~-~~q~~~e~~~~l~~~~ 455 (686)
T PLN02908 398 YRELPLRLADFGVLHRNELSGALTGLTRVRRFQQDDAHI-FCR-EDQIKDEVKGVLDFLD 455 (686)
T ss_pred hhhCCHhHEEeeccccCCCCcCCcCccccccEEEeeEEE-EcC-HHHHHHHHHHHHHHHH
Confidence 1 22 2899999999999863 333456999999998 654 5667776666665444
|
|
| >PLN02788 phenylalanine-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00013 Score=75.75 Aligned_cols=111 Identities=13% Similarity=0.188 Sum_probs=74.4
Q ss_pred HHHHHHHHhhcC---CeEEee--CceeeccC---------CCCCcceeEeccCCCceeec--cChHHHHhhhccCCCcee
Q 013865 254 VGNIFRQFLLSE---NFVEIH--TPKLIAGS---------SEGGSAVFRLDYKGQSACLA--QSPQLHKQMSICGDFGRV 317 (435)
Q Consensus 254 i~~~~r~fl~~~---gF~EV~--TP~l~~~~---------~egga~~F~v~~~~~~~~L~--~Spql~lq~~i~~g~~rV 317 (435)
+...|+++|... ||.+++ .|+.+..- -+++-+.--+-|.+...-|| .|+--.. ++..+-.|+
T Consensus 73 ~~~~i~~~f~~~~~~gf~~~~~~~~iv~~~~NFD~L~~P~dHPaR~~~DTfy~~~~~lLRTHTSa~q~~--~l~~~~~~~ 150 (402)
T PLN02788 73 LKNAIYDYFDENYSNKFKKFDDLSPIVSTKQNFDDVLVPPDHVSRSYNDTYYVDAQTVLRCHTSAHQAE--LLRAGHTHF 150 (402)
T ss_pred HHHHHHHHHhhcccCCcEEecCCCCccchhhhhhhhCCCCCCCccCccceEEecCCccccCCCcHHHHH--HHHhCCCcE
Confidence 556677788776 999998 56543210 01111122234667777777 4442221 222356799
Q ss_pred EEEecceecCCCCCCccccccccceeeeec--------------cccHHHHHHHHHHHHHHHHhh
Q 013865 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEI--------------KKHYSEVMDIVDRLFVTIFDG 368 (435)
Q Consensus 318 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~--------------~~~~~d~m~~~e~li~~i~~~ 368 (435)
+.+|.|||++.. +.+|.|+|.|+|.-+.+ . ...++...++.++..+|..
T Consensus 151 ~~~g~VyRrD~i-D~tH~p~FhQ~EG~~v~~~~~~~~~~~~~~~~-~~~dLKg~Le~l~~~lfg~ 213 (402)
T PLN02788 151 LVTGDVYRRDSI-DATHYPVFHQMEGVRVFSPEEWEASGLDGTDL-AAEDLKKTLEGLARHLFGD 213 (402)
T ss_pred EEEeeEeecCCC-CcccCccceeEEEEEEeccccccccccccccc-CHHHHHHHHHHHHHHhcCC
Confidence 999999999995 89999999999987765 2 2568888889988888654
|
|
| >PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00017 Score=74.99 Aligned_cols=119 Identities=20% Similarity=0.214 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-C----CcceeEe-cc-CCCceeec--cChHHHHhhhcc---
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-G----GSAVFRL-DY-KGQSACLA--QSPQLHKQMSIC--- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-g----ga~~F~v-~~-~~~~~~L~--~Spql~lq~~i~--- 311 (435)
.-.+.+..+...+++.|..+||.||.||++-.... . + ..+.|.+ +- -|+.+.|| ..+++-.-.+-.
T Consensus 15 ~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~ 94 (391)
T PRK12292 15 EEARKIEEIRRRLLDLFRRWGYEEVITPTLEYLDTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLAN 94 (391)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCceeeCcchhhHHHHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccC
Confidence 45567888999999999999999999999963221 1 1 1225655 33 46777887 455554321111
Q ss_pred -CCCceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHHH
Q 013865 312 -GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVTI 365 (435)
Q Consensus 312 -~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~i 365 (435)
..--|.|++|+|||.|.. ..-+.-||+|+.+|+-..++. -|++.++-+++..+
T Consensus 95 ~~~p~r~~y~g~vfR~~~~-~~gr~ref~Q~g~EiiG~~~~~aDaEvi~l~~~~l~~l 151 (391)
T PRK12292 95 RPGPLRLCYAGNVFRAQER-GLGRSREFLQSGVELIGDAGLEADAEVILLLLEALKAL 151 (391)
T ss_pred CCCCeEEEeeceeeecCCC-cCCCccchhccceEEeCCCCchHHHHHHHHHHHHHHHc
Confidence 112399999999999985 344578999999998665433 46677776666554
|
|
| >PRK12305 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00014 Score=79.15 Aligned_cols=102 Identities=20% Similarity=0.187 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-CC-----cceeEe-ccCCCceeecc-ChHH----HHhhhcc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-GG-----SAVFRL-DYKGQSACLAQ-SPQL----HKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-gg-----a~~F~v-~~~~~~~~L~~-Spql----~lq~~i~ 311 (435)
.-.+++..|.+.+++.+...||.||.||+|..... . |. .+.|.+ +--|+.++||- +... |.+....
T Consensus 204 ~~~~~~~~l~~~~~~~~~~~Gy~ev~tP~le~~~l~~~sg~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~~~~~~~~~s 283 (575)
T PRK12305 204 KGAIIRREIEDYLRKEHLKRGYEFVYTPHIGKSDLWKTSGHLDNYKENMFPPMEIDEEEYYLKPMNCPGHILIYKSRLRS 283 (575)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCCcccchhhcccccccCCceEEEecCCCHHHHHHHhcccCC
Confidence 45667899999999999999999999999975431 1 21 235655 33467888882 2222 2222111
Q ss_pred -CCCc-eeEEEecceecCCCCCCc---cccccccceeeeecc
Q 013865 312 -GDFG-RVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIK 348 (435)
Q Consensus 312 -~g~~-rVfeIgp~FR~E~s~t~r---Hl~EFt~lE~e~a~~ 348 (435)
..+. |.|++|+|||+|.+...+ =.-||+|+|++. |.
T Consensus 284 ~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~i-f~ 324 (575)
T PRK12305 284 YRDLPLRLAEFGTVYRYEKSGVLHGLTRVRGFTQDDAHI-FC 324 (575)
T ss_pred hhhCCHhhEEecccccCCCCCCCcCcccccCeEEcceEE-Ee
Confidence 1333 999999999999863211 235999999995 43
|
|
| >TIGR00414 serS seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.00019 Score=75.25 Aligned_cols=115 Identities=16% Similarity=0.272 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-C--C-----CcceeEeccCCCceeeccChHHHHhhhccC-----
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E--G-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-e--g-----ga~~F~v~~~~~~~~L~~Spql~lq~~i~~----- 312 (435)
.-.++..+|++++++.+.+.||.||.||.|..... + | +.+.|.+. +.++||+-..+..+-.+...
T Consensus 171 ~g~~l~~aL~~~~~~~~~~~G~~~v~~P~lv~~~~~~~~G~~~~f~~~~y~i~--~~~~~L~pTsE~~~~~~~~~~i~s~ 248 (418)
T TIGR00414 171 DGAKLERALINFMLDLLEKNGYQEIYPPYLVNEESLDGTGQLPKFEEDIFKLE--DTDLYLIPTAEVPLTNLHRNEILEE 248 (418)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCccccccccceEec--CCCEEEEeCCcHHHHHHHhCcCCCh
Confidence 45777889999999999999999999999986541 1 1 23356664 46788887765444322221
Q ss_pred -CC-ceeEEEecceecCCCC------CCccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 313 -DF-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
.+ =|+|++|+|||+|-+. +.-=.-||++.|. ..|.. -++..+..++++..
T Consensus 249 ~~LPlr~~~~s~~FR~E~g~~G~~t~GL~Rv~qF~k~E~-~~f~~-~e~s~~~~~~~~~~ 306 (418)
T TIGR00414 249 EELPIKYTAHSPCFRSEAGSYGKDTKGLIRVHQFNKVEL-VKFCK-PEESAEELEEMTSD 306 (418)
T ss_pred HhCCeeEEEEcccccCCCCccCCCCCccccccceeeeeE-EEEcC-HHHHHHHHHHHHHH
Confidence 22 3899999999999631 2223459999999 55664 56777777766654
|
This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model. |
| >PRK05431 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00023 Score=74.83 Aligned_cols=115 Identities=12% Similarity=0.221 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHhh-cCCeEEeeCceeeccCC-C--C-----CcceeEeccCCCceeeccChHHHHhhhccCC---
Q 013865 246 GIFRIQSQVGNIFRQFLL-SENFVEIHTPKLIAGSS-E--G-----GSAVFRLDYKGQSACLAQSPQLHKQMSICGD--- 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~-~~gF~EV~TP~l~~~~~-e--g-----ga~~F~v~~~~~~~~L~~Spql~lq~~i~~g--- 313 (435)
.-.++..+|++++++.+. +.||.||.||.|..... + | +.+.|.+. +.++||+-..+..+=.+....
T Consensus 168 ~ga~L~~aL~~~~~~~~~~~~G~~ev~~P~lv~~~~~~~~G~~~~f~~~ly~i~--~~~~~L~pTsE~~l~~l~~~~~~s 245 (425)
T PRK05431 168 DGARLERALIQFMLDLHTEEHGYTEVIPPYLVNEESMYGTGQLPKFEEDLYKIE--DDDLYLIPTAEVPLTNLHRDEILD 245 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEeccccccHHHHhhcCccccchhhceEec--CCCEEEEeCCcHHHHHHHhcccCC
Confidence 456688899999999998 99999999999986431 1 1 22367664 578899876655543222221
Q ss_pred ---C-ceeEEEecceecCCCC------CCccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 314 ---F-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 314 ---~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
+ =|+|++++|||.|-+. +.-=.-||+|.|.+ .|.. -++..+..++|+..
T Consensus 246 ~~dLPlr~~~~s~~fR~Eag~~g~~~~GL~Rv~qF~k~E~~-~f~~-~e~s~~~~~~~l~~ 304 (425)
T PRK05431 246 EEELPLKYTAYSPCFRSEAGSAGRDTRGLIRVHQFDKVELV-KFTK-PEDSYAELEELTAN 304 (425)
T ss_pred HHhCCeeEEEEcCEecCCCCcCCCCCCceeeeeeeeeeeEE-EEEC-HHHHHHHHHHHHHH
Confidence 2 3899999999999742 11134599999998 5664 47777777766654
|
|
| >PRK00413 thrS threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00027 Score=77.77 Aligned_cols=101 Identities=24% Similarity=0.317 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC---CCC-----CcceeEe-ccCCCceeeccC--hH---HHHhhhcc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEG-----GSAVFRL-DYKGQSACLAQS--PQ---LHKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~eg-----ga~~F~v-~~~~~~~~L~~S--pq---l~lq~~i~ 311 (435)
.-.+++..|.+.+++.|...||.||.||+|.... ..| ..+.|.+ +--|+.+.||-- |. +|.+....
T Consensus 268 ~~~~~~~~i~~~~~~~~~~~Gy~ei~tP~le~~~l~~~~g~~~~~~~~my~~~d~~~~~~~LRP~~~~~~~r~~~~~~~s 347 (638)
T PRK00413 268 KGWTIRRELERYIRRKLRKAGYQEVKTPQILDRELWETSGHWDHYRENMFPTTESDGEEYALKPMNCPGHVQIYKQGLRS 347 (638)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCEEEECCeeCCHHHHHhcCChhhhhhccceeecCCCcEEEEecCCcHHHHHHHhCcCCC
Confidence 4566789999999999999999999999997543 112 1235664 334678888732 22 23332211
Q ss_pred -CCCc-eeEEEecceecCCCCC---Cccccccccceeeee
Q 013865 312 -GDFG-RVFETGPVFRAEDSYT---HRHLCEFTGLDVEME 346 (435)
Q Consensus 312 -~g~~-rVfeIgp~FR~E~s~t---~rHl~EFt~lE~e~a 346 (435)
..+. |.|++|+|||.|.+.. ..=.-||||+|++.-
T Consensus 348 ~~~lP~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~~~~~~ 387 (638)
T PRK00413 348 YRDLPLRLAEFGTVHRYEPSGALHGLMRVRGFTQDDAHIF 387 (638)
T ss_pred hhhCCceeeeccCeecCCCCCCCcCcceeeeeEEeeEEEE
Confidence 1333 9999999999998632 112359999999973
|
|
| >PLN02972 Histidyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.00028 Score=78.36 Aligned_cols=120 Identities=14% Similarity=0.255 Sum_probs=80.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC------CCCcceeEe-ccCCCceeec--cChHHHHhhhccC-C
Q 013865 244 NQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFRL-DYKGQSACLA--QSPQLHKQMSICG-D 313 (435)
Q Consensus 244 ~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~------egga~~F~v-~~~~~~~~L~--~Spql~lq~~i~~-g 313 (435)
.-.-..+|..|...+++.|..+||.||.||++-.... +.....|.+ +.-|+.+.|| ..+.+-.-.+.-. .
T Consensus 337 lP~e~~~re~I~~~L~~vFk~hGy~eI~TPvfE~~Ell~~k~Ged~k~mY~f~D~gGr~LaLRPDlTvPiAR~vA~n~~~ 416 (763)
T PLN02972 337 AKEQMAIREKAFSIITSVFKRHGATALDTPVFELRETLMGKYGEDSKLIYDLADQGGELCSLRYDLTVPFARYVAMNGIT 416 (763)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCEEccCCcccchHHhhcccCcchhheEEEECCCCCEEEeCCCChHHHHHHHHhCCCC
Confidence 3456778999999999999999999999999864321 111125654 3456777777 3333332111101 1
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeecc-ccH---HHHHHHHHHHHHH
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~---~d~m~~~e~li~~ 364 (435)
--|.|+||+|||.|... .-+.-||+||++|+... +.. -|++.++-+.+..
T Consensus 417 p~KrYyiG~VFR~e~pq-kGR~REF~Q~G~EIIG~~~~~~aDAEVI~La~E~L~~ 470 (763)
T PLN02972 417 SFKRYQIAKVYRRDNPS-KGRYREFYQCDFDIAGVYEPMGPDFEIIKVLTELLDE 470 (763)
T ss_pred cceEEEeccEEecCCCC-CCCCccceEEeEEEEcCCCcchhhHHHHHHHHHHHHh
Confidence 24888999999999863 34578999999999774 221 4677777777654
|
|
| >CHL00201 syh histidine-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.00028 Score=74.24 Aligned_cols=118 Identities=20% Similarity=0.294 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C--C-C-----cceeEe-ccCCCceeec--cChHHHHh---hh
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E--G-G-----SAVFRL-DYKGQSACLA--QSPQLHKQ---MS 309 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e--g-g-----a~~F~v-~~~~~~~~L~--~Spql~lq---~~ 309 (435)
.-...+..|.+.+++.|...||.||.||++-.... . | . .+.|.+ +.-|+.+.|| ..|++..- ..
T Consensus 16 ~~~~~~~~i~~~i~~~~~~~Gy~~I~TP~~E~~e~~~~~~G~~~~~~~~~my~~~d~~g~~l~LRpd~T~~iaR~~~~~~ 95 (430)
T CHL00201 16 DEINYWQFIHDKALTLLSLANYSEIRTPIFENSSLYDRGIGETTDIVNKEMYRFTDRSNRDITLRPEGTAGIVRAFIENK 95 (430)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeecCcccchHHHHhcccCCcccccccceEEEEcCCCCEEEeCCCCcHHHHHHHHHcc
Confidence 34556888999999999999999999999875331 1 1 1 235665 3456778888 44544432 11
Q ss_pred cc-CCCc-eeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 310 IC-GDFG-RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 310 i~-~g~~-rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
.. .... |.|++|+|||.|.+...|- -||+|+++|+-..++. -|++.++-+.+..
T Consensus 96 ~~~~~~p~R~~y~g~vfR~e~~q~GR~-Ref~Q~g~EiiG~~~~~aD~Evi~l~~~~l~~ 154 (430)
T CHL00201 96 MDYHSNLQRLWYSGPMFRYERPQSGRQ-RQFHQLGIEFIGSIDARADTEVIHLAMQIFNE 154 (430)
T ss_pred ccccCCCeEEEEEcceecCCCCcCCcc-ceeEEeceEEECCCChhhHHHHHHHHHHHHHH
Confidence 11 1233 9999999999998765554 5999999998765432 2566666666554
|
|
| >PRK12420 histidyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00033 Score=73.43 Aligned_cols=119 Identities=19% Similarity=0.283 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC--C---CCCc----ceeEe-ccCCCceeec--cChHHHHhhhccC-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--S---EGGS----AVFRL-DYKGQSACLA--QSPQLHKQMSICG- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~--~---egga----~~F~v-~~~~~~~~L~--~Spql~lq~~i~~- 312 (435)
.-..++..|.+.+++.|..+||.||.||.|.... . .++. ..|.+ +--|+.+.|| ..+++-.-.+.-.
T Consensus 16 ~~~~~~~~i~~~l~~~f~~~Gy~~i~tP~lE~~~~~~~~~~~~~~~~~~~~~~~D~~g~~l~LRpD~T~~iaR~va~~~~ 95 (423)
T PRK12420 16 EEQVLRNKIKRALEDVFERYGCKPLETPTLNMYELMSSKYGGGDEILKEIYTLTDQGKRDLALRYDLTIPFAKVVAMNPN 95 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHHhcccCCCcccccceEEEecCCCceecccccccHHHHHHHHhCcC
Confidence 4556678899999999999999999999997542 1 1121 25654 3456777777 3444432211111
Q ss_pred -CCc-eeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHHH
Q 013865 313 -DFG-RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVTI 365 (435)
Q Consensus 313 -g~~-rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~i 365 (435)
.+. |.|++|+|||.|... .-+.-||+|+.+|+-..++. -|++.++-+.+..+
T Consensus 96 ~~~p~r~~y~g~vfR~~~~~-~gr~rE~~Q~g~EiiG~~~~~adaEvi~la~~~l~~l 152 (423)
T PRK12420 96 IRLPFKRYEIGKVFRDGPIK-QGRFREFIQCDVDIVGVESVMAEAELMSMAFELFRRL 152 (423)
T ss_pred CCCCeeEEEEcceECCCCCC-CCccceeEECCeeeECCCCCcccHHHHHHHHHHHHHC
Confidence 223 899999999999853 44678999999998654322 46777776666643
|
|
| >TIGR00418 thrS threonyl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00022 Score=77.41 Aligned_cols=116 Identities=17% Similarity=0.220 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-C-----CcceeEecc-CCCceeeccChHH-----HHhhhcc-
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-G-----GSAVFRLDY-KGQSACLAQSPQL-----HKQMSIC- 311 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-g-----ga~~F~v~~-~~~~~~L~~Spql-----~lq~~i~- 311 (435)
-.+++..|.+.+|+.+...||.||.||+|..... . | +.+.|.+.- -|+.++||-...- |.+....
T Consensus 199 g~~~~~~i~~~~~~~~~~~G~~ev~tP~l~~~~l~~~sg~~~~~~~emy~~~d~~~~~~~LrP~~~~~i~~~~~~~~~s~ 278 (563)
T TIGR00418 199 GATIRNLLEDFVRQKQIKYGYMEVETPIMYDLELWEISGHWDNYKERMFPFTELDNREFMLKPMNCPGHFLIFKSSLRSY 278 (563)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhcCCcccchhhcceeccCCCceEEEecCCCHHHHHHHhCcCCCh
Confidence 4557789999999999999999999999975431 1 2 122455422 3578899844432 3332222
Q ss_pred CCCc-eeEEEecceecCCCCCC----ccccccccceeeeeccc-----cHHHHHHHHHHHHH
Q 013865 312 GDFG-RVFETGPVFRAEDSYTH----RHLCEFTGLDVEMEIKK-----HYSEVMDIVDRLFV 363 (435)
Q Consensus 312 ~g~~-rVfeIgp~FR~E~s~t~----rHl~EFt~lE~e~a~~~-----~~~d~m~~~e~li~ 363 (435)
..+. |+|++|+|||.|.+ +. -=+-||+|.|+|.-... .+.+++.++.+++.
T Consensus 279 ~~lP~rl~~~g~~fR~E~~-g~~~Gl~R~reF~q~~~~~~~~~~~~~~e~~~~i~~~~~~~~ 339 (563)
T TIGR00418 279 RDLPLRIAELGYSHRYEQS-GELHGLMRVRGFTQDDAHIFCTEDQIKEEFKNQFRLIQKVYS 339 (563)
T ss_pred HHCCceeeEeccccCCCCC-cCCcCcccccceEEeeeEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 1233 99999999999964 31 12359999999976431 02335555555554
|
This model represents the threonyl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. Note that B. subtilis has closely related isozymes thrS and thrZ. The N-terminal regions are quite dissimilar between archaeal and eubacterial forms, while some eukaryotic forms are missing sequence there altogether.. |
| >PRK12444 threonyl-tRNA synthetase; Reviewed | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00029 Score=77.73 Aligned_cols=112 Identities=17% Similarity=0.191 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHhhcCCeEEeeCceeeccC---CCCCc-----ceeEeccCCCceeeccChHHHHhhhccC------CC
Q 013865 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS-----AVFRLDYKGQSACLAQSPQLHKQMSICG------DF 314 (435)
Q Consensus 249 ~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~egga-----~~F~v~~~~~~~~L~~Spql~lq~~i~~------g~ 314 (435)
+++..|.+.+++.+...||.||.||+|.... ..|.. +.|.++--++.++|+-..+-..=.+... ++
T Consensus 275 ~~~~~i~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~L 354 (639)
T PRK12444 275 IIRNELEAFLREIQKEYNYQEVRTPFMMNQELWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYREL 354 (639)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhcCChhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChhhC
Confidence 4556699999999999999999999998643 11221 2443333356778885543332222211 22
Q ss_pred -ceeEEEecceecCCCC---CCccccccccceeeeeccccHHHHHHHHHHHH
Q 013865 315 -GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 315 -~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
-|.|++|+|||.|.+. +.-=.-||+|.|.+ .|.. -+++...+++++
T Consensus 355 P~r~~~~g~~fR~E~~~~~~Gl~R~reF~q~d~~-~f~~-~~~~~~e~~~~~ 404 (639)
T PRK12444 355 PIRMCEFGQVHRHEFSGALNGLLRVRTFCQDDAH-LFVT-PDQIEDEIKSVM 404 (639)
T ss_pred CceeEEeccccCCCCCcCCcCcceeeeeEEccEE-EECC-HHHHHHHHHHHH
Confidence 3999999999999863 21124589999999 6664 344444433333
|
|
| >PRK14799 thrS threonyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00031 Score=75.92 Aligned_cols=119 Identities=15% Similarity=0.147 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC--CCCCc------ceeEeccCCCceeeccChH-----HHHhhhccC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--SEGGS------AVFRLDYKGQSACLAQSPQ-----LHKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~--~egga------~~F~v~~~~~~~~L~~Spq-----l~lq~~i~~ 312 (435)
.=.++|..|...+|+.+.++||.||.||.|.... ..+|- +.|.++--+++++|+--.. +|.+...+-
T Consensus 166 ~G~~i~~~L~~~~r~~~~~~Gy~eV~TP~i~~~eL~k~SGh~~~y~~~mf~~~~~~e~~~LrPm~cp~~~~~~~~~~~Sy 245 (545)
T PRK14799 166 KGQTIRNELIAFMREINDSMGYQEVYTSHVFKTDIWKISGHYTLYRDKLIVFNMEGDEYGVKPMNCPAHILIYKSKPRTY 245 (545)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCeEEECCccchHHHHhhccccccchhhcceeeccCceEEeccCCCHHHHHHHhccccCh
Confidence 5678899999999999999999999999986433 11221 2355544467888884332 333322211
Q ss_pred -CCc-eeEEEecceecCCCCCC---ccccccccceeeeeccccHHHHHHHHHHHHHHHH
Q 013865 313 -DFG-RVFETGPVFRAEDSYTH---RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (435)
Q Consensus 313 -g~~-rVfeIgp~FR~E~s~t~---rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 366 (435)
.+. |.|++|+|||.|.+... .=.-||||.|... |+. .+.+.+.+.+++..+.
T Consensus 246 rdLPlR~~e~g~vfR~E~sg~l~GL~RvReF~Q~DaHi-f~~-~~q~~~E~~~~l~~i~ 302 (545)
T PRK14799 246 RDLPIRFSEFGHVYRWEKKGELYGLLRVRGFVQDDGHI-FLR-EDQLREEIKMLISKTV 302 (545)
T ss_pred hhCCHhhEEecceecCCCCCCccccccceeEEEcccEE-EeC-HHHHHHHHHHHHHHHH
Confidence 232 89999999999987431 2356999999998 765 4555455544444333
|
|
| >PRK08661 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.00019 Score=76.43 Aligned_cols=116 Identities=16% Similarity=0.068 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC------CcceeEeccC-----CCceeeccCh-----HHHH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG------GSAVFRLDYK-----GQSACLAQSP-----QLHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg------ga~~F~v~~~-----~~~~~L~~Sp-----ql~l 306 (435)
.-++++..|.+.+++.|...||.||.||.|..... ++ +.+.|.+.-- +.+++|+-.. .+|.
T Consensus 42 ~g~~i~~~i~~~~~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~~~v~~~~~~~~~e~l~LrPtsE~~i~~~~~ 121 (477)
T PRK08661 42 YGYAIWENIQKILDKLFKETGHENVYFPLLIPESLLEKEKEHVEGFAPEVAWVTHGGGEKLEEKLALRPTSETIIYPMYK 121 (477)
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHhhhcCchhhcccccEEEEccCCCccCceEEEecCCcHHHHHHHH
Confidence 45678889999999999999999999999976542 22 2346776432 4689999655 3444
Q ss_pred hhhcc-CCC-ceeEEEecceecCCCCCC--ccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 307 QMSIC-GDF-GRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 307 q~~i~-~g~-~rVfeIgp~FR~E~s~t~--rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
....+ .++ =|+|++|+|||.|.+ ++ -=.-||+|.|.+..+.+ .++....++.++.
T Consensus 122 ~~i~SyrdLPlrl~q~~~vfR~E~~-~rgl~R~rEF~~~E~h~~~~~-~eea~~e~~~~l~ 180 (477)
T PRK08661 122 KWIQSYRDLPLLYNQWVNVVRWETK-TRPFLRTREFLWQEGHTAHAT-EEEAEEETLEMLE 180 (477)
T ss_pred hhhcchhhcCHHHhcccceeeCCCC-CCCcceeeeEEEcceeeeeCC-HHHHHHHHHHHHH
Confidence 43322 133 289999999999996 43 24569999999998885 7777666666553
|
|
| >PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.00076 Score=70.17 Aligned_cols=119 Identities=13% Similarity=0.122 Sum_probs=80.2
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-CCc----ceeEecc--CCCceeec--cChHHHHhhh--cc-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-GGS----AVFRLDY--KGQSACLA--QSPQLHKQMS--IC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-gga----~~F~v~~--~~~~~~L~--~Spql~lq~~--i~- 311 (435)
.-.+.+..|.+.+++.|...||.||.||++-.... . .|. ..|++.. -|+.+-|| ..+++-.-.+ ..
T Consensus 19 ~e~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~e~~~~~~g~~~~~~~y~f~D~~~g~~l~LRpD~T~~iaR~~a~~~~~ 98 (392)
T PRK12421 19 EEAQKIERLRRRLLDLFASRGYQLVMPPLIEYLESLLTGAGQDLKLQTFKLIDQLSGRLMGVRADITPQVARIDAHLLNR 98 (392)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeCcchhhHHHHhccCCccchhceEEEEcCCCCcEEEECCcCCHHHHHHHHhhcCC
Confidence 44567888999999999999999999999864331 1 122 2565432 25666676 3444443111 01
Q ss_pred CCCceeEEEecceecCCCCCCccccccccceeeeeccccHH---HHHHHHHHHHHHH
Q 013865 312 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS---EVMDIVDRLFVTI 365 (435)
Q Consensus 312 ~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~---d~m~~~e~li~~i 365 (435)
..--|.|.+|+|||.+.....| .-||+|+.+|+-..++.. |++.++-+.+..+
T Consensus 99 ~~p~R~~Y~g~VfR~~~~~~gr-~rEf~Q~GvEiiG~~~~~aDaEvi~l~~e~l~~l 154 (392)
T PRK12421 99 EGVARLCYAGSVLHTLPQGLFG-SRTPLQLGAELYGHAGIEADLEIIRLMLGLLRNA 154 (392)
T ss_pred CCceEEEEeeeEEEcCCCcCCC-cCccceeceEEeCCCCchhHHHHHHHHHHHHHHc
Confidence 1235999999999998754444 479999999987755443 7777777777654
|
|
| >PLN02530 histidine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00057 Score=73.06 Aligned_cols=117 Identities=17% Similarity=0.261 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-CCc----ceeEe-ccCCCceeec--cChHHHHhhhccC---
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-GGS----AVFRL-DYKGQSACLA--QSPQLHKQMSICG--- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-gga----~~F~v-~~~~~~~~L~--~Spql~lq~~i~~--- 312 (435)
.-.+.+..|...+++.|...||.||.||+|-.... . .|. +.|.+ +.-|+.+.|| ..|++..- ++.
T Consensus 82 ~~~~~~~~i~~~~~~~~~~~Gy~~I~tP~lE~~el~~~~~g~~~~~~~y~f~D~~g~~l~LRpD~T~~iaR~--~~~~~~ 159 (487)
T PLN02530 82 EDMRLRNWLFDHFREVSRLFGFEEVDAPVLESEELYIRKAGEEITDQLYNFEDKGGRRVALRPELTPSLARL--VLQKGK 159 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEeccccccchHHHhccccCcccccceEEEECCCCCEEecCCCCcHHHHHH--HHhccc
Confidence 45667889999999999999999999999975321 1 122 25654 4456777777 33444322 211
Q ss_pred --CC-ceeEEEecceecCCCCCCccccccccceeeeecccc---HHHHHHHHHHHHHHH
Q 013865 313 --DF-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH---YSEVMDIVDRLFVTI 365 (435)
Q Consensus 313 --g~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~---~~d~m~~~e~li~~i 365 (435)
.+ -|.|++|+|||.|..... +.-||+|+++|+-..++ --|++.++-+.+..+
T Consensus 160 ~~~~P~r~~y~g~vfR~e~~q~g-r~REf~Q~giEiiG~~~~~aDaEvi~l~~~~l~~l 217 (487)
T PLN02530 160 SLSLPLKWFAIGQCWRYERMTRG-RRREHYQWNMDIIGVPGVEAEAELLAAIVTFFKRV 217 (487)
T ss_pred ccCCCeEEEEEcCEEcCcCCCCC-CccceEEcCeeEeCCCCcchhHHHHHHHHHHHHHc
Confidence 12 389999999999986444 46799999999866442 246666666655543
|
|
| >PRK12325 prolyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0006 Score=71.99 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----CC---C-CcceeEe-ccCCCceeeccCh-----HHHHhhhcc-
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SE---G-GSAVFRL-DYKGQSACLAQSP-----QLHKQMSIC- 311 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~e---g-ga~~F~v-~~~~~~~~L~~Sp-----ql~lq~~i~- 311 (435)
=.+++..|.+.+|+-+...||.||.||.|.... ++ + +.+.|.+ +--+.+++|+... .++......
T Consensus 46 g~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~~sg~~~~~~~emf~~~d~~~~~~~L~Pt~e~~~~~~~~~~~~sy 125 (439)
T PRK12325 46 GLKVLKKIENIVREEQNRAGAIEILMPTIQPADLWRESGRYDAYGKEMLRIKDRHDREMLYGPTNEEMITDIFRSYVKSY 125 (439)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHhhcCCccccchhheEEecCCCCEEEEcCCCcHHHHHHHHHHhhhc
Confidence 367888999999999999999999999998542 11 1 3346776 3456788888532 333332221
Q ss_pred CCC-ceeEEEecceecCCCC--CCccccccccceeeeeccccHHHHHHHHHHHH
Q 013865 312 GDF-GRVFETGPVFRAEDSY--THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 312 ~g~-~rVfeIgp~FR~E~s~--t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
..+ =|+|+||++||+|.+. +..=.-||+|-|.|....+ .+++.+...+++
T Consensus 126 rdLPlrl~q~~~~fR~E~~~~~GL~R~reF~~~D~h~f~~~-~~~a~~~~~~~~ 178 (439)
T PRK12325 126 KDLPLNLYHIQWKFRDEIRPRFGVMRGREFLMKDAYSFDLD-EEGARHSYNRMF 178 (439)
T ss_pred hhhchHheEecCEecCCCCCCCCccccceEeEeccEEEeCC-HHHHHHHHHHHH
Confidence 123 4899999999999641 1113579999999887664 455555444444
|
|
| >PRK03991 threonyl-tRNA synthetase; Validated | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00066 Score=74.42 Aligned_cols=121 Identities=17% Similarity=0.248 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeecc---CC----CC-CcceeEeccCCCceeeccChH-----HHHhhhcc-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG---SS----EG-GSAVFRLDYKGQSACLAQSPQ-----LHKQMSIC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~---~~----eg-ga~~F~v~~~~~~~~L~~Spq-----l~lq~~i~- 311 (435)
.-.+++..|.+++++.+.+.||.+|.||.|... .. ++ +.+.|.+.--+.+++|+-..+ +|+....+
T Consensus 225 ~G~~i~~~L~~~~~~~~~~~G~~~V~tP~~~~~~~~~~sgh~~~f~e~my~v~~~~e~l~Lrp~~c~~~~~~~~~~~~Sy 304 (613)
T PRK03991 225 KGRLIRDLLEDYVYNLVVELGAMPVETPIMYDLSHPAIREHADKFGERQYRVKSDKKDLMLRFAACFGQFLMLKDMTISY 304 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCEEEECCeecChhHHhhcccccccchhceEecCCCceEEEecCCCHHHHHHHhCCcCch
Confidence 567889999999999999999999999988422 11 11 345777765567888885544 22332211
Q ss_pred CCC-ceeEEEec-ceecCCCC---CCccccccccceeeeeccccHHHHHHHHHHHHHHHHh
Q 013865 312 GDF-GRVFETGP-VFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 367 (435)
Q Consensus 312 ~g~-~rVfeIgp-~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~ 367 (435)
..+ =|+|++|+ |||+|.+. +..=+-||||.|.+.-.. +.++.++.++.++..+..
T Consensus 305 rdLPlr~~e~~~~~fR~E~~g~l~GL~RvReF~~~D~h~f~~-~~eqa~~e~~~~l~~~~~ 364 (613)
T PRK03991 305 KNLPLKMYELSTYSFRLEQRGELVGLKRLRAFTMPDMHTLCK-DMEQAMEEFEKQYEMILE 364 (613)
T ss_pred hhCChhhheecchheeCCCCCCCcCcccccceEeeeEEEEEC-CHHHHHHHHHHHHHHHHH
Confidence 112 28999999 99999752 233456999999987654 367888887777766444
|
|
| >TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.0003 Score=74.92 Aligned_cols=115 Identities=22% Similarity=0.218 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccC---CCC------CcceeEeccC-----CCceeeccChHHHH-----hh
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEG------GSAVFRLDYK-----GQSACLAQSPQLHK-----QM 308 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~eg------ga~~F~v~~~-----~~~~~L~~Spql~l-----q~ 308 (435)
.+++..|...+++-+.+.||.||.||.|.... .+| +.+.|.+.-. +.+++|+-..+-.. ..
T Consensus 38 ~~i~~~I~~~i~~~~~~~G~~ev~~P~l~~~~~~~~~~~h~~~f~~e~f~v~~~g~~~~~e~l~LrPt~e~~i~~~~~~~ 117 (472)
T TIGR00408 38 FKIWKNIQKILRNILDEIGHEEVYFPMLIPESELAKEKDHIKGFEPEVYWITHGGLSKLDEPLALRPTSETAMYPMFKKW 117 (472)
T ss_pred HHHHHHHHHHHHHHHHHcCCEEEECCccCCHHHHHhhcchhhhcchhcEEEecCCCCccCCcEEEeCCCcHHHHHHHhcc
Confidence 45588999999999999999999999997543 122 2346777543 47899986654332 22
Q ss_pred hcc-CCCc-eeEEEecceecCCCCC--CccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 309 SIC-GDFG-RVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 309 ~i~-~g~~-rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
... ..+. |+|++|+|||+|.+.+ .-=.-||+|.|.+..|.+ .+++...++.++.
T Consensus 118 i~S~rdLPlr~~q~~~vfR~E~~~~~gl~R~rEF~~~e~h~~~~~-~e~a~~e~~~~l~ 175 (472)
T TIGR00408 118 VKSYTDLPLKINQWVNVFRYETKHTRPFLRTREFTWQEAHTAHAT-AEEAEEQVLRALD 175 (472)
T ss_pred ccChhhcCHHHhheeeeecCCCCCCCCcceeeeeehhhhhhhhCC-HHHHHHHHHHHHH
Confidence 211 1232 8999999999998632 123569999999988875 6776666665554
|
Prolyl-tRNA synthetase is a class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes tRNA synthetases for Gly, His, Ser, and Pro. The prolyl-tRNA synthetases are divided into two widely divergent families. This family includes the archaeal enzyme, the Pro-specific domain of a human multifunctional tRNA ligase, and the enzyme from the spirochete Borrelia burgdorferi. The other family includes enzymes from Escherichia coli, Bacillus subtilis, Synechocystis PCC6803, and one of the two prolyL-tRNA synthetases of Saccharomyces cerevisiae. |
| >PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.0016 Score=67.38 Aligned_cols=109 Identities=18% Similarity=0.279 Sum_probs=72.7
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCC--C-CCc----ceeEe-ccCCCceeec--cChHHHHhhhc--cCCCceeEEE
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS--E-GGS----AVFRL-DYKGQSACLA--QSPQLHKQMSI--CGDFGRVFET 320 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-gga----~~F~v-~~~~~~~~L~--~Spql~lq~~i--~~g~~rVfeI 320 (435)
.|.+.+++.|..+||.||.||++-.... . .|. ..|.+ +--|+.+.|| ..+++-.-.+- ...--|.|.+
T Consensus 9 ~i~~~i~~~f~~~Gy~~I~tP~lE~~e~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~~~~p~R~~Y~ 88 (373)
T PRK12295 9 AAAEALLASFEAAGAVRVDPPILQPAEPFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATAGGEPARYAYL 88 (373)
T ss_pred HHHHHHHHHHHHcCCEEeeCCccccHHHhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcCCCCCeEEEEE
Confidence 6888899999999999999999965431 1 122 25654 3346777777 33333332110 1224599999
Q ss_pred ecceecCCCCCCccccccccceeeeecc-ccH---HHHHHHHHHHHHHH
Q 013865 321 GPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHY---SEVMDIVDRLFVTI 365 (435)
Q Consensus 321 gp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~---~d~m~~~e~li~~i 365 (435)
|+|||.+.. ..-||+|+.+|+-.. +.. -|++.++-+.+..+
T Consensus 89 g~VfR~~~g----r~rEf~Q~GvEiiG~~~~~~aDaEvi~l~~~~L~~l 133 (373)
T PRK12295 89 GEVFRQRRD----RASEFLQAGIESFGRADPAAADAEVLALALEALAAL 133 (373)
T ss_pred ccEEECCCC----CCCcceEeeEEeeCCCCCccchHHHHHHHHHHHHHc
Confidence 999999832 347999999998764 222 37888887777553
|
|
| >PLN02837 threonine-tRNA ligase | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0021 Score=70.62 Aligned_cols=119 Identities=15% Similarity=0.132 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----CcceeEecc-CCCceeeccChH-----HHHhhhc
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDY-KGQSACLAQSPQ-----LHKQMSI 310 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~-~~~~~~L~~Spq-----l~lq~~i 310 (435)
-.-.+++.+|.+++++....+||.+|.||.|..... -| +.+.|.+.- -+..+.|+.+.. +|++...
T Consensus 244 p~G~~l~~~L~~~~~~~~~~~G~~~v~tP~l~~~~l~~~sGh~~~~~~~mf~~~~~~~~~y~l~p~~~p~~~~~~~~~~~ 323 (614)
T PLN02837 244 PKGAIVRHIIEDSWKKMHFEHGYDLLYTPHVAKADLWKTSGHLDFYKENMYDQMDIEDELYQLRPMNCPYHILVYKRKLH 323 (614)
T ss_pred chHHHHHHHHHHHHHHHHHHCCCEEEECCccCCHHHHhhcCCcccchhhcccccCCCCceEEECCCCcHHHHHHHhCccC
Confidence 356788999999999999999999999999975431 11 223555422 234455664432 3333221
Q ss_pred c-CCC-ceeEEEecceecCCCCC---CccccccccceeeeeccccHHHHHHHHHHHHHHH
Q 013865 311 C-GDF-GRVFETGPVFRAEDSYT---HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 311 ~-~g~-~rVfeIgp~FR~E~s~t---~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i 365 (435)
. .++ =|+|++|+|||+|.+.. ..=.-||+|.|.+. |+. .+++.+.++.++..+
T Consensus 324 SyrdLPlr~~~~~~~~R~E~~g~~~GL~RvreF~~~e~h~-f~~-~~q~~~e~~~~l~~~ 381 (614)
T PLN02837 324 SYRDLPIRVAELGTVYRYELSGSLHGLFRVRGFTQDDAHI-FCL-EDQIKDEIRGVLDLT 381 (614)
T ss_pred ChhHCCHhhEeecccccCCCCCCCcCcccccceEECeEEE-EeC-HHHHHHHHHHHHHHH
Confidence 1 122 38999999999998521 22345899999996 875 677777666666543
|
|
| >COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0031 Score=66.25 Aligned_cols=117 Identities=21% Similarity=0.277 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCC---CCc-------ceeEecc-CCCceeec---cCh--HHHHhhhc
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE---GGS-------AVFRLDY-KGQSACLA---QSP--QLHKQMSI 310 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~e---gga-------~~F~v~~-~~~~~~L~---~Sp--ql~lq~~i 310 (435)
=...+..|...+|+-+...||.||.||++-....= .|. +.|.... -|+.+-|| ++| -++.+-..
T Consensus 17 d~~~~~~i~~~~~~v~~~yGf~eI~TPifE~telf~r~~Ge~td~v~kemY~F~Dkggr~laLRpe~Tapv~R~~~en~~ 96 (429)
T COG0124 17 DMALREYIESTIRKVFESYGFSEIRTPIFEYTELFARKSGEETDVVEKEMYTFKDKGGRSLALRPELTAPVARAVAENKL 96 (429)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEeccCccccchhHhhhccCCcccccccceEEEEeCCCCEEEecccCcHHHHHHHHhccc
Confidence 45677889999999999999999999987543211 121 1333322 46777777 444 23332211
Q ss_pred c-CCCceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 311 C-GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 311 ~-~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
. .---|.|.+|||||.|.....|- -||+||++|....++. -|++.++.+++..
T Consensus 97 ~~~~p~k~yy~g~vfRyErPQ~GR~-RqF~Q~g~E~iG~~~~~~DAEvi~l~~~~l~~ 153 (429)
T COG0124 97 DLPKPLKLYYFGPVFRYERPQKGRY-RQFYQFGVEVIGSDSPDADAEVIALAVEILEA 153 (429)
T ss_pred cccCCeeEEEecceecCCCCCCCCc-eeeEEcCeEEeCCCCcccCHHHHHHHHHHHHH
Confidence 1 12349999999999999877765 6999999998765421 3677777777764
|
|
| >PLN02678 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0016 Score=68.85 Aligned_cols=116 Identities=14% Similarity=0.196 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-CC-------CcceeEeccCCCceeeccC---h--HHHHhhhc-c
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-------GSAVFRLDYKGQSACLAQS---P--QLHKQMSI-C 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-eg-------ga~~F~v~~~~~~~~L~~S---p--ql~lq~~i-~ 311 (435)
.-.+++.+|++++++++..+||.||.||.|..... ++ ....|.+.--|.+.||.-. | -+|....+ -
T Consensus 172 ~ga~L~~AL~~y~ld~~~~~Gy~~V~~P~lv~~~~~~~sG~~~~f~e~my~i~~~~~~~yLi~TaE~~l~~~h~~~~~s~ 251 (448)
T PLN02678 172 AGVLLNQALINFGLAFLRKRGYTPLQTPFFMRKDVMAKCAQLAQFDEELYKVTGEGDDKYLIATSEQPLCAYHRGDWIDP 251 (448)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECcccccHHHHhhcCCcccchhcCceecCCCCceeeecccccccChHHhcccCCH
Confidence 34788899999999999999999999999975431 11 1234555322235555432 1 12222111 1
Q ss_pred CCC-ceeEEEecceecCCCC---C---CccccccccceeeeeccccHHH--HHHHHHHHHH
Q 013865 312 GDF-GRVFETGPVFRAEDSY---T---HRHLCEFTGLDVEMEIKKHYSE--VMDIVDRLFV 363 (435)
Q Consensus 312 ~g~-~rVfeIgp~FR~E~s~---t---~rHl~EFt~lE~e~a~~~~~~d--~m~~~e~li~ 363 (435)
..+ =|++++|+|||+|-+. + ..-.-+|+++|.. .|.. -++ .....|+|+.
T Consensus 252 ~eLPlr~~~~s~cfR~Eags~G~~~~GL~RvhqF~KvE~f-~~~~-pe~~~s~~~~e~~l~ 310 (448)
T PLN02678 252 KELPIRYAGYSTCFRKEAGSHGRDTLGIFRVHQFEKVEQF-CITS-PNGNESWEMHEEMLK 310 (448)
T ss_pred HhCCceeEEeccccccccccCCCcCCcceEEEEEEEEEEE-EEEC-CCchhHHHHHHHHHH
Confidence 122 3899999999999752 1 1223489999994 4432 233 4455555544
|
|
| >cd04489 ExoVII_LU_OBF ExoVII_LU_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold domain of Escherichia coli exodeoxyribonuclease VII (ExoVII) large subunit | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.0088 Score=47.16 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=55.8
Q ss_pred EEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEE
Q 013865 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (435)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~ 186 (435)
++|.|-|.++|...++++|+.|.|.++.+.+++..+.. .++...|..|+.|.|.|.+...+. .+++.|.
T Consensus 2 ~~v~g~v~~i~~tk~g~~~~~L~D~~~~i~~~~f~~~~------~~~~~~l~~g~~v~v~g~v~~~~~-----~~~~~l~ 70 (78)
T cd04489 2 VWVEGEISNLKRPSSGHLYFTLKDEDASIRCVMWRSNA------RRLGFPLEEGMEVLVRGKVSFYEP-----RGGYQLI 70 (78)
T ss_pred EEEEEEEecCEECCCcEEEEEEEeCCeEEEEEEEcchh------hhCCCCCCCCCEEEEEEEEEEECC-----CCEEEEE
Confidence 68999999998633359999999999999999986421 123356899999999999974220 1457888
Q ss_pred EeEEE
Q 013865 187 IKKLY 191 (435)
Q Consensus 187 v~~i~ 191 (435)
+++|.
T Consensus 71 v~~i~ 75 (78)
T cd04489 71 VEEIE 75 (78)
T ss_pred EEEEE
Confidence 87764
|
E. coli ExoVII is composed of two non-identical subunits. E. coli ExoVII is a single-strand-specific exonuclease which degrades ssDNA from both 3-prime and 5-prime ends. ExoVII plays a role in methyl-directed mismatch repair in vivo. ExoVII may also guard the genome from mutagenesis by removing excess ssDNA, since the build up of ssDNA would lead to SOS induction and PolIV-dependent mutagenesis. |
| >KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0011 Score=67.10 Aligned_cols=59 Identities=24% Similarity=0.385 Sum_probs=45.3
Q ss_pred HHHHhhhccCCC--ceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHH
Q 013865 303 QLHKQMSICGDF--GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVT 364 (435)
Q Consensus 303 ql~lq~~i~~g~--~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~ 364 (435)
.||.- .-.|| .|.|.|-+|||||-. +.+||+||.++|--++-.+ .+-|+|.++++++..
T Consensus 322 mLy~L--Ak~~f~p~K~FSIDrVFRNEtv-DaTHLAEFHQVEGviad~gltLgdLig~l~~ff~~ 383 (483)
T KOG2784|consen 322 MLYRL--AKKGFKPAKYFSIDRVFRNETV-DATHLAEFHQVEGVIADKGLTLGDLIGILMEFFTK 383 (483)
T ss_pred HHHHH--HhCCCCcccccchhhhhhcccc-chHHHHHHhhhceeeecCCCcHHHHHHHHHHHHhc
Confidence 55542 24556 599999999999996 8999999999998776532 367888888777654
|
|
| >PF13742 tRNA_anti_2: OB-fold nucleic acid binding domain | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.016 Score=48.60 Aligned_cols=76 Identities=13% Similarity=0.249 Sum_probs=59.7
Q ss_pred CCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH--hcCCCCcEEEEEEEEecCCcccCCCce
Q 013865 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV--RSLSNESIVDVIGVVSVPDVEIKGATQ 181 (435)
Q Consensus 104 g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~--~~l~~esiV~V~G~v~~~~~~~~~~t~ 181 (435)
-..|||.|=|.+.+..+++-+|++|+|+..+|+|++-.+.. ..+ ..+..|+-|.|.|.+..-. ..|
T Consensus 21 ~~~vwV~GEIs~~~~~~~gh~YftLkD~~a~i~~~~~~~~~-------~~i~~~~l~~G~~V~v~g~~~~y~-----~~G 88 (99)
T PF13742_consen 21 LPNVWVEGEISNLKRHSSGHVYFTLKDEEASISCVIFRSRA-------RRIRGFDLKDGDKVLVRGRVSFYE-----PRG 88 (99)
T ss_pred cCCEEEEEEEeecEECCCceEEEEEEcCCcEEEEEEEHHHH-------hhCCCCCCCCCCEEEEEEEEEEEC-----CCc
Confidence 47899999999999844467999999999999999986421 222 3689999999999987532 136
Q ss_pred eEEEEEeEEE
Q 013865 182 QVEVQIKKLY 191 (435)
Q Consensus 182 ~lEi~v~~i~ 191 (435)
.++|.+.+|.
T Consensus 89 ~~sl~v~~i~ 98 (99)
T PF13742_consen 89 SLSLIVEDID 98 (99)
T ss_pred EEEEEEEEeE
Confidence 7999988774
|
|
| >PRK04173 glycyl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.0071 Score=64.23 Aligned_cols=30 Identities=13% Similarity=0.424 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHhhc--CCeEEeeCceeec
Q 013865 248 FRIQSQVGNIFRQFLLS--ENFVEIHTPKLIA 277 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~--~gF~EV~TP~l~~ 277 (435)
.++|..|.+++|+.+.. .||.||.||+|..
T Consensus 38 ~~l~~~i~~~~r~~~~~~~~~~~ev~tp~i~~ 69 (456)
T PRK04173 38 VELKNNIKRAWWKSFVQEREDVVGIDSPIIMP 69 (456)
T ss_pred HHHHHHHHHHHHHHHHhccCCEEEEeccccCC
Confidence 46788999999999987 7999999999875
|
|
| >cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.021 Score=45.27 Aligned_cols=73 Identities=23% Similarity=0.309 Sum_probs=55.2
Q ss_pred EEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEE
Q 013865 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (435)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~ 186 (435)
|+|.|=|.+.+..|.. +|+.|+|+...|.|++-.... ......+..|+.|.|.|.+.. ..|.+.|.
T Consensus 1 v~v~GeVs~~~~~~GH-vyfsLkD~~a~i~cv~f~~~~------~~~~~~l~~Gd~V~v~G~v~~-------~~G~~ql~ 66 (73)
T cd04487 1 VHIEGEVVQIKQTSGP-TIFTLRDETGTVWAAAFEEAG------VRAYPEVEVGDIVRVTGEVEP-------RDGQLQIE 66 (73)
T ss_pred CEEEEEEeccccCCCC-EEEEEEcCCEEEEEEEEchhc------cCCcCCCCCCCEEEEEEEEec-------CCeEEEEE
Confidence 5789999876445435 889999999999999875421 111246899999999999864 13679999
Q ss_pred EeEEEEe
Q 013865 187 IKKLYCV 193 (435)
Q Consensus 187 v~~i~vl 193 (435)
+.++.+|
T Consensus 67 v~~i~~~ 73 (73)
T cd04487 67 VESLEVL 73 (73)
T ss_pred EeeEEEC
Confidence 9999875
|
RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function. |
| >COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.007 Score=64.66 Aligned_cols=116 Identities=18% Similarity=0.221 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC-------CCC-CcceeEecc-CCCceeeccChHHHHhhhc----c--
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEG-GSAVFRLDY-KGQSACLAQSPQLHKQMSI----C-- 311 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~-------~eg-ga~~F~v~~-~~~~~~L~~Spql~lq~~i----~-- 311 (435)
-++++..|.+.+|+-|++.|..||.-|+|+++. .+| |.++|.+.- -++++.|+-..|=-.--++ -
T Consensus 46 g~rv~~kI~~iir~em~~~G~~Evl~P~L~p~eLwkEs~r~~~f~~El~~v~drg~~~l~L~PTsEe~it~~~~~~i~SY 125 (500)
T COG0442 46 GLRVLEKIENIIREEMDKIGAQEVLFPTLIPAELWKESGRWEGFGPELFRVKDRGDRPLALRPTSEEVITDMFRKWIRSY 125 (500)
T ss_pred HHHHHHHHHHHHHHHHHhcCceEEechhcCHHHHHHHhChhhhcchhhEEEEccCCceeeeCCCcHHHHHHHHHHHhhhh
Confidence 577888999999999999999999999999843 123 556888754 5789999966653221111 1
Q ss_pred CCC-ceeEEEecceecCCC--CCCccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 312 GDF-GRVFETGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 312 ~g~-~rVfeIgp~FR~E~s--~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
.+| =++|+|..+||.|-- ...--.-||+|=|.|-.+.+ .+++....+.++.
T Consensus 126 kdLPl~lYQi~~kfRdE~rpr~gllR~REF~mkdaySfh~~-~e~a~~~y~~~~~ 179 (500)
T COG0442 126 KDLPLKLYQIQSKFRDEKRPRFGLLRGREFLMKDAYSFHAD-EEDAEETYEKMLD 179 (500)
T ss_pred hhCCcceeeeeeEEeccccCCCCccchheeeecccccccCC-HHHHHHHHHHHHH
Confidence 122 279999999999962 12234679999999999986 8888888877764
|
|
| >PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.027 Score=55.86 Aligned_cols=95 Identities=12% Similarity=0.055 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--CCCcc----eeE-e-ccCCCceeec--cChHHHHhhhc-cCC
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EGGSA----VFR-L-DYKGQSACLA--QSPQLHKQMSI-CGD 313 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--egga~----~F~-v-~~~~~~~~L~--~Spql~lq~~i-~~g 313 (435)
+.-+..+..|.+.+++.|...||-+|.||++-.... .++.. .|. + +--|+.+-|| ..|++-.-.+. ..+
T Consensus 4 ~~~~~~~~~ie~~l~~~f~~~GY~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~Gr~laLRpD~T~~iAR~~a~~~~~ 83 (272)
T PRK12294 4 SEQLIALKESETAFLKYFNKADYELVDFSVIEKLDWKQLNHEDLQQMGERSFWQHEHQIYALRNDFTDQLLRYYSMYPTA 83 (272)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCeEeeCCcchhHHhhhccccchhhhheeeeecCCCCEEEEcCCCCHHHHHHHHhcCCC
Confidence 344556677889999999999999999999953322 12211 222 2 2246777787 55566552111 124
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeec
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI 347 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~ 347 (435)
..|.|.+|+|||.+. +|+|+.+|.-.
T Consensus 84 ~~Rl~Y~g~VfR~~~--------~~~Q~GvEliG 109 (272)
T PRK12294 84 ATKVAYAGLIIRNNE--------AAVQVGIENYA 109 (272)
T ss_pred CceEEEeccEeccCC--------CcceeceEEEC
Confidence 569999999999875 38999999876
|
|
| >PLN02320 seryl-tRNA synthetase | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0081 Score=64.17 Aligned_cols=117 Identities=18% Similarity=0.302 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-CC-Cc-------ceeEeccCCCceeeccChH-----HHHhhhcc-
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-GS-------AVFRLDYKGQSACLAQSPQ-----LHKQMSIC- 311 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-eg-ga-------~~F~v~~~~~~~~L~~Spq-----l~lq~~i~- 311 (435)
..++..++++++++++..+||.||.||.|..... +| |- .+|.++ +.++||.-..| +|....+.
T Consensus 232 ~a~Le~ALi~f~ld~~~~~Gy~eV~tP~lv~~~l~~~sG~~p~~e~~~~y~ie--~ed~~Li~TaE~Pl~~~~~~~ils~ 309 (502)
T PLN02320 232 AVLLEMALVNWTLSEVMKKGFTPLTTPEIVRSSVVEKCGFQPRGDNTQVYSID--GSDQCLIGTAEIPVGGIHMDSILLE 309 (502)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHHHhcCCCcccccCceeEEC--CCceEEeecccccccccccccccCH
Confidence 4446678999999999999999999999985442 22 21 123332 46677742222 33332221
Q ss_pred CCC-ceeEEEecceecCCCCCC------ccccccccceeeeeccccHHHHHHHHHHHHHHHHh
Q 013865 312 GDF-GRVFETGPVFRAEDSYTH------RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFD 367 (435)
Q Consensus 312 ~g~-~rVfeIgp~FR~E~s~t~------rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~ 367 (435)
..+ =|++++|+|||.|-+... --.-+|+..|... |+. -++..+..++|+..+..
T Consensus 310 ~dLPlRy~~~s~cFR~EAgs~G~d~rGL~RvhQF~KvE~~i-f~~-peqs~~e~e~ll~~~e~ 370 (502)
T PLN02320 310 SALPLKYVAFSHCFRTEAGAAGAATRGLYRVHQFSKVEMFV-ICR-PEESESFHEELIQIEED 370 (502)
T ss_pred hhCCceeEEeccccccccccCCCcCCCceeeeeeecccEEE-EEC-HHHHHHHHHHHHHHHHH
Confidence 122 389999999999965111 1233799999854 443 57777777777765443
|
|
| >TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0053 Score=64.58 Aligned_cols=52 Identities=13% Similarity=0.220 Sum_probs=44.3
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHH
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 365 (435)
=-|+|+||+|||+|...+.+|+++|.++|.-++..+ ++.|++.+++.|++.+
T Consensus 207 PiRIFsIGRVfRrD~~~DaTHl~eFhQlEGLVVdedVSf~DLKgvLe~LLr~L 259 (533)
T TIGR00470 207 PLKLFSIDRCFRREQREDRSHLMTYHSASCVVVDEEVSVDDGKAVAEGLLAQF 259 (533)
T ss_pred CeEEEeeeeEEecCCCCCCccCceeeeEEEEEECCCCCHHHHHHHHHHHHHHh
Confidence 359999999999996457799999999998766532 4899999999999988
|
This family of archaeal proteins resembles known phenylalanyl-tRNA synthetase alpha chains. Recently, it was shown to act in a proposed pathway of tRNA(Cys) indirect aminoacylation, resulting in Cys biosynthesis from O-phosphoserine, in certain archaea. It charges tRNA(Cys) with O-phosphoserine. The pscS gene product converts the phosphoserine to Cys. |
| >cd04485 DnaE_OBF DnaE_OBF: A subfamily of OB folds corresponding to the C-terminal OB-fold nucleic acid binding domain of Thermus aquaticus and Escherichia coli type C replicative DNA polymerase III alpha subunit (DnaE) | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.044 Score=42.80 Aligned_cols=72 Identities=17% Similarity=0.333 Sum_probs=50.8
Q ss_pred EEEEEeeee----cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEE
Q 013865 109 IRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (435)
Q Consensus 109 v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lE 184 (435)
|.|.|.+++ ..|+.++|+.|.|+++.+.+++... ...++...+..|..|.|.|.+..-. +.++
T Consensus 2 i~g~v~~~~~~~~k~g~~~~~~~l~D~tg~~~~~~f~~------~~~~~~~~l~~g~~v~v~G~v~~~~-------~~~~ 68 (84)
T cd04485 2 VAGLVTSVRRRRTKKGKRMAFVTLEDLTGSIEVVVFPE------TYEKYRDLLKEDALLLVEGKVERRD-------GGLR 68 (84)
T ss_pred EEEEEEEeEEEEcCCCCEEEEEEEEeCCCeEEEEECHH------HHHHHHHHhcCCCEEEEEEEEEecC-------CceE
Confidence 455555432 3465789999999999999999732 1223456789999999999996421 3477
Q ss_pred EEEeEEEEe
Q 013865 185 VQIKKLYCV 193 (435)
Q Consensus 185 i~v~~i~vl 193 (435)
|.+.++..+
T Consensus 69 l~~~~i~~~ 77 (84)
T cd04485 69 LIAERIEDL 77 (84)
T ss_pred EEeeccccH
Confidence 887776544
|
The DNA polymerase holoenzyme of E. coli contains two copies of this replicative polymerase, each of which copies a different DNA strand. This group also contains Bacillus subtilis DnaE. Replication in B. subtilis and Staphylococcus aureus requires two different type C polymerases, polC and DnaE, both of which are thought to be included in the DNA polymerase holoenzyme. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >PRK07373 DNA polymerase III subunit alpha; Reviewed | Back alignment and domain information |
|---|
Probab=96.17 E-value=0.034 Score=58.90 Aligned_cols=85 Identities=15% Similarity=0.198 Sum_probs=63.5
Q ss_pred eccccCCCCCCEEEEEEEEeeeec----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 95 VGALNGSLKDQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
+.++.....|+.|+|.|.|.++|. .|+.|+|+.|.|.++.+.+++..+ ...++...|..+.+|.|+|.+.
T Consensus 271 ~~~l~~~~~~~~v~vaG~I~~ik~~~TKkG~~maf~~leD~tG~ie~vvFp~------~y~~~~~~l~~~~~v~v~G~v~ 344 (449)
T PRK07373 271 LSELEEQKEKTKVSAVVMLNEVKKIVTKKGDPMAFLQLEDLSGQSEAVVFPK------SYERISELLQVDARLIIWGKVD 344 (449)
T ss_pred HHHHhcccCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEEE
Confidence 444433345889999999999874 366799999999999999999843 2334556799999999999996
Q ss_pred cCCcccCCCceeEEEEEeEEEE
Q 013865 171 VPDVEIKGATQQVEVQIKKLYC 192 (435)
Q Consensus 171 ~~~~~~~~~t~~lEi~v~~i~v 192 (435)
..+ +.+.|.+.+|.-
T Consensus 345 ~~~-------~~~~liv~~i~~ 359 (449)
T PRK07373 345 RRD-------DQVQLIVEDAEP 359 (449)
T ss_pred ecC-------CeEEEEEeEeec
Confidence 421 246677776643
|
|
| >COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.0068 Score=64.74 Aligned_cols=88 Identities=19% Similarity=0.322 Sum_probs=66.2
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
++.+.+|+. +.|++|.|+|-|..++..+.- .-+.|+|+++.+++-+..... + .-...+..|++|.|+|.|..
T Consensus 202 r~~i~~id~-~ig~tV~I~GeV~qikqT~GP-TVFtltDetg~i~aAAFe~aG-v-----RAyP~IevGdiV~ViG~V~~ 273 (715)
T COG1107 202 RTLIDDLDE-MIGKTVRIEGEVTQIKQTSGP-TVFTLTDETGAIWAAAFEEAG-V-----RAYPEIEVGDIVEVIGEVTR 273 (715)
T ss_pred cccHHHHHh-hcCceEEEEEEEEEEEEcCCC-EEEEEecCCCceehhhhccCC-c-----ccCCCCCCCceEEEEEEEee
Confidence 345666766 899999999999999998734 556999999999998875422 1 22357999999999999975
Q ss_pred CCcccCCCceeEEEEEeEEEEee
Q 013865 172 PDVEIKGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~vls 194 (435)
.. |.+-|.+..++.|.
T Consensus 274 r~-------g~lQiE~~~me~L~ 289 (715)
T COG1107 274 RD-------GRLQIEIEAMEKLT 289 (715)
T ss_pred cC-------CcEEEeehhhHHhh
Confidence 32 45666666666654
|
|
| >cd03524 RPA2_OBF_family RPA2_OBF_family: A family of oligonucleotide binding (OB) folds with similarity to the OB fold of the single strand (ss) DNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.12 Score=38.82 Aligned_cols=69 Identities=13% Similarity=0.174 Sum_probs=51.0
Q ss_pred EEEEEeeeecCC--CceEEEEEEeCC-eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEE
Q 013865 109 IRGRVHTTRPVG--NKLAFVVVRERV-STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (435)
Q Consensus 109 v~GrV~~~R~~G--~kl~Fl~Lrd~~-~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi 185 (435)
|.|.|.+++... +.++++.|.|++ +.+.+++..+ ....+...+..|++|.|.|.+.... +...+
T Consensus 2 v~g~v~~~~~~~~~~~~~~~~l~D~~~~~i~~~~~~~------~~~~~~~~~~~g~~v~v~g~v~~~~-------~~~~l 68 (75)
T cd03524 2 IVGIVVAVEEIRTEGKVLIFTLTDGTGGTIRVTLFGE------LAEELENLLKEGQVVYIKGKVKKFR-------GRLQL 68 (75)
T ss_pred eEEEEEeecccccCCeEEEEEEEcCCCCEEEEEEEch------HHHHHHhhccCCCEEEEEEEEEecC-------CeEEE
Confidence 678888887654 578999999999 9999999853 1223446799999999999996421 34666
Q ss_pred EEeEE
Q 013865 186 QIKKL 190 (435)
Q Consensus 186 ~v~~i 190 (435)
.+.++
T Consensus 69 ~~~~~ 73 (75)
T cd03524 69 IVESI 73 (75)
T ss_pred Eeeee
Confidence 66543
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA contains six OB folds, which are involved in ssDNA binding and in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. This family also includes OB folds similar to those found in Escherichia coli SSB, the wedge domain of E. coli RecG (a branched-DNA-specific helicase), E. coli ssDNA specific exodeoxyribonuclease VII large subunit, Pyroco |
| >TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.047 Score=58.32 Aligned_cols=117 Identities=16% Similarity=0.081 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHh-hcCCeEEeeCceeeccCC---CCC----c-ceeEecc-------C-----------------
Q 013865 246 GIFRIQSQVGNIFRQFL-LSENFVEIHTPKLIAGSS---EGG----S-AVFRLDY-------K----------------- 292 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl-~~~gF~EV~TP~l~~~~~---egg----a-~~F~v~~-------~----------------- 292 (435)
..+++..++.+.+.+++ .+.||.||.+|.|++... +|- . +.|.|.. |
T Consensus 221 ~ga~L~rAL~~~~ld~~~~k~Gy~ev~fP~LIp~e~l~k~ghl~gF~~e~y~Vt~~~~d~d~~~~f~~~~~~~~eipi~~ 300 (520)
T TIGR00415 221 KITALFRALEEFFIEEIVKKIGFQECLFPKLIPLDIMNKMRYLEGLPEGMYYCCAPKRDPELFEEFKNELIIKKEIPIDK 300 (520)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCeEEeCCcEecHHHHcccCCCCCCchhheEEecCCCCcchhhcccccccccccccccc
Confidence 45667788899997655 456999999999986542 111 1 1344421 0
Q ss_pred -----C-CceeeccChHHHHhhhcc------CCC-ceeEEEe-cceecCCC--CCCccccccccceeeeeccccHHHHHH
Q 013865 293 -----G-QSACLAQSPQLHKQMSIC------GDF-GRVFETG-PVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMD 356 (435)
Q Consensus 293 -----~-~~~~L~~Spql~lq~~i~------~g~-~rVfeIg-p~FR~E~s--~t~rHl~EFt~lE~e~a~~~~~~d~m~ 356 (435)
. .+++|+-+.+..+=.+.. .++ -|+|++. +|||.|.. .+..=+-||+|.|.-. +.+ .++..+
T Consensus 301 L~~~le~~~~vL~PTSE~ply~~~a~~Ils~~dLPlk~~~~s~~CFR~EaGstrGL~RvhEF~kvE~v~-~~t-pEea~e 378 (520)
T TIGR00415 301 LKNGIKDPGYVIAPAQCEPFYQFFEGEVIDAEDKPIKFFDRSGWTYRWEAGGAKGLDRVHEFLRVECVW-IAE-PEETEE 378 (520)
T ss_pred ccccccCCceEEeCccHHHHHHHHhccccChhhCCeeEEEEecCeEeCCCCCCCCCceeeEEEEEEEEE-EeC-HHHHHH
Confidence 1 156687776655432222 233 3788845 79999983 3344456999999977 665 788888
Q ss_pred HHHHHHHH
Q 013865 357 IVDRLFVT 364 (435)
Q Consensus 357 ~~e~li~~ 364 (435)
..++++..
T Consensus 379 ~~e~mle~ 386 (520)
T TIGR00415 379 IRDKTLEL 386 (520)
T ss_pred HHHHHHHH
Confidence 88888754
|
The seryl-tRNA synthetases from a few of the Archaea, represented by this model, are very different from the set of mutually more closely related seryl-tRNA synthetases from Eubacteria, Eukaryotes, and other Archaea. Although distantly homologous, the present set differs enough not to be recognized by the pfam model tRNA-synt_2b that recognizes the remainder of seryl-tRNA synthetases among oither class II amino-acyl tRNA synthetases. |
| >PRK00960 seryl-tRNA synthetase; Provisional | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.02 Score=61.54 Aligned_cols=117 Identities=15% Similarity=0.162 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHHHHH-hhcCCeEEeeCceeeccCC---CCCc-----ceeEeccCC--Cc------eeecc--------
Q 013865 246 GIFRIQSQVGNIFRQF-LLSENFVEIHTPKLIAGSS---EGGS-----AVFRLDYKG--QS------ACLAQ-------- 300 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~f-l~~~gF~EV~TP~l~~~~~---egga-----~~F~v~~~~--~~------~~L~~-------- 300 (435)
.-.++..++.+++++. +...||.||.||.|..... .|-- +.|.|.-++ .+ .||..
T Consensus 221 ~Ga~L~~aL~~~i~d~~~~k~Gyeev~~P~Li~~ell~ksGhl~~F~e~my~V~~~~~d~e~~~~~~~~l~~T~Evpl~~ 300 (517)
T PRK00960 221 PMTKLFRAFEKLVIEEVLKPLGFDECLFPKLIPLEVMYKMRYLEGLPEGMYYVCPPKRDPEYFEEFVDEMMVKKEVPIEK 300 (517)
T ss_pred hHHHHHHHHHHHHHHhhHhhcCCeEEECCcccCHHHHhhcCCccCChhhceEeeccccccccccchhhhccccccccccc
Confidence 4567778899999887 4566999999999986431 1211 245553211 00 23221
Q ss_pred ----------------ChH---HHHhhhcc-CCCc-eeEE-EecceecCC--CCCCccccccccceeeeeccccHHHHHH
Q 013865 301 ----------------SPQ---LHKQMSIC-GDFG-RVFE-TGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMD 356 (435)
Q Consensus 301 ----------------Spq---l~lq~~i~-~g~~-rVfe-Igp~FR~E~--s~t~rHl~EFt~lE~e~a~~~~~~d~m~ 356 (435)
-|- +|....+. .++. |+|+ .|+|||+|. .++..=+-||+|.|.- .|+. .+++.+
T Consensus 301 ~~~~L~~~~yvLrPa~Cp~~y~~~~~~ils~rdLPLrl~e~sG~cFR~EsGs~~GL~RV~eF~kvE~h-~f~t-pEqs~e 378 (517)
T PRK00960 301 LKEKLRDPGYVLAPAQCEPFYQFFQGETVDVDELPIKFFDRSGWTYRWEGGGAHGLERVNEFHRIEIV-WLGT-PEQVEE 378 (517)
T ss_pred cccccccccccccccCcHHHHHHHhCCcCChhhCCHHHhhccCCceeCCCCCCCCCcccceeEEEEEE-EEeC-HHHHHH
Confidence 122 22222221 1221 7899 669999996 2333345699999997 6765 788888
Q ss_pred HHHHHHHH
Q 013865 357 IVDRLFVT 364 (435)
Q Consensus 357 ~~e~li~~ 364 (435)
..++++.+
T Consensus 379 e~e~ll~~ 386 (517)
T PRK00960 379 IRDELLKY 386 (517)
T ss_pred HHHHHHHH
Confidence 88888844
|
|
| >cd04478 RPA2_DBD_D RPA2_DBD_D: A subfamily of OB folds corresponding to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=95.79 E-value=0.11 Score=42.55 Aligned_cols=78 Identities=13% Similarity=0.164 Sum_probs=57.5
Q ss_pred EEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEE
Q 013865 107 VLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQ 186 (435)
Q Consensus 107 V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~ 186 (435)
|++-|+|.++...+..+. +.|.|++++|-+.+-......+ ......+..|++|.|.|.+..-. +...|.
T Consensus 2 v~~vG~V~~~~~~~~~~~-~tL~D~TG~I~~~~W~~~~~~~---~~~~~~~~~g~~v~v~G~v~~~~-------g~~ql~ 70 (95)
T cd04478 2 VTLVGVVRNVEEQSTNIT-YTIDDGTGTIEVRQWLDDDNDD---SSEVEPIEEGTYVRVFGNLKSFQ-------GKKSIM 70 (95)
T ss_pred EEEEEEEEeeeEcccEEE-EEEECCCCcEEEEEeCCCCCcc---cccccccccCCEEEEEEEEcccC-------CeeEEE
Confidence 789999999999886655 5899999999999875332100 01135799999999999986421 457788
Q ss_pred EeEEEEeec
Q 013865 187 IKKLYCVSR 195 (435)
Q Consensus 187 v~~i~vls~ 195 (435)
+..+..+..
T Consensus 71 i~~i~~v~d 79 (95)
T cd04478 71 AFSIRPVTD 79 (95)
T ss_pred EEEEEEeCC
Confidence 888877654
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle dependent manner in response to DNA dam |
| >cd04482 RPA2_OBF_like RPA2_OBF_like: A subgroup of uncharacterized archaeal OB folds with similarity to the OB fold of the central ssDNA-binding domain (DBD)-D of human RPA2 (also called RPA32) | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.095 Score=43.31 Aligned_cols=75 Identities=23% Similarity=0.317 Sum_probs=54.5
Q ss_pred EEEEEEEeeeec--CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEE
Q 013865 107 VLIRGRVHTTRP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (435)
Q Consensus 107 V~v~GrV~~~R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lE 184 (435)
.+|.|.|.+.+. .|.. +|+.|.|+++.|.|++..... .+......|..||.|.|.|.+..- + .
T Consensus 1 ~~v~GeVs~~~~~~~sGH-~yFtlkD~~~~i~cv~f~~~g----~~~~~~~~l~~Gd~V~v~G~v~~y---------~-q 65 (91)
T cd04482 1 YRVTGKVVEEPRTIEGGH-VFFKISDGTGEIDCAAYEPTK----EFRDVVRLLIPGDEVTVYGSVRPG---------T-T 65 (91)
T ss_pred CEEEEEEeCCeecCCCCC-EEEEEECCCcEEEEEEECccc----ccccccCCCCCCCEEEEEEEEecC---------C-E
Confidence 379999998754 3425 788999999999999875421 011233579999999999998542 1 5
Q ss_pred EEEeEEEEeecC
Q 013865 185 VQIKKLYCVSRA 196 (435)
Q Consensus 185 i~v~~i~vls~~ 196 (435)
|.++++.+++-.
T Consensus 66 l~ve~l~~~glg 77 (91)
T cd04482 66 LNLEKLRVIRLA 77 (91)
T ss_pred EEEEEEEECCCc
Confidence 888888887643
|
RPA2 is a subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The major DNA binding activity of RPA is associated with RPA1 DBD-A and DBD-B; RPA2 DBD-D is a weak ssDNA-binding domain. RPA2 DBD-D is also involved in trimerization. The ssDNA binding mechanism is believed to be multistep and to involve conformational change. N-terminal to human RPA2 DBD-D is a domain containing all the known phosphorylation sites of RPA. Human RPA2 is phosphorylated in a cell cycle depende |
| >COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.39 E-value=0.049 Score=57.13 Aligned_cols=117 Identities=17% Similarity=0.238 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcc---eeEeccC---CCceeeccChHH-----HHhhhcc-CC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSA---VFRLDYK---GQSACLAQSPQL-----HKQMSIC-GD 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~---~F~v~~~---~~~~~L~~Spql-----~lq~~i~-~g 313 (435)
.+.++--++++++=++..++||.|+.+|.|+...+.-|.- -|.=+.| +.++||.-..+. |-...+- ..
T Consensus 172 ~~a~L~rAL~~f~ld~~~~~Gf~e~~~P~lv~~e~m~gtgqlpkf~e~~y~v~~~~~~LipTaEvpl~~l~~~Eil~~~~ 251 (429)
T COG0172 172 KGARLERALIQFMLDLHTKHGFTEVLPPYLVNLESMFGTGQLPKFEEDLYKVEDPDLYLIPTAEVPLTNLHRDEILDEED 251 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHcCceEeeCceeecHHHhhccCCCCCCcccceEecCCCEEEEecchhhhHHhhccccccccc
Confidence 4666677888999999999999999999998654332221 1322222 226788765543 3333332 22
Q ss_pred C-ceeEEEecceecCCCCCC------ccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 314 F-GRVFETGPVFRAEDSYTH------RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 314 ~-~rVfeIgp~FR~E~s~t~------rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
+ -+.+-.+||||.|.+... .-.-+|..+|.- .|.. .++-....|+|+..
T Consensus 252 LP~k~~~~S~cFR~EAGs~GrdtrGliRvHQF~KVE~v-~~~~-Pe~S~~~~E~m~~~ 307 (429)
T COG0172 252 LPIKYTAYSPCFRSEAGSAGKDTRGLIRVHQFDKVELV-VITK-PEESEEELEEMLGN 307 (429)
T ss_pred CCeeeEEEChhhhcccccccccccceeeeeeeeeEEEE-EEeC-cchhHHHHHHHHHH
Confidence 3 367778999999964211 123389999863 2332 45555555555543
|
|
| >cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1) | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.52 Score=36.94 Aligned_cols=64 Identities=13% Similarity=0.197 Sum_probs=47.9
Q ss_pred cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeec
Q 013865 118 PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (435)
Q Consensus 118 ~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~ 195 (435)
..|+.++++.|.|+++.+.+++..... .....+..|.+|.|.|.+..- .+..+|.+.++..+..
T Consensus 15 k~g~~~~~~~l~D~tg~i~~~~f~~~~-------~~~~~l~~g~~v~v~G~v~~~-------~~~~~l~~~~i~~l~~ 78 (83)
T cd04492 15 KNGKPYLALTLQDKTGEIEAKLWDASE-------EDEEKFKPGDIVHVKGRVEEY-------RGRLQLKIQRIRLVTE 78 (83)
T ss_pred cCCCcEEEEEEEcCCCeEEEEEcCCCh-------hhHhhCCCCCEEEEEEEEEEe-------CCceeEEEEEEEECCc
Confidence 346679999999999999999974211 224679999999999999641 1347888888876543
|
Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases. |
| >cd04474 RPA1_DBD_A RPA1_DBD_A: A subfamily of OB folds corresponding to the second OB fold, the ssDNA-binding domain (DBD)-A, of human RPA1 (also called RPA70) | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.23 Score=41.85 Aligned_cols=86 Identities=14% Similarity=0.127 Sum_probs=58.3
Q ss_pred eccccCCCCCCEEEEEEEEee---ee---c---CCCceEEEEEEeC-CeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEE
Q 013865 95 VGALNGSLKDQEVLIRGRVHT---TR---P---VGNKLAFVVVRER-VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (435)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~---~R---~---~G~kl~Fl~Lrd~-~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~ 164 (435)
|.+|.+.. ..++|+|||.+ +| . .| ++.-++|.|. ++.|+|.+-.. ...+|...|..|+++.
T Consensus 2 I~~L~p~~--~~~~I~~rV~~k~~~~~f~~~~~~g-~~~~~~l~De~~~~I~~t~~~~------~~~~f~~~l~eG~vy~ 72 (104)
T cd04474 2 ISSLNPYQ--NKWTIKARVTNKSDIRTWSNARGEG-KLFSFDLLDEDGGEIRATFFND------AVDKFYDLLEVGKVYY 72 (104)
T ss_pred hhHccCCC--CcEEEEEEEeeccccccccCCCCCc-EEEEEEEEECCCCEEEEEEehH------HHHHhhcccccccEEE
Confidence 34555432 35889999974 33 2 25 7888999999 89999999742 2345778899999999
Q ss_pred EEEEEecCCcc-cCCCceeEEEEEeE
Q 013865 165 VIGVVSVPDVE-IKGATQQVEVQIKK 189 (435)
Q Consensus 165 V~G~v~~~~~~-~~~~t~~lEi~v~~ 189 (435)
|.|--+++..+ -+.....+||....
T Consensus 73 i~~~~V~~a~~~y~~~~~~yeI~f~~ 98 (104)
T cd04474 73 ISKGSVKVANKKFNTLKNDYEITFNR 98 (104)
T ss_pred EeccEEeeccccCCCCCCcEEEEECC
Confidence 99755444322 22333568887764
|
RPA1 is the large subunit of Replication protein A (RPA). RPA is a nuclear ssDNA-binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). In addition to DBD-A, RPA1 contains three other OB folds: DBD-B, DBD-C, and RPA1N. The major DNA binding activity of human RPA (hRPA) and Saccharomyces cerevisiae RPA (ScRPA) is associated with DBD-A and DBD-B of RPA1. RPA1 DBD-C is involved in trimerization. The ssDNA-binding mechanism is believed to be multistep and to involve conformational change. Although ScRPA and the hRPA have similar ssDNA-binding properties, they differ funct |
| >KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.094 Score=53.42 Aligned_cols=122 Identities=22% Similarity=0.300 Sum_probs=78.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----C---C-CCcceeEec-cCCCceeeccChHHHHhhhccCCC---
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---E-GGSAVFRLD-YKGQSACLAQSPQLHKQMSICGDF--- 314 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~---e-gga~~F~v~-~~~~~~~L~~Spql~lq~~i~~g~--- 314 (435)
-.|...++++.++.-|++-|=.+|.-|+|.+.. + + -|++.|.+. --|+.++|+-.-|=-.-.+|+.-.
T Consensus 51 g~R~~~K~~~~l~~~mqs~Ga~kIslp~ls~~~LWekTgRw~~~gsEl~rl~Dr~gkq~cL~pThEE~iT~lmat~~~ls 130 (457)
T KOG2324|consen 51 GLRVLNKLCRLLDNEMQSGGAQKISLPILSSKELWEKTGRWDAMGSELFRLHDRKGKQMCLTPTHEEDITALMATYIPLS 130 (457)
T ss_pred hHHHHHHHHHHHHHHHHhccCeeEeecccChHHHHHhcCcccccchhheEeeccCCCEeccCCchHHHHHHHHHhcCccc
Confidence 345667899999999999999999999997543 1 1 267889884 477888887544433222222211
Q ss_pred -----ceeEEEecceecCCC--CCCccccccccceeeeeccccHHHHHHHH---HHHHHHHHhhh
Q 013865 315 -----GRVFETGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVMDIV---DRLFVTIFDGL 369 (435)
Q Consensus 315 -----~rVfeIgp~FR~E~s--~t~rHl~EFt~lE~e~a~~~~~~d~m~~~---e~li~~i~~~~ 369 (435)
=+||+||+-||+|-- .+.----||.|=|+|- |..+-++.|.-- .+.-..||+.+
T Consensus 131 ykqlPi~vYQigrKfRDElrpRfGLlRgREFlMKDmYs-Fd~~~etA~qTy~~v~~aY~~iFkqL 194 (457)
T KOG2324|consen 131 YKQLPIRVYQIGRKFRDELRPRFGLLRGREFLMKDMYS-FDSDEETAQQTYQLVDQAYDRIFKQL 194 (457)
T ss_pred cccCcEEeeeechhhhhccCccccchhhHHHHHhhhhc-ccCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 279999999999951 1222336999999985 433455555432 22233455544
|
|
| >PRK07374 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.16 Score=59.86 Aligned_cols=86 Identities=14% Similarity=0.209 Sum_probs=63.6
Q ss_pred eccccCCCCCCEEEEEEEEeeeec----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 95 VGALNGSLKDQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 95 i~~l~~~~~g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
+.++.....|.+|+|.|.|.++|. .|+.|+|+.|.|.++.+.+++..+ ...++...|..|.+|.|+|.|.
T Consensus 991 ~~~l~~~~~~~~v~v~g~i~~~k~~~Tk~G~~maf~~leD~tg~~e~vvFp~------~y~~~~~~l~~~~~~~v~g~v~ 1064 (1170)
T PRK07374 991 LSSLEEQPDKAKVSAIAMIPEMKQVTTRKGDRMAILQLEDLTGSCEAVVFPK------SYERLSDHLMTDTRLLVWAKVD 1064 (1170)
T ss_pred HHHHhcccCCCEEEEEEEEEEeEecccCCCCEEEEEEEEECCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEEE
Confidence 344433345889999999999864 366799999999999999999843 2334556799999999999996
Q ss_pred cCCcccCCCceeEEEEEeEEEEe
Q 013865 171 VPDVEIKGATQQVEVQIKKLYCV 193 (435)
Q Consensus 171 ~~~~~~~~~t~~lEi~v~~i~vl 193 (435)
..+ +.+.|.+.++.-+
T Consensus 1065 ~~~-------~~~~~~~~~i~~l 1080 (1170)
T PRK07374 1065 RRD-------DRVQLIIDDCREI 1080 (1170)
T ss_pred ecC-------CeEEEEEeeeecH
Confidence 421 3466777776543
|
|
| >cd04483 hOBFC1_like hOBFC1_like: A subfamily of OB folds similar to that found in human OB fold containing protein 1 (hOBFC1) | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.44 Score=39.44 Aligned_cols=76 Identities=17% Similarity=0.185 Sum_probs=52.0
Q ss_pred EEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCc-------------HHHH-HHHhcCCCCcEEEEEEEEecCCc
Q 013865 109 IRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVS-------------KEMV-RFVRSLSNESIVDVIGVVSVPDV 174 (435)
Q Consensus 109 v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s-------------~~~~-k~~~~l~~esiV~V~G~v~~~~~ 174 (435)
|-|+|.+++..... .-+.|.|+++.|-|++=......+ ..|. +....+..|++|.|.|.+..-.
T Consensus 2 ivG~V~sv~~~~~~-~~~tLdDgTG~Ie~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~G~vvrV~G~i~~fr- 79 (92)
T cd04483 2 ILGTVVSRRERETF-YSFGVDDGTGVVNCVCWKNLSYAEVSSRSDAARILKSALMALKQAKVLEIGDLLRVRGSIRTYR- 79 (92)
T ss_pred eEEEEEEEEecCCe-EEEEEecCCceEEEEEEcCcCcccccccccccccccccccccccccccCCCCEEEEEEEEeccC-
Confidence 67999999988745 456899999999999865422000 0010 2345799999999999997421
Q ss_pred ccCCCceeEEEEEeEEEE
Q 013865 175 EIKGATQQVEVQIKKLYC 192 (435)
Q Consensus 175 ~~~~~t~~lEi~v~~i~v 192 (435)
+...|.++.++.
T Consensus 80 ------g~~ql~i~~~~~ 91 (92)
T cd04483 80 ------GEREINASVVYK 91 (92)
T ss_pred ------CeeEEEEEEEEe
Confidence 356677776653
|
Members of this group belong to the Replication protein A subunit 2 (RPA2) family of OB folds. RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). The OB fold domain of RPA2 has dual roles in ssDNA binding and trimerization. |
| >PRK05673 dnaE DNA polymerase III subunit alpha; Validated | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.18 Score=59.22 Aligned_cols=88 Identities=20% Similarity=0.306 Sum_probs=65.7
Q ss_pred EeccccCCCCCCEEEEEEEEeeeecC----CCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEE
Q 013865 94 VVGALNGSLKDQEVLIRGRVHTTRPV----GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~----G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v 169 (435)
.+.++.....|..|.+.|-|.++|.. |+.++|+.|.|.++.+.+++..+ ...++...|..|++|.|+|.|
T Consensus 967 ~~~~l~~~~~g~~V~v~G~I~~vk~~~TKkG~~mafltLeD~TG~iEvviFp~------~ye~~~~~L~~g~iV~V~GkV 1040 (1135)
T PRK05673 967 RLADLEPTEGGSVVTVAGLVVSVRRRVTKRGNKMAIVTLEDLSGRIEVMLFSE------ALEKYRDLLEEDRIVVVKGQV 1040 (1135)
T ss_pred CHHHHhccccCceEEEEEEEEEEEecccCCCCeEEEEEEEeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEE
Confidence 34444333458899999999998753 66799999999999999999842 233556779999999999999
Q ss_pred ecCCcccCCCceeEEEEEeEEEEee
Q 013865 170 SVPDVEIKGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 170 ~~~~~~~~~~t~~lEi~v~~i~vls 194 (435)
...+ +.+.|.++++.-+.
T Consensus 1041 e~~~-------~~~qlii~~I~~L~ 1058 (1135)
T PRK05673 1041 SFDD-------GGLRLTAREVMDLE 1058 (1135)
T ss_pred EecC-------CeEEEEEeecccHH
Confidence 6421 34677777776554
|
|
| >PF04076 BOF: Bacterial OB fold (BOF) protein; InterPro: IPR005220 Proteins in this entry have an OB-fold fold (oligonucleotide/oligosaccharide binding motif) | Back alignment and domain information |
|---|
Probab=94.19 E-value=0.33 Score=41.16 Aligned_cols=79 Identities=14% Similarity=0.232 Sum_probs=51.4
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEEEEEec
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSV 171 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~G~v~~ 171 (435)
+.+.++.....+..|++.|+|.+.-..- + |.++|+++.|+|-++... |. ..+++++.|.|.|.|-+
T Consensus 23 ~TV~~a~~~~Dd~~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~~---------w~g~~vt~~~~Vri~GeVDk 89 (103)
T PF04076_consen 23 TTVAQAKNAKDDTPVTLEGNIVKQLGDD-K---YLFRDATGEIEVEIDDDV---------WRGQTVTPDDKVRISGEVDK 89 (103)
T ss_dssp --HHHHTTS-SSEEEEEEEEEEEEEETT-E---EEEEETTEEEEEE--GGG---------STT----TTSEEEEEEEEEE
T ss_pred EeHHHHhhCcCCCeEEEEEEEEEEecCC-E---EEEECCCCcEEEEEChhh---------cCCcccCCCCEEEEEEEEeC
Confidence 3444555567799999999987754332 3 789999999999988541 22 35899999999999974
Q ss_pred CCcccCCCceeEEEEEeEEE
Q 013865 172 PDVEIKGATQQVEVQIKKLY 191 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~ 191 (435)
.. ...+|.|..|.
T Consensus 90 ~~-------~~~~IdV~~I~ 102 (103)
T PF04076_consen 90 DW-------NKTEIDVDRIE 102 (103)
T ss_dssp ET-------TEEEEEEEEEE
T ss_pred CC-------CceEEEEEEEE
Confidence 32 24778777764
|
Analysis of the predicted nucleotide-binding site of the OB-fold suggests that they lack nucleic acid-binding properties. They contain an predicted N-terminal signal peptide which indicates that they localise to the periplasm where they may function to bind proteins, small molecules, or other typical OB-fold ligands. As hypothesised for the distantly related OB-fold containing bacterial enterotoxins, the loss of nucleotide-binding function and the rapid evolution of the OB-fold ligand-binding site may be associated with the presence of members in mobile genetic elements and their potential role in bacterial pathogenicity [].; PDB: 1NNX_A. |
| >COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.11 Score=55.33 Aligned_cols=29 Identities=24% Similarity=0.597 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHHhhc--CCeEEeeCceeec
Q 013865 249 RIQSQVGNIFRQFLLS--ENFVEIHTPKLIA 277 (435)
Q Consensus 249 ~~rs~i~~~~r~fl~~--~gF~EV~TP~l~~ 277 (435)
.++..|.++.|++|-. .+++||+||+|.+
T Consensus 41 ~LK~nI~~~Wrk~fV~~~e~~~eIdtpii~p 71 (558)
T COG0423 41 ELKNNIKEAWRKSFVTEREDVVEIDTPIILP 71 (558)
T ss_pred HHHHHHHHHHHHHHeeccCCeEEecccccCc
Confidence 4567899999999976 5899999999975
|
|
| >PRK06920 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=93.98 E-value=0.33 Score=56.89 Aligned_cols=79 Identities=16% Similarity=0.279 Sum_probs=60.9
Q ss_pred CCCCEEEEEEEEeeeec----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccC
Q 013865 102 LKDQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (435)
Q Consensus 102 ~~g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~ 177 (435)
..|..|+|.|.|.++|. .|+.|+|+.|.|.++.+.+++..+ ...++...|..+.+|.|+|.+...
T Consensus 941 ~~~~~v~v~g~i~~~~~~~tk~g~~maf~~leD~tg~~e~~vFp~------~y~~~~~~l~~~~~~~v~G~v~~~----- 1009 (1107)
T PRK06920 941 HKKKVQRAIVYITSVKVIRTKKGQKMAFITFCDQNDEMEAVVFPE------TYIHFSDKLQEGAIVLVDGTIELR----- 1009 (1107)
T ss_pred cCCCEEEEEEEEEEeEeecCCCCCeEEEEEEeeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEec-----
Confidence 45789999999999864 367899999999999999999843 233455679999999999999642
Q ss_pred CCceeEEEEEeEEEEe
Q 013865 178 GATQQVEVQIKKLYCV 193 (435)
Q Consensus 178 ~~t~~lEi~v~~i~vl 193 (435)
.+...|.+.++.-+
T Consensus 1010 --~~~~~~~~~~i~~l 1023 (1107)
T PRK06920 1010 --NHKLQWIVNGLYPL 1023 (1107)
T ss_pred --CCcEEEEEeecccH
Confidence 13466777776543
|
|
| >PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed | Back alignment and domain information |
|---|
Probab=93.95 E-value=0.29 Score=53.28 Aligned_cols=111 Identities=17% Similarity=0.238 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCC--C----CCc-ceeEe-cc-CCCceeeccC--hHHHHhhhcc-CCC--ceeE
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS--E----GGS-AVFRL-DY-KGQSACLAQS--PQLHKQMSIC-GDF--GRVF 318 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e----gga-~~F~v-~~-~~~~~~L~~S--pql~lq~~i~-~g~--~rVf 318 (435)
.+.+.+|++|...||.|+-|..+++..- + ... .+..+ |- -..-.+||.| |.|..-..-- .+. -|+|
T Consensus 363 ~~~~~ir~~L~~~Gf~Ev~tys~~s~~~~~~~~~~~~~~~~i~l~NPls~e~svLRtsLlpgLL~~~~~N~~~~~~~~lF 442 (552)
T PRK09616 363 KLERAIRDLMVGLGFQEVMNFTLTSEEVLFEKMNLEPEEDYVEVLNPISEDYTVVRTSLLPSLLEFLSNNKHREYPQKIF 442 (552)
T ss_pred HHHHHHHHHHHhCCcceeccceEechHHHHHHhCCCCCCCeEEEcCCCccchheEeccchHHHHHHHHhccCCCCCeeEE
Confidence 4566789999999999999999985411 1 011 12222 22 2344577766 4444332110 111 3899
Q ss_pred EEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHH
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVT 364 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~ 364 (435)
|||+||+.+.. +..|..|++++-+-++.. -++.|+..+++.++..
T Consensus 443 EiG~Vf~~~~~-~~~~~~e~~~l~~~~~g~~~df~dlKg~ve~ll~~ 488 (552)
T PRK09616 443 EIGDVVLIDES-TETGTRTERKLAAAIAHSEASFTEIKSVVQALLRE 488 (552)
T ss_pred EeeEEEecCCc-cccCcchhhEEEEEEECCCCCHHHHHHHHHHHHHH
Confidence 99999998652 345778999998877763 1488888888888864
|
|
| >cd04490 PolII_SU_OBF PolII_SU_OBF: A subfamily of OB folds corresponding to the OB fold found in Pyrococcus abyssi DNA polymerase II (PolII) small subunit | Back alignment and domain information |
|---|
Probab=93.92 E-value=1.1 Score=35.96 Aligned_cols=57 Identities=23% Similarity=0.288 Sum_probs=44.6
Q ss_pred EEEEEEEeeeec--CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH--HHHhcCCCCcEEEEEEEEec
Q 013865 107 VLIRGRVHTTRP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV--RFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 107 V~v~GrV~~~R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~--k~~~~l~~esiV~V~G~v~~ 171 (435)
|.++|-|.++|. .| +- |+.|-|.++++.+++.... .. ++...|..+.+|.|+|.+..
T Consensus 2 v~i~GiI~~v~~TK~g-~~-~~~leD~~G~~Ev~~F~~~------~~~~~~~~~l~~d~~v~v~g~v~~ 62 (79)
T cd04490 2 VSIIGMVNDVRSTKNG-HR-IVELEDTTGRITVLLTKDK------EELFEEAEDILPDEVIGVSGTVSK 62 (79)
T ss_pred EEEEEEEeEEEEcCCC-CE-EEEEECCCCEEEEEEeCch------hhhhhhhhhccCCCEEEEEEEEec
Confidence 678888888872 24 34 9999999999999998542 23 45667999999999999843
|
PolII is a family D DNA polymerase, having a 3-prime to 5-prime exonuclease activity. P. abyssi PolII is heterodimeric. The large subunit appears to be the polymerase, and the small subunit may be the exonuclease. The small subunit contains a calcineurin-like phosphatase superfamily domain C-terminal to this OB-fold domain. |
| >PRK05672 dnaE2 error-prone DNA polymerase; Validated | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.32 Score=56.79 Aligned_cols=86 Identities=15% Similarity=0.117 Sum_probs=64.1
Q ss_pred cccCCCCCCEEEEEEEEeeeecC--CCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc
Q 013865 97 ALNGSLKDQEVLIRGRVHTTRPV--GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (435)
Q Consensus 97 ~l~~~~~g~~V~v~GrV~~~R~~--G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~ 174 (435)
+|.....|..|+|+|.|..++.. .++|+|+.|-|.++.+.+++..+ ...++...|..|+++.|+|.+...
T Consensus 946 ~l~~~~~~~~v~v~g~i~~~~~~~TkkGmaf~~leD~~g~~e~~ifp~------~~~~~~~~l~~~~~~~v~g~v~~~-- 1017 (1046)
T PRK05672 946 ELLDVEDGRRVRVAGVVTHRQRPGTASGVTFLTLEDETGMVNVVVWPG------LWERQRREALGARLLLVRGRVQNA-- 1017 (1046)
T ss_pred HHhhccCCCEEEEEEEEEEEEEecCCCceEEEEEecCCCCEEEEECHH------HHHHHHHHhccCCEEEEEEEEEec--
Confidence 44333468899999999987664 33599999999999999999843 233455679999999999999642
Q ss_pred ccCCCceeEEEEEeEEEEeec
Q 013865 175 EIKGATQQVEVQIKKLYCVSR 195 (435)
Q Consensus 175 ~~~~~t~~lEi~v~~i~vls~ 195 (435)
.+.+.|.+.++.-+..
T Consensus 1018 -----~~~~~~~~~~i~~~~~ 1033 (1046)
T PRK05672 1018 -----EGVRHLVADRLEDLSP 1033 (1046)
T ss_pred -----CCeEEEEEeeeechHH
Confidence 1346788888765543
|
|
| >PRK06826 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.48 Score=55.85 Aligned_cols=79 Identities=18% Similarity=0.313 Sum_probs=60.9
Q ss_pred CCCEEEEEEEEeeeec----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCC
Q 013865 103 KDQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (435)
Q Consensus 103 ~g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (435)
.|..|+|.|.|.++|. .|+.|+|+.|.|.++.+.+++..+ ...++...|..|.+|.|+|.+....
T Consensus 990 ~~~~v~v~g~i~~~~~~~tk~G~~maf~~leD~~g~~e~~vfp~------~~~~~~~~l~~~~~~~v~g~v~~~~----- 1058 (1151)
T PRK06826 990 DGDKVIIGGIITEVKRKTTRNNEMMAFLTLEDLYGTVEVIVFPK------VYEKYRSLLNEDNIVLIKGRVSLRE----- 1058 (1151)
T ss_pred CCcEEEEEEEEEEeEeeccCCCCeEEEEEEEECCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEecC-----
Confidence 5789999999999874 366799999999999999999843 3345556799999999999996321
Q ss_pred CceeEEEEEeEEEEe
Q 013865 179 ATQQVEVQIKKLYCV 193 (435)
Q Consensus 179 ~t~~lEi~v~~i~vl 193 (435)
.+.+.|.+.++.-+
T Consensus 1059 -~~~~~~~~~~~~~l 1072 (1151)
T PRK06826 1059 -DEEPKLICEEIEPL 1072 (1151)
T ss_pred -CCceEEEEeeeecH
Confidence 12467777776544
|
|
| >COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.53 E-value=0.1 Score=57.04 Aligned_cols=116 Identities=21% Similarity=0.192 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHHHhhcCCeEEeeCceeeccC---CCCCcc-----eeEeccCCCceeeccCh-----HHHHhhhccC-CC
Q 013865 249 RIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGSA-----VFRLDYKGQSACLAQSP-----QLHKQMSICG-DF 314 (435)
Q Consensus 249 ~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~egga~-----~F~v~~~~~~~~L~~Sp-----ql~lq~~i~~-g~ 314 (435)
.+|..+.+++|.-....||.||.||.|.... ..|... .|.+..-++.+.|+--- +.|+..+.+- .+
T Consensus 221 ~ir~~le~y~~~~~~~~Gy~~V~TP~~~~~~l~~~SGH~~~y~e~mf~~~~~~~~~~lKpmNCpgh~~ifk~~~~SYR~L 300 (589)
T COG0441 221 TIRNLLEDYVRTKLRSYGYQEVKTPVLADLELWELSGHWDNYKEDMFLTESDDREYALKPMNCPGHILIFKSGLRSYREL 300 (589)
T ss_pred cHHHHHHHHHHHHHHhcCceEecCCeeeecccchhccchhhccccceeeccCChhheeeeccCHhHHHHHhcCCcceecc
Confidence 5678899999999999999999999986432 122111 22222222333333211 2344432211 11
Q ss_pred -ceeEEEecceecCCCC---CCccccccccceeeeeccccHHHHHHHHHHHHHHHH
Q 013865 315 -GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (435)
Q Consensus 315 -~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 366 (435)
-|.+|+|.|||.|.|. +.+=+-.|||=|.-+ |+. .+.+.+.+.+.+..+.
T Consensus 301 P~r~~E~g~v~R~E~SGal~GL~RvR~ftqdDaHi-fc~-~dQi~~E~~~~~~~i~ 354 (589)
T COG0441 301 PLRLAEFGYVYRYEKSGALHGLMRVRGFTQDDAHI-FCT-PDQIKDEFKGILELIL 354 (589)
T ss_pred chhhhhcceeecccCcchhhccccccceeecccce-ecc-HHHHHHHHHHHHHHHH
Confidence 2899999999999862 234467899988744 333 3455555444444433
|
|
| >PRK07279 dnaE DNA polymerase III DnaE; Reviewed | Back alignment and domain information |
|---|
Probab=93.06 E-value=0.59 Score=54.34 Aligned_cols=75 Identities=12% Similarity=0.244 Sum_probs=57.7
Q ss_pred CCEEEEEEEEeeeec-----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCC
Q 013865 104 DQEVLIRGRVHTTRP-----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (435)
Q Consensus 104 g~~V~v~GrV~~~R~-----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (435)
|..+.+.|+|.++|. .|+.|+|+.|.|.++.+.+++..+ ...++...|..+.+|.|+|.|...
T Consensus 884 ~~~~~~~~~i~~~~~~~tk~~g~~maf~~leD~~g~ie~~vFp~------~y~~~~~~l~~~~~~~v~G~v~~~------ 951 (1034)
T PRK07279 884 NSEATILVQIQSIRVIRTKTKGQQMAFLSVTDTKKKLDVTLFPE------TYRQYKDELKEGKFYYLKGKIQER------ 951 (1034)
T ss_pred CCcceEEEEEEEEEEEEEcCCCCeEEEEEEeeCCCcEEEEECHH------HHHHHHHHhccCCEEEEEEEEEec------
Confidence 677889999987652 577899999999999999999843 334556779999999999999642
Q ss_pred CceeEEEEEeEEE
Q 013865 179 ATQQVEVQIKKLY 191 (435)
Q Consensus 179 ~t~~lEi~v~~i~ 191 (435)
.+.+.|.++++.
T Consensus 952 -~~~~~l~~~~i~ 963 (1034)
T PRK07279 952 -DGRLQMVLQQIQ 963 (1034)
T ss_pred -CCeeEEEEeeee
Confidence 134667666664
|
|
| >TIGR00156 conserved hypothetical protein TIGR00156 | Back alignment and domain information |
|---|
Probab=93.00 E-value=0.71 Score=40.58 Aligned_cols=79 Identities=13% Similarity=0.247 Sum_probs=57.3
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHh-cCCCCcEEEEEEEEec
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIVDVIGVVSV 171 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~-~l~~esiV~V~G~v~~ 171 (435)
+.+++......+..|++.|.|...-..- . |.+||++++|.|-++.. .|.. .+.+++-|.|.|.|-+
T Consensus 46 ~tV~~a~~~~Ddt~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~---------~w~G~~v~p~d~V~I~GeVDk 112 (126)
T TIGR00156 46 MTVDFAKSMHDGASVTLRGNIISHIGDD-R---YVFRDKSGEINVVIPAA---------VWNGREVQPKDMVNISGSLDK 112 (126)
T ss_pred EeHHHHhhCCCCCEEEEEEEEEEEeCCc-e---EEEECCCCCEEEEECHH---------HcCCCcCCCCCEEEEEEEECC
Confidence 4555555567799999999998754432 2 78999999999998742 2443 5889999999999864
Q ss_pred CCcccCCCceeEEEEEeEEE
Q 013865 172 PDVEIKGATQQVEVQIKKLY 191 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~ 191 (435)
.- ...||-|..|.
T Consensus 113 ~~-------~~~~IdV~~I~ 125 (126)
T TIGR00156 113 KS-------APAEVDVTHIQ 125 (126)
T ss_pred CC-------CCeEEEEEEEE
Confidence 21 23677777664
|
As of the last revision, this family consists only of two proteins from Escherichia coli and one from the related species Haemophilus influenzae. |
| >PF10451 Stn1: Telomere regulation protein Stn1; InterPro: IPR018856 The budding yeast protein Stn1 is a DNA-binding protein which has specificity for telomeric DNA | Back alignment and domain information |
|---|
Probab=92.61 E-value=0.45 Score=46.83 Aligned_cols=76 Identities=17% Similarity=0.210 Sum_probs=53.0
Q ss_pred CCEEEEEEEEeeeecC----CCceEEEEEEeCCe--EEEEEEeeCCCC-CcHHHHHHHhcCCCCcEEEEEEEEecCCccc
Q 013865 104 DQEVLIRGRVHTTRPV----GNKLAFVVVRERVS--TVQCLATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEI 176 (435)
Q Consensus 104 g~~V~v~GrV~~~R~~----G~kl~Fl~Lrd~~~--~iQvv~~~~~~~-~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~ 176 (435)
=+.|.|.|.|..+.-. . +-.|+.|-|+++ .|.|++..+... .+. -+..+ .|++|.|.|.+..
T Consensus 66 I~~v~i~G~Vv~~~~~~~~~~-~~~~l~iDD~Sg~~~i~~~~~~~~~~~~~l----~~~~~-~G~~V~VkG~vsr----- 134 (256)
T PF10451_consen 66 IRWVRIVGVVVGIDYKWIENE-DRIILTIDDSSGANTIECKCSKSSYLSMGL----PINDL-IGKVVEVKGTVSR----- 134 (256)
T ss_dssp E-EEEEEEEEEEEEEEE-BBT-CEEEEEEE-SSCS-EEEEEEEHHHHHCCCH----HCTT--TT-EEEEEEEEES-----
T ss_pred cEEEEEEEEEEEEEEEeeccc-ceEEEEEeCCCCceeEEEEEEcccccccCC----CccCC-CCcEEEEEEEEcc-----
Confidence 3579999999998754 4 568899999998 899999864210 111 12345 9999999999972
Q ss_pred CCCceeEEEEEeEEEEee
Q 013865 177 KGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 177 ~~~t~~lEi~v~~i~vls 194 (435)
+..+|.++.|.++.
T Consensus 135 ----~~~ql~ve~i~~~~ 148 (256)
T PF10451_consen 135 ----NERQLDVERIELVR 148 (256)
T ss_dssp ----SSEEEEEEEEEEET
T ss_pred ----CcEEEEEEEEEccC
Confidence 35789999988764
|
Structural profiling has predicted an OB-fold []. This entry represents the N-terminal part of the molecule, which adopts the OB fold. Protection of telomeres by multiple proteins with OB-fold domains is conserved in eukaryotic evolution [].; PDB: 3KF6_A 3KF8_A. |
| >TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.14 Score=55.51 Aligned_cols=30 Identities=27% Similarity=0.540 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHh-hcCCeEEeeCceeec
Q 013865 248 FRIQSQVGNIFRQFL-LSENFVEIHTPKLIA 277 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl-~~~gF~EV~TP~l~~ 277 (435)
..++..|.+.+|++| ...|++||.||+|++
T Consensus 37 ~~lk~ni~~~wr~~~v~~~~~~ei~~~~i~~ 67 (551)
T TIGR00389 37 AVLKNNIKNAWRKFFIKNERVLEIDTPIITP 67 (551)
T ss_pred HHHHHHHHHHHHHHHHhcCCceEeeccccCC
Confidence 457788999999988 478999999999986
|
This model describes a glycyl-tRNA synthetase distinct from the two alpha and two beta chains of the tetrameric E. coli glycyl-tRNA synthetase. This enzyme is a homodimeric class II tRNA synthetase and is recognized by pfam model tRNA-synt_2b, which recognizes His, Ser, Pro, and this set of glycyl-tRNA synthetases. |
| >TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial | Back alignment and domain information |
|---|
Probab=92.45 E-value=0.74 Score=48.82 Aligned_cols=52 Identities=17% Similarity=0.231 Sum_probs=36.9
Q ss_pred eccCCCceeec--cChHHHHhhhccCCCc-------eeEEEecceecCCCCCCcccccccccee
Q 013865 289 LDYKGQSACLA--QSPQLHKQMSICGDFG-------RVFETGPVFRAEDSYTHRHLCEFTGLDV 343 (435)
Q Consensus 289 v~~~~~~~~L~--~Spql~lq~~i~~g~~-------rVfeIgp~FR~E~s~t~rHl~EFt~lE~ 343 (435)
+-|++....|| +|+-.-- +|-.+.+ ++...|.|||.+.. +.+|.|-|.|+|-
T Consensus 101 T~Yi~~~~lLRTHTSa~q~~--~~~~~~~~~~~~~~~~i~~G~VYRrD~i-DatH~p~FHQ~EG 161 (460)
T TIGR00469 101 CYYINEQHLLRAHTSAHELE--CFQGGLDDSDNIKSGFLISADVYRRDEI-DKTHYPVFHQADG 161 (460)
T ss_pred ceEecCCceeCCCCcHHHHH--HHHhccccCCCcceeeEeecceeeCCCC-ccccCccceeeEE
Confidence 34677888888 4552221 2222332 48899999999985 8999999999993
|
Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species. |
| >PRK10053 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.09 E-value=1.1 Score=39.58 Aligned_cols=79 Identities=14% Similarity=0.275 Sum_probs=57.4
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHh-cCCCCcEEEEEEEEec
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIVDVIGVVSV 171 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~-~l~~esiV~V~G~v~~ 171 (435)
+.+.+......+..|++.|.|...= |.. =|.+||+++.|+|-++.. .|.. .+.+.+-|.|.|.|-+
T Consensus 50 ~tV~~a~~~~Dd~~V~L~G~Iv~~l--g~d--~Y~F~D~tG~I~VeID~~---------~w~G~~v~p~~kV~I~GevDk 116 (130)
T PRK10053 50 MTVEQAKTMHDGATVSLRGNLIDHK--GDD--RYVFRDKSGEINVIIPAA---------VFDGREVQPDQMININGSLDK 116 (130)
T ss_pred EEHHHhhcCcCCCeEEEEEEEEEEe--CCc--eEEEECCCCcEEEEeCHH---------HcCCCcCCCCCEEEEEEEECC
Confidence 3555555567799999999997643 322 278999999999998743 2443 6999999999999864
Q ss_pred CCcccCCCceeEEEEEeEEE
Q 013865 172 PDVEIKGATQQVEVQIKKLY 191 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~ 191 (435)
.- ...+|-|..|.
T Consensus 117 ~~-------~~~~IdV~~i~ 129 (130)
T PRK10053 117 KS-------APPVVRVTHLQ 129 (130)
T ss_pred CC-------CCeEEEEEEEe
Confidence 21 24677777764
|
|
| >COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=91.97 E-value=0.6 Score=49.12 Aligned_cols=75 Identities=12% Similarity=0.219 Sum_probs=58.5
Q ss_pred CEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec-CCcccCCCceeE
Q 013865 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV-PDVEIKGATQQV 183 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~-~~~~~~~~t~~l 183 (435)
..|||+|-|.+++...+.-.|+.|.|....|+|++...... +.--.+.-|.-|.|.|.+.. ++ .|.+
T Consensus 24 ~~V~v~GEISn~t~~~sgH~YFtLKD~~A~i~c~mf~~~~~------~l~f~p~eG~~V~v~G~is~Y~~------rG~Y 91 (440)
T COG1570 24 GQVWVRGEISNFTRPASGHLYFTLKDERAQIRCVMFKGNNR------RLKFRPEEGMQVLVRGKISLYEP------RGDY 91 (440)
T ss_pred CeEEEEEEecCCccCCCccEEEEEccCCceEEEEEEcCccc------ccCCCccCCCEEEEEEEEEEEcC------CCce
Confidence 46999999999986655568999999999999999875431 11124789999999999873 33 2578
Q ss_pred EEEEeEEE
Q 013865 184 EVQIKKLY 191 (435)
Q Consensus 184 Ei~v~~i~ 191 (435)
.|.+.++.
T Consensus 92 Qi~~~~~~ 99 (440)
T COG1570 92 QIVAESME 99 (440)
T ss_pred EEEEecCC
Confidence 88888876
|
|
| >COG3111 Periplasmic protein with OB-fold [Function unknown] | Back alignment and domain information |
|---|
Probab=91.84 E-value=1.2 Score=38.95 Aligned_cols=84 Identities=18% Similarity=0.234 Sum_probs=60.8
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEEEE
Q 013865 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGV 168 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~G~ 168 (435)
...+.+.+....+.+..|+++|-|-. ..|.- . |.+||++++|+|.++... |. ..+.+.+-|.|.|.
T Consensus 43 ~~~~TV~~Ak~~~Dda~V~l~GnIv~--qi~~D-~-y~FrD~sGeI~VeIdd~~---------w~g~tv~P~dkV~I~Ge 109 (128)
T COG3111 43 AKVTTVDQAKTLHDDAWVSLEGNIVR--QIGDD-R-YVFRDASGEINVDIDDKV---------WNGQTVTPKDKVRIQGE 109 (128)
T ss_pred cceeEHHHhhccccCCeEEEEeeEEE--eeCCc-e-EEEEcCCccEEEEecccc---------cCCcccCcccEEEEEeE
Confidence 34456665556678999999999865 33322 2 689999999999998542 33 35899999999999
Q ss_pred EecCCcccCCCceeEEEEEeEEEEe
Q 013865 169 VSVPDVEIKGATQQVEVQIKKLYCV 193 (435)
Q Consensus 169 v~~~~~~~~~~t~~lEi~v~~i~vl 193 (435)
|-+-- ...||-|..|..+
T Consensus 110 vDk~~-------~~~eIdV~~I~k~ 127 (128)
T COG3111 110 VDKDW-------NSVEIDVKHIEKL 127 (128)
T ss_pred EcCCC-------ccceeEhhheEec
Confidence 86421 2478888887764
|
|
| >cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.46 Score=44.48 Aligned_cols=109 Identities=21% Similarity=0.283 Sum_probs=61.3
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccC-CC----CCcceeEe-cc-CCCceeeccC--hHHHHhhhc--cCC--CceeEE
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGS-SE----GGSAVFRL-DY-KGQSACLAQS--PQLHKQMSI--CGD--FGRVFE 319 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~-~e----gga~~F~v-~~-~~~~~~L~~S--pql~lq~~i--~~g--~~rVfe 319 (435)
.+.+.+|++|...||.||-|..+++.. .+ +...+.++ |- -..--+||.| |.|..-..- ..+ --|+||
T Consensus 4 ~~~~~ir~~L~~~G~~E~~tys~~~~~~~~~~~~~~~~~i~l~NPis~e~~~lR~sLlp~LL~~~~~N~~~~~~~~~lFE 83 (198)
T cd00769 4 KLERKLRRLLAGLGFQEVITYSLTSPEEAELFDGGLDEAVELSNPLSEEYSVLRTSLLPGLLDALARNLNRKNKPLRLFE 83 (198)
T ss_pred HHHHHHHHHHHHCCCceeecccCCCHHHHHhccCCCCCeEEEcCCCchhHHHHHHHHHHHHHHHHHHHhcCCCCCEeEEE
Confidence 456678999999999999999997541 11 11122222 11 2233456655 333332211 112 239999
Q ss_pred EecceecCCCCCCccccccccceeeeeccc------------cHHHHHHHHHHHHHHH
Q 013865 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKK------------HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 320 Igp~FR~E~s~t~rHl~EFt~lE~e~a~~~------------~~~d~m~~~e~li~~i 365 (435)
||+||..... +..|.+.+=.-++... ++.|+-..++.++..+
T Consensus 84 iG~vf~~~~~----~~~e~~~l~~~~~g~~~~~~w~~~~~~~~f~~~Kg~ve~ll~~l 137 (198)
T cd00769 84 IGRVFLKDED----GPEEEEHLAALLSGNREPESWQGKGRPVDFYDAKGILEALLRAL 137 (198)
T ss_pred eEeEEecCCC----CCcchheEEEEEECCCccccccCCCCccCHhhHHHHHHHHHHHc
Confidence 9999976431 2235554444333321 4777777777777543
|
PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer. While the alpha chain contains a catalytic core domain, the beta chain has a non-catalytic core domain. |
| >cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14) | Back alignment and domain information |
|---|
Probab=91.45 E-value=1.7 Score=36.60 Aligned_cols=55 Identities=22% Similarity=0.238 Sum_probs=41.0
Q ss_pred CCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
..+.|+.|++-|+|.+.+.. .+.....+++.++|.++.. ..+..+-+|.|.|+|.
T Consensus 11 ~~f~gk~V~ivGkV~~~~~~----~~~~~~~Dg~~v~v~l~~~------------~~~~~~~~vEViG~V~ 65 (101)
T cd04479 11 SQFVGKTVRIVGKVEKVDGD----SLTLISSDGVNVTVELNRP------------LDLPISGYVEVIGKVS 65 (101)
T ss_pred HhhCCCEEEEEEEEEEecCC----eEEEEcCCCCEEEEEeCCC------------CCcccCCEEEEEEEEC
Confidence 35789999999999999864 2333334456999998743 1466788999999985
|
RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer. |
| >COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.43 E-value=0.52 Score=49.04 Aligned_cols=115 Identities=20% Similarity=0.286 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CCCc----ceeEe-ccCCCceeec--cChHHHHhh--hccCCCc
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS----AVFRL-DYKGQSACLA--QSPQLHKQM--SICGDFG 315 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---egga----~~F~v-~~~~~~~~L~--~Spql~lq~--~i~~g~~ 315 (435)
.+....|.+.++..|...||..|+||+|....+ +.|. ..|++ +-.|..++|| ..+++-..- .+.+.-.
T Consensus 17 ~~~~~~i~~~l~~~f~~~Gy~~v~tP~lE~~d~~l~~~g~~l~~~~f~l~d~~g~~l~LRpD~T~pVaR~~~~~~~~~P~ 96 (390)
T COG3705 17 ARRKEEIRDQLLALFRAWGYERVETPTLEPADPLLDGAGEDLRRRLFKLEDETGGRLGLRPDFTIPVARIHATLLAGTPL 96 (390)
T ss_pred HhhHHHHHHHHHHHHHHhCCccccccccchhhhhhhccchhhhhhheEEecCCCCeEEecccccHHHHHHHHHhcCCCCc
Confidence 345567888889999999999999999986652 2122 26876 4467778888 334433321 1233568
Q ss_pred eeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHH
Q 013865 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFV 363 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~ 363 (435)
|++..|+|||+... -+.-..||+|.-+|+=+.+.. -+++.++-.+++
T Consensus 97 Rl~Y~G~Vfr~~~~-~~g~~~Ef~QaGiEllG~~~~~ADaEvi~la~~~L~ 146 (390)
T COG3705 97 RLSYAGKVFRAREG-RHGRRAEFLQAGIELLGDDSAAADAEVIALALAALK 146 (390)
T ss_pred eeeecchhhhcchh-ccCcccchhhhhhHHhCCCcchhhHHHHHHHHHHHH
Confidence 99999999998732 333345999998887553211 244444444443
|
|
| >TIGR00617 rpa1 replication factor-a protein 1 (rpa1) | Back alignment and domain information |
|---|
Probab=91.34 E-value=1.9 Score=47.59 Aligned_cols=98 Identities=13% Similarity=0.183 Sum_probs=70.0
Q ss_pred cceEEeccccCCCCCCEEEEEEEEee---eec------CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCC
Q 013865 90 REWTVVGALNGSLKDQEVLIRGRVHT---TRP------VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNE 160 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~---~R~------~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~e 160 (435)
..++.|.+|.+-. ...+|+|||.+ +|. .| ++.-++|.|.++.|++.+... ..-+|...|..|
T Consensus 178 ~~~~pI~~L~py~--~~wtIkaRV~~Ks~ir~~~~~~geg-kvfsv~L~Degg~Irat~f~~------~~dkf~~~l~eG 248 (608)
T TIGR00617 178 RRVMPIASLSPYQ--NKWTIKARVTNKSEIRTWSNARGEG-KLFNVELLDESGEIRATAFNE------QADKFYDIIQEG 248 (608)
T ss_pred cceEEHHHCCCCC--CceEEEEEEEeccccceecCCCCCc-eeeEEEEecCCCeEEEEECch------HHHHHhhhcccC
Confidence 3578999998743 34999999975 332 35 778889999999999999742 234677889999
Q ss_pred cEEEEEE-EEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 161 SIVDVIG-VVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 161 siV~V~G-~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
++..|.+ .|+...+.-......+||....-..+.+|
T Consensus 249 ~VY~Is~~~Vk~an~~y~~~~~~yei~f~~~T~I~~~ 285 (608)
T TIGR00617 249 KVYYISKGSLKPANKQFTNLGNDYEMTLDRDTVIEEC 285 (608)
T ss_pred CEEEECceEEEEccccccCCCCCEEEEECCCeEEEEC
Confidence 9999965 45433222222335699999887777766
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10917 ATP-dependent DNA helicase RecG; Provisional | Back alignment and domain information |
|---|
Probab=90.93 E-value=1.2 Score=49.79 Aligned_cols=67 Identities=16% Similarity=0.138 Sum_probs=50.8
Q ss_pred ccCCCCCCEEEEEEEEeeeecC--CCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHH-HhcCCCCcEEEEEEEEec
Q 013865 98 LNGSLKDQEVLIRGRVHTTRPV--GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRF-VRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 98 l~~~~~g~~V~v~GrV~~~R~~--G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~-~~~l~~esiV~V~G~v~~ 171 (435)
+.+...|+.|+|.|.|.+.+.. |+++.-+.+.|+++.++++..... . .| .+.++.|+.+.|.|++..
T Consensus 53 i~~l~~g~~vtv~g~V~~~~~~~~~~~~~~v~l~D~tg~i~l~~F~~n---~----~~~~~~l~~G~~~~v~Gkv~~ 122 (681)
T PRK10917 53 IAELRPGEKVTVEGEVLSAEVVFGKRRRLTVTVSDGTGNLTLRFFNFN---Q----PYLKKQLKVGKRVAVYGKVKR 122 (681)
T ss_pred HHHCCCCCEEEEEEEEEEEEEccCCceEEEEEEEECCeEEEEEEEccC---c----HHHHhhCCCCCEEEEEEEEEe
Confidence 4444569999999999886433 446677888999999999988310 1 24 367999999999999975
|
|
| >KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=90.82 E-value=0.8 Score=47.87 Aligned_cols=101 Identities=14% Similarity=0.196 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC------CCCCcceeEecc-CCC----ceeeccChHHHHhhhccCCC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGGSAVFRLDY-KGQ----SACLAQSPQLHKQMSICGDF 314 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~------~egga~~F~v~~-~~~----~~~L~~Spql~lq~~i~~g~ 314 (435)
.=+.+|..|.+.|.+-|..+|...|.||++---. .|..--.+-+.. -|. .+=|+++=-=|+-|==+..+
T Consensus 72 ~qm~lRe~if~~i~~vFkrhGa~~iDTPVFElkeiL~gKYGEdskLiYdlkDQGGEl~SLRYDLTVPfARylAmNki~si 151 (518)
T KOG1936|consen 72 EQMALREKIFSTIKEVFKRHGAETIDTPVFELKEILTGKYGEDSKLIYDLKDQGGELCSLRYDLTVPFARYLAMNKITSI 151 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeeccccchhHHHHHhhhcccccceeEehhhcCCcEEEeecccccHHHHHHHHcccccc
Confidence 4567899999999999999999999999863211 111101222211 122 23344544445443212223
Q ss_pred ceeEEEecceecCC-CCCCccccccccceeeeec
Q 013865 315 GRVFETGPVFRAED-SYTHRHLCEFTGLDVEMEI 347 (435)
Q Consensus 315 ~rVfeIgp~FR~E~-s~t~rHl~EFt~lE~e~a~ 347 (435)
+-|.|+++||-.. ..|.--.-||.||||-+|.
T Consensus 152 -kRy~iAkVyRRd~P~mtrGR~REFYQcDFDIAG 184 (518)
T KOG1936|consen 152 -KRYHIAKVYRRDQPAMTRGRYREFYQCDFDIAG 184 (518)
T ss_pred -eeeeEEEEEeccCchhhchhhhhhhccCccccc
Confidence 5599999999875 3455567899999999887
|
|
| >PF08661 Rep_fac-A_3: Replication factor A protein 3; InterPro: IPR013970 Replication factor A is involved in eukaryotic DNA replication, recombination and repair | Back alignment and domain information |
|---|
Probab=89.78 E-value=1.9 Score=36.57 Aligned_cols=57 Identities=21% Similarity=0.242 Sum_probs=37.7
Q ss_pred CCCCCEEEEEEEEeeeecCCCceEEEEEE-eCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVR-ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lr-d~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
.+.|+.|+|-|+|.+....| + . +.++ .+++.|+|.+... ..+..+.+|.|.|+|...
T Consensus 15 ~~~gk~VrivGkv~~~~~~g-~-~-~~l~~~d~~~V~v~l~~~------------~~~~~~~~vEviG~V~~~ 72 (109)
T PF08661_consen 15 QFVGKTVRIVGKVESVDPDG-G-S-ATLSTSDGGQVTVSLNPP------------SDEELSKYVEVIGKVNDD 72 (109)
T ss_dssp GGTTSEEEEEEEEEEE-TTS-S-E-EEEE-TTS-EEEEEESS--------------SS---SEEEEEEEE-TT
T ss_pred hhCCCeEEEEEEEeeEcCCC-C-E-EEEEcCCCCEEEEEeCCC------------CCCCCCCEEEEEEEEcCC
Confidence 57899999999999999777 3 3 3455 3566888877632 134568899999999653
|
; PDB: 2PI2_H 1L1O_D 3KDF_A 2Z6K_D 1QUQ_D 2PQA_D. |
| >cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG | Back alignment and domain information |
|---|
Probab=89.65 E-value=4.4 Score=30.58 Aligned_cols=56 Identities=18% Similarity=0.168 Sum_probs=39.2
Q ss_pred EEEEEeeeec--C-CCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 109 IRGRVHTTRP--V-GNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 109 v~GrV~~~R~--~-G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
|.|+|.+.+. . |++..-+.+.|+++.|.++.... .. .....++.|+.+.|.|.+..
T Consensus 2 i~~~V~~~~~~~~~~~~~~~~~~~D~~g~i~~~~F~~----~~---~~~~~~~~G~~~~v~Gkv~~ 60 (75)
T cd04488 2 VEGTVVSVEVVPRRGRRRLKVTLSDGTGTLTLVFFNF----QP---YLKKQLPPGTRVRVSGKVKR 60 (75)
T ss_pred EEEEEEEEEeccCCCccEEEEEEEcCCCEEEEEEECC----CH---HHHhcCCCCCEEEEEEEEee
Confidence 5666655432 1 34566778899999999998742 11 11357999999999999965
|
RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha |
| >COG4085 Predicted RNA-binding protein, contains TRAM domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.59 E-value=1.7 Score=40.70 Aligned_cols=67 Identities=21% Similarity=0.385 Sum_probs=51.4
Q ss_pred CCCCCEEEEEEEEeeee-cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHH---HhcCCCCcEEEEEEEEec
Q 013865 101 SLKDQEVLIRGRVHTTR-PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRF---VRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R-~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~---~~~l~~esiV~V~G~v~~ 171 (435)
-...+.|+|.|-|.+.+ ..|..+.|+.|.|++++|-+++..+. .+.... ..-+..|.+|.|+|.+..
T Consensus 48 G~l~e~v~vkg~V~~~~n~~~~gi~~l~lndgtGti~vva~~~t----ee~l~~n~~~p~~~eGe~veVtGrv~~ 118 (204)
T COG4085 48 GRLNEEVTVKGEVTADQNAIGGGIESLVLNDGTGTITVVASRST----EETLELNEGMPVTVEGEIVEVTGRVEE 118 (204)
T ss_pred ceeeccceeeeEEEeeecccccceEEEEEECCCCcEEEEEecCh----hHhHhhcCCCCccccCcEEEEEEEEEE
Confidence 35567889999999998 55668899999999999999998653 232221 113669999999998864
|
|
| >PRK07459 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=89.43 E-value=9.4 Score=33.17 Aligned_cols=85 Identities=12% Similarity=0.139 Sum_probs=50.8
Q ss_pred EEEEEEEEee---eec--CCCceEEEEEE-------eCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCC
Q 013865 106 EVLIRGRVHT---TRP--VGNKLAFVVVR-------ERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (435)
Q Consensus 106 ~V~v~GrV~~---~R~--~G~kl~Fl~Lr-------d~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~ 173 (435)
.|.|.|||-+ +|. .|..++-+.|- +.+.-+.|++-.+ ......+.|.+|+.|.|+|.+....
T Consensus 5 ~v~LiGrL~~DPelr~t~~G~~v~~fslAv~~~~~~~~t~w~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~l~~~~ 78 (121)
T PRK07459 5 SVTLVGRAGRDPEVRYFESGSVVCNLTLAVNRRSRDDEPDWFNLEIWGK------TAQVAADYVKKGSLIGITGSLKFDR 78 (121)
T ss_pred EEEEEEEccCCCEEEEcCCCCEEEEEEEEecccccCCCceEEEEEEehH------HHHHHHHHcCCCCEEEEEEEEEecc
Confidence 4666666665 332 33333333332 2244577777632 1122456799999999999997543
Q ss_pred cc-cC-CCc-eeEEEEEeEEEEeecC
Q 013865 174 VE-IK-GAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 174 ~~-~~-~~t-~~lEi~v~~i~vls~~ 196 (435)
-. .. |.+ ..+||.+.+|.+|++.
T Consensus 79 ~~d~d~G~~r~~~ei~a~~i~~L~~k 104 (121)
T PRK07459 79 WTDRNTGEDRSKPVIRVDRLELLGSK 104 (121)
T ss_pred eEcCCCCeEEEEEEEEEeEEEECcCC
Confidence 22 22 333 3499999999999754
|
|
| >PRK15491 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=88.60 E-value=3 Score=43.34 Aligned_cols=90 Identities=16% Similarity=0.206 Sum_probs=63.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee-------ecCC--CceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCc
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTT-------RPVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNES 161 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~es 161 (435)
..+|++|.+. ...|+|.|||.++ |..| .+++=+.|-|.+++|.+++-... . -.+. ..|..|+
T Consensus 57 ~~kI~dL~~~--~~~v~i~arVl~~~~~R~f~r~dGs~g~v~~~~v~DeTG~ir~tlW~~~--a----~~~~~~~le~G~ 128 (374)
T PRK15491 57 TTKIADINES--SSNVNFTAKVVSIFEPKEFNRNDGTTGRVGNIIVADETGSIRLTLWDDL--A----DLIKTGDIEVGK 128 (374)
T ss_pred cccHHHCCCC--CCceEEEEEEeeccCCeeeecCCCCceEEEEEEEEcCCCeEEEEEECch--h----hhhccCCcCCCC
Confidence 3567777643 3679999999986 3334 26666789999999999997431 1 1122 3599999
Q ss_pred EEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
++.|.|.+.. +- +.+||.+.+-..+.+|
T Consensus 129 v~~I~~~~~~------~y-~g~Ei~i~~~~~i~~~ 156 (374)
T PRK15491 129 SLNISGYAKE------GY-SGIEVNIGRYGGISES 156 (374)
T ss_pred EEEEeeeecc------Cc-ccEEEEeCCCceeeec
Confidence 9999997432 11 2389999988888887
|
|
| >TIGR00237 xseA exodeoxyribonuclease VII, large subunit | Back alignment and domain information |
|---|
Probab=88.57 E-value=2 Score=45.49 Aligned_cols=76 Identities=14% Similarity=0.178 Sum_probs=57.5
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEE
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEV 185 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi 185 (435)
.|||.|=|.+.+...++=+|+.|.|....|-||+..+... ..+ -.+..|+-|.|.|.|..-+ ..|.+.|
T Consensus 19 ~v~V~GEisn~~~~~sGH~YFtLkD~~a~i~~vmf~~~~~----~l~--f~~~~G~~V~v~g~v~~y~-----~~G~~ql 87 (432)
T TIGR00237 19 QVWIQGEISNFTQPVSGHWYFTLKDENAQVRCVMFRGNNN----RLK--FRPQNGQQVLVRGGISVYE-----PRGDYQI 87 (432)
T ss_pred cEEEEEEecCCeeCCCceEEEEEEcCCcEEEEEEEcChhh----CCC--CCCCCCCEEEEEEEEEEEC-----CCCcEEE
Confidence 8999999999876433458899999999999999875321 011 2478999999999986421 1367999
Q ss_pred EEeEEEE
Q 013865 186 QIKKLYC 192 (435)
Q Consensus 186 ~v~~i~v 192 (435)
.|.+|.-
T Consensus 88 ~v~~i~~ 94 (432)
T TIGR00237 88 ICFEMQP 94 (432)
T ss_pred EEEEecc
Confidence 9999874
|
This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits. |
| >KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=88.36 E-value=0.91 Score=47.47 Aligned_cols=117 Identities=11% Similarity=0.159 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--------CCCcceeEeccCCCceeeccChHHHHhh-----hcc
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGSAVFRLDYKGQSACLAQSPQLHKQM-----SIC 311 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--------egga~~F~v~~~~~~~~L~~Spql~lq~-----~i~ 311 (435)
.....+..+++++.-+|+..+||+-+.||-|..... .+.-+.+.+---+.+.||.-..|.-+-. .+.
T Consensus 182 g~~a~LeqALi~yal~~l~~kGy~pl~~P~i~rkeVm~~cg~~~~~d~~~~y~ld~~~~~~LiaTaE~plAa~~~~e~~~ 261 (455)
T KOG2509|consen 182 GAGAFLEQALINYALDFLNAKGYTPLTTPDILRKEVMQKCGQLPRFDEEQYYVLDGGDEKYLIATAEQPLAAYHRDEWLE 261 (455)
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCccccCchhhhHHHHHHhccCcCCCcceEEeecCCccceeEeeccchhhhhhcccccc
Confidence 366777889999999999999999999999875431 1111112111112334554333322211 111
Q ss_pred C-CC-ceeEEEecceecCCCCC---Cc---cccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 312 G-DF-GRVFETGPVFRAEDSYT---HR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 312 ~-g~-~rVfeIgp~FR~E~s~t---~r---Hl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
- .+ -|+--.+.|||+|-+.. .+ -.-+|+-+|.-. +. +-++--.+.|+|+.
T Consensus 262 ~~~lPiK~vg~S~CfR~EaGs~G~d~~GlyRVHqF~KVE~Fv-it-~Pe~S~~~~eEmi~ 319 (455)
T KOG2509|consen 262 EDQLPIKYVGVSRCFRAEAGSHGKDTKGLYRVHQFEKVEQFV-IT-GPEDSWEMLEEMIN 319 (455)
T ss_pred cccCceeeeehhHHHHHHhhhcccccccceeeeeeeeeEEEE-ec-CcchhHHHHHHHHH
Confidence 0 11 14556799999995222 22 123899998732 22 23444444444443
|
|
| >cd04484 polC_OBF polC_OBF: A subfamily of OB folds corresponding to the N-terminal OB-fold nucleic acid binding domain of Bacillus subtilis type C replicative DNA polymerase III alpha subunit (polC) | Back alignment and domain information |
|---|
Probab=88.19 E-value=12 Score=30.12 Aligned_cols=74 Identities=18% Similarity=0.253 Sum_probs=51.5
Q ss_pred EEEEEEEeeee----cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCC-CCcEEEEEEEEecCCcccCCCce
Q 013865 107 VLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLS-NESIVDVIGVVSVPDVEIKGATQ 181 (435)
Q Consensus 107 V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~-~esiV~V~G~v~~~~~~~~~~t~ 181 (435)
|.|.|-|-.+- ..|+.+.-+.|.|.+.+|-|..... . . .+....|. .|+.|.|.|.+....- .+
T Consensus 2 v~i~G~Vf~~e~re~k~g~~i~~~~itD~t~Si~~K~F~~-~--~---~~~~~~ik~~G~~v~v~G~v~~D~f-----~~ 70 (82)
T cd04484 2 VVVEGEVFDLEIRELKSGRKILTFKVTDYTSSITVKKFLR-K--D---EKDKEELKSKGDWVRVRGKVQYDTF-----SK 70 (82)
T ss_pred EEEEEEEEEEEEEEecCCCEEEEEEEEcCCCCEEEEEecc-C--C---hhHHhhcccCCCEEEEEEEEEEccC-----CC
Confidence 77889987652 3565666688999998888887753 1 1 12236788 9999999999975421 24
Q ss_pred eEEEEEeEEE
Q 013865 182 QVEVQIKKLY 191 (435)
Q Consensus 182 ~lEi~v~~i~ 191 (435)
++.+.+..|.
T Consensus 71 e~~~~i~~i~ 80 (82)
T cd04484 71 ELVLMINDIE 80 (82)
T ss_pred ceEEEeeeEE
Confidence 6777776654
|
Replication in B. subtilis and Staphylococcus aureus requires two different polymerases, polC and DnaE. The holoenzyme is thought to include the two different polymerases. At the B. subtilis replication fork, polC appears to be involved in leading strand synthesis and DnaE in lagging strand synthesis. |
| >PRK06863 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=87.99 E-value=13 Score=34.43 Aligned_cols=57 Identities=16% Similarity=0.026 Sum_probs=39.2
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
-+.|++.. +....+...|++||.|.|+|.+....- ...|.+ ..++|.+.+|.+|+..
T Consensus 53 w~~Vv~fg------k~AE~v~~~LkKGs~V~VeGrL~~r~w~DkdG~~r~~~eI~a~~i~~L~~r 111 (168)
T PRK06863 53 WHRIVFYR------RQAEVAGEYLRKGSQVYVEGRLKTRKWQDQNGQDRYTTEIQGDVLQMLGGR 111 (168)
T ss_pred EEEEEEEh------HHHHHHHHHCCCCCEEEEEEEEEeCCccCCCCCEEEEEEEEEeEEEECCCC
Confidence 46676653 222345678999999999999975422 123444 3599999999998754
|
|
| >PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed | Back alignment and domain information |
|---|
Probab=87.70 E-value=2.6 Score=44.49 Aligned_cols=77 Identities=13% Similarity=0.204 Sum_probs=59.2
Q ss_pred CCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec-CCcccCCCcee
Q 013865 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV-PDVEIKGATQQ 182 (435)
Q Consensus 104 g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~-~~~~~~~~t~~ 182 (435)
-..|||.|=|.+.+.++++=+|+.|.|....|-||+..+... +..-.+..|.-|.|.|.|.. ++ .|.
T Consensus 23 ~~~v~v~gEis~~~~~~sGH~Yf~Lkd~~a~i~~~~~~~~~~------~~~~~~~~G~~v~v~g~~~~y~~------~g~ 90 (438)
T PRK00286 23 LGQVWVRGEISNFTRHSSGHWYFTLKDEIAQIRCVMFKGSAR------RLKFKPEEGMKVLVRGKVSLYEP------RGD 90 (438)
T ss_pred CCcEEEEEEeCCCeeCCCCeEEEEEEcCCcEEEEEEEcChhh------cCCCCCCCCCEEEEEEEEEEECC------CCC
Confidence 468999999999876533458999999999999999875321 01124789999999999974 32 256
Q ss_pred EEEEEeEEEE
Q 013865 183 VEVQIKKLYC 192 (435)
Q Consensus 183 lEi~v~~i~v 192 (435)
+.|.|.+|..
T Consensus 91 ~ql~v~~i~~ 100 (438)
T PRK00286 91 YQLIVEEIEP 100 (438)
T ss_pred EEEEEEEeee
Confidence 9999999875
|
|
| >PF12869 tRNA_anti-like: tRNA_anti-like; InterPro: IPR024422 The function of the proteins in this entry is not known, but they contain a novel variant of the nucleic acid-binding OB fold [] | Back alignment and domain information |
|---|
Probab=87.58 E-value=2 Score=37.85 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=37.3
Q ss_pred CCCCCEEEEEEEEeeeecCCCceEEEEEEeC--CeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEe
Q 013865 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRER--VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVS 170 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~--~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~ 170 (435)
...|+.|.|.|.|..++....+-.++...+. ...++|.+..+.. .......|..|+.|.|+|++.
T Consensus 64 kY~gK~i~vtG~V~~I~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~l~~G~~Vti~G~~~ 130 (144)
T PF12869_consen 64 KYKGKIIEVTGTVSSIDKGFGDNYVVLLGTENGFAGVQCYFSNDQE-----KRASVAKLKKGQKVTIKGICT 130 (144)
T ss_dssp HHTT-EEEEEEEEEEEEE-STT-EEEEEE-TT-S-S--EEEEEEGG-----GHHHHHH--TTSEEEEEEE--
T ss_pred hcCCCEEEEEEEEEEEEEcCCCcEEEEccCCCCceeEEEEEccchh-----hhhhHhcCCCCCEEEEEEEEE
Confidence 4679999999999999873324345555553 3468888875421 111234599999999999875
|
; PDB: 3F1Z_I. |
| >PF00436 SSB: Single-strand binding protein family; InterPro: IPR000424 The Escherichia coli single-strand binding protein [] (gene ssb), also known as the helix-destabilising protein, is a protein of 177 amino acids | Back alignment and domain information |
|---|
Probab=87.20 E-value=13 Score=30.35 Aligned_cols=54 Identities=19% Similarity=0.117 Sum_probs=32.3
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCccc-CCCc-eeEEEEEeEEEEe
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEI-KGAT-QQVEVQIKKLYCV 193 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~-~~~t-~~lEi~v~~i~vl 193 (435)
-++|++-.. ..-.....+.+||.|.|.|.+....-.. .|.+ ..++|.+++|.+|
T Consensus 49 ~~~v~~~g~------~A~~~~~~l~kG~~V~V~G~l~~~~~~~~~G~~~~~~~i~a~~i~fl 104 (104)
T PF00436_consen 49 WINVVAWGK------LAENVAEYLKKGDRVYVEGRLRTRTYEDKDGQKRYRVEIIADNIEFL 104 (104)
T ss_dssp EEEEEEEHH------HHHHHHHH--TT-EEEEEEEEEEEEEESTTSSEEEEEEEEEEEEEE-
T ss_pred EEEEEeeee------cccccceEEcCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEeC
Confidence 577777632 1223446699999999999987432222 2433 4599999999875
|
It binds tightly, as a homotetramer, to single-stranded DNA (ss-DNA) and plays an important role in DNA replication, recombination and repair. Closely related variants of SSB are encoded in the genome of a variety of large self-transmissible plasmids. SSB has also been characterised in bacteria such as Proteus mirabilis or Serratia marcescens. Eukaryotic mitochondrial proteins that bind ss-DNA and are probably involved in mitochondrial DNA replication are structurally and evolutionary related to prokaryotic SSB.; GO: 0003697 single-stranded DNA binding; PDB: 3UDG_B 1SE8_A 2CWA_A 3ULL_B 1S3O_A 2DUD_A 3AFP_A 3AFQ_A 3VDY_A 3EIV_C .... |
| >PRK08486 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=86.70 E-value=13 Score=34.66 Aligned_cols=44 Identities=14% Similarity=0.152 Sum_probs=32.6
Q ss_pred HHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 153 FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
+...|++|+.|.|+|.+....- ...+.+ -.+||.+.+|.+|++.
T Consensus 63 ~~~~l~KG~~V~VeGrL~~~~y~dkdG~~r~~~eI~a~~v~~L~~~ 108 (182)
T PRK08486 63 ANQYLSKGSKVLIEGRLTFESWMDQNGQKRSKHTITAESMQMLDSK 108 (182)
T ss_pred HHHHcCCCCEEEEEEEEEeCcEECCCCcEEEEEEEEEeEEEECCCC
Confidence 4567999999999999974321 223444 3499999999999765
|
|
| >PRK07275 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=85.93 E-value=16 Score=33.55 Aligned_cols=85 Identities=13% Similarity=0.223 Sum_probs=52.8
Q ss_pred EEEEEEEEee---eec--CCCceEEEEEE------e-----CCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEE
Q 013865 106 EVLIRGRVHT---TRP--VGNKLAFVVVR------E-----RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVV 169 (435)
Q Consensus 106 ~V~v~GrV~~---~R~--~G~kl~Fl~Lr------d-----~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v 169 (435)
.|.|.|||.. +|- .|..++-+.|- + ...-|.|++-.+ .....++.|.+|+.|.|+|.+
T Consensus 4 ~v~LiGrL~~DPElr~t~sG~~v~~ftlAv~r~~~~~~ge~~tdfi~vv~wgk------~Ae~~~~~l~KG~~V~VeGrl 77 (162)
T PRK07275 4 NVVLVGRMTRDAELRYTPSNVAVATFTLAVNRTFKSQNGEREADFINCVIWRQ------QAENLANWAKKGALIGVTGRI 77 (162)
T ss_pred EEEEEEEECCCCeEEECCCCCEEEEEEEEEcCceecCCCCEeeeEEEEEEEcH------HHHHHHHHcCCCCEEEEEEEE
Confidence 4667777764 343 45444444442 1 124577777632 222345779999999999999
Q ss_pred ecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 170 SVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 170 ~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
....- ...|.+ ..+||.+.+|.+|.+.
T Consensus 78 ~~r~y~dkdG~k~~~~evva~~i~~l~~~ 106 (162)
T PRK07275 78 QTRNYENQQGQRVYVTEVVADNFQMLESR 106 (162)
T ss_pred EeceEECCCCCEEEEEEEEEeEEEECCCC
Confidence 74321 123444 3499999999998754
|
|
| >PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6 | Back alignment and domain information |
|---|
Probab=85.42 E-value=16 Score=35.56 Aligned_cols=118 Identities=14% Similarity=0.234 Sum_probs=68.2
Q ss_pred HHHHHHHHHhh-----cCCeEEeeCceeeccCCC-----CCcc---eeEeccC-CCceeeccChHHHHhhhcc-CCC---
Q 013865 253 QVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GGSA---VFRLDYK-GQSACLAQSPQLHKQMSIC-GDF--- 314 (435)
Q Consensus 253 ~i~~~~r~fl~-----~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~-~~~~~L~~Spql~lq~~i~-~g~--- 314 (435)
..+..+.++|. ..+.+.|..|.+....++ .|.+ .|.+.-+ +..+-.-+|---||.+++. -||
T Consensus 8 ~aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpVsF~~k~~~~~~~EIVhSLAKWKR~aL~~y~f~~g 87 (244)
T PF03590_consen 8 KAIKFIKDTFERELSKALNLTRVSAPLFVEKGSGLNDNLNGVERPVSFDIKDIPDETAEIVHSLAKWKRMALKRYGFPPG 87 (244)
T ss_dssp HHHHHHHHHHHHHHHHHC-EEE----SEEETTSS-S--TTST----EE--TTSTT--EEE-S--TTHHHHHHHHTT--TT
T ss_pred HHHHHHHHHHHHHHHHHhCceEecCCeEEecCCCCcCCCCCeEeeEEEEccCCCCceeeeehhHHHHHHHHHHHcCCCCC
Confidence 34555555554 469999999999865331 1333 3666555 6788888999999998874 244
Q ss_pred ceeEEEeccee-cCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhh
Q 013865 315 GRVFETGPVFR-AEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNN 371 (435)
Q Consensus 315 ~rVfeIgp~FR-~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~ 371 (435)
+.+|+=..+.| .|..-+..|.-=.-|-|||+.+.. -+--++.+.+.+..|+..+..
T Consensus 88 eGlyTdMnAiR~~de~ld~~HSiYVDQWDWEkvI~~-~~Rnl~~Lk~tV~~Iy~aik~ 144 (244)
T PF03590_consen 88 EGLYTDMNAIRPDDEELDNIHSIYVDQWDWEKVISK-EDRNLEFLKETVRKIYKAIKE 144 (244)
T ss_dssp -EEEEEEEEE-TT-SS--SS--SEEEEEEEEEE--T-T--SHHHHHHHHHHHHHHHHH
T ss_pred ceEeecCceeecchhccCcceEEEecccCHhhhcCc-ccccHHHHHHHHHHHHHHHHH
Confidence 68999999999 887568899999999999999875 356677778888888777653
|
3.1.1 from EC catalyses the conversion of L-aspartate to L-asparagine in the presence of ATP and ammonia. This family represents one of two non-homologous forms of aspartate--ammonia ligase found in Escherichia coli. This type is also found in Haemophilus influenzae, Treponema pallidum and Lactobacillus delbrueckii, but appears to have a very limited distribution. The fact that the protein from the H. influenzae is more than 70% identical to that from the spirochete T. pallidum, but less than 65% identical to that from the closely related E. coli, strongly suggests lateral transfer.; GO: 0004071 aspartate-ammonia ligase activity, 0006529 asparagine biosynthetic process, 0005737 cytoplasm; PDB: 11AS_B 12AS_A. |
| >PRK06461 single-stranded DNA-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=84.92 E-value=13 Score=32.57 Aligned_cols=85 Identities=16% Similarity=0.171 Sum_probs=57.0
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeee------cCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEE
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTR------PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R------~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV 163 (435)
..+|++|.+. ...|.+.|.|.++- ..|. .+.-+.|.|.+++|.+.+=.. . +..|..|++|
T Consensus 4 ~~kI~dL~~g--~~~v~~~~~V~~i~~~~~~~~k~~~~~v~~~~l~D~TG~I~~tlW~~-~---------a~~l~~GdvV 71 (129)
T PRK06461 4 ITKIKDLKPG--MERVNVTVRVLEVGEPKVIQTKGGPRTISEAVVGDETGRVKLTLWGE-Q---------AGSLKEGEVV 71 (129)
T ss_pred ceEHHHcCCC--CCceEEEEEEEEcCCceEEEeCCCceEEEEEEEECCCCEEEEEEeCC-c---------cccCCCCCEE
Confidence 4567777542 26789999998532 1232 366678889999999888532 1 2468899999
Q ss_pred EEE-EEEecCCcccCCCceeEEEEEeE---EEEeec
Q 013865 164 DVI-GVVSVPDVEIKGATQQVEVQIKK---LYCVSR 195 (435)
Q Consensus 164 ~V~-G~v~~~~~~~~~~t~~lEi~v~~---i~vls~ 195 (435)
.|. |.+..- .+.++|.+.+ |..+..
T Consensus 72 ~I~na~v~~f-------~G~lqL~i~~~~~i~~~~~ 100 (129)
T PRK06461 72 EIENAWTTLY-------RGKVQLNVGKYGSISESDD 100 (129)
T ss_pred EEECcEEeee-------CCEEEEEECCCEEEEECCc
Confidence 999 454421 2468899984 665554
|
|
| >PRK06751 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=84.86 E-value=19 Score=33.37 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=39.2
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEeEEEEeecC
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~~i~vls~~ 196 (435)
-+-|++-.. ....+...|++|+.|.|+|.+....-. ..+.+ ..+||.+..|.+|.+.
T Consensus 48 wi~~v~wgk------~Ae~~~~~l~KG~~V~VeGrL~~r~yedkdG~~~~~~eVva~~i~~l~~r 106 (173)
T PRK06751 48 FINCVIWRK------QAENVANYLKKGSLAGVDGRLQTRNYEGQDGKRVYVTEVLAESVQFLEPR 106 (173)
T ss_pred EEEEEEeCc------HHHHHHHHcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEeCcCC
Confidence 466776532 233456779999999999999754321 23444 3499999999998754
|
|
| >TIGR00643 recG ATP-dependent DNA helicase RecG | Back alignment and domain information |
|---|
Probab=84.53 E-value=4.8 Score=44.64 Aligned_cols=66 Identities=17% Similarity=0.164 Sum_probs=48.6
Q ss_pred cccCCCCCCEEEEEEEEeeeec---CCCceEEEEEEe-CCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEEEEEec
Q 013865 97 ALNGSLKDQEVLIRGRVHTTRP---VGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSV 171 (435)
Q Consensus 97 ~l~~~~~g~~V~v~GrV~~~R~---~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~G~v~~ 171 (435)
.+.+-..|+.++|.|+|.+... .+.++.-+.+.| +++.+.++.... .|. +.++.|+.+.|.|++..
T Consensus 25 ~i~~~~~g~~~~~~~~v~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~F~~---------~~~~~~~~~g~~~~~~Gk~~~ 95 (630)
T TIGR00643 25 TIGELLPGERATIVGEVLSHCIFGFKRRKVLKLRLKDGGYKKLELRFFNR---------AFLKKKFKVGSKVVVYGKVKS 95 (630)
T ss_pred CHHHcCCCCEEEEEEEEEEeEeccCCCCceEEEEEEECCCCEEEEEEECC---------HHHHhhCCCCCEEEEEEEEEe
Confidence 3444466999999999875321 223456678899 999999998832 133 57999999999999974
|
|
| >PRK02801 primosomal replication protein N; Provisional | Back alignment and domain information |
|---|
Probab=83.95 E-value=24 Score=29.55 Aligned_cols=52 Identities=12% Similarity=0.238 Sum_probs=33.7
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEe
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vl 193 (435)
.|+|++-.+ ......+.+.+|+.|.|+|.+..- +...|.+ .+.|+++.|..+
T Consensus 49 ~i~~va~G~------~Ae~~~~~l~kGs~v~V~G~L~~~-~~~~g~~-~~~v~~~~i~~l 100 (101)
T PRK02801 49 RMPVIVSGN------QFQAITQSITVGSKITVQGFISCH-QGRNGLS-KLVLHAEQIELI 100 (101)
T ss_pred EEEEEEEcH------HHHHHHhhcCCCCEEEEEEEEEEe-ECCCCCE-EEEEEEEEEEEC
Confidence 388887632 222334579999999999999751 2222322 255998888765
|
|
| >PRK06293 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=83.81 E-value=29 Score=31.87 Aligned_cols=58 Identities=16% Similarity=0.129 Sum_probs=38.4
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.-+.|++-.+ ......+.|++|+.|.|+|.+....- .+.|.+ ..++|.+..|.+|+-.
T Consensus 43 ~wi~v~awg~------~Ae~v~~yL~KG~~V~VeGrL~~~~y~dkdG~kr~~~eIva~~I~fl~~~ 102 (161)
T PRK06293 43 VWCRCNIWGN------RYDKMLPYLKKGSGVIVAGEMSPESYVDKDGSPQSSLVVSVDTIKFSPFG 102 (161)
T ss_pred EEEEEEEEhH------HHHHHHHhCCCCCEEEEEEEEEeCccCCCCCCEEEEEEEEEeEEEECcCC
Confidence 3466666532 11234567999999999999974321 233444 3499999999998644
|
|
| >PRK07274 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=83.72 E-value=30 Score=30.39 Aligned_cols=44 Identities=18% Similarity=0.209 Sum_probs=32.8
Q ss_pred HHhcCCCCcEEEEEEEEecCCcccCCCc-eeEEEEEeEEEEeecC
Q 013865 153 FVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
..+.|.+||.|.|+|.+....-...|.+ ..+||.+.++.+|.+.
T Consensus 61 v~~~l~KG~~V~V~Grl~~~~y~kdG~~~~~~eviv~~i~~l~~k 105 (131)
T PRK07274 61 LASYASKGSLISIDGELRTRKYEKDGQTHYVTEVLCQSFQLLESR 105 (131)
T ss_pred HHHHcCCCCEEEEEEEEEeccCccCCcEEEEEEEEEEEEEECcCC
Confidence 4567999999999999975433333444 3489999999998643
|
|
| >PRK14699 replication factor A; Provisional | Back alignment and domain information |
|---|
Probab=83.18 E-value=8.2 Score=41.53 Aligned_cols=88 Identities=13% Similarity=0.190 Sum_probs=59.0
Q ss_pred EEeccccCCCCCCEEEEEEEEeee-------ecCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHh--cCCCCc
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTT-------RPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR--SLSNES 161 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~--~l~~es 161 (435)
.+|++|.+ .+..|+|.|||.++ |..|. +++=+.|-|.+++|-+++=... ...+. .|..||
T Consensus 58 ~kI~di~~--~~~~v~i~~rVl~i~~~r~f~r~dG~~g~v~~~~iaDeTG~ir~tlW~~~-------a~~~~~g~l~~GD 128 (484)
T PRK14699 58 VKIENITP--ESGPVNFIARVVSVFDTKEFTRNDGTIGRVGNLIVGDETGKIKLTLWDNM-------ADLIKAGKIKAGQ 128 (484)
T ss_pred ccHhHccC--CCceEEEEEEEEEecCceEEecCCCCceEEEEEEEecCCCeEEEEEecCc-------cchhhhcCCCCCC
Confidence 46777754 35789999999997 34443 5666688899999999985321 11222 599999
Q ss_pred EEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
+|.|.|.++. . - +.+||.+....++.++
T Consensus 129 vv~I~~~~r~-~-----~-~g~el~~~~~~~i~~~ 156 (484)
T PRK14699 129 TLQISGYAKQ-G-----Y-SGVEVNIGNNGVLTES 156 (484)
T ss_pred EEEEcceecc-C-----C-CCceEEeCCCceeecc
Confidence 9999996432 2 1 2367777665555554
|
|
| >COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription] | Back alignment and domain information |
|---|
Probab=82.82 E-value=13 Score=41.36 Aligned_cols=83 Identities=16% Similarity=0.112 Sum_probs=59.2
Q ss_pred cccCCCCCCEEEEEEEEeee--e-cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEEEEEecC
Q 013865 97 ALNGSLKDQEVLIRGRVHTT--R-PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 97 ~l~~~~~g~~V~v~GrV~~~--R-~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~G~v~~~ 172 (435)
.+.+...|..|+|.|.|.+. + ..++++.=+.+.|+++.|=+++.... . |+ +.++.|..|.|.|.+..-
T Consensus 53 ~i~~~~~g~~vti~g~V~~~~~~~~~~~~~l~v~~~d~~~~l~l~fFn~~----~----~l~~~~~~G~~v~v~Gk~~~~ 124 (677)
T COG1200 53 GIAEARPGEIVTIEGTVLSHEKFPFGKRKLLKVTLSDGTGVLTLVFFNFP----A----YLKKKLKVGERVIVYGKVKRF 124 (677)
T ss_pred ChhhcCCCceEEEEEEEEeeeccCCCCCceEEEEEecCcEEEEEEEECcc----H----HHHhhCCCCCEEEEEEEEeec
Confidence 34455679999999999664 4 33556566788899999999887432 1 33 579999999999999752
Q ss_pred CcccCCCceeEEEEEeEEEEee
Q 013865 173 DVEIKGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls 194 (435)
.+..++.--++.+++
T Consensus 125 -------~~~~~~~hpe~~~~~ 139 (677)
T COG1200 125 -------KGGLQITHPEYIVND 139 (677)
T ss_pred -------cCceEEEcceEEecC
Confidence 234666666666654
|
|
| >PRK06752 single-stranded DNA-binding protein; Validated | Back alignment and domain information |
|---|
Probab=82.42 E-value=30 Score=29.42 Aligned_cols=57 Identities=18% Similarity=0.281 Sum_probs=38.5
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
-+-|++-.. ....+...+.+||.|.|+|.+....- ...|.+ ..+||.+.+|.+|++.
T Consensus 48 ~~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~l~~~~~~~~~G~~~~~~ei~a~~i~~l~~~ 106 (112)
T PRK06752 48 FINCVVWRK------SAENVTEYCTKGSLVGITGRIHTRNYEDDQGKRIYITEVVIESITFLERR 106 (112)
T ss_pred EEEEEEehH------HHHHHHHhcCCCCEEEEEEEEEeCccCCCCCcEEEEEEEEEEEEEECCCC
Confidence 456666532 22234567999999999999975432 223444 3599999999998754
|
|
| >KOG3108 consensus Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=82.36 E-value=7.9 Score=38.36 Aligned_cols=75 Identities=15% Similarity=0.150 Sum_probs=53.3
Q ss_pred CEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEE
Q 013865 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lE 184 (435)
..|++-|||.++-.+..+ .+|+|-|+++.|=|..=......+. ....|..|..|.|.|.++.+. |..+
T Consensus 69 ~~v~~VGivr~~e~~~t~-i~y~I~D~tg~id~r~W~~~~~~~~----e~~~l~~~~yVkv~G~Lk~f~-------Gk~s 136 (265)
T KOG3108|consen 69 SAVSIVGIVRNIEKSATN-ITYEIEDGTGQIDVRQWFHDNAESE----EMPALETGTYVKVYGHLKPFQ-------GKKS 136 (265)
T ss_pred EEEEEEEEEEeceecCcc-eEEEEecCcccEEEEEeccccchhh----hCcccccCcEEEeeecccCCC-------Ccee
Confidence 368899999999988766 6789999999876665433222222 235899999999999997543 3345
Q ss_pred EEEeEEE
Q 013865 185 VQIKKLY 191 (435)
Q Consensus 185 i~v~~i~ 191 (435)
|.+.+|.
T Consensus 137 l~~fkI~ 143 (265)
T KOG3108|consen 137 LQVFKIR 143 (265)
T ss_pred EEEEeee
Confidence 5555543
|
|
| >COG5235 RFA2 Single-stranded DNA-binding replication protein A (RPA), medium (30 kD) subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=82.13 E-value=9.7 Score=36.32 Aligned_cols=61 Identities=13% Similarity=0.182 Sum_probs=47.0
Q ss_pred EEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 106 EVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 106 ~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.|.+-|||.++..+-.+ .|++|.||++.|-|-.=.... . ....++.+.-+-.|.|.|.++.
T Consensus 68 ~V~fVGvvrni~~~ttn-~~~~iEDGTG~Ievr~W~~~~---~-~~e~~~d~~~~~yvkV~G~lk~ 128 (258)
T COG5235 68 NVQFVGVVRNIKTSTTN-SMFVIEDGTGSIEVRFWPGNS---Y-EEEQCKDLEEQNYVKVNGSLKT 128 (258)
T ss_pred eEEEEEEEEeeeecccc-eEEEEecCCceEEEEecCCCc---h-HHHhccccccccEEEEecceee
Confidence 58899999999998755 789999999999988654322 1 1234566778889999998863
|
|
| >KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=81.93 E-value=4.1 Score=47.90 Aligned_cols=119 Identities=13% Similarity=0.073 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeecc-CCCC-CcceeEe-ccCCC----ceeeccChHHHHhhhccCCCceeE
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG-SSEG-GSAVFRL-DYKGQ----SACLAQSPQLHKQMSICGDFGRVF 318 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~-~~eg-ga~~F~v-~~~~~----~~~L~~Spql~lq~~i~~g~~rVf 318 (435)
..-.+|+.++..+-+-|..+|++|++||-+... +|-. ..++..+ +.-|. ++=||+---=|.-+=-+ -.-|-|
T Consensus 930 ~~~~l~~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs~N~~-~~~Kry 1008 (1351)
T KOG1035|consen 930 INNELREYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLDHSGDVVELPYDLRLPFARYVSRNSV-LSFKRY 1008 (1351)
T ss_pred hHHHHHHHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeecCCCCEEEeeccccchHHHHhhhchH-HHHHHh
Confidence 344567889999999999999999999976532 2221 1223222 22222 22233222222211001 123569
Q ss_pred EEecceecCCCCCCccccccccceeeeeccc-c--HHHHHHHHHHHHHHHHhh
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-H--YSEVMDIVDRLFVTIFDG 368 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~--~~d~m~~~e~li~~i~~~ 368 (435)
+|++|||-+.+ + |--||+.|+|-+-.-. + --|++.++-+++..++.+
T Consensus 1009 ~i~rVyr~~~~--~-hP~~~~ec~fDii~~t~sl~~AE~L~vi~Ei~~~~l~~ 1058 (1351)
T KOG1035|consen 1009 CISRVYRPAIH--N-HPKECLECDFDIIGPTTSLTEAELLKVIVEITTEILHE 1058 (1351)
T ss_pred hhheeeccccc--C-CCccccceeeeEecCCCCccHHHHHHHHHHHHHHHhcc
Confidence 99999998883 3 8889999999754321 1 246777787777776554
|
|
| >PRK13732 single-stranded DNA-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=81.93 E-value=32 Score=31.99 Aligned_cols=44 Identities=23% Similarity=0.209 Sum_probs=32.3
Q ss_pred HHhcCCCCcEEEEEEEEecCCcccCCCc-eeEEEEEe---EEEEeecC
Q 013865 153 FVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIK---KLYCVSRA 196 (435)
Q Consensus 153 ~~~~l~~esiV~V~G~v~~~~~~~~~~t-~~lEi~v~---~i~vls~~ 196 (435)
....|.+||.|.|+|.+....-...|.+ ..+||.+. +|.+|++.
T Consensus 68 v~~~L~KG~~V~VeGrL~~r~ye~dG~kr~~~eIiv~~~g~~~fL~~~ 115 (175)
T PRK13732 68 AGEYLRKGAQVYIEGQLRTRSWEDNGITRYVTEILVKTTGTMQMLGRA 115 (175)
T ss_pred HHHhcCCCCEEEEEEEEEeeeEccCCeEEEEEEEEEeecCeEEEecCC
Confidence 4567999999999999874322223444 34899998 89999765
|
|
| >PRK13480 3'-5' exoribonuclease YhaM; Provisional | Back alignment and domain information |
|---|
Probab=81.83 E-value=14 Score=37.47 Aligned_cols=79 Identities=10% Similarity=0.112 Sum_probs=54.7
Q ss_pred CCEEEEEEEEeeee----cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCC
Q 013865 104 DQEVLIRGRVHTTR----PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179 (435)
Q Consensus 104 g~~V~v~GrV~~~R----~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~ 179 (435)
|+.|..-.-|.++. +.|+.-..+.|.|.+++|.+.+=.. +. .....+..|++|.|.|.+..-
T Consensus 11 g~~v~~~~lv~~~~~~~~knG~~yl~l~l~D~tG~I~ak~W~~----~~---~~~~~~~~g~vv~v~G~v~~y------- 76 (314)
T PRK13480 11 GEQVDHFLLIKSATKGVASNGKPFLTLILQDKSGDIEAKLWDV----SP---EDEATYVPETIVHVKGDIINY------- 76 (314)
T ss_pred CCEeeEEEEEEEceeeecCCCCeEEEEEEEcCCcEEEEEeCCC----Ch---hhHhhcCCCCEEEEEEEEEEE-------
Confidence 56665555555543 3365555677889999999998532 11 234679999999999998642
Q ss_pred ceeEEEEEeEEEEeecC
Q 013865 180 TQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 180 t~~lEi~v~~i~vls~~ 196 (435)
.|.+.|.+..|..+.+.
T Consensus 77 ~g~~Ql~i~~i~~~~~~ 93 (314)
T PRK13480 77 RGRKQLKVNQIRLATEE 93 (314)
T ss_pred CCcceEEEEEeEECCCC
Confidence 14577889999888764
|
|
| >TIGR00621 ssb single stranded DNA-binding protein (ssb) | Back alignment and domain information |
|---|
Probab=81.70 E-value=35 Score=31.14 Aligned_cols=58 Identities=14% Similarity=0.059 Sum_probs=38.1
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEeEEEEeecC
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.-+-|++-. +....+...|.+|+.|.|+|.+....-. ..+.+ ..++|.+++|..|...
T Consensus 51 ~~~~v~~wg------~~Ae~~~~~l~KG~~V~V~G~L~~~~~~~kdG~~~~~~ev~a~~i~~L~~~ 110 (164)
T TIGR00621 51 EWHDIVIFG------RLAEVAAQYLKKGSLVYVEGRLRTRKWEDQNGQKRSKTEIIADNVQLLDLL 110 (164)
T ss_pred eEEEEEEeh------HHHHHHHHhCCCCCEEEEEEEEEeceEECCCCcEEEEEEEEEEEEeecccc
Confidence 356666542 2222355689999999999999753221 13444 3499999999887653
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK12366 replication factor A; Reviewed | Back alignment and domain information |
|---|
Probab=81.62 E-value=7.8 Score=43.13 Aligned_cols=94 Identities=11% Similarity=0.081 Sum_probs=62.3
Q ss_pred ceEEeccccCCCCCCEEEEEEEEeeee---------cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCc
Q 013865 91 EWTVVGALNGSLKDQEVLIRGRVHTTR---------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (435)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~R---------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~es 161 (435)
...+|.+|.+-..|..++|+|||.++- ..| ++.=+.|.|+++.|.+++-... . -+| ..|..|+
T Consensus 278 ~~~pI~~L~~~~~g~~~~I~grV~~~~~~R~f~~~~g~g-kv~s~~l~D~tG~IR~t~w~~~--~----d~~-~~l~~G~ 349 (637)
T PRK12366 278 EIVNIEELTEFEDGEEVDVKGRIIAISDKREVERDDRTA-EVQDIELADGTGRVRVSFWGEK--A----KIL-ENLKEGD 349 (637)
T ss_pred CceeHHHCCcccCCCEEEEEEEEEecCCceEEEcCCCcE-EEEEEEEEcCCCeEEEEEeCch--h----hhh-cccCCCC
Confidence 345677776543688999999998862 235 7788899999999999997431 1 122 3468999
Q ss_pred EEEEEEEEecCCcccCCCceeEEEEEeEEEEe
Q 013865 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 193 (435)
Q Consensus 162 iV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vl 193 (435)
++.|.|-..+.-... ...+++||.+..-..+
T Consensus 350 vy~is~~~vk~y~~~-~~~~~~El~~~~~s~I 380 (637)
T PRK12366 350 AVKIENCKVRTYYDN-EGEKRVDLNAGYSSEI 380 (637)
T ss_pred EEEEecCEEeecccc-CCCcCEEEEcCCceEE
Confidence 999997554411110 1124588888654433
|
|
| >PRK07135 dnaE DNA polymerase III DnaE; Validated | Back alignment and domain information |
|---|
Probab=80.80 E-value=7.3 Score=45.38 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=49.7
Q ss_pred CCCEEEEEEEEeeeec---CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 103 KDQEVLIRGRVHTTRP---VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 103 ~g~~V~v~GrV~~~R~---~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.++.|+|.|.|.++|. .|+.|+|+.|.|.++.+.+++..+ .++....+..++++.|+|....
T Consensus 896 ~~~~~~v~g~i~~~~~~~K~g~~maf~~~eD~~~~~e~~~F~~-------~~~~~~~l~~~~~~~~~~~~~~ 960 (973)
T PRK07135 896 INTEYRLAIEVKNVKRLRKANKEYKKVILSDDSVEITIFVNDN-------DYLLFETLKKGDIYEFLISKSK 960 (973)
T ss_pred CCCeEEEEEEEEEEEEEeeCCCeEEEEEEEECCCcEEEEEcHH-------HHHHHHHhhcCCEEEEEEEEcC
Confidence 4778999999998654 477899999999999999999843 2333345888999999998754
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 435 | ||||
| 1asy_A | 490 | Class Ii Aminoacyl Transfer Rna Synthetases: Crysta | 8e-84 | ||
| 1eov_A | 487 | Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 | 1e-83 | ||
| 3i7f_A | 548 | Aspartyl Trna Synthetase From Entamoeba Histolytica | 4e-72 | ||
| 3nel_A | 438 | Aspartyl-Trna Synthetase Complexed With Aspartic Ac | 3e-38 | ||
| 1b8a_A | 438 | Aspartyl-trna Synthetase Length = 438 | 6e-38 | ||
| 1wyd_A | 429 | Crystal Structure Of Aspartyl-Trna Synthetase From | 5e-36 | ||
| 1n9w_A | 422 | Crystal Structure Of The Non-Discriminating And Arc | 2e-30 | ||
| 1x54_A | 434 | Crystal Structure Of Asparaginyl-trna Synthetase Fr | 9e-23 | ||
| 3m4p_A | 456 | Entamoeba Histolytica Asparaginyl-Trna Synthetase ( | 7e-19 | ||
| 2xti_A | 437 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 8e-14 | ||
| 2xgt_A | 435 | Asparaginyl-Trna Synthetase From Brugia Malayi Comp | 9e-14 | ||
| 1efw_A | 580 | Crystal Structure Of Aspartyl-Trna Synthetase From | 2e-13 | ||
| 1eqr_A | 590 | Crystal Structure Of Free Aspartyl-Trna Synthetase | 5e-12 | ||
| 1c0a_A | 585 | Crystal Structure Of The E. Coli Aspartyl-Trna Synt | 6e-12 | ||
| 4ah6_A | 617 | Human Mitochondrial Aspartyl-Trna Synthetase Length | 3e-10 | ||
| 1bbu_A | 504 | Lysyl-Trna Synthetase (Lyss) Complexed With Lysine | 2e-09 | ||
| 1lyl_A | 504 | Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe | 4e-08 | ||
| 4ex5_A | 529 | Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr | 1e-07 | ||
| 4dpg_A | 513 | Crystal Structure Of Human Lysrs: P38/aimp2 Complex | 2e-05 | ||
| 3bju_A | 521 | Crystal Structure Of Tetrameric Form Of Human Lysyl | 2e-05 | ||
| 3e9h_A | 493 | Lysyl-Trna Synthetase From Bacillus Stearothermophi | 1e-04 | ||
| 1nnh_A | 294 | Hypothetical Protein From Pyrococcus Furiosus Pfu-1 | 6e-04 |
| >pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 | Back alignment and structure |
|
| >pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 | Back alignment and structure |
|
| >pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 | Back alignment and structure |
|
| >pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 | Back alignment and structure |
|
| >pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 | Back alignment and structure |
|
| >pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 | Back alignment and structure |
|
| >pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 | Back alignment and structure |
|
| >pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 | Back alignment and structure |
|
| >pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 | Back alignment and structure |
|
| >pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 | Back alignment and structure |
|
| >pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 | Back alignment and structure |
|
| >pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 | Back alignment and structure |
|
| >pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 | Back alignment and structure |
|
| >pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 | Back alignment and structure |
|
| >pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 | Back alignment and structure |
|
| >pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 | Back alignment and structure |
|
| >pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 | Back alignment and structure |
|
| >pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I Length = 513 | Back alignment and structure |
|
| >pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna Synthetase Length = 521 | Back alignment and structure |
|
| >pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 | Back alignment and structure |
|
| >pdb|1NNH|A Chain A, Hypothetical Protein From Pyrococcus Furiosus Pfu-1801964 Length = 294 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 | Back alignment and structure |
|---|
Score = 427 bits (1101), Expect = e-147
Identities = 178/381 (46%), Positives = 238/381 (62%), Gaps = 21/381 (5%)
Query: 61 ANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALN-GSLKDQEVLIRGRVHTTRPV 119
+NYG +PL + + + G++ L+ D+EVL R RVH TR
Sbjct: 2 KDNYGKLPLIQSRDSDRT----------GQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQ 51
Query: 120 GNKLAFVVVRERVSTVQCLATVK-PDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178
G LAF+ +R++ S +Q L ++SK MV++ SL+ ESIV V G+V D IK
Sbjct: 52 GATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKS 111
Query: 179 ATQQ-VEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRV 236
AT Q +E+ I K+Y +S + PI +EDASRSEAE E A P VN DTRL+ RV
Sbjct: 112 ATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGL-----PVVNLDTRLDYRV 166
Query: 237 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSA 296
ID+RT+ NQ IFRIQ+ V +FR++L ++ F E+HTPKL+ SEGGS+VF + Y A
Sbjct: 167 IDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKA 226
Query: 297 CLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMD 356
LAQSPQ +KQ I DF RV+E GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D
Sbjct: 227 YLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLD 286
Query: 357 IVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY--KPKTLRLTFEEGVQMLKDAGVEI 414
+ LFV IF L E+E V KQYP E K K +RLT++EG++ML+ AG EI
Sbjct: 287 TLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEI 346
Query: 415 DPLGDLNTESERKLGQLVLEK 435
DL+TE+E+ LG+LV +K
Sbjct: 347 GDFEDLSTENEKFLGKLVRDK 367
|
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 | Back alignment and structure |
|---|
Score = 413 bits (1063), Expect = e-141
Identities = 165/444 (37%), Positives = 239/444 (53%), Gaps = 57/444 (12%)
Query: 32 KKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGRE 91
A + +K E N+ +P+ + Q G +
Sbjct: 4 SMAATQEKKPQLPPVVLLK----TPELVSGENFKVMPMHQSQP----------CYKTGLK 49
Query: 92 WTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151
+T + L ++ ++ V IR RV R G + F+ +R+ + T Q L +K +++SKE V
Sbjct: 50 YTEIEELVPAMAEKTVTIRARVQAVRGKG-NMVFLFLRKGIYTCQALV-MKSETISKEFV 107
Query: 152 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQ-VEVQIKKLYCVSRAAKT-PITIEDASRS 209
+F + +S ESI D+ G+V + I+ ATQQ VE+ + + VS A P+ IED +
Sbjct: 108 QFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFP 167
Query: 210 EAEIEKAS--------------------------------------KEGVQLPRVNQDTR 231
+ +K + +V+QDTR
Sbjct: 168 SSVFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTR 227
Query: 232 LNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY 291
L+NR++D+RT+ N IFRIQS +FR+FL S+ FVEIHTPKLI SSEGGS +F + Y
Sbjct: 228 LDNRMLDLRTVTNIAIFRIQSACCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKY 287
Query: 292 KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY 351
+ A LAQSPQL+KQM+I GDF +VFE GPVFRAE+S T RHL EF GLD+EMEI ++Y
Sbjct: 288 FDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRHLTEFEGLDIEMEIVENY 347
Query: 352 SEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 411
E +D++++LF IFD + EL+ + KQYPFE L Y+P LRLT++E ++ML+ +G
Sbjct: 348 HECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIYRP-FLRLTYKEAIEMLRASG 406
Query: 412 VEIDPLGDLNTESERKLGQLVLEK 435
I D T E KLG+L+ K
Sbjct: 407 ETIGDYDDFTTPQEVKLGELIKAK 430
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 | Back alignment and structure |
|---|
Score = 397 bits (1022), Expect = e-136
Identities = 105/347 (30%), Positives = 168/347 (48%), Gaps = 29/347 (8%)
Query: 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE 149
+ L Q+V + G V + +G + F+ +R+R VQ T V E
Sbjct: 2 YRTHYSSEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQI--TAPKKKVDPE 58
Query: 150 MVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASR 208
+ + + L +E +V V GVV A E+ +K+ ++RA P+ +
Sbjct: 59 LFKLIPKLRSEDVVAVEGVV----NFTPKAKLGFEILPEKIVVLNRAETPLPLDPTGKVK 114
Query: 209 SEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFV 268
DTRL+NR +D+R IF+I+S V R F F+
Sbjct: 115 -----------------AELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFI 157
Query: 269 EIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED 328
EIHTPK+IA ++EGG+ +F + Y + A LAQSPQL+KQ+ + RV+E P+FRAE+
Sbjct: 158 EIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEE 217
Query: 329 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP 388
T RHL E +D EM + EVM ++RL + + KEL+ + +
Sbjct: 218 HNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELEEPK 277
Query: 389 LKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
L + R+++++ +++L D G EI D++TE ER LG+ ++E
Sbjct: 278 LPFP----RVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMMEN 320
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 | Back alignment and structure |
|---|
Score = 358 bits (920), Expect = e-121
Identities = 99/342 (28%), Positives = 169/342 (49%), Gaps = 34/342 (9%)
Query: 90 REWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE 149
+ + +EV+ G VH R +G F+++R++ Q + +
Sbjct: 2 YRSHFIADVTPEYDGKEVIWAGWVHLLRDLG-GKKFIILRDKTGLGQVVV-----DKNSS 55
Query: 150 MVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASR 208
+ L+ ES++ V G+V K A + +E+ +++ +S+A P+ + +
Sbjct: 56 AFGISQELTQESVIQVRGIV----KADKRAPRGIELHAEEITLLSKAKAPLPLDVSGKVK 111
Query: 209 SEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFV 268
+ + DTRL RV+D+R Q + +IQS FR+ L E F+
Sbjct: 112 A-----------------DIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFI 154
Query: 269 EIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED 328
EI TPK+IA ++EGG+ +F + Y G+ A LAQSPQL+K++ + G RVFE P +RAE+
Sbjct: 155 EIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEE 213
Query: 329 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP 388
S T HL EF +DVEM Y++VM +++++ I + K+EL+ + + P
Sbjct: 214 SDTPFHLAEFISMDVEMAF-ADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPEVK 272
Query: 389 LKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQ 430
+ K RL + E +++L+ G I D+ T R L +
Sbjct: 273 IPIK----RLKYTEAIEILRSKGYNIKFGDDIGTPELRILNE 310
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 | Back alignment and structure |
|---|
Score = 349 bits (899), Expect = e-118
Identities = 100/333 (30%), Positives = 161/333 (48%), Gaps = 40/333 (12%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
QEV + G +H R +G ++ F+++R+R VQ + + ES +
Sbjct: 13 GQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGGL------------KLPLPESAL 59
Query: 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQ 222
V G+V VE A +EVQ K++ +S A + P+ I
Sbjct: 60 RVRGLV----VENAKAPGGLEVQAKEVEVLSPALEPTPVEIPKEEW-------------- 101
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
R N DT L R + +R + ++Q+ + FR++L ++F EI TPK++ +EG
Sbjct: 102 --RANPDTLLEYRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEG 159
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342
GS +F +DY + A LAQSPQL+KQ+ + F RV+E PV+R E+ +T RHL E+ LD
Sbjct: 160 GSGLFGVDYFEKRAYLAQSPQLYKQIMVGV-FERVYEVAPVWRMEEHHTSRHLNEYLSLD 218
Query: 343 VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEE 402
VEM ++M + + L + + N E+ + +P P RLT E
Sbjct: 219 VEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIP----RLTHAE 274
Query: 403 GVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
++LK+ + DL+ E+ER LG+ E+
Sbjct: 275 AKRILKE-ELGYPVGQDLSEEAERLLGEYAKER 306
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 | Back alignment and structure |
|---|
Score = 230 bits (588), Expect = 4e-71
Identities = 89/341 (26%), Positives = 155/341 (45%), Gaps = 30/341 (8%)
Query: 91 EWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEM 150
E + L ++V + G V+T VG K F+ +R+ VQ V + V +E
Sbjct: 3 EKVYCQEVKPELDGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQA--VVAKNVVGEET 59
Query: 151 VRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSE 210
+ L ES V V G+V + A EV ++KL + ++ PI
Sbjct: 60 FEKAKKLGRESSVIVEGIV----KADERAPGGAEVHVEKLEVIQAVSEFPIPE------- 108
Query: 211 AEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEI 270
+ + + L+ R + IRT I +++ + R++LL + + E+
Sbjct: 109 -----------NPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEV 157
Query: 271 HTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330
P L+ G+ EGG+ +F+L Y + A L+QS QL+ + +I G +V+ P FRAE S
Sbjct: 158 FPPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEAAIFG-LEKVWSLTPSFRAEKSR 216
Query: 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYP-FEPL 389
T RHL EF L++E ++M + + L + + KKE+E +
Sbjct: 217 TRRHLTEFWHLELEAAW-MDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLKNT 275
Query: 390 KYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQ 430
+P R++++E + +L+ GV ++ DL + ER L +
Sbjct: 276 --EPPFPRISYDEAIDILQSKGVNVEWGDDLGADEERVLTE 314
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 | Back alignment and structure |
|---|
Score = 204 bits (521), Expect = 3e-61
Identities = 77/341 (22%), Positives = 137/341 (40%), Gaps = 47/341 (13%)
Query: 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162
+++ V I+G +H R G L F ++R+ +Q + +++ E
Sbjct: 10 RNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQV--LLMDKLCQTYDAL---TVNTECT 64
Query: 163 VDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQ 222
V++ G + E K A E+ + A I V
Sbjct: 65 VEIYGAI-KEVPEGKEAPNGHELIADFWKIIGNAPPGGIDN-----------------VL 106
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+ D L+NR + IR + R+++ R+ + +VE+ P L+ EG
Sbjct: 107 NEEASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEG 166
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342
GS +F LDY G+ + L QS QL+ + I G VF +RAE S T RHL E+ ++
Sbjct: 167 GSTLFNLDYFGEQSFLTQSSQLYLETCIPT-LGDVFCIAQSYRAEKSRTRRHLAEYAHVE 225
Query: 343 VEMEIKKHYSEVMDIVDRLFVTIFDGL--NNVCKKELEAVAKQY-----PFEPLKYKPKT 395
E ++M+ ++ L D L + KK LE + ++ PF
Sbjct: 226 AECPFITL-DDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQPPERPFL-------- 276
Query: 396 LRLTFEEGVQMLKDAGVEIDPLG------DLNTESERKLGQ 430
R+ +++ ++ L++ VE + D+ +ER +
Sbjct: 277 -RMEYKDAIKWLQEHNVENEFGNTFTYGEDIAEAAERFMTD 316
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 | Back alignment and structure |
|---|
Score = 204 bits (522), Expect = 3e-61
Identities = 73/344 (21%), Positives = 144/344 (41%), Gaps = 45/344 (13%)
Query: 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSN 159
L+ + V +G + R L FV +R+ QC + + + V+ L+
Sbjct: 26 AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQC--VIFGKELCEP--EKVKLLTR 81
Query: 160 ESIVDVIG-VVSVPD---VEIKGATQQVEVQIKKLYCVSRAA--KTPITIEDASRSEAEI 213
E +++ G + + +E+Q+ + + + I +D+S
Sbjct: 82 ECSLEITGRLNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIINKDSSI----- 136
Query: 214 EKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP 273
++ NR I IR+ Q + +++S++ FR++ +F EI P
Sbjct: 137 ---------------PQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPP 181
Query: 274 KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333
++ EGGS +F+L Y + A L QS QL+ + I G+ F +RAE S T R
Sbjct: 182 TIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIAS-LGKSFCMLSSYRAEQSRTVR 240
Query: 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP 393
HL E+ L+ E+ + ++++ ++ L T+ D + V ++ P P
Sbjct: 241 HLAEYLHLEAELPF-ISFEDLLNHLEDLVCTVIDNVMAVHGDKIRK------MNPHLKLP 293
Query: 394 KT--LRLTFEEGVQMLKDAGV--EIDPLG---DLNTESERKLGQ 430
R+T+ + ++ D G+ + P D++ + ER++
Sbjct: 294 TRPFKRMTYADAIKYCNDHGILNKDKPFEYGEDISEKPERQMTD 337
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 2e-44
Identities = 39/202 (19%), Positives = 67/202 (33%), Gaps = 31/202 (15%)
Query: 235 RVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP-------KLIAGSSEGGSAVF 287
++I + IQ+++ F + E F + L + G
Sbjct: 2 NAVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPA 61
Query: 288 RLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEM 345
++ G L S LHKQ++I ++F P R E RH EFT LD E+
Sbjct: 62 EVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEV 121
Query: 346 EIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQ 405
E + ++M +++RL +F +E FE + E ++
Sbjct: 122 E-RAKMEDIMRLIERLVYGLFRKAEEWTGREFPKTK---RFE---------VFEYSEVLE 168
Query: 406 MLKDAGVEIDPLGDLNTESERK 427
D E +
Sbjct: 169 EFGS---------DEKASQEME 181
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 4e-29
Identities = 91/320 (28%), Positives = 139/320 (43%), Gaps = 59/320 (18%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G+L + +EV++ G V+ R +G L F+ +R+R VQ P S + VR
Sbjct: 8 GSLRETHVGEEVVLEGWVNRRRDLGG-LIFLDLRDREGLVQL--VAHPASPAYATAERVR 64
Query: 156 SLSNESIVDVIGVVSV-PDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIE 214
E +V G+V + P+ + AT +VEV++ L ++ A P ++ R E E E
Sbjct: 65 ---PEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRGEEEKE 121
Query: 215 KASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPK 274
+++ RL R +D+R Q R++ +V FL E FV++ TP
Sbjct: 122 -----------ASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPF 170
Query: 275 LIAGSSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAE 327
L + EG R D+ G L QSPQL KQM + R F+ FR E
Sbjct: 171 LTKSTPEGA----R-DFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDE 225
Query: 328 DSYTHRHLCEFTGLDVEMEIKKHYS-----EVMDIVDRLFVTIFDGLNNVCKKELEAVAK 382
D R +FT LD+EM S +V+++ +RL +F +E V
Sbjct: 226 DLRADRQP-DFTQLDLEM------SFVEVEDVLELNERLMAHVF--------REALGVEL 270
Query: 383 QYPFEPLKYKPKTLRLTFEE 402
PF RL++EE
Sbjct: 271 PLPFP---------RLSYEE 281
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 3e-24
Identities = 81/322 (25%), Positives = 131/322 (40%), Gaps = 69/322 (21%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q+V + G V+ R +G+ L F+ +R+R VQ PD + ++
Sbjct: 7 GQLRLSHVGQQVTLCGWVNRRRDLGS-LIFIDMRDREGIVQV--FFDPDR--ADALKLAS 61
Query: 156 SLSNESIVDVIGVVSV-PDVEI--KGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAE 212
L NE + V G V + I AT ++EV L ++RA P+
Sbjct: 62 ELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRADVLPLDSNH------- 114
Query: 213 IEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHT 272
++ RL R +D+R + ++++ ++ R+F+ F++I T
Sbjct: 115 ------------VNTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIET 162
Query: 273 PKLIAGSSEGGSAVFRLDY-------KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFR 325
P L + EG R DY KG+ L QSPQL KQ+ + F R ++ FR
Sbjct: 163 PMLTKATPEGA----R-DYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFR 217
Query: 326 AEDSYTHRHLCEFTGLDVEMEIKKHYS-----EVMDIVDRLFVTIFDGLNNVCKKELEAV 380
ED R EFT +DVE S +V ++++ L ++ + V +L
Sbjct: 218 DEDLRADRQP-EFTQIDVET------SFMTAPQVREVMEALVRHLWLEVKGV---DLG-- 265
Query: 381 AKQYPFEPLKYKPKTLRLTFEE 402
F +TF E
Sbjct: 266 ----DFP---------VMTFAE 274
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Length = 521 | Back alignment and structure |
|---|
Score = 71.0 bits (175), Expect = 2e-13
Identities = 82/360 (22%), Positives = 134/360 (37%), Gaps = 77/360 (21%)
Query: 102 LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161
L D + + GR+H R G KL F +R +Q +A + +E + L
Sbjct: 53 LTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNYKSEEEFIHINNKLR--- 109
Query: 162 IVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGV 221
D+IGV P G T++ E+ I EI S
Sbjct: 110 RGDIIGVQGNP-----GKTKKGELSII--------PY-------------EITLLSPCLH 143
Query: 222 QLPRV-----NQDTRLNNRVIDIRTLANQG---IFRIQSQVGNIFRQFLLSENFVEIHTP 273
LP + +++TR R +D+ + N F I+S++ R FL F+EI TP
Sbjct: 144 MLPHLHFGLKDKETRYRQRYLDL--ILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETP 201
Query: 274 KL--IAGSSEGGSAVFR--------LD---YKGQSACLAQSPQLHKQMSICGDFGRVFET 320
+ I G G A + LD Y + +P+L+ +M + G RV+E
Sbjct: 202 MMNIIPG---GAVA--KPFITYHNELDMNLY------MRIAPELYHKMLVVGGIDRVYEI 250
Query: 321 GPVFRAE--DSYTHRHLCEFTGLDVEMEI---KKHYSEVMDIVDRLFVTIFDGLNNVCKK 375
G FR E D H EFT E Y ++M+I +++ + + K
Sbjct: 251 GRQFRNEGID---LTHNPEFT----TCEFYMAYADYHDLMEITEKMVSGMVKHITGSYKV 303
Query: 376 ELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
+ + + P R+ E ++ K G+++ TE RK+ +
Sbjct: 304 TYHPDGPEGQAYDVDFTPPFRRINMVEELE--KALGMKLPETNLFETEETRKILDDICVA 361
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 | Back alignment and structure |
|---|
Score = 57.6 bits (140), Expect = 3e-09
Identities = 34/209 (16%), Positives = 59/209 (28%), Gaps = 50/209 (23%)
Query: 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKL---IAGSSEGGSAV-FRLDYKGQSACLAQ-- 300
++ + R+F +E+ TP + V F + G
Sbjct: 35 NLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVT---DIHLVPFETRFVGPGHSQGMNL 91
Query: 301 ----SPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI---KKHYSE 353
SP+ H + + G VF+ FR E+ H EFT +E
Sbjct: 92 WLMTSPEYHMKRLLVAGCGPVFQLCRSFRNEEMGR-YHNPEFT----MLEWYRPHYDMYR 146
Query: 354 VMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLT--------FEEGVQ 405
+M+ VD L + V E L Y+ LR + +
Sbjct: 147 LMNEVDDLL---------------QQVLDCPAAESLSYQQAFLRYLEIDPLSADKTQLRE 191
Query: 406 MLKDAGVEIDPLGDLNTESERKLGQLVLE 434
+ + ++E L+
Sbjct: 192 VAAKLDLSNVA------DTEEDRDTLLQL 214
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 51.0 bits (121), Expect = 5e-07
Identities = 66/483 (13%), Positives = 134/483 (27%), Gaps = 135/483 (27%)
Query: 10 VQEEVDSSSQSISKKAAKKEAAKKAKEER---------RKEAEAAASAASALSIEEEGPL 60
++ D +SK+ K K+ E E L
Sbjct: 35 CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV-------EEVL 87
Query: 61 ANNYGDV--PLQELQSVNDPQ--TGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTT 116
NY + P++ P T + E + R + D +V + V
Sbjct: 88 RINYKFLMSPIKT--EQRQPSMMTRMYIEQRD-RLYN----------DNQVFAKYNVSRL 134
Query: 117 RPVGNKLAFVVVRERVS---TV--------QCLA--TVKPDSVSKEMVRFVRSLSNESIV 163
+P KL ++ R + + +A V +M + L+
Sbjct: 135 QPY-LKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN----- 188
Query: 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYC--VSRAAKTPITIEDASRSEAEI--EKASKE 219
+ + P+ ++ Q++ QI + ++ + I + K +
Sbjct: 189 --LKNCNSPETVLE-MLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYEN 245
Query: 220 G------VQLPRVNQD----------TRLNNRVIDIRTLANQGIFRI--------QSQVG 255
VQ + TR +V D + A + +V
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTR-FKQVTDFLSAATTTHISLDHHSMTLTPDEVK 304
Query: 256 NIFRQFL------LSENFVEIHTP---KLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHK 306
++ ++L L + + P +IA S G A D C +L
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTN-PRRLSIIAESIRDGLA--TWDNWKHVNC----DKLTT 357
Query: 307 QMSIC------GDFGRVFETGPVFRAEDSY-THRHLCEFTGLDVEMEIKKHYSEVMDIVD 359
+ ++ ++F+ VF ++ L ++ S+VM +V+
Sbjct: 358 IIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTILLSLIWF---DVI----KSDVMVVVN 409
Query: 360 RLF-------------VTIFDGLNNVCKKELEAVAK------QYPFEPLKYKPKTLRLTF 400
+L ++I + K A Y P + L +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI-PKTFDSDDLIPPY 468
Query: 401 EEG 403
+
Sbjct: 469 LDQ 471
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 45.2 bits (106), Expect = 4e-05
Identities = 43/305 (14%), Positives = 95/305 (31%), Gaps = 66/305 (21%)
Query: 97 ALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRS 156
L+ +D + V TT P + +R+ ++T V D ++ + +
Sbjct: 310 YLDCRPQD----LPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNV 365
Query: 157 LSNESIVDVIGVVSV--PDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIE 214
L + +SV P I + + ++ + + + + +E
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHI---PTIL---LSLIWFDV-IKSDVMVVVNKLHKYSLVE 418
Query: 215 KASKE------GVQL---PRVNQDTRLNNRVID----IRTLANQGIFRI----------- 250
K KE + L ++ + L+ ++D +T + +
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIG 478
Query: 251 -------QSQVGNIFRQFLLSENFVE---IHTPKLIAGSSEGGSAVFRLD-YKGQSACLA 299
+ +FR L F+E H S + + +L YK
Sbjct: 479 HHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPY--ICD 536
Query: 300 QSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEM----EIKKHYSEVM 355
P+ + ++ DF + + E + ++T L + + E + + E
Sbjct: 537 NDPKYERLVNAILDF--------LPKIE---ENLICSKYTDL-LRIALMAEDEAIFEEAH 584
Query: 356 DIVDR 360
V R
Sbjct: 585 KQVQR 589
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 | Back alignment and structure |
|---|
Score = 50.2 bits (121), Expect = 7e-07
Identities = 80/365 (21%), Positives = 140/365 (38%), Gaps = 100/365 (27%)
Query: 103 KDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162
+ EV + GR+ T R +G K F +++ +Q V+ D V ++ + +
Sbjct: 55 QQIEVAVAGRIMTKRGMG-KAGFAHIQDVTGQIQIY--VRQDDVGEQQYELFKISD---L 108
Query: 163 VDVIGVVSVPDVEIKGA---TQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKE 219
D++GV +G T+ E+ IK VS E +K
Sbjct: 109 GDIVGV--------RGTMFKTKVGELSIK----VS-----------------SYEFLTKA 139
Query: 220 GVQLPRV-----NQDTRLNNRVIDIRTLANQG---IFRIQSQVGNIFRQFLLSENFVEIH 271
LP + + R R +D+ + N F +S + R++L S ++E+
Sbjct: 140 LRPLPEKYHGLKDIEQRYRQRYLDL--IMNPESKKTFITRSLIIQSMRRYLDSHGYLEVE 197
Query: 272 TPKL--IAGSSEGGSAVFR--------LD---YKGQSACLAQSPQLH-KQMSICGDFGRV 317
TP + +AG G +A R LD Y + + +LH K++ I G +V
Sbjct: 198 TPMMHAVAG---GAAA--RPFITHHNALDMTLY------MRIAIELHLKRL-IVGGLEKV 245
Query: 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEI---KKHYSEVMDIVDRLFVTIFDGLNNVCK 374
+E G VFR E T RH EFT +E+ + ++M + + L I +
Sbjct: 246 YEIGRVFRNEGIST-RHNPEFT----MLELYEAYADFRDIMKLTENLIAHIATEVLG--T 298
Query: 375 KELEAVAKQYPFEP-----------LKYKPKTLR--LTFEEGVQMLKDAGVEIDP---LG 418
+++ P +Y ++ EE ++ K+ GVE+ P G
Sbjct: 299 TKIQYGEHLVDLTPEWRRLHMVDAIKEYVGVDFWRQMSDEEARELAKEHGVEVAPHMTFG 358
Query: 419 DLNTE 423
+ E
Sbjct: 359 HIVNE 363
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 52/211 (24%), Positives = 88/211 (41%), Gaps = 53/211 (25%)
Query: 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVFR--------LD---YKG 293
F ++S++ RQF+++ F+E+ TP + I G G SA R LD Y
Sbjct: 182 TFVVRSKILAAIRQFMVARGFMEVETPMMQVIPG---GASA--RPFITHHNALDLDMY-- 234
Query: 294 QSACLAQSPQLH-KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI---KK 349
L +P+L+ K++ + G F RVFE FR E RH EFT ME+
Sbjct: 235 ----LRIAPELYLKRL-VVGGFERVFEINRNFRNEGISV-RHNPEFT----MMELYMAYA 284
Query: 350 HYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP-----------LKYKP---KT 395
Y +++++ + LF T+ + ++ + F KY+P
Sbjct: 285 DYHDLIELTESLFRTLAQEVLG--TTKVTYGEHVFDFGKPFEKLTMREAIKKYRPETDMA 342
Query: 396 LRLTFEEGVQMLKDAGVEIDP---LGDLNTE 423
F+ + + G+ ++ LG + TE
Sbjct: 343 DLDNFDAAKALAESIGITVEKSWGLGRIVTE 373
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 | Back alignment and structure |
|---|
Score = 47.2 bits (113), Expect = 8e-06
Identities = 41/136 (30%), Positives = 59/136 (43%), Gaps = 34/136 (25%)
Query: 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKL--IAGSSEGGSAVFR--------LD---YKG 293
FR +++ R+F+ +F+E+ TP L I G G +A + LD +
Sbjct: 203 TFRARTKAIASIRKFMGDADFMEVETPMLHPIPG---GAAA--KPFVTHHNALDMEMF-- 255
Query: 294 QSACLAQSPQLH-KQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEI---KK 349
L +P+L+ K++ I G F RVFE FR E RH EFT ME
Sbjct: 256 ----LRIAPELYLKRL-IVGGFERVFEINRNFRNEGVSP-RHNPEFT----MMEFYAAYT 305
Query: 350 HYSEVMDIVDRLFVTI 365
Y +MD +RL
Sbjct: 306 DYRWLMDFTERLIRQA 321
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 | Back alignment and structure |
|---|
Score = 44.5 bits (105), Expect = 4e-05
Identities = 37/215 (17%), Positives = 69/215 (32%), Gaps = 29/215 (13%)
Query: 194 SRAAKTP-ITIEDASRSEAEIEKASKEGVQLPRVNQDTR---LNNRVIDIRTLANQGIFR 249
S A P +T R E + + + + ++ L+ R D++ + +
Sbjct: 18 SHGASAPALTKSQTDRLEVLLNPKDEISLNSGKPFRELESELLSRRKKDLQQIYAEEREN 77
Query: 250 IQSQVGNIFRQFLLSENFVEIHTPKLI------AGSSEGGSAVFRLDYKGQ--------- 294
++ +F + F+EI +P LI + + + + ++
Sbjct: 78 YLGKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPML 137
Query: 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE-MEIKKHYSE 353
+ L L K D ++FE GP +R E HL EFT L M
Sbjct: 138 TPNLYNY--LRKLDRALPDPIKIFEIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTREN 194
Query: 354 VMDIVDRLF------VTIFDGLNNVCKKELEAVAK 382
+ I+ I V L+ +
Sbjct: 195 LESIITDFLNHLGIDFKIVGDSCMVFGDTLDVMHG 229
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 435 | |||
| 3i7f_A | 548 | Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi | 100.0 | |
| 1eov_A | 487 | ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy | 100.0 | |
| 3nem_A | 438 | Aspartyl-tRNA synthetase; rossmann fold, OB fold, | 100.0 | |
| 3bju_A | 521 | Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 100.0 | |
| 3m4p_A | 456 | Ehasnrs, asparaginyl-tRNA synthetase, putative; am | 100.0 | |
| 4ex5_A | 529 | Lysine--tRNA ligase; structural genomics, niaid, n | 100.0 | |
| 1wyd_A | 429 | Hypothetical aspartyl-tRNA synthetase; archaea, LI | 100.0 | |
| 2xgt_A | 435 | Asparaginyl-tRNA synthetase, cytoplasmic; ligase, | 100.0 | |
| 1e1o_A | 504 | Lysyl-tRNA synthetase, heat inducible; ligase, ami | 100.0 | |
| 1x54_A | 434 | Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe | 100.0 | |
| 1n9w_A | 422 | Aspartyl-tRNA synthetase 2; biosynthetic protein; | 100.0 | |
| 3a74_A | 493 | Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, | 100.0 | |
| 1l0w_A | 580 | Aspartyl-tRNA synthetase; space-grown crystal, dim | 100.0 | |
| 1c0a_A | 585 | Aspartyl tRNA synthetase; protein-RNA complex, lig | 100.0 | |
| 4ah6_A | 617 | Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo | 100.0 | |
| 3a5y_A | 345 | GENX, putative lysyl-tRNA synthetase; aminoacyl-tR | 100.0 | |
| 1nnh_A | 294 | Asparaginyl-tRNA synthetase-related peptide; struc | 100.0 | |
| 3qtc_A | 290 | Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet | 99.89 | |
| 2rhq_A | 294 | Phenylalanyl-tRNA synthetase alpha chain; heterote | 99.07 | |
| 1b7y_A | 350 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 98.96 | |
| 12as_A | 330 | Asparagine synthetase; ligase, nitrogen fixation; | 98.78 | |
| 3dsq_A | 288 | Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t | 98.77 | |
| 2dq3_A | 425 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 98.26 | |
| 1evl_A | 401 | Threonyl-tRNA synthetase; amino acid recognition, | 98.24 | |
| 1qe0_A | 420 | Histidyl-tRNA synthetase; class II tRNA synthetase | 98.24 | |
| 3pco_A | 327 | Phenylalanyl-tRNA synthetase, alpha subunit; amino | 98.22 | |
| 2i4l_A | 458 | Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud | 98.17 | |
| 1z7m_A | 344 | ATP phosphoribosyltransferase regulatory subunit; | 98.17 | |
| 1wu7_A | 434 | Histidyl-tRNA synthetase; ligase, structural genom | 98.14 | |
| 1nyr_A | 645 | Threonyl-tRNA synthetase 1; ATP, threonine, ligase | 98.06 | |
| 1h4v_B | 421 | Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA | 98.05 | |
| 1hc7_A | 477 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 98.04 | |
| 3od1_A | 400 | ATP phosphoribosyltransferase regulatory subunit; | 98.03 | |
| 1htt_A | 423 | Histidyl-tRNA synthetase; complex (tRNA synthetase | 97.99 | |
| 4e51_A | 467 | Histidine--tRNA ligase; seattle structural genomic | 97.99 | |
| 3net_A | 465 | Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas | 97.97 | |
| 2j3l_A | 572 | Prolyl-tRNA synthetase; class II aminoacyl- T synt | 97.92 | |
| 1nj8_A | 459 | Proline-tRNA synthetase, proline--tRNA ligase; cla | 97.92 | |
| 3rac_A | 373 | Histidine-tRNA ligase; structural genomics, PSI-bi | 97.91 | |
| 3lc0_A | 456 | Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t | 97.89 | |
| 1ses_A | 421 | Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A | 97.89 | |
| 3uh0_A | 460 | Threonyl-tRNA synthetase, mitochondrial; threonine | 97.88 | |
| 3vbb_A | 522 | Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l | 97.88 | |
| 2dq0_A | 455 | Seryl-tRNA synthetase; coiled-coil, homodimer, str | 97.88 | |
| 1qf6_A | 642 | THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m | 97.83 | |
| 1nj1_A | 501 | PROR, proline-tRNA synthetase, proline--tRNA ligas | 97.81 | |
| 3l4g_A | 508 | Phenylalanyl-tRNA synthetase alpha chain; aminoacy | 97.8 | |
| 3err_A | 536 | Fusion protein of microtubule binding domain from | 97.79 | |
| 3a32_A | 471 | Probable threonyl-tRNA synthetase 1; aeropyrum per | 97.74 | |
| 3lss_A | 484 | Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.71 | |
| 4g84_A | 464 | Histidine--tRNA ligase, cytoplasmic; synthetase; 2 | 97.7 | |
| 3ial_A | 518 | Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, | 97.67 | |
| 1usy_A | 275 | ATP phosphoribosyltransferase regulatory subunit; | 97.67 | |
| 3qne_A | 485 | Seryl-tRNA synthetase, cytoplasmic; amino acid bio | 97.66 | |
| 1wle_A | 501 | Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo | 97.66 | |
| 4g85_A | 517 | Histidine-tRNA ligase, cytoplasmic; synthetase; 3. | 97.64 | |
| 2cja_A | 522 | Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE | 97.59 | |
| 4hvc_A | 519 | Bifunctional glutamate/proline--tRNA ligase; ligas | 97.59 | |
| 3mf2_A | 346 | BLL0957 protein; aminoacyl-tRNA synthetase, seryl- | 97.13 | |
| 1ati_A | 505 | Glycyl-tRNA synthetase; protein biosynthesis, liga | 97.08 | |
| 2du7_A | 549 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 97.04 | |
| 2du3_A | 534 | O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l | 96.95 | |
| 3cmq_A | 415 | Phenylalanyl-tRNA synthetase, mitochondrial; class | 96.95 | |
| 2zt5_A | 693 | Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP | 96.76 | |
| 2odr_B | 648 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.61 | |
| 2k50_A | 115 | Replication factor A related protein; uncharacteri | 96.61 | |
| 2odr_A | 665 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.59 | |
| 2odr_D | 685 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.57 | |
| 2odr_C | 701 | Phosphoseryl-tRNA synthetase; phosphoserine tRNA s | 96.48 | |
| 3ikl_A | 459 | DNA polymerase subunit gamma-2, mitochondrial; tra | 96.43 | |
| 3kf6_A | 159 | Protein STN1; OB fold, chromosomal protein, DNA-bi | 96.37 | |
| 1ynx_A | 114 | Replication factor-A protein 1; canonical OB fold, | 96.27 | |
| 3dm3_A | 105 | Replication factor A; probably plays AN essential | 96.18 | |
| 1g5h_A | 454 | Mitochondrial DNA polymerase accessory subunit; in | 96.1 | |
| 3kdf_D | 132 | Replication protein A 32 kDa subunit; wheat GERM c | 95.61 | |
| 3e0e_A | 97 | Replication protein A; structural genomics, PSI-2, | 95.58 | |
| 3ig2_A | 213 | Phenylalanyl-tRNA synthetase beta chain; phers, MC | 95.53 | |
| 3l4g_B | 589 | Phenylalanyl-tRNA synthetase beta chain; aminoacyl | 95.38 | |
| 3au7_A | 402 | TIAS, putative uncharacterized protein; ATP hydrol | 95.24 | |
| 4gop_B | 136 | Putative uncharacterized protein; OB fold, ssDNA b | 95.1 | |
| 1nnx_A | 109 | Protein YGIW; structural genomics, hypothetical pr | 95.07 | |
| 2rhq_B | 795 | Phenylalanyl-tRNA synthetase beta chain; heterotet | 94.61 | |
| 3ica_A | 213 | Phenylalanyl-tRNA synthetase beta chain; APC61692. | 94.58 | |
| 1o7i_A | 119 | SSB, SSO2364, single stranded DNA binding protein; | 93.82 | |
| 1jmc_A | 246 | Protein (replication protein A (RPA)); human ssDNA | 92.93 | |
| 2kbn_A | 109 | Conserved protein; nucleic acid binding protein, b | 91.59 | |
| 1txy_A | 104 | Primosomal replication protein N; OB fold, dimer, | 91.35 | |
| 2pi2_A | 270 | Replication protein A 32 kDa subunit; FULL-length | 90.92 | |
| 3kdf_A | 121 | Replication protein A 14 kDa subunit; wheat GERM c | 90.66 | |
| 2hpi_A | 1220 | DNA polymerase III alpha subunit; POL-beta-like nu | 90.0 | |
| 1b7y_B | 785 | Phers, protein (phenylalanyl-tRNA synthetase); enz | 89.84 | |
| 4gop_C | 444 | Putative uncharacterized protein; OB fold, ssDNA b | 89.13 | |
| 2k75_A | 106 | Uncharacterized protein TA0387; closed beta barrel | 88.74 | |
| 3kf8_A | 220 | Protein STN1; OB fold; 2.40A {Candida tropicalis m | 88.23 | |
| 3vdy_A | 116 | SSB, single-stranded DNA-binding protein SSBB; OB | 87.84 | |
| 3fhw_A | 115 | Primosomal replication protein N; PRIB BPR162 X-RA | 87.82 | |
| 3tqy_A | 158 | Single-stranded DNA-binding protein; DNA replicati | 87.76 | |
| 2vw9_A | 134 | Single-stranded DNA binding protein; DNA replicati | 87.22 | |
| 4gop_A | 114 | Putative uncharacterized protein; OB fold, ssDNA b | 82.93 | |
| 1z9f_A | 153 | Single-strand binding protein; TM0604, single stra | 82.82 | |
| 2pi2_E | 142 | Replication protein A 14 kDa subunit; FULL-length | 82.43 | |
| 3f2b_A | 1041 | DNA-directed DNA polymerase III alpha chain; DNA p | 81.23 |
| >3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-84 Score=683.30 Aligned_cols=368 Identities=43% Similarity=0.689 Sum_probs=315.9
Q ss_pred ccccCCCCCCcccCChhhhhccCCCCCCcccccccCcceEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCe
Q 013865 54 IEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVS 133 (435)
Q Consensus 54 ~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~ 133 (435)
.+++|.++++||++|+.|+|.. ..++++|+.|++|...+.|++|+|+|||+++|.+| |++|++|||+++
T Consensus 22 ~~~~~~~~~~yg~~~~~~~~~~----------~~~~~~~~~i~~l~~~~~g~~V~v~Gwv~~~R~~g-kl~Fi~LrD~~g 90 (548)
T 3i7f_A 22 KTPELVSGENFKVMPMHQSQPC----------YKTGLKYTEIEELVPAMAEKTVTIRARVQAVRGKG-NMVFLFLRKGIY 90 (548)
T ss_dssp BCCCCCCCSSEEECCCCSSCGG----------GCCCCCBCCGGGCSGGGTTCEEEEEEEEEEEEECS-SEEEEEEEETTE
T ss_pred ccccchhhhhcCcCcccccccc----------ccCCCceEEhhhcchhcCCCEEEEEEEEEEEecCC-CeEEEEEEECCe
Confidence 4567899999999999987721 24678999999999889999999999999999999 999999999999
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCc-eeEEEEEeEEEEeecC-CCCCcccccccchHH
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEA 211 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t-~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~ 211 (435)
+||||++.+. .++++|++|++.|+.||+|.|+|+|.+++.++++++ |++||++++|+|||+| .+||++++|+++++.
T Consensus 91 ~iQ~v~~~~~-~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~ 169 (548)
T 3i7f_A 91 TCQALVMKSE-TISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSS 169 (548)
T ss_dssp EEEEEEECSS-SSCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHH
T ss_pred eEEEEEECCC-ccCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhcccccc
Confidence 9999998643 367899999999999999999999999877776774 8899999999999999 899999999988765
Q ss_pred HHHhh--------------------------------------hhcCCCCCCCCccccccccccccccHHHHHHHHHHHH
Q 013865 212 EIEKA--------------------------------------SKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQ 253 (435)
Q Consensus 212 ~~~~~--------------------------------------~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~ 253 (435)
+.++. ......++.+++++||+|||||||++.++++|++||.
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~ 249 (548)
T 3i7f_A 170 VFKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSA 249 (548)
T ss_dssp HHHHHHHHTTCC-------------------------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHH
Confidence 43321 0001234568999999999999999999999999999
Q ss_pred HHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCc
Q 013865 254 VGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHR 333 (435)
Q Consensus 254 i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~r 333 (435)
|+++||+||.++||+||+||+|+++++|||+++|.++||+.++||+||||||||+++++|++|||+||||||||+++|+|
T Consensus 250 i~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~R 329 (548)
T 3i7f_A 250 CCGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRR 329 (548)
T ss_dssp HHHHHHHHHHHTTCEECCCCSBC-------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSS
T ss_pred HHHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcCCC
Q 013865 334 HLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVE 413 (435)
Q Consensus 334 Hl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~g~~ 413 (435)
||||||||||||+|.++|+|+|+++|+||+++++.+.++|..+++.++.+++...+.+ .||+||||.||+++|++.|++
T Consensus 330 Hl~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~~~~~-~pf~rit~~eai~~l~~~g~~ 408 (548)
T 3i7f_A 330 HLTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIY-RPFLRLTYKEAIEMLRASGET 408 (548)
T ss_dssp CCSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCC-CSCEEEEHHHHHHHHHHTTCC
T ss_pred cchhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCcccccc-CCcceeEHHHHHHHHHHcCCC
Confidence 9999999999999986799999999999999999999999999988888888777766 799999999999999999999
Q ss_pred CCCCCCCCcHHHHHHHHHhhc
Q 013865 414 IDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 414 ~~~~~dl~te~E~~L~~~vke 434 (435)
++|++||++++|+.|+++|.+
T Consensus 409 ~~~~~dl~~~~e~~l~~~i~~ 429 (548)
T 3i7f_A 409 IGDYDDFTTPQEVKLGELIKA 429 (548)
T ss_dssp CCTTCCCCHHHHHHHHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHH
Confidence 999999999999999999865
|
| >1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-76 Score=617.72 Aligned_cols=357 Identities=49% Similarity=0.767 Sum_probs=317.1
Q ss_pred CCCcccCChhhhh--ccCCCCCCcccccccCcceEEeccccCC-CCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEE
Q 013865 61 ANNYGDVPLQELQ--SVNDPQTGKWSEAVNGREWTVVGALNGS-LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQC 137 (435)
Q Consensus 61 ~~~Yg~~~~~~~~--~~~~~~p~~~~~~~~~~~~~~i~~l~~~-~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQv 137 (435)
+++||++|+.|++ . .+..+++.|++|... +.|++|+|+|||+++|.+|+.|+|++|||+++.|||
T Consensus 2 ~~~yG~~~~~~s~~~~------------~~~~~~~~~~~l~~~~~~g~~V~v~GwV~~~R~~g~~l~Fi~LrD~~g~iQv 69 (487)
T 1eov_A 2 KDNYGKLPLIQSRDSD------------RTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQG 69 (487)
T ss_dssp CSSEEECCCCCCCGGG------------CCCCCCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEE
T ss_pred Cccccccccccccccc------------ccccceeEHHHhcccccCCCEEEEEEEEEEeeccCCccEEEEEEECCccEEE
Confidence 5689999999775 3 245677889998776 889999999999999999954599999999999999
Q ss_pred EEeeCCCC-CcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCC-ceeEEEEEeEEEEeecC-CCCCcccccccchHHHHH
Q 013865 138 LATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA-TQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIE 214 (435)
Q Consensus 138 v~~~~~~~-~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~-t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~ 214 (435)
|++.+... ++++++++++.|+.||+|.|+|+|..++.+++++ +|++||++++|.|||+| ++||++++++++.+.+.
T Consensus 70 v~~~~~~~~~~~~~~~~~~~l~~e~~V~V~G~v~~~~~~~~~~~~g~~El~~~~i~vl~~a~~~lP~~~~~~~~~~~~~- 148 (487)
T 1eov_A 70 LVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEALPILLEDASRSEAEA- 148 (487)
T ss_dssp EEECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSCSSCHHHHTSCHHHH-
T ss_pred EEeccccccccHHHHHHHhcCCCCCEEEEEEEEEeCCCCCcCCCCCcEEEEEEEEEEeecccccCCcchhhcccccccc-
Confidence 99864322 5678889999999999999999998876544433 48899999999999999 89999988765422100
Q ss_pred hhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCC
Q 013865 215 KASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 294 (435)
Q Consensus 215 ~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~ 294 (435)
+...++++++|+||+|||||||++.++++|++||.|++++|+||.++||+||+||+|+++++++||++|.++|||+
T Consensus 149 ----~~~~~~~~~~e~r~~~R~LdLr~~~~~~~~~~rs~i~~~ir~~~~~~gF~EV~TPil~~~~~~~ga~~f~~~~~~~ 224 (487)
T 1eov_A 149 ----EAAGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKG 224 (487)
T ss_dssp ----HHTTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCSSSSSCCCEEEETTE
T ss_pred ----cccccccCChhhhhhcceeecCCHHHHHHHHHHHHHHHHHHHHHHhCCcEEEeCCEEEEecCCCCcccceeccCCc
Confidence 0123556899999999999999999999999999999999999999999999999999988999999999999999
Q ss_pred ceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhH
Q 013865 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCK 374 (435)
Q Consensus 295 ~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~ 374 (435)
++||+||||||+|+++++|++|||+||||||||+++++||+||||||||||+|.++|+|+|+++|+||+++++.+.++|.
T Consensus 225 ~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR~E~~~~~Rh~pEFt~le~e~af~~~~~dlm~l~E~ll~~l~~~v~~~~~ 304 (487)
T 1eov_A 225 KAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFA 304 (487)
T ss_dssp EEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred cEEcccChHHHHHHHHhcCCCceEEEeccEecCCCCCCccchhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHhhch
Confidence 99999999999999999999999999999999999999999999999999999866999999999999999999999999
Q ss_pred HHHHHhhhcCCCcccCCCC--CCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhc
Q 013865 375 KELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 375 ~~l~~~~~~~~~~~~~~~~--p~~rit~~eai~lL~~~g~~~~~~~dl~te~E~~L~~~vke 434 (435)
.+|..+...++...+++.. ||+||||.||+++|++.|++++|+.|+++++|+.||+++.+
T Consensus 305 ~~l~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~g~~~~~~~d~~~~~e~~l~~~~~~ 366 (487)
T 1eov_A 305 HEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRD 366 (487)
T ss_dssp HHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred hHHHhhhhhcCCcceecccCCCeeEEEHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHH
Confidence 9998888877776677765 89999999999999999999999999999999999998754
|
| >3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-75 Score=603.82 Aligned_cols=314 Identities=34% Similarity=0.525 Sum_probs=288.0
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|++|...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~g~~V~v~Gwv~~~R~~g-~~~Fi~LrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~~~~V~V~G~v~~~ 81 (438)
T 3nem_A 5 HYSSEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKK--KVDPELFKLIPKLRSEDVVAVEGVVNFT 81 (438)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETT--TSCHHHHHHGGGCCTTCEEEEEEEEEEC
T ss_pred EEHHHcchhcCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCC--cCCHHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 5678888778899999999999999999 899999999999999999864 3567888999999999999999999876
Q ss_pred CcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHH
Q 013865 173 DVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~r 251 (435)
+. .+|++||++++|.+||+| .+||+++++. ..+++++|+++||||||++.++++|++|
T Consensus 82 ~~----~~~~~el~~~~i~vl~~~~~~lP~~~~~~-----------------~~~~~e~r~~~R~Ldlr~~~~~~~~~~R 140 (438)
T 3nem_A 82 PK----AKLGFEILPEKIVVLNRAETPLPLDPTGK-----------------VKAELDTRLDNRFMDLRRPEVMAIFKIR 140 (438)
T ss_dssp TT----STTSEEEEEEEEEEEECBCSSCSSCTTSS-----------------SCCCHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred CC----CCCcEEEEEEEEEEEecCCCCCCCCcccc-----------------ccCCHHHHhhchHHHhcCHHHHHHHHHH
Confidence 42 236899999999999999 8999987642 1267899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCC
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t 331 (435)
|.|++++|+||.++||+||+||+|+++++|||++.|.++|||+++||+||||||||+++++|++|||+||||||||++++
T Consensus 141 s~i~~~iR~f~~~~gF~EVeTPiL~~~~~eg~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~E~~~t 220 (438)
T 3nem_A 141 SSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRAEEHNT 220 (438)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSCSSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECCCSSCC
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEecCCCCCCccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcC
Q 013865 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 411 (435)
Q Consensus 332 ~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~g 411 (435)
.|||||||||||||+|.++|+|+|+++|+||+++++.+.++|..+++.++..++ .+..||+||||.||+++|++.|
T Consensus 221 ~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v~~~~~~~l~~~~~~l~----~~~~pf~rity~eai~~l~~~g 296 (438)
T 3nem_A 221 TRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFELE----EPKLPFPRVSYDKALEILGDLG 296 (438)
T ss_dssp TTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCCC----CCCSSCCEEEHHHHHHHHHHTT
T ss_pred cccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHHHhhhhhhHhhcccccc----cCCCCceEEEHHHHHHHHHHcC
Confidence 999999999999999997799999999999999999999988888877765432 1246899999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhc
Q 013865 412 VEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 412 ~~~~~~~dl~te~E~~L~~~vke 434 (435)
++++|++||++++|++|++++.+
T Consensus 297 ~~~~~~~dl~~~~e~~l~~~~~~ 319 (438)
T 3nem_A 297 KEIPWGEDIDTEGERLLGKYMME 319 (438)
T ss_dssp CCCCTTSCCCHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCcHHHHHHHHHhhh
Confidence 99999999999999999999864
|
| >3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-72 Score=596.64 Aligned_cols=327 Identities=21% Similarity=0.300 Sum_probs=269.1
Q ss_pred CCCCCCcccccccCcceE-Eecccc--CCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHH-HH
Q 013865 76 NDPQTGKWSEAVNGREWT-VVGALN--GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKE-MV 151 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~~~-~i~~l~--~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~-~~ 151 (435)
.|||||+|.++++..++. .+.++. +...|++|+|+|||+++|.+|+|++|++|||+++.||||++.+.. .+++ +.
T Consensus 24 ~~pyp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Grv~~~R~~gkk~~F~~LrD~sg~iQvv~~~~~~-~~~~~~~ 102 (521)
T 3bju_A 24 EDPYPHKFHVDISLTDFIQKYSHLQPGDHLTDITLKVAGRIHAKRASGGKLIFYDLRGEGVKLQVMANSRNY-KSEEEFI 102 (521)
T ss_dssp CCSSCSCCCCCSCHHHHHHHHTTCCTTCBCSSCCEEEEEEEEEEEESSSSEEEEEEEETTEEEEEEEEGGGS-SCHHHHH
T ss_pred CCCCCCcCcCccchHHHHHHhhhhccccccCCcEEEEEEEEEEEecCCCCcEEEEEEECCEEEEEEEECCcc-CCHHHHH
Confidence 489999999998875542 333342 345689999999999999999899999999999999999986421 1333 33
Q ss_pred HHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccc
Q 013865 152 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDT 230 (435)
Q Consensus 152 k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~et 230 (435)
++.+.|+.||+|.|+|+|.+++ +|++||++++|.+|++| .+||++.. +..++++
T Consensus 103 ~~~~~l~~gd~V~V~G~v~~t~------~ge~ei~~~~i~~l~~~~~~lP~~~~-------------------~~~~~e~ 157 (521)
T 3bju_A 103 HINNKLRRGDIIGVQGNPGKTK------KGELSIIPYEITLLSPCLHMLPHLHF-------------------GLKDKET 157 (521)
T ss_dssp HHHHHCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCCSCCCCC-----------------------CCHHH
T ss_pred HHHhcCCCCCEEEEEEEEEecC------CCCEEEEEeEEEEeecCCCCCCCccc-------------------cccChhh
Confidence 4567899999999999998753 47899999999999999 89997633 2368899
Q ss_pred cccccccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHh
Q 013865 231 RLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQ 307 (435)
Q Consensus 231 rl~~R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq 307 (435)
|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++.+++++.+|.+ +|||.++||+||||||||
T Consensus 158 r~r~RyLdLr~~~~~~~~~r~Rs~i~~~iR~f~~~~gF~EVeTPiL~~~~gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk 237 (521)
T 3bju_A 158 RYRQRYLDLILNDFVRQKFIIRSKIITYIRSFLDELGFLEIETPMMNIIPGGAVAKPFITYHNELDMNLYMRIAPELYHK 237 (521)
T ss_dssp HHHCHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSCCCCEEEETTTTEEEEECSCSHHHHH
T ss_pred hhhhhhhhHhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCceeeccCCCccccceeeecccCCcceEeeCCHHHHHH
Confidence 9999999999 5999999999999999999999999999999999997654444679988 789999999999999999
Q ss_pred hhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCc
Q 013865 308 MSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFE 387 (435)
Q Consensus 308 ~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~ 387 (435)
++++||++||||||||||||++++ |||||||||||||||++ |+|+|+++|+||+++++.+.+.+...+...+.+.+..
T Consensus 238 ~liv~g~~rVyeig~~FR~E~~~t-rH~pEFtmlE~e~af~d-~~dlm~l~E~li~~v~~~v~~~~~~~~~~~~~d~~~~ 315 (521)
T 3bju_A 238 MLVVGGIDRVYEIGRQFRNEGIDL-THNPEFTTCEFYMAYAD-YHDLMEITEKMVSGMVKHITGSYKVTYHPDGPEGQAY 315 (521)
T ss_dssp HHHHTTCCEEEEEEEEECCSCCBT-TBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHSSSEEEECTTCTTSCCE
T ss_pred HHHhcCcCceEEEEcceeCCCCCC-ccchhhhhhhhhhhcCC-HHHHHHHHHHHHHHHHHHHhCCceEEecccccccccc
Confidence 999999999999999999999866 99999999999999996 9999999999999999999876532221111111222
Q ss_pred ccCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHH-HHHHHHh
Q 013865 388 PLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESE-RKLGQLV 432 (435)
Q Consensus 388 ~~~~~~p~~rit~~eai~lL~~~g~~~~~~~dl~te~E-~~L~~~v 432 (435)
.+++..||+||||.||++.+ .|+++++++||+++++ ..|.++.
T Consensus 316 ~~d~~~pf~rit~~eai~~~--~g~~~~~~~~l~~~~~~~~l~~~~ 359 (521)
T 3bju_A 316 DVDFTPPFRRINMVEELEKA--LGMKLPETNLFETEETRKILDDIC 359 (521)
T ss_dssp EEECCSSCEEEEHHHHHHHH--HTSCCCCGGGTTSHHHHHHHHHHH
T ss_pred eeccCCCcccccHHHHHHHH--hCCCCCccccCCcHHHHHHHHHHH
Confidence 45677899999999999854 4777777788988653 4444443
|
| >3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-71 Score=576.40 Aligned_cols=315 Identities=22% Similarity=0.364 Sum_probs=266.9
Q ss_pred CcceEEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEE
Q 013865 89 GREWTVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGV 168 (435)
Q Consensus 89 ~~~~~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~ 168 (435)
..+++.|+++ ..+.|++|+|+|||+++|.+|++++|++|||+++.||||++.+. +++. ..+..|+.||+|.|+|+
T Consensus 16 ~~~~~~i~~~-~~~~g~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~sg~iQvv~~~~~--~~~~--~~~~~l~~g~~V~V~G~ 90 (456)
T 3m4p_A 16 TPIVCNIRDA-AGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKE--LCEP--EKVKLLTRECSLEITGR 90 (456)
T ss_dssp CCCCEECCST-TCCCSSEEEEEEEEEEEECCSSSEEEEEEECSSCEEEEEEESTT--TTCH--HHHTTCCTTCEEEEEEE
T ss_pred cceEEEhhhh-hhcCCCEEEEEEEEEEEecCCCceEEEEEEeCCccEEEEEeccc--chhh--HHhhcCCCccEEEEEeE
Confidence 4577899998 56889999999999999999978999999999999999998632 2221 23458999999999999
Q ss_pred EecCCccc---CCCc-eeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHH
Q 013865 169 VSVPDVEI---KGAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLA 243 (435)
Q Consensus 169 v~~~~~~~---~~~t-~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~ 243 (435)
|..++... +.++ |++||++++|.||++| .++|.... ...++|+|+++||||||++.
T Consensus 91 v~~~~~~~~~~~~~t~g~~El~~~~i~vl~~a~~~~~~~~~-------------------~~~~~e~r~~~R~LdlR~~~ 151 (456)
T 3m4p_A 91 LNAYAGKNHPPEIADILNLEMQVTEWKVIGESPIDLENIIN-------------------KDSSIPQKMQNRHIVIRSEH 151 (456)
T ss_dssp EECCCSSSCCCSCTTBCSSEEEEEEEEEEECCCGGGTTTSC-------------------TTCCHHHHHHTHHHHTTSHH
T ss_pred EEecCCcccCcccCCCCcEEEEEeEEEEEecCCCCCccccc-------------------ccCCHHHHhhchHHhhhcHH
Confidence 98654321 1223 8899999999999999 55552211 23678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecc
Q 013865 244 NQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPV 323 (435)
Q Consensus 244 ~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~ 323 (435)
++++|++||.|+++||+||.++||+||+||+|+++++|||+++|.++|||+++||+||||||||++++ |++|||+||||
T Consensus 152 ~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~~f~~~~~~~~~~L~~SpqL~lq~l~~-g~~rVyeig~~ 230 (456)
T 3m4p_A 152 TQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGSTLFKLQYFNEPAYLTQSSQLYLESVIA-SLGKSFCMLSS 230 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEEC------CCCCEEEETTEEEEECSCCHHHHHTTHH-HHSSEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCEEEeCCeeecCCCCCccccccccccCCCcccccCHHHHHHHHHh-ccCcEEEEEhh
Confidence 99999999999999999999999999999999998999999999999999999999999999999876 69999999999
Q ss_pred eecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHH
Q 013865 324 FRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403 (435)
Q Consensus 324 FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~ea 403 (435)
||||+++|.|||||||||||||+|++ |+|+|+++|+||+++++.+.+++...+..+...+. ....||+||||.||
T Consensus 231 FR~E~~~t~rH~pEFtmlE~e~af~d-~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~----~~~~pf~rity~eA 305 (456)
T 3m4p_A 231 YRAEQSRTVRHLAEYLHLEAELPFIS-FEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK----LPTRPFKRMTYADA 305 (456)
T ss_dssp ECCCSCCCSSCCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCC----CCCSSCEEEEHHHH
T ss_pred eecCCCCCCcchHHHHHhHHHHhcCC-HHHHHHHHHHHHHHHHHHHhhhhhhhHhhcCcccc----cCCCCCeEeeHHHH
Confidence 99999999999999999999999996 99999999999999999999888776655443221 12458999999999
Q ss_pred HHHHHHcCCC-----CCCCCCCCcHHHHHHHHHhh
Q 013865 404 VQMLKDAGVE-----IDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 404 i~lL~~~g~~-----~~~~~dl~te~E~~L~~~vk 433 (435)
+++|++.|++ ..|++||++++|++|++.++
T Consensus 306 i~~l~~~g~~~~~~~~~~g~~l~~~~e~~l~~~~~ 340 (456)
T 3m4p_A 306 IKYCNDHGILNKDKPFEYGEDISEKPERQMTDEIG 340 (456)
T ss_dssp HHHHHHHTCCSSSSCCCTTCCCCHHHHHHHHHHHT
T ss_pred HHHHHHcCCCccccCcchHHHHHHHHHHHHHHHhC
Confidence 9999998864 35889999999999998774
|
| >4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-69 Score=571.63 Aligned_cols=310 Identities=24% Similarity=0.302 Sum_probs=256.0
Q ss_pred CCCCcccCChhhhh---ccCCCCCCcccccccCcceE-EeccccCC---CCCCEEEEEEEEeeeecCCCceEEEEEEeCC
Q 013865 60 LANNYGDVPLQELQ---SVNDPQTGKWSEAVNGREWT-VVGALNGS---LKDQEVLIRGRVHTTRPVGNKLAFVVVRERV 132 (435)
Q Consensus 60 ~~~~Yg~~~~~~~~---~~~~~~p~~~~~~~~~~~~~-~i~~l~~~---~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~ 132 (435)
+++.|-..|...++ +.+.||||+|.++++..+.. ...++... ..|++|+|+|||+++|.+| |++|++|||++
T Consensus 35 ~~~~~~~~r~~k~~~l~~~g~~yp~~~~~t~~~~~~~~~~~~~~~~~~~~~g~~V~v~GwV~~~R~~G-k~~Fi~LrD~s 113 (529)
T 4ex5_A 35 DENQIVAERRDKLRALRDQGIAYPNDFQPTHHAADLQTAYADADKEALEAKSLEVAIAGRMMLKRVMG-KASFATVQDGS 113 (529)
T ss_dssp -CHHHHHHHHHHHHHHHHTSCSSCCCCCCCCCHHHHHHHTTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEECSS
T ss_pred ChHHHHHHHHHHHHHHHHcCCCCCCCCcCceEHHHHHHHhhccCccccccCCcEEEEEEEEEeeecCC-CeEEEEEEeCC
Confidence 44455555554433 23569999999987764432 22222211 2389999999999999999 89999999999
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHH
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEA 211 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~ 211 (435)
+.||||++.+ .++++++++++.|+.||+|.|+|+|.+++ +|++||++++|.|||+| .+||+...+
T Consensus 114 g~iQvv~~~~--~~~~~~~~~~~~l~~gd~V~V~G~v~~t~------~gelel~~~~i~vLs~a~~plP~k~~~------ 179 (529)
T 4ex5_A 114 GQIQFFVTPA--DVGAETYDAFKKWDLGDIVAARGVLFRTN------KGELSVKCTQLRLLAKALRPLPDKFHG------ 179 (529)
T ss_dssp CEEEEEECHH--HHCHHHHHHHHTCCTTCEEEEEEEEEECT------TSCEEEEEEEEEEEECCSSCCCC----------
T ss_pred eeEEEEEECC--cCCHHHHHHHhcCCCCCEEEEEEEEEEcC------CCcEEEEEEEEEEEecCCCCCCccccC------
Confidence 9999999864 24567788888999999999999998743 47899999999999999 899986432
Q ss_pred HHHhhhhcCCCCCCCCccccccccccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCc--ceeE
Q 013865 212 EIEKASKEGVQLPRVNQDTRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGS--AVFR 288 (435)
Q Consensus 212 ~~~~~~~~~~~~~~~~~etrl~~R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga--~~F~ 288 (435)
..++++||++|||||| ++.++++|++||.|+++||+||+++||+||+||+|+++ +||| .+|.
T Consensus 180 -------------l~d~e~r~r~RyLdLr~~~~~~~~fr~Rs~i~~~iR~ff~~~gFlEVeTPiL~~~--~gGA~a~pF~ 244 (529)
T 4ex5_A 180 -------------LADQETRYRQRYVDLIVTPETRTTFRARTKAIASIRKFMGDADFMEVETPMLHPI--PGGAAAKPFV 244 (529)
T ss_dssp ---------------CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESS--CCSSSSCCCE
T ss_pred -------------CcChhhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCeeecc--CCCCcccccc
Confidence 3678999999999998 69999999999999999999999999999999999854 4444 6897
Q ss_pred e--ccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHH
Q 013865 289 L--DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIF 366 (435)
Q Consensus 289 v--~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~ 366 (435)
+ ++|+.++||+||||||||+|+++|++|||+||||||||+++ .|||||||||||||+|++ |+|+|+++|+||++++
T Consensus 245 t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFtmlE~e~af~d-~~dlm~l~E~li~~v~ 322 (529)
T 4ex5_A 245 THHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRNFRNEGVS-PRHNPEFTMMEFYAAYTD-YRWLMDFTERLIRQAA 322 (529)
T ss_dssp EEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEEECCSCCB-TTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHH
T ss_pred cccccCCcceecccCHHHHHHHHHhcCCCcEEEeehheecCCCC-CCcccHhHhhhhhhhcCC-HHHHHHHHHHHHHHHH
Confidence 6 68999999999999999999999999999999999999984 799999999999999996 9999999999999999
Q ss_pred hhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHH
Q 013865 367 DGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 367 ~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~ 408 (435)
+.+.+.+.. .+....+++..||+||||.||++++.
T Consensus 323 ~~v~~~~~~-------~~~~~~id~~~pf~Rity~eAi~~~~ 357 (529)
T 4ex5_A 323 VDALGTATI-------QYQGRELDLAQPFHRLTITQAIQKYA 357 (529)
T ss_dssp HHHHSCSEE-------EETTEEEETTSCCEEEEHHHHHHHHC
T ss_pred HHHhCcCce-------ecCceeeccCCCceEEEHHHHHHHHh
Confidence 999876421 12233466778999999999998653
|
| >1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-69 Score=555.41 Aligned_cols=309 Identities=32% Similarity=0.536 Sum_probs=279.2
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|+++...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+. +++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~~-----~~~~~~~~l~~~~~v~v~G~v~~~ 78 (429)
T 1wyd_A 5 HFIADVTPEYDGKEVIWAGWVHLLRDLG-GKKFIILRDKTGLGQVVVDKNS-----SAFGISQELTQESVIQVRGIVKAD 78 (429)
T ss_dssp SCTTTCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECTTS-----TTHHHHTTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh-----HHHHHHHhCCCCCEEEEEEEEEec
Confidence 3467776678899999999999999999 7999999999999999997542 456777899999999999999876
Q ss_pred CcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHH
Q 013865 173 DVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~r 251 (435)
+. .+|++||++++|.|||+| .+||++.++. ...+.|+|+++||||||++.++++|++|
T Consensus 79 ~~----~~~~~el~~~~~~vl~~~~~~~P~~~~~~-----------------~~~~~e~r~~~R~Ldlr~~~~~~~~~~r 137 (429)
T 1wyd_A 79 KR----APRGIELHAEEITLLSKAKAPLPLDVSGK-----------------VKADIDTRLRERVLDLRRQEMQAVIKIQ 137 (429)
T ss_dssp SS----SGGGEEEEEEEEEEEECCCSSCSSCSSSC-----------------CCCCHHHHHHTHHHHHTSHHHHHHHHHH
T ss_pred CC----CCccEEEEEeEEEEeccCCCCCCCCcccc-----------------ccCChhHhhhccceeccCHHHHHHHHHH
Confidence 52 357899999999999999 9999876531 1267899999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCC
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYT 331 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t 331 (435)
|.|++++|+||.++||+||+||+|+.+++||++++|.++|+|+++||+||||||+|+ +++|++|||+||||||+|++++
T Consensus 138 s~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~~~~~~~L~~Spql~~~~-~~~g~~rvf~ig~~FR~E~~~~ 216 (429)
T 1wyd_A 138 SLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIYFGKEAFLAQSPQLYKEL-MAGVVERVFEVAPAWRAEESDT 216 (429)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEETTEEEEECSCCHHHHHH-HHHHHSEEEEEEEEECCCCCCS
T ss_pred HHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEecCCceEEecCCcHHHHHH-HHhCcCceEEEcccccccCCcc
Confidence 999999999999999999999999999999999999999999999999999999998 6778999999999999999989
Q ss_pred CccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcC
Q 013865 332 HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAG 411 (435)
Q Consensus 332 ~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~g 411 (435)
.||+|||||||+||+|.+ ++|+|+++|+|++++++.+.++|..+++.++..++. +..||+||||.||++++.+.|
T Consensus 217 ~RH~pEFtqle~e~~~~~-~~dlm~~~e~ll~~l~~~~~~~~~~~l~~~~~~~~~----l~~pf~rity~eA~~~~~~~g 291 (429)
T 1wyd_A 217 PFHLAEFISMDVEMAFAD-YNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPPE----VKIPIKRLKYTEAIEILRSKG 291 (429)
T ss_dssp SSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCCCCC----CCSSCEEEEHHHHHHHHHHSS
T ss_pred ccccceeeEeeeeecCCC-HHHHHHHHHHHHHHHHHHHhccchhhhhhccccccc----CCCCccEEEHHHHHHHHHhcC
Confidence 999999999999999996 999999999999999999999888888877654432 246999999999999999999
Q ss_pred CCCCCCCCCCcHHHHHHHHHhhc
Q 013865 412 VEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 412 ~~~~~~~dl~te~E~~L~~~vke 434 (435)
+++.|++||++++|+.|++.+.+
T Consensus 292 ~~~~~~~~l~~~~e~~l~~~~~~ 314 (429)
T 1wyd_A 292 YNIKFGDDIGTPELRILNEELKE 314 (429)
T ss_dssp CCCCTTSCCCHHHHHHHHHHHCC
T ss_pred CCcccCcccCcHHHHHHHHHhcc
Confidence 98899999999999999998753
|
| >2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-68 Score=554.53 Aligned_cols=307 Identities=24% Similarity=0.390 Sum_probs=256.9
Q ss_pred EeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCC
Q 013865 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD 173 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~ 173 (435)
+|+++. .+.|++|+|+|||+++|.+|++++|++|||+++.||||++.+ .++ .++. ..|+.||+|.|+|+|..++
T Consensus 2 ~i~~~~-~~~~~~V~v~Gwv~~~R~~Gk~~~Fi~LrD~~g~iQvv~~~~---~~~-~~~~-~~l~~~~~v~v~G~v~~~~ 75 (435)
T 2xgt_A 2 KIRDLV-KHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDK---LCQ-TYDA-LTVNTECTVEIYGAIKEVP 75 (435)
T ss_dssp CGGGGG-GGTTSEEEEEEEEEEEEECTTSEEEEEEECSSCEEEEEEEGG---GGS-SHHH-HHCCTTCEEEEEEEEEECC
T ss_pred chhhhh-hcCCCEEEEEEEEEEecccCCCcEEEEEEECCceEEEEECCc---chh-HHHH-hcCCCCCEEEEEEEEEecC
Confidence 355664 478999999999999999987899999999999999999843 121 1222 3699999999999998754
Q ss_pred cccCCCceeEEEEEeEEEEeecC-C--CCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHH
Q 013865 174 VEIKGATQQVEVQIKKLYCVSRA-A--KTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (435)
Q Consensus 174 ~~~~~~t~~lEi~v~~i~vls~~-~--~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~ 250 (435)
.. ++.+|++||+++++.+|+++ + ..|+..+ .++.|+|+++||||||++.++++|++
T Consensus 76 ~~-~~~~g~~El~~~~~~vl~~~~p~~~~pl~~~--------------------~~~~e~r~~~R~Ldlr~~~~~~~~r~ 134 (435)
T 2xgt_A 76 EG-KEAPNGHELIADFWKIIGNAPPGGIDNVLNE--------------------EASVDKMLDNRHLVIRGENAAALLRL 134 (435)
T ss_dssp -------TTEEEEEEEEEEEECCCTTHHHHHCC----------------------CCHHHHHHTHHHHTTSHHHHHHHHH
T ss_pred CC-cCCCCcEEEEEEEEEEeecCCCccccccccc--------------------CCCHHHHhhCeeeeecCHHHHHHHHH
Confidence 21 24468899999999999986 2 1232211 26889999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCC
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~ 330 (435)
||.|++++|+||.++||+||+||+|++++++||+++|.++|||+++||+||||||||++++ |++||||||||||||+++
T Consensus 135 Rs~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~~~g~~~~L~~SpqLylq~l~~-g~~rvfeIg~~FR~E~~~ 213 (435)
T 2xgt_A 135 RAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDYFGEQSFLTQSSQLYLETCIP-TLGDVFCIAQSYRAEKSR 213 (435)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEEETTEEEEECSCSHHHHHHHHH-HHCSEEEEEEEECCCSSC
T ss_pred HHHHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeeccCCcccccCCChHHHHHHhhh-ccCceEEEecceecCCCC
Confidence 9999999999999999999999999998899999999999999999999999999999885 799999999999999999
Q ss_pred CCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHhhhcCCCcccCCCCCCceeeHHHHHHHHH
Q 013865 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKK--ELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~--~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~ 408 (435)
++||+||||||||||+|++ |+|+|+++|+||+++++.+.+.+.. .++.+...+. ....||+||||.||+++|+
T Consensus 214 t~RH~~EFT~lE~e~af~d-~~d~m~~~E~li~~~~~~v~~~~~~~~~~~~~~~~~~----~~~~pf~rity~ea~~~~~ 288 (435)
T 2xgt_A 214 TRRHLAEYAHVEAECPFIT-LDDLMEKIEELVCDTVDRLLADEEAKKLLEHINPKFQ----PPERPFLRMEYKDAIKWLQ 288 (435)
T ss_dssp CTTCCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHTSHHHHHHHHHHSTTCC----CCCSSCEEEEHHHHHHHHH
T ss_pred ccccccceeEEEEEEecCC-HHHHHHHHHHHHHHHHHHHhccccchhhhhhcccccc----ccCCCceEEEHHHHHHHHH
Confidence 9999999999999999996 9999999999999999999876543 2333322111 1135899999999999999
Q ss_pred HcCCC------CCCCCCCCcHHHHHHHHHhh
Q 013865 409 DAGVE------IDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 409 ~~g~~------~~~~~dl~te~E~~L~~~vk 433 (435)
..|+. +.|++|+++++|++|++.+.
T Consensus 289 ~~~~~~~~~~~~~~g~~l~~~~e~~l~~~~~ 319 (435)
T 2xgt_A 289 EHNVENEFGNTFTYGEDIAEAAERFMTDTIN 319 (435)
T ss_dssp HTTCBCTTSCBCCTTSCCCHHHHHHHHHHHT
T ss_pred hcCCCcccccccchhhHHHHHHHHHHHHhcC
Confidence 88764 45778999999999988764
|
| >1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-68 Score=562.06 Aligned_cols=296 Identities=20% Similarity=0.317 Sum_probs=246.0
Q ss_pred CCCCCCcccccccCcceE-EeccccC-C--CCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH
Q 013865 76 NDPQTGKWSEAVNGREWT-VVGALNG-S--LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~~~-~i~~l~~-~--~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~ 151 (435)
.+||||+|.++++..+.. ...++.. . ..|++|+|+|||+++|.+| |++|++|||+++.||||++.+. ++++++
T Consensus 32 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~sg~iQvv~~~~~--~~~~~~ 108 (504)
T 1e1o_A 32 GVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQLYVARDS--LPEGVY 108 (504)
T ss_dssp SCSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETTT--SSTTHH
T ss_pred CCCCCCCCcCceEHHHHHHHhhccCccccccCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEECCc--CCHHHH
Confidence 479999999886654321 1222211 1 1288999999999999999 8999999999999999998542 345566
Q ss_pred H-HHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCcc
Q 013865 152 R-FVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQD 229 (435)
Q Consensus 152 k-~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~e 229 (435)
+ .++.|+.||+|.|+|+|..++ +|++||++++|.||++| .+||.... +.++.+
T Consensus 109 ~~~~~~l~~g~~V~V~G~v~~~~------~ge~ei~~~~i~vl~~a~~plP~k~~-------------------~~~~~e 163 (504)
T 1e1o_A 109 NDQFKKWDLGDIIGARGTLFKTQ------TGELSIHCTELRLLTKALRPLPDKFH-------------------GLQDQE 163 (504)
T ss_dssp HHTGGGCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCSSCCCC--------------------------TT
T ss_pred HHHHhcCCCCCEEEEEEEEEecC------CceEEEEEEEEEEecccCCCCCcccc-------------------CCcChh
Confidence 6 678899999999999998753 47899999999999999 89995421 236789
Q ss_pred ccccccccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHH
Q 013865 230 TRLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHK 306 (435)
Q Consensus 230 trl~~R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~l 306 (435)
+|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++.+++++.+|.| ++||.++||+|||||||
T Consensus 164 ~r~r~RyLdL~~~~~~~~~~r~Rs~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~~~~~~~~~yL~~SpqLyl 243 (504)
T 1e1o_A 164 VRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYL 243 (504)
T ss_dssp HHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSHHHH
T ss_pred hhhhccchhhhcCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEeccCCCCceEEeccCHHHHH
Confidence 99999999996 7999999999999999999999999999999999996543334679998 78999999999999999
Q ss_pred hhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCC
Q 013865 307 QMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPF 386 (435)
Q Consensus 307 q~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~ 386 (435)
|+|+++|++||||||||||||+++ .||||||||||+||+|++ |+|+|+++|+||+++++.+.++|. +. +..
T Consensus 244 k~L~v~G~~rVyeIg~~FR~E~~~-~rH~pEFt~lE~e~af~d-~~dlm~l~E~li~~~~~~v~~~~~--i~-----~~~ 314 (504)
T 1e1o_A 244 KRLVVGGFERVFEINRNFRNEGIS-VRHNPEFTMMELYMAYAD-YHDLIELTESLFRTLAQEVLGTTK--VT-----YGE 314 (504)
T ss_dssp HHHHHHTCCEEEEEEEEECCCCCC-C-CCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHSSSE--EE-----ETT
T ss_pred HHHhhcCCCcEEEEcccccCCCCC-ccccCceeeeeeeecCCC-HHHHHHHHHHHHHHHHHHHhCCce--ee-----eCC
Confidence 999999999999999999999985 499999999999999996 999999999999999999987763 22 222
Q ss_pred cccCCCCCCceeeHHHHHHHHH
Q 013865 387 EPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 387 ~~~~~~~p~~rit~~eai~lL~ 408 (435)
..+++..||+||||.||++.+.
T Consensus 315 ~~i~~~~pf~rity~eAi~~~~ 336 (504)
T 1e1o_A 315 HVFDFGKPFEKLTMREAIKKYR 336 (504)
T ss_dssp EEEETTSCCEEEEHHHHHHHHS
T ss_pred EeeccCCCceEEeHHHHHHHHc
Confidence 2355677999999999998664
|
| >1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-68 Score=550.72 Aligned_cols=310 Identities=28% Similarity=0.419 Sum_probs=278.1
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|+++...+.|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~~~~V~v~G~v~~~R~~g-~~~F~~lrD~~g~iQ~v~~~~--~~~~~~~~~~~~l~~~~~v~v~G~v~~~ 81 (434)
T 1x54_A 5 VYCQEVKPELDGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQAVVAKN--VVGEETFEKAKKLGRESSVIVEGIVKAD 81 (434)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEECHH--HHCHHHHHHHHTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhhHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEECC--cCCHHHHHHHhcCCCCCEEEEEEEEEec
Confidence 4567777678899999999999999999 899999999999999999753 2456778888999999999999999876
Q ss_pred CcccCCCceeEEEEEeEEEEeecCCCCCc--ccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHH
Q 013865 173 DVEIKGATQQVEVQIKKLYCVSRAAKTPI--TIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls~~~~lP~--~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~ 250 (435)
+. .+|++||++++|.|||+|.+||+ +.+. ++.|+|+++||||||++.++++|++
T Consensus 82 ~~----~~~~~el~~~~~~vl~~~~~~P~~~~~~~--------------------~~~e~r~~~R~Ldlr~~~~~~~~~~ 137 (434)
T 1x54_A 82 ER----APGGAEVHVEKLEVIQAVSEFPIPENPEQ--------------------ASPELLLDYRHLHIRTPKASAIMKV 137 (434)
T ss_dssp TT----SGGGEEEEEEEEEEEECCSCCSSCSSGGG--------------------SCHHHHHHTHHHHTTSHHHHHHHHH
T ss_pred CC----CCccEEEEEeEEEEeecCCCCCCcccccC--------------------CCHHHhhhceeeeecCHHHHHHHHH
Confidence 42 35789999999999999988998 5432 5789999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCC
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~ 330 (435)
||.|++++|+||.++||+||+||+|+.+.+||++++|.++|+|+++||+||||||+|+ +++|++|||+||||||+|+++
T Consensus 138 rs~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~~~~~~~Lr~Spel~~~~-~~~g~~rvf~ig~~FR~E~~~ 216 (434)
T 1x54_A 138 KETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYFDKYAYLSQSAQLYLEA-AIFGLEKVWSLTPSFRAEKSR 216 (434)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEETTEEEEECSCSHHHHHH-HHHHHSEEEEEEEEECCCCCC
T ss_pred HHHHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEeecCCcEEeccChHHHHHH-HhcCccceEEEecceecCCCC
Confidence 9999999999999999999999999998899999999999999999999999999998 677899999999999999998
Q ss_pred CCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHc
Q 013865 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 410 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~ 410 (435)
+.||+|||||||+||+|.+ ++|+|+++|+|++++++.+.++|..+|+.++..++.-. .+..||+||||.||++++++.
T Consensus 217 ~~RH~pEFtqle~e~~~~~-~~dlm~~~e~ll~~l~~~v~~~~~~~i~~~~~~~~~~~-~~~~pf~rity~ea~~~~~~~ 294 (434)
T 1x54_A 217 TRRHLTEFWHLELEAAWMD-LWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTTLK-NTEPPFPRISYDEAIDILQSK 294 (434)
T ss_dssp CSSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHHCHHHHHTTCSCCHHHH-TCCSSCCEEEHHHHHHHHHHT
T ss_pred CcccccEEEEeeEEEcCCC-HHHHHHHHHHHHHHHHHHHhhhchhhhhhcCccccccc-ccCCCCcEEEHHHHHHHHHhc
Confidence 8999999999999999996 99999999999999999999888888877665433100 134699999999999999999
Q ss_pred CCCCCCCCCCCcHHHHHHHHHh
Q 013865 411 GVEIDPLGDLNTESERKLGQLV 432 (435)
Q Consensus 411 g~~~~~~~dl~te~E~~L~~~v 432 (435)
|+++.|++||++++|++|++.+
T Consensus 295 g~~~~~~~dl~~~~e~~l~~~~ 316 (434)
T 1x54_A 295 GVNVEWGDDLGADEERVLTEEF 316 (434)
T ss_dssp TCCCCTTCCCCHHHHHHHHTTC
T ss_pred CCCcccCCccChHHHHHHHHHh
Confidence 9988999999999999998754
|
| >1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-67 Score=544.16 Aligned_cols=300 Identities=34% Similarity=0.488 Sum_probs=220.3
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCC-CCcEEEEEEEEec
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLS-NESIVDVIGVVSV 171 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~-~esiV~V~G~v~~ 171 (435)
+.|++|. .+.|++|+|+|||+++|.+| |++|++|||+++.||||++. +.|+ .||+|.|+|+|..
T Consensus 3 ~~~~~l~-~~~~~~V~v~Gwv~~~R~~g-~~~F~~lrD~~g~iQ~v~~~-------------~~l~~~~~~v~v~G~v~~ 67 (422)
T 1n9w_A 3 VLVRDLK-AHVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGG-------------LKLPLPESALRVRGLVVE 67 (422)
T ss_dssp CCGGGGG-GCTTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEES-------------CCCCCTTCEEEEEEEEEE
T ss_pred EEHHHHH-hcCCCEEEEEEEEEEEecCC-CeEEEEEEECCEEEEEEEEc-------------cccCCCCCEEEEEEEEEe
Confidence 4567777 67899999999999999999 89999999999999999973 3699 9999999999987
Q ss_pred CCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHH
Q 013865 172 PDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 250 (435)
Q Consensus 172 ~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~ 250 (435)
++. .+|++||++++|.|||+| .+||++.++. .+..+.|+|+++||||||++.++++|++
T Consensus 68 ~~~----~~~~~el~~~~~~vl~~~~~~~P~~~~~~----------------~~~~~~e~r~~~R~Ldlr~~~~~~~~~~ 127 (422)
T 1n9w_A 68 NAK----APGGLEVQAKEVEVLSPALEPTPVEIPKE----------------EWRANPDTLLEYRYVTLRGEKARAPLKV 127 (422)
T ss_dssp CTT----STTSEEEEEEEEEEEECCCSCCC---------------------------------CHHHHTTSHHHHHHHHH
T ss_pred cCC----CCccEEEEEeEEEEeccCCcCCCCCcccc----------------ccCCCHHHHhhhhHHhhcCHHHHHHHHH
Confidence 652 247899999999999999 9999876531 1236789999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCC
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSY 330 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~ 330 (435)
||.|++++|+||.++||+||+||+|+.+++||++++|.++|+|.++||+||||||+|+++ +|++|||+||||||+|+++
T Consensus 128 rs~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~g~~~~L~~Spel~~~~l~-~g~~rvf~ig~~FR~E~~~ 206 (422)
T 1n9w_A 128 QAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQIMV-GVFERVYEVAPVWRMEEHH 206 (422)
T ss_dssp HHHHHHHHHHHHHHTTCEECCCC----------------------------CHHHHHHHH-HHHSEEEEEEEC-------
T ss_pred HHHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeCCCcEEeeeCHHHHHHHHh-hCCCceeEEeCceECCCCC
Confidence 999999999999999999999999999889999999999999999999999999999987 7799999999999999998
Q ss_pred CCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHc
Q 013865 331 THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDA 410 (435)
Q Consensus 331 t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL~~~ 410 (435)
+.||+|||||||+||+|.++|+|+|+++|+|++++++.+.++|..+|+.++..++.. ..||+||||.||+++|++.
T Consensus 207 ~~RH~pEFtqle~e~~~~~d~~dlm~l~e~ll~~l~~~~~~~~~~~i~~~~~~~~~~----~~pf~rity~eA~~~~~~~ 282 (422)
T 1n9w_A 207 TSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWPSF----PQDIPRLTHAEAKRILKEE 282 (422)
T ss_dssp ------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCCCC----SSSCCEEEHHHHHHHHHHT
T ss_pred CCcccceeEEeeeeeeCCCCHHHHHHHHHHHHHHHHHHHhccchhhhhhcCcccccc----CCCcceeEHHHHHHHHHhc
Confidence 899999999999999999459999999999999999999988888888776544321 1589999999999999988
Q ss_pred CCCCCCCCCCCcHHHHHHHHHhh
Q 013865 411 GVEIDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 411 g~~~~~~~dl~te~E~~L~~~vk 433 (435)
| ++.|++|+++++|++|++.+.
T Consensus 283 ~-~~~~~~dl~~~~e~~l~~~~~ 304 (422)
T 1n9w_A 283 L-GYPVGQDLSEEAERLLGEYAK 304 (422)
T ss_dssp S-CCCCCSSCCHHHHHHHHHHHH
T ss_pred C-CcccccccCcHHHHHHHHHHH
Confidence 8 778899999999999999885
|
| >3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-67 Score=552.95 Aligned_cols=296 Identities=20% Similarity=0.323 Sum_probs=249.0
Q ss_pred CCCCCCcccccccCcceE-EeccccC-C--CCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH
Q 013865 76 NDPQTGKWSEAVNGREWT-VVGALNG-S--LKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~~~-~i~~l~~-~--~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~ 151 (435)
.+||||+|.++++..+.. ...++.. . ..|++|+|+|||+++|.+| |++|++|||+++.||||++.+ .++++++
T Consensus 24 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~v~Gwv~~~R~~g-k~~F~~LrD~sg~iQvv~~~~--~~~~~~~ 100 (493)
T 3a74_A 24 VDPFGKRFERTHKAEELFELYGDLSKEELEEQQIEVAVAGRIMTKRGMG-KAGFAHIQDVTGQIQIYVRQD--DVGEQQY 100 (493)
T ss_dssp CCTTCCCCCCSCCHHHHHHHHTTSCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEEHH--HHHHHHH
T ss_pred CCCCCCCCcCceehHHHHHhhccccchhhccCCCEEEEEEEEEEEecCC-CcEEEEEEECCEeEEEEEECC--cCCHHHH
Confidence 489999999886654321 1222211 0 1288999999999999999 899999999999999999753 2345667
Q ss_pred HHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccc
Q 013865 152 RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDT 230 (435)
Q Consensus 152 k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~et 230 (435)
+.++.|+.||+|.|+|+|..++ +|++||++++|.||++| .+||.... +.+++++
T Consensus 101 ~~~~~l~~g~~v~V~G~v~~~~------~ge~ei~~~~i~vl~~~~~plP~k~~-------------------~~~~~e~ 155 (493)
T 3a74_A 101 ELFKISDLGDIVGVRGTMFKTK------VGELSIKVSSYEFLTKALRPLPEKYH-------------------GLKDIEQ 155 (493)
T ss_dssp HHHHHCCTTCEEEEEEEEEECT------TCCEEEEEEEEEEEECCSSCCCCC------------------------CHHH
T ss_pred HHHhcCCCCCEEEEEEEEEeCC------CCcEEEEEEEEEEcccccCCCCcccc-------------------CCCCHhh
Confidence 7778999999999999998753 47899999999999999 89995421 2367899
Q ss_pred cccccccccc-cHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChHHHHh
Q 013865 231 RLNNRVIDIR-TLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQLHKQ 307 (435)
Q Consensus 231 rl~~R~Ldlr-~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spql~lq 307 (435)
|+++|||||| ++.++++|++||.|+++||+||.++||+||+||+|+++.+++++++|.+ ++||+++||+||||||+|
T Consensus 156 r~r~RyldL~~~~~~~~~~r~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~~~~~~~~~yLr~SpqLylk 235 (493)
T 3a74_A 156 RYRQRYLDLIMNPESKKTFITRSLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITHHNALDMTLYMRIAIELHLK 235 (493)
T ss_dssp HHHTHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEEETTTTEEEEECSCSHHHHH
T ss_pred hhhcchhhhhcCHHHHHHHHHHHHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEecccCCCceeEEecCHHHHHH
Confidence 9999999996 7999999999999999999999999999999999996644445679988 789999999999999999
Q ss_pred hhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCc
Q 013865 308 MSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFE 387 (435)
Q Consensus 308 ~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~ 387 (435)
+++++|++|||+||||||||+++ .||||||||||+||+|++ |+|+|+++|+||+++++.+.++|. +. +...
T Consensus 236 ~l~v~G~~rVyeig~~FR~E~~~-~rH~pEFT~lE~e~af~d-~~dlm~l~E~ll~~l~~~v~~~~~--i~-----~~~~ 306 (493)
T 3a74_A 236 RLIVGGLEKVYEIGRVFRNEGIS-TRHNPEFTMLELYEAYAD-FRDIMKLTENLIAHIATEVLGTTK--IQ-----YGEH 306 (493)
T ss_dssp HHHHTTCCEEEEEEEEECCCCCB-TTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHSCSE--EE-----ETTE
T ss_pred HHhhcccCceEEECccccCCCCC-cccCCceeEEEEEecCCC-HHHHHHHHHHHHHHHHHHHhCCce--Ee-----eCCE
Confidence 99999999999999999999985 499999999999999996 999999999999999999987763 22 1222
Q ss_pred ccCCCCCCceeeHHHHHHHHH
Q 013865 388 PLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 388 ~~~~~~p~~rit~~eai~lL~ 408 (435)
.+++..||+||||.||++.+.
T Consensus 307 ~i~~~~pf~rity~eai~~~~ 327 (493)
T 3a74_A 307 LVDLTPEWRRLHMVDAIKEYV 327 (493)
T ss_dssp EEECCSSCEEEEHHHHHHHHT
T ss_pred eeccCCCcceeeHHHHHHHHh
Confidence 355667999999999998654
|
| >1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-64 Score=534.37 Aligned_cols=278 Identities=28% Similarity=0.423 Sum_probs=237.5
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.+++|...+.|++|+|+|||+++|.+| +++|++|||+++.||||++.+. + ++++++.|+.||+|.|+|+|..+
T Consensus 5 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~~----~-~~~~~~~l~~e~~V~V~G~v~~~ 78 (580)
T 1l0w_A 5 HYAGSLRETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPAS----P-AYATAERVRPEWVVRAKGLVRLR 78 (580)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTS----T-THHHHTTCCTTCEEEEEEEEEEC
T ss_pred EEHHHhHHHhCCCEEEEEEEEEEEecCC-CeEEEEEEECCeeEEEEEeCCh----h-HHHHHhcCCCCcEEEEEEEEEcC
Confidence 4567787778899999999999999999 8999999999999999997532 2 56778899999999999999876
Q ss_pred CcccCC-CceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHH
Q 013865 173 DVEIKG-ATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 251 (435)
Q Consensus 173 ~~~~~~-~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~r 251 (435)
+..... .+|++||++++|.|||+|.++|+.+.+..++ .....++.++||+|||||||++.++++|++|
T Consensus 79 ~~~~~~~~~ge~Ei~~~~i~vl~~a~~lP~~i~~~~~~-----------~~~~~~~~e~Rl~~RyLdLR~~~~~~~l~~R 147 (580)
T 1l0w_A 79 PEPNPRLATGRVEVELSALEVLAEAKTPPFPVDAGWRG-----------EEEKEASEELRLKYRYLDLRRRRMQENLRLR 147 (580)
T ss_dssp SSCCTTSTTTTEEEEEEEEEEEECCCCCSSCCSSGGGT-----------CCCCCCCHHHHHHTHHHHTTSHHHHHHHHHH
T ss_pred CCcCccCCCccEEEEEeEEEEeccCcCCCCCcchhccc-----------cccccCCHHHhhhhhHHHhcCHHHHHHHHHH
Confidence 422222 4688999999999999996677776553221 0123478999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEecc--CCCce-eeccChHHHHhhhccCCCceeEEEecceecCC
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSA-CLAQSPQLHKQMSICGDFGRVFETGPVFRAED 328 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~-~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~ 328 (435)
|.|+++||+||.++||+||+||+|+++++|| |.+|.|.+ ++..+ ||+||||||||+||++|++||||||||||||+
T Consensus 148 s~i~~~iR~fl~~~gF~EVeTPiL~~s~~eG-Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~E~ 226 (580)
T 1l0w_A 148 HRVIKAIWDFLDREGFVQVETPFLTKSTPEG-ARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRYFQIARCFRDED 226 (580)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSSBCCCSSS-SCCCEEECTTSTTEEEECCSCSHHHHHHHHHTTCSEEEEEEEEECCCC
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEecCCCCC-CCCccccccccCCceeECccCHHHHHHHHHHhccCCeEEEeceeeCCC
Confidence 9999999999999999999999999877775 67798854 44444 59999999999999999999999999999999
Q ss_pred CCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHH
Q 013865 329 SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQML 407 (435)
Q Consensus 329 s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~lL 407 (435)
+++.|| ||||||||||+|.+ |+|+|+++|+||+++++.+.+ .++..||+||||.||++.+
T Consensus 227 ~~~~r~-pEFT~lE~e~af~d-~~dvm~~~E~li~~i~~~v~~-----------------~~~~~pf~rity~eA~~~~ 286 (580)
T 1l0w_A 227 LRADRQ-PDFTQLDLEMSFVE-VEDVLELNERLMAHVFREALG-----------------VELPLPFPRLSYEEAMERY 286 (580)
T ss_dssp CCSSCC-SEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHTC-----------------CCCCSSCCEEEHHHHHHHH
T ss_pred CCCCcC-CCccceeeeecCCC-HHHHHHHHHHHHHHHHHHHhC-----------------CccCCCccEEEHHHHHHHh
Confidence 977666 59999999999996 999999999999999998753 1233589999999999865
|
| >1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-62 Score=524.11 Aligned_cols=270 Identities=27% Similarity=0.409 Sum_probs=233.4
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.+++|...+.|++|+|+|||+++|.+| +++|++|||+++.||||++.+ ..+++++++.|+.||+|.|+|+|..+
T Consensus 4 ~~~~~l~~~~~g~~V~l~GwV~~~R~~G-~~~Fi~LrD~~g~iQvv~~~~----~~~~~~~~~~l~~e~~V~V~G~v~~~ 78 (585)
T 1c0a_A 4 EYCGQLRLSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPD----RADALKLASELRNEFCIQVTGTVRAR 78 (585)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGG----GHHHHHHHTTCCTTCEEEEEEEEEEC
T ss_pred eEHHHHHHHhCCCEEEEEEEEEEEecCC-CcEEEEEEECCeeEEEEEeCC----chHHHHHHhcCCCCCEEEEEeEEEcc
Confidence 3567777778899999999999999999 899999999999999999753 25677888899999999999999875
Q ss_pred Ccc---cCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 173 DVE---IKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~~~---~~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
+.. .+..+|++||++++|.|||+|.++|+.+.+ .++.++||+|||||||++.++++|+
T Consensus 79 ~~~~~n~~~~~geiEl~~~~i~vl~~a~~lP~~~~~-------------------~~~~e~Rl~~R~LdLR~~~~~~~l~ 139 (585)
T 1c0a_A 79 DEKNINRDMATGEIEVLASSLTIINRADVLPLDSNH-------------------VNTEEARLKYRYLDLRRPEMAQRLK 139 (585)
T ss_dssp CTTTCCTTSTTTTEEEEEEEEEEEECCCSCSSCTTS-------------------CCCHHHHHHTHHHHTTSHHHHHHHH
T ss_pred CcccccccCCCccEEEEEeEEEEEeccCCCCCCccc-------------------cCCHhHhhhchHhhhcCHHHHHHHH
Confidence 432 122468899999999999999667876543 2678999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEecc--C-CCceeeccChHHHHhhhccCCCceeEEEecceec
Q 013865 250 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDY--K-GQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (435)
Q Consensus 250 ~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~--~-~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~ 326 (435)
+||.|+++||+||+++||+||+||+|+++++|| |.+|.|.+ + +..+||+||||||||+||++|++|||||||||||
T Consensus 140 ~Rs~i~~~iR~fl~~~gFlEVeTPiL~~s~~eG-Ar~F~v~~~~~~~~~y~L~qSPQl~kq~Lmv~G~~rvfqI~~~FR~ 218 (585)
T 1c0a_A 140 TRAKITSLVRRFMDDHGFLDIETPMLTKATPEG-ARDYLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRD 218 (585)
T ss_dssp HHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSS-SCCCEEECSSSTTCEEECCSCSHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCcEEEeCCEEecCCCCC-CccceecccccCCceEeCccCHHHHHHHHHhcCCCceEEEeceeec
Confidence 999999999999999999999999999887775 66798853 4 4445699999999999999999999999999999
Q ss_pred CCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHH
Q 013865 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 406 (435)
Q Consensus 327 E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~l 406 (435)
|++++.|| ||||||||||+|++ |+|+|+++|+||+++++.+.+. ++.. |+||||.||++.
T Consensus 219 E~~~t~r~-pEFT~lE~e~af~d-~~dvm~~~E~li~~i~~~v~~~-----------------~~~~-f~r~ty~ea~~~ 278 (585)
T 1c0a_A 219 EDLRADRQ-PEFTQIDVETSFMT-APQVREVMEALVRHLWLEVKGV-----------------DLGD-FPVMTFAEAERR 278 (585)
T ss_dssp CCCBTTBC-SEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHSC-----------------CCCS-CCEEEHHHHHHH
T ss_pred CCCCCCcC-cccceeeeeecCCC-HHHHHHHHHHHHHHHHHHHhCC-----------------Cccc-cceeeHHHHHHH
Confidence 99977666 59999999999996 9999999999999999987532 1122 899999999974
Q ss_pred H
Q 013865 407 L 407 (435)
Q Consensus 407 L 407 (435)
+
T Consensus 279 ~ 279 (585)
T 1c0a_A 279 Y 279 (585)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-60 Score=507.77 Aligned_cols=274 Identities=26% Similarity=0.375 Sum_probs=238.0
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.+++|...+.|++|+|+|||+++|.+ +|++|||+++.||||++.+ ..+++++++++.|+.||+|.|+|+|...
T Consensus 13 ~~~~~l~~~~~g~~V~l~GwV~~~R~~----~Fi~LrD~~g~iQvv~~~~--~~~~~~~~~~~~l~~e~~V~V~G~v~~~ 86 (617)
T 4ah6_A 13 NTCGELRSSHLGQEVTLCGWIQYRRQN----TFLVLRDFDGLVQVIIPQD--ESAASVKKILCEAPVESVVQVSGTVISR 86 (617)
T ss_dssp SCGGGCCGGGTTCEEEEEEEECCCCTT----TEEEEECSSCEEEEECCCS--SSSHHHHHHHHHCCSSCEEEEEEEEEEC
T ss_pred eEHHHhHHHhCCCEEEEEEEeeeecCe----EEEEEEeCCcCEEEEEeCC--cCcHHHHHHHhcCCCCCEEEEEEEEEeC
Confidence 567888888899999999999999963 4999999999999999854 2356788899999999999999999864
Q ss_pred Cc---ccCCCceeEEEEEeEEEEeecCCCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHH
Q 013865 173 DV---EIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR 249 (435)
Q Consensus 173 ~~---~~~~~t~~lEi~v~~i~vls~~~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~ 249 (435)
+. ..+..+|++||++++|.||++|.+||++++++. .++.++||+|||||||++..+++|+
T Consensus 87 ~~~~~n~~~~tgeiEl~~~~i~vL~~a~~lP~~~~~~~-----------------~~~ee~Rl~~R~LdLR~~~~~~~lr 149 (617)
T 4ah6_A 87 PAGQENPKMPTGEIEIKVKTAELLNACKKLPFEIKNFV-----------------KKTEALRLQYRYLDLRSFQMQYNLR 149 (617)
T ss_dssp STTCCCTTSTTTTEEEEEEEEEEEECBCCCSSCTTTTC-----------------CSCHHHHHHTHHHHTTSHHHHHHHH
T ss_pred CccccCccCCCCcEEEEEeEEEEeecCCCCCccccccc-----------------ccChhhhccceeeeecchHHHHHHH
Confidence 32 123456899999999999999988999876532 2578999999999999999999999
Q ss_pred HHHHHHHHHHHHhh-cCCeEEeeCceeeccCCCCCcceeEecc--CCCceeeccChHHHHhhhccCCCceeEEEecceec
Q 013865 250 IQSQVGNIFRQFLL-SENFVEIHTPKLIAGSSEGGSAVFRLDY--KGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRA 326 (435)
Q Consensus 250 ~rs~i~~~~r~fl~-~~gF~EV~TP~l~~~~~egga~~F~v~~--~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~ 326 (435)
+||.|+++||+||. ++||+||+||+|+++. .+||.+|.+.+ +|..+||+||||||||+|+++|++|||+|||||||
T Consensus 150 ~Rs~i~~~iR~f~~~~~gF~EVeTPiL~~st-~~GA~~F~v~~~~~g~~~~L~qSpql~kq~l~v~g~~rvfqi~~~FR~ 228 (617)
T 4ah6_A 150 LRSQMVMKMREYLCNLHGFVDIETPTLFKRT-PGGAKEFLVPSREPGKFYSLPQSPQQFKQLLMVGGLDRYFQVARCYRD 228 (617)
T ss_dssp HHHHHHHHHHHHHHTTSCCEECCCCSSBCCC-CSSSCCCEEECSSTTCEEECCSSTTHHHHHHHHTSCSEEEEEEEEECC
T ss_pred HHHHHHHHHHHHHHhcCCeEEEeCCeeccCC-CCCCcCceeccccCCcccccccCHHHHHHHHHhcccCcEEEEEhheec
Confidence 99999999999996 7999999999999764 45678899876 68999999999999999999999999999999999
Q ss_pred CCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHH
Q 013865 327 EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQM 406 (435)
Q Consensus 327 E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eai~l 406 (435)
|++++ +|+||||||||||+|.+ ++|+|+++|+||+++++.+. .++..||+||||.||+.
T Consensus 229 E~~~t-~r~pEFt~lE~e~af~d-~~d~m~~~E~l~~~~~~~~~------------------~~~~~pf~r~ty~eA~~- 287 (617)
T 4ah6_A 229 EGSRP-DRQPEFTQIDIEMSFVD-QTGIQSLIEGLLQYSWPNDK------------------DPVVVPFPTMTFAEVLA- 287 (617)
T ss_dssp CSSCS-SSCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHSCSSS------------------CCCCSSCCEEEHHHHHH-
T ss_pred ccCCC-CcCcceecceeeecCCC-HHHHHHHHHHHHHHHHHHhc------------------CccCCCceEeEHHHHHH-
Confidence 99865 56999999999999996 99999999999999987542 12346899999999996
Q ss_pred HHHcCCC
Q 013865 407 LKDAGVE 413 (435)
Q Consensus 407 L~~~g~~ 413 (435)
..|.+
T Consensus 288 --~ygsD 292 (617)
T 4ah6_A 288 --TYGTD 292 (617)
T ss_dssp --HTSSS
T ss_pred --HHcCC
Confidence 55543
|
| >3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-42 Score=346.03 Aligned_cols=170 Identities=19% Similarity=0.211 Sum_probs=140.0
Q ss_pred ccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCC-CCcceeEeccCC------CceeeccChHHHHhhhc
Q 013865 238 DIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE-GGSAVFRLDYKG------QSACLAQSPQLHKQMSI 310 (435)
Q Consensus 238 dlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~e-gga~~F~v~~~~------~~~~L~~Spql~lq~~i 310 (435)
..|++ ++++|++||.|+++||+||.++||+||+||+|++++++ +++.+|.++||+ .++||+||||||||+++
T Consensus 27 ~~~~~-~~~~lr~Rs~i~~~iR~ff~~~gF~EVeTPiL~~~~~~~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~ 105 (345)
T 3a5y_A 27 WQPSA-SIPNLLKRAAIMAEIRRFFADRGVLEVETPCMSQATVTDIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLL 105 (345)
T ss_dssp TSCSS-CHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSCCCCTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHH
T ss_pred cCCch-HHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEecCCCCCccceEEEEecCcccccCCCEeecCCHHHHHHHHH
Confidence 34555 88999999999999999999999999999999987765 467899999997 78999999999999999
Q ss_pred cCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccC
Q 013865 311 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLK 390 (435)
Q Consensus 311 ~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~ 390 (435)
++|++||||||||||||++ |.||+||||||||||+|.+ |+|+|+++|+||+++++.
T Consensus 106 ~~g~~rvyqIg~~FR~E~~-~~rH~pEFt~lE~e~af~d-~~d~m~~~E~li~~v~~~---------------------- 161 (345)
T 3a5y_A 106 VAGCGPVFQLCRSFRNEEM-GRYHNPEFTMLEWYRPHYD-MYRLMNEVDDLLQQVLDC---------------------- 161 (345)
T ss_dssp HTTCCSEEEEEEEECCCCC-BTTBCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHCC----------------------
T ss_pred HcCCCcEEEEEcceeCCCC-cccccchhheeeeeeeCCC-HHHHHHHHHHHHHHHHcC----------------------
Confidence 9999999999999999998 9999999999999999996 999999999999999861
Q ss_pred CCCCCceeeHHHHHHH-----------------HHHcCCC-CCCC-CCCCcHHHHHHHHHhhc
Q 013865 391 YKPKTLRLTFEEGVQM-----------------LKDAGVE-IDPL-GDLNTESERKLGQLVLE 434 (435)
Q Consensus 391 ~~~p~~rit~~eai~l-----------------L~~~g~~-~~~~-~dl~te~E~~L~~~vke 434 (435)
.||+||||.||++. +++.|+. +.++ +|+.+..|+.|+++|.+
T Consensus 162 --~~~~rity~ea~~~~~g~d~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~e~~l~~~ve~ 222 (345)
T 3a5y_A 162 --PAAESLSYQQAFLRYLEIDPLSADKTQLREVAAKLDLSNVADTEEDRDTLLQLLFTFGVEP 222 (345)
T ss_dssp --CCCEEEEHHHHHHHHTCCCTTCCC------------------------HHHHHHHHHHTGG
T ss_pred --CCCcEeeHHHHHHHHhCCCCCCCCHHHHHHHHHHcCCcccCCCcCCHhHHHHHHHHHHHHH
Confidence 26788888888743 3444555 5555 67888999999988753
|
| >1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-37 Score=305.54 Aligned_cols=157 Identities=24% Similarity=0.335 Sum_probs=142.4
Q ss_pred cccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeecc--------CCCCCcceeEeccCCCceeeccChHH
Q 013865 233 NNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAG--------SSEGGSAVFRLDYKGQSACLAQSPQL 304 (435)
Q Consensus 233 ~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~--------~~egga~~F~v~~~~~~~~L~~Spql 304 (435)
+|||||||++ ++++|++|+.|++.+|+||.++||+||+||+|..+ .+|| +++|.++|+|+++||++|||+
T Consensus 1 ~~r~l~lr~~-~~~~~~~rs~i~~~ir~~f~~~GF~EVeTP~l~~~~~~~~~~~~~e~-a~~f~~~~~~~~~~L~~Spe~ 78 (294)
T 1nnh_A 1 MNAVEIISRE-ISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEG-MEPAEVEIYGVKMRLTHSMIL 78 (294)
T ss_dssp -CHHHHHTSC-CHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCC-CCCCEEEETTEEEEECSCSHH
T ss_pred CchHHhhhcc-hHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEEEccchhccCCCCCc-ceeEEEEcCCCCEEeccChHH
Confidence 5899999999 99999999999999999999999999999999998 7777 999999999999999999999
Q ss_pred HHhhhccCCCceeEEEecceecCC--CCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhh
Q 013865 305 HKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAK 382 (435)
Q Consensus 305 ~lq~~i~~g~~rVfeIgp~FR~E~--s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~ 382 (435)
|+|+++++|++|||+||||||+|+ +++.||+|||||||+|++|.+ ++|+|+++|+|++++++.+.+. ++.
T Consensus 79 ~~~~l~~~g~~rvf~ig~~FR~E~pq~~~~RH~~EFtqle~e~~~~~-~~~l~~~~e~l~~~l~~~~~~~-------~~~ 150 (294)
T 1nnh_A 79 HKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK-MEDIMRLIERLVYGLFRKAEEW-------TGR 150 (294)
T ss_dssp HHHHHHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHH-------HSS
T ss_pred HHHHHhhcCccceEEEEccEeCCCCCCCCCccccceeEEEEEecCCC-HHHHHHHHHHHHHHHHHHHHhh-------hcc
Confidence 999999999999999999999999 878999999999999999996 9999999999999999877542 111
Q ss_pred cCCCcccC-CCCCCceeeHHHHHH
Q 013865 383 QYPFEPLK-YKPKTLRLTFEEGVQ 405 (435)
Q Consensus 383 ~~~~~~~~-~~~p~~rit~~eai~ 405 (435)
. ++ +. +|+|+||.||++
T Consensus 151 ~-----i~~~~-~~~r~~y~ea~~ 168 (294)
T 1nnh_A 151 E-----FPKTK-RFEVFEYSEVLE 168 (294)
T ss_dssp C-----CCCCS-SCEEEEHHHHHH
T ss_pred c-----cccCC-CceEeEHHHHHH
Confidence 1 22 22 399999999995
|
| >3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.3e-25 Score=216.52 Aligned_cols=165 Identities=19% Similarity=0.273 Sum_probs=132.1
Q ss_pred CCceeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHH-----H
Q 013865 178 GATQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI-----Q 251 (435)
Q Consensus 178 ~~t~~lEi~v~~i~vls~~-~~lP~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~-----r 251 (435)
.+.|++||++++|.+|++| .+||+++++. ..|+++||||+|++..++++++ +
T Consensus 22 ~~~~~~ei~~~~~~vl~~a~~~~P~~~~~~----------------------~~~l~~r~l~~R~~~~~~i~~~g~~~~~ 79 (290)
T 3qtc_A 22 SAPALTKSQTDRLEVLLNPKDEISLNSGKP----------------------FRELESELLSRRKKDLQQIYAEERENYL 79 (290)
T ss_dssp --CCCCHHHHHHHHHHCCTTCC----CCSC----------------------HHHHHHHHHHHHHHHHHHHHHTTCCCHH
T ss_pred CCCceEEEEhhhhhhhccCCCCCCCCcchh----------------------hhhhhhHHHHhccchHHHHhccccccHH
Confidence 4458899999999999999 8999976431 2389999999999999999999 9
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccCCC------CCcceeE-eccCCCceeec--cChHHHHhhhc----cCCCceeE
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGSSE------GGSAVFR-LDYKGQSACLA--QSPQLHKQMSI----CGDFGRVF 318 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~~e------gga~~F~-v~~~~~~~~L~--~Spql~lq~~i----~~g~~rVf 318 (435)
+.+.+.+|++|..+||.||.||+|++..+. ++...+. +.+|+..++|| +||+|+.++.. .++..|+|
T Consensus 80 ~~i~~~ir~~l~~~Gf~EV~Tp~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~LR~slsp~L~~~l~~n~~~~~~p~rlf 159 (290)
T 3qtc_A 80 GKLEREITRFFVDRGFLEIKSPILIPLEYIERMGIDNDTELSKQIFRVDKNFCLRPMLTPNLYNYLRKLDRALPDPIKIF 159 (290)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCSEEETHHHHHTTCCTTSSGGGGCCEETTTEEECSCSHHHHHHHHHHHTTTSCSSEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeeHHHHHhcCCCcCCchhhhheeeCCCeeEcccChHHHHHHHHHhhccCCCCeEEE
Confidence 999999999999999999999999876431 2221222 44678899999 99999976553 25668999
Q ss_pred EEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHH
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i 365 (435)
|||+|||+|+. +.+|++||||+|+++++.+ ++.++..+++.++..+
T Consensus 160 eiG~vFR~E~~-~~~~~~Ef~ql~~~~~g~~~~f~elkg~le~ll~~l 206 (290)
T 3qtc_A 160 EIGPCYRKESD-GKEHLEEFTMLVFWQMGSGCTRENLESIITDFLNHL 206 (290)
T ss_dssp EEEEEECCCSC-SSSCCSEEEEEEEEEESTTCCHHHHHHHHHHHHHHH
T ss_pred EEcCEEecCCC-CCcCcchheEEEEEEEcCChHHHHHHHHHHHHHHHc
Confidence 99999999974 7899999999999999853 4778888888887764
|
| >2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=4.2e-10 Score=110.86 Aligned_cols=113 Identities=11% Similarity=0.120 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhcCCeEEeeCceeeccC----C--CCCc-------ceeEeccCCCceeeccChHHHHhhhccCC----
Q 013865 251 QSQVGNIFRQFLLSENFVEIHTPKLIAGS----S--EGGS-------AVFRLDYKGQSACLAQSPQLHKQMSICGD---- 313 (435)
Q Consensus 251 rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~--egga-------~~F~v~~~~~~~~L~~Spql~lq~~i~~g---- 313 (435)
.+.+.+.+|++|..+||.||.+|.+.... . -+.. ++|. .+...+||+|.-..+..+++.+
T Consensus 55 ~~~~~~~iR~~l~~~Gf~Ev~~s~l~~~~~nf~~l~~~~~~par~~~d~~~---l~e~~vLRtsl~p~ll~~l~~N~~~~ 131 (294)
T 2rhq_A 55 LTRTVEEIEDLFLGLGYEIVDGYEVEQDYYNFEALNLPKSHPARDMQDSFY---ITDEILMRTHTSPVQARTMEKRNGQG 131 (294)
T ss_dssp HHHHHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTCGGGCTTTSCB---SSSSEEECSSSHHHHHHHHHHTTTCS
T ss_pred HHHHHHHHHHHHHHCCCEEEcCcceeeehhhHHhhCCCCCccccccCCcEE---EcCcceeeccCHHHHHHHHHhcCCCC
Confidence 34578899999999999999999886421 0 0000 0232 2356788888777777777766
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHHHh
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIFD 367 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~ 367 (435)
--|+||||+|||+++. +.+|+|||+||++++++. -++.|++.+++.++..++.
T Consensus 132 ~~riFEiG~Vfr~d~~-d~~h~~Ef~~Le~~~~g~~~df~dlKg~le~ll~~l~g 185 (294)
T 2rhq_A 132 PVKIICPGKVYRRDSD-DATHSHQFTQIEGLVVDKNIKMSDLKGTLELVAKKLFG 185 (294)
T ss_dssp CEEEEEEEEEECCCCC-BTTBCSEEEEEEEEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred CccEEEEcCEEecCCC-CCCCCChhhEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 6799999999998763 567999999999999983 1489999999999998864
|
| >1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* | Back alignment and structure |
|---|
Probab=98.96 E-value=2.1e-09 Score=108.27 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=81.0
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccC-------CCC---C---cceeEecc-CC-----------Cceeec--cChHH
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS-------SEG---G---SAVFRLDY-KG-----------QSACLA--QSPQL 304 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~-------~eg---g---a~~F~v~~-~~-----------~~~~L~--~Spql 304 (435)
+.+.+.+|++|..+||.||.+|.+.... ... + .++|.+.- .. ....|| .||.+
T Consensus 104 ~~~~~~Ir~~f~~~Gf~Ev~~p~v~~~~~nfd~L~~p~~hpar~~~dt~~l~nP~s~~~~~~~~~~~~~~vLRt~tsp~l 183 (350)
T 1b7y_A 104 TLMERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQ 183 (350)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHTTTTTCCSSSTTTTSSCCCBEECSSCCCBCTTSCBCCSCEEECSSSTHHH
T ss_pred HHHHHHHHHHHHHCCCEEEECcchhcchhHHHhhCCCCCCccccccccEEEcCccccccccccccccccceeeccchHHH
Confidence 3477889999999999999999886421 100 0 22344431 11 334455 56655
Q ss_pred HHhhhccCC-C-ceeEEEecceecCCCCCCccccccccceeeeeccc-cHHHHHHHHHHHHHHHHh
Q 013865 305 HKQMSICGD-F-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK-HYSEVMDIVDRLFVTIFD 367 (435)
Q Consensus 305 ~lq~~i~~g-~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~-~~~d~m~~~e~li~~i~~ 367 (435)
. .++..+ . -|+||||+|||++.. +.+|+|||+|||+++.+.+ ++.|++..++.++..++.
T Consensus 184 l--r~l~~~~~piriFEiGrVFR~d~~-d~tH~pEF~qlegl~~g~~v~f~dLKg~le~ll~~lfG 246 (350)
T 1b7y_A 184 V--RYMVAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFG 246 (350)
T ss_dssp H--HHHHHCCSSEEEEEEEEEECCCCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHSC
T ss_pred H--HHHHhcCCCeeEEEeeeEEECCCC-CCCCCChhHEEEEEEECCCCCHHHHHHHHHHHHHhhcC
Confidence 5 344432 3 489999999999874 6789999999999998851 489999999999998865
|
| >12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=5.5e-08 Score=95.35 Aligned_cols=154 Identities=12% Similarity=0.193 Sum_probs=116.6
Q ss_pred HHHHHHHHHHHHHHhh-----cCCeEEeeCceeeccCCC-----CC-cceeEeccC---CCceeeccChHHHHhhhccC-
Q 013865 248 FRIQSQVGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GG-SAVFRLDYK---GQSACLAQSPQLHKQMSICG- 312 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~-----~~gF~EV~TP~l~~~~~e-----gg-a~~F~v~~~---~~~~~L~~Spql~lq~~i~~- 312 (435)
++-....+.++++||. +.||++|..|++....+. .| ..|-.+++. |..+-+.+|--.||++++..
T Consensus 5 ~~~tq~aI~~iK~~f~~~l~~~L~L~rVsaPlfv~~~~GlnD~LnG~ErpV~f~i~~~~~~~~eivhSLaKWKR~aL~~y 84 (330)
T 12as_A 5 YIAKQRQISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQH 84 (330)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcEEecCCEEecCCCCCCCCCCCceecceEecccCCCceEEEeeeHHHHHHHHHHhC
Confidence 4456678889999999 899999999999864321 13 234444433 78899999999999999864
Q ss_pred CC---ceeEEEecceecCCC-CCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcc
Q 013865 313 DF---GRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEP 388 (435)
Q Consensus 313 g~---~rVfeIgp~FR~E~s-~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~ 388 (435)
|| +++|+-.++.|.+.. -+++|.-+|+|.|||..+.. .+..|++++++++.|+..+...- ..+...|...+
T Consensus 85 ~f~~geGlytdMnaIR~dee~ld~~HS~yvDQwDWE~vi~~-~~R~~~~Lk~tV~~Iy~~ik~tE----~~~~~~y~l~p 159 (330)
T 12as_A 85 DFSAGEGLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGD-GERQFSTLKSTVEAIWAGIKATE----AAVSEEFGLAP 159 (330)
T ss_dssp TCCTTCEEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCT-TCCSHHHHHHHHHHHHHHHHHHH----HHHHHHSCCCC
T ss_pred CCCCCCeeEecCcccccCcccCCCceeEEEeeeeeEEeccc-cchHHHHHHHHHHHHHHHHHHHH----HHHHHHhccCc
Confidence 58 999999999997654 68999999999999999976 57889999999888887765321 12344452211
Q ss_pred cCCCCCCceeeHHHHHHHH
Q 013865 389 LKYKPKTLRLTFEEGVQML 407 (435)
Q Consensus 389 ~~~~~p~~rit~~eai~lL 407 (435)
. +..++..||..|..+++
T Consensus 160 ~-Lp~~i~fitsqeL~~~Y 177 (330)
T 12as_A 160 F-LPDQIHFVHSQELLSRY 177 (330)
T ss_dssp C-SCSSCEEEEHHHHHHHS
T ss_pred C-CCCceEEEeHHHHHHHc
Confidence 1 45688999999988753
|
| >3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A | Back alignment and structure |
|---|
Probab=98.77 E-value=7.5e-09 Score=101.66 Aligned_cols=112 Identities=22% Similarity=0.343 Sum_probs=79.8
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccC---CCCC-c--ceeE-eccCCCceeecc--ChHHHH--hhhccCCCc---ee
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG-S--AVFR-LDYKGQSACLAQ--SPQLHK--QMSICGDFG---RV 317 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~---~egg-a--~~F~-v~~~~~~~~L~~--Spql~l--q~~i~~g~~---rV 317 (435)
..+.+.+|++|...||.||.||.|.... ..|. . +.|. +++.+..++||. +|.+.. ... ...-+ |+
T Consensus 74 ~~l~~~ir~~~~~~Gf~EV~tP~Le~~~l~~~~g~~~~~~m~~~~npl~e~~~LRp~l~p~l~~~~r~~-~~~~~~Plrl 152 (288)
T 3dsq_A 74 LELEEKLAKALHQQGFVQVVTPTIITKSALAKMTIGEDHPLFSQVFWLDGKKCLRPMLAPNLYTLWREL-ERLWDKPIRI 152 (288)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEEEHHHHHTTSSCC--CCTTTSCEEETTEEECSCSHHHHHHHHHHH-TTTSCSCEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecHHHHhhcCCCcccccEEeecccccchhhhhcChHHHHHHHHHH-HhCCCCCEEE
Confidence 5789999999999999999999998533 1111 1 2232 123446789994 566552 211 12233 99
Q ss_pred EEEecceecCCCCCCccccccccceeeeeccc---cHHHHHHHHHHHHHHH
Q 013865 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKK---HYSEVMDIVDRLFVTI 365 (435)
Q Consensus 318 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~---~~~d~m~~~e~li~~i 365 (435)
|+||+|||+|.. +..|++||+|+|+++.... ++.++..+++.++..+
T Consensus 153 feiG~vFR~E~~-~~~r~~EF~qle~~i~g~~~~~~f~elkg~le~ll~~L 202 (288)
T 3dsq_A 153 FEIGTCYRKESQ-GAQHLNEFTMLNLTELGTPLEERHQRLEDMARWVLEAA 202 (288)
T ss_dssp EEEEEEECSCCS-SSCCCSEEEEEEEEEETCCGGGHHHHHHHHHHHHHHHH
T ss_pred EEEeeEEecCCC-CCCcCccEEEEEEEEEcCCchhhHHHHHHHHHHHHHHc
Confidence 999999999986 6789999999999987641 2677888888887766
|
| >2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.26 E-value=3.3e-06 Score=87.15 Aligned_cols=114 Identities=12% Similarity=0.186 Sum_probs=75.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----C----CCCcceeEeccCCCceeeccChH-----HHHhhhccC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S----EGGSAVFRLDYKGQSACLAQSPQ-----LHKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~----egga~~F~v~~~~~~~~L~~Spq-----l~lq~~i~~ 312 (435)
.-.+++..|.+++++++...||.||.||.|.... + ..+.+.|.+. +..+||+-..+ +|....+..
T Consensus 170 ~ga~l~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--~~~l~LrPt~e~~i~~~~~~~i~s~ 247 (425)
T 2dq3_A 170 WGARLERALINFMLDLHTKKGYKEICPPHLVKPEILIGTGQLPKFEEDLYKCE--RDNLYLIPTAEVPLTNLYREEILKE 247 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHSCTTTTGGGSCBCT--TTCCEECSSTHHHHHGGGTTEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCCCcChhhheEec--CCeEEEcCCCcHHHHHHHHhhcccc
Confidence 4567789999999999999999999999998643 1 1122355543 67889985443 444443332
Q ss_pred -CC-ceeEEEecceecCCCCCC------ccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 313 -DF-GRVFETGPVFRAEDSYTH------RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s~t~------rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
.+ -|+|++|+|||+|.+... --..||+|+|++.-.. -++..+..++++.
T Consensus 248 ~~LPlrl~~~g~~FR~E~~~~Gr~~~Gl~R~reF~q~E~~~f~~--pe~s~~~~~e~i~ 304 (425)
T 2dq3_A 248 ENLPIYLTAYTPCYRREAGAYGKDIRGIIRQHQFDKVELVKIVH--PDTSYDELEKLVK 304 (425)
T ss_dssp TTCCEEEEEEEEEECCCCSCCSSSCSSSSSCSEEEEEEEEEEEC--GGGHHHHHHHHHH
T ss_pred ccCCeEEEEecCEecCCCCcccccccCcccccceEEeeEEEECC--HHHHHHHHHHHHH
Confidence 23 499999999999985311 1345999999976432 2334444444443
|
| >1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* | Back alignment and structure |
|---|
Probab=98.24 E-value=2e-06 Score=87.73 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----CcceeEeccCCCceeeccChHH-----HHhhhccC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQL-----HKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~Spql-----~lq~~i~~ 312 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... -| +.+.|.++--+..++|+-...- |.+.+...
T Consensus 28 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~em~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s~ 107 (401)
T 1evl_A 28 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSY 107 (401)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSGGGCCEEEETTEEEEECSCSHHHHHHHHTSSCCBG
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHHhcCcHhhhchhhEeEecCCceEEEcCCCCHHHHHHHHhhhhhh
Confidence 45677889999999999999999999999986430 01 2246665556788999966543 33322111
Q ss_pred -CC-ceeEEEecceecCCCCCCc----cccccccceeeeeccccHHHHHH
Q 013865 313 -DF-GRVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIKKHYSEVMD 356 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s~t~r----Hl~EFt~lE~e~a~~~~~~d~m~ 356 (435)
.+ -|+|+||+|||+|.+ +++ -..||+|+|+|. |.+ ..++..
T Consensus 108 ~~lP~r~~~~g~~fR~E~~-~p~~Gl~R~reF~q~d~~~-f~~-~~~~~~ 154 (401)
T 1evl_A 108 RDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCT-EEQIRD 154 (401)
T ss_dssp GGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EEC-GGGHHH
T ss_pred hhCChhhccccceecCCCC-cccccccccCcEEecceEE-eCC-HHHHHH
Confidence 22 499999999999985 223 357999999994 553 344433
|
| >1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.24 E-value=1.4e-06 Score=89.12 Aligned_cols=118 Identities=18% Similarity=0.248 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----CCCC------cceeEe-ccCCCceeeccCh--H---HHHhhh
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGG------SAVFRL-DYKGQSACLAQSP--Q---LHKQMS 309 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~egg------a~~F~v-~~~~~~~~L~~Sp--q---l~lq~~ 309 (435)
.-.+++..|.+.+|+.|...||.||.||+|.... +-|| .+.|.+ +--|+.++|+--. . +|....
T Consensus 14 ~~~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~g~~~~~~~~~m~~~~D~~g~~~~Lrp~~t~~~~r~~~~~~ 93 (420)
T 1qe0_A 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHK 93 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEccCcccchHHHhhhccCCccchhhhheEEEEcCCCCEEEeCCCChHHHHHHHHhcc
Confidence 3567788999999999999999999999998643 1112 135655 3346778887332 2 222222
Q ss_pred cc--CCC-ceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 310 IC--GDF-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 310 i~--~g~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
.. ..+ -|+|+||+|||+|.+. .-+.-||+|+|+|.-..++. .+++.++.+++..
T Consensus 94 ~~~~~~lP~r~~~~g~vfR~E~~~-~gR~reF~q~~~e~~~~~~~~~d~e~i~~~~~~l~~ 153 (420)
T 1qe0_A 94 MQGNPNQPIKLYYNGPMFRYERKQ-KGRYRQFNQFGVEAIGAENPSVDAEVLAMVMHIYQS 153 (420)
T ss_dssp GGGCSSCSEEEEEEEEEECC--------CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCeEEEEecCEeecCCCc-CCCcccEEEeeEEEECCCCchhHHHHHHHHHHHHHH
Confidence 22 122 5999999999999753 34678999999998776533 3566666666654
|
| >3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.22 E-value=1.8e-06 Score=85.95 Aligned_cols=110 Identities=12% Similarity=0.174 Sum_probs=76.5
Q ss_pred HHHHHHHHhhcCCeEEeeCceeeccC--------CCCC-cc-eeEeccCCCceeec--cChHHHHhhhccCCCc--eeEE
Q 013865 254 VGNIFRQFLLSENFVEIHTPKLIAGS--------SEGG-SA-VFRLDYKGQSACLA--QSPQLHKQMSICGDFG--RVFE 319 (435)
Q Consensus 254 i~~~~r~fl~~~gF~EV~TP~l~~~~--------~egg-a~-~F~v~~~~~~~~L~--~Spql~lq~~i~~g~~--rVfe 319 (435)
+.+.+|++|...||.|+.+|.+.... .+.+ +. .-.+-|.+....|| .||.+- + .+..+-. |+|+
T Consensus 112 ~~~~Ir~if~~~Gf~ev~~~~ve~~~~nFd~Ln~p~dhpaR~~~dt~~i~e~~vLRThtsp~~l-r-~l~~~~~pirife 189 (327)
T 3pco_A 112 TIDRIESFFGELGFTVATGPEIEDDYHNFDALNIPGHHPARADHDTFWFDTTRLLRTQTSGVQI-R-TMKAQQPPIRIIA 189 (327)
T ss_dssp HHHHHHHHHHTTTCBCCCCCSEECTCCCCCTTTCCSSSHHHHHTTCCBSSSSCEECSCTHHHHH-H-HHTTCCSSCCBCC
T ss_pred HHHHHHHHHHHCCCeEEECCCccCCHHHHHhhCCCCCChhhcccccEEeCCCceecccCCHHHH-H-HHHhCCCCeeEEe
Confidence 67889999999999999999885321 0111 00 00012334556676 456552 2 3343333 9999
Q ss_pred EecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHHHh
Q 013865 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIFD 367 (435)
Q Consensus 320 Igp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~ 367 (435)
+|+|||++ .+.+|+|+|+|+|..+... -++.|+..+++.++..+|.
T Consensus 190 iGrVyR~d--~d~th~p~fhqlegl~v~~~v~f~dLKg~Le~~l~~lfg 236 (327)
T 3pco_A 190 PGRVYRND--YDQTHTPMFHQMEGLIVDTNISFTNLKGTLHDFLRNFFE 236 (327)
T ss_dssp EECCBCSC--CBTTBCSBCCEEEEEEEETTCCHHHHHHHHHHHHHHHHC
T ss_pred eccEEecC--CCcccCCcccEEEEEEECCCCCHHHHHHHHHHHHHHHhC
Confidence 99999997 3789999999999876532 1488999999999999975
|
| >2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=5.8e-06 Score=85.97 Aligned_cols=104 Identities=15% Similarity=0.109 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----CC----CCcceeEe-ccCCCceeeccC-----hHHHHhhhcc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SE----GGSAVFRL-DYKGQSACLAQS-----PQLHKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~e----gga~~F~v-~~~~~~~~L~~S-----pql~lq~~i~ 311 (435)
.-.+++..|.+.+|+.|...||.||.||+|.... +. -+.+.|.+ +--|+.++|+.. +.++...+..
T Consensus 65 ~g~~~~~~i~~~ir~~~~~~G~~ei~tP~l~~~el~~~sg~~d~~~~em~~~~d~~~~~~~LrPt~ee~t~~i~r~~~~s 144 (458)
T 2i4l_A 65 LGHRVLKKIEQIVREEQNRAGAIELLMPTLQLADLWRESGRYDAYGPEMLRIADRHKRELLYGPTNEEMITEIFRAYIKS 144 (458)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTHHHHSCTTSEEEECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEEcCccCcHHHHHhcCCccccccceEEEEeCCCCeEEECCCChHHHHHHHHHHHhh
Confidence 5677888999999999999999999999998643 11 12345665 345788999863 2444443221
Q ss_pred C-CC-ceeEEEecceecCCCCCC--ccccccccceeeeeccc
Q 013865 312 G-DF-GRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKK 349 (435)
Q Consensus 312 ~-g~-~rVfeIgp~FR~E~s~t~--rHl~EFt~lE~e~a~~~ 349 (435)
. .+ -|+|+||+|||+|-+... --..||+|+|+|.-..+
T Consensus 145 ~~~lP~rl~~ig~~fR~E~~p~~Gl~R~REF~q~d~~~f~~~ 186 (458)
T 2i4l_A 145 YKSLPLNLYHIQWKFRDEQRPRFGVMRGREFLMKDAYSFDVD 186 (458)
T ss_dssp GGGCSEEEEEEEEEECCCSSCBTGGGBCSEEEEEEEEEEESS
T ss_pred ccccCeeeEEecCEeeCCCCCCCCcccccceEEeEEEEEECC
Confidence 1 12 499999999999942111 14589999999987654
|
| >1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=5.3e-06 Score=83.23 Aligned_cols=117 Identities=17% Similarity=0.206 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC------C----CCcceeEe-ccCCCceeecc--ChHHHHhhhcc-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------E----GGSAVFRL-DYKGQSACLAQ--SPQLHKQMSIC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~------e----gga~~F~v-~~~~~~~~L~~--Spql~lq~~i~- 311 (435)
.-.+++..|.+.+|+.|...||.||.||++..... . .+.+.|++ +--|+.+.||- .|.+..-.+-.
T Consensus 34 ~~~~~~~~i~~~i~~~~~~~Gy~eI~tP~le~~el~~~s~~g~~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~ 113 (344)
T 1z7m_A 34 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQIK 113 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEecCcccCcHHHHhhccCCccccccccEEEEECCCCCEEecCCCCcHHHHHHHHhcC
Confidence 34567788999999999999999999999875321 1 12346765 44677888873 23322221111
Q ss_pred -CCCceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHH
Q 013865 312 -GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFV 363 (435)
Q Consensus 312 -~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~ 363 (435)
..--|.|+||+|||+|.+. .-+.-||+|+++|.-..++. -+++.++.+++.
T Consensus 114 ~~~P~rl~y~g~vfR~e~p~-~gR~REF~Q~g~ei~g~~~~~aDaEvi~l~~~~l~ 168 (344)
T 1z7m_A 114 DSTSARYSYFGKIFRKEKRH-KGRSTENYQIGIELFGESADKSELEILSLALQVIE 168 (344)
T ss_dssp SCCCEEEEEEEECCCCCC--------CCEEEEEEEESSCHHHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECcEEccCCCC-CCCcceeEEEEEEEEcCCCcHHHHHHHHHHHHHHH
Confidence 1235999999999999763 44788999999998765432 245555544444
|
| >1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=1.2e-05 Score=82.81 Aligned_cols=104 Identities=14% Similarity=0.126 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC---C-CC---CcceeEe-ccCCCceeecc--ChHHHHhhhccCC--
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---S-EG---GSAVFRL-DYKGQSACLAQ--SPQLHKQMSICGD-- 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~-eg---ga~~F~v-~~~~~~~~L~~--Spql~lq~~i~~g-- 313 (435)
.-.+++..|.+.+|+-|...||.||.||+|.... . -| +.+.|.+ +--|+.+.|+- .|.+..-.+-...
T Consensus 18 ~~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~~~em~~~~D~~g~~l~LrPd~t~~~aR~~~~~~~~~ 97 (434)
T 1wu7_A 18 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQ 97 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHhhhccCCccccceEEEECCCCCEEEeCCCChHHHHHHHHhcCCCC
Confidence 3456788999999999999999999999998643 1 11 2346776 44678888884 2333322111111
Q ss_pred C-ceeEEEecceecCCCCCCccccccccceeeeecccc
Q 013865 314 F-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH 350 (435)
Q Consensus 314 ~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~ 350 (435)
+ -|.|+||++||.|.+.-. +.-||+|+++|.-..++
T Consensus 98 lP~rl~~~g~vfR~erp~~g-R~REF~Q~d~ei~g~~~ 134 (434)
T 1wu7_A 98 RPLRWYSFPKVWRYEEPQAG-RYREHYQFNADIFGSDS 134 (434)
T ss_dssp SSEEEEECCEEECCCCSCSS-CCSEEEEEEEEEESCCS
T ss_pred CCeEEEEEcCeecCCCCCCC-CccceEEeeEEEEcCCC
Confidence 2 499999999999976433 57899999999876654
|
| >1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=7.7e-06 Score=88.54 Aligned_cols=101 Identities=17% Similarity=0.124 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CCC-----cceeEe-ccCC-CceeeccChH-----HHHhhhc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG-----SAVFRL-DYKG-QSACLAQSPQ-----LHKQMSI 310 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---egg-----a~~F~v-~~~~-~~~~L~~Spq-----l~lq~~i 310 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... -|+ -+.|.+ +--+ +.++|+--.. +|.+...
T Consensus 269 ~g~~~~~~l~~~ir~~~~~~Gy~eV~tP~l~~~~l~~~sG~~d~~~~~mf~~~d~~~~~~~~LrP~~~~~~~~~~~~~~~ 348 (645)
T 1nyr_A 269 NGATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPH 348 (645)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCC
T ss_pred CHHHHHHHHHHHHHHHHHHcCCEEEECCeeccHHHHhhCCCccccccCcceeEecCCCeEEEeCCCCCHHHHHHHHhhhh
Confidence 45788899999999999999999999999986431 121 234543 3346 7888885432 3333221
Q ss_pred c-CCC-ceeEEEecceecCCCCCCcc----ccccccceeeeecc
Q 013865 311 C-GDF-GRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIK 348 (435)
Q Consensus 311 ~-~g~-~rVfeIgp~FR~E~s~t~rH----l~EFt~lE~e~a~~ 348 (435)
. ..+ -|+|+||+|||+|.+. .+| .-||||+|+|. |.
T Consensus 349 syr~LPlrl~~~g~~fR~E~~~-~~~GL~R~ReF~Q~d~~~-f~ 390 (645)
T 1nyr_A 349 SYRELPIRIAELGTMHRYEASG-AVSGLQRVRGMTLNDSHI-FV 390 (645)
T ss_dssp BGGGCCEEEEEEEEEECCCCTT-TCBTTTBCSEEEEEEEEE-EE
T ss_pred hccCCCeEEEEeccEEecCCCc-cccCcceeeeEEEccEEE-Ec
Confidence 1 122 3999999999999973 333 47999999998 54
|
| >1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A | Back alignment and structure |
|---|
Probab=98.05 E-value=1.3e-05 Score=81.91 Aligned_cols=116 Identities=20% Similarity=0.294 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--CC-C-------cceeEe-ccCCCceeecc--ChHHHHhhh---c
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EG-G-------SAVFRL-DYKGQSACLAQ--SPQLHKQMS---I 310 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--eg-g-------a~~F~v-~~~~~~~~L~~--Spql~lq~~---i 310 (435)
-.+++..|.+.+|+-|...||.||.||+|..... .+ | .+.|.+ +--|+.+.|+- .|.+..-.+ .
T Consensus 16 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~ar~~~~~~~ 95 (421)
T 1h4v_B 16 ELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRAYLEHGM 95 (421)
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccccHHHhhhccCCcccccccceEEEECCCCCEEeeCCcchHHHHHHHHhccc
Confidence 4567888999999999999999999999976431 11 2 246765 44677888873 333333211 1
Q ss_pred c-CC-CceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHH
Q 013865 311 C-GD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFV 363 (435)
Q Consensus 311 ~-~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~ 363 (435)
. .. --|.|+||++||.|.+. .-+.-||+|+++|.-..++. .+++.++.+++.
T Consensus 96 ~~~~lP~rl~~~g~vfR~e~p~-~gR~REf~Q~g~e~~g~~~~~ad~e~i~~~~~~l~ 152 (421)
T 1h4v_B 96 KVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGSENPILDAEAVVLLYECLK 152 (421)
T ss_pred cccCCCeEEEEecCeecCCCCC-CCCcccEEEccEEEECCCChhhhHHHHHHHHHHHH
Confidence 1 11 24999999999999764 33568999999998765432 144444444443
|
| >1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-05 Score=82.40 Aligned_cols=115 Identities=13% Similarity=0.086 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CCC------cceeEeccC-----CCceeeccChH-----HHH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... ++| .+.|.+..- +.+++||--.. +|.
T Consensus 42 ~g~~l~~~I~~~~r~~~~~~G~~ei~tP~l~~~el~~~~sgh~d~f~~emy~~~d~g~~~l~~~l~LRP~~~~~i~~~~~ 121 (477)
T 1hc7_A 42 YGYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWS 121 (477)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHhhcCCcccccccceEEEECCCCccCCCeEEEcCCCcHHHHHHHH
Confidence 34667889999999999999999999999987551 122 235665432 57899986554 566
Q ss_pred hhhccC-CC-ceeEEEecceecCCC-CCCccccccccceeeeeccccHHHHHHHHHHH
Q 013865 307 QMSICG-DF-GRVFETGPVFRAEDS-YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRL 361 (435)
Q Consensus 307 q~~i~~-g~-~rVfeIgp~FR~E~s-~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~l 361 (435)
+.+... .+ -|+|+||+|||+|.+ .+.--.-||+|+|.+..+.+ ..++...+..|
T Consensus 122 ~~~~s~r~LP~rl~qig~vfR~E~~~rGl~R~REF~q~d~~~~~~~-~~~ad~E~~~~ 178 (477)
T 1hc7_A 122 KWIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHAT-REEAEEEVRRM 178 (477)
T ss_dssp HHCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHH
T ss_pred hhhhccccCCeeeEeecCEEeCCCCCCCcceeEEEEEccEEEEeCC-HHHHHHHHHHH
Confidence 543321 33 399999999999964 12113469999999998875 55554444444
|
| >3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.03 E-value=1.6e-05 Score=81.34 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC------CCCcceeEe-ccCCCceeecc--ChHHHH---hhhccCC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS------EGGSAVFRL-DYKGQSACLAQ--SPQLHK---QMSICGD 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~------egga~~F~v-~~~~~~~~L~~--Spql~l---q~~i~~g 313 (435)
.-.+++..|.+.+|+.|...||.||.||++..... ....+.|.+ +--|+.+.||- .|.+.. ..+-...
T Consensus 22 ~~~~~~~~i~~~l~~~~~~~Gy~eI~tP~lE~~el~~~~g~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~ 101 (400)
T 3od1_A 22 EWYKTKKNICDQMTEEINLWGYDMIETPTLEYYETVGVVSAILDQQLFKLLDQQGNTLVLRPDMTAPIARLVASSLKDRA 101 (400)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETTTHHHHSSSCGGGSCEEECTTSCEEEECSCSHHHHHHHHHHHCSSSC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccceEEEECCCCCEEEECCCCHHHHHHHHHhhcccCC
Confidence 34567888999999999999999999999964331 112346765 44567777772 233322 1111122
Q ss_pred C-ceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 314 F-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 314 ~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
+ -|.|+||+|||.|.+. .-+.-||+|+++|.-..++. -+++.++.+++..
T Consensus 102 ~P~r~~y~g~vfR~e~~~-~gR~Ref~Q~g~ei~G~~~~~aDaEvi~l~~~~l~~ 155 (400)
T 3od1_A 102 YPLRLAYQSNVYRAQQNE-GGKPAEFEQLGVELIGDGTASADGEVIALMIAALKR 155 (400)
T ss_dssp SCEEEEEEEEEECCCC----CCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEEcCEEeCCCCC-CCCCCccEEeEEEEECCCChHhHHHHHHHHHHHHHH
Confidence 3 4999999999999864 44678999999998765433 2566666666654
|
| >1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* | Back alignment and structure |
|---|
Probab=97.99 E-value=1.3e-05 Score=81.94 Aligned_cols=116 Identities=19% Similarity=0.233 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---C-CC------cceeEe-ccCCCceeecc--ChHHHHhhhcc--
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---E-GG------SAVFRL-DYKGQSACLAQ--SPQLHKQMSIC-- 311 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---e-gg------a~~F~v-~~~~~~~~L~~--Spql~lq~~i~-- 311 (435)
-.+++..|.+.+|+-|...||.||.||++..... . |. .+.|.+ +--|+.+.|+- .|.+..-.+-.
T Consensus 17 ~~~~~~~i~~~i~~~~~~~G~~ei~tP~le~~el~~~~~G~~~d~~~~em~~~~D~~g~~l~Lrpd~t~~~aR~~~~~~~ 96 (423)
T 1htt_A 17 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGL 96 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCSSSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEecccccCHHHHHhhccCCchhhhhhheEEEEcCCCCEEEeCCCchHHHHHHHHhccc
Confidence 4567888999999999999999999999986431 1 21 246776 44677888873 23332211101
Q ss_pred -CC-CceeEEEecceecCCCCCCccccccccceeeeeccccHH---HHHHHHHHHHH
Q 013865 312 -GD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYS---EVMDIVDRLFV 363 (435)
Q Consensus 312 -~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~---d~m~~~e~li~ 363 (435)
.. --|.|+||++||.|.+. .-+.-||+|+++|.-..++.. +++.++.+++.
T Consensus 97 ~~~~P~rl~~~g~vfR~e~p~-~gR~Ref~Q~d~e~~g~~~~~ad~e~i~~~~~~l~ 152 (423)
T 1htt_A 97 LYNQEQRLWYIGPMFRHERPQ-KGRYRQFHQLGCEVFGLQGPDIDAELIMLTARWWR 152 (423)
T ss_dssp STTCCEEEEEEEEEECCCCCC-SSCCSEEEEEEEEEESCCSHHHHHHHHHHHHHHHH
T ss_pred ccCCCeEEEEEcCEecCCCCC-CCccceeEEeeEEEECCCCchhhHHHHHHHHHHHH
Confidence 12 25999999999999764 446789999999987755332 34444444443
|
| >4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.4e-05 Score=83.34 Aligned_cols=118 Identities=18% Similarity=0.245 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---C-CC------cceeEe-ccC-CCceeecc--ChHHHH---hh
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---E-GG------SAVFRL-DYK-GQSACLAQ--SPQLHK---QM 308 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---e-gg------a~~F~v-~~~-~~~~~L~~--Spql~l---q~ 308 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... . |. .+.|.+ +-- |+.+.|+- .|.+.. +.
T Consensus 44 ~~~~~~~~l~~~i~~~~~~~Gy~eI~tP~le~~el~~~~~G~~~d~~~~~my~~~D~~~g~~l~LRPd~t~~~ar~~~~~ 123 (467)
T 4e51_A 44 QDAGLWEFFEATVKSLLRAYGYQNIRTPIVEHTPLFTRGIGEVTDIVEKEMYSFVDALNGENLTLRPENTAAVVRAAIEH 123 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHTCTTSHHHHHTCCEEECTTTCCEEEECSCSHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHhhhccCCcccccccceEEEecCCCCCEEEeCcccHHHHHHHHHHc
Confidence 34667889999999999999999999999975431 1 22 236765 334 77888883 333322 21
Q ss_pred hccCC-CceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 309 SICGD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 309 ~i~~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
..... --|.|+||+|||.|.+.. -+.-||+|+++|+-..++. .+++.++.+++..
T Consensus 124 ~~~~~lP~r~~~~g~vfR~E~~~~-gR~ReF~Q~d~ei~g~~~~~adaEvi~l~~~~l~~ 182 (467)
T 4e51_A 124 NMLYDGPKRLWYIGPMFRHERPQR-GRYRQFHQVGVEALGFAGPDADAEIVMMCQRLWED 182 (467)
T ss_dssp TTTTTSCEEEEEEEEEECCCCC----CCSEEEEEEEEEETCCCSHHHHHHHHHHHHHHHH
T ss_pred ccccCCCEEEEEEccEEccCCCCC-CCcCceEEEEEEEEeCCChHHHHHHHHHHHHHHHH
Confidence 11111 249999999999998644 4567999999998654321 3566666666654
|
| >3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} | Back alignment and structure |
|---|
Probab=97.97 E-value=9.4e-06 Score=84.54 Aligned_cols=119 Identities=16% Similarity=0.210 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC-----CCCCcc-eeEeccC----------------CCceeecc--C
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-----SEGGSA-VFRLDYK----------------GQSACLAQ--S 301 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~-----~egga~-~F~v~~~----------------~~~~~L~~--S 301 (435)
.-.+++..|.+.+|+.|...||.||.||++-... .+...+ .|.+.-- |+.+.||- .
T Consensus 24 ~~~~~~~~i~~~l~~~~~~~Gy~~i~tP~~E~~~~~~~~G~~~ke~m~~~~d~~~~g~~~~~~~~~~~~g~~l~LRpd~T 103 (465)
T 3net_A 24 SEKRLELYLLDTIRRVYESYGFTPIETPAVERLEVLQAKGNQGDNIIYGLEPILPPNRQAEKDKSGDTGSEARALKFDQT 103 (465)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHGGGCC--CBEEEEEEEC----------------CCEEECSCSH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEeeccccccHHHHhccCCCCccceEEEecccccccccccccccCCCCCEEEeCCCCh
Confidence 3456788899999999999999999999984321 122234 6765322 57788872 2
Q ss_pred hHH---HHhhhccCC-CceeEEEecceecCCCCCCccccccccceeeeeccccH-----HHHHHHHHHHHHHH
Q 013865 302 PQL---HKQMSICGD-FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY-----SEVMDIVDRLFVTI 365 (435)
Q Consensus 302 pql---~lq~~i~~g-~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~-----~d~m~~~e~li~~i 365 (435)
|.+ +.+...... --|.|+||||||.|.+. .-+.-||+|+++|+-..++. -|++.++-+++..+
T Consensus 104 ~~~aR~~~~~~~~~~~p~r~~y~g~vfR~e~~~-~gr~Ref~Q~g~ei~G~~~~~a~~DaEvi~l~~~~l~~l 175 (465)
T 3net_A 104 VPLAAYIARHLNDLTFPFARYQMDVVFRGERAK-DGRFRQFRQCDIDVVGREKLSLLYDAQMPAIITEIFEAV 175 (465)
T ss_dssp HHHHHHHHHHGGGSCSSEEEEECCEEECBC-------CCEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccccCCCeEEEEeccEEecCCCC-CCCcceeEEeeEEEECCCCccchhhHHHHHHHHHHHHHc
Confidence 332 222221112 24999999999999864 44678999999998664321 15777776766543
|
| >2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.9e-05 Score=82.71 Aligned_cols=111 Identities=19% Similarity=0.215 Sum_probs=76.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C-C-----CcceeEe-ccCCCceeeccCh-----HHHHhhhcc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E-G-----GSAVFRL-DYKGQSACLAQSP-----QLHKQMSIC 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e-g-----ga~~F~v-~~~~~~~~L~~Sp-----ql~lq~~i~ 311 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... . | +.+.|.+ +--++.++|+--. .+|...+..
T Consensus 45 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sG~~~~~~~~m~~~~d~~~~~~~LrP~~~~~~~~~~~~~~~s 124 (572)
T 2j3l_A 45 LANRVLEKLKTIMREEFEKIDAVEMLMPALLPAELWKESGRYETYGPNLYRLKDRNDRDYILGPTHEETFTELIRDEINS 124 (572)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEECBCCSEEETHHHHHHSHHHHSCTTSCEEECTTCCEEEECSCCHHHHHHHHHHHCCB
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccccHHHHHhcCCccccchheEEEecCCCCeEEEccccHHHHHHHHHhhccC
Confidence 45778889999999999999999999999986531 1 2 2245665 3456889998444 244443321
Q ss_pred -CCC-ceeEEEecceecCCCCCCcc----ccccccceeeeeccccHHHHHHHHH
Q 013865 312 -GDF-GRVFETGPVFRAEDSYTHRH----LCEFTGLDVEMEIKKHYSEVMDIVD 359 (435)
Q Consensus 312 -~g~-~rVfeIgp~FR~E~s~t~rH----l~EFt~lE~e~a~~~~~~d~m~~~e 359 (435)
..+ -|+|+||+|||+|.+ + +| .-||+|+|+|.-..+ -.++...+.
T Consensus 125 ~~~lP~r~~~~g~~fR~E~~-~-~~Gl~R~ReF~q~d~~~f~~~-~~~~~~e~~ 175 (572)
T 2j3l_A 125 YKRLPLNLYQIQTKYRDEKR-S-RSGLLRGREFIMKDGYSFHAD-EASLDQSYR 175 (572)
T ss_dssp GGGCCEEEEEEEEEECCCSS-C-CTGGGSCSEEEEEEEEEEESS-HHHHHHHHH
T ss_pred hhhcCHhhheecCeeccCcC-c-ccCccccceeEEeeeEEEcCC-HHHHHHHHH
Confidence 123 399999999999986 3 33 479999999987653 334433333
|
| >1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=4.1e-05 Score=79.61 Aligned_cols=111 Identities=18% Similarity=0.156 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC----CC-----CcceeEeccC-----CCceeeccChH-----HHH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS----EG-----GSAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~----eg-----ga~~F~v~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... -| +.+.|.+..- +..++|+--.. +|.
T Consensus 36 ~g~~l~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~~~G~~~~~~~emy~~~d~g~~~~~~~l~LRP~~~~~i~~~~~ 115 (459)
T 1nj8_A 36 YGFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMK 115 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEeeCCcccCHHHHhhhcCcccccchhhEEEeccCcccCCCeeEECCCCcHHHHHHHH
Confidence 44667889999999999999999999999986431 11 2346776543 57889985443 344
Q ss_pred hhhccC-CC-ceeEEEecceecCCCCCCc--cccccc-cceeeeeccccHHHHHHH
Q 013865 307 QMSICG-DF-GRVFETGPVFRAEDSYTHR--HLCEFT-GLDVEMEIKKHYSEVMDI 357 (435)
Q Consensus 307 q~~i~~-g~-~rVfeIgp~FR~E~s~t~r--Hl~EFt-~lE~e~a~~~~~~d~m~~ 357 (435)
+..... .+ -|+|+||+|||+|.+.+.- -.-||+ |+|.+..+.+ ..++...
T Consensus 116 ~~~~s~r~LP~rl~qig~~fR~E~~~~rGl~R~REF~qq~d~~~~~~~-~~~a~~e 170 (459)
T 1nj8_A 116 LWVKVHTDLPIKIYQIVNTFRYETKHTRPLIRLREIMTFKEAHTAHST-KEEAENQ 170 (459)
T ss_dssp TTCCBTTSCCCCEEEEECCBCCCCSCCBTTTBCSBCSCEEEEEEEESS-HHHHHHH
T ss_pred HhhhhcccCCeEEEEEccEecCccCCCCCceEeeeeeccCcEEEEECC-HHHHHHH
Confidence 432221 23 3999999999999862111 346999 9999988875 4554444
|
| >3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.3e-05 Score=78.32 Aligned_cols=117 Identities=14% Similarity=0.131 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-----C-CC-cceeEe-ccCCCceeecc--ChHHHHh---hhc-cCC
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-----E-GG-SAVFRL-DYKGQSACLAQ--SPQLHKQ---MSI-CGD 313 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-----e-gg-a~~F~v-~~~~~~~~L~~--Spql~lq---~~i-~~g 313 (435)
.+++..|...+|+.|...||.||.||++..... + .. .+.|.+ +--|+.+.||- .|++..- .+- ...
T Consensus 37 ~~~~~~i~~~i~~~f~~~Gy~eI~tP~le~~el~~~~g~~~~~~~my~~~D~~g~~l~LRpd~T~~~aR~~~~~~~~~~~ 116 (373)
T 3rac_A 37 AKRRRAVETRLLSFVEDAGYEPVTSGLFEYVDTLLRARSPESSRDWIRLFDGGGDAVALRPEMTPSIARMAAPRVAAGRT 116 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHTTSCTTSCCCCCBCCCCSSSCEEECSSSHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHcCCeEEECCceeeHHHHhhcCCccchhceEEEECCCCCEEEECCcCHHHHHHHHHhccccCCC
Confidence 566788999999999999999999999875421 1 12 345655 33467777762 2332221 110 122
Q ss_pred CceeEEEecceecCCCC-----CCccccccccceeeeeccc-cH---HHHHHHHHHHHHH
Q 013865 314 FGRVFETGPVFRAEDSY-----THRHLCEFTGLDVEMEIKK-HY---SEVMDIVDRLFVT 364 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~-----t~rHl~EFt~lE~e~a~~~-~~---~d~m~~~e~li~~ 364 (435)
--|.|+||+|||.|.+. ..-+.-||+|+++|.-..+ +. -+++.++.+++..
T Consensus 117 P~r~~y~g~vfR~e~~g~~~~~~~gR~ReF~Q~g~ei~g~~d~~~aDaEvi~l~~~~l~~ 176 (373)
T 3rac_A 117 PIRWCYCERVYRRTDDPASLSWASGKAAESTQVGIERIGEEASVDVDMDVLRLLHEASAA 176 (373)
T ss_dssp CCEEEEEEEEEECC------------CEEEEEEEEEECSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEcceEccCCCcccccccCCccceeEEeeeEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 46999999999999751 2346789999999986654 22 2566666666654
|
| >3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A | Back alignment and structure |
|---|
Probab=97.89 E-value=4e-05 Score=79.68 Aligned_cols=116 Identities=15% Similarity=0.176 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--CC-Cc----ceeEe-ccCCCceeecc--ChHHHHhhhccCC---
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--EG-GS----AVFRL-DYKGQSACLAQ--SPQLHKQMSICGD--- 313 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--eg-ga----~~F~v-~~~~~~~~L~~--Spql~lq~~i~~g--- 313 (435)
-.+++..|...+|+.|...||.||.||++..... .+ |. +.|.+ +--|+.+.||- .|.+..- ++...
T Consensus 42 ~~~~~~~i~~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~G~~~~~~my~f~D~~g~~l~LRpd~T~~~aR~-~~~~~~~~ 120 (456)
T 3lc0_A 42 AMRCRRHLFDVFHATAKTFGFEEYDAPVLESEELYIRKAGEEITEQMFNFITKGGHRVALRPEMTPSLARL-LLGKGRSL 120 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCCHHHHTCEEEECSSSCEEEECSCSHHHHHHH-HHHSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCcEeehhhhccccccchhhceEEEEcCCCCEEecCCcCHHHHHHH-HHhcCccc
Confidence 3467888999999999999999999999976542 11 22 35665 34567777772 2333221 11111
Q ss_pred --CceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 314 --FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 314 --~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
--|.|+||+|||.|.+. .-+.-||+|+++|+-..++. -+++.++.+++..
T Consensus 121 ~~P~r~~y~g~vfR~e~~~-~gR~ReF~Q~g~ei~G~~~~~~DaEvi~l~~~~l~~ 175 (456)
T 3lc0_A 121 LLPAKWYSIPQCWRYEAIT-RGRRREHYQWNMDIVGVKSVSAEVELVCAACWAMRS 175 (456)
T ss_dssp CSSEEEEECCEEECCCC------CCEEEEEEEEEESCCSTHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeccEEecCCCC-CCCccceEEEEEEEEcCCChHhhHHHHHHHHHHHHH
Confidence 35899999999999864 34678999999998764322 2466666666654
|
| >1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A | Back alignment and structure |
|---|
Probab=97.89 E-value=7.7e-05 Score=76.77 Aligned_cols=115 Identities=11% Similarity=0.150 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----C---C-CCcceeEeccCCCceeeccChHHHHhhhccC-----
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----S---E-GGSAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~---e-gga~~F~v~~~~~~~~L~~Spql~lq~~i~~----- 312 (435)
.-.+++.+|.+++++.+...||.||.||.|.... + + -+.+.|.+. +.++||+-..+-..-.++..
T Consensus 164 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~L~Pt~e~~~~~~~~~~~~s~ 241 (421)
T 1ses_A 164 DLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILPY 241 (421)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBBT--TSSEEECSSTHHHHHHTTTTCEEEG
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCceecHHHHHhcCCCCcCchhcEEEc--CCeEEEeecCcHHHHHHhcccccCc
Confidence 4566788999999999999999999999998543 1 0 122355553 56889987665444333222
Q ss_pred -CC-ceeEEEecceecCCC------CCCccccccccceeeeeccccHHHHHHHHHHHH
Q 013865 313 -DF-GRVFETGPVFRAEDS------YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s------~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
.+ -|+|++|+|||+|-+ .+.--.-||+|+|++.....+.++..+..++++
T Consensus 242 ~~LPlr~~~~g~~FR~E~g~~Gr~~~GL~R~rqF~q~E~~~f~~p~~e~s~~~~~e~~ 299 (421)
T 1ses_A 242 EALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELL 299 (421)
T ss_dssp GGCSEEEEEEEEEECCCCSCCCSCCCTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHH
T ss_pred hhCCEEEEecCCeecCCccccCcCCCCCeeeeeeeeeeEEEEeCCCHHHHHHHHHHHH
Confidence 12 399999999999952 121134699999987654321244444444444
|
| >3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* | Back alignment and structure |
|---|
Probab=97.88 E-value=3.8e-05 Score=79.93 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHHHHHHh-hcCCeEEeeCceeeccC----C---CC-CcceeEecc---CCCceeeccChH-----HHHhh
Q 013865 246 GIFRIQSQVGNIFRQFL-LSENFVEIHTPKLIAGS----S---EG-GSAVFRLDY---KGQSACLAQSPQ-----LHKQM 308 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl-~~~gF~EV~TP~l~~~~----~---eg-ga~~F~v~~---~~~~~~L~~Spq-----l~lq~ 308 (435)
.-.+++..|.+.+|+.+ .+.||.||.||+|.... + +. +.+.|.+.- -+..++|+-..+ +|.+.
T Consensus 62 ~g~~l~~~l~~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~emy~~~d~~~~~~~l~LrPt~~~~~~~~~~~~ 141 (460)
T 3uh0_A 62 NGAKIFNKLIEFMKLQQKFKFGFNEVVTPLIYKKTLWEKSGHWENYADDMFKVETTDEEKEEYGLKPMNCPGHCLIFGKK 141 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCCEECCCCSEEEHHHHHHHTCTTTSGGGSCEECC------CEEECSCSHHHHHHHHTTS
T ss_pred cHHHHHHHHHHHHHHHHHHhcCCEEEECCeeccHHHHHhcCCccccccceEEEecCCCCCceEEEcccCcHHHHHHHHhc
Confidence 45778889999999999 99999999999997543 1 11 223566543 257889985542 33332
Q ss_pred hcc-CCC-ceeEEEecceecCCCC---CCccccccccceeeeeccccHHHHHHHHHHHH
Q 013865 309 SIC-GDF-GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 309 ~i~-~g~-~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
... ..+ =|+|++|+|||+|.+. +..-.-||+|.|.+. |.. -+++.+.+++++
T Consensus 142 ~~s~r~LPlrl~~~g~~fR~E~~~~~~GL~R~ReF~q~d~~~-f~~-~e~~~~e~~~~i 198 (460)
T 3uh0_A 142 DRSYNELPLRFSDFSPLHRNEASGALSGLTRLRKFHQDDGHI-FCT-PSQVKSEIFNSL 198 (460)
T ss_dssp CCBGGGCSEEEEECCEEECCCCTTTCBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHHH
T ss_pred cccccccCeEEEEecCeeeCCCCCCCCCceeeeeEEEeeEEE-EcC-HHHHHHHHHHHH
Confidence 221 122 3899999999999863 222346999999996 543 344444444333
|
| >3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=5.1e-05 Score=79.82 Aligned_cols=100 Identities=11% Similarity=0.076 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-------CC-CcceeEecc---------CCCceeeccChHHHHhh
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-------EG-GSAVFRLDY---------KGQSACLAQSPQLHKQM 308 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-------eg-ga~~F~v~~---------~~~~~~L~~Spql~lq~ 308 (435)
.-.+++.+|++++++.+.++||.||.||.|..... ++ +.+.|.+.- -+.++||.-..+.-+=.
T Consensus 199 ~GarL~raL~~f~~d~~~~~Gy~EV~~P~lv~~el~~~sG~l~~f~eemy~v~~~g~~~~~~~~~~~l~L~PTaE~~l~~ 278 (522)
T 3vbb_A 199 VLVFLEQALIQYALRTLGSRGYIPIYTPFFMRKEVMQEVAQLSQFDEELYKVIGKGSEKSDDNSYDEKYLIATSEQPIAA 278 (522)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHSCCC-CCSCCCEEC------------CCEEECSSTHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCcccchHHHhhcCCcccCcccceEeecCCccccccccCcceeEcccCcHHHHH
Confidence 56788999999999999999999999999975431 11 234676643 24679999666554322
Q ss_pred hccC------CC-ceeEEEecceecCCCC------CCccccccccceeee
Q 013865 309 SICG------DF-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEM 345 (435)
Q Consensus 309 ~i~~------g~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~ 345 (435)
+... .+ =|+|++|+|||+|-+. +.--.-||+|.|.+.
T Consensus 279 l~~~ei~s~~dLPlr~~~~s~cFR~Eags~GrdtrGL~RvhQF~kvE~~~ 328 (522)
T 3vbb_A 279 LHRDEWLRPEDLPIKYAGLSTCFRQEVGSHGRDTRGIFRVHQFEKIEQFV 328 (522)
T ss_dssp TSTTCEECTTTCCEEEEEEEEEECSCCCC----CCCSSSCSEEEEEEEEE
T ss_pred HHhhhecccccCCeeEEEecccccCCCCcCCccCCCcceeeeeEEEEEEE
Confidence 2111 22 3799999999999742 112335999999974
|
| >2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A | Back alignment and structure |
|---|
Probab=97.88 E-value=3.2e-05 Score=80.38 Aligned_cols=114 Identities=11% Similarity=0.162 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CCCc-----ceeEeccCCCceeeccChHHH-----Hhhhcc-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGGS-----AVFRLDYKGQSACLAQSPQLH-----KQMSIC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---egga-----~~F~v~~~~~~~~L~~Spql~-----lq~~i~- 311 (435)
.-.+++..|.+++++.+...||.||.||.|..... .|.. +.|.+. +.++||+-..+.. ....+.
T Consensus 191 ~ga~l~~aL~~~~~~~~~~~Gy~ev~tP~l~~~~l~~~sG~~~~f~~emy~~~--d~~l~LrPt~e~~~~~~~~~~~~s~ 268 (455)
T 2dq0_A 191 EIVILDLALIRFALDRLIEKGFTPVIPPYMVRRFVEEGSTSFEDFEDVIYKVE--DEDLYLIPTAEHPLAGMHANEILDG 268 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHTTSCTTHHHHTCCBBT--TSSCEECSSTHHHHHHTTTTEEEET
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCcccCHHHHHhcCCCCCChHhhCeec--CCcEEEcCcCcHHHHHHHHhCccCc
Confidence 45667789999999999999999999999986431 1221 245443 5788998665433 332221
Q ss_pred CCC-ceeEEEecceecCCCCC------CccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 312 GDF-GRVFETGPVFRAEDSYT------HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 312 ~g~-~rVfeIgp~FR~E~s~t------~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
..+ -|+|++|+|||+|.+.. ..-.-||+|.|++ .|.. -++..+..++++.
T Consensus 269 ~~LPlr~~~~g~~FR~E~~~~G~~~~GL~R~rqF~kvE~~-~f~~-pe~s~~~~~e~l~ 325 (455)
T 2dq0_A 269 KDLPLLYVGVSPCFRKEAGTAGKDTKGIFRVHQFHKVEQF-VYSR-PEESWEWHEKIIR 325 (455)
T ss_dssp TTCSEEEEEEEEEECCCTTCSSCSCCSSSSCSEEEEEEEE-EEEC-TTTHHHHHHHHHH
T ss_pred hhCCEEEEEecCcccCCCCccccccCCceeeeeeEeeeEE-EecC-HHHHHHHHHHHHH
Confidence 123 39999999999998521 1133599999998 4554 3565555555554
|
| >1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=3.9e-05 Score=83.02 Aligned_cols=102 Identities=20% Similarity=0.223 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----CcceeEeccCCCceeeccChH-----HHHhhhccC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQ-----LHKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~Spq-----l~lq~~i~~ 312 (435)
.-.+++..|.+.+|+.+...||.||.||+|..... -| +-+.|.++--++.++|+--.. +|.+.....
T Consensus 269 ~g~~l~~~l~~~~r~~~~~~Gy~ev~tP~l~~~~l~~~sGh~~~~~~~my~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy 348 (642)
T 1qf6_A 269 DGWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSY 348 (642)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTEEEEECSSSHHHHHHHHTTSCEEG
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEECCcCccHHHHhhcCccccccccceeeecCCceEEecCCCCHHHHHHHHhhhhhc
Confidence 56778899999999999999999999999986431 02 234676554567888885442 344322211
Q ss_pred -CC-ceeEEEecceecCCCCCCc----cccccccceeeeeccc
Q 013865 313 -DF-GRVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEIKK 349 (435)
Q Consensus 313 -g~-~rVfeIgp~FR~E~s~t~r----Hl~EFt~lE~e~a~~~ 349 (435)
.+ =|+|+||+|||+|.+ +.+ -.-||||.|++. |.+
T Consensus 349 r~LPlr~~~~g~~fR~E~~-g~~~GL~R~ReF~q~d~~~-f~~ 389 (642)
T 1qf6_A 349 RDLPLRMAEFGSCHRNEPS-GSLHGLMRVRGFTQDDAHI-FCT 389 (642)
T ss_dssp GGCSEEEEEEEEEECCCCG-GGCBTTTBCSEEEEEEEEE-EEC
T ss_pred cccCeEEEEeccEEecCCC-ccccCCceeeeEEEccEEE-EcC
Confidence 22 399999999999986 222 356999999997 543
|
| >1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* | Back alignment and structure |
|---|
Probab=97.81 E-value=4.3e-05 Score=80.36 Aligned_cols=115 Identities=20% Similarity=0.208 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC---CCCC------cceeEeccC-----CCceeeccChH-----HHH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGG------SAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~egg------a~~F~v~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-.+++..|.+.+|+.|.. ||.||.||+|.... .+.| -+.|.+..- +.+++|+-..+ +|.
T Consensus 69 ~g~~l~~~i~~~~~~~~~~-G~~ei~tP~l~~~~l~~~~sG~~~~f~~emy~~~d~g~~~~~~~l~LrPt~e~~i~~~~~ 147 (501)
T 1nj1_A 69 HGFMIRKNTLKILRRILDR-DHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFA 147 (501)
T ss_dssp HHHHHHHHHHHHHHHHHTT-TCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHc-CCEEEecCcEecHHHHhcccCCcccCCcceEEEecCCCcccCCeeEEccCCCHHHHHHHH
Confidence 4456778899999999999 99999999998654 1111 235666442 56889985543 445
Q ss_pred hhhccC-CC-ceeEEEecceecCCCCCCc--cccccc-cceeeeeccccHHHHHHHHHHHH
Q 013865 307 QMSICG-DF-GRVFETGPVFRAEDSYTHR--HLCEFT-GLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 307 q~~i~~-g~-~rVfeIgp~FR~E~s~t~r--Hl~EFt-~lE~e~a~~~~~~d~m~~~e~li 362 (435)
+..... .+ -|+|+||+|||+|.+.+.- =.-||+ |+|.+..+.+ .+++...+++++
T Consensus 148 ~~~~s~~~LPlr~~q~g~~fR~E~~~~rGl~R~REF~~q~e~~~~~~~-~e~a~~e~~~~l 207 (501)
T 1nj1_A 148 LWVRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHAT-ASEAEEQVERAV 207 (501)
T ss_dssp HHCCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESS-HHHHHHHHHHHH
T ss_pred hhhcccccCCEEEEeecCEeeCCCCCCCCCceeEEEeeeeeEEEEECC-HHHHHHHHHHHH
Confidence 433322 33 3999999999999852211 235999 9999988875 566555554444
|
| >3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.80 E-value=3.5e-05 Score=80.81 Aligned_cols=50 Identities=22% Similarity=0.397 Sum_probs=42.1
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+|+||+|||+|.. +.+|+|+|+|+|..+... -++.|++.+++.++..+
T Consensus 348 iriFeiGrVFR~d~~-DatHlpeFhQlegl~~~~~v~f~dLKg~Le~~l~~l 398 (508)
T 3l4g_A 348 VKYFSIDRVFRNETL-DATHLAEFHQIEGVVADHGLTLGHLMGVLREFFTKL 398 (508)
T ss_dssp EEEEEEEEEECCSCC-CSSSCSEEEEEEEEEEEESCCHHHHHHHHHHHHHTT
T ss_pred ceEEEEccEEecCCC-CCCcCCeEEEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 489999999999984 789999999999987642 14889999999988775
|
| >3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00014 Score=77.02 Aligned_cols=118 Identities=11% Similarity=0.140 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--------CCCcceeEeccCCCceeeccChHHHHhhhccC----
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGSAVFRLDYKGQSACLAQSPQLHKQMSICG---- 312 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--------egga~~F~v~~~~~~~~L~~Spql~lq~~i~~---- 312 (435)
..-.+++.+|++++++.+.++||.||.||.|..... .-+.+.|.+. +.++||.-..+..+=.+...
T Consensus 272 p~Ga~l~~aL~~~~~~~~~~~Gy~ev~~P~lv~~~l~~~sG~~~~f~e~mf~~~--~~~~~L~PT~E~~~~~l~~~~i~s 349 (536)
T 3err_A 272 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAIA--ETDLYLTGTAEVVLNALHSGEILP 349 (536)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGCCEET--TTTEEECSSTHHHHHHHTTTCEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHHhcCCcccChhhceEec--CCCEEEccCCcHHHHHHHhccccc
Confidence 356788999999999999999999999999985431 1134467764 36889986665433222211
Q ss_pred --CC-ceeEEEecceecCCCC------CCccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 313 --DF-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 313 --g~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
.+ =|+|++|+|||+|-+. +.--.-||+|.|.+.--...+++..+..++|+..
T Consensus 350 ~~~LPlr~~~~~~~fR~E~gs~Gr~~~GL~RvrqF~k~e~~~f~~pe~e~s~~~~e~~~~~ 410 (536)
T 3err_A 350 YEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLEN 410 (536)
T ss_dssp GGGCSEEEEEEEEEECCCTTCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred HhhCCeeEEEecccccCCccccCCCCCCceeeeeeEEEEEEEEECCchHHHHHHHHHHHHH
Confidence 12 3899999999999631 1224559999999853332223666666666543
|
| >3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A | Back alignment and structure |
|---|
Probab=97.74 E-value=6.4e-05 Score=78.34 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----CcceeEeccCCCceeeccChH-----HHHhhhcc-
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQ-----LHKQMSIC- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~Spq-----l~lq~~i~- 311 (435)
.-.+++..|.+.+|+.|...||.||.||+|..... .| +.+.|.++--|+.++||--.. +|.+.+-.
T Consensus 47 ~g~~~~~~i~~~~~~~~~~~G~~ei~tP~l~~~~l~~~sg~~~~~~~emy~~d~~~~~l~LRP~~t~~i~~~~~~~~~s~ 126 (471)
T 3a32_A 47 GGGPIRYALAEVLAKFHARRGYYVVETPIIASTELFKVSGHIEFYRNNMYLFDIEGHEFAVKPMNCPYHILLFLNEVAKH 126 (471)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHTCCCTTGGGGSEEEEETTEEEEECSCSHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEECCeeeehHHhhhccCccccccceEEEecCCcEEEEccccHHHHHHHHHhhhhhc
Confidence 34677889999999999999999999999986431 12 234677766678899984432 23332211
Q ss_pred C---CC-ceeEEEecceecCCCC---CCccccccccceeeeec
Q 013865 312 G---DF-GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEI 347 (435)
Q Consensus 312 ~---g~-~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~ 347 (435)
. .+ -|.|+||+|||+|.+. +.--.-||+|+|+|.-.
T Consensus 127 r~~~~lP~rl~~~g~vfR~E~~~~~~Gl~R~REF~Q~~~e~f~ 169 (471)
T 3a32_A 127 RSKLPLPFKVFEFGRVHRYEPSGSIYGLLRVRGFTQDDAHIIV 169 (471)
T ss_dssp GGGSCSSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEEEE
T ss_pred cccccCCeEEeeccceeccCCCcccccceeEEEEEECCeEEEc
Confidence 1 33 4999999999999752 11135699999999764
|
| >3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=9.9e-05 Score=77.04 Aligned_cols=117 Identities=10% Similarity=0.182 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-C--C-----CcceeEeccCCCceeeccChHHHHhhhccC----
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E--G-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG---- 312 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-e--g-----ga~~F~v~~~~~~~~L~~Spql~lq~~i~~---- 312 (435)
..-.+++.+|++++++.+.++||.||.||.|..... + | +.+.|.+.--+.++||.-..+..+=.+...
T Consensus 205 p~GarL~~aL~~f~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~mf~v~~~~~~~~L~PTaE~~l~~l~~~~i~s 284 (484)
T 3lss_A 205 GGLVQLQVALVSYSLDFLVKRGYTPFYPPFFLNRDVMGEVAQLSQFDEELYQVSGDGDKKYLIATSEMPIAAYHRGRWFT 284 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHHHTCCEEESSSSCEEECSSTHHHHHHHTTTCEES
T ss_pred CHHHHHHHHHHHHHHHHHHHcCCEEEecCccccHHHHHhcCCcccccccceEeecCCcceEEeccCcHHHHHHHhccccc
Confidence 457889999999999999999999999999986532 1 1 124576644467899987765544222111
Q ss_pred --CC-ceeEEEecceecCC-CC-----CCccccccccceeeeeccccHHH--HHHHHHHHHH
Q 013865 313 --DF-GRVFETGPVFRAED-SY-----THRHLCEFTGLDVEMEIKKHYSE--VMDIVDRLFV 363 (435)
Q Consensus 313 --g~-~rVfeIgp~FR~E~-s~-----t~rHl~EFt~lE~e~a~~~~~~d--~m~~~e~li~ 363 (435)
.+ =|+|++|+|||+|- |. +.--.-||+|.|.+. |.. -++ ..+..++|+.
T Consensus 285 y~dLPlr~~~~s~cFR~Eags~Grdt~GL~RvrqF~kvE~~~-f~~-pe~~~s~~e~e~~~~ 344 (484)
T 3lss_A 285 ELKEPLKYAGMSTCFRKEAGAHGRDTLGIFRVHQFDKIEQFV-VCS-PRQEESWRHLEDMIT 344 (484)
T ss_dssp CCSSCEEEEEEEEEECCCTTCSSSCCSTTSSCSEEEEEEEEE-EEC-SSTTHHHHHHHHHHH
T ss_pred hhhCCeeEEeecCccCCCCCcCCcccCCcceeeeEEEEEEEE-EeC-cchHHHHHHHHHHHH
Confidence 12 38999999999996 31 112234999999974 332 233 5555555544
|
| >4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00015 Score=74.80 Aligned_cols=118 Identities=14% Similarity=0.205 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC--CC-CCc---ceeEe-ccCCCceeecc--ChHHHHhhhccC--CC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS--SE-GGS---AVFRL-DYKGQSACLAQ--SPQLHKQMSICG--DF 314 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~--~e-gga---~~F~v-~~~~~~~~L~~--Spql~lq~~i~~--g~ 314 (435)
.-.+++..|.+.+|+.|...||.||.||+|.... .. .|. +.|.+ +--|+.+.||- .+.+-.- +... .-
T Consensus 26 ~~~~~~~~i~~~~~~~~~~~Gy~eI~tP~le~~el~~~~~g~~~~~~y~f~D~~g~~l~LRPd~T~~~aR~-~~~~~~~p 104 (464)
T 4g84_A 26 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARY-LAMNKLTN 104 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCC----CCCBBCCCSSCCEEECSCSHHHHHHH-HHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhccccCcCcceeEEEECCCCCEEEeCCcCcHHHHHH-HHhcCCCC
Confidence 4457788899999999999999999999996432 11 121 24543 33567788873 2222211 1111 12
Q ss_pred ceeEEEecceecCCCC-CCccccccccceeeeecc-ccH---HHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSY-THRHLCEFTGLDVEMEIK-KHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~-t~rHl~EFt~lE~e~a~~-~~~---~d~m~~~e~li~~ 364 (435)
-|.|+||++||.|... ..-+.-||+|+++|.-.. +.. -++|.++-+++..
T Consensus 105 ~k~~y~g~vfR~erp~~~~gR~Ref~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 159 (464)
T 4g84_A 105 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 159 (464)
T ss_dssp EEEEEEEEEECCCC------CCSEEEEEEEEEESCCSTTHHHHHHHHHHHHHHHH
T ss_pred ceeEEEecceeccCCccccCccceeeecceeccCCccchhhHHHHHHHHHHHHHH
Confidence 4889999999999743 233567999999998653 211 2566666665553
|
| >3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} | Back alignment and structure |
|---|
Probab=97.67 E-value=8.2e-05 Score=78.45 Aligned_cols=116 Identities=13% Similarity=0.160 Sum_probs=81.8
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CCC------cceeEeccC-----CCceeeccChH-----HHH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG------SAVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---egg------a~~F~v~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-++++..|.+.+|+.|...||.||.||+|..... ++| .+.|.+.-- +.+++|+-..+ +|.
T Consensus 53 ~G~~i~~~L~~~~~~~~~~~Gy~eV~tP~l~~~el~~k~sgh~~~f~~emy~v~d~g~~~~~~~l~LrPt~e~~i~~~~~ 132 (518)
T 3ial_A 53 YGFFMENAIMRLCEEEYAKVGISQILFPTVIPESFLKKESDHIKGFEAECFWVEKGGLQPLEERLALRPTSETAIYSMFS 132 (518)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTSSHHHHHHHGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEEcccccCHHHHHhhcCCcccccccEEEEecCCCcccCcceeECCCCcHHHHHHHH
Confidence 55678889999999999999999999999986541 222 236666432 46899985553 444
Q ss_pred hhhcc-CCC-ceeEEEecceecCCCCC--CccccccccceeeeeccccHHHHHHHHHHHH
Q 013865 307 QMSIC-GDF-GRVFETGPVFRAEDSYT--HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 307 q~~i~-~g~-~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
..... ..+ =|+|++|+|||+|-+.+ ..-.-||+|.|.+....+ .+++...++.|+
T Consensus 133 ~~i~SyrdLPlrl~q~~~~fR~E~~~~~GL~R~REF~q~e~h~f~~~-~e~a~~e~~~~l 191 (518)
T 3ial_A 133 KWVRSYKDLPLKIHQTCTIFRHETKNTKPLIRVREIHWNEAHCCHAT-AEDAVSQLSDYW 191 (518)
T ss_dssp HHCCBGGGCCEEEEEEEEEECTTCCSCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHH
T ss_pred hhhcccccCCeEEEEEeceecCCCCCCCCCceeeEEEEeeEEEEECC-HHHHHHHHHHHH
Confidence 43322 133 38999999999994322 113469999999998665 677777666665
|
| >1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0001 Score=71.44 Aligned_cols=105 Identities=18% Similarity=0.201 Sum_probs=69.0
Q ss_pred HHHHHH--HHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeec--cChHHHHhhhccC--CCceeEEEecceecC
Q 013865 254 VGNIFR--QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLA--QSPQLHKQMSICG--DFGRVFETGPVFRAE 327 (435)
Q Consensus 254 i~~~~r--~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~--~Spql~lq~~i~~--g~~rVfeIgp~FR~E 327 (435)
|.+.+| +.|...||.||.||++-....=.. +.| ++--|+.+.|| ..|.+....+--. .--|.|++|+|||.|
T Consensus 6 le~~~r~~~~~~~~Gy~eI~tP~le~~~l~~~-d~f-~d~~g~~l~LRpd~T~~~a~~~~~~~~~~p~R~~y~g~vfR~e 83 (275)
T 1usy_A 6 FEKVFSFYSKATKKGFSPFFVPALEKAEEPAG-NFF-LDRKGNLFSIREDFTKTVLNHRKRYSPDSQIKVWYADFVYRYS 83 (275)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEECSSCCS-SCE-EETTSCEEEECCCHHHHHHHHHTTCTTCCCEEEECCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEecCccccchhhhcc-ccc-CCCCCCEEEeCCcChHHHHHHHhhcCCCCceEEEEeceEEecC
Confidence 344555 999999999999999976542222 244 34467778887 3344442222111 235999999999999
Q ss_pred CCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 328 DSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 328 ~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
.+.. -||+|+++|+-..++. -+++.++-+++..
T Consensus 84 ~~~~----Ref~Q~g~ei~g~~~~~~DaEvi~l~~~~l~~ 119 (275)
T 1usy_A 84 GSDL----VAEYQLGLEKVPRNSLDDSLEVLEIIVESASE 119 (275)
T ss_dssp TTEE----EEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCC----CeeeEeCEEEecCCCchhHHHHHHHHHHHHHH
Confidence 8633 7999999998765433 3455555555554
|
| >3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00012 Score=76.47 Aligned_cols=116 Identities=13% Similarity=0.151 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----CcceeEeccCCCceeeccChHHHHhhhccC-----
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG----- 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~Spql~lq~~i~~----- 312 (435)
.-.+++.+|++++++.+.++||.||.||.|..... .| +.+.|.+.--+.++||.-..+.-+=.++..
T Consensus 183 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~l~~f~eemf~v~~~~~~~~LipTaE~pl~~l~~~ei~~S 262 (485)
T 3qne_A 183 YGVFLNQALINYGLSFLSSKGYVPLQAPVMMNKEVMAKTAQLSQFDEELYKVIDGEDEKYLIATSEQPISAYHAGEWFES 262 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCEEEECCSEEEHHHHHHHSCHHHHTTTCCEEEETTEEEEECSSTHHHHHHHTTTCEESS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHhhcCCccccccceEEEeCCCCeEEEeccccHHHHHHHhcccccc
Confidence 56788999999999999999999999999986541 11 234666643356789876655443333222
Q ss_pred ---CC-ceeEEEecceecCCCC------CCccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 313 ---DF-GRVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 313 ---g~-~rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
.+ =|+|++++|||+|-+. +.--.-||+|.|.+. |.. -++..+..++|+.
T Consensus 263 ~y~dLPlr~~~~s~cfR~Eag~~Grdt~GL~RvhqF~kvE~~~-f~~-pe~s~~e~e~ml~ 321 (485)
T 3qne_A 263 PAEQLPVRYAGYSSCFRREAGSHGKDAWGIFRVHAFEKIEQFV-LTE-PEKSWEEFDRMIG 321 (485)
T ss_dssp HHHHCCEEEEEEEEEECSCCC-----CCSSSSCSEEEEEEEEE-EEC-GGGHHHHHHHHHH
T ss_pred chhcCCeeEEEecccccCCCCCCCccCCCceeeeeeeeeeEEE-EeC-HHHHHHHHHHHHH
Confidence 12 2799999999999642 212334999999986 443 3555555555554
|
| >1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00019 Score=75.29 Aligned_cols=119 Identities=15% Similarity=0.237 Sum_probs=79.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--------CCCc-ceeEeccC-CCceeeccChHHHH-----hhhc
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--------EGGS-AVFRLDYK-GQSACLAQSPQLHK-----QMSI 310 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--------egga-~~F~v~~~-~~~~~L~~Spql~l-----q~~i 310 (435)
.-.++..+|.+++++.+.+.||.||.||.|..... .-+. +.|.+.-- +.++||+-..+..+ ...+
T Consensus 217 ~GarL~~aL~~~~~d~~~~~Gy~eV~~P~lv~~~l~~~sG~~~~f~e~emf~v~~~~~~~l~L~PTaE~~~~~l~~~~i~ 296 (501)
T 1wle_A 217 AGALLQHGLVNFTLNKLIHRGFTPMTVPDLLRGVVFEGCGMTPNAKPSQIYNIDPSRFEDLNLAGTAEVGLAGYFMDHSV 296 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEEEECCSEECHHHHHHHTCCSSSSSCSSCBBCTTTSSSCEECSSHHHHHHHHHTTEEE
T ss_pred hHHHHHHHHHHHHHHHHHHcCCEEEeCCccccHHHHHhhcCCCccCccccEEEecCCCCeEEECCcCcHHHHHHHhhccC
Confidence 46778888999999999999999999999986431 1123 56666432 46889986665433 2221
Q ss_pred c-CCC-ceeEEEecceecCCC-----CCCccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 311 C-GDF-GRVFETGPVFRAEDS-----YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 311 ~-~g~-~rVfeIgp~FR~E~s-----~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
. ..+ =|+|++|+|||+|-+ .+.--.-||+|.|.+.--....++..+..++|+..
T Consensus 297 s~~~LPlrl~~~s~~FR~Ea~~G~d~~GL~RvhqF~kvE~~~f~~pe~e~s~~~~e~~l~~ 357 (501)
T 1wle_A 297 AFRDLPIRMVCSSTCYRAETDTGKEPWGLYRVHHFTKVEMFGVTGPGLEQSSELLEEFLSL 357 (501)
T ss_dssp EGGGCSEEEEEEEEEECCCCSCC--CCSSSSCSEEEEEEEEEEECSSHHHHHHHHHHHHHH
T ss_pred CcccCCeeEEeccCcccCCCCCCCCCcCceeeeeeeeeeEEEEeCCcHHHHHHHHHHHHHH
Confidence 1 112 389999999999965 11122358999999875443114666666666543
|
| >4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00015 Score=76.39 Aligned_cols=118 Identities=14% Similarity=0.217 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC---CCCCc---ceeEe-ccCCCceeecc--ChHHHHhhhccCC--C
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS---SEGGS---AVFRL-DYKGQSACLAQ--SPQLHKQMSICGD--F 314 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~---~egga---~~F~v-~~~~~~~~L~~--Spql~lq~~i~~g--~ 314 (435)
.-.+++..|.+.+|+.|...||.||.||+|.... ...|. ..|.+ +--|+.+.||- .+.+-.- +.... -
T Consensus 79 ~~~~~~~~ie~~i~~~~~~~Gy~eI~tP~lE~~el~~~~~ge~~~~my~f~D~~g~~l~LRPd~T~~~aR~-~~~~~~~p 157 (517)
T 4g85_A 79 RQMAVREKVFDVIIRCFKRHGAEVIDTPVFELKETLMGKYGEDSKLIYDLKDQGGELLSLRYDLTVPFARY-LAMNKLTN 157 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHHCC------CSCBBCCTTSCCEEECSCSHHHHHHH-HHHTTCSC
T ss_pred HHHHHHHHHHHHHHHHHHHCCCeEEECcccCcHHHhhcccCcCcceeEEEECCCCCEEEeCCcCcHHHHHH-HHhCCCCC
Confidence 4567788999999999999999999999996432 11121 14543 33467777773 2222111 11111 2
Q ss_pred ceeEEEecceecCCCC-CCccccccccceeeeecc-ccH---HHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSY-THRHLCEFTGLDVEMEIK-KHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~-t~rHl~EFt~lE~e~a~~-~~~---~d~m~~~e~li~~ 364 (435)
-|.|+||+|||.|.+. ..-+.-||+|+++|+-.. +.. -+++.++-+++..
T Consensus 158 ~k~yyig~vfR~Erp~~~~GR~ReF~Q~g~ei~G~~~~~~aDaEvi~l~~~~l~~ 212 (517)
T 4g85_A 158 IKRYHIAKVYRRDNPAMTRGRYREFYQCDFDIAGNFDPMIPDAECLKIMCEILSS 212 (517)
T ss_dssp EEEEEEEEEECCCC-------CCEEEEEEEEEESCCCTTHHHHHHHHHHHHHHHH
T ss_pred ceeEEEeceEeccCcccccCccceeeeeceeccCCccchHHHHHHHHHHHHHHHh
Confidence 4899999999999752 222568999999998753 211 2566666665553
|
| >2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00017 Score=76.12 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHH-HhhcCCeEEeeCceeeccC----C---CC-CcceeEec-----c--------------------
Q 013865 246 GIFRIQSQVGNIFRQ-FLLSENFVEIHTPKLIAGS----S---EG-GSAVFRLD-----Y-------------------- 291 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~-fl~~~gF~EV~TP~l~~~~----~---eg-ga~~F~v~-----~-------------------- 291 (435)
.-.+++..|.+.+++ ++...||.||.||+|.... + ++ +-+.|.+. .
T Consensus 229 ~G~~L~~~L~~~~~~e~~~~~G~~EV~tP~L~~~el~~~SGh~~~F~demy~v~~~~~Rd~~~~e~~~~~~~~~~~~~~~ 308 (522)
T 2cja_A 229 QSARIFRTFEKIVLEELLEPLGYREMIFPKLVTWEVWMKSGHAKGVYPEIYYVCPPQTRDPDYWEEVADYYKVTHEVPTK 308 (522)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECBCCSEEEHHHHHHHTGGGTCGGGCCEEECBSCCCHHHHHHHHHHHHHHSSCCHH
T ss_pred hHHHHHHHHHHHHHHHHHHHcCCEEEECCCcccHHHHhhcCCcCccccceeeeecCCccchhhhhhhhhhhhcccccccc
Confidence 456678899999996 6889999999999998643 1 11 12345552 0
Q ss_pred ------CCCceeeccChH-----HHHhhhccC-CCc-eeEE-EecceecCCC--CCCccccccccceeeeeccccHHHHH
Q 013865 292 ------KGQSACLAQSPQ-----LHKQMSICG-DFG-RVFE-TGPVFRAEDS--YTHRHLCEFTGLDVEMEIKKHYSEVM 355 (435)
Q Consensus 292 ------~~~~~~L~~Spq-----l~lq~~i~~-g~~-rVfe-Igp~FR~E~s--~t~rHl~EFt~lE~e~a~~~~~~d~m 355 (435)
-+.++||+-..+ +|....... .+. |+|+ ||+|||+|.. +..--.-||+|.|++. |.+ .++..
T Consensus 309 ~~~~~~~~~~l~LrPt~e~~i~~~f~~~i~s~~~LPlrl~q~ig~~FR~Epgs~~GL~R~REF~q~E~~~-F~~-pe~s~ 386 (522)
T 2cja_A 309 LIKEKIAEPIGGMCYAQCPPFWMYVAGETLPNEEIPVKVFDRSGTSHRYESGGIHGIERVDEFHRIEIVW-IGT-KEEVL 386 (522)
T ss_dssp HHHHHBCCCCEEECSSSSGGGGGGTTTCEECGGGCSEEEEECSSEEECCCSSSCCCTTSCSEEEEEEEEE-EEE-HHHHH
T ss_pred ccccccCCCcEEEccCCcHHHHHHHHhcccccccCCeeEEEEcCceEeCCCCCCCCCeEeEEEEEeeEEE-EeC-hHHHH
Confidence 246788885443 222221211 122 8999 9999999943 2223456999999998 664 67777
Q ss_pred HHHHHHH
Q 013865 356 DIVDRLF 362 (435)
Q Consensus 356 ~~~e~li 362 (435)
+..++++
T Consensus 387 ee~ee~i 393 (522)
T 2cja_A 387 KCAEELH 393 (522)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777777
|
| >4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00015 Score=76.42 Aligned_cols=117 Identities=12% Similarity=0.063 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---C-CCc-----ceeEeccC-----CCceeeccChH-----HHH
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---E-GGS-----AVFRLDYK-----GQSACLAQSPQ-----LHK 306 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---e-gga-----~~F~v~~~-----~~~~~L~~Spq-----l~l 306 (435)
.-++++..|.+.+++.+.+.||.||.||+|..... + |.. +.|.+..- +.+++|+--.+ +|.
T Consensus 59 ~G~~i~~~L~~~~~~~~~~~Gy~ev~tP~l~~~~l~~k~sGh~~~f~~emy~~~d~g~~~l~e~l~LrPtse~~i~~~~~ 138 (519)
T 4hvc_A 59 WAYAIWEAIKDFFDAEIKKLGVENCYFPMFVSQSALEKEKTHVADFAPEVAWVTRSGKTELAEPIAIRPTSETVMYPAYA 138 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHTTSCCSCGGGGGGCEEEEEETTEEEEEEEEECSSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHcCCEEEeccccccHHHHhcccCCcccccccceEEeccCCcccccceeeCCCCcHHHHHHHH
Confidence 45677889999999999999999999999975431 1 211 24544321 23588875432 455
Q ss_pred hhhcc-CCC-ceeEEEecceecCCCCCC--ccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 307 QMSIC-GDF-GRVFETGPVFRAEDSYTH--RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 307 q~~i~-~g~-~rVfeIgp~FR~E~s~t~--rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
+.... .++ =|+|++|+|||.|-+.++ .=.-||+|.|.+..|.+ .++....++.++.
T Consensus 139 ~~i~SyrdLPlrl~q~g~~fR~E~~~~~Gl~R~ReF~q~e~h~~~~~-~e~a~~E~~~~l~ 198 (519)
T 4hvc_A 139 KWVQSHRDLPIKLNQWCNVVRWEFKHPQPFLRTREFLWQEGHSAFAT-MEEAAEEVLQILD 198 (519)
T ss_dssp HHCSSGGGCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHHH
T ss_pred hhccccccCCeEEEEEcCeeeCCCCCCCCCcceeEEEEeeEEEEecC-HHHHHHHHHHHHH
Confidence 53322 123 389999999999943221 12359999999998875 6666666555543
|
| >3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00093 Score=66.64 Aligned_cols=118 Identities=14% Similarity=0.080 Sum_probs=81.3
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-CC-C------cceeEeccC------------------------
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-G------SAVFRLDYK------------------------ 292 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-eg-g------a~~F~v~~~------------------------ 292 (435)
....+++..|.+++++ ..+.||.||.||.|..... ++ | -+.|.+.-|
T Consensus 61 g~~a~L~~aLe~~~~~-~~~~Gy~ev~~P~lv~~~~~e~SGhl~~F~e~mf~v~~~~~d~~e~~~ll~~~~~~~~~~~~l 139 (346)
T 3mf2_A 61 ALYESIVERLAALITS-HREAGTEALRFPPVMSRAQLEKSGYLKSFPNLLGCVCGLHGTEREINAAVSRFDAGGDWTTSL 139 (346)
T ss_dssp HHHHHHHHHHHHHHHH-TCCTTCEEEECCSEEEHHHHHHTTHHHHCGGGCEEEEEECSCHHHHHHHHHHHHTTSCGGGGE
T ss_pred chHHHHHHHHHHHHHh-hHhcCCeEEECCCccCHHHHHhcCCcccChhhcceeecccccchhhhhhhhhhcccccccccc
Confidence 4667788899999999 9899999999999985431 11 1 124555322
Q ss_pred -CCceeeccCh-----HHHHhh-hccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHH
Q 013865 293 -GQSACLAQSP-----QLHKQM-SICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 293 -~~~~~L~~Sp-----ql~lq~-~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i 365 (435)
+.++||.-.. ++|... .+...=-|+..+|+|||.|.|.+.-.+-+|+|.|+-. |. .-+++.+..++|+..+
T Consensus 140 ~~~d~~LiPtacvpl~~~~~~eg~i~~~plr~~~~g~CFR~EaS~GL~RvhqF~kvE~v~-~~-tpEqs~~e~e~l~~~a 217 (346)
T 3mf2_A 140 SPADLVLSPAACYPVYPIAASRGPLPKGGLRFDVAADCFRREPSKHLDRLQSFRMREYVC-IG-TPDDVSDFRERWMVRA 217 (346)
T ss_dssp EEEEEEECSSSSTTHHHHHHTTCSCCTTCEEEEEEEEEECCCCCSSTTSCSEEEEEEEEE-EE-SHHHHHHHHHHHHHHH
T ss_pred CCCCEEEcccccHHHHHHHccCCcccccCeEEEEECCccCCcCCCCCeeeeeeEEEEEEE-Ee-CHHHHHHHHHHHHHHH
Confidence 2367887544 455532 2333324666799999999987777888999998754 33 3677777777777653
|
| >1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00081 Score=70.69 Aligned_cols=34 Identities=3% Similarity=0.030 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHhh--cCCeEEeeCceeeccC
Q 013865 246 GIFRIQSQVGNIFRQFLL--SENFVEIHTPKLIAGS 279 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~--~~gF~EV~TP~l~~~~ 279 (435)
.=.+++..|.+.+|+.+. ..||.||.||+|....
T Consensus 37 ~G~~l~~~l~~~~r~~~~~~~~g~~ev~tP~l~~~~ 72 (505)
T 1ati_A 37 LGVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRL 72 (505)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEETT
T ss_pred cHHHHHHHHHHHHHHHHHHhhCCcEEEEccccCCHH
Confidence 346778899999999999 8999999999998653
|
| >2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.04 E-value=0.002 Score=67.94 Aligned_cols=50 Identities=14% Similarity=0.244 Sum_probs=40.9
Q ss_pred eeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 316 RVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
|+||+|+|||.+...+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 219 rlFEiGrVFr~D~~~d~th~~ef~qLaglv~G~~vdF~DLKG~Le~ll~~L 269 (549)
T 2du7_A 219 KLFSIDRCFRREQREDRSHLMSYHSASCVVVGEDVSVDDGKVVAEGLLAQF 269 (549)
T ss_dssp EEEEEEEECCCCSSCSSSCCSCEEEEEEEEECTTCCHHHHHHHHHHHHGGG
T ss_pred EEEEEeeEEecCCcccCcCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 899999999986531346999999999988774 24889999999998866
|
| >2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0015 Score=68.86 Aligned_cols=51 Identities=12% Similarity=0.173 Sum_probs=41.8
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+||||+|||.+..-+..|.+||++++..+... .++.|+..+++.++..+
T Consensus 206 vrLFEIG~VFr~d~~~d~th~~Ef~qLagli~G~~vdf~dLKgilE~LL~~L 257 (534)
T 2du3_A 206 IKLFSIDRCFRREQGEDATRLYTYFSASCVLVDEELSVDDGKAVAEALLRQF 257 (534)
T ss_dssp EEEEEEEEEECCCTTCSSSCCSEEEEEEEEEECSSCCHHHHHHHHHHHHGGG
T ss_pred eeEEEEeeEEecCccccccccceeeEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 3899999999986521567999999999998873 24889999999998865
|
| >3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A | Back alignment and structure |
|---|
Probab=96.95 E-value=0.0027 Score=65.09 Aligned_cols=88 Identities=13% Similarity=0.175 Sum_probs=56.4
Q ss_pred HHHHHHHHhhcC--------CeEEeeC-ceeeccC--------CCCC-cc-eeEeccCCCceeecc--ChHHHHhhhccC
Q 013865 254 VGNIFRQFLLSE--------NFVEIHT-PKLIAGS--------SEGG-SA-VFRLDYKGQSACLAQ--SPQLHKQMSICG 312 (435)
Q Consensus 254 i~~~~r~fl~~~--------gF~EV~T-P~l~~~~--------~egg-a~-~F~v~~~~~~~~L~~--Spql~lq~~i~~ 312 (435)
+...||++|... ||.|+.+ |.+.+.. ...+ |. .-.+-|++....||. ||-+..- +..
T Consensus 53 ~~~~i~~~f~~~~~~~~g~~Gf~e~~~~~~v~s~~~NFd~L~~p~dHpaR~~~Dtfyi~~~~vLRThts~~~~~~--l~~ 130 (415)
T 3cmq_A 53 IKERVKEHFYKQYVGRFGTPLFSVYDNLSPVVTTWQNFDSLLIPADHPSRKKGDNYYLNRTHMLRAHTSAHQWDL--LHA 130 (415)
T ss_dssp HHHHHHHHHHHHHHHCSSSCCCEEECCCCSEEEHHHHTGGGTCCTTCGGGCGGGSCBSSSSEEECSSGGGGHHHH--HHT
T ss_pred HHHHHHHHHHhhhccccCCCCcEEEcCCCccccHHHHHHHhCCCCCCCcccccceEEecCCeEEcCCCcHHHHHH--HHH
Confidence 444555555554 8999999 6665321 1111 11 111225667777874 4544433 345
Q ss_pred CCceeEEEecceecCCCCCCccccccccceee
Q 013865 313 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344 (435)
Q Consensus 313 g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e 344 (435)
+..|+|++|.|||.+.. +..|.|.|.++|--
T Consensus 131 ~~~k~~~~G~VyR~D~~-da~h~n~fhQ~egv 161 (415)
T 3cmq_A 131 GLDAFLVVGDVYRRDQI-DSQHYPIFHQLEAV 161 (415)
T ss_dssp TCSEEEEEEEEECCCCC-BTTBCSEEEEEEEE
T ss_pred CCCCEEEeeeEEeccch-hhhhhHHhcCCCcE
Confidence 67799999999999974 78999999999943
|
| >2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0016 Score=70.88 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHhh-cCCeEEeeCceeec
Q 013865 246 GIFRIQSQVGNIFRQFLL-SENFVEIHTPKLIA 277 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~-~~gF~EV~TP~l~~ 277 (435)
.=.+++..|.+.+|+.|. ..||.||.||+|.+
T Consensus 99 ~G~~l~~~Ie~~~r~~~~~~~g~~EV~tP~l~~ 131 (693)
T 2zt5_A 99 VGCALKNNIIQTWRQHFIQEEQILEIDCTMLTP 131 (693)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHTCEECCCCSEEE
T ss_pred ChHHHHHHHHHHHHHHHHHhcCcEEEEeCCccc
Confidence 346788899999999998 56999999999985
|
| >2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0041 Score=66.32 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=41.6
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+||||+|||++..-+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (648)
T 2odr_B 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (648)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4899999999986521567999999999988763 24889999999999865
|
| >2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0075 Score=50.30 Aligned_cols=89 Identities=15% Similarity=0.213 Sum_probs=63.5
Q ss_pred EEeccccCCCCCCEEEEEEEEeee-------ecCC--CceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEE
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTT-------RPVG--NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~-------R~~G--~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV 163 (435)
..|.+|. .|+.|.+.|+|.++ +..| +++.++.|.|+++.|.+.+-.... .....+..|++|
T Consensus 8 ~~I~~L~---~g~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG~I~~t~w~~~~-------~~~~~l~~G~vv 77 (115)
T 2k50_A 8 DTISKLE---EGAETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTGELRAVFWTENI-------KLLKKFREGDVI 77 (115)
T ss_dssp CCTTTCC---TTCEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTEEEEEEEETTGG-------GGGGTCCTTSEE
T ss_pred EEHHHCC---CCCEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCCeEEEEEeCchh-------hhhhcCCCCCEE
Confidence 4466664 48899999999998 2345 578999999999999999874311 112579999999
Q ss_pred EEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 164 ~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
.|.|.+.... =.|.++|.+.+...+.++
T Consensus 78 ~i~g~~v~~~-----f~g~~qL~~~~~~~i~~~ 105 (115)
T 2k50_A 78 RIKDVNIRGG-----FGGRKEAHLMPRSTVEVL 105 (115)
T ss_dssp EEEEEEECCC-----SSSSCEEEECTTCCEEEE
T ss_pred EEEeeEEccc-----cCCeEEEEECCCceEEEC
Confidence 9999885321 114578887766555544
|
| >2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0044 Score=66.25 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=41.6
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+||||+|||++..-+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vdF~DLKGvLE~LL~~L 276 (665)
T 2odr_A 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (665)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4899999999986521567999999999988763 24889999999999865
|
| >2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0045 Score=66.24 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=41.7
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+||||+|||++...+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~Ef~qLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (685)
T 2odr_D 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (685)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEeccEEecCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4899999999986521567999999999988763 24889999999999865
|
| >2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0052 Score=65.94 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=41.6
Q ss_pred ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 315 GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 315 ~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
-|+||||+|||.+..-+.+|.+||.+++.-+... -++.|+...++.++..+
T Consensus 225 vRLFEIGrVFR~D~~lDath~~EfhqLeGlv~G~~vDF~DLKGvLE~LL~~L 276 (701)
T 2odr_C 225 FKLFSIDRCFRREQKEDKSHLMTYHSASCAIAGEGVDINDGKAIAEGLLSQF 276 (701)
T ss_dssp EEEEEEEEEECCCSCCCSSCCSEEEEEEEEEECTTCCHHHHHHHHHHHHHTT
T ss_pred eEEEEEeeEEccCccccccCCCcceEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 4899999999986521567999999999988763 24889999999999865
|
| >3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0057 Score=63.41 Aligned_cols=91 Identities=11% Similarity=0.075 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHH-HHhhcCC-eEEeeCceeeccCCCCCcceeEeccCCCceeecc-ChHHHHhh----hcc--CCC-cee
Q 013865 248 FRIQSQVGNIFR-QFLLSEN-FVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQ-SPQLHKQM----SIC--GDF-GRV 317 (435)
Q Consensus 248 ~~~rs~i~~~~r-~fl~~~g-F~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~-Spql~lq~----~i~--~g~-~rV 317 (435)
..+|+.|.+.+| .|...+| +.||.||+....-.-|+-+.|. +||+- +-|-.... +.. ..+ =|+
T Consensus 104 ~~l~~nl~~~w~~~~~~~~~~~~eV~tp~~~~~~~SGH~d~~~-------~~LRPeTaqg~~~nfk~~~~s~r~~LP~~i 176 (459)
T 3ikl_A 104 VELRKNLAAEWWTSVVVFREQVFPVDALHHKPGPLLPGDSAFR-------GGLRENLLHGALEHYVNCLDLVNKRLPYGL 176 (459)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSCEECCCCSBCCSCCCSSCSCCT-------TB-CSCSHHHHHHHTTTTTGGGTTBSSEEE
T ss_pred HHHHHHHHHHHHHHHhhccCceEeeccccccccccCcchhhhc-------ceECCCCChhHHHHHhhhhhhccccCCeEE
Confidence 467888997454 4445466 7779999865433445544444 77875 22222221 111 122 269
Q ss_pred EEEecceecCCC-CCCcc----ccccccceeee
Q 013865 318 FETGPVFRAEDS-YTHRH----LCEFTGLDVEM 345 (435)
Q Consensus 318 feIgp~FR~E~s-~t~rH----l~EFt~lE~e~ 345 (435)
.+||+|||+|.. .+.+| .-|||+.|.+.
T Consensus 177 aqig~~FR~E~g~~~~~~GL~RvrEFtq~E~~~ 209 (459)
T 3ikl_A 177 AQIGVCFHPVFDTKQIRNGVKSIGEKTEASLVW 209 (459)
T ss_dssp EEEEEEECCC----------CCCCEEEEEEEEE
T ss_pred EEEeeeeecccccccCCCCcccccceeeeeEEE
Confidence 999999999941 23333 36999999973
|
| >3kf6_A Protein STN1; OB fold, chromosomal protein, DNA-binding, nucleus, telomere; 1.65A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.038 Score=49.22 Aligned_cols=80 Identities=15% Similarity=0.157 Sum_probs=61.5
Q ss_pred CEEEEEEEEeeeecCCCceEEEEEEeCCe-EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeE
Q 013865 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~l 183 (435)
+.|.|.|.|.+++... +-.+|.|-|++| .|.|++-.+.. ...-.....+..|++|.|.|.|..- .++.
T Consensus 48 ~~V~IvGiVv~~~~~~-~~~~ytIDD~TG~~I~cv~w~~~~---~~~~~~~~~l~~G~~VrV~G~v~~f-------r~~r 116 (159)
T 3kf6_A 48 RWIQIVGYIAAIDIYE-GKHVLTVDDCSGMVLRVVFIIQDD---FSMSKRAISMSPGNVVCVFGKINSF-------RSEV 116 (159)
T ss_dssp CEEEEEEEEEEEEEET-TEEEEEEECSSSCEEEEEEEGGGC---HHHHHHHTTCCTTCEEEEEEEEECS-------SSSC
T ss_pred EEEEEEEEEEEEEEeC-CEEEEEEecCCCCeEEEEEEccCC---CCcccccccCCCCCEEEEEEEEEee-------CCEE
Confidence 5799999999999887 447789999988 69999986532 1111223468999999999999642 2568
Q ss_pred EEEEeEEEEeec
Q 013865 184 EVQIKKLYCVSR 195 (435)
Q Consensus 184 Ei~v~~i~vls~ 195 (435)
+|.+.++.++..
T Consensus 117 qI~~~~i~~v~d 128 (159)
T 3kf6_A 117 ELIAQSFEELRD 128 (159)
T ss_dssp EEEEEEEEEECS
T ss_pred EEEEEEEEECCC
Confidence 999999999864
|
| >1ynx_A Replication factor-A protein 1; canonical OB fold, DNA binding protein; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.021 Score=47.86 Aligned_cols=97 Identities=16% Similarity=0.136 Sum_probs=67.4
Q ss_pred ceEEeccccCCCCCCEEEEEEEEeee---------ecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCc
Q 013865 91 EWTVVGALNGSLKDQEVLIRGRVHTT---------RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNES 161 (435)
Q Consensus 91 ~~~~i~~l~~~~~g~~V~v~GrV~~~---------R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~es 161 (435)
.++.|.+|.+... ..+|+|||.++ +..| ++.=++|.|..+.|++++.. ...-+|...|..|+
T Consensus 3 ~~~~Is~L~p~~~--~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~------~~~~~f~~~l~eG~ 73 (114)
T 1ynx_A 3 PIFAIEQLSPYQN--VWTIKARVSYKGEIKTWHNQRGDG-KLFNVNFLDTSGEIRATAFN------DFATKFNEILQEGK 73 (114)
T ss_dssp CBCCGGGCCTTTC--CCEEEEEEEEEEEEEEEECSSCEE-EEEEEEEEETTEEEEEEECH------HHHHHHHHHSCSSS
T ss_pred ceEEHHHCCCCCC--ceEEEEEEEEeccceEEecCCCCc-eEEEEEEECCCCeEEEEECH------HHHHHHHhhcccCc
Confidence 4567777766432 47888888853 2235 77778899999999999863 23345778899999
Q ss_pred EEEEEEEEecC-CcccCCCceeEEEEEeEEEEeecC
Q 013865 162 IVDVIGVVSVP-DVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 162 iV~V~G~v~~~-~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
++.|.|--..+ .+.-+...+.+||....-..+.+|
T Consensus 74 vy~Is~~~V~~a~~~y~~~~~~yei~f~~~T~I~~~ 109 (114)
T 1ynx_A 74 VYYVSKAKLQPAKPQFTNLTHPYELNLDRDTVIEEC 109 (114)
T ss_dssp EEEEESCEEEECCTTTSSSSSCEEEEECSSCEEEES
T ss_pred EEEECCcEEEECCCCcccCCCCEEEEECCCCEEEEC
Confidence 99999744333 322223346799999887777776
|
| >3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.092 Score=43.37 Aligned_cols=89 Identities=15% Similarity=0.184 Sum_probs=66.2
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeeee-------cCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCC
Q 013865 90 REWTVVGALNGSLKDQEVLIRGRVHTTR-------PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNE 160 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~R-------~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~e 160 (435)
.++.+|++|.+ |..|.|.|+|.++- ..|+ ++.=+.|.|.++.|.+++=.+.. + ..+.+|
T Consensus 3 ~~~~~I~dL~~---~~~v~v~g~V~~~~~~r~~~~~~G~~~~v~~~~l~D~TG~IrvtlW~~~a----~-----~~l~~G 70 (105)
T 3dm3_A 3 KDTYNIGELSP---GMTATFEGEVISALPIKEFKRADGSIGKLKSFIVRDETGSIRVTLWDNLT----D-----IDVGRG 70 (105)
T ss_dssp -CEECGGGCCS---SEEEEEEEEEEEEEEEEEEECTTSCEEEEEEEEEEETTEEEEEEEEGGGG----G-----SCCCTT
T ss_pred ccceEHHHCCC---CCeEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECccc----c-----cccCCC
Confidence 35677888876 47899999998863 2342 45558889999999998753211 0 169999
Q ss_pred cEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 161 SIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 161 siV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
++|.|.|.++... .+.+||++.....+.+|
T Consensus 71 dvv~i~g~vk~~~------~g~~eL~~g~~~~i~~~ 100 (105)
T 3dm3_A 71 DYVRVRGYIREGY------YGGLECTANYVEILKKG 100 (105)
T ss_dssp CEEEEEEEEEECT------TSSEEEEEEEEEEEECC
T ss_pred CEEEEEEEEEEcc------CCCEEEEeCCceEEEec
Confidence 9999999886532 25799999999999888
|
| >1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* | Back alignment and structure |
|---|
Probab=96.10 E-value=0.013 Score=60.79 Aligned_cols=116 Identities=9% Similarity=0.031 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHH-h-hcCCeEEeeCceeeccCCCCC--------ccee---------------Ee--ccCCCceeec
Q 013865 247 IFRIQSQVGNIFRQF-L-LSENFVEIHTPKLIAGSSEGG--------SAVF---------------RL--DYKGQSACLA 299 (435)
Q Consensus 247 i~~~rs~i~~~~r~f-l-~~~gF~EV~TP~l~~~~~egg--------a~~F---------------~v--~~~~~~~~L~ 299 (435)
=..++..|.+++++. + ...|+.||.||+|.+...-.+ ++-+ .+ .+++.++||+
T Consensus 61 G~~l~~~i~~~~~~~~~~~~~g~~ev~tp~l~~~~~~~~s~~g~~~r~d~~~e~~~~~g~~~eem~~~~~~~~~~~~~LR 140 (454)
T 1g5h_A 61 GVELRKNLASQWWSSMVVFREQVFAVDSLHQEPGSSQPRDSAFRLVSPESIREILQDREPSKEQLVAFLENLLKTSGKLR 140 (454)
T ss_dssp HHHHHHHHHHHHHHHHTTTCTTEEECCCCSEECCCCSSCCCCCEEECHHHHHHHHCC---CHHHHHHHHHHHHHHSCEEC
T ss_pred HHHHHHHHHHHHHHHHhhhcCCeEEEEcCccCChhhccccccCcccHHHHHHHHhhccCCCHHHHHHHHHhhcCcceeec
Confidence 356788899988876 4 589999999999986542111 1111 11 2345677888
Q ss_pred c--ChHH---HHhhhccC--CC-ceeEEEeccee---cCCCC--CCccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 300 Q--SPQL---HKQMSICG--DF-GRVFETGPVFR---AEDSY--THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 300 ~--Spql---~lq~~i~~--g~-~rVfeIgp~FR---~E~s~--t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
- +|-. |+..+-.. .+ =++++||+||| ||-+- ...=.-||||.|.+. |.+ .++..+..+.++..
T Consensus 141 Peta~g~~~~f~~~~~s~r~~LP~~~aqig~~fR~~~nE~s~~~Gl~R~REF~q~E~~~-F~~-pe~~~e~~~~~~~~ 216 (454)
T 1g5h_A 141 ATLLHGALEHYVNCLDLVNRKLPFGLAQIGVCFHPVSNSNQTPSSVTRVGEKTEASLVW-FTP-TRTSSQWLDFWLRH 216 (454)
T ss_dssp SCSHHHHHHTHHHHHHHTTTBSCEEEEEEEEEEEEEC---------CEEEEEEEEEEEE-EEC-HHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHhhhHhhcccCCCEEEEEeeeeccCCcccccCCCCccccCceehhheEE-EeC-HhhHHHHHHHHHHH
Confidence 4 2222 22222111 34 38999999999 69641 112357999999985 553 66666655555443
|
| >3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B | Back alignment and structure |
|---|
Probab=95.61 E-value=0.09 Score=44.95 Aligned_cols=79 Identities=14% Similarity=0.147 Sum_probs=56.6
Q ss_pred CEEEEEEEEeeeecCCCceEEEEEEeCCe-EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeE
Q 013865 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~l 183 (435)
..|++-|+|.++......+. +.|.|++| .|.|..-...+..+ .-...+..|++|.|.|.++.- .+..
T Consensus 32 ~~V~iVG~V~~~~~~~~~~~-~~ldD~TG~~I~~~~W~~~~~~~----~~~~~~~~g~yVrV~G~l~~f-------~g~~ 99 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPTNIV-YKIDDMTAAPMDVRQWVDTDDTS----SENTVVPPETYVKVAGHLRSF-------QNKK 99 (132)
T ss_dssp CEEEEEEEEEEEEECSSEEE-EEEECSSSSCEEEEEEC-------------CCCCTTCEEEEEEEEEEE-------TTEE
T ss_pred EEEEEEEEEEEEEEcCCeEE-EEEECCCCCEEEEEEEccCCCcc----cccccccCCCEEEEEEEEEeE-------CCEE
Confidence 47999999999998875644 68999999 99999865322111 113579999999999998642 1457
Q ss_pred EEEEeEEEEeec
Q 013865 184 EVQIKKLYCVSR 195 (435)
Q Consensus 184 Ei~v~~i~vls~ 195 (435)
.|.+..|..+..
T Consensus 100 qi~~~~ir~v~d 111 (132)
T 3kdf_D 100 SLVAFKIMPLED 111 (132)
T ss_dssp EEEEEEEEECSS
T ss_pred EEEEEEEEEcCC
Confidence 788888877643
|
| >3e0e_A Replication protein A; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 1.60A {Methanococcus maripaludis} PDB: 2k5v_A | Back alignment and structure |
|---|
Probab=95.58 E-value=0.19 Score=40.65 Aligned_cols=83 Identities=13% Similarity=0.194 Sum_probs=59.3
Q ss_pred EeccccCCCCCCEEEEEEEEeeee-------cCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHh-cCCCCcEE
Q 013865 94 VVGALNGSLKDQEVLIRGRVHTTR-------PVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR-SLSNESIV 163 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R-------~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~-~l~~esiV 163 (435)
+|.+|.+ |..|.|.|+|.++- ..|. ++.=+.|.|++++|-+++-.+. +. .+..||+|
T Consensus 4 kI~dl~~---g~~v~i~~~V~~~~~~r~~~~~~G~~~~v~~~~l~DeTG~I~~tlW~~~----------~~~~i~~Gdvv 70 (97)
T 3e0e_A 4 KISELMP---NLSGTINAEVVTAYPKKEFSRKDGTKGQLKSLFLKDDTGSIRGTLWNEL----------ADFEVKKGDIA 70 (97)
T ss_dssp CGGGCCT---TEEEEEEEEEEEECCCEEEC----CCEEEEEEEEEETTEEEEEEEEGGG----------GGCCCCTTCEE
T ss_pred EHHHCCC---CCcEEEEEEEEECCCceEEEcCCCCeeEEEEEEEECCCCcEEEEEECCc----------cccccCCCCEE
Confidence 4666654 57899999998863 2342 4566888999999999976321 12 69999999
Q ss_pred EEEEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 164 ~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
.|.|.+..- .+.+||++.+.-.+.+|
T Consensus 71 ~i~g~v~~~-------~~~~el~~g~~~~i~k~ 96 (97)
T 3e0e_A 71 EVSGYVKQG-------YSGLEISVDNIGIIEKS 96 (97)
T ss_dssp EEEEEEEEC---------CEEEEEEEEEEEECC
T ss_pred EEEEEEEEc-------CCeEEEEECCCcEEEEC
Confidence 999987542 24799999988777654
|
| >3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.057 Score=50.03 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=68.2
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCC-C-----CCcceeEe-ccC-CCceeeccChHHHHhhhccC----CCc--eeE
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS-E-----GGSAVFRL-DYK-GQSACLAQSPQLHKQMSICG----DFG--RVF 318 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~-e-----gga~~F~v-~~~-~~~~~L~~Spql~lq~~i~~----g~~--rVf 318 (435)
.+.+.+|+.|...||.||-|-.+++... + +......+ |-. ..--.||+|-=--+=..+.- +.. |+|
T Consensus 8 ~~~~~ir~~l~~~G~~Evitysf~~~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~v~lF 87 (213)
T 3ig2_A 8 KLQNLVAEQLVGCGFNEILNNSLTRAAYYDGLESYPSKNLVMLLNPLSADLNCMRQTLLFGGLESIAHNANRKNADLKFF 87 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECGGGGTTCSSSCGGGCEEBSSGGGCSCCEECSCSHHHHHHHHHHC------CCEEE
T ss_pred HHHHHHHHHHHHCCCeEEeccccCCHHHHHhhcccCcCCeEEEeCCcchhHHHHHHHhHHHHHHHHHHHhcCCCCCeeEE
Confidence 5678899999999999999999986431 1 11123333 222 23457887743332223322 232 899
Q ss_pred EEecceecCCCCC-----Cccccccccceeeeecc------------ccHHHHHHHHHHHHHHH
Q 013865 319 ETGPVFRAEDSYT-----HRHLCEFTGLDVEMEIK------------KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 319 eIgp~FR~E~s~t-----~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~li~~i 365 (435)
|||+||+.+.... ..+..|..+|-.-+... -++.|+...+|.++..+
T Consensus 88 EiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~dlKg~ve~ll~~l 151 (213)
T 3ig2_A 88 EFGNCYHFDAEKKNPEKVLAPYSEDYHLGLWVTGKMVSNSWAHADENTSVYELKAYVENIFKRL 151 (213)
T ss_dssp EEEEEEEECC----------CEEEEEEEEEEEEEEECCSCC----CHHHHHHHHHHHHHHHHHT
T ss_pred EeeeEEecCcccccccccccccchhHEEEEEEECCCccccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 9999999765211 12345777777765541 13778888888877665
|
| >3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.049 Score=58.18 Aligned_cols=112 Identities=13% Similarity=0.138 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccC--------CCCCcceeEe-ccCC-CceeeccChHHHHhhhccC----C-Ccee
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGS--------SEGGSAVFRL-DYKG-QSACLAQSPQLHKQMSICG----D-FGRV 317 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~--------~egga~~F~v-~~~~-~~~~L~~Spql~lq~~i~~----g-~~rV 317 (435)
.+.+.+|+.|...||.||.|+.+++.. ..++...+.+ |-.. .--.||+|-=--+=..+.. + -=|+
T Consensus 395 ~~~~~ir~~l~~~Gf~Evitysf~s~~~~~~~l~~~~~~~~~v~L~NPis~e~svmRtsLlpgLL~~l~~N~~~~~~vrl 474 (589)
T 3l4g_B 395 KLTELLRHDMAAAGFTEALTFALCSQEDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKL 474 (589)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECHHHHTGGGTSCTTSSCCCBBSSCSSGGGSEECSCSHHHHHHHHHHTTTSCSCEEE
T ss_pred HHHHHHHHHHHHCCCEEEecCcccCHHHHHHHhCCCCCCCCeEEEcCCCchhHhHHHHHHHHHHHHHHHHHhcCCCceEE
Confidence 357789999999999999999998542 1112233433 2222 2356777632222112221 1 2389
Q ss_pred EEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHH
Q 013865 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 318 feIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i 365 (435)
||+|+|||.... +.+|.+|+.++..-+... .++.++-..++.++..+
T Consensus 475 FEiG~Vf~~d~~-~~~~~~e~~~la~~~~g~~~~f~~lkg~le~ll~~l 522 (589)
T 3l4g_B 475 FEISDIVIKDSN-TDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLL 522 (589)
T ss_dssp EEEEEEEEECTT-STTSEEEEEEEEEEEESSSCCHHHHHHHHHHHHHHT
T ss_pred EEeeeEEecCCc-cccCCccccEEEEEEECCCCCHHHHHHHHHHHHHHc
Confidence 999999998763 457888999998766542 24777777777776654
|
| >3au7_A TIAS, putative uncharacterized protein; ATP hydrolysis, RNA binding protein; 2.60A {Archaeoglobus fulgidus} PDB: 3amt_A* 3amu_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.19 Score=51.05 Aligned_cols=80 Identities=23% Similarity=0.359 Sum_probs=64.0
Q ss_pred CCCCCEEEEEEEEeee--ecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCC
Q 013865 101 SLKDQEVLIRGRVHTT--RPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~--R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (435)
-.....++|+|.|.+. +..| .=+|+.|.|+++.|.|++-.. ++.+-+.+..|..||.|.|.|-++.
T Consensus 281 ~~~~~~~~v~G~V~~~P~~~~G-GHV~f~l~d~~~~i~c~ayep----tk~fr~~vr~L~~GD~V~v~G~v~~------- 348 (402)
T 3au7_A 281 LENYRSYRLRGRVTLEPYDIEG-GHVFFEIDTKFGSVKCAAFEP----TKQFRNVIRLLRKGDVVEVYGSMKK------- 348 (402)
T ss_dssp CCTTCEEEEEEEEEEEEEEETT-TEEEEEEEETTEEEEEEECGG----GTTHHHHHTTCCTTCEEEEEEEEET-------
T ss_pred cccCceEEEEEEEecCcEeccC-ceEEEEEEcCCCEEEEEEEcc----chHHHHHHhcCCCCCEEEEEEeecC-------
Confidence 3456899999999987 4455 448899999999999999752 3455667789999999999999754
Q ss_pred CceeEEEEEeEEEEeecC
Q 013865 179 ATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 179 ~t~~lEi~v~~i~vls~~ 196 (435)
+ .|.++++.+++-+
T Consensus 349 --g--tLnvEk~~v~~l~ 362 (402)
T 3au7_A 349 --D--TINLEKIQIVELA 362 (402)
T ss_dssp --T--EEEEEEEEEEECC
T ss_pred --C--EEEEEEEEEcccC
Confidence 2 6899999999764
|
| >4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=95.10 E-value=0.16 Score=43.66 Aligned_cols=79 Identities=11% Similarity=0.112 Sum_probs=56.3
Q ss_pred CEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEE
Q 013865 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVE 184 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lE 184 (435)
..|++-|+|.+++.....+. +.|.|+++.|.|..=......+ ..-...+..|++|.|.|.+..- .+...
T Consensus 37 ~~V~iVG~V~~~~~~~~~~~-~~ldD~TG~I~~~~W~~~~~~~---~~~~~~~~~g~yVrV~G~v~~f-------~g~~q 105 (136)
T 4gop_B 37 GQLTFVAVVRNISRNATNVA-YSVEDGTGQIEVRQWLDSSSDD---SSKASEIRNNVYVRVLGTLKSF-------QNRRS 105 (136)
T ss_dssp CEEEEEEEEEEEEECSSEEE-EEEECSSCEEEEEEECC-----------CCSCCTTCEEEEEEEEEEE-------TTEEE
T ss_pred EEEEEEEEEEEEEecCCeEE-EEEECCCCCEEEEEecccCCcc---cccccccCCCCEEEEEEEEEEe-------CCEEE
Confidence 47999999999998875544 6899999999998764321100 0123579999999999998642 14577
Q ss_pred EEEeEEEEee
Q 013865 185 VQIKKLYCVS 194 (435)
Q Consensus 185 i~v~~i~vls 194 (435)
|.+..|..+.
T Consensus 106 i~~~~ir~v~ 115 (136)
T 4gop_B 106 ISSGHMRPVI 115 (136)
T ss_dssp EEESEEEECS
T ss_pred EEEEEEEECC
Confidence 8888887764
|
| >1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.084 Score=44.06 Aligned_cols=81 Identities=20% Similarity=0.256 Sum_probs=59.4
Q ss_pred EeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEEEEEecC
Q 013865 94 VVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~G~v~~~ 172 (435)
.+.+......+..|++.|.|...-.. .+ |.++|++++|+|-++.. .|. ..+++++-|.|.|.|-+.
T Consensus 27 TV~~a~~~~Dd~~V~L~G~Iv~~~~~-d~---Y~F~D~TG~I~VeId~~---------~w~g~~v~p~~~Vri~GevDkd 93 (109)
T 1nnx_A 27 TVESAKSLRDDTWVTLRGNIVERISD-DL---YVFKDASGTINVDIDHK---------RWNGVTVTPKDTVEIQGEVDKD 93 (109)
T ss_dssp CHHHHTTSCSSEEEEEEEEEEEEEET-TE---EEEEETTEEEEEECCGG---------GSTTCCCCTTSCEEEEEEEEEE
T ss_pred eHHHHhhCcCCCeEEEEEEEEEEeCC-Ce---EEEECCCccEEEEEChh---------hcCCcccCCCCEEEEEEEECCC
Confidence 34444455678999999999875432 23 78999999999998743 133 368999999999999752
Q ss_pred CcccCCCceeEEEEEeEEEEee
Q 013865 173 DVEIKGATQQVEVQIKKLYCVS 194 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls 194 (435)
- ...||.|..|.+|.
T Consensus 94 ~-------~~~eIdV~~i~~~~ 108 (109)
T 1nnx_A 94 W-------NSVEIDVKQIRKVN 108 (109)
T ss_dssp T-------TEEEEEEEEEEEC-
T ss_pred C-------CceEEEEEEEEEcc
Confidence 2 24688899998874
|
| >2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* | Back alignment and structure |
|---|
Probab=94.61 E-value=0.2 Score=55.43 Aligned_cols=111 Identities=17% Similarity=0.098 Sum_probs=72.1
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCCC----CCcc-eeEe-ccCC-CceeeccChHHHHhhhcc----CCC--ceeEE
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSSE----GGSA-VFRL-DYKG-QSACLAQSPQLHKQMSIC----GDF--GRVFE 319 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~e----gga~-~F~v-~~~~-~~~~L~~Spql~lq~~i~----~g~--~rVfe 319 (435)
.+.+.+|++|...||.|+.|..+++...- +... .+.+ |... ....||+|-=--+=..+. -+. =|+||
T Consensus 497 ~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~~v~L~NPis~e~svLRtsLlpgLL~~l~~N~~r~~~~vrlFE 576 (795)
T 2rhq_B 497 HKTRTLKETLEGAGLNQAITYSLVSKDHAKDFALQERPTISLLMPMSEAHATLRQSLLPHLIEATAYNVARKNKDVRLYE 576 (795)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEECTTTTTTTCSSCCCCEECSSCSCTTSSEECSCSHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEecCCccCHHHHHhhCCCCCceEEEcCCCchhhhhhhhccHHHHHHHHHHHhcCCCCCeEEEE
Confidence 46778999999999999999999865311 1222 2443 2222 234677554222222222 122 39999
Q ss_pred EecceecCCCCCCccccccccceeeeecc------------ccHHHHHHHHHHHHHHH
Q 013865 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIK------------KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 320 Igp~FR~E~s~t~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~li~~i 365 (435)
||+|||.+.. +..| +||+++..-+... -++.|+...++.++..+
T Consensus 577 iG~Vf~~d~~-~~~~-~e~~~la~l~~G~~~~~~w~~~~~~~dF~dlKg~le~ll~~l 632 (795)
T 2rhq_B 577 IGRVFFGNGE-GELP-DEVEYLSGILTGEYVVNAWQGKKEEIDFFIAKGVVDRVAEKL 632 (795)
T ss_dssp EEEEEECCCT-TSCC-EEEEEEEEEEESEEEEEGGGTEEEECCHHHHHHHHHHHHHHH
T ss_pred EeeEEecCCc-ccCc-chhhEEEEEEEeccccccccCCCCCCCHHHHHHHHHHHHHHc
Confidence 9999997542 2256 8999998766542 25889999999999865
|
| >3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=94.58 E-value=0.25 Score=45.57 Aligned_cols=113 Identities=18% Similarity=0.209 Sum_probs=72.0
Q ss_pred HHHHHHHHHhhcCCeEEeeCceeeccCC-C-----CCcceeEe-ccCC-CceeeccChHHHHhhhc----cCCCc--eeE
Q 013865 253 QVGNIFRQFLLSENFVEIHTPKLIAGSS-E-----GGSAVFRL-DYKG-QSACLAQSPQLHKQMSI----CGDFG--RVF 318 (435)
Q Consensus 253 ~i~~~~r~fl~~~gF~EV~TP~l~~~~~-e-----gga~~F~v-~~~~-~~~~L~~Spql~lq~~i----~~g~~--rVf 318 (435)
.+.+.+|+.|...||.||-|-.+++... + +......+ |-.. .--.||+|-=--+=..+ .-+.. |+|
T Consensus 8 ~~~~~ir~~L~~~G~~Evitysf~s~~~~~~~~~~~~~~~v~l~NPls~e~~vmRtsLlpgLL~~~~~N~~r~~~~~~lF 87 (213)
T 3ica_A 8 KWQTVVSEQLVGAGFNEILNNSLTAGSYYEGLKSHPREMAVELMNPLSQELNCMRQTLLFGGLETLSHNLRRKHLSLYLF 87 (213)
T ss_dssp HHHHHHHHHHHHTTCEECCCCSEEEGGGGTTCSSSCGGGCCBCSSBSCSSEEEECSSSHHHHHHHHHHHHTTTCSEEEEE
T ss_pred HHHHHHHHHHHHCCCceeeeccCCCHHHHhhhcccCcCCeEEecCCccHHHHHHHHHhHHHHHHHHHHHHcCCCCCeeEE
Confidence 5778899999999999999999986431 1 11122222 3222 34678887433322222 23443 899
Q ss_pred EEecceecCCCC-----CCccccccccceeeeecc------------ccHHHHHHHHHHHHHHH
Q 013865 319 ETGPVFRAEDSY-----THRHLCEFTGLDVEMEIK------------KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 319 eIgp~FR~E~s~-----t~rHl~EFt~lE~e~a~~------------~~~~d~m~~~e~li~~i 365 (435)
|||+||+.++.. ...+..|..+|-.-+... -++.|+..++|.++..+
T Consensus 88 EiG~Vf~~~~~~~~~~~~~~~~~e~~~la~~~~G~~~~~~w~~~~~~~df~d~Kg~ve~ll~~l 151 (213)
T 3ica_A 88 EWGKCYRFHAAKRTDETPLAAYAEDDRLGIWICGQRVHNSWAHPEEPTSVFELKAVVEQVLCRV 151 (213)
T ss_dssp EEEEEEEEECCCC--CCSSCEEEEEEEEEEEEEEBCCC-----CCCBCCHHHHHHHHHHHHHHT
T ss_pred EeeeEEecCCccccccccccccchhhEEEEEEeCCCCcccCCCCCCCcCHHHHHHHHHHHHHHh
Confidence 999999975421 113456777777765541 24888888888888765
|
| >1o7i_A SSB, SSO2364, single stranded DNA binding protein; OB fold; 1.2A {Sulfolobus solfataricus} SCOP: b.40.4.3 | Back alignment and structure |
|---|
Probab=93.82 E-value=0.44 Score=39.81 Aligned_cols=89 Identities=19% Similarity=0.190 Sum_probs=61.9
Q ss_pred EEeccccCCCCC-CEEEEEEEEeee---e----cCCC-ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEE
Q 013865 93 TVVGALNGSLKD-QEVLIRGRVHTT---R----PVGN-KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163 (435)
Q Consensus 93 ~~i~~l~~~~~g-~~V~v~GrV~~~---R----~~G~-kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV 163 (435)
.+|.+|.+ | ..|.+.|+|.++ | +.|+ ...=+.|.|.+++|.+.+=... +..+..|++|
T Consensus 3 ~~I~dL~~---~~~~v~~~~~V~~~~~~~~~~~k~G~~~~~~~~l~D~TG~I~~tlW~~~----------~~~~~~G~vv 69 (119)
T 1o7i_A 3 EKVGNLKP---NMESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGKH----------AGSIKEGQVV 69 (119)
T ss_dssp CCGGGCCT---TCSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGGG----------TTCCCTTCEE
T ss_pred EEHHHCcC---CCCcEEEEEEEEECCCCeeEEecCCCEEEEEEEEEeCCCEEEEEEECCh----------hhcCCCCCEE
Confidence 45666654 4 368999999876 4 3453 5667788899999999886421 1358999999
Q ss_pred EEE-EEEecCCcccCCCceeEEEEEeEEEEeecC--CCCCc
Q 013865 164 DVI-GVVSVPDVEIKGATQQVEVQIKKLYCVSRA--AKTPI 201 (435)
Q Consensus 164 ~V~-G~v~~~~~~~~~~t~~lEi~v~~i~vls~~--~~lP~ 201 (435)
.|. |.+..- .|.++|.+.+...+.++ ..+|.
T Consensus 70 ~i~~g~v~~~-------~g~~qL~i~~~~~i~~~~~~~~~~ 103 (119)
T 1o7i_A 70 KIENAWTTAF-------KGQVQLNAGSKTKIAEASEDGFPE 103 (119)
T ss_dssp EEEEEEEEEE-------TTEEEEEECTTCEEEECCCTTCCC
T ss_pred EEEeEEEEEe-------CCEEEEEECCCEEEEEcCCcCCCc
Confidence 999 777531 25689999886666655 24553
|
| >1jmc_A Protein (replication protein A (RPA)); human ssDNA binding replication protein A(RPA), single stranded DNA-binding protein, protein-ssDNA complex; HET: DNA; 2.40A {Homo sapiens} SCOP: b.40.4.3 b.40.4.3 PDB: 1fgu_A | Back alignment and structure |
|---|
Probab=92.93 E-value=0.32 Score=45.50 Aligned_cols=98 Identities=12% Similarity=0.092 Sum_probs=67.0
Q ss_pred cceEEeccccCCCCCCEEEEEEEEeee---e------cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCC
Q 013865 90 REWTVVGALNGSLKDQEVLIRGRVHTT---R------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNE 160 (435)
Q Consensus 90 ~~~~~i~~l~~~~~g~~V~v~GrV~~~---R------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~e 160 (435)
..++.|.+|.+.. ..++|+|||.++ | ..| ++.-++|.|..+.|++++... ..-+|...|..|
T Consensus 6 ~~~~~I~~L~p~~--~~w~I~~rV~~k~~~r~~~~~~~~g-~~~~~~L~De~G~I~at~~~~------~~~~~~~~l~~G 76 (246)
T 1jmc_A 6 SKVVPIASLTPYQ--SKWTICARVTNKSQIRTWSNSRGEG-KLFSLELVDESGEIRATAFNE------QVDKFFPLIEVN 76 (246)
T ss_dssp -CBCCGGGCCTTC--CCCEEEEEEEEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEEHH------HHHHHGGGCCTT
T ss_pred cceEEHHHCCCCC--CceEEEEEEEEecccceeeCCCCCc-eEEEEEEECCCCeEEEEEChH------HHHHhhhhcccC
Confidence 3567788887643 357899999865 2 234 566678999988999998732 234566789999
Q ss_pred cEEEEEEEEecCC-cccCCCceeEEEEEeEEEEeecC
Q 013865 161 SIVDVIGVVSVPD-VEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 161 siV~V~G~v~~~~-~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
+++.|.+...++. +.-+...+.+||....-..+.+|
T Consensus 77 ~vy~i~~~~v~~~~~~y~~~~~~~ei~~~~~T~I~~~ 113 (246)
T 1jmc_A 77 KVYYFSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC 113 (246)
T ss_dssp CEEEEECCEEEECCGGGCCCCCSEEEECCTTCEEEEC
T ss_pred CEEEECCCEEEEcccCcccCCCCEEEEEcCCcEEEEc
Confidence 9999998544332 22222336799999876666666
|
| >2kbn_A Conserved protein; nucleic acid binding protein, beta barrel, structural genomics, PSI-2, protein structure initiative; NMR {Methanosarcina mazei} PDB: 2ken_A | Back alignment and structure |
|---|
Probab=91.59 E-value=1.2 Score=36.60 Aligned_cols=87 Identities=10% Similarity=0.045 Sum_probs=62.1
Q ss_pred eEEeccccCCCCCCEEEEEEEEeeeec--CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEE-EE
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTTRP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI-GV 168 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~-G~ 168 (435)
+.+|.+|.+. +..|.+.|+|.++-. .|+....+.|-|.+++|-+++=.... +..+..|++|.|. |.
T Consensus 5 ~~kI~dl~~~--~~~v~v~~~V~~~~~~~~~~~~~~~~l~DeTG~I~~t~W~~~~---------~~~~~~G~~V~i~n~~ 73 (109)
T 2kbn_A 5 LTKIVDIVEN--GQWANLKAKVIQLWENTHESISQVGLLGDETGIIKFTIWKNAE---------LPLLEQGESYLLRSVV 73 (109)
T ss_dssp BCCTTTCCST--TCEEEEEEEEEEEEECCCSSEEEEEEEECTTCCEEEEEEGGGC---------CCCCCTTCEEEEEEEE
T ss_pred ceEHHHCCCC--CCcEEEEEEEEEeEcCCCCeEEEEEEEECCCCeEEEEEECccc---------ccccCCCCEEEEEEEE
Confidence 4457777642 778999999988643 34455568899999999999864221 2478999999999 56
Q ss_pred EecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 169 VSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 169 v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
+..- .|.++|.+.+...+.+.
T Consensus 74 v~~~-------~G~~~L~v~~~~~I~~~ 94 (109)
T 2kbn_A 74 VGEY-------NDRFQVQVNKNSSIEKL 94 (109)
T ss_dssp EEEE-------TTEEEEEECSSSEEEEC
T ss_pred EEEE-------CCEEEEEECCceEEEEC
Confidence 6431 25689999887666654
|
| >1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A | Back alignment and structure |
|---|
Probab=91.35 E-value=2.6 Score=34.25 Aligned_cols=53 Identities=11% Similarity=0.243 Sum_probs=33.4
Q ss_pred EEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeec
Q 013865 135 VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSR 195 (435)
Q Consensus 135 iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~ 195 (435)
++|++-.... + ...+.|++|+.|.|+|.+... ....|.+. ++|++++|..|+.
T Consensus 50 ~~vv~~g~~A----e--~~~~~l~KG~~V~V~G~L~~~-~~~~G~~r-~~v~~~~i~~l~~ 102 (104)
T 1txy_A 50 MPVIVSGHEN----Q--AITHSITVGSRITVQGFISCH-KAKNGLSK-MVLHAEQIELIDS 102 (104)
T ss_dssp EEEEEESSTT----H--HHHTTCCTTCEEEEEEEEEC---------C-CEEEEEEEEEC--
T ss_pred EEEEEEhHHH----H--HHHhhCCCCCEEEEEEEEEec-cCCCCCEE-EEEEEEEEEECcC
Confidence 8888774321 1 234679999999999999854 22223333 9999999998863
|
| >2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A | Back alignment and structure |
|---|
Probab=90.92 E-value=1.3 Score=42.43 Aligned_cols=79 Identities=14% Similarity=0.151 Sum_probs=55.8
Q ss_pred CEEEEEEEEeeeecCCCceEEEEEEeCCe-EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeE
Q 013865 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~l 183 (435)
..|++-|+|.++...+..+ -+.|.|+++ .|-|.+-....... .-...+..|++|.|.|.|..-. +..
T Consensus 72 ~~V~ivG~V~~i~~~~~~~-~~~L~D~TG~~I~~k~W~~~~~~~----~~~~~~~~G~yVrV~G~v~~f~-------g~~ 139 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAPTNI-VYKIDDMTAAPMDVRQWVDTDDTS----SENTVVPPETYVKVAGHLRSFQ-------NKK 139 (270)
T ss_dssp SEEEEEEEEEEEEECSSEE-EEEEECSSSSCEEEEEECC-----------CCCCCTTCEEEEEEEEEEET-------TEE
T ss_pred EEEEEEEEEEEEEeccceE-EEEEECCCCCEEEEEEEcCcCccc----chhhcCCCCCEEEEEEEEEecC-------Cee
Confidence 3699999999998776454 468999999 89999864321100 0124689999999999986421 357
Q ss_pred EEEEeEEEEeec
Q 013865 184 EVQIKKLYCVSR 195 (435)
Q Consensus 184 Ei~v~~i~vls~ 195 (435)
.|.+..|..+..
T Consensus 140 qi~i~~ir~v~d 151 (270)
T 2pi2_A 140 SLVAFKIMPLED 151 (270)
T ss_dssp EEEEEEEEECSC
T ss_pred EEEEEEEEecCC
Confidence 788888777654
|
| >3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A | Back alignment and structure |
|---|
Probab=90.66 E-value=1.2 Score=37.59 Aligned_cols=72 Identities=18% Similarity=0.293 Sum_probs=49.5
Q ss_pred CCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCC
Q 013865 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179 (435)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~ 179 (435)
....|+.|++-|+|.+++..|+ .|+.-..+++.|+|.++...+ ..+ +.+|.|.|+|..
T Consensus 18 ~~fvgk~VrivGkV~~~~~~g~--~~~l~s~Dg~~Vtv~l~~p~~----------~~l--~~~vEViG~V~~-------- 75 (121)
T 3kdf_A 18 AQFIDKPVCFVGRLEKIHPTGK--MFILSDGEGKNGTIELMEPLD----------EEI--SGIVEVVGRVTA-------- 75 (121)
T ss_dssp GGGTTCEEEEEEEEEEECTTSS--EEEEECTTSCEEEEECSSCCS----------SCC--CSEEEEEEEECT--------
T ss_pred HhhCCCeEEEEEEEEEEcCCCC--EEEEEeCCCCEEEEEeCCCCC----------ccc--CcEEEEEEEECC--------
Confidence 3688999999999999998883 343333456788888874211 123 459999999863
Q ss_pred ceeEEEEEeEEEEeec
Q 013865 180 TQQVEVQIKKLYCVSR 195 (435)
Q Consensus 180 t~~lEi~v~~i~vls~ 195 (435)
..+|.+..+..++.
T Consensus 76 --~~tI~~~~~~~fg~ 89 (121)
T 3kdf_A 76 --KATILCTSYVQFKE 89 (121)
T ss_dssp --TSCEEEEEEEECCC
T ss_pred --CCeEEEEEEEecCC
Confidence 23467766666554
|
| >2hpi_A DNA polymerase III alpha subunit; POL-beta-like nucleotidyltransferase fold, transferase; HET: DNA; 3.00A {Thermus aquaticus} PDB: 2hpm_A* 3e0d_A* | Back alignment and structure |
|---|
Probab=90.00 E-value=0.46 Score=54.68 Aligned_cols=79 Identities=13% Similarity=0.188 Sum_probs=47.0
Q ss_pred CCCCEEEEEEEEeeeec----CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccC
Q 013865 102 LKDQEVLIRGRVHTTRP----VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIK 177 (435)
Q Consensus 102 ~~g~~V~v~GrV~~~R~----~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~ 177 (435)
..|+.|+|+|.|.++|. .|+.++|+.|.|.++.+.+++..+.. .++...|..+.+|.|+|.|...+
T Consensus 1040 ~~g~~v~v~G~v~~~~~~~Tk~G~~maf~tleD~tg~~evvvf~~~~------~~~~~~l~~~~~~~v~G~v~~~~---- 1109 (1220)
T 2hpi_A 1040 PGKPKVLLSGMVEEVVRKPTRSGGMMARFTLSDETGALEVVVFGRAY------EGVSPKLKEDIPLLVLAEVEKGE---- 1109 (1220)
T ss_dssp SSSCEEEEEEEECCC------------CEEEEETTEEEEEC-------------------CTTCEEEEEEEEC-------
T ss_pred cCCCeEEEEEEEEEEEEeecCCCCeEEEEEEEECCCCEEEEEcHHHH------HHHHHHhccCCEEEEEEEEEECC----
Confidence 46889999999998774 45679999999999999999985422 23455689999999999996421
Q ss_pred CCceeEEEEEeEEEEee
Q 013865 178 GATQQVEVQIKKLYCVS 194 (435)
Q Consensus 178 ~~t~~lEi~v~~i~vls 194 (435)
.+.|.+.++.-++
T Consensus 1110 ----~~~l~~~~i~~l~ 1122 (1220)
T 2hpi_A 1110 ----ELRVLAQAVWTLE 1122 (1220)
T ss_dssp ------CEEEEEEEEHH
T ss_pred ----CcEEEEeeeecHH
Confidence 2567788877554
|
| >1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* | Back alignment and structure |
|---|
Probab=89.84 E-value=1.4 Score=48.62 Aligned_cols=105 Identities=20% Similarity=0.152 Sum_probs=68.6
Q ss_pred HHHHHHHHHHhhcCCeEEeeCceeeccC----CCCCcceeEe-ccCC-CceeeccChHHHHhhhcc-----C--CCceeE
Q 013865 252 SQVGNIFRQFLLSENFVEIHTPKLIAGS----SEGGSAVFRL-DYKG-QSACLAQSPQLHKQMSIC-----G--DFGRVF 318 (435)
Q Consensus 252 s~i~~~~r~fl~~~gF~EV~TP~l~~~~----~egga~~F~v-~~~~-~~~~L~~Spql~lq~~i~-----~--g~~rVf 318 (435)
..+.+.+|++|...||.|+-|-.+++.. ...+...+.+ |-.. ..-.||+|-=--+=..+. + .--|+|
T Consensus 492 ~~~~~~ir~~L~~~Gf~Evitysfvs~~~~~~l~~~~~~v~L~NPis~d~svLRtsLlpgLL~~l~~N~~r~~~~~vrlF 571 (785)
T 1b7y_B 492 YRKEQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLF 571 (785)
T ss_dssp HHHHHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSTTSSEECSCSHHHHHHHHHHHHHHSCCSCEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEecCcccCHHHHHhcCCCCCeEEEcCCCchhhhhhhhhhHHHHHHHHHHHhhcCCCCCeEEE
Confidence 4467889999999999999998887542 1111223433 2222 234677654222222222 1 224999
Q ss_pred EEecceecCCCCCCccccccccceeeeecc-----------ccHHHHHHHHHHHHHHH
Q 013865 319 ETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-----------KHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 319 eIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-----------~~~~d~m~~~e~li~~i 365 (435)
|||+||| + .||.++..-+... -++.|+...++.++..+
T Consensus 572 EiG~Vf~-~--------~e~~~lagl~~G~~~~~~w~~~~~vdf~dlKg~le~ll~~l 620 (785)
T 1b7y_B 572 EVGRVFR-E--------REETHLAGLLFGEGVGLPWAKERLSGYFLLKGYLEALFARL 620 (785)
T ss_dssp EEEEEES-S--------SEEEEEEEEEESSCBSCSSSSCCBCSHHHHHHHHHHHHHHH
T ss_pred EEeeeec-c--------ChhhEEEEEEECCCcccccCccCCcCHHHHHHHHHHHHHHc
Confidence 9999999 2 6888888766653 15889999999999865
|
| >4gop_C Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=89.13 E-value=0.67 Score=47.43 Aligned_cols=96 Identities=14% Similarity=0.125 Sum_probs=64.5
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee---e------cCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcE
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTT---R------PVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESI 162 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~---R------~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esi 162 (435)
++.|.+|.+.. ..++|+|||.++ | ..| ++.-++|.|..+.|++++... ..-+|...|..|++
T Consensus 3 ~~~I~~L~p~~--~~w~I~~rV~~k~~ir~~~~~~~~g-~~~~~~L~De~G~I~at~~~~------~~~~f~~~l~eG~v 73 (444)
T 4gop_C 3 IYPIEGLSPYQ--NRWTIKARVTSKSDIRHWSNQRGEG-KLFSVNLLDDSGEIKATGFND------AVDRFYPLLQENHV 73 (444)
T ss_dssp CCCSTTCCTTC--CSCEEEEECCEECCCEEEECSSCEE-EEEEEEEECSSCEEEEEEETH------HHHHHTTTCCTTCE
T ss_pred ceeHHHCCCCC--cceEEEEEEEEccCcceecCCCCCc-eEEEEEEEcCCCEEEEEEeHH------HHHHHHHheecCCE
Confidence 45677776643 357899999853 3 224 777789999999999998732 33456678999999
Q ss_pred EEEEEEEecC-CcccCCCceeEEEEEeEEEEeecC
Q 013865 163 VDVIGVVSVP-DVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 163 V~V~G~v~~~-~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
+.|.+...++ ...-+...+.+||....-..+.+|
T Consensus 74 y~Is~~~V~~~~~~y~~~~~~~ei~~~~~T~V~~~ 108 (444)
T 4gop_C 74 YLISKARVNIAKKQFSNLQNEYEITFENSTEIEEC 108 (444)
T ss_dssp EEEESCEEEECCGGGCSCCCSEEEEECTTCEEEEC
T ss_pred EEEcCCEEEecCCccccCCCCEEEEEcCCcEEEEc
Confidence 9999754433 222222336699999765555544
|
| >2k75_A Uncharacterized protein TA0387; closed beta barrel, OB fold, structural genomics, PSI-2, protein structure initiative; NMR {Thermoplasma acidophilum} | Back alignment and structure |
|---|
Probab=88.74 E-value=3.7 Score=33.51 Aligned_cols=89 Identities=10% Similarity=0.139 Sum_probs=60.8
Q ss_pred eEEeccccCCCCCCEEEEEEEEeee-----ecCCC--ceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEE
Q 013865 92 WTVVGALNGSLKDQEVLIRGRVHTT-----RPVGN--KLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (435)
Q Consensus 92 ~~~i~~l~~~~~g~~V~v~GrV~~~-----R~~G~--kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~ 164 (435)
+.+|++|.+. ...|.+.|+|.++ +..|+ .++=+.|-|.+++|.+.+=.. .+..|++|.
T Consensus 3 ~~kI~dl~pg--~~~v~v~~~V~~~~~~~~~k~G~~~~v~~~~l~DeTG~I~~tlW~~-------------~l~~Gdvv~ 67 (106)
T 2k75_A 3 LVKIRDVSLS--TPYVSVIGKITGIHKKEYESDGTTKSVYQGYIEDDTARIRISSFGK-------------QLQDSDVVR 67 (106)
T ss_dssp BCCSTTCCTT--CSEEEEEEEEEEEEEEEEEETTEEEEEEEEEEECSSCEEEEEEESS-------------CCCTTEEEE
T ss_pred cEEHHHcCCC--CceEEEEEEEEEccccccccCCCeeEEEEEEEEcCCCeEEEEEEcC-------------ccCCCCEEE
Confidence 3456777542 3457888888764 23453 256678889999988887632 189999999
Q ss_pred EE-EEEecCCcccCCCceeEEEEEeEEEEeecC-CCCCcc
Q 013865 165 VI-GVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTPIT 202 (435)
Q Consensus 165 V~-G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP~~ 202 (435)
|. |.+..- .+.++|.+.+...+.+. ..-|+.
T Consensus 68 i~ng~v~~~-------~g~~~L~v~~~~~I~~~~~~~~~~ 100 (106)
T 2k75_A 68 IDNARVAQF-------NGYLSLSVGDSSRIESVNVNIPLE 100 (106)
T ss_dssp EEEEEEEEE-------TTEEEEEECTTSEEEECCSCCCCS
T ss_pred EEeeEEeEE-------CCEEEEEECCcEEEEECCCCCccc
Confidence 99 766431 25699999887777776 555543
|
| >3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404} | Back alignment and structure |
|---|
Probab=88.23 E-value=3.1 Score=38.66 Aligned_cols=89 Identities=11% Similarity=0.147 Sum_probs=55.5
Q ss_pred CEEEEEEEEeeeecCC-------CceEEEEEEeCCe---EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc
Q 013865 105 QEVLIRGRVHTTRPVG-------NKLAFVVVRERVS---TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV 174 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G-------~kl~Fl~Lrd~~~---~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~ 174 (435)
+.|.|.|.|...+-.- ....|+.|-|.++ +|.|.++.... .+.. .. ......|.+|.|+|.+..-..
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~-~~~g-l~-l~~~~~G~iV~VkG~i~~~r~ 162 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQF-KEVG-LT-LDKKNYGKIVELEGEIYNWYD 162 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHH-HTTT-CC-TTSCCTTCEEEEEEEEEECCC
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHh-hccC-cc-ccccCCCeEEEEEEEEEeecc
Confidence 6899999999987543 1347888989876 58877663210 0000 00 012457999999999974211
Q ss_pred ccC-CCceeEEEEEeEEEEeecC
Q 013865 175 EIK-GATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 175 ~~~-~~t~~lEi~v~~i~vls~~ 196 (435)
... +..-.-||.++++.+++..
T Consensus 163 ~~~~~~~~~rei~ve~i~vl~~~ 185 (220)
T 3kf8_A 163 SINVSKKPDRELKVSKITVLSHR 185 (220)
T ss_dssp STTTTSCCCEEEEEEEEEEEESS
T ss_pred ccccccccceEEEEEEEEEeccC
Confidence 000 1111469999999999864
|
| >3vdy_A SSB, single-stranded DNA-binding protein SSBB; OB fold; 2.80A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=87.84 E-value=7.3 Score=32.03 Aligned_cols=58 Identities=17% Similarity=0.143 Sum_probs=36.4
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.-++|++-.. ......+.|.+|+.|.|+|.+....- ...|.+ ..+||.+..|.+|++.
T Consensus 50 ~~~~v~~wg~------~Ae~~~~~l~KG~~V~V~G~l~~~~~~d~dG~~~~~~ev~a~~i~~l~~~ 109 (116)
T 3vdy_A 50 DYVNCTLWRK------TAENTALYCQKGSLVGVSGRIQTRSYENEEGVNVYVTEVLADTVRFMDPK 109 (116)
T ss_dssp EEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEEEC----CCEEEEEEEEEEEEECC--
T ss_pred EEEEEEEECH------HHHHHHHhCCCCCEEEEEEEEEeeEEECCCCCEEEEEEEEEEEEEEccCC
Confidence 3578887632 11123456999999999999974321 122433 3499999999998754
|
| >3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A | Back alignment and structure |
|---|
Probab=87.82 E-value=10 Score=31.59 Aligned_cols=56 Identities=11% Similarity=0.235 Sum_probs=39.8
Q ss_pred EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCC
Q 013865 134 TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTP 200 (435)
Q Consensus 134 ~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP 200 (435)
.|+||+-.+ ..+.++.+.+|+.|.|+|.+....+ .| ..++|+++.|..|+.. ..=|
T Consensus 48 ~i~vv~~Gk-------~AE~~~~l~kGs~V~VeGrL~trs~--~G--~kl~l~a~~Ie~l~~~~~~~~ 104 (115)
T 3fhw_A 48 TISAVALGD-------LALLLADTPLGTEMQVQGFLAPARK--DS--VKVKLHLQQARRIAGSMGRDP 104 (115)
T ss_dssp EEEEEEETH-------HHHHHTTCCTTCEEEEEEEEEESST--TC--SSEEEEEEEEEECCCSCCC--
T ss_pred EEEEEEEhH-------HHHhhhccCCCCEEEEEEEEEECCC--CC--CEEEEEEEEEEEcCCCCCCCC
Confidence 388888632 2334578999999999999985432 23 3599999999999776 4444
|
| >3tqy_A Single-stranded DNA-binding protein; DNA replication, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=87.76 E-value=6.8 Score=34.36 Aligned_cols=57 Identities=9% Similarity=0.069 Sum_probs=37.2
Q ss_pred eEEEEEEeeCCCCCcHHHHH-HHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 133 STVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k-~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.-+.|++-.. ..+ ....|.+|+.|.|+|.+....- ...+.+ ..+||.+.+|.+|...
T Consensus 56 ~~i~vv~wg~-------~Ae~~~~~l~KG~~V~VeG~L~~~~~~dkdG~~r~~~eV~a~~i~~L~~k 115 (158)
T 3tqy_A 56 EWHRIAFFNR-------LAEIVGEYLRKGSKIYIEGSLRTRKWQDKNGVDRYTTEIIANEMHMLDNR 115 (158)
T ss_dssp EEEEEEEETH-------HHHHHHHHCCTTCEEEEEEEEEEEEEECSSSCEEEEEEEEEEEEEECC--
T ss_pred EEEEEEEEhH-------HHHHHHhhcCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEeEEEEccCC
Confidence 3467777632 223 3356999999999999874321 123443 3499999999999754
|
| >2vw9_A Single-stranded DNA binding protein; DNA replication, single-stranded DNA, single-stranded DNA binding protein, oligonucleotide/oligosaccharide binding fold, OB-fold; 2.30A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=87.22 E-value=6.5 Score=33.39 Aligned_cols=57 Identities=12% Similarity=0.104 Sum_probs=37.9
Q ss_pred eEEEEEEeeCCCCCcHHHHH-HHhcCCCCcEEEEEEEEecCCc-ccCCCc-eeEEEEEeEEEEeecC
Q 013865 133 STVQCLATVKPDSVSKEMVR-FVRSLSNESIVDVIGVVSVPDV-EIKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k-~~~~l~~esiV~V~G~v~~~~~-~~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.-+.|++-.. ..+ ..+.|.+||.|.|+|.+....- ...+.+ ..+||.+.+|..|...
T Consensus 49 ~~~~v~~wg~-------~Ae~~~~~l~KG~~V~V~G~L~~~~~~dkdG~~r~~~ev~a~~i~~l~~~ 108 (134)
T 2vw9_A 49 CFIDARLFGR-------TAEIANQYLSKGSSVLIEGRLTYESWMDQTGKKNSRHTITADSLQFMDKK 108 (134)
T ss_dssp EEEEEEEEHH-------HHHHHHHHCCTTCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEEECCCC
T ss_pred EEEEEEEEcH-------HHHHHHHhCCCCCEEEEEEEEEeeeEECCCCCEEEEEEEEEEEEEEccCC
Confidence 3577777632 223 3356999999999999874321 122333 3489999999998753
|
| >4gop_A Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis} | Back alignment and structure |
|---|
Probab=82.93 E-value=2.6 Score=35.14 Aligned_cols=54 Identities=26% Similarity=0.370 Sum_probs=39.0
Q ss_pred CCCCCEEEEEEEEeeeecCCCceEEEEEEe-CCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 101 SLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 101 ~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.+.|+.|+|-|+|.+.+. + . +.|.. .++.|.|.++... .+..+.+|.|.|+|..
T Consensus 15 ~~~g~~VrivGkV~~~~g-~---~-~~l~s~d~~~Vtv~l~~~~------------~~~~~~~vEViG~V~~ 69 (114)
T 4gop_A 15 QYVGQTVRIVGKVHKVTG-N---T-LLMQTSDLGNVEIAMTPDS------------DVSSSTFVEVTGKVSD 69 (114)
T ss_dssp GGTTSEEEEEEEEEEEET-T---E-EEEECTTSCEEEEECCSSC------------CGGGCSEEEEEEEECT
T ss_pred hhCCCeEEEEEEEeeeCC-C---E-EEEEeCCCCEEEEEeCCCC------------CcccCcEEEEEEEEcC
Confidence 578999999999999995 3 3 34554 4567777765321 2346889999999964
|
| >1z9f_A Single-strand binding protein; TM0604, single stranded DNA-binding protein, structural GENO joint center for structural genomics, JCSG; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=82.82 E-value=13 Score=32.47 Aligned_cols=58 Identities=16% Similarity=0.058 Sum_probs=35.6
Q ss_pred eEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEeEEEEeecC
Q 013865 133 STVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 133 ~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~~i~vls~~ 196 (435)
.-+.|++-.. ......+.|.+|+.|.|+|.+....-. ..|.+ ..++|.+.+|.+|...
T Consensus 63 ~~~~v~~wg~------~Ae~~~~~l~KG~~V~VeGrL~~~~~~dkdG~~r~~~eV~a~~i~~l~~~ 122 (153)
T 1z9f_A 63 DFFRIVTFGR------LAEFARTYLTKGRLVLVEGEMRMRRWETPTGEKRVSPEVVANVVRFMDRK 122 (153)
T ss_dssp EEEEEEEEHH------HHHHHHHHCCTTCEEEEEEEEEEEC-------CCCEEEEEEEEEEECC--
T ss_pred EEEEEEEECH------HHHHHHhhCCCCCEEEEEEEEEeceEECCCCCEEEEEEEEEEEEEEccCC
Confidence 3477777632 112234569999999999999743211 22333 3489999999999754
|
| >2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C | Back alignment and structure |
|---|
Probab=82.43 E-value=6.7 Score=33.96 Aligned_cols=57 Identities=23% Similarity=0.363 Sum_probs=40.1
Q ss_pred CCCCCCEEEEEEEEeeeecCCCceEEEEEEe-CCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
....|++|+|-|||.++-..| + .| .|.. ++..|+|.++.. .+ -..+.+|.|.|+|..
T Consensus 39 ~~fvGk~VriVGkV~~~~~~G-~-~~-~l~s~Dg~~VtV~l~~p---L~---------~~~~~~VEViG~V~~ 96 (142)
T 2pi2_E 39 AQFIDKPVCFVGRLEKIHPTG-K-MF-ILSDGEGKNGTIELMEP---LD---------EEISGIVEVVGRVTA 96 (142)
T ss_dssp GGSTTCEEEEEEEEEEECTTS-S-EE-EEECTTSCEEEEECSSC---CS---------SCCCSEEEEEEEECT
T ss_pred HhhCCCEEEEEEEEeEEcCCC-C-EE-EEEeCCCcEEEEEeCCC---CC---------ccCCCEEEEEEEECC
Confidence 468899999999999995556 3 34 4554 467888887631 11 134679999999953
|
| >3f2b_A DNA-directed DNA polymerase III alpha chain; DNA polymerase C, DNA polymerase III; HET: DGT; 2.39A {Geobacillus kaustophilus} PDB: 3f2c_A* 3f2d_A* | Back alignment and structure |
|---|
Probab=81.23 E-value=12 Score=42.34 Aligned_cols=92 Identities=13% Similarity=0.204 Sum_probs=65.6
Q ss_pred EEeccccCCCCCCEEEEEEEEeee--ec--CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEE
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTT--RP--VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGV 168 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~--R~--~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~ 168 (435)
+.+.++.+ ....|+|.|.|-.+ |. .|+.+.-+.|.|.+++|.|....+. ++..+....|+.|++|.|.|.
T Consensus 8 ~~~~~~~~--~~~~~~~~g~v~~~~~~~~~~~~~~~~~~~td~~~~~~~k~f~~~----~~~~~~~~~~~~g~~~~~~g~ 81 (1041)
T 3f2b_A 8 RRLETIVE--EERRVVVQGYVFDAEVSELKSGRTLLTMKITDYTNSILVKMFSRD----KEDAELMSGVKKGMWVKVRGS 81 (1041)
T ss_dssp BCGGGCCS--CEEEEEEEEEEEEEEEEECTTSCEEEEEEEECSSCEEEEEEECSS----HHHHHHHHTCCTTCEEEEEEE
T ss_pred ccHHHhhc--ccceEEEEEEEEEEEEEEccCCCEEEEEEEEeCCCCEEEEEeecc----cchHHHHhcCCCCCEEEEEEE
Confidence 44555543 24579999999864 42 4767777889999999988776432 333456678999999999999
Q ss_pred EecCCcccCCCceeEEEEEeEEEEeec
Q 013865 169 VSVPDVEIKGATQQVEVQIKKLYCVSR 195 (435)
Q Consensus 169 v~~~~~~~~~~t~~lEi~v~~i~vls~ 195 (435)
+.... -.+++.|.+..|..+.+
T Consensus 82 ~~~d~-----~~~~~~~~~~~~~~~~~ 103 (1041)
T 3f2b_A 82 VQNDT-----FVRDLVIIANDLNEIAA 103 (1041)
T ss_dssp EEEET-----TTTEEEEEEEEEEEECC
T ss_pred EEecc-----CCcceEEEeeeeEEecc
Confidence 97532 12467788888876654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 435 | ||||
| d1eova2 | 353 | d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As | 4e-49 | |
| d1n9wa2 | 304 | d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As | 2e-33 | |
| d1l0wa3 | 356 | d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt | 8e-33 | |
| d1c0aa3 | 346 | d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt | 1e-32 | |
| d1b8aa2 | 335 | d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As | 1e-30 | |
| d1nnha_ | 293 | d.104.1.1 (A:) Hypothetical protein PF1951 {Archae | 7e-29 | |
| d1e1oa2 | 342 | d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS | 4e-26 | |
| d1eova1 | 134 | b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR | 2e-20 | |
| d1b8aa1 | 103 | b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS | 1e-09 | |
| d1n9wa1 | 93 | b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) | 2e-08 | |
| d1c0aa1 | 106 | b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS | 5e-08 | |
| d1l0wa1 | 104 | b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS | 1e-06 |
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 168 bits (427), Expect = 4e-49
Identities = 130/238 (54%), Positives = 165/238 (69%), Gaps = 7/238 (2%)
Query: 200 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFR 259
PI +EDASRSEAE E A LP VN DTRL+ RVID+RT+ NQ IFRIQ+ V +FR
Sbjct: 1 PILLEDASRSEAEAEAA-----GLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFR 55
Query: 260 QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFE 319
++L ++ F E+HTPKL+ SEGGS+VF + Y A LAQSPQ +KQ I DF RV+E
Sbjct: 56 EYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYE 115
Query: 320 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEA 379
GPVFRAE+S THRH+ EFTGLD+EM ++HY EV+D + LFV IF L E+E
Sbjct: 116 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIEL 175
Query: 380 VAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 435
V KQYP E K K +RLT++EG++ML+ AG EI DL+TE+E+ LG+LV +K
Sbjct: 176 VRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDK 233
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 125 bits (314), Expect = 2e-33
Identities = 64/201 (31%), Positives = 105/201 (52%), Gaps = 6/201 (2%)
Query: 235 RVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQ 294
R + +R + ++Q+ + FR++L ++F EI TPK++ +EGGS +F +DY +
Sbjct: 2 RYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEK 61
Query: 295 SACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEV 354
A LAQSPQ + + G F RV+E PV+R E+ +T RHL E+ LDVEM ++
Sbjct: 62 RAYLAQSPQ-LYKQIMVGVFERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDL 120
Query: 355 MDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEI 414
M + + L + + N E+ + +P P LT E ++LK+ +
Sbjct: 121 MRLEEALLAEMLEEALNTAGDEIRLLGATWPSFPQDIPR----LTHAEAKRILKE-ELGY 175
Query: 415 DPLGDLNTESERKLGQLVLEK 435
DL+ E+ER LG+ E+
Sbjct: 176 PVGQDLSEEAERLLGEYAKER 196
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 124 bits (313), Expect = 8e-33
Identities = 62/234 (26%), Positives = 91/234 (38%), Gaps = 30/234 (12%)
Query: 200 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFR 259
P ++ R E E E +++ RL R +D+R Q R++ +V
Sbjct: 3 PFPVDAGWRGEEEKE-----------ASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIW 51
Query: 260 QFLLSENFVEIHTPKLIAGSSEGGSAVF--RLDYKGQSACLAQSPQLHKQMSICGDFGRV 317
FL E FV++ TP L + EG G L QSPQL KQM + R
Sbjct: 52 DFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQLFKQMLMVAGLDRY 111
Query: 318 FETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKEL 377
F+ FR ED R +FT LD+EM +V+++ +RL +F V
Sbjct: 112 FQIARCFRDEDLRADRQ-PDFTQLDLEMSF-VEVEDVLELNERLMAHVFREALGVELP-- 167
Query: 378 EAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEID-----PLGDLNTESER 426
PF L Y+ R ++ L+ G PL + + E E
Sbjct: 168 ------LPFPRLSYEEAMERYGSDK--PDLRREGFRFLWVVDFPLLEWDEEEEA 213
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 124 bits (311), Expect = 1e-32
Identities = 44/186 (23%), Positives = 79/186 (42%), Gaps = 4/186 (2%)
Query: 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSA 285
++ RL R +D+R + ++++ ++ R+F+ F++I TP L + EG
Sbjct: 10 NTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARD 69
Query: 286 --VFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDV 343
V +KG+ L QSPQL KQ+ + F R ++ FR ED R EFT +DV
Sbjct: 70 YLVPSRVHKGKFYALPQSPQLFKQLLMMSGFDRYYQIVKCFRDEDLRADRQ-PEFTQIDV 128
Query: 344 EMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEG 403
E +V ++++ L ++ + V + + LR +
Sbjct: 129 ETSF-MTAPQVREVMEALVRHLWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRDESKWA 187
Query: 404 VQMLKD 409
+ D
Sbjct: 188 PLWVID 193
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 118 bits (297), Expect = 1e-30
Identities = 74/201 (36%), Positives = 113/201 (56%), Gaps = 4/201 (1%)
Query: 223 LPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEG 282
+ DTRLNNR +D+R IF+I+S V R F F+EIHTPK+IA ++EG
Sbjct: 9 KVKAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEG 68
Query: 283 GSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLD 342
G+ +F + Y + A LA+SPQL+K++ + RV+E P+FRAE+ T RHL E +D
Sbjct: 69 GTELFPMKYFEEDAFLAESPQLYKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSID 128
Query: 343 VEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEE 402
EM + EVM ++RL + + KEL+ FE + K R+++++
Sbjct: 129 SEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELD----ILNFELEEPKLPFPRVSYDK 184
Query: 403 GVQMLKDAGVEIDPLGDLNTE 423
+++L D G EI D++TE
Sbjct: 185 ALEILGDLGKEIPWGEDIDTE 205
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 112 bits (281), Expect = 7e-29
Identities = 33/148 (22%), Positives = 56/148 (37%), Gaps = 10/148 (6%)
Query: 237 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTP-------KLIAGSSEGGSAVFRL 289
++I + IQ+++ F + E F + L + G +
Sbjct: 3 VEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEV 62
Query: 290 DYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEI 347
+ G L S LHKQ++I ++F P R E RH EFT LD E+E
Sbjct: 63 EIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVER 122
Query: 348 KKHYSEVMDIVDRLFVTIFDGLNNVCKK 375
++M +++RL +F +
Sbjct: 123 -AKMEDIMRLIERLVYGLFRKAEEWTGR 149
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Score = 106 bits (264), Expect = 4e-26
Identities = 48/214 (22%), Positives = 90/214 (42%), Gaps = 9/214 (4%)
Query: 228 QDTRLNNRVID-IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAV 286
Q+ R R +D I ++ F ++S++ RQF+++ F+E+ TP + +
Sbjct: 2 QEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARP 61
Query: 287 FR--LDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVE 344
F + L +P+L+ + + G F RVFE FR E + RH EFT +++
Sbjct: 62 FITHHNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELY 120
Query: 345 MEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKEL--EAVAKQYPFEPLKYKPKTLRLTFEE 402
M ++ +++++ + LF T+ + K PFE L + + E
Sbjct: 121 MAYADYH-DLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPET 179
Query: 403 GVQMLKDAGVEIDPLGDLN--TESERKLGQLVLE 434
+ L + + E LG++V E
Sbjct: 180 DMADLDNFDAAKALAESIGITVEKSWGLGRIVTE 213
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 84.7 bits (209), Expect = 2e-20
Identities = 51/140 (36%), Positives = 75/140 (53%), Gaps = 13/140 (9%)
Query: 62 NNYGDVPLQELQSVNDPQTGKWSEAVNGREWT-VVGALNGSLKDQEVLIRGRVHTTRPVG 120
+NYG +PL +QS + +TG ++ V D+EVL R RVH TR G
Sbjct: 3 DNYGKLPL--IQSRDSDRTG--------QKRVKFVDLDEAKDSDKEVLFRARVHNTRQQG 52
Query: 121 NKLAFVVVRERVSTVQCLATVK-PDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA 179
LAF+ +R++ S +Q L ++SK MV++ SL+ ESIV V G+V D IK A
Sbjct: 53 ATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSA 112
Query: 180 -TQQVEVQIKKLYCVSRAAK 198
Q +E+ I K+Y +S +
Sbjct: 113 TVQNLEIHITKIYTISETPE 132
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 103 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Score = 52.7 bits (126), Expect = 1e-09
Identities = 26/101 (25%), Positives = 45/101 (44%), Gaps = 7/101 (6%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
+ L Q+V + G V + +G + F+ +R+R VQ T V E+ + +
Sbjct: 8 SEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQI--TAPKKKVDPELFKLIP 64
Query: 156 SLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196
L +E +V V GVV A E+ +K+ ++RA
Sbjct: 65 KLRSEDVVAVEGVV----NFTPKAKLGFEILPEKIVVLNRA 101
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 93 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Score = 49.8 bits (119), Expect = 2e-08
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 18/98 (18%)
Query: 104 DQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIV 163
QEV + G +H R +G ++ F+++R+R VQ + ++ ES +
Sbjct: 13 GQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQV------------VTGGLKLPLPESAL 59
Query: 164 DVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPI 201
V G+V VE A +EVQ K++ +S A P
Sbjct: 60 RVRGLV----VENAKAPGGLEVQAKEVEVLSP-ALEPT 92
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 106 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Score = 48.5 bits (115), Expect = 5e-08
Identities = 30/104 (28%), Positives = 46/104 (44%), Gaps = 8/104 (7%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G L S Q+V + G V+ R +G L F+ +R+R VQ D + ++
Sbjct: 7 GQLRLSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVF----FDPDRADALKLAS 61
Query: 156 SLSNESIVDVIGVVSVPDVEIKG---ATQQVEVQIKKLYCVSRA 196
L NE + V G V D + AT ++EV L ++RA
Sbjct: 62 ELRNEFCIQVTGTVRARDEKNINRDMATGEIEVLASSLTIINRA 105
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 104 | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Score = 44.7 bits (105), Expect = 1e-06
Identities = 29/102 (28%), Positives = 49/102 (48%), Gaps = 7/102 (6%)
Query: 96 GALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVR 155
G+L + +EV++ G V+ R +G L F+ +R+R VQ P S + VR
Sbjct: 8 GSLRETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQL--VAHPASPAYATAERVR 64
Query: 156 SLSNESIVDVIGV-VSVPDVEIKGATQQVEVQIKKLYCVSRA 196
E +V G+ P+ + AT +VEV++ L ++ A
Sbjct: 65 ---PEWVVRAKGLVRLRPEPNPRLATGRVEVELSALEVLAEA 103
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 435 | |||
| d1eova2 | 353 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 100.0 | |
| d1b8aa2 | 335 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 100.0 | |
| d1e1oa2 | 342 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 100.0 | |
| d1l0wa3 | 356 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1c0aa3 | 346 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 100.0 | |
| d1n9wa2 | 304 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 100.0 | |
| d1nnha_ | 293 | Hypothetical protein PF1951 {Archaeon Pyrococcus f | 100.0 | |
| d1eova1 | 134 | Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S | 99.93 | |
| d1e1oa1 | 143 | Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g | 99.85 | |
| d1b8aa1 | 103 | Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ | 99.83 | |
| d1n9wa1 | 93 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.8 | |
| d1c0aa1 | 106 | Aspartyl-tRNA synthetase (AspRS) {Escherichia coli | 99.79 | |
| d1l0wa1 | 104 | Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph | 99.78 | |
| d1z7ma1 | 318 | ATP phosphoribosyltransferase regulatory subunit H | 97.98 | |
| d1jjca_ | 266 | Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS | 97.98 | |
| d1qf6a4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Escherichia coli | 97.86 | |
| d1nyra4 | 291 | Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a | 97.73 | |
| d1wu7a2 | 327 | Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop | 97.67 | |
| d1qe0a2 | 325 | Histidyl-tRNA synthetase (HisRS) {Staphylococcus a | 97.66 | |
| d1nj8a3 | 268 | Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc | 97.64 | |
| d1hc7a2 | 272 | Prolyl-tRNA synthetase (ProRS) {Thermus thermophil | 97.53 | |
| d1kmma2 | 322 | Histidyl-tRNA synthetase (HisRS) {Escherichia coli | 97.28 | |
| d1h4vb2 | 324 | Histidyl-tRNA synthetase (HisRS) {Thermus thermoph | 97.28 | |
| d1seta2 | 311 | Seryl-tRNA synthetase (SerRS) {Thermus thermophilu | 97.19 | |
| d1nj1a3 | 265 | Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth | 97.1 | |
| d1b76a2 | 331 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 97.09 | |
| d1usya_ | 275 | ATP phosphoribosyltransferase regulatory subunit H | 96.85 | |
| d1jmca1 | 116 | Replication protein A 70 KDa subunit (RPA70) {Huma | 96.45 | |
| d1nnxa_ | 106 | Hypothetical protein YgiW {Escherichia coli [TaxId | 94.73 | |
| d2pi2a1 | 128 | Replication protein A 32 KDa subunit (RPA32) fragm | 94.63 | |
| d1o7ia_ | 115 | Archaeal ssDNA-binding protein {Archaeon Sulfolobu | 93.48 | |
| d2pi2e1 | 115 | Replication protein A 14 KDa (RPA14) subunit {Huma | 92.67 | |
| d1gm5a2 | 180 | RecG "wedge" domain {Thermotoga maritima [TaxId: 2 | 92.61 | |
| d1v1qa_ | 111 | Primosomal replication protein N, PriB {Escherichi | 87.29 | |
| d3ulla_ | 115 | ssDNA-binding protein {Human (Homo sapiens), mitoc | 86.23 | |
| d1jjcb5 | 207 | Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, | 85.42 | |
| d12asa_ | 327 | Asparagine synthetase {Escherichia coli [TaxId: 56 | 84.53 | |
| d1se8a_ | 231 | ssDNA-binding protein {Deinococcus radiodurans [Ta | 81.91 | |
| d1se8a_ | 231 | ssDNA-binding protein {Deinococcus radiodurans [Ta | 81.24 | |
| d1atia2 | 394 | Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil | 80.24 |
| >d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-52 Score=421.24 Aligned_cols=230 Identities=56% Similarity=0.873 Sum_probs=208.5
Q ss_pred CcccccccchHHHHHhhhhcCCCCCCCCccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC
Q 013865 200 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS 279 (435)
Q Consensus 200 P~~~~d~~~~~~~~~~~~~~~~~~~~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~ 279 (435)
|+.+.|+++++...+. ...+.++.||||||||||||++.++++|++||.|++++|+||.++||+||+||+|++++
T Consensus 1 ~~~~~~~~~~~~~~~~-----~~~~~~~~e~r~~~R~lDlr~~~~~~ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~ 75 (353)
T d1eova2 1 PILLEDASRSEAEAEA-----AGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAP 75 (353)
T ss_dssp SSCHHHHTSCHHHHHH-----TTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC
T ss_pred CcccccccCCcccccc-----cCCCCCCHHHHhhhhHHhhCCHhHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCC
Confidence 6677788777665443 35667999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeEeccCCCceeeccChHHHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHH
Q 013865 280 SEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVD 359 (435)
Q Consensus 280 ~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e 359 (435)
+|||+++|.+.|++.++||++|||||||+++++|++|||+||||||||++++.||||||||||||++|.++|+++|+++|
T Consensus 76 ~eg~~~~f~~~~~~~~~yL~~Spel~lk~ll~~g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~~~~e 155 (353)
T d1eova2 76 SEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLS 155 (353)
T ss_dssp SSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHH
T ss_pred CcchhccccceeeCCcceeccchhhhhhhhhhcccccceeechhhhccccccccccchhcccccccccchhhHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888999999999999999987999999999
Q ss_pred HHHHHHHhhhhhhhHHHHHHhhhcCCCcccCC--CCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhc
Q 013865 360 RLFVTIFDGLNNVCKKELEAVAKQYPFEPLKY--KPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 360 ~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~--~~p~~rit~~eai~lL~~~g~~~~~~~dl~te~E~~L~~~vke 434 (435)
+|+.++++.+..++...++.+...++...... ..++.|++|.+|+++|++.+..+.+.+|+.++.++.|++++.+
T Consensus 156 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~~~~~~~~~~~~~~~~~~l~~~i~~ 232 (353)
T d1eova2 156 ELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRD 232 (353)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred HHHhhhccccchhhhhhhhhhcccCccceeeccCCCceeeeehHhhHHHHHHHhhhcccccccchhhHHHHHHHHHh
Confidence 99999999999888888887777665443322 2479999999999999999988888899999999999998764
|
| >d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=100.00 E-value=1.3e-45 Score=368.60 Aligned_cols=205 Identities=37% Similarity=0.593 Sum_probs=188.2
Q ss_pred CCCccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHH
Q 013865 225 RVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQL 304 (435)
Q Consensus 225 ~~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql 304 (435)
..+.++||+|||||||++.++++|++||.|+++||+||.++||+||+||+|+.+.++|++++|.++++++++||++|||+
T Consensus 11 ~~~~~~r~~~R~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gflEV~TPil~~~~~~~~~~~f~~~~~~~~~yL~~SpE~ 90 (335)
T d1b8aa2 11 KAELDTRLNNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPMKYFEEDAFLAESPQL 90 (335)
T ss_dssp CCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESCCCSSSSSCCEEEETTEEEEECSCSHH
T ss_pred CCCHHHHhhchhheeCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCccCCchhhhhccccccccccccccChHH
Confidence 46889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcC
Q 013865 305 HKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQY 384 (435)
Q Consensus 305 ~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~ 384 (435)
|+|+++++|++|||+||||||||++++.||++||||+|+|+++.++++++|++++.++..+.+.+...+..+++.++...
T Consensus 91 ~lkrll~~g~~~if~i~~~FR~e~~~~~rh~~Ef~~le~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (335)
T d1b8aa2 91 YKEIMMASGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYVREHNAKELDILNFEL 170 (335)
T ss_dssp HHHHGGGTTCCEEEEEEEEECCCSSCCSSCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTCCC
T ss_pred HHHHHHhhhhhhHHHhhcccccccccccccchHHHhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHhhcccchhhhhcccc
Confidence 99999999999999999999999988889999999999999987679999999999999999999888877777655432
Q ss_pred CCcccCCCCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhh
Q 013865 385 PFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVL 433 (435)
Q Consensus 385 ~~~~~~~~~p~~rit~~eai~lL~~~g~~~~~~~dl~te~E~~L~~~vk 433 (435)
. ....||+|++|.+|+++|.+.|.++++++|+.++..+.+..++.
T Consensus 171 ~----~~~~~~~r~~~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (335)
T d1b8aa2 171 E----EPKLPFPRVSYDKALEILGDLGKEIPWGEDIDTEGERLLGKYMM 215 (335)
T ss_dssp C----CCCSSCCEEEHHHHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHH
T ss_pred c----cCCCCcccccHHHHHHHHHhhccccCcccccccccccceeeeee
Confidence 2 23458999999999999999999999999999998887776654
|
| >d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=100.00 E-value=7.3e-45 Score=364.26 Aligned_cols=172 Identities=24% Similarity=0.401 Sum_probs=153.2
Q ss_pred Ccccccccccccc-ccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChH
Q 013865 227 NQDTRLNNRVIDI-RTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQ 303 (435)
Q Consensus 227 ~~etrl~~R~Ldl-r~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spq 303 (435)
|+|+||+|||||| |++.++++|++||.|++++|+||.++||+||+||+|+++.++|++.+|.+ +||+.++||+||||
T Consensus 1 d~~~Rl~~R~lDl~r~~~~~~~~r~Rs~i~~~iR~ff~~~gFiEV~TPil~~~~~~~~~~~f~~~~~~~~~~~yL~~Spq 80 (342)
T d1e1oa2 1 DQEVRYRQRYLDLIANDKSRQTFVVRSKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPE 80 (342)
T ss_dssp CTTHHHHTHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEEETTTTEEEEECSCSH
T ss_pred ChHhhhhcchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCccccCCCCCCcceeecccCCCcccccchhhH
Confidence 4689999999999 77999999999999999999999999999999999998888888899976 68999999999999
Q ss_pred HHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Q 013865 304 LHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQ 383 (435)
Q Consensus 304 l~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~ 383 (435)
||||+++++|++|||+||||||+|++ +.||+||||||||||+|++ ++|+|+++|+|+++++..+.+.+...
T Consensus 81 l~~k~~l~~g~~~vf~i~p~FR~E~~-~~rHl~EFtmlE~e~a~~~-~~d~m~~~e~l~~~i~~~~~~~~~~~------- 151 (342)
T d1e1oa2 81 LYLKRLVVGGFERVFEINRNFRNEGI-SVRHNPEFTMMELYMAYAD-YHDLIELTESLFRTLAQEVLGTTKVT------- 151 (342)
T ss_dssp HHHHHHHHHTCCEEEEEEEEECCCCC-CC-CCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHSSSEEE-------
T ss_pred HHHHHHhhhcccceeeeccccccccc-cccchHHHHHHHHHHHhhh-hhhHHHhhhHHHHHHHHHHhCcchhh-------
Confidence 99999999999999999999999986 6799999999999999996 99999999999999999887654321
Q ss_pred CCCcccCCCCCCceeeHHHHHHHH
Q 013865 384 YPFEPLKYKPKTLRLTFEEGVQML 407 (435)
Q Consensus 384 ~~~~~~~~~~p~~rit~~eai~lL 407 (435)
+.....++..||.|+++.+++..+
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~ 175 (342)
T d1e1oa2 152 YGEHVFDFGKPFEKLTMREAIKKY 175 (342)
T ss_dssp ETTEEEETTSCCEEEEHHHHHHHH
T ss_pred ccchhcccCCchhhhhHHHHHHHH
Confidence 233344566789999999998744
|
| >d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=100.00 E-value=7.2e-44 Score=359.12 Aligned_cols=164 Identities=30% Similarity=0.448 Sum_probs=150.2
Q ss_pred CCccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChH
Q 013865 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQ 303 (435)
Q Consensus 226 ~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spq 303 (435)
+++|+||||||||||++..++|||+||.|+++||+||.++||+||+||+|++++++|++..|.+ +|++.++||++|||
T Consensus 18 ~~~~~Rl~~R~LdLR~~~~~~ilr~Rs~i~~~iR~ff~~~gfiEV~TP~L~~~~~eg~~~~~~~~~~~~~~~~yL~~Spe 97 (356)
T d1l0wa3 18 ASEELRLKYRYLDLRRRRMQENLRLRHRVIKAIWDFLDREGFVQVETPFLTKSTPEGARDFLVPYRHEPGLFYALPQSPQ 97 (356)
T ss_dssp CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECTTSTTEEEECCSCSH
T ss_pred cCHHHHhhchhhhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccccCCCcccccchhhhhcccccccCCCcChh
Confidence 5789999999999999999999999999999999999999999999999999999998887765 78999999999999
Q ss_pred HHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Q 013865 304 LHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQ 383 (435)
Q Consensus 304 l~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~ 383 (435)
||||+++++|++|||+||||||||++++ ||+|||||||||++|++ |+++|+++|+|++++++.+.+.
T Consensus 98 l~lk~ll~~g~~~Vf~i~~~FRaE~~~t-~H~~EFtmLE~e~~~~~-~~~~m~~~E~li~~v~~~~~~~----------- 164 (356)
T d1l0wa3 98 LFKQMLMVAGLDRYFQIARCFRDEDLRA-DRQPDFTQLDLEMSFVE-VEDVLELNERLMAHVFREALGV----------- 164 (356)
T ss_dssp HHHHHHHHTTCSEEEEEEEEECCCCCCS-SCCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHTCC-----------
T ss_pred HHHHHhhhcccCcEEEEeccccccccCC-cchhhhhHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHhCC-----------
Confidence 9999999999999999999999999855 89999999999999997 9999999999999999876532
Q ss_pred CCCcccCCCCCCceeeHHHHHHHHH
Q 013865 384 YPFEPLKYKPKTLRLTFEEGVQMLK 408 (435)
Q Consensus 384 ~~~~~~~~~~p~~rit~~eai~lL~ 408 (435)
.+..||+|++|.+|+..+.
T Consensus 165 ------~~~~~f~r~~~~~a~~~~~ 183 (356)
T d1l0wa3 165 ------ELPLPFPRLSYEEAMERYG 183 (356)
T ss_dssp ------CCCSSCCEEEHHHHHHHHS
T ss_pred ------CCCCCCCcchHHhhHHHHh
Confidence 1234899999999998653
|
| >d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.2e-43 Score=356.29 Aligned_cols=162 Identities=26% Similarity=0.406 Sum_probs=146.7
Q ss_pred CCccccccccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEe--ccCCCceeeccChH
Q 013865 226 VNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRL--DYKGQSACLAQSPQ 303 (435)
Q Consensus 226 ~~~etrl~~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v--~~~~~~~~L~~Spq 303 (435)
.+.|+|+||||||||++..+++|++||.|+++||+||.++||+||+||+|++++++|++..|.. .+++..+||+||||
T Consensus 10 ~~~e~Rl~~R~LdLr~~~~~~ilr~Rs~i~~~iR~ff~~~gFlEV~TPiL~~~~~~g~~~~~~~~~~~~~~~~~L~~Spe 89 (346)
T d1c0aa3 10 NTEEARLKYRYLDLRRPEMAQRLKTRAKITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQ 89 (346)
T ss_dssp CCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSSBCCCSSSSCCCEEECSSSTTCEEECCSCSH
T ss_pred CCHHHHhhchHHhhCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCccccccccccccCCCccccCCcCHH
Confidence 5678999999999999999999999999999999999999999999999999989988887665 45789999999999
Q ss_pred HHHhhhccCCCceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhc
Q 013865 304 LHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQ 383 (435)
Q Consensus 304 l~lq~~i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~ 383 (435)
||||+++++|++|||+||||||||++ +.||+||||||||||+|++ |+|+|+++|+|+++++..+.+.
T Consensus 90 l~lk~ll~~g~~~Vf~i~~~FR~E~~-~~~H~~EFtmLE~e~a~~~-~~~~m~~~E~li~~l~~~~~~~----------- 156 (346)
T d1c0aa3 90 LFKQLLMMSGFDRYYQIVKCFRDEDL-RADRQPEFTQIDVETSFMT-APQVREVMEALVRHLWLEVKGV----------- 156 (346)
T ss_dssp HHHHHHHHTTCCEEEEEEEEECCCCC-BTTBCSEEEEEEEEEESCC-HHHHHHHHHHHHHHHHHHHHSC-----------
T ss_pred HHHHHHhhcCCCceEEEeeecccccc-CchhhhHhhhhcccccccc-HhHhHHHHHHHHHHHHHHHhCC-----------
Confidence 99999999999999999999999998 5577799999999999996 9999999999999999876421
Q ss_pred CCCcccCCCCCCceeeHHHHHHHH
Q 013865 384 YPFEPLKYKPKTLRLTFEEGVQML 407 (435)
Q Consensus 384 ~~~~~~~~~~p~~rit~~eai~lL 407 (435)
+ ..+|++++|.|++..+
T Consensus 157 ------~-~~~~~~~~~~e~~~~~ 173 (346)
T d1c0aa3 157 ------D-LGDFPVMTFAEAERRY 173 (346)
T ss_dssp ------C-CCSCCEEEHHHHHHHH
T ss_pred ------c-CCccceeeHHHHHHHh
Confidence 1 2478999999998754
|
| >d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=100.00 E-value=5.9e-42 Score=337.68 Aligned_cols=195 Identities=34% Similarity=0.560 Sum_probs=135.7
Q ss_pred ccccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeeccChHHHHhhhccCC
Q 013865 234 NRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGD 313 (435)
Q Consensus 234 ~R~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~~i~~g 313 (435)
|||||||++.++++|++||.|++++|+||.++||+||+||+|+.++++|++++|.++|+++++||++||||||| ++++|
T Consensus 1 yR~ldlr~~~~~~~l~~Rs~i~~~iR~ff~~~gf~Ev~TP~l~~~~~e~~~~~f~~~~~~~~~~L~~Spel~k~-ll~~g 79 (304)
T d1n9wa2 1 YRYVTLRGEKARAPLKVQAALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFEKRAYLAQSPQLYKQ-IMVGV 79 (304)
T ss_dssp CHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCC----------------------------CHHHHH-HHHHH
T ss_pred CCeEEecCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCCCCCCCceECCcccccchhccccHHHHHH-Hhhcc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999988 56778
Q ss_pred CceeEEEecceecCCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCCcccCCCC
Q 013865 314 FGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPFEPLKYKP 393 (435)
Q Consensus 314 ~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 393 (435)
++|||+||||||+|++.+.||++||||||||++|.++++++|+++|++++.++..+.+.+...+..++...+ ....
T Consensus 80 ~~~if~i~~~FR~ee~~~~rh~~EF~~le~~~~~~~~~~~~~~l~E~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 155 (304)
T d1n9wa2 80 FERVYEVAPVWRMEEHHTSRHLNEYLSLDVEMGFIADEEDLMRLEEALLAEMLEEALNTAGDEIRLLGATWP----SFPQ 155 (304)
T ss_dssp HSEEEEEEEC-------------CCEEEEEEEESCSSHHHHHHHHHHHHHHHHHHHHHHSHHHHHHTTCCCC----CCSS
T ss_pred cccceeehhhcccccccccccccHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhcccee----cccc
Confidence 999999999999999878899999999999999987799999999999999999998888777766554322 2345
Q ss_pred CCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhc
Q 013865 394 KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLE 434 (435)
Q Consensus 394 p~~rit~~eai~lL~~~g~~~~~~~dl~te~E~~L~~~vke 434 (435)
+|+++++.||++++... ...++..|++.+.++.|++++.+
T Consensus 156 ~~~~~~~~e~~~~l~~~-~~~~~~~~~~~~~~~~l~~~~~~ 195 (304)
T d1n9wa2 156 DIPRLTHAEAKRILKEE-LGYPVGQDLSEEAERLLGEYAKE 195 (304)
T ss_dssp SCCEEEHHHHHHHHHHT-SCCCCCSSCCHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHH-hCCCcCCCccHHHHHHHHHHHHh
Confidence 78999999999988774 34567789999999999998864
|
| >d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Hypothetical protein PF1951 species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=8.2e-41 Score=328.30 Aligned_cols=158 Identities=22% Similarity=0.334 Sum_probs=138.7
Q ss_pred ccccccHHHHHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----CC---CCcceeEeccCCCceeeccChHHHHhh
Q 013865 236 VIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SE---GGSAVFRLDYKGQSACLAQSPQLHKQM 308 (435)
Q Consensus 236 ~Ldlr~~~~~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~e---gga~~F~v~~~~~~~~L~~Spql~lq~ 308 (435)
-||||++..+++|++||.|++++|+||.++||+||+||+|++.. ++ .|+.+|.++|||+++||++|||||||+
T Consensus 2 ~l~l~~~~~~~il~~Rs~i~~~iR~ff~~~gf~EV~tPil~~~~~~~~~~~~~~~~~~~~~~~~~~~~yL~~SPel~lk~ 81 (293)
T d1nnha_ 2 AVEIISREISPTLDIQTKILEYMTDFFVKEGFKWLLPVIISPITDPLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQL 81 (293)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHHHHHHHTTCEEECCCCEESCCCCCCSCTTCCCCCCCEEEETTEEEEECSCSHHHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEcCCcccccCCCCCCccccCccccccccCCCceeecccChhhhHHH
Confidence 38999999999999999999999999999999999999997532 22 256689999999999999999999999
Q ss_pred hccCCCceeEEEecceecCC--CCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhhhhhHHHHHHhhhcCCC
Q 013865 309 SICGDFGRVFETGPVFRAED--SYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLNNVCKKELEAVAKQYPF 386 (435)
Q Consensus 309 ~i~~g~~rVfeIgp~FR~E~--s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~ 386 (435)
+|++|++|||+||||||||+ ++|+||||||||||||++|++ |+|+|+++|+|++++++.+.+.+ +..
T Consensus 82 lla~g~~~Vf~I~~~FR~E~~~s~t~RH~~EFtmLE~e~~~~d-~~d~m~~~e~li~~~~~~~~~~~-------~~~--- 150 (293)
T d1nnha_ 82 AIAMGLKKIFVLSPNIRLESRQKDDGRHAYEFTQLDFEVERAK-MEDIMRLIERLVYGLFRKAEEWT-------GRE--- 150 (293)
T ss_dssp HHHTTCCEEEEEEEEECCCCGGGCSSSCCSEEEEEEEEEETCC-HHHHHHHHHHHHHHHHHHHHHHH-------SSC---
T ss_pred HHHhccccceeechhhhcCcccCCCCccchhhhhhcccccccc-HHHHHHHHHHHHHHHHHHHHHHh-------Ccc---
Confidence 99999999999999999996 457899999999999999985 99999999999999998876432 222
Q ss_pred cccCCCCCCceeeHHHHHHH
Q 013865 387 EPLKYKPKTLRLTFEEGVQM 406 (435)
Q Consensus 387 ~~~~~~~p~~rit~~eai~l 406 (435)
+....+|+|++|.||++.
T Consensus 151 --~~~~~~~~~~~~~eal~~ 168 (293)
T d1nnha_ 151 --FPKTKRFEVFEYSEVLEE 168 (293)
T ss_dssp --CCCCSSCEEEEHHHHHHH
T ss_pred --cccCCccccccHHhhhcc
Confidence 233468999999999863
|
| >d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=2.6e-25 Score=193.52 Aligned_cols=130 Identities=38% Similarity=0.558 Sum_probs=111.3
Q ss_pred CCCCcccCChhhhhccCCCCCCcccccccCcceEEeccccC-CCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEE
Q 013865 60 LANNYGDVPLQELQSVNDPQTGKWSEAVNGREWTVVGALNG-SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCL 138 (435)
Q Consensus 60 ~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~-~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv 138 (435)
++++||++|+.+++.. +.+...++++.++.. .+.|++|+|+|||+++|.+|+||+|++|||+++++|++
T Consensus 1 ~~~~yG~lp~~~s~~~----------~~~~~~r~~i~dl~~~~~~g~~V~v~GwV~~~R~~G~kl~F~~LrD~sg~iQ~~ 70 (134)
T d1eova1 1 AKDNYGKLPLIQSRDS----------DRTGQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASLIQGL 70 (134)
T ss_dssp CCSSEEECCCCCCCGG----------GCCCCCCCCGGGCCTTTTTTCEEEEEEEEEEEEECSSSEEEEEEEETTEEEEEE
T ss_pred ChhhcCCCcccccccc----------ccCCcEEEEeccccchhcCCCEEEEEEEEEEEEeCCCcEEEEEEEcCCCcEEEE
Confidence 3679999999876552 234566788888754 67899999999999999999889999999999999999
Q ss_pred EeeCCCC-CcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCc-eeEEEEEeEEEEeecC-CCC
Q 013865 139 ATVKPDS-VSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYCVSRA-AKT 199 (435)
Q Consensus 139 ~~~~~~~-~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t-~~lEi~v~~i~vls~~-~~l 199 (435)
+..+... .+.+|++|++.|+.||+|.|+|+|.+++.++.+++ |++||++++|+|||+| .+|
T Consensus 71 v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~Ei~v~~i~vls~a~~~L 134 (134)
T d1eova1 71 VKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYTISETPEAL 134 (134)
T ss_dssp EECCSSSSSCHHHHHHHTTCCTTCEEEEEEEEEECSSCCTTSSEEEEEEEEEEEEEEECCCSSC
T ss_pred EEeccccchhHHHHHHHhcCCCCCEEEEEEEEEeCCccCCCCCCCcEEEEEEEEEEEeCCCCCC
Confidence 9976433 56789999999999999999999999888877765 7799999999999999 664
|
| >d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Lysyl-tRNA synthetase (LysRS) species: Escherichia coli, gene lysU [TaxId: 562]
Probab=99.85 E-value=6.8e-22 Score=173.41 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=94.4
Q ss_pred CCCCCCcccccccCcceE-EeccccC---CCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHH
Q 013865 76 NDPQTGKWSEAVNGREWT-VVGALNG---SLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMV 151 (435)
Q Consensus 76 ~~~~p~~~~~~~~~~~~~-~i~~l~~---~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~ 151 (435)
+.||||+|+++++..++. .+..+.. ...+..|+|+|||+++|.+| |++|++|+|++++||++++.+ .++++.+
T Consensus 22 G~pYP~~~~~t~~~~ei~~~~~~~~~~~~~~~~~~V~vaGRI~~~R~~G-k~~F~~i~D~~g~iQi~~~~~--~~~~~~~ 98 (143)
T d1e1oa1 22 GVAFPNDFRRDHTSDQLHEEFDAKDNQELESLNIEVSVAGRMMTRRIMG-KASFVTLQDVGGRIQLYVARD--SLPEGVY 98 (143)
T ss_dssp SCSSCCCCCCSCCHHHHHHHHTTCCHHHHHHHCCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETT--TSSTTHH
T ss_pred CCCCCCCCcCCccHHHHHHHHhcccchhhhccCceEEEEEEEEEEcccC-CeeEEEEEeCCceEEEEEccc--cchhhhH
Confidence 569999999998875432 2222211 23477999999999999999 899999999999999999864 2344444
Q ss_pred -HHHhcCCCCcEEEEEEEEecCCcccCCCceeEEEEEeEEEEeecC-CCCC
Q 013865 152 -RFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRA-AKTP 200 (435)
Q Consensus 152 -k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~-~~lP 200 (435)
.+.+.+..||+|.|+|.+.++ .+|+++|.++++.+|++| +|||
T Consensus 99 ~~~~k~ld~GDiIgv~G~~~~T------ktGElsi~~~~~~lLsK~l~PLP 143 (143)
T d1e1oa1 99 NDQFKKWDLGDIIGARGTLFKT------QTGELSIHCTELRLLTKALRPLP 143 (143)
T ss_dssp HHTGGGCCTTCEEEEEEEEEEC------TTCCEEEEEEEEEEEECCSSCCC
T ss_pred HHHHhcCCcccEEEeecccEEC------CCCcEEEEeeEEEEeccccCCCC
Confidence 466899999999999999863 468999999999999999 9998
|
| >d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Archaeon Pyrococcus kodakaraensis [TaxId: 311400]
Probab=99.83 E-value=3e-20 Score=154.13 Aligned_cols=97 Identities=28% Similarity=0.419 Sum_probs=86.7
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|++|.+.+.|++|+|+|||+++|.+| +++|++|||+++.||||+..+ .++++++++++.|+.||+|.|+|+|..+
T Consensus 5 h~~~el~~~~~G~~V~v~Gwv~~~R~~g-~i~Fi~LrD~sg~iQ~v~~~~--~~~~~~~~~~~~l~~es~v~V~G~v~~~ 81 (103)
T d1b8aa1 5 HYSSEITEELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGIVQITAPKK--KVDPELFKLIPKLRSEDVVAVEGVVNFT 81 (103)
T ss_dssp CCGGGCCGGGTTCEEEEEEEEEEEEEET-TEEEEEEEETTEEEEEEEETT--TSCHHHHHHGGGCCTTCEEEEEEEEEEC
T ss_pred cChhhCChhHCCCEEEEEEEEehhccCC-CcEEEEEEcCCEeeeEEEecc--ccchhhhhHHhhCCcceEEEEEEEEEEC
Confidence 4678898889999999999999999999 899999999999999999854 4678999999999999999999999875
Q ss_pred CcccCCCceeEEEEEeEEEEeecC
Q 013865 173 DVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
++ .++++||++++|.|||+|
T Consensus 82 ~~----~~~~iEi~v~~i~ils~a 101 (103)
T d1b8aa1 82 PK----AKLGFEILPEKIVVLNRA 101 (103)
T ss_dssp TT----STTSEEEEEEEEEEEECB
T ss_pred CC----CCccEEEEeeEEEEEEec
Confidence 42 235699999999999987
|
| >d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-2 [TaxId: 274]
Probab=99.80 E-value=2e-19 Score=146.32 Aligned_cols=90 Identities=31% Similarity=0.386 Sum_probs=78.6
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|+||. .+.|++|+|+|||+++|.+| |++|++|||+++.+||+++.. ..+..||+|.|+|+|...
T Consensus 3 ~~I~dl~-~~~g~~V~v~GwV~~~R~~g-k~~Fi~LrD~sg~iQ~v~~~~------------~~~~~e~~v~v~G~v~~~ 68 (93)
T d1n9wa1 3 VLVRDLK-AHVGQEVELLGFLHWRRDLG-RIQFLLLRDRSGVVQVVTGGL------------KLPLPESALRVRGLVVEN 68 (93)
T ss_dssp CCGGGGG-GCTTSEEEEEEEEEEEEECS-SEEEEEEEETTEEEEEEEESC------------CCCCTTCEEEEEEEEEEC
T ss_pred EEhHHhh-hcCCCEEEEEEEEEeEEeCC-CcEEEEEEcCCccceEEeccc------------cccccceEEEEEEEEEEC
Confidence 4567774 47899999999999999999 899999999999999999853 246789999999999875
Q ss_pred CcccCCCceeEEEEEeEEEEeecC-CCCC
Q 013865 173 DVEIKGATQQVEVQIKKLYCVSRA-AKTP 200 (435)
Q Consensus 173 ~~~~~~~t~~lEi~v~~i~vls~~-~~lP 200 (435)
+ ..+|++||+++++.+|++| .+||
T Consensus 69 ~----~~~~~~Ei~v~~i~il~~a~~plP 93 (93)
T d1n9wa1 69 A----KAPGGLEVQAKEVEVLSPALEPTP 93 (93)
T ss_dssp T----TSTTSEEEEEEEEEEEECCCSCCC
T ss_pred C----CCCCCEEEEEeEEEEEecCCCCCC
Confidence 4 2357899999999999999 8888
|
| >d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Escherichia coli [TaxId: 562]
Probab=99.79 E-value=5.2e-19 Score=147.29 Aligned_cols=99 Identities=29% Similarity=0.386 Sum_probs=84.4
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|++|...+.|++|+|+|||+++|.+| +++|++|||+++.+||++... ..+.++.++.|+.||+|.|+|+|...
T Consensus 4 h~cgeL~~~~~g~~V~v~GWv~~~R~~g-~i~Fi~LRD~~G~~Q~v~~~~----~~~~~~~~~~l~~Es~v~V~G~V~~r 78 (106)
T d1c0aa1 4 EYCGQLRLSHVGQQVTLCGWVNRRRDLG-SLIFIDMRDREGIVQVFFDPD----RADALKLASELRNEFCIQVTGTVRAR 78 (106)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECGG----GHHHHHHHTTCCTTCEEEEEEEEEEC
T ss_pred eEcccCChHHCCCEEEEEEEEEEeeeCC-CcEEEEEEcCCeEEeEEeccc----chhHHHHHHhhCccceEEEEeEEecc
Confidence 4688898889999999999999999999 899999999999999999753 24567788899999999999999753
Q ss_pred Ccc---cCCCceeEEEEEeEEEEeecC
Q 013865 173 DVE---IKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 173 ~~~---~~~~t~~lEi~v~~i~vls~~ 196 (435)
+.. .+..+|++||++++|.||++|
T Consensus 79 ~~~~~n~~~~tg~iEi~v~~i~vl~~a 105 (106)
T d1c0aa1 79 DEKNINRDMATGEIEVLASSLTIINRA 105 (106)
T ss_dssp CTTTCCTTSTTTTEEEEEEEEEEEECC
T ss_pred CccccCCCCCCCcEEEEEeEEEEEeCC
Confidence 321 123457899999999999986
|
| >d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Anticodon-binding domain domain: Aspartyl-tRNA synthetase (AspRS) species: Thermus thermophilus, AspRS-1 [TaxId: 274]
Probab=99.78 E-value=6.6e-19 Score=146.05 Aligned_cols=98 Identities=27% Similarity=0.347 Sum_probs=84.1
Q ss_pred EEeccccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecC
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVP 172 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~ 172 (435)
+.|++|...+.|++|+|+|||+++|.+| +++|++|||+++.|||++.... +.++.++.|+.||+|.|+|+|...
T Consensus 5 h~~geL~~~~~g~~V~l~GWV~~~R~~g-~i~Fi~LRD~~G~iQ~v~~~~~-----~~~~~~~~l~~Es~I~V~G~V~~r 78 (104)
T d1l0wa1 5 HYAGSLRETHVGEEVVLEGWVNRRRDLG-GLIFLDLRDREGLVQLVAHPAS-----PAYATAERVRPEWVVRAKGLVRLR 78 (104)
T ss_dssp SCGGGCCGGGTTCEEEEEEEEEEEEECS-SCEEEEEEETTEEEEEEECTTS-----TTHHHHTTCCTTCEEEEEEEEEEC
T ss_pred cccccCChHHCCCEEEEEEEEEehhcCC-CeEEEEEECCCCceEEecccch-----hHHHHHhhcCcccEEEEEEEEeeC
Confidence 4788899899999999999999999999 9999999999999999997542 345677899999999999999754
Q ss_pred Ccc-cCCCceeEEEEEeEEEEeecC
Q 013865 173 DVE-IKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 173 ~~~-~~~~t~~lEi~v~~i~vls~~ 196 (435)
+.. .+..+|++||+++++.||++|
T Consensus 79 ~~~n~~~~tG~iEi~v~~i~iL~~a 103 (104)
T d1l0wa1 79 PEPNPRLATGRVEVELSALEVLAEA 103 (104)
T ss_dssp SSCCTTSTTTTEEEEEEEEEEEECC
T ss_pred CccCCCCCCCCEEEEEeEEEEEEcC
Confidence 332 233468899999999999986
|
| >d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Lactococcus lactis [TaxId: 1358]
Probab=97.98 E-value=1e-05 Score=77.17 Aligned_cols=117 Identities=19% Similarity=0.237 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC------CCCC----cceeEe-ccCCCceeec--cChHH---HHhhh
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS------SEGG----SAVFRL-DYKGQSACLA--QSPQL---HKQMS 309 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~------~egg----a~~F~v-~~~~~~~~L~--~Spql---~lq~~ 309 (435)
.-.+.+..|.+.+++.|..+||.+|.||++.... ..++ -+.|++ +.-|+.+.|| ..+++ +.+.
T Consensus 13 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~~E~~d~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iaR~~~~~- 91 (318)
T d1z7ma1 13 NQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKMFQFIKHEGQSITLRYDFTLPLVRLYSQI- 91 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEHHHHHHHHCSSSCCCTTSCCEEECTTCCEEEECCCSHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEECCccchHHHhhccCCCcccccccceeEeecCCccEEEeeccccchHHHHHHHh-
Confidence 3455667799999999999999999999984321 1111 124554 4467888887 23444 3221
Q ss_pred ccCCCceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 310 ICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 310 i~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
-.....|+|++|+|||.+.. ...+..||+|+.+|+-..++. -|++.++-+++..
T Consensus 92 ~~~~~~r~~Y~g~vfR~~~~-~~~r~rE~~Q~g~EiiG~~~~~ad~Eii~l~~e~l~~ 148 (318)
T d1z7ma1 92 KDSTSARYSYFGKIFRKEKR-HKGRSTENYQIGIELFGESADKSELEILSLALQVIEQ 148 (318)
T ss_dssp CSCCCEEEEEEEECCCCCC--------CCEEEEEEEESSCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcccccccceeEEccc-cccccchhhhhheeccccchhhHHHHHHHHHHHHHHH
Confidence 12345699999999999985 444567999999998765422 2345555555543
|
| >d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS species: Thermus thermophilus [TaxId: 274]
Probab=97.98 E-value=1.4e-05 Score=74.94 Aligned_cols=112 Identities=16% Similarity=0.175 Sum_probs=76.0
Q ss_pred HHHHHHHHhhcCCeEEeeCceeeccC----------CCCCcc---eeEecc------------CCCceeec--cChHHHH
Q 013865 254 VGNIFRQFLLSENFVEIHTPKLIAGS----------SEGGSA---VFRLDY------------KGQSACLA--QSPQLHK 306 (435)
Q Consensus 254 i~~~~r~fl~~~gF~EV~TP~l~~~~----------~egga~---~F~v~~------------~~~~~~L~--~Spql~l 306 (435)
+++.|+++|.+.||-++..|.+.+.- -.++-+ .|-++. .....-|| +|+--..
T Consensus 22 ~~~~i~~if~~~GF~~~~gp~ies~~~NFDaLn~P~dHPAR~~~DTfYi~~~~~~~~~~~~~~~~~~~lLRTHTS~~q~r 101 (266)
T d1jjca_ 22 MERELVEIFRALGYQAVEGPEVESEFFNFDALNIPEHHPARDMWDTFWLTGEGFRLEGPLGEEVEGRLLLRTHTSPMQVR 101 (266)
T ss_dssp HHHHHHHHHHTTTCEECCCCSEEEHHHHTGGGTCCTTSGGGGGSCCCBEECSSCCEECTTSCEECSCEEECSSSTHHHHH
T ss_pred HHHHHHHHHHHcCCeEeeCCccccchhhhhcccCCcccchhcccceEEEecccccccCcccccchhhhhhccCCcHHHHH
Confidence 67788899999999999999875320 111111 232221 01234566 5553333
Q ss_pred hhhccCCC--ceeEEEecceecCCCCCCccccccccceeeeecc-ccHHHHHHHHHHHHHHHHhh
Q 013865 307 QMSICGDF--GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIK-KHYSEVMDIVDRLFVTIFDG 368 (435)
Q Consensus 307 q~~i~~g~--~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~-~~~~d~m~~~e~li~~i~~~ 368 (435)
.| ..+. -|++.+|+|||+|.. +.+|+|+|.|+|.-+... -+..+++..++.+++.++..
T Consensus 102 ~~--~~~~~p~~~~~~g~VyRrd~i-D~tH~p~FhQ~eg~~vd~~~~~~~Lk~~l~~~~~~~f~~ 163 (266)
T d1jjca_ 102 YM--VAHTPPFRIVVPGRVFRFEQT-DATHEAVFHQLEGLVVGEGIAMAHLKGAIYELAQALFGP 163 (266)
T ss_dssp HH--HHSCSSEEEEEEEEEECCSCC-CSSCCSEEEEEEEEEEETTCCHHHHHHHHHHHHHHHHCT
T ss_pred HH--hccCCCceEEecccceecCCC-CCcccccceeeeeeeccccccHHHHHHHHHHHHHHhcCC
Confidence 32 2233 489999999999995 899999999999865542 24788999999999888753
|
| >d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Escherichia coli [TaxId: 562]
Probab=97.86 E-value=1.7e-05 Score=75.48 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CC-----CcceeEeccCCCceeeccChHHHHhhhccC------
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EG-----GSAVFRLDYKGQSACLAQSPQLHKQMSICG------ 312 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---eg-----ga~~F~v~~~~~~~~L~~Spql~lq~~i~~------ 312 (435)
=.+++.+|.+.+|+.+.+.||.||.||.|+.... .| +.+.|.+.--+..++|+-..+-..=.+...
T Consensus 29 G~~l~~~L~~~i~e~~~~~G~~eV~~P~L~~~~l~~~sG~~~~~~~~~~~~~~~~~~~~L~Pt~e~~~~~~~~~~~~sy~ 108 (291)
T d1qf6a4 29 GWTIFRELEVFVRSKLKEYQYQEVKGPFMMDRVLWEKTGHWDNYKDAMFTTSSENREYCIKPMNCPGHVQIFNQGLKSYR 108 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECCCCSEEETHHHHHHSHHHHHGGGCEEEEETTEEEEECSSSHHHHHHHHTTSCEEGG
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEcccccchhHHhhhchhhhccchhccccccchhhcccccCcHHHHHHHHccccchh
Confidence 3567789999999999999999999999986531 12 334666666678899998776443323221
Q ss_pred CC-ceeEEEecceecCCCC---CCccccccccceeeeeccccHHHHHHHHHHHH
Q 013865 313 DF-GRVFETGPVFRAEDSY---THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 313 g~-~rVfeIgp~FR~E~s~---t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
.+ -|+|++++|||+|.+. +..=.-||+|.|.+. |.. -++.++.+.+++
T Consensus 109 ~LPl~~~q~~~~fR~E~~~~~~Gl~R~reF~~~d~h~-f~~-~e~~~~e~~~~~ 160 (291)
T d1qf6a4 109 DLPLRMAEFGSCHRNEPSGSLHGLMRVRGFTQDDAHI-FCT-EEQIRDEVNGCI 160 (291)
T ss_dssp GCSEEEEEEEEEECCCCGGGCBTTTBCSEEEEEEEEE-EEC-GGGHHHHHHHHH
T ss_pred hcCeeEeecceeeecccccccccccccccceecccee-Eec-chhhHHHHHHHH
Confidence 12 3899999999999531 333467999999988 432 244455454444
|
| >d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Threonyl-tRNA synthetase (ThrRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.73 E-value=2.4e-05 Score=74.36 Aligned_cols=115 Identities=17% Similarity=0.142 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCCC---C-----CcceeEecc--CCCceeeccChHHHHhhhccC----
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSE---G-----GSAVFRLDY--KGQSACLAQSPQLHKQMSICG---- 312 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~e---g-----ga~~F~v~~--~~~~~~L~~Spql~lq~~i~~---- 312 (435)
=.+++.+|.+++|+.+.+.||.||.||.|.....- | +.+.|.+.. -+.+++|+-..+-..-.+...
T Consensus 29 G~~l~~~L~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sG~~~~~~~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~~~~s 108 (291)
T d1nyra4 29 GATIRREIERYIVDKEVSMGYDHVYTPVLANVDLYKTSGHWDHYQEDMFPPMQLDETESMVLRPMNCPHHMMIYANKPHS 108 (291)
T ss_dssp HHHHHHHHHHHHHHHHHHTTEEECBCCSEEETHHHHHHTHHHHCTTSSCCCEEETTTEEEEECSSSHHHHHHHHHTSCCB
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEECccccchhHhhhhccccccccceEEEeeccccccccccccchhHHHHhhhcEecc
Confidence 35778899999999999999999999999865321 1 223444322 356789998876665543322
Q ss_pred --CCc-eeEEEecceecCCCCC---CccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 313 --DFG-RVFETGPVFRAEDSYT---HRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 313 --g~~-rVfeIgp~FR~E~s~t---~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
.+. |+|++++|||+|.+.+ ..=.-+|+|.|.+.- .. .++..+.++.++.
T Consensus 109 y~dLPlr~~~~~~~fR~E~~~~~~Gl~Rvr~F~~~d~~~f-~~-~eq~~~e~~~~~~ 163 (291)
T d1nyra4 109 YRELPIRIAELGTMHRYEASGAVSGLQRVRGMTLNDSHIF-VR-PDQIKEEFKRVVN 163 (291)
T ss_dssp GGGCCEEEEEEEEEECCCCTTTCBTTTBCSEEEEEEEEEE-EC-GGGHHHHHHHHHH
T ss_pred ccccceEEeeccceeecCCCcccccccceeeeeeeeheee-cC-CcccHHHHHHHHH
Confidence 232 9999999999998532 223459999998754 32 3444444444443
|
| >d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.67 E-value=0.00012 Score=69.94 Aligned_cols=104 Identities=14% Similarity=0.146 Sum_probs=71.6
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC---CCC----cceeEe-ccCCCceeec--cChHHHHhhhccCC--
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS---EGG----SAVFRL-DYKGQSACLA--QSPQLHKQMSICGD-- 313 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~---egg----a~~F~v-~~~~~~~~L~--~Spql~lq~~i~~g-- 313 (435)
.-...+..|...+++.|.++||.+|.||+|-...+ ..| .+.|++ +--|+.+.|| ..|+.-.-.+-..+
T Consensus 16 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~f~D~~g~~l~LRpD~T~~iar~~~~~~~~~ 95 (327)
T d1wu7a2 16 EDMDVEKFIFKTAEEAAEAFGFRRIDFPSLEYLDLYRIKSGEELLQQTYSFVDKGGREVTLIPEATPSTVRMVTSRKDLQ 95 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECBCCSEEETHHHHTTSCTTGGGGSCEEECTTSCEEEECSCSHHHHHHHHTTCTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeECCccchHhhccccCchhHHHHHhhhhcccchhhcccccccchhhhHhhhhhhcc
Confidence 45566788999999999999999999998854321 112 225654 4468888888 23333221111112
Q ss_pred C-ceeEEEecceecCCCCCCccccccccceeeeecccc
Q 013865 314 F-GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKH 350 (435)
Q Consensus 314 ~-~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~ 350 (435)
. -|+|.+|+|||.+.. ...+.-||+|+.+|+-..++
T Consensus 96 ~p~k~~y~g~VfR~~~~-~~g~~re~~Q~G~EiiG~~~ 132 (327)
T d1wu7a2 96 RPLRWYSFPKVWRYEEP-QAGRYREHYQFNADIFGSDS 132 (327)
T ss_dssp SSEEEEECCEEECCCCS-CSSCCSEEEEEEEEEESCCS
T ss_pred ccceeeccCcceecccc-ccCCcchhhhhhhhhcCCcc
Confidence 2 399999999999985 44456799999999887654
|
| >d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Staphylococcus aureus [TaxId: 1280]
Probab=97.66 E-value=3.9e-05 Score=73.23 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC----CCCc------ceeEe-ccCCCceeeccChHHHHhhhcc---
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS----EGGS------AVFRL-DYKGQSACLAQSPQLHKQMSIC--- 311 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~----egga------~~F~v-~~~~~~~~L~~Spql~lq~~i~--- 311 (435)
.-.+.+..|.+.+++.|..+||.+|.||++-...+ -|.. ..|.+ +..+....|+..+..-..++++
T Consensus 14 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~~~~~~~lr~d~t~~~~r~~~~~~ 93 (325)
T d1qe0a2 14 EDSKKWRYIENQLDELMTFYNYKEIRTPIFESTDLFARGVGDSTDVVQKEMYTFKDKGDRSITLRPEGTAAVVRSYIEHK 93 (325)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCEECBCCSEEEHHHHCC-----------CCEEECHHHHCCEEECSCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCcccccHHHhccccCCchhHHHHHHhhhhccccccccccccccccHHHHHHhhc
Confidence 34577889999999999999999999999864321 1111 13333 2345677777554433333221
Q ss_pred --CCC---ceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHH
Q 013865 312 --GDF---GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFV 363 (435)
Q Consensus 312 --~g~---~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~ 363 (435)
+.. -|+|.+|+|||.+.....|+ -||+|+.+|+-..++. -|++.++-+.+.
T Consensus 94 ~~~~~~~p~R~~Y~g~VfR~~~~~~~~~-rE~~Q~G~EiiG~~~~~ad~Eii~l~~~~l~ 152 (325)
T d1qe0a2 94 MQGNPNQPIKLYYNGPMFRYERKQKGRY-RQFNQFGVEAIGAENPSVDAEVLAMVMHIYQ 152 (325)
T ss_dssp GGGCSSCSEEEEEEEEEECC-------C-CEEEEEEEEEESCCCHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhheecceeeeccccCCcc-ceeeecceeecCCcCcHHHHHHHHHHHHHHH
Confidence 112 39999999999998644444 6999999998876543 245555555544
|
| >d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]
Probab=97.64 E-value=0.00017 Score=67.31 Aligned_cols=114 Identities=19% Similarity=0.230 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccC----CCC-----CcceeEeccCC-----CceeeccChH-----HHHh
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS----SEG-----GSAVFRLDYKG-----QSACLAQSPQ-----LHKQ 307 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~----~eg-----ga~~F~v~~~~-----~~~~L~~Spq-----l~lq 307 (435)
=++++..|.+.+|+-+.+.||.||.||.|.+.. +.+ +.+.|.+.+-+ .+++|+...+ +|+.
T Consensus 34 G~~i~~~i~~~i~~~~~~~G~~ev~~P~l~~~~l~~ks~~~~~~~~~~~~~~~~~~~~~~~~~~~L~P~~~~~~~~i~~~ 113 (268)
T d1nj8a3 34 GFKIRRYTFEIIRNLLDESGHDEALFPMLIPEDLLAKEAEHIKGFEDEVYWVTHGGKTQLDVKLALRPTSETPIYYMMKL 113 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEEHHHHHHHCSSSGGGGGGCEEEEESSSSEEEEEEEECSSSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEeehhhhhhHhhhccCCCccccccceeEEeccccccchhhhhcccCCCchhHHhhhh
Confidence 346788999999999999999999999987432 111 12245554433 3589987664 3444
Q ss_pred hhccC-CC-ceeEEEecceecCCCCCCc---cccccccce-eeeeccccHHHHHHHHHHHH
Q 013865 308 MSICG-DF-GRVFETGPVFRAEDSYTHR---HLCEFTGLD-VEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 308 ~~i~~-g~-~rVfeIgp~FR~E~s~t~r---Hl~EFt~lE-~e~a~~~~~~d~m~~~e~li 362 (435)
...+- .+ =|+|++|+|||+|.+ ..+ =.-||++.| .+....+ -++..+..+.++
T Consensus 114 ~~~Syr~LP~r~~e~~~~fR~E~~-~~~GllR~reF~~~dd~~~~~~~-~~~~~~~~~~~~ 172 (268)
T d1nj8a3 114 WVKVHTDLPIKIYQIVNTFRYETK-HTRPLIRLREIMTFKEAHTAHST-KEEAENQVKEAI 172 (268)
T ss_dssp TCCBTTSCCCCEEEEECCBCCCCS-CCBTTTBCSBCSCEEEEEEEESS-HHHHHHHHHHHH
T ss_pred hccchhhhheEEeecccccccccc-ccccceeEEEEeeechhceeccc-cchhhHHHHHHH
Confidence 33221 22 399999999999953 221 245897555 5554443 455555555544
|
| >d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.53 E-value=0.00013 Score=67.42 Aligned_cols=116 Identities=12% Similarity=0.093 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-C--C------CcceeEecc-----CCCceeeccChH-----HHHh
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-E--G------GSAVFRLDY-----KGQSACLAQSPQ-----LHKQ 307 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-e--g------ga~~F~v~~-----~~~~~~L~~Spq-----l~lq 307 (435)
=.+++.+|.+.+++.+.+.||.||.||.|..... . | +.+.|.+.. -+.+++|+-+.+ +|+.
T Consensus 39 G~~l~~~l~~~~~~~~~~~G~~eV~~P~l~~~~l~~~sg~~~~~~~~~m~~~~~~~~~~~~~~~~L~pt~e~~~~~~~~~ 118 (272)
T d1hc7a2 39 GYAIWENIQQVLDRMFKETGHQNAYFPLFIPMSFLRKEAEHVEGFSPELAVVTHAGGEELEEPLAVRPTSETVIGYMWSK 118 (272)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCEECBCCSEEESTTC---------CCTTCEEEEEESSSEEEEEEEECSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCeEEeeccccchHHhhhcccchhhcccceeeeeccccccccchhhcccccccceeehhhc
Confidence 3588899999999999999999999998875442 1 1 112454432 235689987776 4444
Q ss_pred hhcc-CCC-ceeEEEecceecCCCCCC-ccccccccceeeeeccccHHHHHHHHHHHHH
Q 013865 308 MSIC-GDF-GRVFETGPVFRAEDSYTH-RHLCEFTGLDVEMEIKKHYSEVMDIVDRLFV 363 (435)
Q Consensus 308 ~~i~-~g~-~rVfeIgp~FR~E~s~t~-rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~ 363 (435)
.... ..+ -|+|++++|||+|.+... .=.-+|++.+.++-..+ ..+.....+.++.
T Consensus 119 ~~~s~~~LPlr~~~~~~~fR~E~~~~g~~r~r~~~~~~~~~~~~~-~~~~~~~~~~~~~ 176 (272)
T d1hc7a2 119 WIRSWRDLPQLLNQWGNVVRWEMRTRPFLRTSEFLWQEGHTAHAT-REEAEEEVRRMLS 176 (272)
T ss_dssp HCCBGGGCCEEEEEEEEEECCCSSCBTTTBCSEEEEEEEEEEESS-HHHHHHHHHHHHH
T ss_pred eeccccccceeeeecccccccccccccccceEEEEEEhhhhhhcc-cccchhHHHHHHH
Confidence 3322 123 399999999999975321 12247889999987664 5555555554443
|
| >d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Escherichia coli [TaxId: 562]
Probab=97.28 E-value=0.00061 Score=64.49 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC----CCCc------ceeEe-ccCCCceeeccC--hHHHHh---hhc
Q 013865 247 IFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS----EGGS------AVFRL-DYKGQSACLAQS--PQLHKQ---MSI 310 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~----egga------~~F~v-~~~~~~~~L~~S--pql~lq---~~i 310 (435)
-.+.|..|.+.+++.|..+||.+|.||++-...+ -|.. ..+.. +.-|+.+.||-- +++-.- ...
T Consensus 15 ~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~~~~~~g~~~~~~~~~~~~~~d~~g~~l~Lr~D~T~~iaR~~~~~~~ 94 (322)
T d1kmma2 15 ETAIWQRIEGTLKNVLGSYGYSEIRLPIVEQTPLFKRAIGEVTDVVEKEMYTFEDRNGDSLTLRPEGTAGCVRAGIEHGL 94 (322)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCEECBCCSEEEHHHHHHHHCTTSHHHHHTCEEEECTTSCEEEECSCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHCCCeEeECcccccHHHhhcccCcchhhhHHHHhhhhhcccccccccccccchhhHHHHhhhh
Confidence 4456778999999999999999999999864321 1111 12333 445788888843 333332 111
Q ss_pred c-CCCceeEEEecceecCCCCCCccccccccceeeeeccccH
Q 013865 311 C-GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY 351 (435)
Q Consensus 311 ~-~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~ 351 (435)
. ..--|.|.+|+|||.+.....| .-||+++.+|.-..++.
T Consensus 95 ~~~~p~r~~y~g~v~r~~~~~~gr-~re~~Q~g~EiiG~~~~ 135 (322)
T d1kmma2 95 LYNQEQRLWYIGPMFRHERPQKGR-YRQFHQLGCEVFGLQGP 135 (322)
T ss_dssp STTCCEEEEEEEEEECCCCCBTTB-CSEEEEEEEEEESCCSH
T ss_pred hhhhhhhHhhcccccccCCCCCCc-cchhhhhhHHHhccccc
Confidence 1 1234899999999999864444 47999999998775543
|
| >d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Histidyl-tRNA synthetase (HisRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.28 E-value=0.00068 Score=64.34 Aligned_cols=117 Identities=19% Similarity=0.303 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC--C--CC------cceeEe-ccCCCceeecc--ChHHHHhhhccC
Q 013865 246 GIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS--E--GG------SAVFRL-DYKGQSACLAQ--SPQLHKQMSICG 312 (435)
Q Consensus 246 ~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~--e--gg------a~~F~v-~~~~~~~~L~~--Spql~lq~~i~~ 312 (435)
.-.+.|..|.+.+++.|..+||.+|.||++-.... . |. ...|.+ +.-|+.+.||- .+++..- ++..
T Consensus 14 ~~~~~~~~i~~~l~~~f~~~Gy~~I~tP~lE~~d~l~~~~g~~~~~~~~~~~~~~d~~g~~l~LRpD~T~~iar~-~~~~ 92 (324)
T d1h4vb2 14 KELRMHQRIVATARKVLEAAGALELVTPIFEETQVFEKGVGAATDIVRKEMFTFQDRGGRSLTLRPEGTAAMVRA-YLEH 92 (324)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCEECCCCSEEEGGGGCCCSCC------CCSCEEECTTSCEEEECCCSHHHHHHH-HHHT
T ss_pred HHHHHHHHHHHHHHHHHHHcCCeEeeCCccccHHHhhcccCCchhHHHHHHhhhhccCCcccccccccccHHHHH-HHHh
Confidence 45677888999999999999999999999854321 1 11 123433 33578888882 2333332 1112
Q ss_pred C---C---ceeEEEecceecCCCCCCccccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 313 D---F---GRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 313 g---~---~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
+ . -|.|.+|+|||.+... ....-||+|+++|.-..++. -+++.++-+.+..
T Consensus 93 ~~~~~~~p~r~~Y~g~VfR~~~~~-~gr~re~~Q~g~EiiG~~~~~ad~Eii~l~~~~l~~ 152 (324)
T d1h4vb2 93 GMKVWPQPVRLWMAGPMFRAERPQ-KGRYRQFHQVNYEALGSENPILDAEAVVLLYECLKE 152 (324)
T ss_dssp TGGGSSSSEEEEEEEEEECCCCC-----CCEEEEEEEEEESCCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhchhhhheeeCcccccCccc-CCCcceeccccccccCCCChHHHHHHHHHHHHHHHH
Confidence 2 2 3999999999999853 33458999999998765433 2345555554443
|
| >d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Seryl-tRNA synthetase (SerRS) species: Thermus thermophilus, strain hb27 [TaxId: 274]
Probab=97.19 E-value=0.0016 Score=62.05 Aligned_cols=118 Identities=12% Similarity=0.170 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCeEEeeCceeeccCC-CC-C------cceeEeccCCCceeeccChHHHHhhhcc-----
Q 013865 245 QGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSS-EG-G------SAVFRLDYKGQSACLAQSPQLHKQMSIC----- 311 (435)
Q Consensus 245 ~~i~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~~-eg-g------a~~F~v~~~~~~~~L~~Spql~lq~~i~----- 311 (435)
....++.-++++++.+++.++||.||.||.|..... +| | .+.|.+ -+.+.||.-..+..+=.+..
T Consensus 53 g~~a~Le~AL~~~~ld~~~~~gy~~v~~P~lv~~~~~~~~G~~p~f~~~~y~~--~~~~~~LipTsE~~l~~~~~~~i~~ 130 (311)
T d1seta2 53 GDLALYELALLRFAMDFMARRGFLPMTLPSYAREKAFLGTGHFPAYRDQVWAI--AETDLYLTGTAEVVLNALHSGEILP 130 (311)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCEEEECCSEEEHHHHHHHTCTTTTGGGSCBB--TTSSEEECSSTHHHHHHTTTTCEEE
T ss_pred CHHHHHHHHHHHHHHHhhhcccceEEeechhhccchhhhcccccccccccccc--cccceeecccccchhhhhhhhhhhh
Confidence 467778889999999999999999999999985432 11 1 113433 35688998555544332211
Q ss_pred -CCCc-eeEEEecceecCCCC------CCccccccccceeeeeccccHHHHHHHHHHHHHH
Q 013865 312 -GDFG-RVFETGPVFRAEDSY------THRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVT 364 (435)
Q Consensus 312 -~g~~-rVfeIgp~FR~E~s~------t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~ 364 (435)
..+. |++.++||||.|.+. +.-...+|+.+|....-..+.++.....++++..
T Consensus 131 ~~~LPlr~~~~s~cfR~Eag~~g~~trGL~RvhQF~kvE~~~~~~~~~e~s~~~~~~~~~~ 191 (311)
T d1seta2 131 YEALPLRYAGYAPAFRSEAGSFGKDVRGLMRVHQFHKVEQYVLTEASLEASDRAFQELLEN 191 (311)
T ss_dssp GGGCSEEEEEEEEEECCCCSCTTSSCSTTSSCSEEEEEEEEEEECSCHHHHHHHHHHHHHH
T ss_pred hhhccceEEeecccchhhhccccccchhhhhhcccchhhhheeeccccccchhHHHHHHHH
Confidence 1232 799999999999632 3345679999998654333356666666666544
|
| >d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Prolyl-tRNA synthetase (ProRS) species: Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]
Probab=97.10 E-value=0.00064 Score=62.89 Aligned_cols=107 Identities=20% Similarity=0.226 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHhhcCCeEEeeCceeeccC-C--CC------CcceeEeccC-----CCceeeccChHH-----HHhh
Q 013865 248 FRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS-S--EG------GSAVFRLDYK-----GQSACLAQSPQL-----HKQM 308 (435)
Q Consensus 248 ~~~rs~i~~~~r~fl~~~gF~EV~TP~l~~~~-~--eg------ga~~F~v~~~-----~~~~~L~~Spql-----~lq~ 308 (435)
++++..|.+.+|+.+ ++||.||.||.|++.. . .+ +.+.|.+.+- +.+++|+-+.+- |+..
T Consensus 33 ~~i~~~i~~~~~~~~-~~G~~ev~~P~l~~~~~l~~~sgh~~~~~~e~f~~~~~~~~~~~~~~~L~pt~~~~~~~~~~~~ 111 (265)
T d1nj1a3 33 FMIRKNTLKILRRIL-DRDHEEVLFPLLVPEDELAKEAIHVKGFEDEVYWVTHGGLSKLQRKLALRPTSETVMYPMFALW 111 (265)
T ss_dssp HHHHHHHHHHHHHHH-TTTCEECCCCSEEEHHHHTTSHHHHHHTTTTCCEEEEETTEEEEEEEEECSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HhcCceehhhhhhhhhhhhhcccccccccccceeeeccCccccceeEEeecccccceEEeeeee
Confidence 366788999999876 5699999999886442 1 11 2356776432 356889876643 3333
Q ss_pred hcc-CCC-ceeEEEecceecCCCCC--Ccccccccccee-eeeccccHHHHHH
Q 013865 309 SIC-GDF-GRVFETGPVFRAEDSYT--HRHLCEFTGLDV-EMEIKKHYSEVMD 356 (435)
Q Consensus 309 ~i~-~g~-~rVfeIgp~FR~E~s~t--~rHl~EFt~lE~-e~a~~~~~~d~m~ 356 (435)
... -.+ =|+|++|+|||+|.+.+ ..=.-|||+++- +....+ -++...
T Consensus 112 ~~SyrdLPlr~~q~~~~fR~E~~~~~Gl~R~reF~~~~d~~~~~~~-~~~~~~ 163 (265)
T d1nj1a3 112 VRSHTDLPMRFYQVVNTFRYETKHTRPLIRVREITTFKEAHTIHAT-ASEAEE 163 (265)
T ss_dssp CCBTTTCCEEEEEEEEEECCCCSCCBTTTBCSEEEEEEEEEEEESS-HHHHHH
T ss_pred eccccccceEEEeeccceeeecccCcCCEEEEEEEEeccceeecCC-HHHHHH
Confidence 222 234 38999999999995311 112458986654 443343 344333
|
| >d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=97.09 E-value=0.00062 Score=65.35 Aligned_cols=116 Identities=14% Similarity=0.150 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHHh--hcCCeEEeeCceeeccC---CCCCcce-----------------------eEec-----cCC
Q 013865 247 IFRIQSQVGNIFRQFL--LSENFVEIHTPKLIAGS---SEGGSAV-----------------------FRLD-----YKG 293 (435)
Q Consensus 247 i~~~rs~i~~~~r~fl--~~~gF~EV~TP~l~~~~---~egga~~-----------------------F~v~-----~~~ 293 (435)
=.++|..|.+.+|+.| .+.|+.||.||+|++.. .-|.-.. |.++ .-+
T Consensus 38 G~~l~~~i~~~wr~~~v~~~~~~~ev~tp~i~~~~lw~~SGH~~~f~d~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (331)
T d1b76a2 38 GVELKNNLKQAWWRRNVYERDDMEGLDASVLTHRLVLHYSGHEATFADPMVDNAKARYWTPPRYFNMMFQDLRGPRGGRG 117 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSEEEEBCCSEEEHHHHHHTSHHHHCEEEECBSSSCBCCCCCEEEECCEEEECSSSCCGG
T ss_pred HHHHHHHHHHHHHHHHHhccCCeEEEeccccCChHHhccCccccccCCceeeecccccccCccchhhccccccccccccC
Confidence 4577899999999987 46799999999997642 0111111 1111 113
Q ss_pred Cceeec--cChHHHHhh---h--ccCCCc-eeEEEecceecCCCCCCc---cccccccceeeeeccccHHHHHHHHHHHH
Q 013865 294 QSACLA--QSPQLHKQM---S--ICGDFG-RVFETGPVFRAEDSYTHR---HLCEFTGLDVEMEIKKHYSEVMDIVDRLF 362 (435)
Q Consensus 294 ~~~~L~--~Spql~lq~---~--i~~g~~-rVfeIgp~FR~E~s~t~r---Hl~EFt~lE~e~a~~~~~~d~m~~~e~li 362 (435)
...||+ .++..+... . .-..+. |+||||.|||+|-+ ... =.-||||.|.+.=.. -++..+.....+
T Consensus 118 ~~~~lr~~t~~~~~~~~~~~~~~syk~LP~~~aqig~~fR~E~s-~~~gl~RvReFtq~D~~~F~~--~~q~~~~~~~~~ 194 (331)
T d1b76a2 118 LLAYLRPETAQGIFVNFKNVLDATSRKLGFGIAQIGKAFRNEIT-PRNFIFRVREFEQMEIEYFVR--PGEDEYWHRYWV 194 (331)
T ss_dssp GEEEECSCTHHHHHTTHHHHHHHHTCCSSEEEEEEEEEECCCSS-CCTTTTSCSEEEEEEEEEEEC--GGGHHHHHHHHH
T ss_pred CcccccCcchhhHHHHHHhHHhccccccchhhhhccceeccccc-ccccccccchhhhhhhhhhcC--CcchhHHHHHHH
Confidence 566777 333333321 1 112343 89999999999975 222 235999999987543 245555444444
Q ss_pred HHH
Q 013865 363 VTI 365 (435)
Q Consensus 363 ~~i 365 (435)
..+
T Consensus 195 ~~~ 197 (331)
T d1b76a2 195 EER 197 (331)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: ATP phosphoribosyltransferase regulatory subunit HisZ species: Thermotoga maritima [TaxId: 2336]
Probab=96.85 E-value=0.0017 Score=60.26 Aligned_cols=98 Identities=19% Similarity=0.191 Sum_probs=63.9
Q ss_pred HHhhcCCeEEeeCceeeccCCCCCcceeEeccCCCceeec--cChHHHHhhhccCCC---ceeEEEecceecCCCCCCcc
Q 013865 260 QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLA--QSPQLHKQMSICGDF---GRVFETGPVFRAEDSYTHRH 334 (435)
Q Consensus 260 ~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~--~Spql~lq~~i~~g~---~rVfeIgp~FR~E~s~t~rH 334 (435)
+-..++||-+|.||.+-......+ ..| .+--|+.+.|| ..+++-.- +...+. -|+|.+|+|||.++. +
T Consensus 14 ~~~~~~Gy~~i~tP~~E~~e~~~~-~~F-~D~~g~~l~LRpD~T~~iaR~-~~~~~~~~p~k~~Y~g~VfR~~~~----~ 86 (275)
T d1usya_ 14 SKATKKGFSPFFVPALEKAEEPAG-NFF-LDRKGNLFSIREDFTKTVLNH-RKRYSPDSQIKVWYADFVYRYSGS----D 86 (275)
T ss_dssp HHHHHTTCEECCCCSEEECSSCCS-SCE-EETTSCEEEECCCHHHHHHHH-HTTCTTCCCEEEECCEEEEEEETT----E
T ss_pred HHHHHcCCceeecCcccccccccc-cee-EcCCCCEEEECCCCcHHHHHH-HHHcCCCCCeeeeEEeeEEEeCCC----c
Confidence 344578999999999986543332 234 45567888888 44555442 221122 299999999998764 3
Q ss_pred ccccccceeeeeccccH---HHHHHHHHHHHHH
Q 013865 335 LCEFTGLDVEMEIKKHY---SEVMDIVDRLFVT 364 (435)
Q Consensus 335 l~EFt~lE~e~a~~~~~---~d~m~~~e~li~~ 364 (435)
.-||+|+.+|.-..++. -|++.++-++++.
T Consensus 87 ~re~~Q~G~EiiG~~~~~aD~Evi~l~~~~l~~ 119 (275)
T d1usya_ 87 LVAEYQLGLEKVPRNSLDDSLEVLEIIVESASE 119 (275)
T ss_dssp EEEEEEEEEEEESCCSHHHHHHHHHHHHHHHHH
T ss_pred ccceeecCceeechhhHHHHHHHHHHHHHHHHh
Confidence 56999999998654332 3556666666554
|
| >d1jmca1 b.40.4.3 (A:183-298) Replication protein A 70 KDa subunit (RPA70) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 70 KDa subunit (RPA70) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.45 E-value=0.0044 Score=50.11 Aligned_cols=96 Identities=11% Similarity=0.159 Sum_probs=65.9
Q ss_pred EEeccccCCCCCCEEEEEEEEeee------ecC-C-CceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEE
Q 013865 93 TVVGALNGSLKDQEVLIRGRVHTT------RPV-G-NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVD 164 (435)
Q Consensus 93 ~~i~~l~~~~~g~~V~v~GrV~~~------R~~-G-~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~ 164 (435)
+.|.+|.+. ...++|.|||.++ |.. | .++.-++|-|.+|.|++++-.+ ...+|...|..|++..
T Consensus 3 ~PI~~L~p~--~~~~~I~~RV~~k~~~r~f~~~~~~g~v~~~~l~De~G~I~~t~~~~------~~~~f~~~l~~G~vy~ 74 (116)
T d1jmca1 3 VPIASLTPY--QSKWTICARVTNKSQIRTWSNSRGEGKLFSLELVDESGEIRATAFNE------QVDKFFPLIEVNKVYY 74 (116)
T ss_dssp CCGGGCCTT--CCCCEEEEEEEEECCCEEEECSSCEEEEEEEEEECSSCEEEEEEEHH------HHHHHGGGCCTTCEEE
T ss_pred EeHHHcCCC--CCCEEEEEEEEEeccceEEECCCCCceEEEEEEEcCCCCEEEEEchh------hhhhhHhhcccCCEEE
Confidence 456677653 3357889999653 222 2 1677788999999999999732 3346778899999999
Q ss_pred EEE-EEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 165 VIG-VVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 165 V~G-~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
|.| .|+.....-+...+.+||....-..+.+|
T Consensus 75 i~~~~V~~~~~~y~~~~~~yei~f~~~T~I~~~ 107 (116)
T d1jmca1 75 FSKGTLKIANKQFTAVKNDYEMTFNNETSVMPC 107 (116)
T ss_dssp EECCEEEECCGGGCCCCCSEEEECCTTCEEEEC
T ss_pred EcceEEEEccCcEeccCCcEEEEECCCcEEEEC
Confidence 987 44433322233346799999877777776
|
| >d1nnxa_ b.40.10.1 (A:) Hypothetical protein YgiW {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Hypothetical protein YgiW family: Hypothetical protein YgiW domain: Hypothetical protein YgiW species: Escherichia coli [TaxId: 562]
Probab=94.73 E-value=0.056 Score=42.90 Aligned_cols=77 Identities=18% Similarity=0.220 Sum_probs=57.6
Q ss_pred cccCCCCCCEEEEEEEEeeeecCCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHH-hcCCCCcEEEEEEEEecCCcc
Q 013865 97 ALNGSLKDQEVLIRGRVHTTRPVGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFV-RSLSNESIVDVIGVVSVPDVE 175 (435)
Q Consensus 97 ~l~~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~-~~l~~esiV~V~G~v~~~~~~ 175 (435)
++.....+..|+|.|.|.+.-..- + |.++|+++.|+|-++... |. ..+.+++-|.|.|.|-+..
T Consensus 29 ~a~~~~Ddt~V~L~G~Iv~~l~~d-~---Y~F~D~TG~I~VeId~~~---------w~g~~v~p~~kV~i~GevDk~~-- 93 (106)
T d1nnxa_ 29 SAKSLRDDTWVTLRGNIVERISDD-L---YVFKDASGTINVDIDHKR---------WNGVTVTPKDTVEIQGEVDKDW-- 93 (106)
T ss_dssp HHTTSCSSEEEEEEEEEEEEEETT-E---EEEEETTEEEEEECCGGG---------STTCCCCTTSCEEEEEEEEEET--
T ss_pred HHhhCcCCCeEEEEEEEEEEeCCc-e---EEEECCCCcEEEEEChhh---------cCCcccCCCCEEEEEEEEcCCC--
Confidence 334445688899999998765443 3 678999999999987431 33 2689999999999997422
Q ss_pred cCCCceeEEEEEeEEEEe
Q 013865 176 IKGATQQVEVQIKKLYCV 193 (435)
Q Consensus 176 ~~~~t~~lEi~v~~i~vl 193 (435)
...||-|..|++|
T Consensus 94 -----~~~eIdV~~I~~l 106 (106)
T d1nnxa_ 94 -----NSVEIDVKQIRKV 106 (106)
T ss_dssp -----TEEEEEEEEEEEC
T ss_pred -----CceEEEEEEEEEC
Confidence 3478889988875
|
| >d2pi2a1 b.40.4.3 (A:44-171) Replication protein A 32 KDa subunit (RPA32) fragment {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 32 KDa subunit (RPA32) fragment species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.63 E-value=0.12 Score=41.87 Aligned_cols=78 Identities=13% Similarity=0.138 Sum_probs=55.2
Q ss_pred CEEEEEEEEeeeecCCCceEEEEEEeCCe-EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCCCceeE
Q 013865 105 QEVLIRGRVHTTRPVGNKLAFVVVRERVS-TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQV 183 (435)
Q Consensus 105 ~~V~v~GrV~~~R~~G~kl~Fl~Lrd~~~-~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~~t~~l 183 (435)
..|+|-|+|.++...+.++ -+.|-|++| .|.|..-.+.+. +......+..|+.|.|.|.++.-. +..
T Consensus 29 ~~V~iVG~V~~i~~~~t~~-~y~idDgTG~~i~v~~w~~~~~----~~~~~~~i~~g~yVrV~G~lk~f~-------~~~ 96 (128)
T d2pi2a1 29 SQVTIVGIIRHAEKAPTNI-VYKIDDMTAAPMDVRQWVDTDD----TSSENTVVPPETYVKVAGHLRSFQ-------NKK 96 (128)
T ss_dssp SEEEEEEEEEEEEECSSEE-EEEEECSSSSCEEEEEECC-----------CCCCCTTCEEEEEEEEEEET-------TEE
T ss_pred EEEEEEEEEEEEEecCCEE-EEEEECCCCCcEEEEEECCCCC----CccccccccCCCEEEEEEEEEeeC-------CeE
Confidence 4799999999999988664 469999998 698887654221 112235799999999999997421 345
Q ss_pred EEEEeEEEEee
Q 013865 184 EVQIKKLYCVS 194 (435)
Q Consensus 184 Ei~v~~i~vls 194 (435)
.|.+..|..+.
T Consensus 97 ~i~~~~i~~v~ 107 (128)
T d2pi2a1 97 SLVAFKIMPLE 107 (128)
T ss_dssp EEEEEEEEECS
T ss_pred EEEEEEEEEeC
Confidence 67777776654
|
| >d1o7ia_ b.40.4.3 (A:) Archaeal ssDNA-binding protein {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Archaeal ssDNA-binding protein species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=93.48 E-value=0.21 Score=39.63 Aligned_cols=85 Identities=19% Similarity=0.220 Sum_probs=59.0
Q ss_pred EeccccCCCCCCEEEEEEEEeee---ecC----C-CceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEE
Q 013865 94 VVGALNGSLKDQEVLIRGRVHTT---RPV----G-NKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDV 165 (435)
Q Consensus 94 ~i~~l~~~~~g~~V~v~GrV~~~---R~~----G-~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V 165 (435)
+|++|.+. ...|+|.|+|.++ |.. | .+++.+.|.|++++|.+++=.. ++..|..|++|.+
T Consensus 4 kI~dL~pg--~~~v~i~~~V~~~~~~r~~~~~~g~~~v~~~~i~DeTG~i~~~~W~~----------~~~~l~~Gdvv~i 71 (115)
T d1o7ia_ 4 KVGNLKPN--MESVNVTVRVLEASEARQIQTKNGVRTISEAIVGDETGRVKLTLWGK----------HAGSIKEGQVVKI 71 (115)
T ss_dssp CGGGCCTT--CSSEEEEEEEEEECCCEEECCTTCCEEEEEEEEEETTEEEEEEEEGG----------GTTCCCTTCEEEE
T ss_pred cHHHCCCC--CCCEEEEEEEEECCCCceeecCCCCEEEEEEEEEcCCCeEEEEEecc----------ccccCCCCCEEEE
Confidence 46666542 2358999999886 331 2 2778899999999999988632 2356899999999
Q ss_pred EEEEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 166 IGVVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 166 ~G~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
.|.-.+. -.+.++|++.+-..+..+
T Consensus 72 ~na~v~~------~~g~~el~~~~~s~i~~~ 96 (115)
T d1o7ia_ 72 ENAWTTA------FKGQVQLNAGSKTKIAEA 96 (115)
T ss_dssp EEEEEEE------ETTEEEEEECTTCEEEEC
T ss_pred eeEEEEE------ECCeEEEEECCCeEEEEC
Confidence 8754431 125699999775555554
|
| >d2pi2e1 b.40.4.3 (E:3-117) Replication protein A 14 KDa (RPA14) subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Replication protein A 14 KDa (RPA14) subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.67 E-value=0.29 Score=39.05 Aligned_cols=70 Identities=16% Similarity=0.223 Sum_probs=50.4
Q ss_pred CCCCCCEEEEEEEEeeeecCCCceEEEEEEe-CCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEecCCcccCC
Q 013865 100 GSLKDQEVLIRGRVHTTRPVGNKLAFVVVRE-RVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 178 (435)
Q Consensus 100 ~~~~g~~V~v~GrV~~~R~~G~kl~Fl~Lrd-~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~~~~~~~~ 178 (435)
..+.|+.|++-|+|.+++..|+. +.+++ ++..|+|.+.... ....+.+|.|.|+|..
T Consensus 16 ~~~~Gk~V~ivGkV~~v~~~g~~---~~~~s~D~~~V~v~l~~~~------------~~~~~~~vEViG~V~~------- 73 (115)
T d2pi2e1 16 AQFIDKPVCFVGRLEKIHPTGKM---FILSDGEGKNGTIELMEPL------------DEEISGIVEVVGRVTA------- 73 (115)
T ss_dssp GGSTTCEEEEEEEEEEECTTSSE---EEEECTTSCEEEEECSSCC------------SSCCCSEEEEEEEECT-------
T ss_pred HhhCCCeEEEEEEEEEEcCCCCE---EEEEcCCCCEEEEEeCCCC------------CCccCCeEEEEEEECC-------
Confidence 46889999999999999999843 45665 4568888876421 3467889999999842
Q ss_pred CceeEEEEEeEEEEee
Q 013865 179 ATQQVEVQIKKLYCVS 194 (435)
Q Consensus 179 ~t~~lEi~v~~i~vls 194 (435)
...|.+..+.-++
T Consensus 74 ---~~sI~~~~~~~fg 86 (115)
T d2pi2e1 74 ---KATILCTSYVQFK 86 (115)
T ss_dssp ---TSCEEEEEEEECC
T ss_pred ---CCcEEEEEEEEcC
Confidence 2346666665554
|
| >d1gm5a2 b.40.4.9 (A:106-285) RecG "wedge" domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: RecG "wedge" domain domain: RecG "wedge" domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.61 E-value=0.072 Score=45.58 Aligned_cols=69 Identities=16% Similarity=0.158 Sum_probs=47.1
Q ss_pred cccCCCCCCEEEEEEEEeeeec---CCCceEEEEEEeCCeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEEEEec
Q 013865 97 ALNGSLKDQEVLIRGRVHTTRP---VGNKLAFVVVRERVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSV 171 (435)
Q Consensus 97 ~l~~~~~g~~V~v~GrV~~~R~---~G~kl~Fl~Lrd~~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G~v~~ 171 (435)
.+.+...|+.|+|.|+|.+.+. .+..+.-+.+.|+++.|.++...... . .... ....|..|.|.|.+..
T Consensus 53 ~i~~l~~g~~vti~g~V~~~~~~~~~~~~~~~~~v~D~~g~i~l~fFn~~~-~----~~~~-k~~~G~~v~v~Gkvk~ 124 (180)
T d1gm5a2 53 KLNDLLPGEKVTTQGKIVSVETKKFQNMNILTAVLSDGLVHVPLKWFNQDY-L----QTYL-KQLTGKEVFVTGTVKS 124 (180)
T ss_dssp CSSCCCSSCCCEEEECCCCCEEEECSSCEEEEEEECCSSCCEEEEECSCCT-T----HHHH-HTTCSSCEEEEEEECS
T ss_pred cccccCcceeeeeeeEEEeeccccccccceeEEEEEeccceEEEEEeCcHH-H----HHHH-hhhcCceEEEEEEEee
Confidence 3444566899999999986532 23355567788999999999875422 1 1111 2346999999999864
|
| >d1v1qa_ b.40.4.3 (A:) Primosomal replication protein N, PriB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: Primosomal replication protein N, PriB species: Escherichia coli [TaxId: 562]
Probab=87.29 E-value=2.1 Score=33.35 Aligned_cols=84 Identities=13% Similarity=0.191 Sum_probs=49.7
Q ss_pred CEEEEEEEEee---eec--CCCceEEEEEE------eCCe------EEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEEE
Q 013865 105 QEVLIRGRVHT---TRP--VGNKLAFVVVR------ERVS------TVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIG 167 (435)
Q Consensus 105 ~~V~v~GrV~~---~R~--~G~kl~Fl~Lr------d~~~------~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~G 167 (435)
..|.+.|+|.. +|- .|..++-+.|- +.+. .+.|++-... .....+.|..|+.|.|+|
T Consensus 7 N~v~L~G~l~~dpelr~T~~G~~v~~f~la~~~~~~e~~~~r~~~~~i~vv~~g~~------Ae~~~~~l~kG~~v~v~G 80 (111)
T d1v1qa_ 7 NRLVLSGTVCRAPLRKVSPSGIPHCQFVLEHRSVQEEAGFHRQAWCQMPVIVSGHE------NQAITHSITVGSRITVQG 80 (111)
T ss_dssp EEEEEEEEEEEEEEEEECTTCCEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESTG------GGGGGTTCCTTCEEEEEE
T ss_pred EEEEEEEEecCCcceEECCCCCEEEEEEEEeccEEecccceEEEEEEEEEEEeCHH------HHHHHHHhcCCCEEEEEE
Confidence 35777777774 454 34444434442 1121 3566655321 112346799999999999
Q ss_pred EEecCCcccCCCceeEEEEEeEEEEeecC
Q 013865 168 VVSVPDVEIKGATQQVEVQIKKLYCVSRA 196 (435)
Q Consensus 168 ~v~~~~~~~~~~t~~lEi~v~~i~vls~~ 196 (435)
.+....- ++..+.+.|+++.|.+|..-
T Consensus 81 ~L~~~~~--~~~~~r~v~~a~~ie~l~s~ 107 (111)
T d1v1qa_ 81 FISCHKA--KNGLSKMVLHAEQIELIDSV 107 (111)
T ss_dssp EEEEECT--TTTSCEEEEEEEEEEETTSC
T ss_pred EEEEecc--cCCCCEEEEEEEEEEEecCC
Confidence 9975321 12234688999999998643
|
| >d3ulla_ b.40.4.3 (A:) ssDNA-binding protein {Human (Homo sapiens), mitochondria [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: ssDNA-binding protein species: Human (Homo sapiens), mitochondria [TaxId: 9606]
Probab=86.23 E-value=3.6 Score=31.73 Aligned_cols=42 Identities=7% Similarity=0.099 Sum_probs=29.4
Q ss_pred HHH-hcCCCCcEEEEEEEEecCCcc-cCCCc-eeEEEEEeEEEEe
Q 013865 152 RFV-RSLSNESIVDVIGVVSVPDVE-IKGAT-QQVEVQIKKLYCV 193 (435)
Q Consensus 152 k~~-~~l~~esiV~V~G~v~~~~~~-~~~~t-~~lEi~v~~i~vl 193 (435)
..+ +.|++||.|.|+|.+....-. +.|.+ ..++|.+.+|.+|
T Consensus 71 ~~~~~~l~KG~~V~V~Grl~~~~~~dkdG~~r~~~~v~a~~i~~L 115 (115)
T d3ulla_ 71 DVAYQYVKKGSRIYLEGKIDYGEYMDKNNVRRQATTIIADNIIFL 115 (115)
T ss_dssp HHHHHHCCTTCEEEEEEEEECCCEESSSSEECCCEEEEEEEEECC
T ss_pred hhhhhhccCCCEEEEEEEEeeeeEECCCCCEEEEEEEEEEEEEeC
Confidence 444 459999999999999754311 23433 3499999998765
|
| >d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain species: Thermus thermophilus [TaxId: 274]
Probab=85.42 E-value=1 Score=38.90 Aligned_cols=107 Identities=16% Similarity=0.114 Sum_probs=59.3
Q ss_pred HHHHHHHhhcCCeEEeeCceeeccCC----CCCcceeEe-ccC-CCceeeccChHHHHhhhc----c-CCC--ceeEEEe
Q 013865 255 GNIFRQFLLSENFVEIHTPKLIAGSS----EGGSAVFRL-DYK-GQSACLAQSPQLHKQMSI----C-GDF--GRVFETG 321 (435)
Q Consensus 255 ~~~~r~fl~~~gF~EV~TP~l~~~~~----egga~~F~v-~~~-~~~~~L~~Spql~lq~~i----~-~g~--~rVfeIg 321 (435)
.+.+|++|...||.||-|-.+++... ........+ |-. ..--+||.|.=--+=..+ . +.. -|+||||
T Consensus 21 ~~~ir~~L~~~Gf~Ev~tysf~s~~~~~~~~~~~~~i~l~NPis~e~~~lR~sLlpgLL~~~~~N~~r~~~~~~~lFEiG 100 (207)
T d1jjcb5 21 EQRLREVLSGLGFQEVYTYSFMDPEDARRFRLDPPRLLLLNPLAPEKAALRTHLFPGLVRVLKENLDLDRPERALLFEVG 100 (207)
T ss_dssp HHHHHHHHHHHTCEECCCCSEECTTHHHHTTCCCCSCEESSCSSGGGSEECSCSHHHHHHHHHHHHHHSCCSEEEEEEEE
T ss_pred HHHHHHHHHHCCcchhcCCCcCCHHHHHhhcCCCCcEEEeCCcchhhhhhhhhcchHHHHHHHhCcccccccceeeEeee
Confidence 45689999999999999999985321 111112233 222 244578887533322222 1 222 3789999
Q ss_pred cceecCCC------CCCccccccccceeeeeccccHHHHHHHHHHHHHHH
Q 013865 322 PVFRAEDS------YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTI 365 (435)
Q Consensus 322 p~FR~E~s------~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i 365 (435)
++|+.... .+..+.++.|.-.-. . ++.++..+++.++..+
T Consensus 101 ~vf~~~~~~~~~~~~~g~~~~~~~~~~~~---~-df~~~Kg~v~~ll~~l 146 (207)
T d1jjcb5 101 RVFREREETHLAGLLFGEGVGLPWAKERL---S-GYFLLKGYLEALFARL 146 (207)
T ss_dssp EEESSSEEEEEEEEEEESCBSCTTSSCCB---C-HHHHHHHHHHHHHHHH
T ss_pred eeeeccccccchhhhhhcccccccccccc---h-hHHHHHHHHHHHHHhh
Confidence 99986542 111223333322111 1 2667777777776553
|
| >d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Asparagine synthetase species: Escherichia coli [TaxId: 562]
Probab=84.53 E-value=12 Score=34.17 Aligned_cols=116 Identities=14% Similarity=0.184 Sum_probs=83.4
Q ss_pred HHHHHHHHhh-----cCCeEEeeCceeeccCCC-----CCcc---eeEeccC-CCceeeccChHHHHhhhcc-CCC---c
Q 013865 254 VGNIFRQFLL-----SENFVEIHTPKLIAGSSE-----GGSA---VFRLDYK-GQSACLAQSPQLHKQMSIC-GDF---G 315 (435)
Q Consensus 254 i~~~~r~fl~-----~~gF~EV~TP~l~~~~~e-----gga~---~F~v~~~-~~~~~L~~Spql~lq~~i~-~g~---~ 315 (435)
.+..+.+||. ..+.+.|..|.+....++ .|.+ .|.+..+ |..+-.-+|---||.+++. -|| +
T Consensus 8 aI~~iK~~F~~~L~~~LnL~rVsAPLfv~~~sGlNDnLnG~ErpV~F~ik~~~~~~~EiVhSLAKWKR~aL~~y~f~~ge 87 (327)
T d12asa_ 8 QISFVKSHFSRQLEERLGLIEVQAPILSRVGDGTQDNLSGAEKAVQVKVKALPDAQFEVVHSLAKWKRQTLGQHDFSAGE 87 (327)
T ss_dssp HHHHHHHHHHHHHHHHHCEEECCCCSEEETTSSCSCCTTTTCCCCEECCSSSTTCCEEECSCCTTHHHHHHHHTTCCTTC
T ss_pred HHHHHHHHHHHHHHHHhCcEEecCCeEEcCCCCcccCCCCeeeeeEEecCCCCCCeeEEEeehHHHHHHHHHhcCCCCCc
Confidence 3444555554 359999999999854322 1333 3655544 6778888999999998874 244 5
Q ss_pred eeEEEecceec-CCCCCCccccccccceeeeeccccHHHHHHHHHHHHHHHHhhhh
Q 013865 316 RVFETGPVFRA-EDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDRLFVTIFDGLN 370 (435)
Q Consensus 316 rVfeIgp~FR~-E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~ 370 (435)
.+|+=..+.|. |+.-++.|.-=+-+-|||..... -+--++.+.+.+..|+..+.
T Consensus 88 GlytdMnAiR~DEd~ldn~HSiyVDQWDWEkvI~~-~dR~l~~Lk~tV~~Iy~~ik 142 (327)
T d12asa_ 88 GLYTHMKALRPDEDRLSPLHSVYVDQWDWERVMGD-GERQFSTLKSTVEAIWAGIK 142 (327)
T ss_dssp EEEEEEEEECTTCSCCCSSCCSEEEEEEEEEECCT-TCCSHHHHHHHHHHHHHHHH
T ss_pred eeccCCccccCCcccCCCceeEEEcccchhhhcCc-cccCHHHHHHHHHHHHHHHH
Confidence 79999999986 55458899999999999999864 35567777777777777765
|
| >d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: ssDNA-binding protein species: Deinococcus radiodurans [TaxId: 1299]
Probab=81.91 E-value=5.4 Score=34.65 Aligned_cols=85 Identities=16% Similarity=0.090 Sum_probs=50.5
Q ss_pred EEEEEEEEee---ee--cCCCceEEEEEE------eC-------CeEEEEEEeeCCCCCcHHHHHHHh-cCCCCcEEEEE
Q 013865 106 EVLIRGRVHT---TR--PVGNKLAFVVVR------ER-------VSTVQCLATVKPDSVSKEMVRFVR-SLSNESIVDVI 166 (435)
Q Consensus 106 ~V~v~GrV~~---~R--~~G~kl~Fl~Lr------d~-------~~~iQvv~~~~~~~~s~~~~k~~~-~l~~esiV~V~ 166 (435)
.|+|.|+|.+ +| ..|+.++-+.|- +. ..-+.|++-. +.....+. .|.+|+.|.|.
T Consensus 5 ~v~l~G~l~~dpe~r~t~~G~~~~~f~lA~~~~~~~~~g~~~~~t~~~~v~~~g------~~Ae~~~~~~l~KG~~V~V~ 78 (231)
T d1se8a_ 5 HVYLIGALARDPELRYTGNGMAVFEATVAGEDRVIGNDGRERNLPWYHRVSILG------KPAEWQAERNLKGGDAVVVE 78 (231)
T ss_dssp EEEEEEEESSCCEEEECTTSCEEEEEEEEEEEEC-------CEEEEEEEEEEES------HHHHHHHHTCCCTTCEEEEE
T ss_pred EEEEEEEECcCCEEEECCCCCEEEEEEEEECCcEECCCCCEEeeeeeeeEEEeC------chhhhhhhhccCCCCEEEEE
Confidence 5778888875 55 345445544551 11 1236666652 22222444 59999999999
Q ss_pred EEEecCCcc-cCCCc-eeEEEEEeEEEEeecC
Q 013865 167 GVVSVPDVE-IKGAT-QQVEVQIKKLYCVSRA 196 (435)
Q Consensus 167 G~v~~~~~~-~~~~t-~~lEi~v~~i~vls~~ 196 (435)
|.+....-. ..|.+ ..++|.+.+|.+|++.
T Consensus 79 G~l~~~~~~~~dG~~r~~~~i~a~~v~~l~~~ 110 (231)
T d1se8a_ 79 GTLEYRQWEAPEGGKRSAVNVKALRMEQLGTQ 110 (231)
T ss_dssp EEEEEEEEC-----CEEEEEEEEEEEEECSSC
T ss_pred EEEEeeeeECCCCCEEEEEEEEEEEEEEccCC
Confidence 998742211 22333 3499999999999874
|
| >d1se8a_ b.40.4.3 (A:) ssDNA-binding protein {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Single strand DNA-binding domain, SSB domain: ssDNA-binding protein species: Deinococcus radiodurans [TaxId: 1299]
Probab=81.24 E-value=5.8 Score=34.42 Aligned_cols=84 Identities=18% Similarity=0.294 Sum_probs=53.2
Q ss_pred CEEEEEEEEee---eec--CCCceEEEEEE------eC-------CeEEEEEEeeCCCCCcHHHHHHHhcCCCCcEEEEE
Q 013865 105 QEVLIRGRVHT---TRP--VGNKLAFVVVR------ER-------VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVI 166 (435)
Q Consensus 105 ~~V~v~GrV~~---~R~--~G~kl~Fl~Lr------d~-------~~~iQvv~~~~~~~~s~~~~k~~~~l~~esiV~V~ 166 (435)
..|.|.|+|.+ +|. .|+.++-+.|- +. ..-+.|++-. .+.+.++.|.+||.|.|.
T Consensus 128 N~v~l~G~l~~dpe~r~t~~G~~~~~f~va~~~~~~~~~g~~~~~t~~~~v~~~g-------~~Ae~~~~l~KG~~V~V~ 200 (231)
T d1se8a_ 128 NEVLVLGNVTRDPEIRYTPAGDAVLSLSIAVNENYQDRQGQRQEKVHYIDATLWR-------DLAENMKELRKGDPVMIM 200 (231)
T ss_dssp EEEEEEEEECSCCEEEECTTCCEEEEEEEEEEEEEECTTSCEEEEEEEEEEEEET-------HHHHHHTTCCTTCEEEEE
T ss_pred eeEEEEEEeCCCcEEEECCCCCEEEEEEEEECCCeECCCCceeeeeEEEEeEecC-------cHHHHhhhCCCCCEEEEE
Confidence 57999999987 444 45555555551 11 2347777652 223455679999999999
Q ss_pred EEEecCCcc-cCCCc-eeEEEEEeEEEEeec
Q 013865 167 GVVSVPDVE-IKGAT-QQVEVQIKKLYCVSR 195 (435)
Q Consensus 167 G~v~~~~~~-~~~~t-~~lEi~v~~i~vls~ 195 (435)
|.+....-. ..|.+ ..++|.+.+|.+|++
T Consensus 201 G~l~~~~~~~kdG~~r~~~~i~a~~v~~L~r 231 (231)
T d1se8a_ 201 GRLVNEGWTDKDGNKRNSTRVEATRVEALAR 231 (231)
T ss_dssp EEEEEEECC------CEEEEEEEEEEEECCC
T ss_pred EEeEeceEECCCCCEEEEEEEEEEEEEEccC
Confidence 998643211 22433 359999999999874
|
| >d1atia2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Class II aaRS and biotin synthetases superfamily: Class II aaRS and biotin synthetases family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain domain: Glycyl-tRNA synthetase (GlyRS) species: Thermus thermophilus [TaxId: 274]
Probab=80.24 E-value=0.4 Score=46.11 Aligned_cols=30 Identities=30% Similarity=0.503 Sum_probs=23.8
Q ss_pred eeEEEecceecCCCCCCc----cccccccceeeeec
Q 013865 316 RVFETGPVFRAEDSYTHR----HLCEFTGLDVEMEI 347 (435)
Q Consensus 316 rVfeIgp~FR~E~s~t~r----Hl~EFt~lE~e~a~ 347 (435)
.+.+||++||||= ++| -+-||||+|+|.=.
T Consensus 211 GiAQIGk~FRNEI--sPr~~l~R~REF~q~EiE~Fv 244 (394)
T d1atia2 211 GIAQIGKAFRNEI--TPRNFIFRVREFEQMEIEYFV 244 (394)
T ss_dssp EEEEEEEEEBCCS--SCCTGGGSCSEEEEEEEEEEE
T ss_pred eeeeecccccccc--CcccCCcccccceeeeeEEEE
Confidence 5899999999994 333 45799999998743
|