Citrus Sinensis ID: 014028

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430--
MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEILVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKMKGGLPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEMVADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQESSRASQSGGGMNLHRC
cccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccHHHHHHHHcccccccccccccccccccEEEcccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccc
cccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcHHHHccccccccHHHHHHHHHHHHHccHHHHHccccccccccEEccccccccccEEEEEEcccccccccEEEEEcccccHHHHHHHHHHHccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccccccccccccHHHccccccccccHcccHHHHcHccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccc
MHRLPEEFLEELKNGLRAILEcnggshqrEEFLTLQRFVQGRSDLTAKTLIRAHRVHLEILVAINSGIqaflhpnislsqtsLIEVFVYKRCrniacqtqlpaddctceicthrngfcnlcMCVIcnkfdfevntcrwigcdlcshwthtdcairdgqicmgpsaksgacpsemlFRCRACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRifrgsedprgrkLYWKCEELLEKmkgglpesmaCRGILLFFQElevdspkslengeagrliaphEACNRIAEVVQEAIRKMEMVADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLqessrasqsgggmnlhrc
MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEILVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSrifrgsedprgrklYWKCEELLEKMKGGLPESMACRGILLFFQELEVDSPKSLENGEAgrliapheacNRIAEVVQEAIRKMEMVADEKMRMFKKARLSLDACDRELEDKAREVtelqmertkkkqqieeLEKIVRLKQAEADMFQLKANEAKREAERLQRIalaktdkseeeYASSYLKLRLSEAEAEKQYLFEkiklqessrasqsgggmnlhrc
MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEILVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKMKGGLPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEMVADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTkkkqqieelekiVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQESSRASQSGGGMNLHRC
***********LKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEILVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKMKGGLPESMACRGILLFFQELEV***********GRLIAPHEACNRIAEVVQEAIRKMEMV************************************************************************************************************************************
********LEELKNGLRAILEC*G*SHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEILVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQIC*********CPSEMLFRCRACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLE*M****P*SMACRGILLFFQ*****************************************************************************************KIVRLKQAEADMFQL****************************SSYLKL******************************MNLHR*
MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEILVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKMKGGLPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEMVADEKMRMFKKARLSLDACDRELEDKAREVTEL***********EELEKIVRLKQAEADMFQLKANEAKREAERLQRIALAK**********SYLKLRLSEAEAEKQYLFEKIKLQ*****************
**RLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEILVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKMKGGLPESMACRGILLFFQELEV********************CNRIAEVVQEAIRKMEMVADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQES***************
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MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEILVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKMKGGLPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEMVADEKMRMFKKARLSxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQESSRASQSGGGMNLHRC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query432 2.2.26 [Sep-21-2011]
Q9LUB7574 Protein OBERON 2 OS=Arabi yes no 0.983 0.740 0.785 0.0
Q84N37513 OBERON-like protein (Frag N/A no 0.983 0.828 0.774 0.0
Q84N38549 OBERON-like protein OS=Ni N/A no 0.990 0.779 0.745 0.0
Q9S736566 Protein OBERON 1 OS=Arabi no no 0.962 0.734 0.769 0.0
Q84TI31162 Protein OBERON 4 OS=Arabi no no 0.900 0.334 0.378 5e-73
Q94B71733 Protein OBERON 3 OS=Arabi no no 0.879 0.518 0.350 3e-64
Q9FIE3 620 Protein VERNALIZATION INS no no 0.307 0.214 0.283 3e-07
>sp|Q9LUB7|OBE2_ARATH Protein OBERON 2 OS=Arabidopsis thaliana GN=OBE2 PE=1 SV=1 Back     alignment and function desciption
 Score =  703 bits (1815), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 336/428 (78%), Positives = 382/428 (89%), Gaps = 3/428 (0%)

Query: 1   MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEI 60
           MHRLP+EFL+ELKNGL++ILE N  +   +EF+ LQ+ VQ R+DL++ TL+RAHRV LEI
Sbjct: 108 MHRLPDEFLDELKNGLKSILEGNV-AQSVDEFMFLQKVVQSRTDLSSVTLVRAHRVQLEI 166

Query: 61  LVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNL 120
           LVAIN+GIQAFLHPNISLSQ SLIE+FVYKRCRNIACQ QLPADDC C+ICT+R GFCNL
Sbjct: 167 LVAINTGIQAFLHPNISLSQPSLIEIFVYKRCRNIACQNQLPADDCYCDICTNRKGFCNL 226

Query: 121 CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGAC-PSEMLFRCR 179
           CMC ICNKFDF VNTCRWIGCDLCSHWTHTDCAIRDGQI  G SAK+    P E++F+CR
Sbjct: 227 CMCTICNKFDFSVNTCRWIGCDLCSHWTHTDCAIRDGQITTGSSAKNNTSGPGEIVFKCR 286

Query: 180 ACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEK 239
           ACNRTSELLGWVKDVFQHCAP WDRE+LM+ELDFVSRIFRGSED RGRKL+WKCEEL++K
Sbjct: 287 ACNRTSELLGWVKDVFQHCAPNWDRESLMKELDFVSRIFRGSEDQRGRKLFWKCEELIDK 346

Query: 240 MKGGLPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEM 299
           +KGGL E+ A + IL+FFQE+E DS KS ENGE GRL+AP +ACNRIAEVVQE +RKME+
Sbjct: 347 IKGGLAEATAAKLILMFFQEIESDSAKSFENGEGGRLMAPQDACNRIAEVVQETLRKMEI 406

Query: 300 VADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADM 359
           VA+EKMRMFKKAR++L+ CDRELEDKA+EV+EL+ ER KKK QI+ELE+IVRLKQAEADM
Sbjct: 407 VAEEKMRMFKKARMALETCDRELEDKAKEVSELKAERQKKKLQIDELERIVRLKQAEADM 466

Query: 360 FQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQESSR 419
           FQLKANEAKREA+RLQRI LAK DKSEEEYAS+YLK RLSEAEAEKQYLFEKIKLQE+SR
Sbjct: 467 FQLKANEAKREADRLQRIVLAKMDKSEEEYASNYLKQRLSEAEAEKQYLFEKIKLQENSR 526

Query: 420 -ASQSGGG 426
            ASQS GG
Sbjct: 527 VASQSSGG 534
Together with OBE1, required for the maintenance and/or establishment of both the shoot and root meristems, probably by controlling the expression of the meristem genes such as WUS, PLT1 and PLT2 and of genes required for auxin responses. Promotes cell meristematic activity via the WUSCHEL-CLAVATA pathway. Involved in the development of the basal pole and in auxin-mediated root and vascular development in the embryo. Confers sensitivity to turnip mosaic virus (TuMV) probably by promoting viral movement and multiplication via interaction with TuMV VPg.
Arabidopsis thaliana (taxid: 3702)
>sp|Q84N37|PVIP_PEA OBERON-like protein (Fragment) OS=Pisum sativum GN=PVIP PE=1 SV=1 Back     alignment and function description
>sp|Q84N38|PVIP_NICBE OBERON-like protein OS=Nicotiana benthamiana GN=PVIP PE=1 SV=1 Back     alignment and function description
>sp|Q9S736|OBE1_ARATH Protein OBERON 1 OS=Arabidopsis thaliana GN=OBE1 PE=1 SV=1 Back     alignment and function description
>sp|Q84TI3|OBE4_ARATH Protein OBERON 4 OS=Arabidopsis thaliana GN=OBE4 PE=1 SV=2 Back     alignment and function description
>sp|Q94B71|OBE3_ARATH Protein OBERON 3 OS=Arabidopsis thaliana GN=OBE3 PE=1 SV=1 Back     alignment and function description
>sp|Q9FIE3|VIN3_ARATH Protein VERNALIZATION INSENSITIVE 3 OS=Arabidopsis thaliana GN=VIN3 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
255581794 587 protein binding protein, putative [Ricin 0.986 0.725 0.901 0.0
224131802 570 predicted protein [Populus trichocarpa] 0.990 0.750 0.873 0.0
224064852 570 predicted protein [Populus trichocarpa] 0.990 0.750 0.869 0.0
225447570 587 PREDICTED: protein OBERON 2 [Vitis vinif 0.958 0.705 0.869 0.0
356501705 567 PREDICTED: OBERON-like protein-like [Gly 0.990 0.754 0.818 0.0
229368649504 potyviral VPg interacting protein 1 [Pha 0.986 0.845 0.817 0.0
356552124 567 PREDICTED: OBERON-like protein-like [Gly 0.986 0.751 0.817 0.0
356547843 567 PREDICTED: OBERON-like protein-like [Gly 0.986 0.751 0.819 0.0
167178795 567 Potyvirus VPg interacting protein [Arach 0.962 0.733 0.817 0.0
297795457 572 hypothetical protein ARALYDRAFT_494868 [ 0.983 0.743 0.789 0.0
>gi|255581794|ref|XP_002531698.1| protein binding protein, putative [Ricinus communis] gi|223528674|gb|EEF30689.1| protein binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  801 bits (2069), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 384/426 (90%), Positives = 406/426 (95%)

Query: 1   MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEI 60
           MHRLP+EFLEELKN LRAILE NGGS QREEF  LQ+FVQ RSDLTAKTLIRAHRV +EI
Sbjct: 123 MHRLPDEFLEELKNELRAILEGNGGSQQREEFSILQKFVQTRSDLTAKTLIRAHRVQVEI 182

Query: 61  LVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNL 120
           LVAIN+GIQAFLHP+ISLSQTSLIEVFV+KRCRNIACQ QLPADDC C ICT+RNGFCNL
Sbjct: 183 LVAINTGIQAFLHPSISLSQTSLIEVFVFKRCRNIACQNQLPADDCPCGICTNRNGFCNL 242

Query: 121 CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRA 180
           CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPS K+GA P+EMLFRCRA
Sbjct: 243 CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSVKNGAGPTEMLFRCRA 302

Query: 181 CNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKM 240
           CNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKL+WKCEEL++KM
Sbjct: 303 CNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLFWKCEELIDKM 362

Query: 241 KGGLPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEMV 300
           KGGL ES ACR IL+FFQELEVDSPKSLENGE GRLIAP EACNRIAEVVQEAIRKMEMV
Sbjct: 363 KGGLAESTACRVILMFFQELEVDSPKSLENGEGGRLIAPQEACNRIAEVVQEAIRKMEMV 422

Query: 301 ADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADMF 360
           ADEKMRMFKKAR++LDACDRELE+KA+EVTEL+++R KKK Q+EELE+IVRLKQAEADMF
Sbjct: 423 ADEKMRMFKKARIALDACDRELEEKAKEVTELKLDRQKKKLQVEELERIVRLKQAEADMF 482

Query: 361 QLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQESSRA 420
           QLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQESSRA
Sbjct: 483 QLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQESSRA 542

Query: 421 SQSGGG 426
           SQS GG
Sbjct: 543 SQSSGG 548

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224131802|ref|XP_002321182.1| predicted protein [Populus trichocarpa] gi|222861955|gb|EEE99497.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224064852|ref|XP_002301583.1| predicted protein [Populus trichocarpa] gi|222843309|gb|EEE80856.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225447570|ref|XP_002270767.1| PREDICTED: protein OBERON 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356501705|ref|XP_003519664.1| PREDICTED: OBERON-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|229368649|gb|ACQ59180.1| potyviral VPg interacting protein 1 [Phaseolus vulgaris] gi|229368655|gb|ACQ59183.1| potyviral VPg interacting protein 1 [Phaseolus vulgaris] gi|229368663|gb|ACQ59187.1| potyviral VPg interacting protein 1 [Phaseolus vulgaris] Back     alignment and taxonomy information
>gi|356552124|ref|XP_003544420.1| PREDICTED: OBERON-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|356547843|ref|XP_003542314.1| PREDICTED: OBERON-like protein-like [Glycine max] Back     alignment and taxonomy information
>gi|167178795|gb|ABZ11028.1| Potyvirus VPg interacting protein [Arachis hypogaea] Back     alignment and taxonomy information
>gi|297795457|ref|XP_002865613.1| hypothetical protein ARALYDRAFT_494868 [Arabidopsis lyrata subsp. lyrata] gi|297311448|gb|EFH41872.1| hypothetical protein ARALYDRAFT_494868 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query432
TAIR|locus:2164713574 OBE2 "OBERON2" [Arabidopsis th 0.983 0.740 0.764 1.5e-177
UNIPROTKB|Q84N37513 PVIP "OBERON-like protein" [Pi 0.983 0.828 0.753 2.3e-174
TAIR|locus:2077362566 OBE1 "OBERON1" [Arabidopsis th 0.962 0.734 0.745 4.4e-171
UNIPROTKB|Q84N38549 PVIP "OBERON-like protein" [Ni 0.990 0.779 0.724 4.7e-167
TAIR|locus:20874031162 TTA2 "TITANIA 2" [Arabidopsis 0.946 0.351 0.361 6.9e-69
TAIR|locus:2006837733 TTA1 "TITANIA 1" [Arabidopsis 0.884 0.521 0.321 4.2e-56
TAIR|locus:2173004 620 VIN3 "VERNALIZATION INSENSITIV 0.303 0.211 0.287 2.6e-08
TAIR|locus:2094859 602 VRN5 "AT3G24440" [Arabidopsis 0.340 0.244 0.264 6.7e-07
TAIR|locus:2201056471 AT1G05410 "AT1G05410" [Arabido 0.625 0.573 0.223 3.5e-06
TAIR|locus:2128946 714 VEL1 "vernalization5/VIN3-like 0.337 0.204 0.271 0.00028
TAIR|locus:2164713 OBE2 "OBERON2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1724 (611.9 bits), Expect = 1.5e-177, P = 1.5e-177
 Identities = 327/428 (76%), Positives = 371/428 (86%)

Query:     1 MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEI 60
             MHRLP+EFL+ELKNGL++ILE N  +   +EF+ LQ+ VQ R+DL++ TL+RAHRV LEI
Sbjct:   108 MHRLPDEFLDELKNGLKSILEGNV-AQSVDEFMFLQKVVQSRTDLSSVTLVRAHRVQLEI 166

Query:    61 LVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNL 120
             LVAIN+GIQAFLHPNISLSQ SLIE+FVYKRCRNIACQ QLPADDC C+ICT+R GFCNL
Sbjct:   167 LVAINTGIQAFLHPNISLSQPSLIEIFVYKRCRNIACQNQLPADDCYCDICTNRKGFCNL 226

Query:   121 CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGAC-PSEMLFRCR 179
             CMC ICNKFDF VNTCRWIGCDLCSHWTHTDCAIRDGQI  G SAK+    P E++F+CR
Sbjct:   227 CMCTICNKFDFSVNTCRWIGCDLCSHWTHTDCAIRDGQITTGSSAKNNTSGPGEIVFKCR 286

Query:   180 ACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEK 239
             ACNRTSELLGWVKDVFQHCAP WDRE+LM+ELDFVSRIFRGSED RGRKL+WKCEEL++K
Sbjct:   287 ACNRTSELLGWVKDVFQHCAPNWDRESLMKELDFVSRIFRGSEDQRGRKLFWKCEELIDK 346

Query:   240 MKGGLPESMACRGILLFFQELEVDSPKSLENGEAGRLIAPHEACNRIAEVVQEAIRKMEM 299
             +KGGL E+ A + IL+FFQE+E DS KS ENGE GRL+AP +ACNRIAEVVQE +RKME+
Sbjct:   347 IKGGLAEATAAKLILMFFQEIESDSAKSFENGEGGRLMAPQDACNRIAEVVQETLRKMEI 406

Query:   300 VADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTXXXXXXXXXXXXVRLKQAEADM 359
             VA+EKMRMFKKAR++L+ CDRELEDKA+EV+EL+ ER             VRLKQAEADM
Sbjct:   407 VAEEKMRMFKKARMALETCDRELEDKAKEVSELKAERQKKKLQIDELERIVRLKQAEADM 466

Query:   360 FQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQESSR 419
             FQLKANEAKREA+RLQRI LAK DKSEEEYAS+YLK RLSEAEAEKQYLFEKIKLQE+SR
Sbjct:   467 FQLKANEAKREADRLQRIVLAKMDKSEEEYASNYLKQRLSEAEAEKQYLFEKIKLQENSR 526

Query:   420 -ASQSGGG 426
              ASQS GG
Sbjct:   527 VASQSSGG 534
GO:0005634 "nucleus" evidence=ISM;IDA
GO:0008270 "zinc ion binding" evidence=IEA
GO:0046740 "spread of virus in host, cell to cell" evidence=IMP
GO:0009793 "embryo development ending in seed dormancy" evidence=IGI
GO:0010071 "root meristem specification" evidence=IGI
GO:0010078 "maintenance of root meristem identity" evidence=IGI
GO:0010492 "maintenance of shoot apical meristem identity" evidence=IGI
GO:0042803 "protein homodimerization activity" evidence=TAS
GO:0046982 "protein heterodimerization activity" evidence=TAS
GO:0005515 "protein binding" evidence=IPI
GO:0010468 "regulation of gene expression" evidence=IGI
GO:0080022 "primary root development" evidence=IGI
UNIPROTKB|Q84N37 PVIP "OBERON-like protein" [Pisum sativum (taxid:3888)] Back     alignment and assigned GO terms
TAIR|locus:2077362 OBE1 "OBERON1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q84N38 PVIP "OBERON-like protein" [Nicotiana benthamiana (taxid:4100)] Back     alignment and assigned GO terms
TAIR|locus:2087403 TTA2 "TITANIA 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2006837 TTA1 "TITANIA 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2173004 VIN3 "VERNALIZATION INSENSITIVE 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2094859 VRN5 "AT3G24440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2201056 AT1G05410 "AT1G05410" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2128946 VEL1 "vernalization5/VIN3-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9LUB7OBE2_ARATHNo assigned EC number0.78500.98370.7404yesno
Q84N37PVIP_PEANo assigned EC number0.77460.98370.8284N/Ano
Q84N38PVIP_NICBENo assigned EC number0.74530.99070.7795N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.XIV.3724.1
hypothetical protein (516 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
pfam07227446 pfam07227, DUF1423, Protein of unknown function (D 0.0
TIGR03319 514 TIGR03319, RNase_Y, ribonuclease Y 2e-04
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 3e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 0.002
>gnl|CDD|219342 pfam07227, DUF1423, Protein of unknown function (DUF1423) Back     alignment and domain information 
 Score =  681 bits (1759), Expect = 0.0
 Identities = 307/422 (72%), Positives = 359/422 (85%), Gaps = 8/422 (1%)

Query: 1   MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEI 60
           MH +P+E+LEELK  LR ILE   G+ +R+E + LQ+ VQ RSDLT++TLIRAHRV LEI
Sbjct: 12  MHEMPDEYLEELKEALRGILE---GAQKRDELVFLQKAVQSRSDLTSETLIRAHRVQLEI 68

Query: 61  LVAINSGIQAFLHPNISLSQTSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNL 120
           LVAI +GIQAFLHP+IS+SQ+SL+E+F+YKRCRNIACQ+ LP DDC C+IC+++ GFC+L
Sbjct: 69  LVAIKTGIQAFLHPSISISQSSLVEIFLYKRCRNIACQSLLPVDDCDCKICSNKKGFCSL 128

Query: 121 CMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRA 180
           CMCV+C+KFDF VNTCRW+GCD+CSHW HTDCAIRDG I  GPS K G+  +EM F CRA
Sbjct: 129 CMCVVCSKFDFAVNTCRWVGCDVCSHWCHTDCAIRDGLIRPGPSLKGGSGTTEMQFHCRA 188

Query: 181 CNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKM 240
           CN TSE+ G+VKDVFQHCAP WDRE L++ELDFV +IFRGSED RG+KL+WKCEEL+EK+
Sbjct: 189 CNHTSEMFGFVKDVFQHCAPNWDRETLIKELDFVRKIFRGSEDARGKKLFWKCEELIEKL 248

Query: 241 KGGLPES-MACRGILLFFQELEVDSPKSLENG-EAGRLIAPHEAC-NRIAEVVQEAIRKM 297
           K  L     AC  IL FFQEL  DS KSLEN  E GRLIAP EAC NRIAEVVQEA+RKM
Sbjct: 249 KSKLASPPEACNLILQFFQEL--DSSKSLENTSEPGRLIAPQEACRNRIAEVVQEAVRKM 306

Query: 298 EMVADEKMRMFKKARLSLDACDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEA 357
           E VA+EKMRM KKAR +LDACDRELE+KAREV+EL+MER +KK QI+ELE IVRLKQAEA
Sbjct: 307 ESVAEEKMRMLKKARSALDACDRELEEKAREVSELKMERQRKKPQIDELESIVRLKQAEA 366

Query: 358 DMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKIKLQES 417
           DMFQLKA+EA+REAERLQRIALAKT+KSEEEYAS YLKLRLSEAE E+QYLFE++KLQE 
Sbjct: 367 DMFQLKADEARREAERLQRIALAKTEKSEEEYASKYLKLRLSEAEEERQYLFEELKLQEE 426

Query: 418 SR 419
           S 
Sbjct: 427 SH 428

This family represents a conserved region approximately 500 residues long within a number of Arabidopsis thaliana proteins of unknown function. Length = 446
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 432
PF07227446 DUF1423: Protein of unknown function (DUF1423); In 100.0
smart0024947 PHD PHD zinc finger. The plant homeodomain (PHD) f 96.81
PF0062851 PHD: PHD-finger; InterPro: IPR019787 Zinc finger ( 92.67
TIGR00570309 cdk7 CDK-activating kinase assembly factor MAT1. A 83.28
>PF07227 DUF1423: Protein of unknown function (DUF1423); InterPro: IPR004082 A total of 715 potential protein-coding genes have been identified in the nucleotide sequence of Arabidopsis thaliana chromosome 5, with an average gene density of 1 gene per 4001 bp [] Back     alignment and domain information 
Probab=100.00  E-value=5.3e-161  Score=1219.00  Aligned_cols=417  Identities=65%  Similarity=1.063  Sum_probs=405.7

Q ss_pred             CCCCcHHHHHHHHHHHHHHhhhcCCCcchhHHHHhHHhhccCCCcchhHHHhhhhhhhhhhhhhccCccccccCCCCCCc
Q 014028            1 MHRLPEEFLEELKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVHLEILVAINSGIQAFLHPNISLSQ   80 (432)
Q Consensus         1 m~~~p~e~le~lK~~lr~il~~~~~~~~~de~l~Lq~~lq~R~Dlt~~~l~~ahr~qLEilVaiktgi~aFl~p~~~~s~   80 (432)
                      ||+||+|+||+||++||+||+   +++|||||++||++||+|+|||+++|++|||+||||||||||||++||||++++|+
T Consensus        12 ~~~~~~e~l~~lk~~lr~i~~---~~~~r~e~~~lQ~~l~~RsDLt~~~L~~~hr~QLEilVAiktG~~~fl~~~~~~~~   88 (446)
T PF07227_consen   12 MQEMPEESLEELKEYLREILE---GPEKREEFVALQKLLQRRSDLTSETLSKAHRVQLEILVAIKTGIQAFLHPSISISQ   88 (446)
T ss_pred             HHHchHHHHHHHHHHHHHHHh---CcchHHHHHHHHHHHhccccCCHHHHhHhHHHHHHHHHHHhhCcHHHhCCCCCcCh
Confidence            789999999999999999995   59999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHhhhhcccccccccccCCCCCCccccccCCCCcccCccccccccccCCCCceeEEecCCCcchhhhHhhhhcCCcc
Q 014028           81 TSLIEVFVYKRCRNIACQTQLPADDCTCEICTHRNGFCNLCMCVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQIC  160 (432)
Q Consensus        81 s~LveiFl~~~CrN~aCrs~Lp~~dc~C~IC~~~~gFC~~C~C~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g  160 (432)
                      +.|||||+|+||||++|+|+||++||+|+|||+++|||++||||||+|||+|+|||+||+||+||||||+|||||+++||
T Consensus        89 ~~LveiFl~~rCrN~aC~s~LP~ddc~C~iC~~~~gFC~~C~C~iC~kfD~~~n~~~Wi~Cd~CgH~cH~dCALr~~~i~  168 (446)
T PF07227_consen   89 SELVEIFLYKRCRNLACRSQLPVDDCDCKICCSEPGFCRRCMCCICSKFDDNKNTCSWIGCDVCGHWCHLDCALRHELIG  168 (446)
T ss_pred             HHHHHHHHHHhcCCHHhhccCCccccCcchhcCCCCccccCCccccCCcccCCCCeeEEeccCCCceehhhhhccccccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCeeEEcccCCCCchhhhHHHHHHhhhcccccHHHHHHHHhhhhhhcccCCCchhhHHHHHHHHHHHHH
Q 014028          161 MGPSAKSGACPSEMLFRCRACNRTSELLGWVKDVFQHCAPAWDREALMRELDFVSRIFRGSEDPRGRKLYWKCEELLEKM  240 (432)
Q Consensus       161 ~g~~~~g~~~~lD~~f~C~~C~~~seLlg~vK~vf~~ca~~w~~d~L~keL~lv~rIfrGSed~rgK~L~~~~e~al~KL  240 (432)
                      +|++.+|+.|++||+|||++|||+||||||||+||++|+++|++|+|++||+||+|||+||+|++||+|||++++|+.||
T Consensus       169 ~G~s~~g~~g~~d~~f~C~~C~~~seLlG~vk~vf~~ca~~~~~d~L~~eL~l~~rIf~GSed~rgk~L~~~~e~al~KL  248 (446)
T PF07227_consen  169 TGPSVKGSIGTLDMQFHCRACGKTSELLGFVKKVFQTCAKAWRVDVLCKELDLVRRIFRGSEDYRGKELHEKVEEALAKL  248 (446)
T ss_pred             CCccCCCCCccCceEEEccCCCChhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhCccchhHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCC-ChhHHHHHHHHHhhhhccCCCcccccC-CCCcccChhhhh-hhhhHhHHHHHHHhhhhhhHHhhhhhhhhhhhhh
Q 014028          241 KGGL-PESMACRGILLFFQELEVDSPKSLENG-EAGRLIAPHEAC-NRIAEVVQEAIRKMEMVADEKMRMFKKARLSLDA  317 (432)
Q Consensus       241 k~g~-~~~~~~~~il~ff~~~~~~~~k~~~~~-~~~~l~~~~~~~-~~ia~~~~ea~~~~e~v~~ek~~~~k~a~~~l~~  317 (432)
                      ++|+ +++++||+|++|||++  |++++.++. +++++|+|++++ |+||+++++|+++|+.|+.||++++++|++++++
T Consensus       249 ~~~~~~~~~a~~~il~ff~~~--d~~~~~~~~~~~~k~i~~q~a~~~~ia~~~~ea~~~~e~v~~e~~~~~kka~~~~~~  326 (446)
T PF07227_consen  249 ENGVIDSSEACKAILQFFQEL--DSSKSFENSGESGKEIPPQEACPNRIAEVVQEAVRKMESVAEEKMRMLKKARLALET  326 (446)
T ss_pred             hCCCCCHHHHHHHHHHHHhcc--cccccccccccccccccccccccCCCCCcchhhcccchhhhhcchhhhhhhhhhhhh
Confidence            9994 6779999999999997  445445454 678899999999 9999999999999999999999999999999999


Q ss_pred             hhhhhhhhHhHHHHHHHHHhhccchhHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHHHHhhhhchHHHHHhhhhhhh
Q 014028          318 CDRELEDKAREVTELQMERTKKKQQIEELEKIVRLKQAEADMFQLKANEAKREAERLQRIALAKTDKSEEEYASSYLKLR  397 (432)
Q Consensus       318 ~~~~l~~k~~~~~el~~~~~~kk~~~eeLEsiVrlKqAEA~MfQ~kAdeArrEAE~l~ri~~aK~ek~EeeYas~~~kl~  397 (432)
                      ++++|++|+++++|+++++++||++|||||||||||||||+|||.||||||||||||||||+||++|+|||||++|+|||
T Consensus       327 ~~~~l~~k~k~~~e~~~~~~~kk~~~eeLESIVRiKqAEA~MFQ~kAdEARrEAE~LqrI~~aK~~k~EEEYas~~~kl~  406 (446)
T PF07227_consen  327 CDRELEDKAKEVAELQFERQRKKPQIEELESIVRIKQAEAKMFQLKADEARREAEGLQRIALAKSEKIEEEYASRYLKLR  406 (446)
T ss_pred             hhhHHHhhhhhhhhhhHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcHHHHHHHHHHHHHHHHhhcccCC
Q 014028          398 LSEAEAEKQYLFEKIKLQESSRASQ  422 (432)
Q Consensus       398 l~Eaee~r~~~~eelk~~e~s~~~~  422 (432)
                      |+||||+||++|||||+|||||...
T Consensus       407 l~eaee~r~~~~eelk~~e~s~~~~  431 (446)
T PF07227_consen  407 LNEAEEERKKKFEELKVLENSHRDY  431 (446)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcccc
Confidence            9999999999999999999999654

Amongst the gene products is a well-conserved family of 130.7kDa proteins that share no sequence similarity with any other known proteins, other than in plants. The sequences are characterised by an N-terminal domain of variable length, a central cysteine-rich region and a relatively acidic C-terminal domain. The sequences may possess a PHD finger.
>smart00249 PHD PHD zinc finger Back     alignment and domain information
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule Back     alignment and domain information
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query432
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 3e-05
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-04
1i84_S 1184 Smooth muscle myosin heavy chain; muscle protein, 5e-04
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 9e-05
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 2e-04
2k16_A75 Transcription initiation factor TFIID subunit 3; p 4e-04
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 51.0 bits (121), Expect = 6e-07
 Identities = 57/454 (12%), Positives = 127/454 (27%), Gaps = 131/454 (28%)

Query: 6   EEFLEE--------LKNGLRAILECNGGSHQREEFLTLQRFVQGRSDLTAKTLIRAHRVH 57
           ++F+EE        L + ++   E    S     ++  +  +   + + AK  +   + +
Sbjct: 80  QKFVEEVLRINYKFLMSPIKT--EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPY 137

Query: 58  LEI---LVAINSGIQAFLHPNISLSQTSL-IEVFVYKRCRNIACQTQLPADDCTCEICTH 113
           L++   L+ +       +   +   +T + ++V     C +   Q               
Sbjct: 138 LKLRQALLELRPAKNVLIDGVLGSGKTWVALDV-----CLSYKVQC-------------- 178

Query: 114 RNGFCNLCMCVICNKFDFEVNTCRWIG---CD-----------LCSHWTHTDCAIRDGQI 159
                         K DF++    W+    C+           L         +  D   
Sbjct: 179 --------------KMDFKIF---WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221

Query: 160 CMGPSAKSGACPSEMLFRCRACNRTSELLGWV-KDVFQHCAPAWDREALMRELDFVSRIF 218
            +     S       L + +       LL  V  +V        + +A     +   +I 
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENC--LL--VLLNV-------QNAKAW-NAFNLSCKIL 269

Query: 219 ---RGSEDPRGRKLYWKCEELLEKMKGGL--PESMACRGILLFFQELEVDSPKSLENGEA 273
              R  +              L+     L   E  +     L  + L+   P+ L     
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS-----LLLKYLDC-RPQDL----- 318

Query: 274 GRLIAPHEACNR-------IAEVVQEAIRKME---MVADEKMRMFKKARLSLDACDRELE 323
                P E           IAE +++ +   +    V  +K+    ++  SL+     LE
Sbjct: 319 -----PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES--SLNV----LE 367

Query: 324 DKAREVTELQMERTKKKQQIEEL---EKIVRLKQAEADMF--QLKANEAKREAERLQRIA 378
                  E        ++  + L        +      +    +  ++      +L + +
Sbjct: 368 P-----AEY-------RKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415

Query: 379 LAKTDKSEEEYASSYLKLRLSEAEAEKQYLFEKI 412
           L +    E   +   + L L      +  L   I
Sbjct: 416 LVEKQPKESTISIPSIYLELKVKLENEYALHRSI 449
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Length = 75 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
3lqh_A183 Histone-lysine N-methyltransferase MLL; PHD finger 97.09
2k16_A75 Transcription initiation factor TFIID subunit 3; p 96.11
2kgg_A52 Histone demethylase jarid1A; PHD finger, histone m 95.56
1we9_A64 PHD finger family protein; structural genomics, PH 95.31
1wew_A78 DNA-binding family protein; structural genomics, P 94.96
3asl_A70 E3 ubiquitin-protein ligase UHRF1; histone reader 94.38
3shb_A77 E3 ubiquitin-protein ligase UHRF1; unmodified hist 93.64
1wep_A79 PHF8; structural genomics, PHD domain, riken struc 93.37
1wee_A72 PHD finger family protein; structural genomics, PH 93.16
2ri7_A174 Nucleosome-remodeling factor subunit BPTF; zinc fi 93.05
2xb1_A105 Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; 92.72
2vpb_A65 Hpygo1, pygopus homolog 1; gene regulation, WNT si 92.67
3kqi_A75 GRC5, PHD finger protein 2; metal-binding, zinc-fi 91.99
1wen_A71 Inhibitor of growth family, member 4; ING1-like pr 91.8
1wem_A76 Death associated transcription factor 1; structura 91.02
2jmi_A90 Protein YNG1, ING1 homolog 1; PHD, histone, recogn 90.81
2lv9_A98 Histone-lysine N-methyltransferase MLL5; zinc fing 90.5
2rsd_A68 E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant 90.28
1weu_A91 Inhibitor of growth family, member 4; structural g 90.04
2e6s_A77 E3 ubiquitin-protein ligase UHRF2; PHD domain, str 89.68
3v43_A112 Histone acetyltransferase KAT6A; MOZ, PHD finger, 89.51
1wil_A89 KIAA1045 protein; ring finger domain, structural g 88.98
3ask_A226 E3 ubiquitin-protein ligase UHRF1; histone reader 88.59
3kv5_D 488 JMJC domain-containing histone demethylation prote 88.44
3c6w_A59 P28ING5, inhibitor of growth protein 5; chromatin, 88.37
3o70_A68 PHD finger protein 13; PHF13, structural genomics 88.17
3o7a_A52 PHD finger protein 13 variant; PHF13, zinc finger, 88.16
1x4i_A70 Inhibitor of growth protein 3; structural genomics 88.12
1f62_A51 Transcription factor WSTF; Zn-finger; NMR {Homo sa 87.51
3pur_A 528 Lysine-specific demethylase 7 homolog; oxidoreduct 86.84
2vnf_A60 ING 4, P29ING4, inhibitor of growth protein 4; ace 86.79
2g6q_A62 Inhibitor of growth protein 2; protein-peptide com 86.49
3kv4_A 447 PHD finger protein 8; epigenetics, histone CODE, c 84.43
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A Back     alignment and structure
Probab=97.09  E-value=0.0027  Score=58.46  Aligned_cols=58  Identities=22%  Similarity=0.725  Sum_probs=40.8

Q ss_pred             ccccccc-ccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCC-CCC---CCCeeEEcccCCCCchh
Q 014028          122 MCVICNK-FDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKS-GAC---PSEMLFRCRACNRTSEL  187 (432)
Q Consensus       122 ~C~IC~k-fD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g-~~~---~lD~~f~C~~C~~~seL  187 (432)
                      .|+||.+ |+++-....||.||.|..|-|..|.      |+  +... ...   ..+..|+|..|-....-
T Consensus         4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cv------gi--~~~~~e~~~~~pe~~~y~Cp~C~~~~~~   66 (183)
T 3lqh_A            4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCE------NL--SDEMYEILSNLPESVAYTCVNCTERHPA   66 (183)
T ss_dssp             BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGS------SC--CHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred             cCCCCcCccCCcccCCCeEECCCCCcccchhcc------cc--CHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence            4789999 6666557889999999999999996      22  1000 000   01248999999888764
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A* Back     alignment and structure
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A* Back     alignment and structure
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B Back     alignment and structure
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens} Back     alignment and structure
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2 Back     alignment and structure
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A* Back     alignment and structure
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens} Back     alignment and structure
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A* Back     alignment and structure
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A Back     alignment and structure
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A* Back     alignment and structure
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens} Back     alignment and structure
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group} Back     alignment and structure
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2 Back     alignment and structure
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A Back     alignment and structure
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3 Back     alignment and structure
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens} Back     alignment and structure
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A* Back     alignment and structure
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A* Back     alignment and structure
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens} Back     alignment and structure
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens} Back     alignment and structure
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2 Back     alignment and structure
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A* Back     alignment and structure
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A* Back     alignment and structure
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus} Back     alignment and structure
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 432
d1we9a_64 g.50.1.2 (A:) PHD finger protein At5g26210 {Thale 0.003
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64 Back     information, alignment and structure

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 33.9 bits (77), Expect = 0.003
 Identities = 14/63 (22%), Positives = 22/63 (34%), Gaps = 12/63 (19%)

Query: 123 CVICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACN 182
           C  C +         WI CDLC  W H          C+  +        +  ++C +C+
Sbjct: 9   CGACGESYAADEF--WICCDLCEMWFHGK--------CVKITPARAEHIKQ--YKCPSCS 56

Query: 183 RTS 185
             S
Sbjct: 57  NKS 59

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query432
d1wepa_79 PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 96.46
d1we9a_64 PHD finger protein At5g26210 {Thale cress (Arabido 96.39
d1f62a_51 Williams-Beuren syndrome transcription factor, WST 95.5
d1weva_88 PHD finger protein 22 {Mouse (Mus musculus) [TaxId 94.15
d1weea_72 PHD finger protein At1g33420 {Thale cress (Arabido 94.11
d1wema_76 Death associated transcription factor 1, Datf1 (DI 90.53
d1wewa_78 Sumoylation ligase E3, SIZ1 {Thale cress (Arabidop 90.43
d1wila_89 Hypothetical protein KIAA1045 {Human (Homo sapiens 86.82
d1mm2a_61 Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606 86.21
d1wesa_71 PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mu 81.89
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.46  E-value=0.0003  Score=54.18  Aligned_cols=50  Identities=20%  Similarity=0.508  Sum_probs=32.9

Q ss_pred             cccccccCCCCceeEEecCCCcchhhhHhhhhcCCcccCCCCCCCCCCCCeeEEcccCCCCc
Q 014028          124 VICNKFDFEVNTCRWIGCDLCSHWTHTDCAIRDGQICMGPSAKSGACPSEMLFRCRACNRTS  185 (432)
Q Consensus       124 ~IC~kfD~~~d~~~Wi~Cd~Cgh~cHldCALr~~~~g~g~~~~g~~~~lD~~f~C~~C~~~s  185 (432)
                      |||.+-++..  -.||.||.|..|-|..|.      |+..    .....+..|+|..|...+
T Consensus        15 CiC~~~~~~~--~~mI~Cd~C~~W~H~~C~------g~~~----~~~~~~~~~~C~~C~~~~   64 (79)
T d1wepa_          15 CLCRQPYNVN--HFMIECGLCQDWFHGSCV------GIEE----ENAVDIDIYHCPDCEAVF   64 (79)
T ss_dssp             STTSCSCCSS--SCEEEBTTTCCEEEHHHH------TCCH----HHHTTCSBBCCTTTTTTS
T ss_pred             eECCCccCCC--CcEEECCCCCCcEecccc------Ccch----hcCCCCCEEECccCcCCc
Confidence            4788743221  259999999999999996      2210    001233469999997643
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wema_ g.50.1.2 (A:) Death associated transcription factor 1, Datf1 (DIO-1) {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1wewa_ g.50.1.2 (A:) Sumoylation ligase E3, SIZ1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mm2a_ g.50.1.2 (A:) Mi2-beta (CHD4) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wesa_ g.50.1.2 (A:) PHD Inhibitor of growth protein 2, Ing2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure