Citrus Sinensis ID: 014089

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-
Protein Sequence
MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGANQPKGDRG
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEEEEccccccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHcHHHHHHHHHcccccccccccccccccccccccccccccccccccccccHHHHHcccccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcccccccccccccccccEEEEEEccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHcccccHHHHHHHHHHHHHHHHHHEEEEcHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHccHHHHHHHHHcccccccccccccccccccccEcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mgcflstskdtggnrrrpgnigevsvyvpglripkpvdfsqslgdNLSKNMVERLSALRTRIVVMAaqegptitrtrrksatqhggstLADLHQALEDYLPVLLGLVkdgsqlqyKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLllprtsadgyqpkvseesrRASVDIFLKAAGyldcavrhvlpqmspelrrelpvdlaEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNImnlplangwgekhKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEafnvapplsrnpplwgtMKYLsekipkdtsskvrinrdLYSYEKImetaptlpdfalalkpdefqlppvhpswtdenmnrgqaganqpkgdrg
Flexible Loop (DISEMBL)
mgcflstskdtggnrrrpgnigeVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVmaaqegptitrtrrksatqhgGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADgyqpkvseesrrASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAfnvapplsrnpplWGTMKYLsekipkdtsskvriNRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVhpswtdenmnrgqaganqpkgdrg
Low Complexity Region (SEG)
MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHlmamlslsqanllllPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGANQPKGDRG
Disordered region (IsUnstruct)
*********************GEVSVYVPGLRIPKPVDF***********MVERLSALRTRIVVMAA*********************LADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWV***********SNAWYEVLSVLHLMAMLSLSQANLLLLPR*****************SVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSE*********VRINRDLYSYEKIMETAPTLPDFALALK*********************************
Disordered Region (DISOPRED)
**********************EVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGP****************TLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLL******************RASVDIFLKAAGYLDCAVRHVLP*************LAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLL******FHGMAVAALQAADEYFKESKKACE***V*****RNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTD******************
Disordered Region (DISEMBL)
**************RRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTIT************STLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSAD***********RASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRG************
Disordered Region (DISPRO)
******************GNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGP**************GSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTD******************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNRGQAGANQPKGDRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
359489921	426	PREDICTED: uncharacterized protein LOC10	0.981	0.992	0.833	0.0
224076890	425	predicted protein [Populus trichocarpa]	0.972	0.985	0.817	0.0
356576604	425	PREDICTED: uncharacterized protein LOC10	0.969	0.983	0.845	0.0
356535288	425	PREDICTED: uncharacterized protein LOC10	0.969	0.983	0.835	0.0
356559999	425	PREDICTED: uncharacterized protein LOC10	0.979	0.992	0.803	0.0
297842093	424	hypothetical protein ARALYDRAFT_895200 [	0.976	0.992	0.784	0.0
255557094	420	conserved hypothetical protein [Ricinus	0.967	0.992	0.800	0.0
356531017	425	PREDICTED: uncharacterized protein LOC10	0.979	0.992	0.801	0.0
15219459	419	Endosomal targeting BRO1-like domain-con	0.946	0.973	0.784	0.0
449439525	402	PREDICTED: uncharacterized protein LOC10	0.921	0.987	0.781	0.0

>gi|359489921|ref|XP_002264045.2| PREDICTED: uncharacterized protein LOC100266486 [Vitis vinifera] gi|297737210|emb|CBI26411.3| unnamed protein product [Vitis vinifera]

 Score =  723 bits (1865), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/432 (83%), Positives = 392/432 (90%), Gaps = 9/432 (2%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGCF+ST  DTGGNRRRPGNIGEVSV++PG RIPKP+DFS+SLGD+LSKN++ERL+ALRT
Sbjct: 1   MGCFVSTPTDTGGNRRRPGNIGEVSVFIPGFRIPKPLDFSKSLGDHLSKNLLERLTALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA  E PTITRTRRK+ATQHGGSTLADL QALEDYLPVLLGLVKDGSQLQ+KVQFV
Sbjct: 61  RIVVMAGHEAPTITRTRRKTATQHGGSTLADLLQALEDYLPVLLGLVKDGSQLQHKVQFV 120

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           WVNQED+AEET +SNAWYEVLSVLHLMAML LSQANLLLLPRTS+DGYQPKVSEESRRAS
Sbjct: 121 WVNQEDDAEETTMSNAWYEVLSVLHLMAMLLLSQANLLLLPRTSSDGYQPKVSEESRRAS 180

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           +DIFLKAAGYLDCAV+HVLPQ+S ELRR LPVDLAEG LRALCLQALGQGVDIQLGMAID
Sbjct: 181 IDIFLKAAGYLDCAVKHVLPQLSSELRRNLPVDLAEGVLRALCLQALGQGVDIQLGMAID 240

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILI-- 298
           STKATLAVKRRLACEMVKYWQQAQDNIMNLPL NGWGEKHKLFVKWKY EAK        
Sbjct: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLTNGWGEKHKLFVKWKYVEAKATAYYYHG 300

Query: 299 VLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKY 358
           +++D+        +EK HGMAVAALQAADEY KESK+ACEAFN+APPLSRNPPLWGTMKY
Sbjct: 301 LILDEG------NTEKSHGMAVAALQAADEYLKESKRACEAFNMAPPLSRNPPLWGTMKY 354

Query: 359 LSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNR 418
           LSEKIPKDTSSKVRINRDLYS+++IMETAP LPDFALALKPD++QLPPV PSW D N+N+
Sbjct: 355 LSEKIPKDTSSKVRINRDLYSHQRIMETAPQLPDFALALKPDDYQLPPVDPSWND-NINK 413

Query: 419 GQAGANQPKGDR 430
           GQ+  NQ K DR
Sbjct: 414 GQSATNQLKTDR 425

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224076890|ref|XP_002305035.1| predicted protein [Populus trichocarpa] gi|118488314|gb|ABK95976.1| unknown [Populus trichocarpa] gi|222847999|gb|EEE85546.1| predicted protein [Populus trichocarpa]

 Score =  716 bits (1848), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 349/427 (81%), Positives = 381/427 (89%), Gaps = 8/427 (1%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGC +ST +D+GGNRRRPG+IG+VSVYVPG RIPKPVDFS SLGD+L KN+V+ LSALRT
Sbjct: 1   MGCLVSTPQDSGGNRRRPGSIGDVSVYVPGFRIPKPVDFSLSLGDHLPKNLVKSLSALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QE PT++RTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQ+ VQFV
Sbjct: 61  RIVVMAGQEAPTVSRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQHNVQFV 120

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           W+NQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTS+DGYQPKVSEESRRAS
Sbjct: 121 WMNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSSDGYQPKVSEESRRAS 180

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           +DIFLKAAGYLDCAV++VLPQ+   LR+ELPVDLAEG LRALCLQALGQ VDIQLGMAID
Sbjct: 181 IDIFLKAAGYLDCAVQNVLPQLPNPLRKELPVDLAEGVLRALCLQALGQSVDIQLGMAID 240

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILI-- 298
           S KATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKH+L ++WKY EAK        
Sbjct: 241 SAKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHRLLIEWKYVEAKAAAYYYHG 300

Query: 299 VLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKY 358
           +++D+        +EK HGMAVAALQAADEYFKESK+ACEAFN A PLSR P LWGTMKY
Sbjct: 301 LILDEG------NTEKSHGMAVAALQAADEYFKESKRACEAFNAASPLSRKPLLWGTMKY 354

Query: 359 LSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNR 418
           LS+KIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPD+FQLPP   SW +EN+  
Sbjct: 355 LSDKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDDFQLPPADSSWNEENVVA 414

Query: 419 GQAGANQ 425
           GQA +N 
Sbjct: 415 GQASSNH 421

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576604|ref|XP_003556420.1| PREDICTED: uncharacterized protein LOC100781733 [Glycine max]

 Score =  713 bits (1840), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 360/426 (84%), Positives = 382/426 (89%), Gaps = 8/426 (1%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGCF+ST KD+GGNRRRPG+IGEVSVYVPGLRIPKPVDF+QSLGD LSKN+VERLSALRT
Sbjct: 1   MGCFVSTPKDSGGNRRRPGSIGEVSVYVPGLRIPKPVDFAQSLGDYLSKNIVERLSALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QEGPTITRT+RKSATQHGGSTLADL QALEDYL VLLGLV++GS LQYKVQF 
Sbjct: 61  RIVVMAGQEGPTITRTKRKSATQHGGSTLADLQQALEDYLLVLLGLVENGSHLQYKVQFA 120

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           WVNQEDEAEET +SNAWYEVLSVLHLMAML LSQ++LLLLPRTS DG+QPKVSEESRRAS
Sbjct: 121 WVNQEDEAEETTMSNAWYEVLSVLHLMAMLLLSQSDLLLLPRTSTDGHQPKVSEESRRAS 180

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           VDIFLKAAGYLDCAVRHVLPQ+  ELRR LPVDLAEG LRALCLQALGQGVDIQLGMAID
Sbjct: 181 VDIFLKAAGYLDCAVRHVLPQLPGELRRNLPVDLAEGVLRALCLQALGQGVDIQLGMAID 240

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILI-- 298
           STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKH LFVKWKY EAK        
Sbjct: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHCLFVKWKYIEAKAAAYYYHG 300

Query: 299 VLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKY 358
           +++D+        +EK  GMAVAALQAADEYFKESKK CEAFN APPLSRNPPLWGTMKY
Sbjct: 301 LILDEG------NTEKSQGMAVAALQAADEYFKESKKLCEAFNAAPPLSRNPPLWGTMKY 354

Query: 359 LSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNR 418
           L EKIPKDTSSKVRINRDLYSYE+IMETAPTLPDFALALKPDE+QLP V PSW  EN+  
Sbjct: 355 LYEKIPKDTSSKVRINRDLYSYERIMETAPTLPDFALALKPDEYQLPQVDPSWRTENVKG 414

Query: 419 GQAGAN 424
           GQ+GA 
Sbjct: 415 GQSGAT 420

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535288|ref|XP_003536180.1| PREDICTED: uncharacterized protein LOC100813397 [Glycine max]

 Score =  709 bits (1829), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/426 (83%), Positives = 380/426 (89%), Gaps = 8/426 (1%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGCF+ST KD+GGNRRRPG+IGEVSVYVPGLRIPKPVDF+QSLGD LSKN+VERLSALRT
Sbjct: 1   MGCFVSTPKDSGGNRRRPGSIGEVSVYVPGLRIPKPVDFTQSLGDYLSKNIVERLSALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QEGPTITRT+RKSATQHGGSTLADL QALEDYLPVLLGLV++GS LQYKVQF 
Sbjct: 61  RIVVMAGQEGPTITRTKRKSATQHGGSTLADLQQALEDYLPVLLGLVENGSHLQYKVQFD 120

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           WVNQED+ EET +SNAWYEVLSVLHLMAML LSQANLLLLPRTS D +QPKVSEESRRAS
Sbjct: 121 WVNQEDDTEETTMSNAWYEVLSVLHLMAMLLLSQANLLLLPRTSTDSHQPKVSEESRRAS 180

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           VDIFLKAAGYLDCAVRHVLPQ+  ELRR LPVDL EG LRALCLQALGQGVDIQLGMAID
Sbjct: 181 VDIFLKAAGYLDCAVRHVLPQLPGELRRNLPVDLTEGVLRALCLQALGQGVDIQLGMAID 240

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILI-- 298
           STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKH+LFVKWKY EAK        
Sbjct: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHRLFVKWKYIEAKAAAYYYHG 300

Query: 299 VLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKY 358
           +++D+        +EK HGMAVA+LQAADEYFKESKK CEAFN  PPLSRNPPLWGTMKY
Sbjct: 301 LILDEG------NTEKSHGMAVASLQAADEYFKESKKLCEAFNAVPPLSRNPPLWGTMKY 354

Query: 359 LSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNR 418
           L EKIPKDTSSKVRINRDLYSYE+IMETAPTLPDFALALKPDE+QLP + PSW  EN+  
Sbjct: 355 LYEKIPKDTSSKVRINRDLYSYERIMETAPTLPDFALALKPDEYQLPQMDPSWRTENVKD 414

Query: 419 GQAGAN 424
           GQ+G  
Sbjct: 415 GQSGTT 420

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559999|ref|XP_003548283.1| PREDICTED: uncharacterized protein LOC100809057 [Glycine max]

 Score =  698 bits (1801), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 348/433 (80%), Positives = 376/433 (86%), Gaps = 11/433 (2%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGC +S  KD+GGNRRRPG+IGE+SVYVPGLRIPKPVDF+QSLGD LSKN+VERLSALRT
Sbjct: 1   MGCVVSAPKDSGGNRRRPGSIGELSVYVPGLRIPKPVDFAQSLGDYLSKNIVERLSALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QEGPTITRT+RK  TQHGGSTLADL QALEDYLPV+LGLVK+GS LQYKVQF 
Sbjct: 61  RIVVMAGQEGPTITRTKRK--TQHGGSTLADLLQALEDYLPVVLGLVKNGSHLQYKVQFT 118

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSA-DGYQPKVSEESRRA 179
           WVNQED+ EET +SNAWYEVLSVLHLMAMLSLSQANLLL PR+S+ +G+ PKVSEESRRA
Sbjct: 119 WVNQEDDKEETTMSNAWYEVLSVLHLMAMLSLSQANLLLFPRSSSSNGHLPKVSEESRRA 178

Query: 180 SVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAI 239
           SVDIFLKAAGYLDCAV+HVLPQ+  ELRR LPVDLAEG LRALCLQALGQ +DIQLGMAI
Sbjct: 179 SVDIFLKAAGYLDCAVKHVLPQLPVELRRNLPVDLAEGVLRALCLQALGQAIDIQLGMAI 238

Query: 240 DSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILI- 298
           DSTKATLAVKRRLACEMVK WQQAQDNIMNLPLANGWGEKH LFVKWKY EAK       
Sbjct: 239 DSTKATLAVKRRLACEMVKCWQQAQDNIMNLPLANGWGEKHCLFVKWKYVEAKAAAYYYH 298

Query: 299 -VLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMK 357
            +++D+        +EK HGMAVAALQAADEYFKESKK CEAFN A PLSRN P WGTMK
Sbjct: 299 GLILDEG------NTEKSHGMAVAALQAADEYFKESKKLCEAFNAASPLSRNSPPWGTMK 352

Query: 358 YLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMN 417
           YLSEKIPKDTSSKVRINRDLYSYE+IMETAPTLPDF+LALKPDE+QLP V  SW  EN+ 
Sbjct: 353 YLSEKIPKDTSSKVRINRDLYSYERIMETAPTLPDFSLALKPDEYQLPQVDSSWRTENIK 412

Query: 418 RGQAGANQPKGDR 430
            GQ   N  KGD+
Sbjct: 413 VGQTDPNHLKGDK 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842093|ref|XP_002888928.1| hypothetical protein ARALYDRAFT_895200 [Arabidopsis lyrata subsp. lyrata] gi|297334769|gb|EFH65187.1| hypothetical protein ARALYDRAFT_895200 [Arabidopsis lyrata subsp. lyrata]

 Score =  689 bits (1778), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/432 (78%), Positives = 373/432 (86%), Gaps = 11/432 (2%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGCF S  KDTGGNRR+P +IG+VSVYVPGLRIPKPV+FSQSLGD L K +VERL+ALRT
Sbjct: 1   MGCFASRPKDTGGNRRKPTSIGDVSVYVPGLRIPKPVEFSQSLGDQLPKTLVERLTALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QEGPTITRTRRK  TQHGGSTLADLHQALEDYLPVLLGL KDGS LQ KVQF 
Sbjct: 61  RIVVMANQEGPTITRTRRK--TQHGGSTLADLHQALEDYLPVLLGLTKDGSHLQCKVQFN 118

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           WVNQEDE EETAISN WYE+LSVLHLMAML +SQANLLLLPR S+DGY PK+SEE+RRAS
Sbjct: 119 WVNQEDEQEETAISNVWYEILSVLHLMAMLQMSQANLLLLPRGSSDGYHPKISEENRRAS 178

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           +DIFLKAAGYLDCAV+HVLPQ S ELRR LPVDLAEG LRALCLQALGQGVDIQLGMAID
Sbjct: 179 IDIFLKAAGYLDCAVKHVLPQFSTELRRSLPVDLAEGALRALCLQALGQGVDIQLGMAID 238

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILI-- 298
           S KATLAVKRRL+CEMVKYWQQAQDN+MNLPLANGWGEKH LFVKWKY EAK        
Sbjct: 239 SAKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHSLFVKWKYVEAKAAAYYYHG 298

Query: 299 VLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKY 358
           +++D+        +EK HGMAVAALQAADE +KESKKA EAFN + P SR PPL+GTMKY
Sbjct: 299 LILDEG------NTEKSHGMAVAALQAADECYKESKKASEAFNTSSPTSRTPPLFGTMKY 352

Query: 359 LSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNR 418
           LSEKIPK+TSSKVRINRDLYSYEKIMETAPTLPDFALALKPDE+QLP V  SW+++++  
Sbjct: 353 LSEKIPKETSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLPSVDASWSEDSLQT 412

Query: 419 GQAGANQPKGDR 430
            +  +N  KG++
Sbjct: 413 KKT-SNHIKGNQ 423

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557094|ref|XP_002519579.1| conserved hypothetical protein [Ricinus communis] gi|223541237|gb|EEF42790.1| conserved hypothetical protein [Ricinus communis]

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 346/432 (80%), Positives = 380/432 (87%), Gaps = 15/432 (3%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGC +ST K++GGNRR+PG+IGEV VY+PG RIPK VDFS SLGD+LSKN+VERLSALRT
Sbjct: 1   MGCIVSTPKESGGNRRKPGSIGEVFVYIPGFRIPKAVDFSVSLGDHLSKNLVERLSALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QE PT+TRT+RK+ATQHGGSTLADLHQALEDYLP+LLGLVKDGS LQ+KVQFV
Sbjct: 61  RIVVMAGQEAPTVTRTKRKNATQHGGSTLADLHQALEDYLPILLGLVKDGSHLQHKVQFV 120

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           W+NQED+AEETA+SNAWYEVLSVLHLMAML LSQANLLLLPRTSADGYQPKVS ESRRAS
Sbjct: 121 WINQEDDAEETAMSNAWYEVLSVLHLMAMLLLSQANLLLLPRTSADGYQPKVSAESRRAS 180

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           +DIFLKAAGYLDCAVRHVLPQ    LRR+LPVDLAEG LRALCLQALGQ VDIQLGMAID
Sbjct: 181 IDIFLKAAGYLDCAVRHVLPQFPAALRRDLPVDLAEGVLRALCLQALGQVVDIQLGMAID 240

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILI-- 298
           S KATLAVKRRLACEMVKYWQQAQDN+MNL L NGWGEKH+LFVKWKY EAK        
Sbjct: 241 SAKATLAVKRRLACEMVKYWQQAQDNLMNLLLTNGWGEKHRLFVKWKYVEAKAAAYYYHG 300

Query: 299 VLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKY 358
           +++D+        +EK HGMAVAALQAADEYFKES++ACEAFN A PLSRNPPLWGT+KY
Sbjct: 301 LILDEG------NTEKSHGMAVAALQAADEYFKESRRACEAFNAASPLSRNPPLWGTVKY 354

Query: 359 LSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMNR 418
           LSEKIPKDTSSKVRINRDLYS+EKIMETAPTLPDFAL+LKPD++QLP V  SW +EN+  
Sbjct: 355 LSEKIPKDTSSKVRINRDLYSHEKIMETAPTLPDFALSLKPDDYQLPSVDSSWNEENV-- 412

Query: 419 GQAGANQPKGDR 430
                NQ KGDR
Sbjct: 413 -----NQLKGDR 419

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531017|ref|XP_003534075.1| PREDICTED: uncharacterized protein LOC100820472 [Glycine max]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 347/433 (80%), Positives = 377/433 (87%), Gaps = 11/433 (2%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGC +ST+KD+GGNRRRPG+IGEVSVYVPGLRIPKPVDF+QSLG+ LSKN+VE LSALR 
Sbjct: 1   MGCVVSTTKDSGGNRRRPGSIGEVSVYVPGLRIPKPVDFAQSLGNYLSKNIVEHLSALRM 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIV+MA QEGPTITRT+RK  TQHGGS LADL QALEDYLPV+LGLVKDGS LQYKVQF 
Sbjct: 61  RIVIMAGQEGPTITRTKRK--TQHGGSMLADLLQALEDYLPVVLGLVKDGSHLQYKVQFT 118

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSA-DGYQPKVSEESRRA 179
           WVNQED+ EET +SNAWYEVLSVLHLMAMLSLSQANLLLLPR+S+ DG+ PKVSEESRR 
Sbjct: 119 WVNQEDDKEETTMSNAWYEVLSVLHLMAMLSLSQANLLLLPRSSSSDGHLPKVSEESRRT 178

Query: 180 SVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAI 239
           SVDIFLKAAGYLDCAV+HVLPQ+  ELRR LPVDLAEG LRALCLQALGQG+DIQLGMAI
Sbjct: 179 SVDIFLKAAGYLDCAVKHVLPQLPVELRRNLPVDLAEGVLRALCLQALGQGIDIQLGMAI 238

Query: 240 DSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILI- 298
           DSTKATLAVKRRLACEMVK WQQAQDNIMNLPLANGWGEKH LFVKWKY EAK       
Sbjct: 239 DSTKATLAVKRRLACEMVKCWQQAQDNIMNLPLANGWGEKHCLFVKWKYVEAKAAAYYYH 298

Query: 299 -VLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMK 357
            +++D+        +EK HGMAVAALQAADEY+KESKK CEAFN A PLSRNPP WGT+K
Sbjct: 299 GLILDEG------NTEKSHGMAVAALQAADEYYKESKKLCEAFNAASPLSRNPPPWGTVK 352

Query: 358 YLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENMN 417
           YLSEKIPKDTSSKVRINRDLYSYE+IMETAPTLPDF+LALKPDE+QLP V  SW  EN+ 
Sbjct: 353 YLSEKIPKDTSSKVRINRDLYSYERIMETAPTLPDFSLALKPDEYQLPQVDSSWRTENIK 412

Query: 418 RGQAGANQPKGDR 430
            GQ   N  KGD+
Sbjct: 413 VGQTDPNHLKGDK 425

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219459|ref|NP_177482.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|42572093|ref|NP_974137.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|42572095|ref|NP_974138.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|11120790|gb|AAG30970.1|AC012396_6 hypothetical protein [Arabidopsis thaliana] gi|18252173|gb|AAL61919.1| unknown protein [Arabidopsis thaliana] gi|54606850|gb|AAV34773.1| At1g73390 [Arabidopsis thaliana] gi|332197332|gb|AEE35453.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|332197333|gb|AEE35454.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana] gi|332197334|gb|AEE35455.1| Endosomal targeting BRO1-like domain-containing protein [Arabidopsis thaliana]

 Score =  673 bits (1737), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 328/418 (78%), Positives = 360/418 (86%), Gaps = 10/418 (2%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGCF S   DTGGNRR+P +IG+VSVYVPGLRIPKPV+FSQSLGD L K +VERL+ALRT
Sbjct: 1   MGCFASRPNDTGGNRRKPTSIGDVSVYVPGLRIPKPVEFSQSLGDQLPKTLVERLTALRT 60

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RIVVMA QEGPTITRTRRK  TQHGGSTLADLH ALEDY+PVLLGL KDGS LQ+KVQF 
Sbjct: 61  RIVVMANQEGPTITRTRRK--TQHGGSTLADLHHALEDYIPVLLGLTKDGSHLQFKVQFN 118

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           WVNQEDE EETA+SN WYE+LSVLHLMAML +SQANLLLLPR S+DGY PK+SEE+RRAS
Sbjct: 119 WVNQEDEEEETAMSNVWYEILSVLHLMAMLQMSQANLLLLPRGSSDGYHPKISEENRRAS 178

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           +DIFLKAAGYLDCAV+HVLP  S E RR LP+DLAEG LRALCLQALGQGVDIQLGMAID
Sbjct: 179 IDIFLKAAGYLDCAVKHVLPHFSTEQRRSLPIDLAEGALRALCLQALGQGVDIQLGMAID 238

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILI-- 298
           S KATLAVKRRL+CEMVKYWQQAQDN+MNLPLANGWGEKH LFVKWKY EAK        
Sbjct: 239 SAKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHMLFVKWKYVEAKAAAYYYHG 298

Query: 299 VLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKY 358
           +++D+        +EK HGMAVAALQAADE  KESKKA EAFN + P SR P L+GTMKY
Sbjct: 299 LILDEG------NTEKSHGMAVAALQAADECLKESKKASEAFNTSSPTSRTPSLFGTMKY 352

Query: 359 LSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENM 416
           LSEKIPK+TSSKVRINRDLYSYEKIMETAPTLPDFALALKPDE+QLP V  SW++ ++
Sbjct: 353 LSEKIPKETSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLPSVDASWSEASL 410

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439525|ref|XP_004137536.1| PREDICTED: uncharacterized protein LOC101207897 [Cucumis sativus] gi|449514864|ref|XP_004164501.1| PREDICTED: uncharacterized LOC101207897 [Cucumis sativus]

 Score =  671 bits (1732), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/434 (78%), Positives = 362/434 (83%), Gaps = 37/434 (8%)

Query: 1   MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
           MGC  S   D GGNRRRPGNIGEVSVYVP                           ALRT
Sbjct: 1   MGCLASKPADNGGNRRRPGNIGEVSVYVP---------------------------ALRT 33

Query: 61  RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
           RI+VMA QEGPTITRTRRK+ATQHGGSTLADL QALEDYLPVLLGLVKDG+QLQ+KVQF 
Sbjct: 34  RIIVMAGQEGPTITRTRRKTATQHGGSTLADLQQALEDYLPVLLGLVKDGNQLQHKVQFA 93

Query: 121 WVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 180
           W+NQED+ EETA+SNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS
Sbjct: 94  WINQEDDLEETAMSNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS 153

Query: 181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
           +DIF+KAAGYLDCAVRHVLPQ+  E RR LPVDLAEG LRALCLQALGQGVDIQLGMAID
Sbjct: 154 IDIFVKAAGYLDCAVRHVLPQLPVEFRRNLPVDLAEGVLRALCLQALGQGVDIQLGMAID 213

Query: 241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILI-- 298
           STKATLAVKRRLACEMVKYWQQAQDNIMNLPL+NGWGEKH+LFVKWKY EAK        
Sbjct: 214 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLSNGWGEKHRLFVKWKYIEAKAAAYYYHG 273

Query: 299 VLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKY 358
           +++D+        +EK HGMAVAALQAADEYFKESKKACEAFN APPLSRNPPL+GTMKY
Sbjct: 274 LILDEG------NTEKSHGMAVAALQAADEYFKESKKACEAFNSAPPLSRNPPLFGTMKY 327

Query: 359 LSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENM-N 417
           LSEKIPKD SSKVRINRDLYS+EKI+ETAPTLPDFALALKPDEFQLP V PSW +EN+ N
Sbjct: 328 LSEKIPKDASSKVRINRDLYSFEKIVETAPTLPDFALALKPDEFQLPAVDPSWNEENIVN 387

Query: 418 RGQAGA-NQPKGDR 430
           RGQ  A  Q K D+
Sbjct: 388 RGQVVAPKQLKSDQ 401

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	431
TAIR|locus:2206845	419	AT1G73390 "AT1G73390" [Arabido	0.946	0.973	0.753	3.4e-164
TAIR|locus:2030893	405	AT1G17940 "AT1G17940" [Arabido	0.921	0.980	0.769	8.4e-161
TAIR|locus:2159103	401	AT5G14020 [Arabidopsis thalian	0.888	0.955	0.369	3.6e-57

TAIR|locus:2206845 AT1G73390 "AT1G73390" [Arabidopsis thaliana (taxid:3702)]

 Score = 1598 (567.6 bits), Expect = 3.4e-164, P = 3.4e-164
 Identities = 315/418 (75%), Positives = 346/418 (82%)

Query:     1 MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
             MGCF S   DTGGNRR+P +IG+VSVYVPGLRIPKPV+FSQSLGD L K +VERL+ALRT
Sbjct:     1 MGCFASRPNDTGGNRRKPTSIGDVSVYVPGLRIPKPVEFSQSLGDQLPKTLVERLTALRT 60

Query:    61 RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
             RIVVMA QEGPTITRTRRK  TQHGGSTLADLH ALEDY+PVLLGL KDGS LQ+KVQF 
Sbjct:    61 RIVVMANQEGPTITRTRRK--TQHGGSTLADLHHALEDYIPVLLGLTKDGSHLQFKVQFN 118

Query:   121 WVNQEDEAEETAISNAWYEVLSVLHXXXXXXXXXXXXXXXPRTSADGYQPKVSEESRRAS 180
             WVNQEDE EETA+SN WYE+LSVLH               PR S+DGY PK+SEE+RRAS
Sbjct:   119 WVNQEDEEEETAMSNVWYEILSVLHLMAMLQMSQANLLLLPRGSSDGYHPKISEENRRAS 178

Query:   181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAID 240
             +DIFLKAAGYLDCAV+HVLP  S E RR LP+DLAEG LRALCLQALGQGVDIQLGMAID
Sbjct:   179 IDIFLKAAGYLDCAVKHVLPHFSTEQRRSLPIDLAEGALRALCLQALGQGVDIQLGMAID 238

Query:   241 STKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILI-- 298
             S KATLAVKRRL+CEMVKYWQQAQDN+MNLPLANGWGEKH LFVKWKY EAK        
Sbjct:   239 SAKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHMLFVKWKYVEAKAAAYYYHG 298

Query:   299 VLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKY 358
             +++D+        +EK HGMAVAALQAADE  KESKKA EAFN + P SR P L+GTMKY
Sbjct:   299 LILDEG------NTEKSHGMAVAALQAADECLKESKKASEAFNTSSPTSRTPSLFGTMKY 352

Query:   359 LSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLPPVHPSWTDENM 416
             LSEKIPK+TSSKVRINRDLYSYEKIMETAPTLPDFALALKPDE+QLP V  SW++ ++
Sbjct:   353 LSEKIPKETSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLPSVDASWSEASL 410

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2030893 AT1G17940 "AT1G17940" [Arabidopsis thaliana (taxid:3702)]

 Score = 1566 (556.3 bits), Expect = 8.4e-161, P = 8.4e-161
 Identities = 314/408 (76%), Positives = 340/408 (83%)

Query:     1 MGCFLSTSKDTGGNRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRT 60
             MGCF ST KD+GGNRR+P +IGEVSVYVPGLRIP+ VDF QSLGD L K +VERL+ALRT
Sbjct:     1 MGCFASTPKDSGGNRRKPTSIGEVSVYVPGLRIPRAVDFLQSLGDQLPKTLVERLTALRT 60

Query:    61 RIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFV 120
             RIVVMA QEGPTITRTRRK  TQHGGSTL DLHQAL DYLPV+LGL KDGS LQ+KVQF 
Sbjct:    61 RIVVMANQEGPTITRTRRK--TQHGGSTLLDLHQALLDYLPVVLGLTKDGSHLQFKVQFN 118

Query:   121 WVNQEDEAEETAISNAWYEVLSVLHXXXXXXXXXXXXXXXPRTSADGYQ-PKVSEESRRA 179
             WVNQEDE EET +SN WYEVLSVLH               PR S+DG+  PKVSEE+RR 
Sbjct:   119 WVNQEDEEEETEMSNVWYEVLSVLHLMAMLQMSQANLLLLPRGSSDGHNHPKVSEENRRT 178

Query:   180 SVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAI 239
             S+DIFLKAAGYLDCAV+HVLPQ S E RR LPVDLAEG LRALCLQALGQGVDIQLGMAI
Sbjct:   179 SIDIFLKAAGYLDCAVKHVLPQFSAEQRRSLPVDLAEGTLRALCLQALGQGVDIQLGMAI 238

Query:   240 DSTKATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILI- 298
             DS+KATLAVKRRL+CEMVKYWQQAQDN+MNLPLANGWGEKH LFVKWKY EAK       
Sbjct:   239 DSSKATLAVKRRLSCEMVKYWQQAQDNLMNLPLANGWGEKHGLFVKWKYVEAKAAAYYYH 298

Query:   299 -VLVDQTWFLLLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMK 357
              +++D+        +EK HGMAVAALQAADE FKESKKA EAFN + P SR PPL+GTMK
Sbjct:   299 GLILDEG------NTEKSHGMAVAALQAADECFKESKKASEAFNASAPTSRTPPLFGTMK 352

Query:   358 YLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEFQLP 405
             YL+EKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDE+QLP
Sbjct:   353 YLTEKIPKDTSSKVRINRDLYSYEKIMETAPTLPDFALALKPDEYQLP 400

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

TAIR|locus:2159103 AT5G14020 [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 155/419 (36%), Positives = 225/419 (53%)

Query:     1 MGCFLSTSKDTGG-NRRRPGNIGEVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALR 59
             MGC  ST    G  N++R   I E  V+V   R+P   D  + L     K  + RL+ LR
Sbjct:     1 MGCAQSTIAVVGRKNKKRI--IQESVVFVLQFRVPVQSDLQRQLKGVSPKTTINRLTCLR 58

Query:    60 TRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGSQ-LQYKVQ 118
              +I ++A   G               GS +++L  ALE+YL +L GL+K     ++  V+
Sbjct:    59 NQIELVAEDTG---------------GSAISELRTALEEYLSLLSGLIKKSKDGMEGCVE 103

Query:   119 FVWVNQED-EAEETAISNAWYEVLSVLHXXXXXXXXXXXXXXXPR---TSADGYQPKV-S 173
               W    D    E   +N W E+L V+H               P+    S  G   +V S
Sbjct:   104 LKWRTLGDGRRAEICCTNLWMEMLIVIHMMAALALTEANSLMIPKDCYASGSGNGVRVVS 163

Query:   174 EESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDI 233
              + RR +VD+ LKA+GYL+  VR +L Q+  +++ +LP D+ E  L+ L +QALGQG +I
Sbjct:   164 TDCRRDAVDLLLKASGYLEFCVREILTQLPHDIKSKLPDDMQESVLQTLSIQALGQGTEI 223

Query:   234 QLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMNLP-LANGWGEKHKLFVKWKYFEAK 292
             QLG+A+DS KATL+VKRR+ACE V Y+ QA   + +   +++G  +K   F+ WK+ EAK
Sbjct:   224 QLGLAVDSQKATLSVKRRIACEQVIYFTQAYHCLSSCEAVSHGCAKKLLRFIYWKFLEAK 283

Query:   293 LLNILI--VLVDQTWFLLLLPSEKF-HGMAVAALQAADEYFKESKKACEAFNVAPPLSRN 349
                     ++ D+        SE   H  AV    AA E   ESKKAC +F +APP++R 
Sbjct:   284 AAAYYYHGLVTDKG-------SEPACHLSAVCCFLAAAEILGESKKACLSFCLAPPVTRA 336

Query:   350 PPLWGTMKYLSEKIPKDTSSKVRINRDLYSYE-KIMETAPTLPDFALALKPDEFQLPPV 407
             PP+WG MK+LS+KIP+    K +    L   E K M+  P LPDF L+L+PD+F+LP +
Sbjct:   337 PPMWGVMKHLSQKIPEVAFRKSQTYGYLLEEEEKAMQCLPELPDFQLSLRPDDFELPEI 395


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.134   0.399    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      431       416   0.00081  118 3  11 22  0.41    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  267 KB (2141 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  33.13u 0.09s 33.22t   Elapsed:  00:00:01
  Total cpu time:  33.14u 0.09s 33.23t   Elapsed:  00:00:01
  Start:  Thu May  9 23:10:01 2013   End:  Thu May  9 23:10:02 2013

GO:0005773 "vacuole" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	431
cd09034	345	cd09034, BRO1_Alix_like, Protein-interacting Bro1-	9e-87
pfam03097	374	pfam03097, BRO1, BRO1-like domain	3e-58
smart01041	381	smart01041, BRO1, BRO1-like domain	3e-40
cd09245	413	cd09245, BRO1_UmRIM23-like, Protein-interacting, B	8e-04

>gnl|CDD|185761 cd09034, BRO1_Alix_like, Protein-interacting Bro1-like domain of mammalian Alix and related domains

 Score =  267 bits (685), Expect = 9e-87
 Identities = 122/386 (31%), Positives = 176/386 (45%), Gaps = 57/386 (14%)

Query: 23  EVSVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSAT 82
           +V V +    IPK     +       ++++E+LS LR  IV                   
Sbjct: 13  DVKVPLSK-FIPKNYGELE---ATAVEDLIEKLSKLRNNIVTE----------------- 51

Query: 83  QHGGSTLADLHQALEDYLPVLLGLVK--DGSQLQYKVQFVWVNQEDEAEETAISNAWYEV 140
           Q+  +T  +L +AL++YLP LLGL K     +L+  V+F W +  D  +E+A ++  YE+
Sbjct: 52  QNNDTTCENLLEALKEYLPYLLGLEKKLPFQKLRDNVEFTWTDSFDTKKESA-TSLRYEL 110

Query: 141 LSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLP 200
           LS+L  +A L+   AN  L+            SEE  + ++    KAAGY +    HVLP
Sbjct: 111 LSILFNLAALASQLANEKLITG----------SEEDLKQAIKSLQKAAGYFEYLKEHVLP 160

Query: 201 QMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYW 260
               EL    PVDL E  L AL L  L Q  +  L  A +  KA L++  RLACE  KY+
Sbjct: 161 LPPDEL----PVDLTEAVLSALSLIMLAQAQECFLLKAEEDKKAKLSLLARLACEAAKYY 216

Query: 261 QQAQDNI--MNLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGM 318
           ++A   +  ++L       +K  LF+KWK    K L          +  L L      G 
Sbjct: 217 EEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALA-------YYYHGLKLDEANKIGE 269

Query: 319 AVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLY 378
           A+A LQAA E  KES++ C++F           +WG +K L EKI K+     R N  +Y
Sbjct: 270 AIARLQAALELLKESERLCKSF--------LLDVWGNLKKLKEKIEKELEKAERENDFIY 321

Query: 379 SYEKIMETAPTLPDFALALKPDEFQL 404
             E   E    LP+   AL      L
Sbjct: 322 FEEVPPED--PLPEIKGALLVKPPPL 345

This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 (in the case of Alix, HD-PTP, and Brox) and Snf7 (in the case of yeast Bro1, and Rim20). The single domain protein human Brox, and the isolated Bro1-like domains of Alix, HD-PTP and Rhophilin can bind human immunodeficiency virus type 1 (HIV-1) nucleocapsid. Alix, HD-PTP, Bro1, and Rim20 also have a V-shaped (V) domain, which in the case of Alix, has been shown to be a dimerization domain and to contain a binding site for the retroviral late assembly (L) domain YPXnL motif, which is partially conserved in this superfamily. Alix, HD-PTP and Bro1 also have a proline-rich region (PRR); the Alix PRR binds multiple partners. Rhophilin-1, and -2, in addition to this Bro1-like domain, have an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. HD-PTP is encoded by the PTPN23 gene, a tumor suppressor gene candidate frequently absent in human kidney, breast, lung, and cervical tumors. This protein has a C-terminal, catalytically inactive tyrosine phosphatase domain. Length = 345

>gnl|CDD|217365 pfam03097, BRO1, BRO1-like domain

 Score =  194 bits (496), Expect = 3e-58
 Identities = 89/413 (21%), Positives = 143/413 (34%), Gaps = 72/413 (17%)

Query: 26  VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHG 85
           +    L+  K VD S+ L D +         +L         ++        R+ A    
Sbjct: 1   LLPLPLKETKEVDLSKPLKDYILSTY-GEDPSLF--------EDDLAELNKLRQDAVNVP 51

Query: 86  GSTLADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLH 145
           GS      + L  Y   L  L K     Q  V+F W +  D       S+  +E  SVL 
Sbjct: 52  GSPDESGLELLYRYYGQLEALEKRFPDDQLGVEFTWYDAFDTGSPVTQSSLAFEKASVLF 111

Query: 146 LMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPE 205
            +A L    A             Q + ++E  +A+ D F KAAG  +         +   
Sbjct: 112 NLAALYSQIAAS-----------QNRDTDEGLKAACDYFQKAAGAFE--------YLKEN 152

Query: 206 LRRELPVDLAEGDLRALCLQALGQGVDIQLGMAI-DSTKATLAVKRRLACEMVKYWQQAQ 264
                 VDL+   L+ L    L Q  +     AI D  K +L  K  LA ++   +++A 
Sbjct: 153 FLHSPSVDLSPETLKFLESLMLAQAQECFFEKAILDGKKDSLIAK--LAAQVSDLYEEAL 210

Query: 265 DNIMNLPLANGWGEKHKLFVKWK--YFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAVAA 322
           + +   P+  G  ++    V+ K  YF+A         +   +  L L  +K +G A+A 
Sbjct: 211 EALQESPVKTGIPKEWIKHVQLKQHYFKA---------LAHYYHALALEEKKKYGEAIAR 261

Query: 323 LQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEK 382
           LQ A    KE+ K         PLS +  L   +K L ++I +      + N  +Y  E 
Sbjct: 262 LQKALSALKEALK-------LAPLSSSSELLEDLKGLKDRIKEKLKEAEKDNDFIYHEEV 314

Query: 383 IME---------------------TAPTLPDFALALKPDEFQLPPVHPSWTDE 414
             E                      +   PD    L P           +++ 
Sbjct: 315 PDEVSLPPIKPAPLVKPIPPNELTESVKGPDLFKKLVPIAVHEALSA--YSER 365

This domain is found in a number proteins including Rhophilin and BRO1. It is known to have a role in endosomal targeting. ESCRT-III subunit Snf7 binds to a conserved hydrophobic patch in the BRO1 domain that is required for protein complex formation and for the protein-sorting function of BRO1. Length = 374

>gnl|CDD|214990 smart01041, BRO1, BRO1-like domain

 Score =  147 bits (373), Expect = 3e-40
 Identities = 84/386 (21%), Positives = 139/386 (36%), Gaps = 45/386 (11%)

Query: 26  VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHG 85
           +    L+  K VDFS+ L D + +   E  S+           E   + R R+  A +  
Sbjct: 1   LIPLPLKETKEVDFSKPLKDYIKETYSEDSSSYE--------DEIAELNRLRQ--AARTP 50

Query: 86  GSTLADLHQALEDYLPVLLGLVK--DGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSV 143
               + L   L+ Y   L  L       + Q K+ F W +  D    +  S+  +E  SV
Sbjct: 51  SRDESGLELLLK-YYGQLEALELRFPPPEGQLKLSFTWYDSLDTGVPSTQSSLAFEKASV 109

Query: 144 LHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMS 203
           L  +  L    A             Q + +EE  + +   F +AAG  +    + L    
Sbjct: 110 LFNLGALYSQIAA-----------EQNRDTEEGLKEACKAFQQAAGVFNYLKENFL---- 154

Query: 204 PELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAI-DSTKATLAVKRRLACEMVKYWQQ 262
             L  E  VDL+   L AL    L Q  +     AI D  K   ++  +LA +  +Y+++
Sbjct: 155 HALSTEPSVDLSPETLSALSSLMLAQAQECFFEKAILDGMKNKDSLIAKLAAQAAEYYEE 214

Query: 263 AQDNIMNL-PLANGWGEKHKLFVKWK--YFEAKLLNILIVLVDQTWFLLLLPSEKFHGMA 319
           A   +    P+     +     V+ K  +F+A         +   +  L L     +G A
Sbjct: 215 ALKALQTSEPVKGYIPKSWIKLVQVKAHHFKA---------LAHYYQALDLEEANKYGEA 265

Query: 320 VAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYS 379
           +A LQ A E  KE+KK          L +   L   +  L + + +      + N  +Y 
Sbjct: 266 IARLQEALERLKEAKKHLRCK----KLGKADKLQEDLSGLKDVVEEKLKEAEKDNDFIYH 321

Query: 380 YEKIMETAPTLPDFALALKPDEFQLP 405
                  +      A  +KP  F   
Sbjct: 322 ERVPDIVSLPPIKKAPLVKPPPFSEV 347

This domain is found in a number proteins including Rhophilin and BRO1. It is known to have a role in endosomal targeting. ESCRT-III subunit Snf7 binds to a conserved hydrophobic patch in the BRO1 domain that is required for protein complex formation and for the protein-sorting function of BRO1. Length = 381

>gnl|CDD|185768 cd09245, BRO1_UmRIM23-like, Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains

 Score = 41.2 bits (97), Expect = 8e-04
 Identities = 47/210 (22%), Positives = 73/210 (34%), Gaps = 24/210 (11%)

Query: 36  PVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQA 95
            + FS     +   ++    +  R    + AA     +   +R        + L  + +A
Sbjct: 11  SISFSDFFNSDSYPSLPLNATTARAV--LRAA-----LKAHKRTPPGSQASNLLTVV-KA 62

Query: 96  LEDYLPVLLGLVKDGSQ----LQYKVQFVW-----VNQEDEAEETAISNAWYEVLSVLHL 146
           LE+YLP LL +    S     L+ +  F W          E+    +    YE+  VL  
Sbjct: 63  LEEYLPYLLAIDACLSHDELILKSEPTFEWRTTLSSTSGRESPRLPLPGLHYELAFVLLT 122

Query: 147 MAMLSLSQAN-----LLLLPRTSADGY-QPKVSEESRRASVDIFLKAAGYLDCAVRHVLP 200
            A    + A      L       +      K  +E  +A+  +  KAAG  D     VLP
Sbjct: 123 YAYALSNLARSILAPLGAYETDRSISDASRKQRDERLKAATKLLCKAAGIFDYLATRVLP 182

Query: 201 QMSPELRRE-LPVDLAEGDLRALCLQALGQ 229
           Q          P DL+   L AL   AL +
Sbjct: 183 QWESNRGGAPPPPDLSPEVLSALSSLALAE 212

This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Intermediates in the Rim101 pathway may play roles in the pathogenesis of fungal corneal infection during Candida albicans keratitis. This family lacks the V-shaped (V) domain found in many members of the BRO1_Alix_like superfamily. Length = 413

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	431
cd09243	353	BRO1_Brox_like Protein-interacting Bro1-like domai	100.0
cd09246	353	BRO1_Alix_like_1 Protein-interacting, N-terminal,	100.0
cd09240	346	BRO1_Alix Protein-interacting, N-terminal, Bro1-li	100.0
cd09239	361	BRO1_HD-PTP_like Protein-interacting, N-terminal,	100.0
cd09241	355	BRO1_ScRim20-like Protein-interacting, N-terminal,	100.0
cd09242	348	BRO1_ScBro1_like Protein-interacting, N-terminal,	100.0
cd09034	345	BRO1_Alix_like Protein-interacting Bro1-like domai	100.0
cd09244	350	BRO1_Rhophilin Protein-interacting Bro1-like domai	100.0
PF03097	377	BRO1: BRO1-like domain; InterPro: IPR004328 The BR	100.0
cd09248	384	BRO1_Rhophilin_1 Protein-interacting Bro1-like dom	100.0
cd09247	346	BRO1_Alix_like_2 Protein-interacting Bro1-like dom	100.0
cd09245	413	BRO1_UmRIM23-like Protein-interacting, Bro1-like d	100.0
cd09249	385	BRO1_Rhophilin_2 Protein-interacting Bro1-like dom	100.0
KOG2220	714	consensus Predicted signal transduction protein [G	100.0
KOG2220	714	consensus Predicted signal transduction protein [G	97.87

>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins

Probab=100.00  E-value=9.9e-68  Score=532.19  Aligned_cols=331  Identities=21%  Similarity=0.370  Sum_probs=278.9

Q ss_pred             CCCCccccc--chHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhcccc
Q 014089           31 LRIPKPVDF--SQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVK  108 (431)
Q Consensus        31 lk~~~~vd~--~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~l~~  108 (431)
                      ||-|..|+|  .....+--++++|++|+..|++++++.               .++ .++.++++++|++||++|.||+.
T Consensus         7 ~k~t~~~~f~~~~~~~~~~~~~~~~~~~~~r~~l~~~~---------------~~~-~~~~~~~~~a~~~Yl~ll~g~~~   70 (353)
T cd09243           7 LKATAPVKFDLKGVATTPAASKLCSDLRTARARLLELL---------------SDP-SNDVDTVKTAFNAYLSLLQGFIL   70 (353)
T ss_pred             cccccccccccccccCChhHHHHHHHHHHHHHHHHHHh---------------cCC-CCCHHHHHHHHHHHHHHHHHHhh
Confidence            787776555  556777777899999999999999998               777 88999999999999999999986


Q ss_pred             ------CCCCcccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHH
Q 014089          109 ------DGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVD  182 (431)
Q Consensus       109 ------~~~~~~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~  182 (431)
                            .+++++..|.|+|+|+|+++.+++++|++||++||||||||+ |+++|+.++..      ++ .++||+|+||+
T Consensus        71 ~~d~~~~~~~l~~~v~F~W~dsl~~~~~~~q~sl~fEk~sVLfNigal-~s~~As~~~~~------~~-~s~e~~K~A~~  142 (353)
T cd09243          71 ALDGKTQESKLRYLINFKWTDSLLGNEPSVQQDAIFELASMLFNVALW-YTKHASKLAGK------ED-ITEDEAKDVHK  142 (353)
T ss_pred             cccccCCccccceeeeEEEECCCCCCCceeeccHHHHHHHHHHHHHHH-HHHHHHHHhcc------CC-CCcHHHHHHHH
Confidence                  568889999999999997778999999999999999999955 68887777644      23 35589999999


Q ss_pred             HHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHH
Q 014089          183 IFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQ  262 (431)
Q Consensus       183 ~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q~s~~Y~~  262 (431)
                      +||+|||||+||+++++|.++..  ..+|+||++++|++|+.|||||||||+|+||++ ++++++||||||+|++++|++
T Consensus       143 ~fq~AAG~F~~l~e~~l~~l~~~--~~p~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~-~k~k~sliaKLA~q~a~~Y~~  219 (353)
T cd09243         143 SLRTAAGIFQFVKENYIPKLIEP--AEKGSDLDPRVLEAYINQCTAEAQEVTVARAIE-LKHNAGLISALAYETAKLFQK  219 (353)
T ss_pred             HHHHHHHHHHHHHHhhccccccc--CCCccccCHHHHHHHHHHHHHHHHHHHHHHHHH-cccchHHHHHHHHHHHHHHHH
Confidence            99999999999999999887642  346789999999999999999999999999999 789999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 014089          263 AQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAVAALQAADEYFKESKKACEA  339 (431)
Q Consensus       263 A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~~~  339 (431)
                      |.+.+++...        .++.+| +++++|+..|    .|.+ ||| +.+.++++||++|++|+.|.++++++.+.+++
T Consensus       220 A~~~l~~~~~--------~i~~~W~~~v~~K~~~f----~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~a~~~~k~  287 (353)
T cd09243         220 ADDSLSSLDP--------EYSGKWRKYLQLKSVFY----LAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNKAEALCKE  287 (353)
T ss_pred             HHHHHHcCCc--------cccHHHHHHHHHHHHHH----HHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999986432        244556 5555555333    1111 777 88899999999999999999999999999988


Q ss_pred             cccCC-C-CCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCCCCCCCC---ccccccccccc
Q 014089          340 FNVAP-P-LSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTLP---DFALALKPDEF  402 (431)
Q Consensus       340 ~~~~~-p-~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~~lp~l~---~~~l~vkp~~~  402 (431)
                      |.... + ....++....++.+.+.|++.+++++||||||| ||+||+++|.++   .+++ |+|+||
T Consensus       288 y~~~~~~~~~~~~~~~~~~~~l~~~I~~~L~~aeKDNdfIY-h~~VP~e~p~~e~k~~~g~-~~~~~~  353 (353)
T cd09243         288 YAKTKGPGTTAKPDQHLFFRKLGPLVKRTLEKCERENGFIY-HQKVPDEVPQLELKATYGL-VSPEEF  353 (353)
T ss_pred             hhhccCccccccchhhHHHHHHHHHHHHHHHHHhhhhceec-cccCCCCCCccccccccCc-cCCCCC
Confidence            87653 3 222333344577888899999999999999999 999999998888   4569 999876

This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (

>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily

Probab=100.00  E-value=2.7e-66  Score=525.02  Aligned_cols=333  Identities=19%  Similarity=0.228  Sum_probs=270.7

Q ss_pred             EecCCCCCCcccccchHHhhHHHHHHHH-HHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 014089           26 VYVPGLRIPKPVDFSQSLGDNLSKNMVE-RLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLL  104 (431)
Q Consensus        26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~-~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~  104 (431)
                      +.|| +|+|.+|||.+||++||+++|.+ +.+.+++++..+. ++|+.++.+.    +++     +..++.|.+||.+|.
T Consensus         2 l~ip-~K~t~~vd~~~~L~~~I~~~y~~~~~~~~~~~l~~l~-~LR~~~~~~~----~~~-----~~~~~~l~~Yy~~L~   70 (353)
T cd09246           2 LSIH-RKKTETVDLVSPLRAYISETYSEREAQDAEDDLAELQ-QLRSEVRTLQ----EKH-----AASRELLLRYYRALC   70 (353)
T ss_pred             CCCC-CCcccccchHhHHHHHHHHHcCCcCHHHHHHHHHHHH-HHHHHhhcCC----CCC-----hhHHHHHHHHHHHHH
Confidence            5688 99999999999999999999852 2344444443332 2222222222    121     244678999999999


Q ss_pred             ccccCCCCc----ccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHH
Q 014089          105 GLVKDGSQL----QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS  180 (431)
Q Consensus       105 ~l~~~~~~~----~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A  180 (431)
                      .+..+++..    +.+|.|+|+|+|+++.+++++|+.||++|||||+||+ ||++|.    .      +++.++||+|+|
T Consensus        71 ~l~~rfp~~~~~~~~~v~F~W~d~~~~~~~~~~~sl~fEka~vlfNiaal-~s~~a~----~------~~~~~~~glK~A  139 (353)
T cd09246          71 AVESRFPISEESGHARVSFSWYDAFRPHRKATQANVHFEKAAVLFNLGAL-SSQLGL----Q------QDRTTAEGIKQA  139 (353)
T ss_pred             HHHccCCCCcccccccceeEeeccCCCCcceeecchHHHHHHHHHHHHHH-HHHHHH----h------cCCCChHHHHHH
Confidence            987665322    3589999999999878999999999999999999955 698873    2      467889999999


Q ss_pred             HHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHHHHHHH
Q 014089          181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYW  260 (431)
Q Consensus       181 ~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q~s~~Y  260 (431)
                      |++||+|||||+||++++++.+..    .+++||++++|.+|..+||||||||+|+||+. ++++++||||||.|++++|
T Consensus       140 ~~~fq~AAG~F~~l~e~~~~~~~~----~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Ka~~-~~~k~sliAKLa~qv~~~Y  214 (353)
T cd09246         140 CHAFQAAAGAFAHLRDKVSGKTGG----FRTPDLTAECLGMLESLMLAQAQECFYEKAVA-DGKSPAVCSKLAKQARSYY  214 (353)
T ss_pred             HHHHHHHHHHHHHHHHhccccccC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCccHHHHHHHHHHHHH
Confidence            999999999999999999876543    34679999999999999999999999999999 7889999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcCccchhHHHHHHHHHHHHHHHHHHHHH
Q 014089          261 QQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLPSEKFHGMAVAALQAADEYFKESKKAC  337 (431)
Q Consensus       261 ~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~  337 (431)
                      ++|.+.+++.....      .+...| +++++|+..|    .+.++||  ..+.++++||++|+||+.|.+.++++.+..
T Consensus       215 ~~a~~~l~~~~~~~------~~~~~W~~~~~~K~~~f----~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~k~~  284 (353)
T cd09246         215 EEALEALDSPPLKG------HFDKSWVAHVQLKAAYF----RAEALYRAAKDLHEKEDIGEEIARLRAASDALAEARKQA  284 (353)
T ss_pred             HHHHHHHhcccccc------cccHHHHHHHHHHHHHH----HHHHHHHHHHHhHHhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            99999998654311      356789 8999998666    4444555  788899999999999999999999998875


Q ss_pred             hhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccCC
Q 014089          338 EAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQL  404 (431)
Q Consensus       338 ~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~l  404 (431)
                      +...       .+.+.+.++.+.+.|++.+++++||||||| ||+||+  +||+|++..| |||+|++-
T Consensus       285 ~~~~-------~~~~~~~~~~l~~~v~~~l~~aekdNd~IY-~~~VP~~~~Lp~i~~~~~-vk~i~~~~  344 (353)
T cd09246         285 KGVN-------GDELIEAVSELEQVINELLERAEKENDCVY-LDRVPAPSDLPPLGAASM-VKPAAPPA  344 (353)
T ss_pred             hcCC-------cHHHHHHHHHHHHHHHHHHHHHHhhhcccc-cCCCCCcccCCCCCCccc-ccCCCCcc
Confidence            4221       114667788999999999999999999999 999997  9999999999 99998554

This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro

>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains

Probab=100.00  E-value=4.3e-66  Score=522.38  Aligned_cols=328  Identities=22%  Similarity=0.269  Sum_probs=263.6

Q ss_pred             EEecCCCCCCcccccchHHhhHHHHHHH--HHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHH
Q 014089           25 SVYVPGLRIPKPVDFSQSLGDNLSKNMV--ERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPV  102 (431)
Q Consensus        25 ~~~~p~lk~~~~vd~~~~l~~~I~~~~~--~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~  102 (431)
                      .+.|| +|+|.+|||.+||++||.++|.  ++.+.++++|-.+. ++|+....+.    .+   .+ +..++.|.+||.+
T Consensus         3 ~l~ip-lK~t~~vd~~~~l~~~I~~~y~~~~~~~~~~~~l~~l~-~lR~~~~~~~----~~---~~-~~~~~~l~~Yy~q   72 (346)
T cd09240           3 FISVP-LKKSSEVDLVKPLEKFIKNTYSSGEEQADYKEAIKELN-KLRNNAVCRP----LD---KH-ESSLELLLRYYDQ   72 (346)
T ss_pred             eeecc-CcCCCcCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HHHHHhhcCC----CC---cc-hhHHHHHHHHHHH
Confidence            46789 9999999999999999999997  53444443333222 1111110000    11   11 2345679999999


Q ss_pred             HhccccCCCCc--ccceeEeeeccCCCC------ccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCCh
Q 014089          103 LLGLVKDGSQL--QYKVQFVWVNQEDEA------EETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSE  174 (431)
Q Consensus       103 L~~l~~~~~~~--~~~v~F~W~ds~~~~------~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~  174 (431)
                      |..+..+.+..  +.+|.|+|+|+|+.+      .+++++|+.||++||||||||+ +|++|+    .      +++.++
T Consensus        73 L~~l~~rfp~~~~~~~v~F~W~d~~~~~~~~~~~~~~~~~~l~fEka~vlfNiaal-~s~la~----~------~~~~~~  141 (346)
T cd09240          73 LCAIEPKFPFSESQIQVTFTWKDAFDKGSLFGGSKKLALSSLGYEKVCVLFNIAAL-QSQIAA----E------QNLDTD  141 (346)
T ss_pred             HHHHHhcCCCCcccccceeeeecccccccccCCCcccccccHHHHHHHHHHHHHHH-HHHHHH----H------cCCCCh
Confidence            99886554322  368999999999742      4678999999999999999955 688873    1      467889


Q ss_pred             HhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHH
Q 014089          175 ESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLAC  254 (431)
Q Consensus       175 dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~  254 (431)
                      ||+|+||++||+|||||+||++++++.+..    .+++||++++|.+|..+||||||||||+||+. ++++++||||||.
T Consensus       142 eglK~A~~~fq~AAG~F~~l~e~~~~~~~~----~~s~Dl~~~~l~~l~~lmLAQAQE~~~~Kai~-~~~k~~liAKLa~  216 (346)
T cd09240         142 EGLKLAAKLFQQAAGIFNHLKETVLSALQQ----EPTPDLSPDTLSALSALMLAQAQEVFYLKATR-DKMKDAIIAKLAA  216 (346)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccccccC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-ccCchhHHHHHHH
Confidence            999999999999999999999999877643    45679999999999999999999999999999 7889999999999


Q ss_pred             HHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcCccchhHHHHHHHHHHHHHHH
Q 014089          255 EMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLPSEKFHGMAVAALQAADEYFK  331 (431)
Q Consensus       255 q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~~~~k~GeaIa~L~~A~~~l~  331 (431)
                      |++++|++|.+.+++...      +..++.+| .++++|+..|    .+.++||  +.+.++++||++|+||+.|.+.++
T Consensus       217 qv~~~Y~~a~~~l~~~~~------~~~~~~~W~~~~~~K~~~f----~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~  286 (346)
T cd09240         217 QAADYYGDAFKQCQREDV------RSLLPKDWIPVLAGKQAYF----HALAEYHQSLVAKAQKKFGEEIARLQHALELIK  286 (346)
T ss_pred             HHHHHHHHHHHHHhcchh------ccccCHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHH
Confidence            999999999999987654      12467789 8999998666    4444555  778999999999999999999999


Q ss_pred             HHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccC
Q 014089          332 ESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQ  403 (431)
Q Consensus       332 ~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~  403 (431)
                      ++.+.++.+.             .++.+.++|++.+++++||||||| ||+||+  +||+|++..| |||+|++
T Consensus       287 ~a~~~~~~~~-------------~~~~l~~~i~~~l~~aekDNd~IY-~e~VP~~~~L~~i~~~~~-vk~~p~~  345 (346)
T cd09240         287 TAQSRAGEYV-------------DVKDFAAKISRALTAAKKDNDFIY-HDRVPDVKSLPPIGKAAL-AKPTPVN  345 (346)
T ss_pred             HHHHHhcchh-------------HHHHHHHHHHHHHHHHhhccCeEe-ccCCCCchhccCCcCccc-ccCCCCC
Confidence            9988654221             267788899999999999999999 999996  8999999999 8999864

This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f

>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains

Probab=100.00  E-value=7.5e-66  Score=522.16  Aligned_cols=334  Identities=18%  Similarity=0.162  Sum_probs=267.3

Q ss_pred             EecCCCCCCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014089           26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG  105 (431)
Q Consensus        26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~  105 (431)
                      +.+| +|+|.+|||.+||++||.++|.++.+.+.+++-.+. ++|+....+         ..+ ...++.|.+||.+|..
T Consensus         9 l~ip-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~-~LR~~~~~~---------~~~-~~~~~~l~~Yy~qL~~   76 (361)
T cd09239           9 LWLQ-LKSSGEFTFQPALKKYILENYGEDPELYSEELKSLE-QLRQEAVNP---------PRD-FEGCSVLKRYYGQLHL   76 (361)
T ss_pred             cccC-CCCCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHH-HHHHHhccC---------CCC-hHHHHHHHHHHHHHHH
Confidence            4566 999999999999999999999665444444443322 222221111         112 2345679999999988


Q ss_pred             cccCCCCc---ccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHH
Q 014089          106 LVKDGSQL---QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVD  182 (431)
Q Consensus       106 l~~~~~~~---~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~  182 (431)
                      +..+++..   ..+|.|+|+|+|++ .+++++|+.||++||||||||+ |||+|+    .      +++.++||+|+||+
T Consensus        77 l~~rfp~~~~~~~~v~F~W~d~~~~-~~~~~~~l~fEka~vlfNigal-~sq~a~----~------~~r~~~~glK~A~~  144 (361)
T cd09239          77 LQSRFPMGAGQEAAVPFTWTDIFSG-SEVTHEDIKFEEASVLYNIGAL-HSQLGA----S------DKRDSEEGMKVACT  144 (361)
T ss_pred             HHhcCCCCccccccceeeeecccCC-CchhhhhHHHHHHHHHHHHHHH-HHHHHH----h------ccCCChHHHHHHHH
Confidence            76554322   24799999999984 7889999999999999999966 698872    2      46788999999999


Q ss_pred             HHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHH
Q 014089          183 IFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQ  262 (431)
Q Consensus       183 ~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q~s~~Y~~  262 (431)
                      +||+|||||+||++++++.++       ++||++++|.+|..+||||||||||+||+. ++++++||||||.|++++|++
T Consensus       145 ~fq~AAG~F~~l~e~~~~~~~-------~~Dl~~~~l~~L~~lmLAQAQEc~~~Kai~-d~~k~sliAKLA~q~~~~Y~~  216 (361)
T cd09239         145 HFQCAAWAFAYLREHYPQVYG-------AVDMSSQLLSFNYSLMLAQAQECLLEKSLL-DNRKSHITAKVSAQVVEYYKE  216 (361)
T ss_pred             HHHHHHHHHHHHHHhccCCCC-------cccCCHHHHHHHHHHHHHHHHHHHHHHHHH-hCCchHHHHHHHHHHHHHHHH
Confidence            999999999999999876542       259999999999999999999999999999 788999999999999999999


Q ss_pred             HHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 014089          263 AQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLPSEKFHGMAVAALQAADEYFKESKKACEA  339 (431)
Q Consensus       263 A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~~~  339 (431)
                      |.+.+++......+ -...++.+| +++++|+..|    .+.++||  ..+.++++||++|+||+.|...++++.+.++.
T Consensus       217 a~~~l~~~~~~~~~-~~~~i~~~W~~~v~~K~~~f----~A~A~y~~a~~~~~~~k~Ge~Ia~L~~A~~~l~~a~~~~~~  291 (361)
T cd09239         217 ALRALENWESNSKI-ILGKIQKEWRKLVQMKIAYY----ASIAHLHMGKQSEEQQKMGERVAYYQLANDKLEEAIKNAKG  291 (361)
T ss_pred             HHHHHhcccccccc-cccccCHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999864321000 011367789 9999998766    4444555  77889999999999999999999999988753


Q ss_pred             cccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccC--CCCCCCCcccccccccccCC
Q 014089          340 FNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIM--ETAPTLPDFALALKPDEFQL  404 (431)
Q Consensus       340 ~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP--~~lp~l~~~~l~vkp~~~~l  404 (431)
                      ...      ...+.+.++.+.++|++.+++++||||||| ||+||  ++||+|+++.| |||+||+-
T Consensus       292 ~~~------~~~~~~~~~~l~~~i~~~l~~aekDNd~IY-he~VP~~~~L~~i~~~~~-vk~~p~~~  350 (361)
T cd09239         292 QPD------TVNLQEALSFTMDVIGGKRNSAKKENDFIY-HEAVPKLDTLQAVKGANL-VKGIPFSP  350 (361)
T ss_pred             CCc------chhHHHHHHHHHHHHHHHHHHHhcccCcee-ecCCCChhhcCCCcCccc-cccCCCCc
Confidence            211      112667788899999999999999999999 99999  58999999999 99998884

This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l

>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins

Probab=100.00  E-value=3.5e-65  Score=517.58  Aligned_cols=324  Identities=19%  Similarity=0.268  Sum_probs=267.9

Q ss_pred             EEecCCCCCCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHh
Q 014089           25 SVYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLL  104 (431)
Q Consensus        25 ~~~~p~lk~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~  104 (431)
                      .+.|| +|+|.+|||.+||++||.++|.++-+.++++|..+. ++|+.++++     .   . + ...++.|.+||.+|.
T Consensus         2 ~l~ip-~K~t~~vd~~~~l~~~I~~~y~~~~~~~~~dl~~l~-~lR~~~~~~-----~---~-~-~~~~~~l~~Yy~~L~   69 (355)
T cd09241           2 LLSIP-FKRTLPVDLKDALRNYISNHYFQTPSSFEDDLAEID-KLRNDAINP-----E---P-S-VNGLSLLKEYYAQLV   69 (355)
T ss_pred             cCccC-CCcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHH-HHHHHhhCC-----C---C-C-hhHHHHHHHHHHHHH
Confidence            36789 999999999999999999999665555555543332 222222221     1   1 1 234678999999999


Q ss_pred             ccccCCCCcccceeEeeeccCCCC--ccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHH
Q 014089          105 GLVKDGSQLQYKVQFVWVNQEDEA--EETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVD  182 (431)
Q Consensus       105 ~l~~~~~~~~~~v~F~W~ds~~~~--~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~  182 (431)
                      .+..+.+  ..+|.|+|+|+|+++  .+++++|++||++||||||||+ ||+.|..          +++.+++|+|+||+
T Consensus        70 ~l~~rfp--~~~i~F~W~d~~~~~~~~~~~~~~l~fEka~VLfNigal-~sq~a~~----------~~~~~~~glK~A~~  136 (355)
T cd09241          70 VLSKKFP--DDQLEFTWYPTLGYKSSGPVSLSSLKFERANILYNLGAL-YSQLALS----------ENRYTDEGLKRACS  136 (355)
T ss_pred             HHHhcCC--CcCCceeeecccCCCCCCceeeccHHHHHHHHHHHHHHH-HHHHHHH----------cCCCChHHHHHHHH
Confidence            9876654  678999999999874  6899999999999999999966 6887721          36778999999999


Q ss_pred             HHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHH
Q 014089          183 IFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQ  262 (431)
Q Consensus       183 ~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q~s~~Y~~  262 (431)
                      +||+|||||+||++++++.+      .++.||++++|.+|..+||||||||+|+||+. +++++++|||||.|++.+|++
T Consensus       137 ~fq~AAG~F~~l~~~~~~~~------~~s~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~-~~~k~sliAKLa~qv~~~Y~~  209 (355)
T cd09241         137 YFQASAGCFEYILQHLLPTL------SPPPDLDENTLKALESLMLAQAQECFWQKAIS-DGTKDSLIAKLAAQVSDYYQE  209 (355)
T ss_pred             HHHHHHHHHHHHHHhccccc------CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcchHHHHHHHHHHHHHHH
Confidence            99999999999999998764      24579999999999999999999999999999 677899999999999999999


Q ss_pred             HHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcCccchhHHHHHHHHHHHHHHHHHHHHHhh
Q 014089          263 AQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLPSEKFHGMAVAALQAADEYFKESKKACEA  339 (431)
Q Consensus       263 A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~~~  339 (431)
                      |.+.++..+.         +...| .++++|+..|    .+.+|||  ..+.++++||++|+||+.|.+.++++.+.++.
T Consensus       210 a~~~l~~~~~---------i~~~W~~~v~~K~~~f----~A~A~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~a~~~~~~  276 (355)
T cd09241         210 ALKYANKSDL---------IRSDWINHLKVKKHHF----KAAAHYRMALVALEKSKYGEEVARLRVALAACKEALKEARY  276 (355)
T ss_pred             HHHHHhcCCc---------ccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            9999985543         56789 8888888665    3334555  77888999999999999999999999988663


Q ss_pred             cccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccC
Q 014089          340 FNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQ  403 (431)
Q Consensus       340 ~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~  403 (431)
                      .        .+.+.+.++.+.+.|++.+++++||||||| ||+||+  +||+|++..| |||++++
T Consensus       277 ~--------~~~~~~~~~~l~~~i~~~l~~aekdNd~IY-~e~VP~~~~L~~i~~~~~-vk~~~~~  332 (355)
T cd09241         277 G--------NKAVLEDLQGLKDIVKESLKRAERDNDLIY-LQPVPPASELPPIKPASM-VKAIVPP  332 (355)
T ss_pred             c--------chhHHHHHHHHHHHHHHHHHHHhhccCeeC-CcCCCCcccCCCCCCccc-ccccCch
Confidence            3        223556678889999999999999999999 999996  9999999999 9999764

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp

>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins

Probab=100.00  E-value=9.8e-65  Score=512.89  Aligned_cols=335  Identities=18%  Similarity=0.190  Sum_probs=265.7

Q ss_pred             EecCCCCCCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014089           26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG  105 (431)
Q Consensus        26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~  105 (431)
                      +.+| +|+|.+|||.+||++||.++|.++-..+++++-.+. ++|+.++.+.        . + +..++.+.+||.+|..
T Consensus         2 l~lp-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~~~l~~l~-~lR~~~~~~~--------~-~-~~~~~~l~~Yy~qL~~   69 (348)
T cd09242           2 ISLP-LKDTEEVDWKKPLSSYLKRSYGSSTFYYEEEIAEFD-RLRQDANGVL--------A-D-ETGRDLLYKYYGQLEL   69 (348)
T ss_pred             CCCC-CCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhcCCC--------C-C-HHHHHHHHHHHHHHHH
Confidence            5678 999999999999999999998554444444433332 2222211111        1 2 3446679999999988


Q ss_pred             cccCCCCc--ccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHH
Q 014089          106 LVKDGSQL--QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDI  183 (431)
Q Consensus       106 l~~~~~~~--~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~  183 (431)
                      +..+++..  ..+|.|+|+|+|+++.+++++|++||++|||||+||+ ||++|..          +++.+++|+|.||++
T Consensus        70 l~~rfp~~~~~~~v~F~W~d~~~~~~~~~~~sl~fEka~VLfNiaal-~s~~A~~----------~~~~~~~~~K~A~~~  138 (348)
T cd09242          70 LELRFPFNNKELKVDFTWYDAFYKSKKVKQHSLAFEKASVLFNIGAL-LSQLAAE----------KYREDEDDLKEAITN  138 (348)
T ss_pred             HHhhcCCCCccccceeeeeecCCCCCceeecchHHHHHHHHHHHHHH-HHHHHHH----------hccCChHHHHHHHHH
Confidence            75554322  3689999999999668999999999999999999965 6888732          245689999999999


Q ss_pred             HHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcc---cchHHHHHHHHHHHHHH
Q 014089          184 FLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTK---ATLAVKRRLACEMVKYW  260 (431)
Q Consensus       184 fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k---~k~slIAKLA~q~s~~Y  260 (431)
                      ||+|||||+||++++++.        ++.||++++|.+|..+||||||||+|+||+. ++   ++++||||||+|++++|
T Consensus       139 fq~AAG~f~~l~e~~~~~--------ps~Dl~~~~l~~L~~lmLAQAQE~~~~Kai~-~~~~~~k~sliaKLa~~~~~~Y  209 (348)
T cd09242         139 LQQAAGCFQYINENFLHA--------PSVDLQQENVKFLVKLMLAQAQEIFLLKLIN-GDDAQKKASLISKLASATANLY  209 (348)
T ss_pred             HHHHHHHHHHHHHhcCCC--------CCccCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccchHHHHHHHHHHHHHH
Confidence            999999999999998653        3469999999999999999999999999999 55   89999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHHHHHHHHHHHHHHHHHHH
Q 014089          261 QQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAVAALQAADEYFKESKKAC  337 (431)
Q Consensus       261 ~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~  337 (431)
                      ++|.+.+++.....    +..++..| .++++|+..|    .+.+ ||+ .++.++++||++|+||+.|.+.++++.+.+
T Consensus       210 ~~a~~~l~~~~~~~----~~~~~~~W~~~~~~K~~~f----~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~  281 (348)
T cd09242         210 ESCVEFLKEIQEKG----ISYGDPKWISLVQCKAHYY----KSLAAYYHALALEAAGKYGEAIAYLTQAESILKEANPQK  281 (348)
T ss_pred             HHHHHHHhcccccc----ccccCHHHHHHHHHHHHHH----HHHHHHHHHHHhHHhccHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999998754310    01256689 8888887555    2333 555 888999999999999999999999999876


Q ss_pred             hhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccC
Q 014089          338 EAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQ  403 (431)
Q Consensus       338 ~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~  403 (431)
                      +.+..+. ....+.+.+.++.+.+.|++.+++++||||||| |++||+  +||+|++..| |||+|++
T Consensus       282 ~~~~~~~-~~~~~~~~~~~~~~~~~v~~~l~~aekDNd~IY-~~~VP~~~~L~~i~~~~~-vk~~p~~  346 (348)
T cd09242         282 LSLKASA-GDAAYALNDDFKGQKDTVEEKLKELEKDNDFIY-HDIVPSEVTLPSIKPLDA-AKPIPIE  346 (348)
T ss_pred             hcCCCcc-ccchhHHHHHHHHHHHHHHHHHHHHhcccCeec-cCCCCCccccCCCCcccc-CCCCCCc
Confidence            5443211 111234777899999999999999999999999 999996  8999999999 8998754

This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the

>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains

Probab=100.00  E-value=1.8e-59  Score=474.17  Aligned_cols=324  Identities=35%  Similarity=0.516  Sum_probs=266.7

Q ss_pred             EecCCCCCCcccccchHHhhHHHHHHH-----------HHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHH
Q 014089           26 VYVPGLRIPKPVDFSQSLGDNLSKNMV-----------ERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQ   94 (431)
Q Consensus        26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~-----------~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~   94 (431)
                      +.+| ||+|.+|||..+|+++|.++|.           ++++++|++++...               .++  ++.+.+++
T Consensus         2 i~~p-lk~t~~vd~~~~l~~~i~~~~~~~~~~~~~~~l~~~~~lR~~~~~~~---------------~~~--~~~~~~~~   63 (345)
T cd09034           2 IGLP-LKKTKEVDVKVPLSKFIPKNYGELEATAVEDLIEKLSKLRNNIVTEQ---------------NND--TTCENLLE   63 (345)
T ss_pred             CCCC-CCCCceeeechhhHHHhhHhhCcccchhhHHHHHHHHHHHHHHHhhc---------------cCC--cchHHHHH
Confidence            4577 9999999999999999999874           46777777766554               222  14567889


Q ss_pred             HHHHHHHHHhccccCCC--CcccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 014089           95 ALEDYLPVLLGLVKDGS--QLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKV  172 (431)
Q Consensus        95 ~l~~Yl~~L~~l~~~~~--~~~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~  172 (431)
                      +|.+||++|.+|..+.+  ..+.+|.|+|+|+|+.+.++.. |++||++|||||+|++ |++.|..          +++.
T Consensus        64 ~l~~Y~~~L~~l~~~~~~~~~~~~i~F~W~d~~~~~~~~~~-~l~fE~~~vLfn~aa~-~s~~a~~----------~~~~  131 (345)
T cd09034          64 ALKEYLPYLLGLEKKLPFQKLRDNVEFTWTDSFDTKKESAT-SLRYELLSILFNLAAL-ASQLANE----------KLIT  131 (345)
T ss_pred             HHHHHHHHHHHHHhcCCcccccccceeEeecccCCCcchhh-hHHHHHHHHHHHHHHH-HHHHHHh----------ccCC
Confidence            99999999999876654  4467899999999997666666 9999999999999966 5776621          2344


Q ss_pred             C-hHhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHH
Q 014089          173 S-EESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRR  251 (431)
Q Consensus       173 s-~dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAK  251 (431)
                      + ++++|.||++||+|||||+||++++++..+.    .+++||++++|.+|..+||||||||+|+||+.+.++++++|||
T Consensus       132 ~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~----~~~~Dl~~~~l~~l~~l~LAqAQe~~~~ka~~~~~~~~~liak  207 (345)
T cd09034         132 GSEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPD----ELPVDLTEAVLSALSLIMLAQAQECFLLKAEEDKKAKLSLLAR  207 (345)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHhccccCCC----CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCcHHHHHH
Confidence            5 7999999999999999999999999877653    2667999999999999999999999999999943389999999


Q ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHHHHHHHHHH
Q 014089          252 LACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAVAALQAADE  328 (431)
Q Consensus       252 LA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaIa~L~~A~~  328 (431)
                      ||+|++++|++|.+.+++.+...    ...++.+| .++.+|...|    .+.+ ||+ ..+.+.+++|++|+||+.|..
T Consensus       208 La~~~~~~y~~A~~~l~~~~~~~----~~~~~~~w~~~v~~K~~~~----~a~a~~~~a~~~~e~~~~G~aia~L~~A~~  279 (345)
T cd09034         208 LACEAAKYYEEALKCLSGVDLET----IKNIPKKWLLFLKWKKCIF----KALAYYYHGLKLDEANKIGEAIARLQAALE  279 (345)
T ss_pred             HHHHHHHHHHHHHHHHhcCCchh----hhhhhHHHHHHHHHHHHHH----HHHHHHHHHHHhhccccHHHHHHHHHHHHH
Confidence            99999999999999999766420    01255677 7777776544    3333 445 788889999999999999999


Q ss_pred             HHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccc
Q 014089          329 YFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDE  401 (431)
Q Consensus       329 ~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~  401 (431)
                      .++++.+.++.+..        ++++.++.+.++|++.+++++||||+|| ||+||+  +||++++..+ |+|.|
T Consensus       280 ~~~~~~~~~~~~~~--------~~~~~~~~l~~~i~~~l~~~~kdNd~Iy-~e~VP~~~~Lp~i~~~~~-v~~~p  344 (345)
T cd09034         280 LLKESERLCKSFLL--------DVWGNLKKLKEKIEKELEKAERENDFIY-FEEVPPEDPLPEIKGALL-VKPPP  344 (345)
T ss_pred             HHHHHHHHHHhccc--------hHHHHHHHHHHHHHHHHHHHHhhhhHhh-cccCCCCCCCCccccccc-cCCCC
Confidence            99999998765431        3677889999999999999999999999 999997  5999999999 77764

This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to

>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains

Probab=100.00  E-value=1.8e-59  Score=471.43  Aligned_cols=312  Identities=17%  Similarity=0.155  Sum_probs=256.8

Q ss_pred             EecCCCCCCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014089           26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG  105 (431)
Q Consensus        26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~  105 (431)
                      +.+| ||+|++|||.+||++||.++|.++.+.+.+++..+. ++|+.++++.|         + +..++.|.+||.+|..
T Consensus         2 i~l~-lK~T~~vd~~~~L~~yI~~~Y~e~~~~y~~~l~~l~-~LR~~~~~~~~---------~-~~g~~~L~~YY~qL~~   69 (350)
T cd09244           2 IPLG-LKETKEIDFMEPFKDFILEHYSEDPSLYEDEIADFT-DLRQAMRTPSR---------D-EAGIELLFEYYNQLYF   69 (350)
T ss_pred             CCCC-CCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhhCCCC---------C-hhHHHHHHHHHHHHHH
Confidence            4566 999999999999999999999877777777665543 45555555442         1 2345679999999998


Q ss_pred             cccCCCCc--ccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHH
Q 014089          106 LVKDGSQL--QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDI  183 (431)
Q Consensus       106 l~~~~~~~--~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~  183 (431)
                      +..++++.  ..+|.|+|+|+|++ .+++++|+.||++||||||||+ |||+|+.          ++|.+++|+|+||++
T Consensus        70 le~RFp~~~~~~~v~F~W~Ds~~~-~~~~q~sl~fEkasVLFNigAl-~Sq~aa~----------~~r~~~eglK~A~~~  137 (350)
T cd09244          70 VERRFFPPDRSLGIYFHWYDSLTG-VPSVQRSVAFEKASVLFNIGAL-YTQIGAK----------QDRTTEEGIEAAVDA  137 (350)
T ss_pred             HHhcCCCccccccceeeeecccCC-CccccccHHHHHHHHHHHHHHH-HHHHHHH----------hccCChHHHHHHHHH
Confidence            76555333  25899999999987 7899999999999999999955 6998732          467899999999999


Q ss_pred             HHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHH-----HHHHHHHHHH
Q 014089          184 FLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAV-----KRRLACEMVK  258 (431)
Q Consensus       184 fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sl-----IAKLA~q~s~  258 (431)
                      ||+|||||+||++++.+.        +++||++++|++|..|||||||||||+||+.+..+++++     |||||.|+++
T Consensus       138 Fq~AAG~F~~l~e~~~~~--------ps~Dls~~~L~~L~~LmLAQAQEc~~~Kai~d~~~k~~~~~~~~lAklA~qv~~  209 (350)
T cd09244         138 FQRAAGAFNYLRENFSNA--------PSMDLSPEMLEALIKLMLAQAQECVFEKLVLPGEDSKDIQACLDLAQEAAQVSD  209 (350)
T ss_pred             HHHHHHHHHHHHHhccCC--------CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHHH
Confidence            999999999999997542        346999999999999999999999999999843377887     9999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHH-H-HhcCccchhHHHHHHHHHHHHHHHHHHH
Q 014089          259 YWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWF-L-LLLPSEKFHGMAVAALQAADEYFKESKK  335 (431)
Q Consensus       259 ~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~-~-~~l~~~~k~GeaIa~L~~A~~~l~~a~~  335 (431)
                      +|++|.+.++.....      ..++.+| .++++|+..|    .+.++| + +.+.+.+++|++|++|+.|..+.+++.+
T Consensus       210 ~Y~~a~~~~~~~~~~------~~i~~~W~~~v~~K~~~f----~AlA~y~~a~~l~~~~~~g~~~a~L~~A~~~~e~a~~  279 (350)
T cd09244         210 CYSEVHKLMNQEPVK------DYIPYSWISLVEVKSEHY----KALAHYYAAMGLLLEERRLLGKAHLKEALLLHEEALR  279 (350)
T ss_pred             HHHHHHHHHhccccc------cccCHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999854432      1467789 8999998666    333444 4 8889999999999999999999999999


Q ss_pred             H---HhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCCC
Q 014089          336 A---CEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMET  386 (431)
Q Consensus       336 ~---~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~~  386 (431)
                      .   |+.+..      ...+.+.++..++++..+++++++||||+| |..||+-
T Consensus       280 ~~~~c~~~~~------~~~l~~~l~~~~~~~~~~~~~~~~~~d~~~-~~~~p~~  326 (350)
T cd09244         280 LHRMCRFLRN------VDSLQEVLKEAHDRSLNKYSSLEEEDDFSD-ALDAPDI  326 (350)
T ss_pred             HHHHHhhhcc------hHHHHHHHHHHHHHHHHHHHhhccccchhh-ccccCCc
Confidence            5   554432      345888999999999999999999999999 9888764

This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac

>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome

Probab=100.00  E-value=4.4e-57  Score=461.69  Aligned_cols=320  Identities=23%  Similarity=0.297  Sum_probs=247.9

Q ss_pred             EecCCCCCCcccccchHHhhHHHHHH----------HHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHH
Q 014089           26 VYVPGLRIPKPVDFSQSLGDNLSKNM----------VERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQA   95 (431)
Q Consensus        26 ~~~p~lk~~~~vd~~~~l~~~I~~~~----------~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~   95 (431)
                      +.+| +|+|++|||.++|++||.++|          +++++.+|+++....                    +..+.+++.
T Consensus         3 ~~lp-lK~t~~vd~~~~l~~~i~~~y~~~~~~~~~~l~~l~~lR~~~~~~~--------------------~~~~~~~~~   61 (377)
T PF03097_consen    3 LSLP-LKKTKEVDLKKPLKKYISSHYGEDPDSFDEDLKELDKLRQDARNPQ--------------------SPSESGLKL   61 (377)
T ss_dssp             --------BEEE-CHHHHHHHHHHHCSSCCHCCHHHHHHHHHHHHHHHTSS---------------------SSHHHHHH
T ss_pred             CCCC-CCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccC--------------------CCchhHHHH
Confidence            4567 999999999999999999987          446777777754321                    122456778


Q ss_pred             HHHHHHHHhccccCCCCcccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChH
Q 014089           96 LEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEE  175 (431)
Q Consensus        96 l~~Yl~~L~~l~~~~~~~~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~d  175 (431)
                      |.+||++|..+..+.+....+|.|+|+|+|+.+.+++++++.||++|||||+|++ |++.|+..          ++.+++
T Consensus        62 l~~Y~~~L~~l~~~~p~~~~~i~F~W~d~~~~~~~~~~~~~~fE~a~vL~N~aa~-~s~~a~~~----------~~~~~~  130 (377)
T PF03097_consen   62 LEEYYPQLESLEKRFPSDQIQISFTWSDSLSTGKPVSQSSLAFEKACVLFNIAAL-YSQLAASQ----------NRSTDE  130 (377)
T ss_dssp             HHHHHHHHHHHCCCSCSSCCTT-EEEE-TTSTTSEEEESSHHHHHHHHHHHHHHH-HHHHHHHS-----------TTSHH
T ss_pred             HHHHHHHHHHHHHhcccccceeeEeeeccccCCCcccchhhHHHHHHHHHHHHHH-HHHHHHhc----------ccccch
Confidence            9999999999876664334579999999997668999999999999999999955 68876332          456899


Q ss_pred             hHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHH
Q 014089          176 SRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACE  255 (431)
Q Consensus       176 glK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q  255 (431)
                      ++|.|+++||+|||||+||++++..        .++.||++++|.+|..+||||||||+|+||+. +++++++|||||.+
T Consensus       131 ~~k~A~~~fq~AAg~f~~l~~~~~~--------~~s~Dl~~~~l~~l~~l~lAqAQe~~~~ka~~-~~~~~~liAKLa~~  201 (377)
T PF03097_consen  131 GLKEACNYFQRAAGIFQYLRENFKD--------SPSPDLSPEVLSALSNLMLAQAQECFYEKAIA-DKKKPSLIAKLAAQ  201 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHSSS---------SSGGGSHHHHHHHHHHHHHHHHHHHHHHHHH-TTG-HHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhcc--------cCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHH-ccCchHHHHHHHHH
Confidence            9999999999999999999999432        23459999999999999999999999999999 78899999999999


Q ss_pred             HHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcCccchhHHHHHHHHHHHHHHHH
Q 014089          256 MVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLPSEKFHGMAVAALQAADEYFKE  332 (431)
Q Consensus       256 ~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~~~~k~GeaIa~L~~A~~~l~~  332 (431)
                      ++++|++|.+.++......      .+...| .++.+|...|    .|.++||  ..+.+.++||++|+||+.|.+.+++
T Consensus       202 ~~~~Y~~a~~~l~~~~~~~------~~~~~w~~~~~~K~~~~----~A~A~y~~A~~~~~~~~~G~aia~L~~A~~~l~~  271 (377)
T PF03097_consen  202 ASELYDEAHEALQSSPLSE------SIPKDWRSYVQVKSAYY----RALAHYHQALAAEEAKKYGEAIARLRRAEEALKE  271 (377)
T ss_dssp             HHHHHHHHHHHHTTCHHHH------CSHCCHHHHHHHHHHHH----HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcccccc------cccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHH
Confidence            9999999999999876411      245689 8888888666    3444555  7779999999999999999999999


Q ss_pred             HHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccCC
Q 014089          333 SKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQL  404 (431)
Q Consensus       333 a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~l  404 (431)
                      +.+.++.+      ...+.+...++.+.+.|+..+++++||||+|| |++||+  ++|++++..+ |+|+|++-
T Consensus       272 a~~~~~~~------~~~~~~~~~~~~l~~~i~~~l~~~~kdNd~Iy-~e~VP~~~~L~~~~~~~~-vk~~~~~~  337 (377)
T PF03097_consen  272 ASKLAKKC------SKSSSLQDDLKSLLDQIQEKLEKAEKDNDFIY-HEPVPSESELPPIKPASM-VKPIPPPE  337 (377)
T ss_dssp             HHHHCCCH------SCCSTTTHHHHHHHHHHHHHHHHHHHHHHHTT---S--SCGGSGGS-SSST-T----HHC
T ss_pred             HHhhhhcc------cchHHHHHHHHHHHHHHHHHHHHHHhcccccc-cccCCCcccccccccccc-cCCCCCcc
Confidence            99886543      12445777899999999999999999999999 999996  5889999999 99987663

The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....

>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1

Probab=100.00  E-value=3.4e-54  Score=433.69  Aligned_cols=311  Identities=15%  Similarity=0.114  Sum_probs=244.4

Q ss_pred             EecCCCCCCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014089           26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG  105 (431)
Q Consensus        26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~  105 (431)
                      +.+| +|+|.+|||.+||++||.++|.++.+.++++|..+. ++|+.++++.+         + +..++.|.+||.+|..
T Consensus         2 i~lp-lK~T~~vDl~~pL~~yI~~~Y~q~~~~y~~dl~~l~-~LR~~~~~~~~---------~-~sgle~L~~YY~qL~~   69 (384)
T cd09248           2 IPLG-LKETKELDLPTPLKELISEHFGEDGTSYEAEIRELE-DLRQAMRTPSR---------S-EAGLELLMAYYNQLCF   69 (384)
T ss_pred             CCCC-CCcCCcCChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhcCCCC---------C-hhHHHHHHHHHHHHHH
Confidence            4577 999999999999999999999776666666655443 34444333321         1 2345679999999998


Q ss_pred             cccCCCCc--ccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHH
Q 014089          106 LVKDGSQL--QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDI  183 (431)
Q Consensus       106 l~~~~~~~--~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~  183 (431)
                      +..+++..  ..+|.|+|+|+|++ .+++++|+.||++||||||||+ |||+|.    .      ++|.++||+|.||++
T Consensus        70 Le~RFp~~~~~~~v~FtW~Daf~~-~~~~q~sl~FEKasVLFNigAL-~Sqlaa----~------~~r~t~eGlK~A~~~  137 (384)
T cd09248          70 LDARFFPPAKSLGLFFHWYDSLTG-VPAQQRALAFEKGSVLFNIGAL-HTQIGA----R------QDRSCTEGTRRAIDA  137 (384)
T ss_pred             HHhcCCCCcccccceeeeeccCCC-CccccccHHHHHHHHHHhHHHH-HHHHHh----h------ccCCChHHHHHHHHH
Confidence            86555332  25899999999986 6899999999999999999977 699872    2      478899999999999


Q ss_pred             HHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhH-------hhcccchHHHHHHHHHH
Q 014089          184 FLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAI-------DSTKATLAVKRRLACEM  256 (431)
Q Consensus       184 fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi-------~~~k~k~slIAKLA~q~  256 (431)
                      ||+|||||+||++++.+.        |++||++++|.+|..|||||||||||+|++       . +++++++|||||.|+
T Consensus       138 FQ~AAG~F~~L~e~~~~~--------Ps~Dms~~~L~~L~~LMLAQAQEC~~eKail~~~~~~~-d~~k~~~iAKlAaQv  208 (384)
T cd09248         138 FQRAAGAFSLLRENFSNA--------PSPDMSTASLSMLEQLMVAQAQECIFEGLLLPLLATPQ-DFFAQLQLAQEAAQV  208 (384)
T ss_pred             HHHHHHHHHHHHHHhccC--------CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc-ccchhhHHHHHHHHH
Confidence            999999999999996532        346999999999999999999999999999       4 678899999999999


Q ss_pred             HHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcC----------------------
Q 014089          257 VKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLP----------------------  311 (431)
Q Consensus       257 s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~----------------------  311 (431)
                      +++|++|++.++.....      ..+...| .++++|+..|    .|.++||  .++.                      
T Consensus       209 s~~Y~~a~~~~~~~~~~------~~i~~~W~~~v~~K~~hF----~AlA~y~~A~~~~~~~~~~~~~~~~~e~~~~~~~~  278 (384)
T cd09248         209 AAEYRLVHRTMAQPPVR------DYVPFSWTALVHVKAEHF----CALAHYHAAMALCDSSPASEGELATQEKAFLQPHT  278 (384)
T ss_pred             HHHHHHHHHHHhccccc------ccCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcccccccchHHHHHHhccCCC
Confidence            99999999999855542      1366789 9999999776    3344555  5532                      


Q ss_pred             -------------ccchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhccccccc
Q 014089          312 -------------SEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLY  378 (431)
Q Consensus       312 -------------~~~k~GeaIa~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY  378 (431)
                                   +..+.|+  ++|+.|....+||.++.+- +..  ......+.+.++..+++...++...++||||+|
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~--ahl~~a~~~~eea~r~~~~-c~~--l~~~~~l~~~l~~~~~~s~~~~~~~~~~~d~~~  353 (384)
T cd09248         279 SQPEGPSLPQEPEERRKLGK--AHLKRAILGQEEALRLHAL-CRI--LRKVDLLQAVLTQALRRSLAKYSELDREDDFFE  353 (384)
T ss_pred             CCCCccccccChHHHHHHHH--HHHHHHHHhhHHHHHHHHH-HHH--hccHHHHHHHHHHHHHHHHHHHhhhccccchhh
Confidence                         1245666  8999999999999988441 100  111233677888888899999999999999999


Q ss_pred             CCCccCC
Q 014089          379 SYEKIME  385 (431)
Q Consensus       379 ~hq~VP~  385 (431)
                       ...-|+
T Consensus       354 -~~~~~~  359 (384)
T cd09248         354 -TGEAPD  359 (384)
T ss_pred             -ccccCc
Confidence             665555

This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i

>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily

Probab=100.00  E-value=2.4e-54  Score=436.84  Aligned_cols=325  Identities=18%  Similarity=0.226  Sum_probs=245.7

Q ss_pred             CCcccccchHHhhH---HHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhccccC
Q 014089           33 IPKPVDFSQSLGDN---LSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKD  109 (431)
Q Consensus        33 ~~~~vd~~~~l~~~---I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~l~~~  109 (431)
                      .|+.|.|...+..-   -..++-+ .+..|+.+....   ....+.+.+   ..+   -..+....|..|++.|.++..+
T Consensus         7 ~t~~~~f~~~~~~~~~~t~~~l~~-~s~~r~~~~~~~---~~~~~~~~~---~~~---~~~~yl~~L~~~~~~L~~~~~~   76 (346)
T cd09247           7 KTKKIVFEKTFQARDSLTLEQLKE-LSLRRRAIIESI---NGSPFIALA---IAR---EKAQYLPYLEGYLPALENLVNH   76 (346)
T ss_pred             CccccchhhhhhcCCcccccccch-hhHHHHHHHHHh---hcCCCccHH---HHH---hhhhHHHHHHHHHHhhccCCcc
Confidence            55667776655554   2223344 566565554432   111112111   111   0013456788888888887655


Q ss_pred             C--CCcccceeEeeeccCCC---CccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHHH
Q 014089          110 G--SQLQYKVQFVWVNQEDE---AEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIF  184 (431)
Q Consensus       110 ~--~~~~~~v~F~W~ds~~~---~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~f  184 (431)
                      .  ..++.+|.|+|+|+|++   ...+++.+++||++|||||+|++ ||++|..+            ...|++|.||++|
T Consensus        77 ~~~~~l~~~i~F~W~~~l~~~~~~~~~~~~sl~fE~~~vLfn~aa~-~s~~A~~~------------~~~e~~K~A~~~l  143 (346)
T cd09247          77 RDKVQLNEQLSFRWTSGLGSSKGPKAFQSDSLRFELGMVLFLYGAA-LRERASEV------------LPTEDFKEAATHL  143 (346)
T ss_pred             chHHhhcccCceeeecccCCCCCCceeeccchHHHHHHHHHHHHHH-HHHHHHHh------------ccHHHHHHHHHHH
Confidence            3  24678999999999987   34578889999999999999965 68887432            1237899999999


Q ss_pred             HHHHhHHHHHHHhhCCCCCccc-ccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHHHHHHHHHH
Q 014089          185 LKAAGYLDCAVRHVLPQMSPEL-RRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQA  263 (431)
Q Consensus       185 q~AAG~F~~l~e~~l~~~~~~~-~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q~s~~Y~~A  263 (431)
                      |+|||||+||+++++|.+..+. ...+|+||+++++.+|+.|||||||||+|+||++ ++++++||||||+|++++|++|
T Consensus       144 ~~AAG~f~~l~~~~l~~~~~~~s~~~~~~Dl~~~~~~aL~~l~LAqAQe~~~~KAi~-~~~~~sliAKLa~~~~~~y~~A  222 (346)
T cd09247         144 RRAAGVFEFLAHDELPRLRGALSADERPPECTPSLALAMSLLCLAEAQAVTARKAEE-KGTSPSLLAKLHYGATQFLEEA  222 (346)
T ss_pred             HHHHHHHHHHHhccccccccCcccCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHH-cCCChHHHHHHHHHHHHHHHHH
Confidence            9999999999999998876543 3456789999999999999999999999999999 6789999999999999999999


Q ss_pred             HHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHHHHHHHHHHHHHHHHHHHhhc
Q 014089          264 QDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAVAALQAADEYFKESKKACEAF  340 (431)
Q Consensus       264 ~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~~~~  340 (431)
                      .+.+++....  +.   .+..+| +++.+|...|    .+.+ ||+ .++.++++||++|++|+.|.+.++++.+.+..+
T Consensus       223 ~~~l~~~~~~--~~---~i~~~~~~~l~~k~~~~----~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~l~~~~~~~~~~  293 (346)
T cd09247         223 KNVLRSLATD--LK---DLDPRFLRFISSCIALH----EARSQLYLARRLKEAGHIGVAVGVLREALRNLKKKLPGSDIS  293 (346)
T ss_pred             HHHHHccCcc--hh---hcCHHHHHHHHHHHHHH----HHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhccCchh
Confidence            9999865421  00   244567 6776666444    2223 566 888899999999999999999998887653211


Q ss_pred             ccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccC
Q 014089          341 NVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQ  403 (431)
Q Consensus       341 ~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~  403 (431)
                                 ....++.+.+.|+..+++++||||||| ||+||+  +||+|++..| |+|+||+
T Consensus       294 -----------~~~~~~~~~~~i~~~l~~a~kdNd~IY-~e~VP~~~~L~~~~~~~~-vk~ip~~  345 (346)
T cd09247         294 -----------SPVIFRDERAEVATLLQKYEKENEVIY-FEKVPDIDELPLPEGKVI-VKPVPYK  345 (346)
T ss_pred             -----------HHHHHHHHHHHHHHHHHHHHhccCeEE-eecCCCccccCCCccccc-eeecCCC
Confidence                       235577888899999999999999999 999995  6999999999 9999986

This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in

>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains

Probab=100.00  E-value=2.6e-53  Score=436.25  Aligned_cols=358  Identities=18%  Similarity=0.178  Sum_probs=261.7

Q ss_pred             CCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhccccCCC-
Q 014089           33 IPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGLVKDGS-  111 (431)
Q Consensus        33 ~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~l~~~~~-  111 (431)
                      .|..|.|...+.+--...++.+.+..|.++....   ....|+++    ... .+.+..++++|++||++|.+|..+.+ 
T Consensus         8 tTs~~sF~~~~~~~~~~~l~~~a~~~R~~lr~~l---k~~k~~~~----~~~-~~~~~~~~~aL~~Ylp~L~~l~~~~~~   79 (413)
T cd09245           8 TTSSISFSDFFNSDSYPSLPLNATTARAVLRAAL---KAHKRTPP----GSQ-ASNLLTVVKALEEYLPYLLAIDACLSH   79 (413)
T ss_pred             CCcccchhhhcCCCcccchhhHHHHHHHHHHHHH---HhcccCCc----ccc-cccHHHHHHHHHHHHHHHHHHHccCCc
Confidence            5667888866666444467899999999987765   22222222    222 35567889999999999999876543 


Q ss_pred             ---CcccceeEeeeccCCCCc-----cccccchHHHHHHHHHHHHHHHHHHHhhhhccCCC-CCC------CCCCCChHh
Q 014089          112 ---QLQYKVQFVWVNQEDEAE-----ETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTS-ADG------YQPKVSEES  176 (431)
Q Consensus       112 ---~~~~~v~F~W~ds~~~~~-----~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~-~~g------~~~~~s~dg  176 (431)
                         .++..|.|+|+|+|+++.     .+++++++||++|||||+|++ ||+.|..+....+ .+.      ...+.++|+
T Consensus        80 ~~~~l~~~i~F~W~~tl~~~~~~~~~~~~~~sl~fE~a~VLfnla~l-~S~~A~~~l~~~~~~~~~~~is~~~~~~~~e~  158 (413)
T cd09245          80 DELILKSEPTFEWRTTLSSTSGRESPRLPLPGLHYELAFVLLTYAYA-LSNLARSILAPLGAYETDRSISDASRKQRDER  158 (413)
T ss_pred             chhcccccceeEeecccccCCCCCCcccccCCHHHHHHHHHHHHHHH-HHHHHHHHhcccccccccccccccccccchHH
Confidence               334679999999997653     489999999999999999955 6777744321100 000      123678999


Q ss_pred             HHHHHHHHHHHHhHHHHHHHhhCCCCCccc-ccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhh------c-------
Q 014089          177 RRASVDIFLKAAGYLDCAVRHVLPQMSPEL-RRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDS------T-------  242 (431)
Q Consensus       177 lK~A~~~fq~AAG~F~~l~e~~l~~~~~~~-~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~------~-------  242 (431)
                      +|.|+++||+|||||+||+++++|.+..+. ...+|+||+++++.+|+.|||||||||+|+|++..      +       
T Consensus       159 lK~A~~~l~~AAGvf~~L~~~~l~~~~~~~~~~~~~~DLs~~~l~aL~~L~LAqAQel~~~K~~~~~~~~d~~~~~~ap~  238 (413)
T cd09245         159 LKAATKLLCKAAGIFDYLATRVLPQWESNRGGAPPPPDLSPEVLSALSSLALAEATLLAVRKLDPYPAAVDKDWMTPGPP  238 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccccccCCCCCcccCHHHHHHHHHHHHHHHHHHHHHhhhhhcccccchhcccCcc
Confidence            999999999999999999999998876432 23567899999999999999999999999998762      1       


Q ss_pred             --cc--chHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccch
Q 014089          243 --KA--TLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKF  315 (431)
Q Consensus       243 --k~--k~slIAKLA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k  315 (431)
                        |+  +++||||||++++++|++|.+.++..+....+   ..+..+| +|+..|+..|    .+.+ ||+ +++.++++
T Consensus       239 ~~k~~~s~sLiAKLa~~~~~~y~~A~~~l~~~~~~~~~---~~i~~~~~~yl~~k~~~~----~A~A~~~~g~d~~e~~k  311 (413)
T cd09245         239 LPKVHPSAHLLARLCLAASEHAESARALLSTPGSKRGS---GEVSEELLRYLSDLRRVA----RALACKFLGIDAGENGK  311 (413)
T ss_pred             cccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccc---ccccHHHHHHHHHHHHHH----HHHHHHHHHHhhHhcCC
Confidence              22  56999999999999999999999876542111   1244567 6666665333    2222 667 88899999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhhcccCC-CC-------CCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--
Q 014089          316 HGMAVAALQAADEYFKESKKACEAFNVAP-PL-------SRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--  385 (431)
Q Consensus       316 ~GeaIa~L~~A~~~l~~a~~~~~~~~~~~-p~-------~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--  385 (431)
                      ||++|++|+.|...++++......-.... +.       .+....+..++...++|++.+++++||||+|| ||+||+  
T Consensus       312 ~GeaIa~L~~A~~~L~~~~~~~~~~~~~~l~~~~~~~r~~~~~~~~~~~~~e~~~i~~~l~~~~K~ND~Iy-~q~VP~~~  390 (413)
T cd09245         312 VGEAIGWLRAAKKELEDLKSPSGVASKAKLKKSWKEKREDRKVEKGAGVEEELRTLEMLLKKYKKMNDTVS-FQPVPPSS  390 (413)
T ss_pred             HHHHHHHHHHHHHHHHHhhhccccccccccchhhhhhhhhhhchhhhhHHHHHHHHHHHHHHHHHhcceee-eecCCChH
Confidence            99999999999999887775321000000 00       00111113467788899999999999999999 999996  


Q ss_pred             CC-CCCCcccccccccccCCCCC
Q 014089          386 TA-PTLPDFALALKPDEFQLPPV  407 (431)
Q Consensus       386 ~l-p~l~~~~l~vkp~~~~lP~~  407 (431)
                      +| ..+|.+.-+++|.||..|.+
T Consensus       391 ~L~~~~P~Gr~i~~~~~~~~p~~  413 (413)
T cd09245         391 ELQSSMPSGREAHTAKPYTPPPS  413 (413)
T ss_pred             hhhhcCCCcccccCCCCCCCCCC
Confidence            44 46776665599999998863

This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop

>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2

Probab=100.00  E-value=4.9e-49  Score=395.97  Aligned_cols=314  Identities=17%  Similarity=0.133  Sum_probs=235.0

Q ss_pred             EecCCCCCCcccccchHHhhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhc
Q 014089           26 VYVPGLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLG  105 (431)
Q Consensus        26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~  105 (431)
                      +.+| +|+|.+|||++||++||.++|.++.+.+++++..+. ++|+.++++.|         + +..++.|.+||.+|..
T Consensus         2 i~lp-lK~T~~VD~~~pL~~yI~~~Y~q~~~~y~~dl~~l~-~LR~~~~~~~~---------~-~sg~e~L~~YY~qL~~   69 (385)
T cd09249           2 IPLG-LKETKDVDFSVPLKDFILEHYSEDGSEYEDEIADLM-DLRQACRTPSR---------D-EAGVELLMSYFSQLGF   69 (385)
T ss_pred             CCCC-CCcCCccChHHHHHHHHHHHcCCCHHHHHHHHHHHH-HHHHHhcCCCC---------C-hhHHHHHHHHHHHHHH
Confidence            3456 999999999999999999999777666666665443 34444333321         1 2345679999999998


Q ss_pred             cccCCCCc--ccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHHHHH
Q 014089          106 LVKDGSQL--QYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDI  183 (431)
Q Consensus       106 l~~~~~~~--~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A~~~  183 (431)
                      +..+++..  ..+|.|+|+|+|++ .+++++|+.||++||||||||+ |||+|+    +      +++.+++|+|.||.+
T Consensus        70 Le~RFp~~~~~~~v~FtW~Dsf~~-~~~~q~sl~fEkasVLFNigAl-~Sqlaa----~------~~r~t~eGlK~A~~~  137 (385)
T cd09249          70 LENRFFPPTRQMGILFTWYDSFTG-VPVSQQNLLLEKASILFNIGAL-YTQIGT----R------CNRQTQAGLESAVDA  137 (385)
T ss_pred             HHhhCCCCcccccceeeeeccCCC-CccccccHHHHHHHHHHhHHHH-HHHHHH----H------hccCCchhHHHHHHH
Confidence            86665332  36789999999986 7899999999999999999955 699872    2      467899999999999


Q ss_pred             HHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHH-----HHHHHHHHHH
Q 014089          184 FLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAV-----KRRLACEMVK  258 (431)
Q Consensus       184 fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~sl-----IAKLA~q~s~  258 (431)
                      ||+|||||+||++++.+        .|+.||++++|.+|..|||||||||||+|++. +++++++     |||||.|+++
T Consensus       138 FQ~AAG~F~~L~e~~~~--------~ps~Dls~~~L~~L~~LmLAQAQEc~~~Kai~-d~~k~~~~~i~kiAklAaqvs~  208 (385)
T cd09249         138 FQRAAGVLNYLKETFTH--------TPSYDMSPAMLSVLVKMMLAQAQECLFEKISL-PGIRNEFFTLVKMAQEAAKVGE  208 (385)
T ss_pred             HHHHHHHHHHHHHhccC--------CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHh-ccCcchhhHHHHHHHHHHHHHH
Confidence            99999999999999643        23469999999999999999999999999998 6777887     8999999999


Q ss_pred             HHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH--HhcCc-----------cch-hH------
Q 014089          259 YWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL--LLLPS-----------EKF-HG------  317 (431)
Q Consensus       259 ~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~--~~l~~-----------~~k-~G------  317 (431)
                      +|++|.+.++......      .++.+| .++++|+..|    .|.++|+  ..+.+           .++ .|      
T Consensus       209 ~Y~~a~~al~s~~~~~------~i~~~W~~~v~~K~~~f----~AlA~Y~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~  278 (385)
T cd09249         209 VYMQVHTAMNQAPVKE------NIPYSWSSLVQVKAHHY----NALAHYFVATLLIDHQLNPSDDEDKQEKALSQLYDHM  278 (385)
T ss_pred             HHHHHHHHHhcccccc------cCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHhhhcCcccchHHHHHHHHHHHHhc
Confidence            9999999998655421      367789 9999999766    3334554  54421           111 11      


Q ss_pred             ----------------H--HHHHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccC
Q 014089          318 ----------------M--AVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYS  379 (431)
Q Consensus       318 ----------------e--aIa~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~  379 (431)
                                      .  .=++|+.|...-+||.+...- +..  ......+.+.++..+++-..++...++|-||-. 
T Consensus       279 ~~~~~~~~~~~~~~~~~~~~k~hl~~a~~~~eea~r~~~~-c~~--l~~~~~l~~vl~~~~~~s~~~~~~~~~~~~~~~-  354 (385)
T cd09249         279 PEGLTPLTILKNKQQRRLLGKAHLRRAIMHHEEAIREASL-CKK--LRNIDVLQEVLSAAHNRSLLKYAQHQKEDDFLD-  354 (385)
T ss_pred             cccCChhhhhcccHHHHHHHHHHHHHHHHhhHHHHHHHHH-HHH--HHHHHHHHHHHHHHHHHHHHHHHhhccccchhh-
Confidence                            1  116888888888888877331 100  000122556666667777778888999999887 


Q ss_pred             CCccCCC
Q 014089          380 YEKIMET  386 (431)
Q Consensus       380 hq~VP~~  386 (431)
                      ...-|+.
T Consensus       355 ~~~~~~~  361 (385)
T cd09249         355 LIDAPDI  361 (385)
T ss_pred             ccccCCc
Confidence            6644543

This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-

>KOG2220 consensus Predicted signal transduction protein [General function prediction only]

Probab=100.00  E-value=4.7e-45  Score=395.07  Aligned_cols=317  Identities=21%  Similarity=0.248  Sum_probs=252.8

Q ss_pred             EecCCCCCCcccccchHHhhHHHHHHHH----------HHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHH
Q 014089           26 VYVPGLRIPKPVDFSQSLGDNLSKNMVE----------RLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQA   95 (431)
Q Consensus        26 ~~~p~lk~~~~vd~~~~l~~~I~~~~~~----------~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~   95 (431)
                      +.+| +|.|.++||..||..||...|.+          ++.++|+++....                .+ .    .....
T Consensus         6 ~~~~-lK~t~e~d~~~~l~~~i~~~y~~~~~~~~~~i~~~~~lR~~a~~~~----------------~~-~----~~~~~   63 (714)
T KOG2220|consen    6 LPIP-LKKTSEVDFLKPLSKLIQLSYGESQENRNDAIEKLEKLRNNANGVP----------------KP-S----EGLEV   63 (714)
T ss_pred             cCcc-cccCCccchhhhHHHHHHHhcCCchhhHHHHHHHHHHHHhccccCC----------------cc-h----hhhHH
Confidence            6788 99999999999999999987743          4445555543221                11 1    22346


Q ss_pred             HHHHHHHHhccccCCCCccccee-EeeeccCCCC-ccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCC
Q 014089           96 LEDYLPVLLGLVKDGSQLQYKVQ-FVWVNQEDEA-EETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVS  173 (431)
Q Consensus        96 l~~Yl~~L~~l~~~~~~~~~~v~-F~W~ds~~~~-~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s  173 (431)
                      +.+||.+|+.+..+.+-....+. |+|+|+|+++ .++++.++.||++|||||||++ |+++|+.          +++.+
T Consensus        64 l~~yy~qL~~l~~r~p~~~~~~~~F~W~d~~~~~~~~~~~~~L~fEka~vLfni~~l-~s~iaa~----------~~~~~  132 (714)
T KOG2220|consen   64 LKRYYGQLCYLESRFPMSENEIEEFTWKDAFDSGAKKVTQISLGFEKACVLFNIAAL-YSQIAAH----------QSRET  132 (714)
T ss_pred             HHHHHHHHHHHHHhcCcccccccceeeeecccCCccceeeccchhhHHHHHHHHHHH-HHHHHHH----------hccCc
Confidence            88999999887655433334444 9999999877 8999999999999999999966 6888732          35678


Q ss_pred             hHhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHH
Q 014089          174 EESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLA  253 (431)
Q Consensus       174 ~dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA  253 (431)
                      .|++|.||.+||.|||||.|++++.+..       .+.+|++++++.++..+|+||||||||.+++. +++++++|+||+
T Consensus       133 ~d~~k~a~~~fq~aagaf~~l~~~~~~~-------~~~~d~~~~~l~~~~~l~~AqAQec~f~ks~~-d~~~~~~iaKis  204 (714)
T KOG2220|consen  133 VDGYKAAIAHFQAAAGAFRYLSRDALGV-------EPLVDLSSLTLVFLRFLMLAQAQECFFYKSLT-DNPKPSIIAKLS  204 (714)
T ss_pred             hHHHHHHHHHHHHHHHHHHhhcHHhcCc-------ccccccCHHHHHHHHHhhHHhhchheeehhhc-CCcchHHHHHHH
Confidence            9999999999999999999999443322       35579999999999999999999999999999 889999999999


Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHHHHH-HhcCccchhHHHHHHHHHHHHHHH
Q 014089          254 CEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQTWFL-LLLPSEKFHGMAVAALQAADEYFK  331 (431)
Q Consensus       254 ~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~~~~-~~l~~~~k~GeaIa~L~~A~~~l~  331 (431)
                      .|++.||.+|+++++....       ..+...| .++..|.+.+.+|..   ||+ ....+.+++|++|++|+.+...++
T Consensus       205 ~q~~~fy~~Al~~~~~~~~-------~~~~~~w~~~~~~k~~~~~~v~~---~~~~~~~~e~~~~ge~i~~l~~~~~~l~  274 (714)
T KOG2220|consen  205 AQVVLFYEEALKAQIGARA-------DRITKEWLTLVAAKFARFAGVAY---YYQSLFLHEKSKDGEAIARLQLSLLMLS  274 (714)
T ss_pred             HHHHHHHHHHHHHHHHhhh-------cccchhHHHHHHHHHHHHHHHHH---HHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            9999999999999998211       1356689 788888766633321   455 888999999999999999999999


Q ss_pred             HHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccC--CCCCCCCcccccccccccCCCCC
Q 014089          332 ESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIM--ETAPTLPDFALALKPDEFQLPPV  407 (431)
Q Consensus       332 ~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP--~~lp~l~~~~l~vkp~~~~lP~~  407 (431)
                      +|.+.....        ..++    ....+.++..+++++||||||| |++||  .++|+|+++.+ |+|.+++-|.+
T Consensus       275 ~Aqk~~~~~--------~~~~----~~~~~~~~~~lk~a~kdNdFIy-he~vp~~~~l~~~~~~~~-vkp~~~~~l~~  338 (714)
T KOG2220|consen  275 EAQKCSFGE--------FTDV----IESLSSLEKALKEAKKDNDFIY-HERVPKVSELPPLKAAQL-VKPLPWAVLLP  338 (714)
T ss_pred             HHHHhhccc--------chhH----hhhhhHHHHHHHhhhcccchhh-hcccccccccCCcchhHh-hcCCCcccccc
Confidence            999875431        1122    2333678899999999999999 99999  48999999999 99998885443

>KOG2220 consensus Predicted signal transduction protein [General function prediction only]

Probab=97.87  E-value=5.2e-05  Score=83.75  Aligned_cols=183  Identities=15%  Similarity=0.065  Sum_probs=136.0

Q ss_pred             CcEEEecCCCCCCcccccchHHhhHHHHHHH-HHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHH
Q 014089           22 GEVSVYVPGLRIPKPVDFSQSLGDNLSKNMV-ERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYL  100 (431)
Q Consensus        22 ~~~~~~~p~lk~~~~vd~~~~l~~~I~~~~~-~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl  100 (431)
                      ..+.+...||+++..++.-.+|...|..++. ++-..+.+.+..+. ..+.+.+.++|+.+...  .+++    .-..++
T Consensus        99 ~~~~~~~L~fEka~vLfni~~l~s~iaa~~~~~~~d~~k~a~~~fq-~aagaf~~l~~~~~~~~--~~~d----~~~~~l  171 (714)
T KOG2220|consen   99 KKVTQISLGFEKACVLFNIAALYSQIAAHQSRETVDGYKAAIAHFQ-AAAGAFRYLSRDALGVE--PLVD----LSSLTL  171 (714)
T ss_pred             cceeeccchhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HHHHHHHhhcHHhcCcc--cccc----cCHHHH
Confidence            4488889999999999999999999999998 77777777765554 56777788886544322  1222    122345


Q ss_pred             HHHhccccCCCCcccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHH
Q 014089          101 PVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS  180 (431)
Q Consensus       101 ~~L~~l~~~~~~~~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A  180 (431)
                      ..+..++...   .-.+.|  ++++.+ .+..+--..+++.+++||.+|+. .+.+    ++      .++.+.++++.+
T Consensus       172 ~~~~~l~~Aq---AQec~f--~ks~~d-~~~~~~iaKis~q~~~fy~~Al~-~~~~----~~------~~~~~~~w~~~~  234 (714)
T KOG2220|consen  172 VFLRFLMLAQ---AQECFF--YKSLTD-NPKPSIIAKLSAQVVLFYEEALK-AQIG----AR------ADRITKEWLTLV  234 (714)
T ss_pred             HHHHHhhHHh---hchhee--ehhhcC-CcchHHHHHHHHHHHHHHHHHHH-HHHH----hh------hcccchhHHHHH
Confidence            5555554221   124445  888776 44566667899999999999774 5544    12      367889999999


Q ss_pred             HHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHH
Q 014089          181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLG  236 (431)
Q Consensus       181 ~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~  236 (431)
                      ...|+.++|++.|....+....+        .|..+-.+-.+..+||+|||+|..+
T Consensus       235 ~~k~~~~~~v~~~~~~~~~~e~~--------~~ge~i~~l~~~~~~l~~Aqk~~~~  282 (714)
T KOG2220|consen  235 AAKFARFAGVAYYYQSLFLHEKS--------KDGEAIARLQLSLLMLSEAQKCSFG  282 (714)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhh--------hhhHHHHHHHHHHHHHHHHHHhhcc
Confidence            99999999999999999865543        4899999999999999999999875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	431
3r9m_A	376	BRO1 domain-containing protein BROX; protein bindi	3e-62
3c3r_A	380	Programmed cell death 6-interacting protein; ALIX	7e-34
3rau_A	363	Tyrosine-protein phosphatase non-receptor type 23;	1e-32
1zb1_A	392	BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking	5e-30
2xs1_A	704	Programmed cell death 6-interacting protein; prote	2e-23
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-10

>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A Length = 376

 Score =  205 bits (521), Expect = 3e-62
 Identities = 71/401 (17%), Positives = 143/401 (35%), Gaps = 53/401 (13%)

Query: 31  LRIPKPVDFS--QSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGST 88
           L+   PV F+    +    +  +   L + R R++ +                       
Sbjct: 12  LKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELFT----------------DLSCN 55

Query: 89  LADLHQALEDYLPVLLGLVK------DGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLS 142
              +  A + Y  +L G +         S+L+Y   F W +       +A  +A +E++S
Sbjct: 56  PEMMKNAADSYFSLLQGFINSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELIS 115

Query: 143 VLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQM 202
           +   +A+     A+ L          +  ++E+  +        AAG         LP++
Sbjct: 116 MGFNVALWYTKYASRLAG--------KENITEDEAKEVHRSLKIAAGIFKHLKESHLPKL 167

Query: 203 SPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQ 262
                 E   DL    + A  +Q   +  ++ +  AI+   A   +   LA E   ++Q+
Sbjct: 168 ITP--AEKGRDLESRLIEAYVIQCQAEAQEVTIARAIELKHAP-GLIAALAYETANFYQK 224

Query: 263 AQDNIMNLPLANGWGEKHKLFVKWK--YFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAV 320
           A   + +  L   +  K + ++  K  ++ A             +    L +    G A+
Sbjct: 225 ADHTLSS--LEPAYSAKWRKYLHLKMCFYTAYA---------YCYHGETLLASDKCGEAI 273

Query: 321 AALQAADEYFKESKKACEAFN--VAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLY 378
            +LQ A++ + +++  C+ +     P  +  P      + L   +        R N    
Sbjct: 274 RSLQEAEKLYAKAEALCKEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQREN-GFI 332

Query: 379 SYEKIMETAPTLPDFALA--LKPDEFQLPPVHPSWTDENMN 417
            ++KI   AP L   A    ++P  F+ PP    WT E + 
Sbjct: 333 YFQKIPTEAPQLELKANYGLVEPIPFEFPPTSVQWTPETLA 373

>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A Length = 380

 Score =  129 bits (325), Expect = 7e-34
 Identities = 64/408 (15%), Positives = 134/408 (32%), Gaps = 69/408 (16%)

Query: 22  GEVSVYVP-GLRIPKPVDFSQSLGDNLSKN---MVERLSALRTRIVVMAAQEGPTITRTR 77
           G ++ ++   L+    VD ++ L   + +      E  +        ++           
Sbjct: 20  GHMATFISVQLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKL--------- 70

Query: 78  RKSATQHGGSTLADLHQALEDYLPVLLGLVK--DGSQLQYKVQFVW------VNQEDEAE 129
           R++A            + L  Y   +  +      S+ Q  + F W       +    + 
Sbjct: 71  RRAAVGRPLDKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSV 130

Query: 130 ETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAG 189
           + A+++  YE   VL   A L+   A             Q   ++E  + +   +  A+G
Sbjct: 131 KLALASLGYEKSCVLFNCAALASQIAAE-----------QNLDNDEGLKIAAKHYQFASG 179

Query: 190 YLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVK 249
                  H+   +   L RE  VD++   +  L L  L Q  ++    A        A+ 
Sbjct: 180 AFL----HIKETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKD-AII 234

Query: 250 RRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKWK--YFEAKLLNILIVLVDQTWFL 307
            +LA +   Y+  A          +   ++    +  K    +A           +    
Sbjct: 235 AKLANQAADYFGDAFK---QCQYKDTLPKEVFPVLAAKHCIMQANA---------EYHQS 282

Query: 308 LLLPSEKFHGMAVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDT 367
           +L   +K  G  +A LQ A E  K      + +               +K  S+KI +  
Sbjct: 283 ILAKQQKKFGEEIARLQHAAELIKTVASRYDEYV-------------NVKDFSDKINRAL 329

Query: 368 SSKVRINRDLYSYEKI--METAPTLPDFALALKPDEFQLPPVHPSWTD 413
           ++  + N  +Y ++++  ++    +    L  K       P+   +TD
Sbjct: 330 AAAKKDNDFIY-HDRVPDLKDLDPIGKATLV-KSTPVN-VPISQKFTD 374

>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens} Length = 363

 Score =  126 bits (316), Expect = 1e-32
 Identities = 60/380 (15%), Positives = 117/380 (30%), Gaps = 57/380 (15%)

Query: 30  GLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTL 89
            L+      F  ++   + KN  E   A    +          +   R+ +         
Sbjct: 15  DLKEAGDFHFQPAVKKFVLKNYGENPEAYNEELK--------KLELLRQNAVRVPRDFEG 66

Query: 90  ADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAM 149
             + +     L  L   V  GS  +  V   W       +  A  +  YE   +L+ +  
Sbjct: 67  CSVLRKYLGQLHYLQSRVPMGSGQEAAVPVTWTEIFSG-KSVAHEDIKYEQACILYNLGA 125

Query: 150 LSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRE 209
           L      +             +VSEE  + S   F  AAG            +     + 
Sbjct: 126 LHSMLGAM-----------DKRVSEEGMKVSCTHFQCAAG--------AFAYLREHFPQA 166

Query: 210 LPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYWQQAQDNIMN 269
             VD++   L       LGQ  +  L  ++   + +  +  R++ ++V Y+++A   + N
Sbjct: 167 YSVDMSRQILTLNVNLMLGQAQECLLEKSMLDNRKS-FLVARISAQVVDYYKEACRALEN 225

Query: 270 LPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAVAALQAADEY 329
              A+  G   K + K    +      +               ++  G  VA  Q+A + 
Sbjct: 226 PDTASLLGRIQKDWKKLVQMKIYYFAAVA----HLHMGKQAEEQQKFGERVAYFQSALDK 281

Query: 330 FKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPT 389
             E+ K  +             +   +++  + I    +S  + N  +Y +E +      
Sbjct: 282 LNEAIKLAKGQ--------PDTVQDALRFTMDVIGGKYNSAKKDNDFIY-HEAV------ 326

Query: 390 LPDFALALKPDEFQLPPVHP 409
                    P    L PV  
Sbjct: 327 ---------PALDTLQPVKG 337

>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae} Length = 392

 Score =  119 bits (298), Expect = 5e-30
 Identities = 49/400 (12%), Positives = 118/400 (29%), Gaps = 60/400 (15%)

Query: 30  GLRIPKPVDFSQSLGDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTL 89
            L+  + +D+ + L   L K+               +      +   R  +  +   S+L
Sbjct: 14  KLKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATS-----ELDHLRNNANGELAPSSL 68

Query: 90  ADLHQALEDYLPVLLGLVKDGSQLQYKVQFVWVNQEDEAEETAI----SNAWYEVLSVLH 145
           ++ +     +L  L   +      + K+ F W + E  + +  +        +E    L 
Sbjct: 69  SEQNLKYYSFLEHLYFRL-GSKGSRLKMDFTWYDAEYSSAQKGLKYTQHTLAFEKSCTLF 127

Query: 146 LMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPE 205
            +A++    A               +   E  + S+    KA    +    + L   S  
Sbjct: 128 NIAVIFTQIAR--------------ENINEDYKNSIANLTKAFSCFEYLSENFLNSPSV- 172

Query: 206 LRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKA--TLAVKRRLACEMVKYWQQA 263
                  DL   + R L      +  ++ +   ++   +     +  +L+      +Q+ 
Sbjct: 173 -------DLQSENTRFLANICHAEAQELFVLKLLNDQISSKQYTLISKLSRATCNLFQKC 225

Query: 264 QDNIMNL-PLANGWGEK---HKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGMA 319
            D +  +      +GE      +  K  ++++             +  L L  E   G A
Sbjct: 226 HDFMKEIDDDVAIYGEPKWKTTVTCKLHFYKSLS---------AYYHGLHLEEENRVGEA 276

Query: 320 VAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYS 379
           +A L  + +    S           P       +       E + K     ++ N  +Y 
Sbjct: 277 IAFLDFSMQQLISSL----------PFKTWLVEFIDFDGFKETLEKKQKELIKDNDFIY- 325

Query: 380 YEKIMETA--PTLPDFALALKPDEFQLPPVHPSWTDENMN 417
           +E +       ++        P   ++   +        +
Sbjct: 326 HESVPAVVQVDSIKALDAIKSPTWEKILEPYMQDVANKYD 365

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A Length = 704

 Score =  101 bits (253), Expect = 2e-23
 Identities = 59/393 (15%), Positives = 120/393 (30%), Gaps = 59/393 (15%)

Query: 30  GLRIPKPVDFSQSLGDNLSKN---MVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGG 86
            L+    VD ++ L   + +      E  +        ++           R++A     
Sbjct: 14  QLKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKL---------RRAAVGRPL 64

Query: 87  STLADLHQALEDYLPVLLGLVK--DGSQLQYKVQFVW------VNQEDEAEETAISNAWY 138
                  + L  Y   +  +      S+ Q  + F W       +    + + A+++  Y
Sbjct: 65  DKHEGALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGY 124

Query: 139 EVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHV 198
           E   VL   A L+   A             Q   ++E  + +   +  A+G       H+
Sbjct: 125 EKSCVLFNCAALASQIAA-----------EQNLDNDEGLKIAAKHYQFASGAFL----HI 169

Query: 199 LPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVK 258
              +   L RE  VD++   +  L L  L Q  ++    A        A+  +LA +   
Sbjct: 170 KETVLSALSREPTVDISPDTVGTLSLIMLAQAQEVFFLKATRDKMKD-AIIAKLANQAAD 228

Query: 259 YWQQAQDNIMNLPLANGWGEKHKLFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGM 318
           Y+  A          +   ++    +  K+   +               +L   + + G 
Sbjct: 229 YFGDAFK---QCQYKDTLPKEVFPVLAAKHCIMQANAEY-------HQSILAKQQYYFGE 278

Query: 319 AVAALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLY 378
            +A LQ A E  K              ++     +  +K  S+KI +  ++  + N  +Y
Sbjct: 279 EIARLQHAAELIKT-------------VASRYDEYVNVKDFSDKINRALAAAKKDNDFIY 325

Query: 379 SYEKIMETAPTLPDFALALKPDEFQLPPVHPSW 411
                          A  +K     +P      
Sbjct: 326 HDRVPDLKDLDPIGKATLVKSTPVNVPISQKFT 358

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 60.3 bits (145), Expect = 7e-10
 Identities = 54/392 (13%), Positives = 107/392 (27%), Gaps = 134/392 (34%)

Query: 83  QHGGSTLADLHQALEDYLPVLL-GLVKDGSQLQYKVQFVWVNQEDEAEETAISNAWYE-- 139
            H      +     +D L V     V +     +  + V    +D   ++ +S    +  
Sbjct: 5   HHMDFETGEHQYQYKDILSVFEDAFVDN-----FDCKDV----QDM-PKSILSKEEIDHI 54

Query: 140 ------VLSVLHLMAMLSLSQANLL--LLPRTSADGYQ---PKVSEESRRASVDIFLKAA 188
                 V   L L   L   Q  ++   +       Y+     +  E R+ S+   +   
Sbjct: 55  IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM--- 111

Query: 189 GYLDCAVR-----HVLPQMSPELRRELPVDLAEGDLRALCLQAL--GQGVDIQLGMAIDS 241
            Y++   R      V  + +  + R  P       LR   L  L   + V I  G+   S
Sbjct: 112 -YIEQRDRLYNDNQVFAKYN--VSRLQPYL----KLRQ-ALLELRPAKNVLID-GVL-GS 161

Query: 242 TKATLA--------VKRRLACEMVKYW---------------------------QQAQDN 266
            K  +A        V+ ++  ++  +W                               D+
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKI--FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDH 219

Query: 267 IMNLPLANGWGEKHK--LFVKWKYFEAKLLNILIVLVDQTWFLLLLPSEKFHGMAVAALQ 324
             N+ L     +     L     Y        L+VL                        
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENC-----LLVL-LNVQ------------------- 254

Query: 325 AADEYFKESKKACEAFNVAPPL---SRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYE 381
                   + KA  AFN++  +   +R        K +++ +   T++ + ++     + 
Sbjct: 255 --------NAKAWNAFNLSCKILLTTRF-------KQVTDFLSAATTTHISLD----HHS 295

Query: 382 KIMETAPTLPDFALALKPDEFQLPP----VHP 409
             +            L      LP      +P
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP 327

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	431
3r9m_A	376	BRO1 domain-containing protein BROX; protein bindi	100.0
3c3r_A	380	Programmed cell death 6-interacting protein; ALIX	100.0
3rau_A	363	Tyrosine-protein phosphatase non-receptor type 23;	100.0
2xs1_A	704	Programmed cell death 6-interacting protein; prote	100.0
1zb1_A	392	BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking	100.0

>3r9m_A BRO1 domain-containing protein BROX; protein binding; 1.95A {Homo sapiens} PDB: 3um3_A 3zxp_A 3um2_A 3um1_A 3uly_A 3um0_A

Probab=100.00  E-value=2.1e-68  Score=543.71  Aligned_cols=346  Identities=21%  Similarity=0.359  Sum_probs=291.9

Q ss_pred             CCCCCCcccccchHH--hhHHHHHHHHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHHHHHHHHHHhcc
Q 014089           29 PGLRIPKPVDFSQSL--GDNLSKNMVERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQALEDYLPVLLGL  106 (431)
Q Consensus        29 p~lk~~~~vd~~~~l--~~~I~~~~~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~l~~Yl~~L~~l  106 (431)
                      | ||.|..|+|...+  ++-.+.+.+.+++.+|+++++..               .++ ..+.+.++++|.+||++|.+|
T Consensus        11 ~-lk~T~~v~F~~~~~~~~~~~~~~~~~l~~~R~~l~~~~---------------~~~-~~~~~~~~~~l~~Yl~~L~~l   73 (376)
T 3r9m_A           11 P-LKATAPVSFNYYGVVTGPSASKICNDLRSSRARLLELF---------------TDL-SCNPEMMKNAADSYFSLLQGF   73 (376)
T ss_dssp             C-CCCBCCCCCCCGGGBCSHHHHHHHHHHHHHHHHHHHHT---------------TCT-TCCHHHHHHHHHHHHHHHGGG
T ss_pred             C-CCCCceeeeeeeeecCCchHHHHHHHHHHHHHHHHHHH---------------hcC-CCCHHHHHHHHHHHHHHHHHH
Confidence            5 9999999987644  34556788999999999999887               666 556788889999999999998


Q ss_pred             ccCC------CCcccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCCChHhHHHH
Q 014089          107 VKDG------SQLQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKVSEESRRAS  180 (431)
Q Consensus       107 ~~~~------~~~~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~s~dglK~A  180 (431)
                      ..+.      ..++.+|.|+|+|+|+++.+++++|+.||++||||||||+ |+++|+.+..       .++.++||+|.|
T Consensus        74 ~~~~~~~~~~~~l~~~i~F~W~dsl~~~~~~~~~sl~fE~a~VLfNiaal-~sq~A~~~~~-------~~r~~~e~lK~A  145 (376)
T 3r9m_A           74 INSLDESTQESKLRYIQNFKWTDTLQGQVPSAQQDAVFELISMGFNVALW-YTKYASRLAG-------KENITEDEAKEV  145 (376)
T ss_dssp             TBCSSCTTCBCTTTTSCCEEECCTTSTTCCEEESCHHHHHHHHHHHHHHH-HHHHHHHHHT-------CTTCCHHHHHHH
T ss_pred             HhccccCCccccccccceeEeeCCCCCCCceecccHHHHHHHHHHHHHHH-HHHHHHHhhc-------cccCChHHHHHH
Confidence            7542      2344789999999999778999999999999999999965 6888755532       256889999999


Q ss_pred             HHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHHHHHHHHHH
Q 014089          181 VDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRLACEMVKYW  260 (431)
Q Consensus       181 ~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKLA~q~s~~Y  260 (431)
                      |++||+|||||+||++++++.+.+  ...+++||++++|++|+.+||||||||+|+||+. +++++++|||||+|++++|
T Consensus       146 ~~~fq~AAG~f~~l~~~~~~~~~~--~~~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~~k~~liAKLa~q~~~~Y  222 (376)
T 3r9m_A          146 HRSLKIAAGIFKHLKESHLPKLIT--PAEKGRDLESRLIEAYVIQCQAEAQEVTIARAIE-LKHAPGLIAALAYETANFY  222 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHTGGGCSS--CCCTTSTTSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhhcccC--CCCCCcccCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHH
Confidence            999999999999999999887632  2346789999999999999999999999999999 7889999999999999999


Q ss_pred             HHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHHHHHHHHHHHHHHHHHHH
Q 014089          261 QQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAVAALQAADEYFKESKKAC  337 (431)
Q Consensus       261 ~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaIa~L~~A~~~l~~a~~~~  337 (431)
                      ++|.+.+++...        .++.+| +++++|+..|    .+.+ ||+ +.+.++++||++|+||+.|.+.++++.+.+
T Consensus       223 ~~a~~~l~~~~~--------~i~~~W~~~v~~K~~~~----~A~A~y~~a~~~~~~~k~GeaIa~L~~A~~~l~~a~~~~  290 (376)
T 3r9m_A          223 QKADHTLSSLEP--------AYSAKWRKYLHLKMCFY----TAYAYCYHGETLLASDKCGEAIRSLQEAEKLYAKAEALC  290 (376)
T ss_dssp             HHHHHHHTTSCH--------HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccc--------cccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence            999999986432        477889 9999997555    3333 555 888899999999999999999999999999


Q ss_pred             hhcccCCC--CCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCCCCCCC---CcccccccccccCCCCCCCCCC
Q 014089          338 EAFNVAPP--LSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIMETAPTL---PDFALALKPDEFQLPPVHPSWT  412 (431)
Q Consensus       338 ~~~~~~~p--~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~~lp~l---~~~~l~vkp~~~~lP~~~~~w~  412 (431)
                      +.|....+  .+..++....++.+.+.|++.+++++||||||| ||+||+++|.+   |+++| |+|+||++|+++|.|+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY-~~~VP~~~p~~~~k~~~~l-vk~~~~~~p~~~~~w~  368 (376)
T 3r9m_A          291 KEYGETKGPGPTVKPSGHLFFRKLGNLVKNTLEKCQRENGFIY-FQKIPTEAPQLELKANYGL-VEPIPFEFPPTSVQWT  368 (376)
T ss_dssp             HHHHTCCCSSCCCCGGGSHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCSSCCCCCCCCSSCC-CCCCCCCCCCCCTTCC
T ss_pred             HHhccccCCccccccchhhHHHHHHHHHHHHHHHHHhhcccee-cccCCCCCCCcccccccce-ecCcCCCCCCCChhhh
Confidence            99886542  333343223477788899999999999999999 99999987776   57889 9999999999999999


Q ss_pred             Cccc
Q 014089          413 DENM  416 (431)
Q Consensus       413 ~~~~  416 (431)
                      ++.+
T Consensus       369 ~~~~  372 (376)
T 3r9m_A          369 PETL  372 (376)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7543

>3c3r_A Programmed cell death 6-interacting protein; ALIX BRO1 CHMP4C amphipathic-helix, apoptosis, HOST-virus interaction, protein transport, transport; 2.02A {Homo sapiens} PDB: 2oew_A 3c3o_A 3c3q_A

Probab=100.00  E-value=6.8e-65  Score=518.57  Aligned_cols=323  Identities=21%  Similarity=0.232  Sum_probs=270.5

Q ss_pred             EEecCCCCCCcccccchHHhhHHHHHH-------------HHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHH
Q 014089           25 SVYVPGLRIPKPVDFSQSLGDNLSKNM-------------VERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLAD   91 (431)
Q Consensus        25 ~~~~p~lk~~~~vd~~~~l~~~I~~~~-------------~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~   91 (431)
                      .+.+| ||+|.+|||.++|++||.++|             +++|+.+|++++...               .+   .+ +.
T Consensus        25 ~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~LR~~~~~~~---------------~~---~~-~~   84 (380)
T 3c3r_A           25 FISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRP---------------LD---KH-EG   84 (380)
T ss_dssp             CCCCC-CCCBCCCCCHHHHHHHHHHHCCCCSSSTTSHHHHHHHHHHHHHHHHHSS---------------CC---CS-HH
T ss_pred             ccCCC-CCCCCcCChHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhcC---------------CC---cC-hH
Confidence            45566 999999999999999999885             468889999876532               11   11 23


Q ss_pred             HHHHHHHHHHHHhccccCCCC--cccceeEeeeccCC------CCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 014089           92 LHQALEDYLPVLLGLVKDGSQ--LQYKVQFVWVNQED------EAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRT  163 (431)
Q Consensus        92 ~~~~l~~Yl~~L~~l~~~~~~--~~~~v~F~W~ds~~------~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~  163 (431)
                      ..+.|.+||++|..+..+.+.  .+.+|.|+|+|+|+      ++.+++++|++||++|||||+|++ ||+.|.    . 
T Consensus        85 ~~~~L~~Y~~~L~~l~~rfp~~~~~~~i~F~W~d~~~~~s~~~g~~~~~~~~l~fE~a~VLfNlgal-~s~~A~----~-  158 (380)
T 3c3r_A           85 ALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAAL-ASQIAA----E-  158 (380)
T ss_dssp             HHHHHHHHHHHHHHHTTTTTCSSCCCCCCEEEECSSCCCCSSSCCCEEEESCHHHHHHHHHHHHHHH-HHHHHH----T-
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCccceeEEeecCCccccccCCCCceeeccHHHHHHHHHHHHHHH-HHHHHH----H-
Confidence            456799999999988655422  24789999999996      346889999999999999999966 688762    2 


Q ss_pred             CCCCCCCCCChHhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcc
Q 014089          164 SADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTK  243 (431)
Q Consensus       164 ~~~g~~~~~s~dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k  243 (431)
                           ++|.++||+|.||++||+|||||+||++++++.++.    .+++||++++|.+|+.+||||||||+|+||+. ++
T Consensus       159 -----~~r~~~eglK~A~~~fq~AAG~f~~l~~~~l~~~~~----~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~  228 (380)
T 3c3r_A          159 -----QNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSR----EPTVDISPDTVGTLSLIMLAQAQEVFFLKATR-DK  228 (380)
T ss_dssp             -----SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS----CCCTTTSHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             -----hcCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCC----CCCccCCHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence                 477899999999999999999999999999876543    46789999999999999999999999999999 67


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHH
Q 014089          244 ATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAV  320 (431)
Q Consensus       244 ~k~slIAKLA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaI  320 (431)
                      +++++|||||+|++++|++|.+.++..+         .+...| +++++|+..|    .+.+ ||+ +.+.++++||++|
T Consensus       229 ~k~~liAkLa~~~~~~Y~~A~~~l~~~~---------~~~~~w~~~v~~K~~~~----~A~A~y~~a~~~~e~~k~GeaI  295 (380)
T 3c3r_A          229 MKDAIIAKLANQAADYFGDAFKQCQYKD---------TLPKEVFPVLAAKHCIM----QANAEYHQSILAKQQKKFGEEI  295 (380)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHTTCC---------CSCTTHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHcccc---------cccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHHH
Confidence            8899999999999999999999998322         245678 7888877555    3333 555 8888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccC--CCCCCCCccccccc
Q 014089          321 AALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIM--ETAPTLPDFALALK  398 (431)
Q Consensus       321 a~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP--~~lp~l~~~~l~vk  398 (431)
                      +||+.|.++++++.+.++.+..             ++.+.++|++.+++++||||||| ||+||  ++||+|+++.| ||
T Consensus       296 a~L~~A~~~l~~a~~~~~~~~~-------------l~~l~~~i~~~l~~a~kdNd~IY-~e~VP~~~~Lp~i~~~~l-vk  360 (380)
T 3c3r_A          296 ARLQHAAELIKTVASRYDEYVN-------------VKDFSDKINRALAAAKKDNDFIY-HDRVPDLKDLDPIGKATL-VK  360 (380)
T ss_dssp             HHHHHHHHHHHHHHHHCTTTCC-------------CHHHHHHHHHHHHHHHHHHHHTT-CCCCCCGGGSCCCCCCCC-CC
T ss_pred             HHHHHHHHHHHHHHHHhcchHh-------------HHHHHHHHHHHHHHHHHhhCeec-ccCCCCcccCCCCCCCce-ec
Confidence            9999999999999988765432             45677789999999999999999 99999  48999999999 99


Q ss_pred             ccccCCCCCCCCCC
Q 014089          399 PDEFQLPPVHPSWT  412 (431)
Q Consensus       399 p~~~~lP~~~~~w~  412 (431)
                      |+||++|. ++.|+
T Consensus       361 ~~~~~~p~-~~~~~  373 (380)
T 3c3r_A          361 STPVNVPI-SQKFT  373 (380)
T ss_dssp             CCCCCSCC-SSSCC
T ss_pred             ccCCCCCC-ccchh
Confidence            99999988 88886

>3rau_A Tyrosine-protein phosphatase non-receptor type 23; BRO1 domain, hydrolase; 1.95A {Homo sapiens}

Probab=100.00  E-value=8.1e-65  Score=514.86  Aligned_cols=320  Identities=20%  Similarity=0.219  Sum_probs=263.2

Q ss_pred             EecCCCCCCcccccchHHhhHHHHHH----------HHHHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHHHHHH
Q 014089           26 VYVPGLRIPKPVDFSQSLGDNLSKNM----------VERLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLADLHQA   95 (431)
Q Consensus        26 ~~~p~lk~~~~vd~~~~l~~~I~~~~----------~~~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~~~~~   95 (431)
                      +...|||+|++|||.+||++||.++|          +++|+.||++++...                    .+. ...+.
T Consensus        11 mi~l~lK~t~~vd~~~~L~~~I~~~y~e~~~~~~~~l~~l~~LR~~~~~~~--------------------~~~-~g~~~   69 (363)
T 3rau_A           11 MIWLDLKEAGDFHFQPAVKKFVLKNYGENPEAYNEELKKLELLRQNAVRVP--------------------RDF-EGCSV   69 (363)
T ss_dssp             CCCCCCCCEEEECCHHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHHHTCC--------------------SSH-HHHHH
T ss_pred             ccCCCCCcCCCCChHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCC--------------------CCH-HHHHH
Confidence            34445999999999999999999987          446777777654321                    121 23467


Q ss_pred             HHHHHHHHhccccCCCC---cccceeEeeeccCCCCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCCCCC
Q 014089           96 LEDYLPVLLGLVKDGSQ---LQYKVQFVWVNQEDEAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSADGYQPKV  172 (431)
Q Consensus        96 l~~Yl~~L~~l~~~~~~---~~~~v~F~W~ds~~~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~~g~~~~~  172 (431)
                      |.+||.+|..+..+++.   ...+|.|+|+|+|++ ++++++|++||++||||||||+ ||++|+.          ++|.
T Consensus        70 L~~Yy~qL~~l~~rfp~~~~~~~~i~F~W~ds~~~-~~~~~~sl~fE~a~VLfNiaal-~s~~a~~----------~~r~  137 (363)
T 3rau_A           70 LRKYLGQLHYLQSRVPMGSGQEAAVPVTWTEIFSG-KSVAHEDIKYEQACILYNLGAL-HSMLGAM----------DKRV  137 (363)
T ss_dssp             HHHHHHHHHHHHHHSCCSTTCTTCCCEEEECTTTC-CEEEESCHHHHHHHHHHHHHHH-HHHHHHH----------SCCC
T ss_pred             HHHHHHHHHHHHhcCCCCcccccceeEEeecccCC-ccccccCHHHHHHHHHHHHHHH-HHHHHHH----------hccC
Confidence            99999999887544322   135899999999987 5899999999999999999966 6888732          4778


Q ss_pred             ChHhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcccchHHHHHH
Q 014089          173 SEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTKATLAVKRRL  252 (431)
Q Consensus       173 s~dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k~k~slIAKL  252 (431)
                      ++||+|.||++||+|||||+||++++.+.        +++||++++|.+|+.+||||||||+|+||+. +++++++||||
T Consensus       138 ~~~glK~A~~~fq~AAG~f~~l~~~~~~~--------~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~~k~~liAkL  208 (363)
T 3rau_A          138 SEEGMKVSCTHFQCAAGAFAYLREHFPQA--------YSVDMSRQILTLNVNLMLGQAQECLLEKSML-DNRKSFLVARI  208 (363)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHCCSC--------SSGGGSHHHHHHHHHHHHHHHHHHHHHHHHH-TTCCHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhcCCC--------CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCchhHHHHH
Confidence            99999999999999999999999998532        4569999999999999999999999999999 66789999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHHHHHHHHHHH
Q 014089          253 ACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAVAALQAADEY  329 (431)
Q Consensus       253 A~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaIa~L~~A~~~  329 (431)
                      |+|++++|++|++.+++.+....+   -.++.+| +++++|+..|    .+.+ ||+ +.+.+.++||++|+||+.|.+.
T Consensus       209 a~q~~~~Y~~a~~~l~~~~~~~~~---~~~~~~w~~~v~~K~~~~----~A~A~y~~a~~~~e~~k~GeaIa~L~~A~~~  281 (363)
T 3rau_A          209 SAQVVDYYKEACRALENPDTASLL---GRIQKDWKKLVQMKIYYF----AAVAHLHMGKQAEEQQKFGERVAYFQSALDK  281 (363)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHH---TTHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCcccccc---ccccHHHHHHHHHHHHHH----HHHHHHHHHHhHHHhhhHHHHHHHHHHHHHH
Confidence            999999999999999865421100   0256688 8888887555    3333 455 7888999999999999999999


Q ss_pred             HHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCcccccccccccCC
Q 014089          330 FKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALKPDEFQL  404 (431)
Q Consensus       330 l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vkp~~~~l  404 (431)
                      ++++.+.++.+        ...+.+.++.+.++|++.+++++||||||| ||+||+  +||+|++..| |||+||+.
T Consensus       282 l~~a~~~~k~~--------~~~~~~~~~~~~~~i~~~l~~aekdNd~IY-~~~VP~~~~L~~i~~~~l-vk~~p~~~  348 (363)
T 3rau_A          282 LNEAIKLAKGQ--------PDTVQDALRFTMDVIGGKYNSAKKDNDFIY-HEAVPALDTLQPVKGAPL-VKPLPVNP  348 (363)
T ss_dssp             HHHHHHHTTTC--------CHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CCCCCCGGGSCCCCCCCC-CCCCCCCT
T ss_pred             HHHHHHHhcCC--------chhHHHHHHHHHHHHHHHHHHHHhccCcCC-cccCCCccccCCCCCCcc-ccCCCCCc
Confidence            99999987631        223666778888999999999999999999 999996  8999999999 99998884

>2xs1_A Programmed cell death 6-interacting protein; protein transport-viral protein complex, cell cycle; 2.30A {Homo sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A 2ojq_A

Probab=100.00  E-value=1.2e-59  Score=513.61  Aligned_cols=323  Identities=21%  Similarity=0.234  Sum_probs=264.8

Q ss_pred             EEecCCCCCCcccccchHHhhHHHHHHH---H----------HHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHH
Q 014089           25 SVYVPGLRIPKPVDFSQSLGDNLSKNMV---E----------RLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLAD   91 (431)
Q Consensus        25 ~~~~p~lk~~~~vd~~~~l~~~I~~~~~---~----------~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~   91 (431)
                      .+.+| ||.|.+|||..||++||.++|.   +          +|+.+|++++...                 . ... +.
T Consensus        10 ~l~~p-lK~t~~vd~~~~l~~~I~~~y~~~~e~~~~~~~~l~~l~~lR~~~~~~~-----------------~-~~~-~~   69 (704)
T 2xs1_A           10 FISVQ-LKKTSEVDLAKPLVKFIQQTYPSGGEEQAQYCRAAEELSKLRRAAVGRP-----------------L-DKH-EG   69 (704)
T ss_dssp             CCCCC-CCCBCCCCSHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHHHHHTSC-----------------C-CCC-HH
T ss_pred             hhcCC-CCCCCcCCHHHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHHHHHhhCC-----------------C-CCC-HH
Confidence            56677 9999999999999999998865   4          5555665554321                 1 112 23


Q ss_pred             HHHHHHHHHHHHhccccCCCC--cccceeEeeeccCC------CCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCC
Q 014089           92 LHQALEDYLPVLLGLVKDGSQ--LQYKVQFVWVNQED------EAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRT  163 (431)
Q Consensus        92 ~~~~l~~Yl~~L~~l~~~~~~--~~~~v~F~W~ds~~------~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~  163 (431)
                      ..+.|.+||++|..+..+.+.  .+.+|.|+|+|+|+      ++.+++++|++||++|||||+||+ ||++|.    . 
T Consensus        70 ~~~~L~~Y~~~L~~l~~rfp~~~~~~~i~F~W~d~~~~~s~~~~~~~~~~~~l~fE~a~vLfNlaal-~s~~A~----~-  143 (704)
T 2xs1_A           70 ALETLLRYYDQICSIEPKFPFSENQICLTFTWKDAFDKGSLFGGSVKLALASLGYEKSCVLFNCAAL-ASQIAA----E-  143 (704)
T ss_dssp             HHHHHHHHHHHHHHHGGGSCTTTCSSCCCEEEECTTCCCSSSSSCCEEEECCHHHHHHHHHHHHHHH-HHHHHH----T-
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCCCcccceeeeecCcccccccCCCCceeeccHHHHHHHHHHHHHHH-HHHHHH----H-
Confidence            457799999999988655432  24689999999996      336889999999999999999965 688763    2 


Q ss_pred             CCCCCCCCCChHhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhhcc
Q 014089          164 SADGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDSTK  243 (431)
Q Consensus       164 ~~~g~~~~~s~dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~~k  243 (431)
                           +++.+++|+|.||++||+|||||+||+++++|.++.    .+++||++++|.+|+.+||||||||+|+||+. ++
T Consensus       144 -----~~r~~~~~lK~A~~~fq~AAG~f~~l~~~~l~~~~~----~~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~-~~  213 (704)
T 2xs1_A          144 -----QNLDNDEGLKIAAKHYQFASGAFLHIKETVLSALSR----EPTVDISPDTVGTLSLIMLAQAQEVFFLKATR-DK  213 (704)
T ss_dssp             -----SCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS----CCCGGGSHHHHHHHHHHHHHHHHHHHHHHHHH-TT
T ss_pred             -----hCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCC----CCCcccCHHHHHHHHHHHHHHHHHHHHHHHHh-cC
Confidence                 477899999999999999999999999999876543    46789999999999999999999999999999 67


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHH
Q 014089          244 ATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAV  320 (431)
Q Consensus       244 ~k~slIAKLA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaI  320 (431)
                      +++++|||||+|++++|++|.+.+...+         .+..+| +++++|+..|    .|.| ||+ +++.+.++||++|
T Consensus       214 ~k~~liAkLa~~~~~~Y~~A~~~l~~~~---------~~~~~w~~~v~~K~~~~----~A~A~y~~a~~~~e~~k~GeaI  280 (704)
T 2xs1_A          214 MKDAIIAKLANQAADYFGDAFKQCQYKD---------TLPKEVFPVLAAKHCIM----QANAEYHQSILAKQQYYFGEEI  280 (704)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHTCC---------CSCTTHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CChhHHHHHHHHHHHHHHHHHHHHcccc---------cccHHHHHHHHHHHHHH----HHHHHHHHHHHhHHHhHHHHHH
Confidence            8999999999999999999999998221         245578 7777777544    3333 555 8888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCccccccc
Q 014089          321 AALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALK  398 (431)
Q Consensus       321 a~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vk  398 (431)
                      +||+.|.++++++.+.++.+.         .    ++.+.++|++.+++++||||||| ||+||+  +||+|+++.| ||
T Consensus       281 a~L~~A~~~l~~a~~~~~~~~---------~----~~~l~~~i~~~l~~~~kdNd~IY-~e~VP~~~~L~~i~~~~l-vk  345 (704)
T 2xs1_A          281 ARLQHAAELIKTVASRYDEYV---------N----VKDFSDKINRALAAAKKDNDFIY-HDRVPDLKDLDPIGKATL-VK  345 (704)
T ss_dssp             HHHHHHHHHHHHHHHHSTTTC---------C----CHHHHHHHHHHHHHHHHHHHHTT-CCCCCCGGGSCCCCCCCC-CC
T ss_pred             HHHHHHHHHHHHHHHHhcchH---------h----HHHHHHHHHHHHHHHHHhhCeee-ccCCCCccccCCccCccc-cc
Confidence            999999999999998765432         1    45677789999999999999999 999996  8999999999 99


Q ss_pred             ccccCCCCCCCCCC
Q 014089          399 PDEFQLPPVHPSWT  412 (431)
Q Consensus       399 p~~~~lP~~~~~w~  412 (431)
                      |+||+.|. ++.|+
T Consensus       346 ~~~~~~p~-~~~~~  358 (704)
T 2xs1_A          346 STPVNVPI-SQKFT  358 (704)
T ss_dssp             CCCCCSCC-STTCC
T ss_pred             cCCCCccc-ccchh
Confidence            99999875 67775

>1zb1_A BRO1 protein; AIP1, BRO1 domain, SNF7, trafficking, protein transport; 1.95A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-60  Score=488.27  Aligned_cols=315  Identities=16%  Similarity=0.163  Sum_probs=255.9

Q ss_pred             EEecCCCCCCcccccchHHhhHHHHHHH------------H-HHHHHHHHHHHHhhhcCCccccccccccccCCCCCHHH
Q 014089           25 SVYVPGLRIPKPVDFSQSLGDNLSKNMV------------E-RLSALRTRIVVMAAQEGPTITRTRRKSATQHGGSTLAD   91 (431)
Q Consensus        25 ~~~~p~lk~~~~vd~~~~l~~~I~~~~~------------~-~l~~lR~~i~~~~~~~~~~~~~~~r~~~~~~~~s~~~~   91 (431)
                      .+.+| ||+|.+|||..||++||.++|.            . +|+.+|++++..                    .. -+.
T Consensus        10 ~l~~p-lK~t~~vd~~~~L~~~I~~~y~~~~~~~~y~~~l~~~l~~lR~~~~~~--------------------~~-~~~   67 (392)
T 1zb1_A           10 LFDLK-LKDTEKLDWKKGLSSYLKKSYGSSQWRTFYDEKATSELDHLRNNANGE--------------------LA-PSS   67 (392)
T ss_dssp             CCCCC-CCCBCCCCHHHHHHHHHHHHSCTTTGGGGCCHHHHHHHHHHHHHTTSS--------------------CC-HHH
T ss_pred             cccCC-CCCCCccCHHHHHHHHHHHHcCCCCchhhHHHHHHHHHHHHHHHhhcC--------------------CC-ChH
Confidence            45677 9999999999999999998774            4 666777764321                    11 145


Q ss_pred             HHHHHHHHHHHHhccccCCCC--cccceeEeeeccCC----CCccccccchHHHHHHHHHHHHHHHHHHHhhhhccCCCC
Q 014089           92 LHQALEDYLPVLLGLVKDGSQ--LQYKVQFVWVNQED----EAEETAISNAWYEVLSVLHLMAMLSLSQANLLLLPRTSA  165 (431)
Q Consensus        92 ~~~~l~~Yl~~L~~l~~~~~~--~~~~v~F~W~ds~~----~~~~~~~~sl~fEkasVLfNiaal~~sq~a~~la~~~~~  165 (431)
                      +++.|.+||++|.++..+.+.  .+.+|.|+|+|+|+    ++.+++++|++||++|||||+||+ ||++|+.       
T Consensus        68 ~~~~l~~Y~~~L~~l~~rf~~~~~~~~i~F~W~d~l~~~~~~~~~~~~~~l~fE~a~vLfNlaal-~s~~A~~-------  139 (392)
T 1zb1_A           68 LSEQNLKYYSFLEHLYFRLGSKGSRLKMDFTWYDAEYSSAQKGLKYTQHTLAFEKSCTLFNIAVI-FTQIARE-------  139 (392)
T ss_dssp             HHHHHHHHHHHHHHHHHHHGGGGGGGCCCEEEECCCCSSSCSSCEEEECCHHHHHHHHHHHHHHH-HHHHHHH-------
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCCCcccceeeeecccccccCCCCceeccchHHHHHHHHHHHHHH-HHHHHHH-------
Confidence            678899999999998544221  24789999999996    558899999999999999999955 6887732       


Q ss_pred             CCCCCCCChHhHHHHHHHHHHHHhHHHHHHHhhCCCCCcccccCCCCCCCHHHHHHHHHHHhHHHHHHHHHHhHhh--cc
Q 014089          166 DGYQPKVSEESRRASVDIFLKAAGYLDCAVRHVLPQMSPELRRELPVDLAEGDLRALCLQALGQGVDIQLGMAIDS--TK  243 (431)
Q Consensus       166 ~g~~~~~s~dglK~A~~~fq~AAG~F~~l~e~~l~~~~~~~~~~~~~DL~~~~L~aL~~lmLAQAQE~~~~KAi~~--~k  243 (431)
                         ++|.   |+|.||++||+|||||+||++++++.        +++||++++|.+|+.+||||||||+|+||+.+  ++
T Consensus       140 ---~~r~---~lk~A~~~fq~AAG~f~~l~~~~~~~--------~~~Dls~~~l~~L~~l~LAQAQE~~~~Kai~~~~~~  205 (392)
T 1zb1_A          140 ---NINE---DYKNSIANLTKAFSCFEYLSENFLNS--------PSVDLQSENTRFLANICHAEAQELFVLKLLNDQISS  205 (392)
T ss_dssp             ---TTTS---SSHHHHHHHHHHHHHHHHHHHHCCCC--------SSGGGCHHHHHHHHHHHHHHHHHHHHHHHTTSTTGG
T ss_pred             ---hchH---HHHHHHHHHHHHHHHHHHHHHhcCCC--------CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhccccC
Confidence               2333   79999999999999999999999753        35699999999999999999999999999984  47


Q ss_pred             cchHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccccchh-HHHHHHHHHhhhhhchHH-HHH-HhcCccchhHHHH
Q 014089          244 ATLAVKRRLACEMVKYWQQAQDNIMNLPLANGWGEKHKLFVKW-KYFEAKLLNILIVLVDQT-WFL-LLLPSEKFHGMAV  320 (431)
Q Consensus       244 ~k~slIAKLA~q~s~~Y~~A~~~l~~~~~~~~~~~k~~~~~~W-k~~~~Ka~a~~~~~~~~~-~~~-~~l~~~~k~GeaI  320 (431)
                      +++++|||||+|++++|++|.+.+++.+..  .  +..+..+| +++++|+..|    .|.+ ||+ ..+.++++||++|
T Consensus       206 ~k~~liAkLa~~~~~~Y~~a~~~l~~~~~~--~--~~~~~~~w~~~v~~K~~~~----~A~A~y~~a~~~~e~~k~GeaI  277 (392)
T 1zb1_A          206 KQYTLISKLSRATCNLFQKCHDFMKEIDDD--V--AIYGEPKWKTTVTCKLHFY----KSLSAYYHGLHLEEENRVGEAI  277 (392)
T ss_dssp             GCHHHHHHHHHHHHHHHHHHHHHHHSCCCT--T--TSSSCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHTTCTTHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhhcccc--c--cccccHHHHHHHHHHHHHH----HHHHHHHHHHHHHHccchHHHH
Confidence            899999999999999999999999977531  0  11356678 8888887554    3333 555 8888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCCCCCCchHHHHHHHHhhccchhhhhhcccccccCCCccCC--CCCCCCccccccc
Q 014089          321 AALQAADEYFKESKKACEAFNVAPPLSRNPPLWGTMKYLSEKIPKDTSSKVRINRDLYSYEKIME--TAPTLPDFALALK  398 (431)
Q Consensus       321 a~L~~A~~~l~~a~~~~~~~~~~~p~~~~~~~~~~~~~l~~~i~~~l~~a~kdNd~IY~hq~VP~--~lp~l~~~~l~vk  398 (431)
                      +||+.|.+.++++.+.++.+.        +.+  .++.+.++|++.+++++||||||| ||+||+  +||+|++..+ ||
T Consensus       278 a~L~~A~~~l~~a~~~~~~~~--------~~~--d~~~l~~~i~~~l~~a~kdNd~IY-~e~VP~~~~L~~i~~~~~-vk  345 (392)
T 1zb1_A          278 AFLDFSMQQLISSLPFKTWLV--------EFI--DFDGFKETLEKKQKELIKDNDFIY-HESVPAVVQVDSIKALDA-IK  345 (392)
T ss_dssp             HHHHHHHHHHHHHGGGCTTTT--------TTS--CHHHHHHHHHHHHHHHHHHHHSSS-CCCCCSSCCGGGSCCCCC-CC
T ss_pred             HHHHHHHHHHHHHHHhhhccc--------hHH--HHHHHHHHHHHHHHHHHHHhCccC-cCCCCCccccccCCCcCc-cc
Confidence            999999999999987754211        111  255888899999999999999999 999994  7999999999 99


Q ss_pred             ccccC
Q 014089          399 PDEFQ  403 (431)
Q Consensus       399 p~~~~  403 (431)
                      |+|++
T Consensus       346 ~~~~~  350 (392)
T 1zb1_A          346 SPTWE  350 (392)
T ss_dssp             CCCHH
T ss_pred             ccCCc
Confidence            99776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00