Citrus Sinensis ID: 014120

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
Protein Sequence
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQFSYKKKLTYEGETPSCCQSLPLSCWKHCIKEVKIECTEKYPIRQINRESFSSEDGDIMEKINDLWKSLLDMMILHSKIFAEYDGP
Secondary Structure (PSIPRED)
ccHHHHHHHHcccEEEEEEEccccEEEccccccccccEEEEEEEccEEcccccccccccccEEEEEEEEEcHHHHHHHHHcccccccccccccccccEEEEcccccccEEEEccccccccEEEEEcccccEEEEcccccccccccccccccEEEEEccccccHHHHHHHccccccccHHHHccccccEEEEEccccEEEEEEccccccEEEEcccccccEEEEcccccccccccccHHHHHHHcccccccHHHHHHHHHHHHcccccccEEEEEEcccccccccccccccccccccccccEEEEEcHHHHHHHHHHHHHHHcccccccEEEEEccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHccccEEEEEEccccccccccEEEEcccEEEEEEEEEEccccccccccccHEEEEEEEEEccHHHHHHHHHccccHEEEEEEEcccccEEEEccccccEEEEEEccccccEEEEEEccccccEEccccccccEEEccccccccEEEEccccccHHHHHHHHccccHHHEEEEcccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEcccccccccccccccHHEEHHccccccHHHHHHHHHHHHHcccccEEEEEEEcccEEEEEcccccccccccccccccEEEEccccccccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHHHHccccccccccccccccHEcccccEEEcccccEEHHHccHHHHHcccccHHccccHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MNRCLSYAFASNVKELKldvgccriynlPQIVFYLKSIYVldfefcklepprstvTLFSLRKLCLSFVHVDDEVIRDMVagcplieyininncpglkslqllglnklkeikldsnrcglervyingvnVHSVDIKVylepcevnvsscknlthlrldglsitDKWLYNQISELPFLEYLALHYCMKLRsinissprlKELVFERCEELVEfeldtpnlsifkCFNYVESFSSNALALSQTLLCFishpvdneWYLKFIKLLARFNLCSNvlnlqcnheavliprelreilcppltyhkhvSFSVLSEILEVSLANLVDCLLWitphaetlsiewpninfyeLSFQFSYKkkltyegetpsccqslplscwkHCIKEVKiectekypirqinresfssedgDIMEKINDLWKSLLDMMILHSKIFAEYDGP
Flexible Loop (DISEMBL)
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQFSYKKKLTYEGETPSCCQSLPLSCWKHCIKEVKiectekypirqinresfssedgdIMEKINDLWKSLLDMMILHSKIFAEYDGP
Low Complexity Region (SEG)
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGlkslqllglnklkEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQFSYKKKLTYEGETPSCCQSLPLSCWKHCIKEVKIECTEKYPIRQINRESFSSEDGDIMEKINDLWKSLLDMMILHSKIFAEYDGP
Disordered region (IsUnstruct)
***CLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQFSYKKKLTYEGETPSCCQSLPLSCWKHCIKEVKIECTEKYPIRQINRESF***DGDIMEKINDLWKSLLDMMILHSKIFAE****
Disordered Region (DISOPRED)
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQFSYKKKLTYEGETPSCCQSLPLSCWKHCIKEVKIECTEKYPIRQINRESFSSEDGDIMEKINDLWKSLLDMMILHSKIFAEYD**
Disordered Region (DISEMBL)
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQFSYKKKLTYEGETPSCCQSLPLSCWKHCIKEVKIECTEKYPIRQINRESFSSEDGDIMEKINDLWKSLLDMMILHSKIFAEYDGP
Disordered Region (DISPRO)
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQFSYKKKLTYEGETPSCCQSLPLSCWKHCIKEVKIECTEKYPIRQINRESFSSEDGDIMEKINDLWKSLLDMMILHSKIFAEYDGP
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQFSYKKKLTYEGETPSCCQSLPLSCWKHCIKEVKIECTEKYPIRQINRESFSSEDGDIMEKINDLWKSLLDMMILHSKIFAEYDGP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	430	2.2.26 [Sep-21-2011]
O80741	322	Probable F-box protein At	yes	no	0.225	0.301	0.326	3e-06
Q9LZ15	456	Putative F-box/LRR-repeat	yes	no	0.332	0.313	0.263	6e-06
Q9LSJ3	465	Putative F-box/LRR-repeat	no	no	0.255	0.236	0.293	2e-05
Q9LV26	456	Putative F-box/LRR-repeat	no	no	0.386	0.364	0.274	0.0001
Q9FX89	385	Putative F-box protein At	no	no	0.302	0.337	0.289	0.0001
Q84W80	481	F-box/LRR-repeat protein	no	no	0.451	0.403	0.251	0.0003
Q9LYZ2	469	Putative F-box/LRR-repeat	no	no	0.339	0.311	0.263	0.0006
Q9Y2K7	1162	Lysine-specific demethyla	yes	no	0.288	0.106	0.321	0.0007
P59997	1161	Lysine-specific demethyla	yes	no	0.288	0.106	0.321	0.0007

>sp|O80741|FB351_ARATH Probable F-box protein At1g60180 OS=Arabidopsis thaliana GN=At1g60180 PE=4 SV=1

 Score = 53.9 bits (128), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 1/98 (1%)

Query: 51  PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEI 110
           PR +V+  SL+KL L F  + DE I  +++GCP++E + +++C  L  L L    +L+ +
Sbjct: 29  PRCSVSWTSLKKLSLRFCELSDECIAKILSGCPILESLTLSHCIYLTVLDLSKSLRLRTL 88

Query: 111 KLDSNRCGLERVYINGVNVHSVDIKVYLEPCE-VNVSS 147
           ++  N        I   ++H + +K Y  PC  V+VSS
Sbjct: 89  EIACNIDNTRPRQIVAPHIHRLRLKTYQSPCALVDVSS 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LZ15|FBL78_ARATH Putative F-box/LRR-repeat protein At5g02700 OS=Arabidopsis thaliana GN=At5g02700 PE=4 SV=1

 Score = 52.8 bits (125), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 71/148 (47%), Gaps = 5/148 (3%)

Query: 5   LSYAFASNVKELKL---DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSL 60
           + +A + NV+ L +   D    + Y  P I +   S+ +LD      +  P  TV+  SL
Sbjct: 111 IEFALSRNVQNLSVFVRDFTYSKTYRFPDIFYLSSSLKLLDVTLDFFDMIPTCTVSWKSL 170

Query: 61  RKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLE 120
           R L L F  + DE I ++++GCP++E + ++ C  L+ L L     L+ + ++       
Sbjct: 171 RNLTLRFCQIPDESIHNILSGCPILESLTLDTCRLLERLDLSKSPNLRRLDINQQYRRTG 230

Query: 121 RVYINGVNVHSVDIKVYLEPCE-VNVSS 147
            V I   +++ + +     P   V+VSS
Sbjct: 231 PVAIVAPHIYYLRLTYSSTPSTIVDVSS 258

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSJ3|FBL48_ARATH Putative F-box/LRR-repeat protein At3g28410 OS=Arabidopsis thaliana GN=At3g28410 PE=4 SV=2

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 58/116 (50%), Gaps = 6/116 (5%)

Query: 5   LSYAFASNVKELKL---DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSL 60
           + +A + NV+ L +   D    + Y  P I +   S+  LD      +  P   V+  SL
Sbjct: 112 IEFALSRNVQNLSVFVRDFTYTKTYRFPDIFYISSSLKQLDVTLDFFDMIPTCAVSWKSL 171

Query: 61  RKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNR 116
           R L L F  + DE + ++++GCP++E + ++ C  L+ L L     L+  +LD NR
Sbjct: 172 RNLTLRFCQIPDESMHNILSGCPILESLTLDTCRLLERLDLSKSPNLR--RLDINR 225

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LV26|FBL45_ARATH Putative F-box/LRR-repeat protein At3g18150 OS=Arabidopsis thaliana GN=At3g18150 PE=4 SV=2

 Score = 48.5 bits (114), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 51/186 (27%), Positives = 90/186 (48%), Gaps = 20/186 (10%)

Query: 5   LSYAFASNVKELKLDV--GCCRIYNLPQIVFYLKS-----IYVLDFEFCKLEPPRSTVTL 57
           + +A + NV  L LD+       +  P   F++ S       VLDF          T+  
Sbjct: 117 IKFAMSRNVDHLSLDLWNQVANKFKFPDF-FHINSSLKQLTVVLDFS--------DTMIA 167

Query: 58  FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSN-- 115
             L+KL LS   + DE + +++ GCP++E + +++C GL+ L L    +L+ ++++ N  
Sbjct: 168 ICLKKLYLSTCLLSDESMANILFGCPILESLTLDHCGGLRVLDLSKSLRLRTLEINCNIW 227

Query: 116 RCGLERVYINGVNVHSVDIKVYLEPCE-VNVSSCKNLT-HLRLDGLSITDKWLYNQISEL 173
              L  + I   + H + ++    PC  V+VSS K    ++ +D  S T K  + Q++ L
Sbjct: 228 VPELTAMQIVAPHTHCLRLRNSKLPCSLVDVSSLKEAKLNICIDSFSKTIKADFLQVTLL 287

Query: 174 PFLEYL 179
             LE L
Sbjct: 288 KMLEKL 293

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FX89|FB50_ARATH Putative F-box protein At1g49610 OS=Arabidopsis thaliana GN=At1g49610 PE=4 SV=2

 Score = 48.1 bits (113), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/138 (28%), Positives = 71/138 (51%), Gaps = 8/138 (5%)

Query: 1   MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSI--YVLDFEFCKLEPPRSTVTLF 58
           ++  + +A + NV+ L L     R+Y++P  ++   S+   VL  E  +L P R +V+  
Sbjct: 109 IDGWIKFAMSRNVENLFLSFDF-RLYDVPDYLYINSSVKQLVLGTESSELNP-RCSVSWS 166

Query: 59  SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCG 118
           SL KL L      DE I  +++GCP+IE + ++ C  L  L L     LK +++  +  G
Sbjct: 167 SLTKLSL----FSDESIAKILSGCPIIESLTLHFCDQLMVLDLTKSPSLKILEIHGSIWG 222

Query: 119 LERVYINGVNVHSVDIKV 136
               +I   ++HS+ +K 
Sbjct: 223 SGPKHIVAPHIHSLTLKT 240

Arabidopsis thaliana (taxid: 3702)

>sp|Q84W80|FBL42_ARATH F-box/LRR-repeat protein At3g03360 OS=Arabidopsis thaliana GN=At3g03360 PE=2 SV=2

 Score = 46.6 bits (109), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 56/223 (25%), Positives = 108/223 (48%), Gaps = 29/223 (13%)

Query: 5   LSYAFASNVKELKLDVGCCRIYNLPQIVFY---LKSIYVLDF----EFCKLEPPRSTVTL 57
           +++A + NV+ L L +   + Y++P+ ++    LK +Y LDF    +F  L P + +V+ 
Sbjct: 130 INFAMSRNVENLSLYLDEDK-YDIPEFLYINSSLKQLY-LDFGCKKDFISLNP-KCSVSW 186

Query: 58  FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC 117
            SL+ L L   ++ DE I  +++GCP++E + +  C  LK L L    +L  +++ + RC
Sbjct: 187 TSLKNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEI-TRRC 245

Query: 118 GLERVYINGVNVHSVDIKVYLEPCE-VNVSSCKNLTHLRLDGLSITDKWL---YNQISEL 173
            +E   +   ++  + +    +PC  V+VSS      L +   +I D  L   ++Q   +
Sbjct: 246 RMEPTQLVAPHIRCLRLINSEKPCALVDVSSLSQ-AELDITAYAIVDNKLEADFHQTMVV 304

Query: 174 PFLE-------------YLALHYCMKLRSINISSPRLKELVFE 203
             LE             +L +    +LR ++    + K L+ E
Sbjct: 305 KMLEKCQNVEKLTLGANFLKMLSLAELRGVSFPKLKAKALILE 347

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYZ2|FBL80_ARATH Putative F-box/LRR-repeat protein At5g02930 OS=Arabidopsis thaliana GN=At5g02930 PE=4 SV=1

 Score = 45.8 bits (107), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/152 (26%), Positives = 74/152 (48%), Gaps = 6/152 (3%)

Query: 1   MNRCLSYAFASNVKELKLDVG-CCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFS 59
           +N  + +A + NV +L L    C   YN     +   S+  ++  +  L P R  V+  S
Sbjct: 112 VNSSIEFAMSHNVDDLSLAFRRCSPFYNFDDCFYTNSSLKRVELRYVDLMP-RCMVSWTS 170

Query: 60  LRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQL---LGLNKLKEIKLDSNR 116
           L+ L L+   + DE   ++++GCP++E +++  C  LK L L   L L +L+  ++   R
Sbjct: 171 LKNLSLTDCTMSDESFLEILSGCPILESLSLKFCMSLKYLNLSKSLRLTRLEIERISYIR 230

Query: 117 CGLERVYINGVNVHSVDIKVYLEPCE-VNVSS 147
             +  + I    +H + ++     C  V+VSS
Sbjct: 231 APMLSMQIVAPYIHYLRLRDSEAHCTFVDVSS 262

Arabidopsis thaliana (taxid: 3702)

>sp|Q9Y2K7|KDM2A_HUMAN Lysine-specific demethylase 2A OS=Homo sapiens GN=KDM2A PE=1 SV=3

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 61/140 (43%), Gaps = 16/140 (11%)

Query: 90   INNCPGLKSLQLLGLNKLKEIKLDSNRCGLER-------VYINGVNVHSVDIKVYLEPCE 142
            +N  PGLK L L G +      L ++ C L R       V I    +  +      +P +
Sbjct: 973  VNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPADKPGQ 1032

Query: 143  VNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKL--RSINI-----SSP 195
             N S  +N+T  RL GL ITD  L   I  +P L  L L +C  L  +S N+     SS 
Sbjct: 1033 DNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQSSNLLTAVGSST 1092

Query: 196  R--LKELVFERCEELVEFEL 213
            R  L EL    C +L +  L
Sbjct: 1093 RYSLTELNMAGCNKLTDQTL 1112

Histone demethylase that specifically demethylates 'Lys-36' of histone H3, thereby playing a central role in histone code. Preferentially demethylates dimethylated H3 'Lys-36' residue while it has weak or no activity for mono- and tri-methylated H3 'Lys-36'. May also recognize and bind to some phosphorylated proteins and promote their ubiquitination and degradation. Required to maintain the heterochromatic state. Associates with centromeres and represses transcription of small non-coding RNAs that are encoded by the clusters of satellite repeats at the centromere. Required to sustain centromeric integrity and genomic stability, particularly during mitosis.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 7

>sp|P59997|KDM2A_MOUSE Lysine-specific demethylase 2A OS=Mus musculus GN=Kdm2a PE=1 SV=2

 Score = 45.8 bits (107), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 45/140 (32%), Positives = 61/140 (43%), Gaps = 16/140 (11%)

Query: 90   INNCPGLKSLQLLGLNKLKEIKLDSNRCGLER-------VYINGVNVHSVDIKVYLEPCE 142
            +N  PGLK L L G +      L ++ C L R       V I    +  +      +P +
Sbjct: 972  VNRLPGLKDLLLAGCSWSAVSALSTSSCPLLRTLDLRWAVGIKDPQIRDLLTPPTDKPGQ 1031

Query: 143  VNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKL--RSINI-----SSP 195
             N S  +N+T  RL GL ITD  L   I  +P L  L L +C  L  +S N+     SS 
Sbjct: 1032 DNRSKLRNMTDFRLAGLDITDATLRLIIRHMPLLSRLDLSHCSHLTDQSSNLLTAVGSST 1091

Query: 196  R--LKELVFERCEELVEFEL 213
            R  L EL    C +L +  L
Sbjct: 1092 RYSLTELNMAGCNKLTDQTL 1111

Histone demethylase that specifically demethylates 'Lys-36' of histone H3, thereby playing a central role in histone code. Preferentially demethylates dimethylated H3 'Lys-36' residue while it has weak or no activity for mono- and tri-methylated H3 'Lys-36'. May also recognize and bind to some phosphorylated proteins and promote their ubiquitination and degradation. Required to maintain the heterochromatic state. Associates with centromeres and represses transcription of small non-coding RNAs that are encoded by the clusters of satellite repeats at the centromere. Required to sustain centromeric integrity and genomic stability, particularly during mitosis.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: 4

EC: .

EC: 1

EC: 1

EC: .

EC: 2

EC: 7

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
449476923	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.818	0.750	0.357	1e-51
449458247	469	PREDICTED: putative F-box/FBD/LRR-repeat	0.818	0.750	0.357	1e-51
147833276	521	hypothetical protein VITISV_011919 [Viti	0.832	0.687	0.31	4e-30
224119688	563	f-box family protein [Populus trichocarp	0.918	0.701	0.290	4e-27
225442254	520	PREDICTED: putative F-box protein At3g44	0.862	0.713	0.298	9e-25
297743071	552	unnamed protein product [Vitis vinifera]	0.862	0.672	0.298	1e-24
255549680	514	hypothetical protein RCOM_1485780 [Ricin	0.676	0.566	0.346	3e-23
255553895	516	hypothetical protein RCOM_1176360 [Ricin	0.823	0.686	0.263	6e-22
224124628	524	f-box family protein [Populus trichocarp	0.676	0.555	0.281	1e-21
224121624	528	predicted protein [Populus trichocarpa]	0.802	0.653	0.280	2e-21

>gi|449476923|ref|XP_004154877.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  210 bits (535), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 196/358 (54%), Gaps = 6/358 (1%)

Query: 1   MNRCLSYAFASNVKELKLDVGC--CRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLF 58
           ++R + Y   S V+EL++ V     + YNLPQ VF  +S+ VL    CKL P      L 
Sbjct: 96  VDRWIDYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLL 155

Query: 59  SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCG 118
           S++ + L  V  +DE ++ +V+ CP I++I +++C GL++L L   N+L  +++ +N  G
Sbjct: 156 SMKSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRNLWLCETNELITMEVQNN-SG 214

Query: 119 LERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY 178
           L       +N+ + + +   +PC +N+SSCKNL  L+L  ++ITD W     SE P LE 
Sbjct: 215 LYEFGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEI 274

Query: 179 LALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALS 238
           LAL YC  L S+ ISS  LK+ +   CE +   ++DTP LS  +    V SFS NA ALS
Sbjct: 275 LALSYCHMLESLRISSSHLKKFILCGCESVTRVDIDTPCLSGLEFSGDVISFSLNAPALS 334

Query: 239 QTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHK 298
           Q  +       DN W +K I+ LA FN   ++       ++V+IP+ELRE    PL   K
Sbjct: 335 QADIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRETFGSPLYGVK 394

Query: 299 HVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQFSYKKKLTYEG 356
           H+   ++  +   SL +LV  LLWI P  +T+++E     F +   +F Y+K     G
Sbjct: 395 HLKLRIIKPLFSPSLKDLVKALLWIAPQPQTIAVE---SGFGKKILKFVYEKARDDGG 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449458247|ref|XP_004146859.1| PREDICTED: putative F-box/FBD/LRR-repeat protein At1g78840-like [Cucumis sativus]

 Score =  210 bits (534), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/358 (35%), Positives = 195/358 (54%), Gaps = 6/358 (1%)

Query: 1   MNRCLSYAFASNVKELKLDVGC--CRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLF 58
           ++R + Y   S V+EL++ V     + YNLPQ VF  +S+ VL    CKL P      L 
Sbjct: 96  VDRWIDYVLESGVQELEIVVTVENGKRYNLPQRVFANQSLTVLTVGDCKLCPSLDGYKLL 155

Query: 59  SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCG 118
           S++ + L  V  +DE ++ +V+ CP I++I +++C GL+SL L   N+L  +++ +N  G
Sbjct: 156 SMKSVSLLGVFAEDETVKRLVSNCPFIQHIKLDSCLGLRSLWLCETNELITMEVQNN-SG 214

Query: 119 LERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY 178
           L       +N+ + + +   +PC +N+SSCKNL  L+L  ++ITD W     SE P LE 
Sbjct: 215 LYEFGTKAMNLQAFEFRGQFQPCCINISSCKNLKTLKLSMVAITDDWFNRCFSEFPLLEI 274

Query: 179 LALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALS 238
           LAL YC  L S+ ISS  LK+ +   CE +   ++D P LS  +    V SFS NA ALS
Sbjct: 275 LALSYCHMLESLRISSSHLKKFILCGCESVTRVDIDAPCLSGLEFSGDVISFSLNAPALS 334

Query: 239 QTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHK 298
           Q  +       DN W +K I+ LA FN   ++       ++V+IP+ELRE    PL   K
Sbjct: 335 QADIELSPRIFDNPWVVKQIEFLAHFNHLKSLTLQSQTGKSVVIPQELRETFGSPLYGVK 394

Query: 299 HVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQFSYKKKLTYEG 356
           H+   ++  +   SL +LV  LLWI P  +T+++E     F +   +F Y+K     G
Sbjct: 395 HLKLRIIKPLFSPSLKDLVKALLWIAPQPQTIAVE---SGFGKKILKFVYEKARDDGG 449

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833276|emb|CAN68530.1| hypothetical protein VITISV_011919 [Vitis vinifera] gi|297743067|emb|CBI35934.3| unnamed protein product [Vitis vinifera]

 Score =  138 bits (348), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 124/400 (31%), Positives = 199/400 (49%), Gaps = 42/400 (10%)

Query: 5   LSYAFASNVKELKLDV---GCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLR 61
           +  A    VKEL L +      + Y LP  +F   +I VL  E C+LE     + L +LR
Sbjct: 109 IDAALERKVKELDLYLRPRSIAKPYGLPAKIFSTTTITVLSLEQCRLEIC-GDIDLPALR 167

Query: 62  KLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC--GL 119
           KLCL  +  D++ IR +++ CPLIE ++I +C GL+ L + GL  L  +++    C   L
Sbjct: 168 KLCLRQIRCDEQAIRQLISSCPLIEDLDIASCGGLQKLHVSGLANLHRLEVI---CCYNL 224

Query: 120 ERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYL 179
            R+ I+  ++  +       PC++ ++ C+ L  L L    IT+ +L N  S  P LE L
Sbjct: 225 RRIEIDAPSLQHLVYHCGRLPCDMVLTPCEFLRELILHDPHITNDFLQNLDSGFPNLERL 284

Query: 180 ALHYCMKLRSINISSPRLK--ELVFERCEELVEFELDTPNLSIFKCFNYVESFSS----- 232
            +    +L+ I IS  +LK  EL     ++  + ++D PNL  F    Y    +S     
Sbjct: 285 EID-STRLQRIEISHHQLKRLELKLTPLQKEAKLKIDAPNLQSFTYSGYRMPLTSTISSM 343

Query: 233 NALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCS---NVLNLQC-NHEAVLIPRELRE 288
           N  +L +  + F ++   N++   FI  L  F   S    V+NL   + E ++IPR+LR 
Sbjct: 344 NTSSLREAEIHFRNY---NDYSHFFIPQLKEFFEKSKNCQVINLLIKSKEELIIPRKLRP 400

Query: 289 ILCPPLTYHKHVSFSVLSEILEVSLAN----LVDCLLWITPHAETLSI-EWPNINFYELS 343
           IL PP+   KH+        L VS  +    ++D +LW+  H +TLSI    N+ F ++ 
Sbjct: 401 ILSPPVYDIKHL-------YLRVSYCSRFQYIIDRMLWMC-HPQTLSILSGTNVRFLKVL 452

Query: 344 FQFSYKKKLTYEGETPSCCQSLPLSCWKHCIKEVKIECTE 383
           +      K   + E P CC S  + CW+H +K+V+I+  E
Sbjct: 453 YN-----KFRNKEENPKCCTSCSIKCWRHYLKDVQIDSDE 487

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224119688|ref|XP_002318135.1| f-box family protein [Populus trichocarpa] gi|222858808|gb|EEE96355.1| f-box family protein [Populus trichocarpa]

 Score =  129 bits (323), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 124/427 (29%), Positives = 208/427 (48%), Gaps = 32/427 (7%)

Query: 5   LSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEF-CKLEPPRSTVTLFSLRKL 63
           L  A    V E  L+      Y LP+ +   + I VL      KL  PR  +   SLR L
Sbjct: 141 LELATKCGVYEFDLNFQNISHYCLPRALLSAEEITVLRLNGNYKLSLPRDAINWPSLRVL 200

Query: 64  CLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVY 123
            L  V VD+ ++++++ GCPLIE + +  C G+KS+++ G  KLKE++++     LER+ 
Sbjct: 201 SLMNVRVDEAILQNLICGCPLIEKLALVYCYGVKSIRISGCIKLKEVEVNEGDSVLERME 260

Query: 124 INGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITD---KWLYNQISELPFLEY 178
           I+  ++ +      L      ++++ C+NL  L+L   +IT+   +   + I++ P L+ 
Sbjct: 261 IHVPSLRTFCYTTGLVKSFFHIDMTGCRNLELLKLKFYNITEVIGQVFQDLIAQFPALKV 320

Query: 179 LALH-YCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYV--ESFSSNAL 235
           LAL+ Y   +  I IS+P+L++L       L +  + +P+L  FK F Y    +FS +  
Sbjct: 321 LALNCYATSVSRIKISNPQLEKLQLW-SSALTKVTITSPSLHSFKHFTYGFPSAFSLDQS 379

Query: 236 ALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAV-LIPRELREILCPPL 294
           +L +  L      + +  +L+  + L  FN     L L+ N+  +  IP  L  I  P L
Sbjct: 380 SLQKATLHVHKGALYSSDFLQLREYLGNFNQIRR-LTLRINYVGIRFIPETLNNISIPAL 438

Query: 295 TYHKHVSFSVL-SEILEVSLANL------VDCLLWITPHAETLSI--EWPNINFYELSFQ 345
              KH+   +  S     SLANL      VD LLW+  H ET+ +   W + N     F 
Sbjct: 439 PDIKHLKLKICPSTGASGSLANLKDYRDIVDGLLWVC-HPETILLISGWSSENL----FI 493

Query: 346 FSYKKKLTYEGETPSCCQSLPLSCWKHCIKEVKIECTEKYPIRQINRESFSSEDGDIMEK 405
               +KL   GE   CC S  + CW+H +K+++IE  ++      N E+ +   G ++E 
Sbjct: 494 QILCEKLMQGGEKQHCCTSSHIKCWRHDLKDIQIEHLQR------NAEAKAFTCGTLLES 547

Query: 406 INDLWKS 412
           + +L + 
Sbjct: 548 LPNLARG 554

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442254|ref|XP_002275641.1| PREDICTED: putative F-box protein At3g44060 [Vitis vinifera]

 Score =  120 bits (302), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 122/409 (29%), Positives = 196/409 (47%), Gaps = 38/409 (9%)

Query: 8   AFASNVKELKLDVGCCRI---YNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLC 64
           A    VKEL L +    I   Y LP  +F   +I VL  E C+LE     V L +LRKLC
Sbjct: 112 ALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEIC-GDVDLPALRKLC 170

Query: 65  LSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC--GLERV 122
           L  +  D++ IR +++ CPLIE ++I +C  LK L + GL  L  + +    C   L R+
Sbjct: 171 LRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVT---CCYNLRRI 227

Query: 123 YINGVNVH--SVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLA 180
            I+  ++     D +  L  C+V  +  + L  L L    IT+  L N +S +P LE L 
Sbjct: 228 EIDAPSLQYFMYDHQRSL-LCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLERLE 286

Query: 181 LHYCMKLRSINISSPRLK--ELVFERCEELVEFELDTPNLSIFKCFNYVESFSS-----N 233
           +    +L+ I IS  +LK  EL     +   + ++D PNL  F    Y    +S     N
Sbjct: 287 ID-STRLQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSMISSMN 345

Query: 234 ALALSQTLLCFIS-HPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCP 292
             +L +  + F + +   + + L+  +   +   C  +  L  + E ++IPR+LR I  P
Sbjct: 346 TSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSKEELIIPRKLRPIPSP 405

Query: 293 PLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQFSYKKKL 352
           P+   KH+   V           ++D +LW+  H +TLSIE        L  +FS K+  
Sbjct: 406 PVYDIKHLHLIVY---YCSRFQYIIDRMLWMC-HPQTLSIETSAKFLKVLYNKFSNKE-- 459

Query: 353 TYEGETPSCCQSLPLSCWKHCIKEVKIECTEK-------YPIRQINRES 394
               E P CC S P  CW+H +++V+I+  E        + +R+++++S
Sbjct: 460 ----ENPKCCTSCPTKCWRHYLEDVQIDGDESRLEIDQIFAMRELSKKS 504

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743071|emb|CBI35938.3| unnamed protein product [Vitis vinifera]

 Score =  120 bits (302), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 122/409 (29%), Positives = 196/409 (47%), Gaps = 38/409 (9%)

Query: 8   AFASNVKELKLDVGCCRI---YNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLC 64
           A    VKEL L +    I   Y LP  +F   +I VL  E C+LE     V L +LRKLC
Sbjct: 144 ALERKVKELDLYLLPRSIPEPYGLPAKIFSTTTITVLSLEQCRLEIC-GDVDLPALRKLC 202

Query: 65  LSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC--GLERV 122
           L  +  D++ IR +++ CPLIE ++I +C  LK L + GL  L  + +    C   L R+
Sbjct: 203 LRKILCDEQAIRQLISSCPLIEDLDIVSCGKLKKLHVSGLANLHRLVVT---CCYNLRRI 259

Query: 123 YINGVNVH--SVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLA 180
            I+  ++     D +  L  C+V  +  + L  L L    IT+  L N +S +P LE L 
Sbjct: 260 EIDAPSLQYFMYDHQRSL-LCDVVWTPGEFLRELILHDRHITNDLLQNLVSGVPNLERLE 318

Query: 181 LHYCMKLRSINISSPRLK--ELVFERCEELVEFELDTPNLSIFKCFNYVESFSS-----N 233
           +    +L+ I IS  +LK  EL     +   + ++D PNL  F    Y    +S     N
Sbjct: 319 ID-STRLQRIEISHHQLKRLELRLSEWQREAKLKIDAPNLQSFTYLGYRMPLTSMISSMN 377

Query: 234 ALALSQTLLCFIS-HPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCP 292
             +L +  + F + +   + + L+  +   +   C  +  L  + E ++IPR+LR I  P
Sbjct: 378 TSSLREAEIHFRNCNDYSHFFILQLKEFFEKSKNCQVINLLIKSKEELIIPRKLRPIPSP 437

Query: 293 PLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYELSFQFSYKKKL 352
           P+   KH+   V           ++D +LW+  H +TLSIE        L  +FS K+  
Sbjct: 438 PVYDIKHLHLIVY---YCSRFQYIIDRMLWMC-HPQTLSIETSAKFLKVLYNKFSNKE-- 491

Query: 353 TYEGETPSCCQSLPLSCWKHCIKEVKIECTEK-------YPIRQINRES 394
               E P CC S P  CW+H +++V+I+  E        + +R+++++S
Sbjct: 492 ----ENPKCCTSCPTKCWRHYLEDVQIDGDESRLEIDQIFAMRELSKKS 536

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549680|ref|XP_002515891.1| hypothetical protein RCOM_1485780 [Ricinus communis] gi|223544796|gb|EEF46311.1| hypothetical protein RCOM_1485780 [Ricinus communis]

 Score =  116 bits (290), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/320 (34%), Positives = 163/320 (50%), Gaps = 29/320 (9%)

Query: 74  VIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC-GLERVYINGVNVHSV 132
           +I++++  CPLI+ + +  C GLK+L LL  NKL   ++D + C GL+ V +   N+ + 
Sbjct: 1   MIQNLMLSCPLIDDLRLIYCTGLKTL-LLSSNKL--YRVDIHFCHGLKNVEVLSPNLQTF 57

Query: 133 DIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN 191
                    C++N++ CK+L  L L+  +++D W  N +S    +E L L  C  LR I 
Sbjct: 58  WYHGKKSTRCKINLAMCKDLKSLTLEDANMSDDWFQNLLSNFSLIEQLILSKCNALRHIT 117

Query: 192 ISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSS-NALALSQTLLCFISHPV- 249
           IS   LK+L    C EL E ++DTPNL  F+       FSS N  +L +  L F S  + 
Sbjct: 118 ISGRWLKKLALMECRELTEADIDTPNLLSFEYRGQKMPFSSLNPFSLKEAKLYFESSRLQ 177

Query: 250 -DNEWYLKFIKL---LARFNLCSNVLNLQC-NHEAVLIPRELREILCPPLTYHKHVSFSV 304
            DN   L F +L   L RF+ CS  L L   +++ V+I  +LREIL P +       F V
Sbjct: 178 PDNGGQLLFYELRNFLHRFD-CSKSLKLVIRSNKDVIIHEDLREILVPEI-------FDV 229

Query: 305 LSEILE--VSLANLVDCLLWITPHAETLSIEWPNINFYELSFQFSYKKKLTYEGETPSCC 362
             EI++   SL  ++D LL  T H ETLSI    I+     F      KL    +  SCC
Sbjct: 230 KLEIIKPSTSLEVILDSLL-RTWHPETLSIVSSTIS----DFPEQAHMKLADRRQAASCC 284

Query: 363 --QSLPLSCWKHCIKEVKIE 380
              +L   CW+H + +V  E
Sbjct: 285 NYNTLNNKCWRHFLMDVTTE 304

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553895|ref|XP_002517988.1| hypothetical protein RCOM_1176360 [Ricinus communis] gi|223542970|gb|EEF44506.1| hypothetical protein RCOM_1176360 [Ricinus communis]

 Score =  111 bits (278), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 185/399 (46%), Gaps = 45/399 (11%)

Query: 1   MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSL 60
           ++  + YA  + VKE+ LD       ++PQ+   +K +Y   +          ++T+  L
Sbjct: 99  LDAVIDYAIQNFVKEVDLDFR----NDIPQLYPTMKDLYFSYYPLPSRVLASKSITILKL 154

Query: 61  RKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDS------ 114
           +   ++         RD++    ++ Y+++ +C G++SL++   ++L  I ++S      
Sbjct: 155 KGFKMA--------PRDLILTSSVLRYLSLEHCTGMESLKVF-CDQLSLIHVESCVGPKQ 205

Query: 115 ---NRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQIS 171
                  LE  Y  G      +    LE  E   S+CK+L HL LD + ITD+WL N +S
Sbjct: 206 IELVTPYLETFYFIG------EEGSQLELSEDTFSTCKSLKHLNLDRVKITDQWLENLVS 259

Query: 172 E-LPFLEYLALHYCMKLRSINISSPRLKELVFERC-EELVEFELDTPNLSIFKC-FNYVE 228
           E   FLE + L  C  L+ + IS   LK    ++C E+L E E+D   L  F C  NY  
Sbjct: 260 EDFAFLENVRLSGCNTLKKLMISHSNLKYFELDQCSEQLEEVEIDARKLDTFACGINYGA 319

Query: 229 SFSSNAL------ALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQC-NHEAVL 281
                 +       L + +L   +    + W+     +L+    C   L L C + E ++
Sbjct: 320 VMDKQPICLPIHSPLVKVILLLDTSSTTSNWFSFLRDVLSFLGHCRE-LKLVCKSEEDLI 378

Query: 282 IPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIEWPNINFYE 341
           +P ++R  L  PL   +++   + + I +  L + V  LLW+ PH +T++I     +  E
Sbjct: 379 VPEDMRGSLLSPLHDLRNLKVEINNPISQ--LPDFVGSLLWLAPHPDTVTIV---CDSEE 433

Query: 342 LSFQFSYKKKLTYEGETPSCCQSLPLSCWKHCIKEVKIE 380
            S +F Y   +  E +   CC   P+ CW+H +KE+ +E
Sbjct: 434 KSLKFKY-SLVKNEVKDVFCCHLKPILCWRHNLKELTME 471

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224124628|ref|XP_002319379.1| f-box family protein [Populus trichocarpa] gi|222857755|gb|EEE95302.1| f-box family protein [Populus trichocarpa]

 Score =  110 bits (276), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 162/341 (47%), Gaps = 50/341 (14%)

Query: 7   YAFASNVKELKLD-VG----CCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLR 61
           YA  +NVKEL+LD VG    C   Y+LP  V   +S+ VL  +   LEPP++ V  F   
Sbjct: 128 YAIENNVKELELDFVGKSFKCMAHYSLPMKVLSAQSVMVLSLKGFMLEPPQNLVLDF--- 184

Query: 62  KLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLER 121
                                P I+ + +  C G+++L +     LK + L+S +  LE+
Sbjct: 185 ---------------------PFIKELRLEKCKGMQTLSVSS-QTLKIVVLESCQ-RLEK 221

Query: 122 VYINGVNVHSVDIKVYL-EPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLA 180
           V I+  N+ S          C V++++CK+L +L L    ITD+W+ +++++   LE   
Sbjct: 222 VEIDASNLESFSFGGGANSSCSVDITACKSLEYLSLKNAEITDEWIKHEVAQFLRLEVFK 281

Query: 181 LHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIF---------KCFNYVESFS 231
           +  C  L + ++S+  LK +    C  L + E+ + +L+ F         + F Y  SF 
Sbjct: 282 VVGCRLLENFHVSNANLKTVELSDCSNLQKIEIYSRSLNTFVYGGQLMPSQVFIYSPSFH 341

Query: 232 SNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHE-AVLIPRELREIL 290
           +  ++LS      + HP+ ++W+  F   L+ F+ C   L + C+ E A+++P + R+ L
Sbjct: 342 AK-VSLS------VDHPLPHDWFSSFRDFLSCFDHCKE-LEIACSIEMALIVPIDSRDSL 393

Query: 291 CPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLS 331
            PPL   K++            L  L+D LLW  P    LS
Sbjct: 394 LPPLYDLKYLKVVAKFPTKSEDLVGLLDSLLWFAPRLTVLS 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121624|ref|XP_002330747.1| predicted protein [Populus trichocarpa] gi|222872523|gb|EEF09654.1| predicted protein [Populus trichocarpa]

 Score =  110 bits (274), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 101/360 (28%), Positives = 172/360 (47%), Gaps = 15/360 (4%)

Query: 26  YNLPQIVFYLKSIYVLDFEFCKLEPPRS-TVTLFSLRKLCLSFVHVDDEVIRDMVAGCPL 84
           Y++P  +F  KS+ VL    C ++   S  + L SL+KL L  V +DD ++R +V  CPL
Sbjct: 142 YSMPDAIFAAKSVTVLKLFGCNVKLEESFCIKLHSLQKLALKEVQMDDHLLRRIVTCCPL 201

Query: 85  IEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCE-- 142
           +E I++  C GLK +Q+  L +LK+ ++ S+    E V I   ++ S      +   +  
Sbjct: 202 LEDISLRFCWGLKKIQVFELLRLKKFEIYSHLSKPESVEIKSPSLESFHCSFTVRSVKPI 261

Query: 143 VNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVF 202
           V+V +C+ L  L L G  +T+  L + + +   LE L +  C  L+ + ISS RLK L  
Sbjct: 262 VSVDACQGLKSLILSGSFVTELLLQDLVPKFHVLESLRVGDCPVLKKVKISSWRLKSLEI 321

Query: 203 ERCEELVEFELDTPN-LSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLL 261
             CE +++ E++TPN LS   C + V     NA +    +   + + +D  WY+   + L
Sbjct: 322 HSCENIMDIEINTPNLLSCKYCGSVVPVSLINAPSCHWQVEFSLMNTLDILWYMTLKEFL 381

Query: 262 ARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTY-HKHVSFSVLSEILEVSLANLVDCL 320
           A+ N     L++      ++    L ++      Y   +V  +V S    ++ AN +D L
Sbjct: 382 AKLNQLV-YLHVYVYLTTIMSSLNLEDLSNNASPYVVDNVVLTVHSASPIMTYANFMDGL 440

Query: 321 LWITPHAETLSIEWPNINFYELSFQFSYKKKL-TYEGETPSCCQSLPLSCWKHCIKEVKI 379
            + +           N+       Q  Y + L  +     SCC    + CW+H +KEVK+
Sbjct: 441 FFFSRPK--------NLFIRSTDEQKRYVEYLCGFSKRALSCCNHRKVKCWRHDLKEVKL 492

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
TAIR|locus:2099644	481	AT3G03360 [Arabidopsis thalian	0.439	0.392	0.230	7.5e-05
TAIR|locus:2151316	456	AT5G02700 "AT5G02700" [Arabido	0.204	0.192	0.308	8.9e-05
TAIR|locus:2098088	461	DAF1 "AT3G62230" [Arabidopsis	0.279	0.260	0.291	0.00016
TAIR|locus:2010032	416	AT1G13570 "AT1G13570" [Arabido	0.490	0.507	0.225	0.00035
TAIR|locus:2092737	456	AT3G18150 "AT3G18150" [Arabido	0.4	0.377	0.257	0.00068

TAIR|locus:2099644 AT3G03360 [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 7.5e-05, P = 7.5e-05
 Identities = 47/204 (23%), Positives = 95/204 (46%)

Query:     5 LSYAFASNVKELKLDVGCCRIYNLPQIVFY---LKSIYVLDF----EFCKLEPPRSTVTL 57
             +++A + NV+ L L +   + Y++P+ ++    LK +Y LDF    +F  L P + +V+ 
Sbjct:   130 INFAMSRNVENLSLYLDEDK-YDIPEFLYINSSLKQLY-LDFGCKKDFISLNP-KCSVSW 186

Query:    58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGXXXXXXXXXXXXXEIKLDSNRC 117
              SL+ L L   ++ DE I  +++GCP++E + +  C                +++ + RC
Sbjct:   187 TSLKNLSLYHCNISDESIAIILSGCPILESLLLFFCKKLKVLDLSKSPRLITLEI-TRRC 245

Query:   118 GLERVYINGVNVHSVDIKVYLEPCE-VNVSSCKNLTHLRLDGLSITDKWLYNQISELPFL 176
              +E   +   ++  + +    +PC  V+VSS      L +   +I D  L     +   +
Sbjct:   246 RMEPTQLVAPHIRCLRLINSEKPCALVDVSSLSQ-AELDITAYAIVDNKLEADFHQTMVV 304

Query:   177 EYLALHYCMKLRSINISSPRLKEL 200
             + L    C  +  + + +  LK L
Sbjct:   305 KML--EKCQNVEKLTLGANFLKML 326

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2151316 AT5G02700 "AT5G02700" [Arabidopsis thaliana (taxid:3702)]

 Score = 125 (49.1 bits), Expect = 8.9e-05, P = 8.9e-05
 Identities = 29/94 (30%), Positives = 51/94 (54%)

Query:     5 LSYAFASNVKELKL---DVGCCRIYNLPQIVFYLKSIYVLD--FEFCKLEPPRSTVTLFS 59
             + +A + NV+ L +   D    + Y  P I +   S+ +LD   +F  + P   TV+  S
Sbjct:   111 IEFALSRNVQNLSVFVRDFTYSKTYRFPDIFYLSSSLKLLDVTLDFFDMIPT-CTVSWKS 169

Query:    60 LRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC 93
             LR L L F  + DE I ++++GCP++E + ++ C
Sbjct:   170 LRNLTLRFCQIPDESIHNILSGCPILESLTLDTC 203

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2098088 DAF1 "AT3G62230" [Arabidopsis thaliana (taxid:3702)]

 Score = 92 (37.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
 Identities = 40/137 (29%), Positives = 62/137 (45%)

Query:   170 ISELPFLEYLALHYCMK--LRSINISSPRLKELVFERCE-ELVEFELDTPNLSIFKCFNY 226
             I++ P LE L +  C +  L +I   + RL +LVF+ C     +  LD PN+ IFK F  
Sbjct:   195 IAKTPLLEILNIKNCWEIGLDAITGYNDRLMKLVFKYCSFSAQQTTLDVPNIQIFKYFGK 254

Query:   227 VESF---SSNALALSQTLLCF-------ISHPVDNEWYLKFIKLLARFNLCSNVLNL--Q 274
             V  F   S+N L + +  L +       +S       +L  +     F +C  VL L  +
Sbjct:   255 VYRFEFASANKL-MEEAYLDYREESRYNVSAGAIISGFLYSMLSAKTFTICPYVLQLIQE 313

Query:   275 CNHEAVL-IPRELREIL 290
             C     L  P E R+++
Sbjct:   314 CEDPVRLKAPMETRQLV 330

GO:0003674 "molecular_function" evidence=ND

GO:0048235 "pollen sperm cell differentiation" evidence=IEP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2010032 AT1G13570 "AT1G13570" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 0.00035, P = 0.00035
 Identities = 52/231 (22%), Positives = 106/231 (45%)

Query:     1 MNRCLSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSL 60
             +++ L +   + +KEL L +G    + +P  +F    +  L+   C+ +PP+       L
Sbjct:    99 IDQWLLFLSRNGIKELVLKLGEGE-FRVPACLFNCLKLTCLELCHCEFDPPQYFKGFSYL 157

Query:    61 RKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGXXXXXXXXXXXXXEIKLDSNRCGLE 120
             + L L  + V  EVI  +++GCPL+E+++++                  + LD      +
Sbjct:   158 KSLNLHQILVAPEVIESLISGCPLLEFLSLSYFDSLVLSISAPNLMY--LYLDGE---FK 212

Query:   121 RVYI-NGVNVHSVDIKVYL--EPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLE 177
              +++ N   + ++ + +Y+  +  +   SS  NL    L G+ + +K     +  + F +
Sbjct:   213 DIFLENTPKLVAISVSMYMHEDVTDFEQSSDYNLVKF-LGGVPLLEKL----VGYIYFTK 267

Query:   178 YLALHYC---MKLRSINISSPRLKELVFERCEE-LVEFELDT--PNLSIFK 222
             YL++      + L  I++ +  L ++ FE  +E LV   L T  PNL   K
Sbjct:   268 YLSIGDDPGRLPLTYIHLKTIELYQVCFEDADEVLVLLRLVTHSPNLKELK 318

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2092737 AT3G18150 "AT3G18150" [Arabidopsis thaliana (taxid:3702)]

 Score = 117 (46.2 bits), Expect = 0.00068, P = 0.00068
 Identities = 50/194 (25%), Positives = 86/194 (44%)

Query:     5 LSYAFASNVKELKLDVG--CCRIYNLPQIVFYLKS-----IYVLDFEFCKLEPPRSTVTL 57
             + +A + NV  L LD+       +  P   F++ S       VLDF          T+  
Sbjct:   117 IKFAMSRNVDHLSLDLWNQVANKFKFPDF-FHINSSLKQLTVVLDFS--------DTMIA 167

Query:    58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGXXXXXXXXXXXXXEIKLDSNRC 117
               L+KL LS   + DE + +++ GCP++E + +++C G              ++++ N  
Sbjct:   168 ICLKKLYLSTCLLSDESMANILFGCPILESLTLDHCGGLRVLDLSKSLRLRTLEINCNIW 227

Query:   118 --GLERVYINGVNVHSVDIKVYLEPCE-VNVSSCKNLT-HLRLDGLSITDKWLYNQISEL 173
                L  + I   + H + ++    PC  V+VSS K    ++ +D  S T K  + Q++ L
Sbjct:   228 VPELTAMQIVAPHTHCLRLRNSKLPCSLVDVSSLKEAKLNICIDSFSKTIKADFLQVTLL 287

Query:   174 PFLEYLALHYCMKL 187
               LE   LH   KL
Sbjct:   288 KMLE--KLHNVEKL 299


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.140   0.439    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      430       417   0.00082  118 3  11 22  0.48    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  622 (66 KB)
  Total size of DFA:  298 KB (2152 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.81u 0.09s 35.90t   Elapsed:  00:00:02
  Total cpu time:  35.81u 0.09s 35.90t   Elapsed:  00:00:02
  Start:  Fri May 10 00:27:29 2013   End:  Fri May 10 00:27:31 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	430
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.53
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.48
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.35
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.26
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.25
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	99.04
KOG4341	483	consensus F-box protein containing LRR [General fu	98.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.79
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.71
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.69
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.68
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.64
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.6
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.52
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.51
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.5
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.46
KOG4341	483	consensus F-box protein containing LRR [General fu	98.43
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.39
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.36
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.26
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.24
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.24
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.1
KOG0617	264	consensus Ras suppressor protein (contains leucine	98.04
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.97
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.96
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.93
KOG0472	565	consensus Leucine-rich repeat protein [Function un	97.81
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.65
PF08387	51	FBD: FBD; InterPro: IPR013596 This region is found	97.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.6
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.52
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	97.5
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.44
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	97.38
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.26
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.26
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	97.06
KOG2982	418	consensus Uncharacterized conserved protein [Funct	97.05
KOG1947	482	consensus Leucine rich repeat proteins, some prote	97.01
PRK15386	426	type III secretion protein GogB; Provisional	96.9
PLN03150	623	hypothetical protein; Provisional	96.89
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.81
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.75
PLN03150	623	hypothetical protein; Provisional	96.69
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.65
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	96.63
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.6
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.27
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	96.17
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.13
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.87
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.86
smart00579	72	FBD domain in FBox and BRCT domain containing plan	95.7
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	95.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	94.73
PRK15386	426	type III secretion protein GogB; Provisional	94.73
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.53
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	94.38
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	94.1
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	94.03
KOG2123	388	consensus Uncharacterized conserved protein [Funct	93.96
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	93.41
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	93.33
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	92.89
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	92.56
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.49
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	90.05
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.33
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	86.65
PF07723	26	LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Le	85.65
KOG3864	221	consensus Uncharacterized conserved protein [Funct	83.73
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	83.16
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	82.72
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	80.45

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.53  E-value=2.7e-14  Score=158.91  Aligned_cols=63  Identities=24%  Similarity=0.294  Sum_probs=31.4

Q ss_pred             CCccccCCCCccEEEEcCccCCC--CC-CCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120           28 LPQIVFYLKSIYVLDFEFCKLEP--PR-STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (430)
Q Consensus        28 LP~~l~~~~~L~~L~Ls~~~~~~--~~-~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c   93 (430)
                      +|..+..+++|++|+|+++.+..  |. .+.++++|++|+|++|.+++.. +  ...+++|++|++++|
T Consensus        85 ~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~-p--~~~l~~L~~L~Ls~n  150 (968)
T PLN00113         85 ISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSI-P--RGSIPNLETLDLSNN  150 (968)
T ss_pred             CChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCcccccc-C--ccccCCCCEEECcCC
Confidence            34455556666666666655432  22 2335566666666665543211 1  123445555555554

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.48  E-value=7.5e-14  Score=155.41  Aligned_cols=59  Identities=17%  Similarity=0.218  Sum_probs=27.7

Q ss_pred             CCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120           35 LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      +++|++|+|++|.+..  |..+.++++|++|+|++|.++.. ++..+.++++|++|++++|.
T Consensus       139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~n~  199 (968)
T PLN00113        139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK-IPNSLTNLTSLEFLTLASNQ  199 (968)
T ss_pred             cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc-CChhhhhCcCCCeeeccCCC
Confidence            4455555555544321  33445555555555555544321 12334445555555555543

>PLN03210 Resistant to P

Probab=99.35  E-value=3.6e-12  Score=143.40  Aligned_cols=90  Identities=20%  Similarity=0.242  Sum_probs=41.0

Q ss_pred             ccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc--
Q 014120           24 RIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--  100 (430)
Q Consensus        24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~--  100 (430)
                      ....+|..+ ..++|+.|+++++.+.. +..+..+++|+.|+|+++.... .++ -++.+++|+.|+|++|..+..+.  
T Consensus       600 ~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~-~ip-~ls~l~~Le~L~L~~c~~L~~lp~s  676 (1153)
T PLN03210        600 PLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLK-EIP-DLSMATNLETLKLSDCSSLVELPSS  676 (1153)
T ss_pred             CCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcC-cCC-ccccCCcccEEEecCCCCccccchh
Confidence            345555443 45566666666554332 3334455555555555543210 011 13345555555555554433322  


Q ss_pred             cCCCCCcCEEEcCCCc
Q 014120          101 LLGLNKLKEIKLDSNR  116 (430)
Q Consensus       101 l~~~~~L~~L~l~~c~  116 (430)
                      +..+++|+.|++++|.
T Consensus       677 i~~L~~L~~L~L~~c~  692 (1153)
T PLN03210        677 IQYLNKLEDLDMSRCE  692 (1153)
T ss_pred             hhccCCCCEEeCCCCC
Confidence            2233444444444443

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.26  E-value=6.5e-13  Score=131.38  Aligned_cols=160  Identities=16%  Similarity=0.207  Sum_probs=98.9

Q ss_pred             EEecCCccccCC-ccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120           18 LDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (430)
Q Consensus        18 L~~~~~~~~~LP-~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~   95 (430)
                      |+++++....+- ..+.++++|+.+++..+.+.. |....-..+|+.|+|.+|.|+.-. ...++.+|.||.|||+.+..
T Consensus        83 LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~-se~L~~l~alrslDLSrN~i  161 (873)
T KOG4194|consen   83 LDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVT-SEELSALPALRSLDLSRNLI  161 (873)
T ss_pred             eeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeecccccccc-HHHHHhHhhhhhhhhhhchh
Confidence            555555555553 346678999999999887765 433344556999999999874322 23355678899999887532


Q ss_pred             --CCccccCCCCCcCEEEcCCCcCCceEeEe----eccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHH
Q 014120           96 --LKSLQLLGLNKLKEIKLDSNRCGLERVYI----NGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLY  167 (430)
Q Consensus        96 --l~~l~l~~~~~L~~L~l~~c~~~l~~l~i----~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~  167 (430)
                        ++.-.+..-.++++|+++++.  +..+..    ...+|.+|.++.+.+.  ..-.|.+++.|+.|+|..|.|  ..++
T Consensus       162 s~i~~~sfp~~~ni~~L~La~N~--It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~i--rive  237 (873)
T KOG4194|consen  162 SEIPKPSFPAKVNIKKLNLASNR--ITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRI--RIVE  237 (873)
T ss_pred             hcccCCCCCCCCCceEEeecccc--ccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccce--eeeh
Confidence              222223323578888887764  333321    2346777777762222  134566778888888877776  3332


Q ss_pred             H-HhcCCCccceeccc
Q 014120          168 N-QISELPFLEYLALH  182 (430)
Q Consensus       168 ~-l~~~~p~Le~L~L~  182 (430)
                      - -+.++|+|+.|.+.
T Consensus       238 ~ltFqgL~Sl~nlklq  253 (873)
T KOG4194|consen  238 GLTFQGLPSLQNLKLQ  253 (873)
T ss_pred             hhhhcCchhhhhhhhh
Confidence            2 35667777777765

>PLN03210 Resistant to P

Probab=99.25  E-value=3.9e-11  Score=135.14  Aligned_cols=205  Identities=19%  Similarity=0.138  Sum_probs=119.6

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCcc-CCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL   96 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~-~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l   96 (430)
                      |++..+....+|..+..+++|+.|+|+++. +...+.+..+++|++|+|++|.... .++..+.++++|+.|++++|..+
T Consensus       616 L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~ls~l~~Le~L~L~~c~~L~-~lp~si~~L~~L~~L~L~~c~~L  694 (1153)
T PLN03210        616 LQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPDLSMATNLETLKLSDCSSLV-ELPSSIQYLNKLEDLDMSRCENL  694 (1153)
T ss_pred             EECcCccccccccccccCCCCCEEECCCCCCcCcCCccccCCcccEEEecCCCCcc-ccchhhhccCCCCEEeCCCCCCc
Confidence            344445677788888888999999998864 3332357778999999999885422 24556778889999999999887


Q ss_pred             CccccC-CCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCC---h--HHH-HH
Q 014120           97 KSLQLL-GLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSIT---D--KWL-YN  168 (430)
Q Consensus        97 ~~l~l~-~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~---~--~~l-~~  168 (430)
                      +.+... ++++|+.|++++|. .+..+.-..++|+.|++++..+. .+.. ..+++|+.|.+.++...   +  ..+ +.
T Consensus       695 ~~Lp~~i~l~sL~~L~Lsgc~-~L~~~p~~~~nL~~L~L~~n~i~~lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~  772 (1153)
T PLN03210        695 EILPTGINLKSLYRLNLSGCS-RLKSFPDISTNISWLDLDETAIEEFPSN-LRLENLDELILCEMKSEKLWERVQPLTPL  772 (1153)
T ss_pred             CccCCcCCCCCCCEEeCCCCC-CccccccccCCcCeeecCCCcccccccc-ccccccccccccccchhhccccccccchh
Confidence            776543 46889999999887 56555434567888887762211 1111 13444555544432210   0  000 01


Q ss_pred             HhcCCCccceecccccccccccccc---ccccceEeccccccccccc--ccCCCcceEEecc
Q 014120          169 QISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEFE--LDTPNLSIFKCFN  225 (430)
Q Consensus       169 l~~~~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~  225 (430)
                      ....+++|+.|++++|+.+..+|..   .++|+.|++++|..++.+.  +..++|+++.+.|
T Consensus       773 ~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~  834 (1153)
T PLN03210        773 MTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSG  834 (1153)
T ss_pred             hhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCC
Confidence            1122345555555555544444432   3445555555555444432  2334455555444

syringae 6; Provisional

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=99.04  E-value=5.1e-11  Score=118.20  Aligned_cols=211  Identities=21%  Similarity=0.210  Sum_probs=105.4

Q ss_pred             CceEEEEEecCCccccCCcc-ccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120           12 NVKELKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~~LP~~-l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L   88 (430)
                      ++....|++.++.+..+-.. |-++.+|..|+|+.+.+..  +..|.++|+|+.|+|..|.+.... .--+.+++.|+.|
T Consensus       172 ~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive-~ltFqgL~Sl~nl  250 (873)
T KOG4194|consen  172 KVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVE-GLTFQGLPSLQNL  250 (873)
T ss_pred             CCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeeh-hhhhcCchhhhhh
Confidence            34444455555667777544 4446788888888876554  356777888888888888763211 1124566667766


Q ss_pred             EeeeCC--CCCccccCCCCCcCEEEcCCCc----------------------CCceEeEee----ccceeEEEeecCCCC
Q 014120           89 NINNCP--GLKSLQLLGLNKLKEIKLDSNR----------------------CGLERVYIN----GVNVHSVDIKVYLEP  140 (430)
Q Consensus        89 ~L~~c~--~l~~l~l~~~~~L~~L~l~~c~----------------------~~l~~l~i~----~p~L~~L~l~~~~~~  140 (430)
                      .|..+.  .|++-.+.++.++++|++..+.                      ..++.+.++    ++.|+.|+++.+.+.
T Consensus       251 klqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~  330 (873)
T KOG4194|consen  251 KLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT  330 (873)
T ss_pred             hhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc
Confidence            665543  2333333344444444444332                      023333332    455555555542211


Q ss_pred             --ceeccCCCCcCceEEccCCCCChHHHHH-HhcCCCccceecccccccccccc------ccccccceEecccccccccc
Q 014120          141 --CEVNVSSCKNLTHLRLDGLSITDKWLYN-QISELPFLEYLALHYCMKLRSIN------ISSPRLKELVFERCEELVEF  211 (430)
Q Consensus       141 --~~~~~~~l~~L~~L~L~~~~i~~~~l~~-l~~~~p~Le~L~L~~c~~l~~l~------~~~~~L~~L~l~~c~~L~~~  211 (430)
                        .+..|..++.|+.|+|+.|.+  +.+.+ .+.++.+|+.|++.+..--..+.      -..++|+.|.+.+. +++.+
T Consensus       331 ~l~~~sf~~L~~Le~LnLs~Nsi--~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I  407 (873)
T KOG4194|consen  331 RLDEGSFRVLSQLEELNLSHNSI--DHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSI  407 (873)
T ss_pred             cCChhHHHHHHHhhhhcccccch--HHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCc-eeeec
Confidence              123344445555555555555  33332 34445556666654332111110      01455555555554 44443


Q ss_pred             c----ccCCCcceEEecce
Q 014120          212 E----LDTPNLSIFKCFNY  226 (430)
Q Consensus       212 ~----i~~p~L~~~~~~~~  226 (430)
                      .    ...+.|+.+.+.++
T Consensus       408 ~krAfsgl~~LE~LdL~~N  426 (873)
T KOG4194|consen  408 PKRAFSGLEALEHLDLGDN  426 (873)
T ss_pred             chhhhccCcccceecCCCC
Confidence            3    23355555555444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.85  E-value=2.2e-10  Score=109.75  Aligned_cols=275  Identities=13%  Similarity=0.127  Sum_probs=153.4

Q ss_pred             CccEEEEcCccCCC--C--CCCCCCCCCCEEEEeeec-CChHHHHHHhcCCCCccEEEeeeCCCCCcccc----CCCCCc
Q 014120           37 SIYVLDFEFCKLEP--P--RSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSLQL----LGLNKL  107 (430)
Q Consensus        37 ~L~~L~Ls~~~~~~--~--~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l----~~~~~L  107 (430)
                      -|+.|.+.||.-..  +  ....++|+++.|.+.+|. +|+..+..+...|+.|++|++..|..++...+    .+|++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            47888888875433  1  344678999999998885 48888888888999999999999988776544    378999


Q ss_pred             CEEEcCCCcCCce-----EeEeeccceeEEEeec-CCCCc---eeccCCCCcCceEEccCC-CCChHHHHHHhcCCCccc
Q 014120          108 KEIKLDSNRCGLE-----RVYINGVNVHSVDIKV-YLEPC---EVNVSSCKNLTHLRLDGL-SITDKWLYNQISELPFLE  177 (430)
Q Consensus       108 ~~L~l~~c~~~l~-----~l~i~~p~L~~L~l~~-~~~~~---~~~~~~l~~L~~L~L~~~-~i~~~~l~~l~~~~p~Le  177 (430)
                      +++++++|. .+.     .+.-++..++.+...| ...+.   ...-..+.-+..+++..+ .++|..+..+-.+|..|+
T Consensus       219 ~~lNlSwc~-qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq  297 (483)
T KOG4341|consen  219 KYLNLSWCP-QISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQ  297 (483)
T ss_pred             HHhhhccCc-hhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhh
Confidence            999999987 332     2222333444443333 11110   000123334444554443 455655555556666777


Q ss_pred             eeccccccccccccc-----cccccceEecccccccccccccCCCcceEEecceeeEEeccccccceeEEEeeecCCchH
Q 014120          178 YLALHYCMKLRSINI-----SSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNE  252 (430)
Q Consensus       178 ~L~L~~c~~l~~l~~-----~~~~L~~L~l~~c~~L~~~~i~~p~L~~~~~~~~~~~~~~~~~sL~~v~l~~~~~~~~~~  252 (430)
                      .|+.++|..+....+     ..++|+.+.+..|.++++..+..              ..-+...|.+.++.-  . +. .
T Consensus       298 ~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~--------------l~rn~~~Le~l~~e~--~-~~-~  359 (483)
T KOG4341|consen  298 VLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM--------------LGRNCPHLERLDLEE--C-GL-I  359 (483)
T ss_pred             hhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh--------------hhcCChhhhhhcccc--c-ce-e
Confidence            777766665533222     25666666666665554433211              001112222222200  0 00 0


Q ss_pred             HHHHHHHHHhhCCCCceEeeeEeeccceecCccccccc--CCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCcee
Q 014120          253 WYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREIL--CPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETL  330 (430)
Q Consensus       253 ~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~--~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L  330 (430)
                      .-..+..+-.+...++.|++..|+....   +..+...  ..-.-.+..+++...|     ...+..-.-|..||+||.+
T Consensus       360 ~d~tL~sls~~C~~lr~lslshce~itD---~gi~~l~~~~c~~~~l~~lEL~n~p-----~i~d~~Le~l~~c~~Leri  431 (483)
T KOG4341|consen  360 TDGTLASLSRNCPRLRVLSLSHCELITD---EGIRHLSSSSCSLEGLEVLELDNCP-----LITDATLEHLSICRNLERI  431 (483)
T ss_pred             hhhhHhhhccCCchhccCChhhhhhhhh---hhhhhhhhccccccccceeeecCCC-----CchHHHHHHHhhCccccee
Confidence            0013344445667788888876654321   1111111  1123556667777765     3445555667999999996


Q ss_pred             eEecCchhh
Q 014120          331 SIEWPNINF  339 (430)
Q Consensus       331 ~i~~~~~~~  339 (430)
                      ++ ++++..
T Consensus       432 ~l-~~~q~v  439 (483)
T KOG4341|consen  432 EL-IDCQDV  439 (483)
T ss_pred             ee-echhhh
Confidence            66 244433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.79  E-value=1.1e-08  Score=108.84  Aligned_cols=193  Identities=17%  Similarity=0.066  Sum_probs=117.4

Q ss_pred             HhCCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120            9 FASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus         9 ~~~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      ...+-..|  +++.+....+|+.+.  .+|+.|.++++.+.. |.   ..++|++|+|++|.++.  ++.   ..++|+.
T Consensus       199 l~~~~~~L--dLs~~~LtsLP~~l~--~~L~~L~L~~N~Lt~LP~---lp~~Lk~LdLs~N~Lts--LP~---lp~sL~~  266 (788)
T PRK15387        199 LNNGNAVL--NVGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLE  266 (788)
T ss_pred             hcCCCcEE--EcCCCCCCcCCcchh--cCCCEEEccCCcCCCCCC---CCCCCcEEEecCCccCc--ccC---cccccce
Confidence            33444444  455556778998775  489999999987664 32   36899999999998853  222   2468999


Q ss_pred             EEeeeCCCCCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHH
Q 014120           88 ININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY  167 (430)
Q Consensus        88 L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~  167 (430)
                      |++++|. ++.+.- ...+|+.|++++|.  +..+....++|+.|+++++.+.....  -..+|+.|.+.+|.++  .++
T Consensus       267 L~Ls~N~-L~~Lp~-lp~~L~~L~Ls~N~--Lt~LP~~p~~L~~LdLS~N~L~~Lp~--lp~~L~~L~Ls~N~L~--~LP  338 (788)
T PRK15387        267 LSIFSNP-LTHLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLASLPA--LPSELCKLWAYNNQLT--SLP  338 (788)
T ss_pred             eeccCCc-hhhhhh-chhhcCEEECcCCc--cccccccccccceeECCCCccccCCC--CcccccccccccCccc--ccc
Confidence            9998874 333322 13578888888764  44443345778888887732220001  1235777788887773  333


Q ss_pred             HHhcCCCccceeccccccccccccccccccceEecccccccccccccCCCcceEEecce
Q 014120          168 NQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNY  226 (430)
Q Consensus       168 ~l~~~~p~Le~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~~~i~~p~L~~~~~~~~  226 (430)
                      .+   .+.|+.|++++ +.+..+|...++|+.|+++++ .++.+.-...+|..+.+.++
T Consensus       339 ~l---p~~Lq~LdLS~-N~Ls~LP~lp~~L~~L~Ls~N-~L~~LP~l~~~L~~LdLs~N  392 (788)
T PRK15387        339 TL---PSGLQELSVSD-NQLASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGN  392 (788)
T ss_pred             cc---ccccceEecCC-CccCCCCCCCcccceehhhcc-ccccCcccccccceEEecCC
Confidence            22   13678888865 345556655667777777765 45544322234555544443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.76  E-value=2.6e-10  Score=104.92  Aligned_cols=198  Identities=17%  Similarity=0.231  Sum_probs=124.0

Q ss_pred             HHHHhCCceEEEEEecCCccccCCcccc-CCCCccEEEEcCccCCC---CCCCCCCCCCCEEEEeeecCChHHHHHHhcC
Q 014120            6 SYAFASNVKELKLDVGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAG   81 (430)
Q Consensus         6 ~~a~~~~v~~L~L~~~~~~~~~LP~~l~-~~~~L~~L~Ls~~~~~~---~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~   81 (430)
                      ...+++||..+.+--..-.--.+.+.+. .-..|++|+|+.-.+..   ..-+..|.+|+.|.|.++.++|.. ..-+..
T Consensus       154 ~~l~~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I-~~~iAk  232 (419)
T KOG2120|consen  154 GRLLSRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPI-VNTIAK  232 (419)
T ss_pred             HHHHhCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHH-HHHHhc
Confidence            4456788877766322111111111111 12459999999854433   134567899999999999997764 444556


Q ss_pred             CCCccEEEeeeCCCCCccc----cCCCCCcCEEEcCCCcCCceEe-E----eeccceeEEEeec--CCCC-c--eeccCC
Q 014120           82 CPLIEYININNCPGLKSLQ----LLGLNKLKEIKLDSNRCGLERV-Y----INGVNVHSVDIKV--YLEP-C--EVNVSS  147 (430)
Q Consensus        82 ~p~Le~L~L~~c~~l~~l~----l~~~~~L~~L~l~~c~~~l~~l-~----i~~p~L~~L~l~~--~~~~-~--~~~~~~  147 (430)
                      -.+|+.|+|+.|+++++..    +++|..|..|++++|. -..+. .    --.++|..|+++|  .... .  ..-...
T Consensus       233 N~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~-l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~r  311 (419)
T KOG2120|consen  233 NSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCF-LFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRR  311 (419)
T ss_pred             cccceeeccccccccchhHHHHHHHhhhhHhhcCchHhh-ccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHh
Confidence            6789999999999987643    4578999999999997 33222 1    1246777777777  1111 0  111256


Q ss_pred             CCcCceEEccCCC-CChHHHHHHhcCCCccceecccccccccc---ccc-cccccceEeccccc
Q 014120          148 CKNLTHLRLDGLS-ITDKWLYNQISELPFLEYLALHYCMKLRS---INI-SSPRLKELVFERCE  206 (430)
Q Consensus       148 l~~L~~L~L~~~~-i~~~~l~~l~~~~p~Le~L~L~~c~~l~~---l~~-~~~~L~~L~l~~c~  206 (430)
                      |++|..|+|+.+. ++++.+. .+-.++.|++|+++.|..+..   +.. +.|+|.+|++.+|-
T Consensus       312 cp~l~~LDLSD~v~l~~~~~~-~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  312 CPNLVHLDLSDSVMLKNDCFQ-EFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             CCceeeeccccccccCchHHH-HHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEecccc
Confidence            7888888887664 4443333 344678888888888876521   111 35677777777763

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.71  E-value=2e-08  Score=97.26  Aligned_cols=60  Identities=18%  Similarity=0.189  Sum_probs=29.4

Q ss_pred             CCCccEEEEcCccCCC------CCCCCCCCCCCEEEEeeecCC--hHH---HHHHhcCCCCccEEEeeeCC
Q 014120           35 LKSIYVLDFEFCKLEP------PRSTVTLFSLRKLCLSFVHVD--DEV---IRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~------~~~~~~l~~L~~L~Ls~~~~~--~~~---l~~l~~~~p~Le~L~L~~c~   94 (430)
                      ..+|+.|+++++.+..      +......++|++|+++++.+.  ...   +...+..+++|+.|++++|.
T Consensus        22 l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~   92 (319)
T cd00116          22 LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNA   92 (319)
T ss_pred             HhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence            3446666666655422      122334555666666655543  111   22233445566666666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.69  E-value=6.8e-10  Score=111.13  Aligned_cols=75  Identities=21%  Similarity=0.379  Sum_probs=37.7

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC-C-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      ||++.+.....|..+-..+++-+|+||++.+.. | ..+.+++.|-.|+||+|.+.  .++.-+..+.+|+.|.|++++
T Consensus       108 lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe--~LPPQ~RRL~~LqtL~Ls~NP  184 (1255)
T KOG0444|consen  108 LDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE--MLPPQIRRLSMLQTLKLSNNP  184 (1255)
T ss_pred             eecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh--hcCHHHHHHhhhhhhhcCCCh
Confidence            444445555555555555666666666654433 2 33455555555555555441  122233334455555555543

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.68  E-value=3.4e-09  Score=110.59  Aligned_cols=85  Identities=16%  Similarity=0.027  Sum_probs=48.2

Q ss_pred             CceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccccccccc---c
Q 014120          118 GLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS---S  194 (430)
Q Consensus       118 ~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~~---~  194 (430)
                      .+..+.+..|+++.+...............-.+|++++++.+.+  ..+++.+..|++|+.+...... +..++..   .
T Consensus       210 ~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l--~~lp~wi~~~~nle~l~~n~N~-l~~lp~ri~~~  286 (1081)
T KOG0618|consen  210 QLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNL--SNLPEWIGACANLEALNANHNR-LVALPLRISRI  286 (1081)
T ss_pred             ccceEEecCcchheeeeccCcceeeccccccccceeeecchhhh--hcchHHHHhcccceEecccchh-HHhhHHHHhhh
Confidence            34455555566666555441111011112235788999999988  5677888899999999886432 2333322   2


Q ss_pred             cccceEecccc
Q 014120          195 PRLKELVFERC  205 (430)
Q Consensus       195 ~~L~~L~l~~c  205 (430)
                      .+|+.|.+..|
T Consensus       287 ~~L~~l~~~~n  297 (1081)
T KOG0618|consen  287 TSLVSLSAAYN  297 (1081)
T ss_pred             hhHHHHHhhhh
Confidence            34444544444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.64  E-value=4.6e-10  Score=112.27  Aligned_cols=55  Identities=27%  Similarity=0.367  Sum_probs=42.3

Q ss_pred             EEEEecCCccccCCccccC-CCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecC
Q 014120           16 LKLDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV   70 (430)
Q Consensus        16 L~L~~~~~~~~~LP~~l~~-~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~   70 (430)
                      ++|+++.+.+-++|.++|- +..|-.|+||++.+.. |+....+..|++|+|++|.+
T Consensus       129 iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL  185 (1255)
T KOG0444|consen  129 IVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPL  185 (1255)
T ss_pred             EEEEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChh
Confidence            6777877788888877654 7778888888887765 56777788888888888765

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.60  E-value=4.6e-09  Score=96.79  Aligned_cols=172  Identities=16%  Similarity=0.264  Sum_probs=97.3

Q ss_pred             CCCccEEEEcCccCCCC---CCCCCC-CCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCCCcC
Q 014120           35 LKSIYVLDFEFCKLEPP---RSTVTL-FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLK  108 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~~---~~~~~l-~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~~L~  108 (430)
                      -+.+.++.+.......|   ..+.-+ +.|+.|||++..++...+..+++.|..|+.|+|.+..-=..+  .++.-.+|.
T Consensus       158 ~rgV~v~Rlar~~~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~  237 (419)
T KOG2120|consen  158 SRGVIVFRLARSFMDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLV  237 (419)
T ss_pred             hCCeEEEEcchhhhcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccce
Confidence            35567777776555554   222223 369999999999999999999999999999999986431111  233447899


Q ss_pred             EEEcCCCcCCceEeEe-----eccceeEEEeec-CCC-C-ceeccCCC-CcCceEEccCCC--CChHHHHHHhcCCCccc
Q 014120          109 EIKLDSNRCGLERVYI-----NGVNVHSVDIKV-YLE-P-CEVNVSSC-KNLTHLRLDGLS--ITDKWLYNQISELPFLE  177 (430)
Q Consensus       109 ~L~l~~c~~~l~~l~i-----~~p~L~~L~l~~-~~~-~-~~~~~~~l-~~L~~L~L~~~~--i~~~~l~~l~~~~p~Le  177 (430)
                      .|+++.|. ++.+...     +|..|..|+++- ... + ....+... ++|+.|+|+|+.  +.+..+..+...||.|.
T Consensus       238 ~lnlsm~s-G~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~  316 (419)
T KOG2120|consen  238 RLNLSMCS-GFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLV  316 (419)
T ss_pred             eecccccc-ccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCcee
Confidence            99999987 6654322     244444444432 110 0 00111111 345555555442  22234444555566666


Q ss_pred             eecccccccccccc----ccccccceEecccccc
Q 014120          178 YLALHYCMKLRSIN----ISSPRLKELVFERCEE  207 (430)
Q Consensus       178 ~L~L~~c~~l~~l~----~~~~~L~~L~l~~c~~  207 (430)
                      .||+++|..++.--    .-.+.|++|.++.|..
T Consensus       317 ~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~  350 (419)
T KOG2120|consen  317 HLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD  350 (419)
T ss_pred             eeccccccccCchHHHHHHhcchheeeehhhhcC
Confidence            66665555443210    0134555555555543

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.52  E-value=2.6e-08  Score=96.50  Aligned_cols=214  Identities=17%  Similarity=0.119  Sum_probs=134.7

Q ss_pred             CCceEEEEEecCC---ccccCCccccCCCCccEEEEcCccCC--C------CCCCCCCCCCCEEEEeeecCCh---HHHH
Q 014120           11 SNVKELKLDVGCC---RIYNLPQIVFYLKSIYVLDFEFCKLE--P------PRSTVTLFSLRKLCLSFVHVDD---EVIR   76 (430)
Q Consensus        11 ~~v~~L~L~~~~~---~~~~LP~~l~~~~~L~~L~Ls~~~~~--~------~~~~~~l~~L~~L~Ls~~~~~~---~~l~   76 (430)
                      .+++++.+.-..-   ....++..+...+++++|+++++...  .      +..+..+++|+.|++++|.+..   ..+.
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~  102 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLE  102 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHH
Confidence            3466666655431   23456767777888999999887654  1      1245568899999999998853   2333


Q ss_pred             HHhcCCCCccEEEeeeCCCC----Ccc--ccCCC-CCcCEEEcCCCc-C--CceEe---EeeccceeEEEeecCCCC---
Q 014120           77 DMVAGCPLIEYININNCPGL----KSL--QLLGL-NKLKEIKLDSNR-C--GLERV---YINGVNVHSVDIKVYLEP---  140 (430)
Q Consensus        77 ~l~~~~p~Le~L~L~~c~~l----~~l--~l~~~-~~L~~L~l~~c~-~--~l~~l---~i~~p~L~~L~l~~~~~~---  140 (430)
                      .+... ++|++|++++|..-    ..+  .+..+ ++|+.|++++|. .  ....+   ...+++|++|++++....   
T Consensus       103 ~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~  181 (319)
T cd00116         103 SLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG  181 (319)
T ss_pred             HHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHH
Confidence            44444 67999999988532    111  23345 789999999886 1  01111   112467888888773221   


Q ss_pred             ---ceeccCCCCcCceEEccCCCCChHH---HHHHhcCCCccceeccccccccc----cccc----cccccceEeccccc
Q 014120          141 ---CEVNVSSCKNLTHLRLDGLSITDKW---LYNQISELPFLEYLALHYCMKLR----SINI----SSPRLKELVFERCE  206 (430)
Q Consensus       141 ---~~~~~~~l~~L~~L~L~~~~i~~~~---l~~l~~~~p~Le~L~L~~c~~l~----~l~~----~~~~L~~L~l~~c~  206 (430)
                         ....+..+++|+.|++++|.+++..   +...+..++.|+.|++++|.--.    .+..    ..++|++|++++| 
T Consensus       182 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n-  260 (319)
T cd00116         182 IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCN-  260 (319)
T ss_pred             HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCC-
Confidence               0112345679999999999987643   44567788999999999875321    1111    1368999999998 


Q ss_pred             ccccc--------cccCCCcceEEecce
Q 014120          207 ELVEF--------ELDTPNLSIFKCFNY  226 (430)
Q Consensus       207 ~L~~~--------~i~~p~L~~~~~~~~  226 (430)
                      .+++.        .-..++++++.+.++
T Consensus       261 ~i~~~~~~~l~~~~~~~~~L~~l~l~~N  288 (319)
T cd00116         261 DITDDGAKDLAEVLAEKESLLELDLRGN  288 (319)
T ss_pred             CCCcHHHHHHHHHHhcCCCccEEECCCC
Confidence            55411        122356676666554

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=1.4e-08  Score=98.18  Aligned_cols=191  Identities=17%  Similarity=0.144  Sum_probs=129.3

Q ss_pred             CCCCccEEEEcCccCCCC---CCCCCCCCCCEEEEeeecC-ChHHHHHHhcCCCCccEEEeeeCCCC---CccccCCCCC
Q 014120           34 YLKSIYVLDFEFCKLEPP---RSTVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCPGL---KSLQLLGLNK  106 (430)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~~---~~~~~l~~L~~L~Ls~~~~-~~~~l~~l~~~~p~Le~L~L~~c~~l---~~l~l~~~~~  106 (430)
                      +.++|+...|.++....+   .....||+++.|+|++|-+ .+..+..++..+|+||.|+|+.+...   .......+++
T Consensus       119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~  198 (505)
T KOG3207|consen  119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH  198 (505)
T ss_pred             hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence            467888888988776553   2567899999999999988 67888899999999999999987531   1111123689


Q ss_pred             cCEEEcCCCcC---CceEeEeeccceeEEEeecCC-CC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecc
Q 014120          107 LKEIKLDSNRC---GLERVYINGVNVHSVDIKVYL-EP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLAL  181 (430)
Q Consensus       107 L~~L~l~~c~~---~l~~l~i~~p~L~~L~l~~~~-~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L  181 (430)
                      |+.|.+++|.-   .+..+...+|+|+.|.+.++. +. ......-+..|+.|+|++|++-+...-.....+|.|+.|++
T Consensus       199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl  278 (505)
T KOG3207|consen  199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL  278 (505)
T ss_pred             hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence            99999999961   122233458999999888732 11 12223345689999999998854333346778999999999


Q ss_pred             cccc--ccccccc-------cccccceEecccccccc---ccc--ccCCCcceEEecc
Q 014120          182 HYCM--KLRSINI-------SSPRLKELVFERCEELV---EFE--LDTPNLSIFKCFN  225 (430)
Q Consensus       182 ~~c~--~l~~l~~-------~~~~L~~L~l~~c~~L~---~~~--i~~p~L~~~~~~~  225 (430)
                      +.|.  .+...++       ..++|++|++..+ ++.   ++.  ...+++..+.+.+
T Consensus       279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~~~~  335 (505)
T KOG3207|consen  279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLRITL  335 (505)
T ss_pred             cccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhhccc
Confidence            8654  2222222       2578999988876 332   222  2335555555433

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.50  E-value=2.1e-09  Score=91.58  Aligned_cols=154  Identities=19%  Similarity=0.185  Sum_probs=94.7

Q ss_pred             cccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCC-ccccC
Q 014120           25 IYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLK-SLQLL  102 (430)
Q Consensus        25 ~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~-~l~l~  102 (430)
                      ...+| .+|.+.+++.|.||++.+.. |..+..+.+|+.|++++|++.+  ++..++.+|.|+.|+++-++... .-.+.
T Consensus        23 f~~~~-gLf~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~--lp~~issl~klr~lnvgmnrl~~lprgfg   99 (264)
T KOG0617|consen   23 FEELP-GLFNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEE--LPTSISSLPKLRILNVGMNRLNILPRGFG   99 (264)
T ss_pred             Hhhcc-cccchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhh--cChhhhhchhhhheecchhhhhcCccccC
Confidence            44555 77899999999999987654 5677889999999999997754  46678888999999887653211 11234


Q ss_pred             CCCCcCEEEcCCCc---CCceEeEeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccce
Q 014120          103 GLNKLKEIKLDSNR---CGLERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY  178 (430)
Q Consensus       103 ~~~~L~~L~l~~c~---~~l~~l~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~  178 (430)
                      .+|.|..|+++.+.   ..+..-.+.+..|+.|.++..... .+.+++++++|+.|.+..|++  -.++.-++.+..|++
T Consensus       100 s~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndl--l~lpkeig~lt~lre  177 (264)
T KOG0617|consen  100 SFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDL--LSLPKEIGDLTRLRE  177 (264)
T ss_pred             CCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCch--hhCcHHHHHHHHHHH
Confidence            45777888877654   111111122333444444431111 234555666666666666655  445555555566666


Q ss_pred             ecccc
Q 014120          179 LALHY  183 (430)
Q Consensus       179 L~L~~  183 (430)
                      |.|.+
T Consensus       178 lhiqg  182 (264)
T KOG0617|consen  178 LHIQG  182 (264)
T ss_pred             Hhccc
Confidence            66654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.46  E-value=3.7e-07  Score=97.26  Aligned_cols=91  Identities=16%  Similarity=0.162  Sum_probs=55.9

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEE
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~   89 (430)
                      .+++.|.+.  .+....+|..   +++|++|++++|.+.. |.   ..++|+.|+|++|.++.  ++.+   .++|+.|+
T Consensus       222 ~~L~~L~L~--~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~---lp~sL~~L~Ls~N~L~~--Lp~l---p~~L~~L~  288 (788)
T PRK15387        222 AHITTLVIP--DNNLTSLPAL---PPELRTLEVSGNQLTSLPV---LPPGLLELSIFSNPLTH--LPAL---PSGLCKLW  288 (788)
T ss_pred             cCCCEEEcc--CCcCCCCCCC---CCCCcEEEecCCccCcccC---cccccceeeccCCchhh--hhhc---hhhcCEEE
Confidence            355665544  4567778853   5889999999987654 32   24688888888887642  2322   24566677


Q ss_pred             eeeCCCCCccccCCCCCcCEEEcCCCc
Q 014120           90 INNCPGLKSLQLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        90 L~~c~~l~~l~l~~~~~L~~L~l~~c~  116 (430)
                      +++|. ++.+.. ..++|+.|++++|.
T Consensus       289 Ls~N~-Lt~LP~-~p~~L~~LdLS~N~  313 (788)
T PRK15387        289 IFGNQ-LTSLPV-LPPGLQELSVSDNQ  313 (788)
T ss_pred             CcCCc-cccccc-cccccceeECCCCc
Confidence            76653 333321 13566666666653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.43  E-value=1.6e-08  Score=97.27  Aligned_cols=271  Identities=15%  Similarity=0.189  Sum_probs=162.5

Q ss_pred             cccCCCCccEEEEcCccCCCC----CCCCCCCCCCEEEEeeec-CChHHHHHHhcCCCCccEEEeeeCCCCCc----ccc
Q 014120           31 IVFYLKSIYVLDFEFCKLEPP----RSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKS----LQL  101 (430)
Q Consensus        31 ~l~~~~~L~~L~Ls~~~~~~~----~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~----l~l  101 (430)
                      ..-.|+++++|.+.+|.....    .....+++|+.|+|..|. +|+..+..+..+||+|++|++++|+.++.    -..
T Consensus       159 ~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~  238 (483)
T KOG4341|consen  159 FASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQ  238 (483)
T ss_pred             HhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHh
Confidence            344599999999999874431    233679999999999975 59998998999999999999999987665    234


Q ss_pred             CCCCCcCEEEcCCCcCCceE-----eEeeccceeEEEeec-CCCCceec----cCCCCcCceEEccCC-CCChHHHHHHh
Q 014120          102 LGLNKLKEIKLDSNRCGLER-----VYINGVNVHSVDIKV-YLEPCEVN----VSSCKNLTHLRLDGL-SITDKWLYNQI  170 (430)
Q Consensus       102 ~~~~~L~~L~l~~c~~~l~~-----l~i~~p~L~~L~l~~-~~~~~~~~----~~~l~~L~~L~L~~~-~i~~~~l~~l~  170 (430)
                      .|+..++.+-..+|. ..+.     +.-.++.+..+++.. ..+. ..+    -.+|..|+.|..+++ .+++..+..+.
T Consensus       239 rG~~~l~~~~~kGC~-e~~le~l~~~~~~~~~i~~lnl~~c~~lT-D~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg  316 (483)
T KOG4341|consen  239 RGCKELEKLSLKGCL-ELELEALLKAAAYCLEILKLNLQHCNQLT-DEDLWLIACGCHALQVLCYSSCTDITDEVLWALG  316 (483)
T ss_pred             ccchhhhhhhhcccc-cccHHHHHHHhccChHhhccchhhhcccc-chHHHHHhhhhhHhhhhcccCCCCCchHHHHHHh
Confidence            577777777777776 2211     111233333333222 1111 111    135677888888765 56667778888


Q ss_pred             cCCCccceeccccccccccccc-----cccccceEecccccccccc-----cccCCCcceEEecceeeEEecccccccee
Q 014120          171 SELPFLEYLALHYCMKLRSINI-----SSPRLKELVFERCEELVEF-----ELDTPNLSIFKCFNYVESFSSNALALSQT  240 (430)
Q Consensus       171 ~~~p~Le~L~L~~c~~l~~l~~-----~~~~L~~L~l~~c~~L~~~-----~i~~p~L~~~~~~~~~~~~~~~~~sL~~v  240 (430)
                      .++++|+.|.+..|+.+.....     ..+.|+.+++..|...++-     ....|.++.+......             
T Consensus       317 ~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce-------------  383 (483)
T KOG4341|consen  317 QHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCE-------------  383 (483)
T ss_pred             cCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhh-------------
Confidence            8888899998888886643322     3577888888877544322     2333444443332110             


Q ss_pred             EEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHH
Q 014120          241 LLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCL  320 (430)
Q Consensus       241 ~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~L  320 (430)
                       ..    .+.+.  ..+...-.+...++.+.|.-+........+.   ..  .-++|+++.+..+.+    -+.+.+..+
T Consensus       384 -~i----tD~gi--~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~---l~--~c~~Leri~l~~~q~----vtk~~i~~~  447 (483)
T KOG4341|consen  384 -LI----TDEGI--RHLSSSSCSLEGLEVLELDNCPLITDATLEH---LS--ICRNLERIELIDCQD----VTKEAISRF  447 (483)
T ss_pred             -hh----hhhhh--hhhhhccccccccceeeecCCCCchHHHHHH---Hh--hCcccceeeeechhh----hhhhhhHHH
Confidence             00    00000  0112222233455555665555432222111   11  235889888877641    123344677


Q ss_pred             HhcCCCCceeeE
Q 014120          321 LWITPHAETLSI  332 (430)
Q Consensus       321 L~~cP~Le~L~i  332 (430)
                      -..+||+++.-.
T Consensus       448 ~~~lp~i~v~a~  459 (483)
T KOG4341|consen  448 ATHLPNIKVHAY  459 (483)
T ss_pred             HhhCccceehhh
Confidence            899999987665

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.39  E-value=5.2e-07  Score=96.45  Aligned_cols=195  Identities=16%  Similarity=0.188  Sum_probs=104.6

Q ss_pred             hCCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120           10 ASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (430)
Q Consensus        10 ~~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L   88 (430)
                      ..+..++.  +.......+|..+  .++|+.|+|+++.+.. |..+  +++|++|++++|.++.  ++..+  .++|+.|
T Consensus       177 ~~~~~~L~--L~~~~LtsLP~~I--p~~L~~L~Ls~N~LtsLP~~l--~~nL~~L~Ls~N~Lts--LP~~l--~~~L~~L  246 (754)
T PRK15370        177 KNNKTELR--LKILGLTTIPACI--PEQITTLILDNNELKSLPENL--QGNIKTLYANSNQLTS--IPATL--PDTIQEM  246 (754)
T ss_pred             ccCceEEE--eCCCCcCcCCccc--ccCCcEEEecCCCCCcCChhh--ccCCCEEECCCCcccc--CChhh--hccccEE
Confidence            34454444  4444567778655  3578999999887654 3322  3689999999887752  22212  2468888


Q ss_pred             EeeeCCCCCccccCCCCCcCEEEcCCCcCCceEeEee-ccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHH
Q 014120           89 NINNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYIN-GVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWL  166 (430)
Q Consensus        89 ~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~-~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l  166 (430)
                      +|++|. ++.+...-..+|+.|++++|.  +..+.-. .++|+.|++++.... .+..+.  ++|+.|++++|.++  .+
T Consensus       247 ~Ls~N~-L~~LP~~l~s~L~~L~Ls~N~--L~~LP~~l~~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt--~L  319 (754)
T PRK15370        247 ELSINR-ITELPERLPSALQSLDLFHNK--ISCLPENLPEELRYLSVYDNSIRTLPAHLP--SGITHLNVQSNSLT--AL  319 (754)
T ss_pred             ECcCCc-cCcCChhHhCCCCEEECcCCc--cCccccccCCCCcEEECCCCccccCcccch--hhHHHHHhcCCccc--cC
Confidence            888875 333322212567788887543  3333211 346777777763222 111111  35666677766663  22


Q ss_pred             HHHhcCCCccceecccccccccccccc-ccccceEeccccccccccccc-CCCcceEEecc
Q 014120          167 YNQISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEFELD-TPNLSIFKCFN  225 (430)
Q Consensus       167 ~~l~~~~p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c~~L~~~~i~-~p~L~~~~~~~  225 (430)
                      +..+  .++|+.|++++|. +..++.. +++|+.|++++| +++.+.-. .++|..+...+
T Consensus       320 P~~l--~~sL~~L~Ls~N~-Lt~LP~~l~~sL~~L~Ls~N-~L~~LP~~lp~~L~~LdLs~  376 (754)
T PRK15370        320 PETL--PPGLKTLEAGENA-LTSLPASLPPELQVLDVSKN-QITVLPETLPPTITTLDVSR  376 (754)
T ss_pred             Cccc--cccceeccccCCc-cccCChhhcCcccEEECCCC-CCCcCChhhcCCcCEEECCC
Confidence            2211  2466666665543 3334332 346666666666 44433211 13444444443

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.36  E-value=2.1e-07  Score=81.68  Aligned_cols=130  Identities=22%  Similarity=0.187  Sum_probs=44.0

Q ss_pred             cccCCCCccEEEEcCccCCCCCCCC-CCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc--c-CCCCC
Q 014120           31 IVFYLKSIYVLDFEFCKLEPPRSTV-TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--L-LGLNK  106 (430)
Q Consensus        31 ~l~~~~~L~~L~Ls~~~~~~~~~~~-~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~--l-~~~~~  106 (430)
                      .+.++.+++.|+|.|+.+.....++ .+.+|+.|+|++|.++.-  . -+..++.|+.|+++++.- +.+.  + ..+++
T Consensus        14 ~~~n~~~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~~l--~-~l~~L~~L~~L~L~~N~I-~~i~~~l~~~lp~   89 (175)
T PF14580_consen   14 QYNNPVKLRELNLRGNQISTIENLGATLDKLEVLDLSNNQITKL--E-GLPGLPRLKTLDLSNNRI-SSISEGLDKNLPN   89 (175)
T ss_dssp             ----------------------S--TT-TT--EEE-TTS--S----T-T----TT--EEE--SS----S-CHHHHHH-TT
T ss_pred             ccccccccccccccccccccccchhhhhcCCCEEECCCCCCccc--c-CccChhhhhhcccCCCCC-CccccchHHhCCc
Confidence            3445667788888887665533444 577888888888877431  1 244567777777777542 2221  1 23566


Q ss_pred             cCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh-HHH-HHHhcCCCccceecccc
Q 014120          107 LKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD-KWL-YNQISELPFLEYLALHY  183 (430)
Q Consensus       107 L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~l-~~l~~~~p~Le~L~L~~  183 (430)
                      |++|.++++.  +.+                 ...-..++.+++|+.|+|.+|.+++ ... ...+..+|+|+.||-..
T Consensus        90 L~~L~L~~N~--I~~-----------------l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen   90 LQELYLSNNK--ISD-----------------LNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             --EEE-TTS-----S-----------------CCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             CCEEECcCCc--CCC-----------------hHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            6666666543  110                 0011345678899999999998876 222 33667788888888653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.26  E-value=6.5e-08  Score=101.22  Aligned_cols=48  Identities=29%  Similarity=0.291  Sum_probs=31.6

Q ss_pred             CccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecC
Q 014120           23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV   70 (430)
Q Consensus        23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~   70 (430)
                      +....+|..++...+|+.|....|.+.. |.....+.+|++|+|..|.+
T Consensus       274 N~l~~lp~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L  322 (1081)
T KOG0618|consen  274 NRLVALPLRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNL  322 (1081)
T ss_pred             hhHHhhHHHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccc
Confidence            3456666666666666666666665543 34455688888888888876

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.24  E-value=2.9e-06  Score=90.83  Aligned_cols=44  Identities=18%  Similarity=0.218  Sum_probs=19.6

Q ss_pred             CccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecC
Q 014120           23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV   70 (430)
Q Consensus        23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~   70 (430)
                      +....+|..++  .+|+.|++++|.+.. |..+  .++|+.|+|++|.+
T Consensus       209 N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l--~~~L~~L~Ls~N~L  253 (754)
T PRK15370        209 NELKSLPENLQ--GNIKTLYANSNQLTSIPATL--PDTIQEMELSINRI  253 (754)
T ss_pred             CCCCcCChhhc--cCCCEEECCCCccccCChhh--hccccEEECcCCcc
Confidence            34445554433  355555555544332 2111  23455555555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.8e-07  Score=90.51  Aligned_cols=150  Identities=21%  Similarity=0.212  Sum_probs=78.9

Q ss_pred             CCCccEEEEcCccCCCC---CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc--cCCCCCcCE
Q 014120           35 LKSIYVLDFEFCKLEPP---RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLGLNKLKE  109 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~~---~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~--l~~~~~L~~  109 (430)
                      +++|+.|+|+.+.+..|   ..-..+++|+.|.|+.|.+++..+..+...||+|+.|.|.++.++..-.  ..-+..|+.
T Consensus       171 Lp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~  250 (505)
T KOG3207|consen  171 LPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQE  250 (505)
T ss_pred             cccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence            45666666666554432   1123466677777777777666666666677777777776664321111  111245555


Q ss_pred             EEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHH-----HhcCCCccceeccccc
Q 014120          110 IKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN-----QISELPFLEYLALHYC  184 (430)
Q Consensus       110 L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~-----l~~~~p~Le~L~L~~c  184 (430)
                      |+++++. .+.                  .+..-..+.++.|..|+++.+.+++-.+++     --..+|.|+.|++...
T Consensus       251 LdLs~N~-li~------------------~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N  311 (505)
T KOG3207|consen  251 LDLSNNN-LID------------------FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN  311 (505)
T ss_pred             ccccCCc-ccc------------------cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC
Confidence            5555543 110                  000122345667777777777765422222     2456788888887654


Q ss_pred             cc--cccccc--cccccceEecc
Q 014120          185 MK--LRSINI--SSPRLKELVFE  203 (430)
Q Consensus       185 ~~--l~~l~~--~~~~L~~L~l~  203 (430)
                      +.  +.++..  ..++|+.|.+.
T Consensus       312 ~I~~w~sl~~l~~l~nlk~l~~~  334 (505)
T KOG3207|consen  312 NIRDWRSLNHLRTLENLKHLRIT  334 (505)
T ss_pred             ccccccccchhhccchhhhhhcc
Confidence            33  222222  13555555544

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.10  E-value=2.9e-08  Score=95.01  Aligned_cols=187  Identities=21%  Similarity=0.207  Sum_probs=110.2

Q ss_pred             EEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120           16 LKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        16 L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      .+++...+....+|+.++....++.|+.+++.+.. |...+++++|+.|+.++|.+..  +..-++.|-.|+.++..++.
T Consensus        71 ~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n~~~e--l~~~i~~~~~l~dl~~~~N~  148 (565)
T KOG0472|consen   71 TVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSNELKE--LPDSIGRLLDLEDLDATNNQ  148 (565)
T ss_pred             eEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhccccceee--cCchHHHHhhhhhhhccccc
Confidence            34566667788888888888888888888877544 6777888888888888886522  22334555566666665543


Q ss_pred             CC------------CccccC------------CCCCcCEEEcCCCcCCceEeEee---ccceeEEEeecCCCCceeccCC
Q 014120           95 GL------------KSLQLL------------GLNKLKEIKLDSNRCGLERVYIN---GVNVHSVDIKVYLEPCEVNVSS  147 (430)
Q Consensus        95 ~l------------~~l~l~------------~~~~L~~L~l~~c~~~l~~l~i~---~p~L~~L~l~~~~~~~~~~~~~  147 (430)
                      ..            ..+.+.            ...+|++++...+  .++.+.-.   ..+|+.|++....+.+-..|++
T Consensus       149 i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N--~L~tlP~~lg~l~~L~~LyL~~Nki~~lPef~g  226 (565)
T KOG0472|consen  149 ISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN--LLETLPPELGGLESLELLYLRRNKIRFLPEFPG  226 (565)
T ss_pred             cccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh--hhhcCChhhcchhhhHHHHhhhcccccCCCCCc
Confidence            21            011110            1234555544332  22222211   2333333444422222337778


Q ss_pred             CCcCceEEccCCCCChHHHHH-HhcCCCccceecccccccccccccc---ccccceEeccccccccc
Q 014120          148 CKNLTHLRLDGLSITDKWLYN-QISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVE  210 (430)
Q Consensus       148 l~~L~~L~L~~~~i~~~~l~~-l~~~~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~  210 (430)
                      |..|+.+++..|.|  +.++. ...+++++..||+.+ ++++.+|..   ..+|.+|++++. .++.
T Consensus       227 cs~L~Elh~g~N~i--~~lpae~~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN-~is~  289 (565)
T KOG0472|consen  227 CSLLKELHVGENQI--EMLPAEHLKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNN-DISS  289 (565)
T ss_pred             cHHHHHHHhcccHH--HhhHHHHhcccccceeeeccc-cccccCchHHHHhhhhhhhcccCC-cccc
Confidence            88888888888877  66665 455788888888854 345555543   355666777665 3443

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=98.04  E-value=7.3e-08  Score=82.24  Aligned_cols=137  Identities=18%  Similarity=0.246  Sum_probs=93.5

Q ss_pred             ecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc
Q 014120           20 VGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS   98 (430)
Q Consensus        20 ~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~   98 (430)
                      ++.+....+|+.+-.+++|++|+++++.+.. |..+++++.||.|++..|.+..  ++.-++.+|.||.|||+++.. .+
T Consensus        40 LSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~--lprgfgs~p~levldltynnl-~e  116 (264)
T KOG0617|consen   40 LSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNI--LPRGFGSFPALEVLDLTYNNL-NE  116 (264)
T ss_pred             cccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhc--CccccCCCchhhhhhcccccc-cc
Confidence            3446788889999999999999999988765 7788999999999999886632  355678899999999998642 21


Q ss_pred             ccc----CCCCCcCEEEcCCCcCCceEeEe---eccceeEEEeec-CCCCceeccCCCCcCceEEccCCCC
Q 014120           99 LQL----LGLNKLKEIKLDSNRCGLERVYI---NGVNVHSVDIKV-YLEPCEVNVSSCKNLTHLRLDGLSI  161 (430)
Q Consensus        99 l~l----~~~~~L~~L~l~~c~~~l~~l~i---~~p~L~~L~l~~-~~~~~~~~~~~l~~L~~L~L~~~~i  161 (430)
                      -.+    ..+..|+.|.++.+.  ++-+.-   ..++|+-|.+.. .....+-.++.+..|+.|++.+|++
T Consensus       117 ~~lpgnff~m~tlralyl~dnd--fe~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgnrl  185 (264)
T KOG0617|consen  117 NSLPGNFFYMTTLRALYLGDND--FEILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGNRL  185 (264)
T ss_pred             ccCCcchhHHHHHHHHHhcCCC--cccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhccccee
Confidence            111    112344444454433  211111   145666666655 2333346678888999999999998

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.97  E-value=1e-06  Score=81.62  Aligned_cols=128  Identities=20%  Similarity=0.128  Sum_probs=88.2

Q ss_pred             CCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEe
Q 014120           56 TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDI  134 (430)
Q Consensus        56 ~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l  134 (430)
                      .+..|++++|++|.++.  +.....-.|.++.|+++++.....-++..+++|++|+++++. ..+.......-++++|.+
T Consensus       282 TWq~LtelDLS~N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~L  359 (490)
T KOG1259|consen  282 TWQELTELDLSGNLITQ--IDESVKLAPKLRRLILSQNRIRTVQNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKL  359 (490)
T ss_pred             hHhhhhhccccccchhh--hhhhhhhccceeEEeccccceeeehhhhhcccceEeecccchhHhhhhhHhhhcCEeeeeh
Confidence            46789999999998743  233445569999999999876655566667999999999864 111111223567788888


Q ss_pred             ecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccc
Q 014120          135 KVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM  185 (430)
Q Consensus       135 ~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~  185 (430)
                      +++.+..-.++.++-+|..|++++|+|.+-.-...++++|.||.+.+.+.+
T Consensus       360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCC
Confidence            774333234456667888899999998432223467889999988886544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.96  E-value=2.2e-06  Score=80.97  Aligned_cols=81  Identities=26%  Similarity=0.331  Sum_probs=40.4

Q ss_pred             cCCCCcCceEEccCCCCChH---HHHHHhcCCCccceecccccccc--cccc-----ccccccceEeccccccccc----
Q 014120          145 VSSCKNLTHLRLDGLSITDK---WLYNQISELPFLEYLALHYCMKL--RSIN-----ISSPRLKELVFERCEELVE----  210 (430)
Q Consensus       145 ~~~l~~L~~L~L~~~~i~~~---~l~~l~~~~p~Le~L~L~~c~~l--~~l~-----~~~~~L~~L~l~~c~~L~~----  210 (430)
                      +..++.|+.+.+..|.|...   .+..-+..||+|+.|+|.++.--  .+..     .+.++|+.|++++| .++.    
T Consensus       181 ~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc-ll~~~Ga~  259 (382)
T KOG1909|consen  181 FQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC-LLENEGAI  259 (382)
T ss_pred             HHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc-ccccccHH
Confidence            44556666666666665432   22334556677777776543210  0110     11345666677666 3331    


Q ss_pred             -----ccccCCCcceEEecce
Q 014120          211 -----FELDTPNLSIFKCFNY  226 (430)
Q Consensus       211 -----~~i~~p~L~~~~~~~~  226 (430)
                           +.-.+|+|+.+.+.|+
T Consensus       260 a~~~al~~~~p~L~vl~l~gN  280 (382)
T KOG1909|consen  260 AFVDALKESAPSLEVLELAGN  280 (382)
T ss_pred             HHHHHHhccCCCCceeccCcc
Confidence                 1122566666665444

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.93  E-value=9.5e-06  Score=71.26  Aligned_cols=100  Identities=21%  Similarity=0.207  Sum_probs=38.1

Q ss_pred             EEEEEecCCccccCCcccc-CCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120           15 ELKLDVGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (430)
Q Consensus        15 ~L~L~~~~~~~~~LP~~l~-~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c   93 (430)
                      .-.|++.++.+..+. .+. .+.+|+.|+|++|.+..-..+..+++|++|++++|.++.-. ..+...+|+|++|+++++
T Consensus        21 ~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N   98 (175)
T PF14580_consen   21 LRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLEGLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNN   98 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S--TT----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS
T ss_pred             ccccccccccccccc-chhhhhcCCCEEECCCCCCccccCccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCC
Confidence            334455555566664 454 47899999999998776567888999999999999985431 223356899999999987


Q ss_pred             CC--CCcc-ccCCCCCcCEEEcCCCc
Q 014120           94 PG--LKSL-QLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        94 ~~--l~~l-~l~~~~~L~~L~l~~c~  116 (430)
                      .-  +..+ .+..+++|+.|++.+++
T Consensus        99 ~I~~l~~l~~L~~l~~L~~L~L~~NP  124 (175)
T PF14580_consen   99 KISDLNELEPLSSLPKLRVLSLEGNP  124 (175)
T ss_dssp             ---SCCCCGGGGG-TT--EEE-TT-G
T ss_pred             cCCChHHhHHHHcCCCcceeeccCCc
Confidence            52  3332 34567888888888765

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=97.81  E-value=1.1e-07  Score=91.14  Aligned_cols=154  Identities=21%  Similarity=0.246  Sum_probs=74.1

Q ss_pred             CccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcccc
Q 014120           23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQL  101 (430)
Q Consensus        23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l  101 (430)
                      +.+..+|+.++++.++..|++.++.+.. |+...++..|+.|+..+|.+  +.++.-++++..|+.|++..++...-..+
T Consensus       147 N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L--~tlP~~lg~l~~L~~LyL~~Nki~~lPef  224 (565)
T KOG0472|consen  147 NQISSLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLL--ETLPPELGGLESLELLYLRRNKIRFLPEF  224 (565)
T ss_pred             cccccCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhh--hcCChhhcchhhhHHHHhhhcccccCCCC
Confidence            4566666666666666666666654332 33334466666666665543  22344455555666666665543222234


Q ss_pred             CCCCCcCEEEcCCCcCCceEe----EeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCcc
Q 014120          102 LGLNKLKEIKLDSNRCGLERV----YINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFL  176 (430)
Q Consensus       102 ~~~~~L~~L~l~~c~~~l~~l----~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~L  176 (430)
                      .||..|+++.+..+.  ++.+    .-+.+++..|++...... .+.++--+++|.+|++++|.|  ..++..++++ +|
T Consensus       225 ~gcs~L~Elh~g~N~--i~~lpae~~~~L~~l~vLDLRdNklke~Pde~clLrsL~rLDlSNN~i--s~Lp~sLgnl-hL  299 (565)
T KOG0472|consen  225 PGCSLLKELHVGENQ--IEMLPAEHLKHLNSLLVLDLRDNKLKEVPDEICLLRSLERLDLSNNDI--SSLPYSLGNL-HL  299 (565)
T ss_pred             CccHHHHHHHhcccH--HHhhHHHHhcccccceeeeccccccccCchHHHHhhhhhhhcccCCcc--ccCCcccccc-ee
Confidence            455555555555432  1111    112344444444441111 123334445555555555555  3344444444 44


Q ss_pred             ceecccc
Q 014120          177 EYLALHY  183 (430)
Q Consensus       177 e~L~L~~  183 (430)
                      +.|.+.+
T Consensus       300 ~~L~leG  306 (565)
T KOG0472|consen  300 KFLALEG  306 (565)
T ss_pred             eehhhcC
Confidence            4444443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.80  E-value=3.8e-06  Score=85.97  Aligned_cols=61  Identities=26%  Similarity=0.381  Sum_probs=30.2

Q ss_pred             CCCCCCEEEEeeec-CChHHHHHHhcCCCCccEEEeeeCCCCCcccc----CCCCCcCEEEcCCCc
Q 014120           56 TLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSLQL----LGLNKLKEIKLDSNR  116 (430)
Q Consensus        56 ~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l----~~~~~L~~L~l~~c~  116 (430)
                      .+++|+.|+++++. +++.++..+...||+|+.|.+.+|..++...+    .+|+.|++|+++.|.
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~  306 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH  306 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence            34555555555554 45555555555555555555555544333221    234555555555554

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.65  E-value=1.9e-05  Score=56.67  Aligned_cols=56  Identities=27%  Similarity=0.330  Sum_probs=24.3

Q ss_pred             CccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120           37 SIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (430)
Q Consensus        37 ~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c   93 (430)
                      +|++|++++|.+..  +..|.++++|++|++++|.++.-. +..+.++++|++|++++|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~-~~~f~~l~~L~~L~l~~N   59 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIP-PDAFSNLPNLRYLDLSNN   59 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEE-TTTTTTSTTESEEEETSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccC-HHHHcCCCCCCEEeCcCC
Confidence            34555555543322  234445555555555555442110 123444444555544443

...

>PF08387 FBD: FBD; InterPro: IPR013596 This region is found in F-box (IPR001810 from INTERPRO) and other domain containing plant proteins; it is repeated in two family members

Probab=97.62  E-value=5.5e-06  Score=57.08  Aligned_cols=41  Identities=15%  Similarity=0.198  Sum_probs=38.0

Q ss_pred             CCCccccccccceeeeeeeeccccccceeeeeecCchhhHHH
Q 014120          365 LPLSCWKHCIKEVKIECTEKYPIRQINRESFSSEDGDIMEKI  406 (430)
Q Consensus       365 ~~~~c~~~~Lk~v~i~~~~~~~~~~~~~~~~~~~~~~~l~~~  406 (430)
                      .+++|+.++||.|+++++.+... ++++++|+++|+++||++
T Consensus         7 ~~p~Cl~s~Lk~v~~~~f~g~~~-e~~f~~yil~na~~Lk~m   47 (51)
T PF08387_consen    7 SVPECLLSHLKFVEIKGFRGEEN-ELEFAKYILENAPVLKKM   47 (51)
T ss_pred             CCccchhheeEEEEEEeeeCcHH-HHHHHHHHHhhhhhhcEE
Confidence            57999999999999999988888 699999999999999985

Its precise function is unknown, but it is thought to be associated with nuclear processes []. In fact, several family members are annotated as being similar to transcription factors.

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.60  E-value=2.9e-05  Score=82.46  Aligned_cols=146  Identities=20%  Similarity=0.231  Sum_probs=90.6

Q ss_pred             CCCccEEEEcCccCCC---C-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-ccCCCCCcCE
Q 014120           35 LKSIYVLDFEFCKLEP---P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKE  109 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~---~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~l~~~~~L~~  109 (430)
                      -++|++|+++|.....   | ....-||+|++|.+++..+....+..+..++|+|+.||++++. ++.+ .++.+++|+.
T Consensus       121 r~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl~GIS~LknLq~  199 (699)
T KOG3665|consen  121 RQNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTN-ISNLSGISRLKNLQV  199 (699)
T ss_pred             HHhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCC-ccCcHHHhccccHHH
Confidence            3578888888854222   2 2234589999999998888666678888899999999999853 3322 2333445555


Q ss_pred             EEcCCCcCCceE---e--EeeccceeEEEeec-CCC--C----ce-eccCCCCcCceEEccCCCCChHHHHHHhcCCCcc
Q 014120          110 IKLDSNRCGLER---V--YINGVNVHSVDIKV-YLE--P----CE-VNVSSCKNLTHLRLDGLSITDKWLYNQISELPFL  176 (430)
Q Consensus       110 L~l~~c~~~l~~---l--~i~~p~L~~L~l~~-~~~--~----~~-~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~L  176 (430)
                      |.+.+-.  +..   +  -+...+|+.|+++. ...  +    .- .....+|+|+.|+.+++.++++.++.++..-|+|
T Consensus       200 L~mrnLe--~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L  277 (699)
T KOG3665|consen  200 LSMRNLE--FESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL  277 (699)
T ss_pred             HhccCCC--CCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence            4444321  111   0  11346677777766 111  1    00 1123478888888888888777777777777777


Q ss_pred             ceecccc
Q 014120          177 EYLALHY  183 (430)
Q Consensus       177 e~L~L~~  183 (430)
                      +.+..-+
T Consensus       278 ~~i~~~~  284 (699)
T KOG3665|consen  278 QQIAALD  284 (699)
T ss_pred             hhhhhhh
Confidence            7776543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.52  E-value=2.9e-05  Score=74.72  Aligned_cols=190  Identities=19%  Similarity=0.190  Sum_probs=101.9

Q ss_pred             EecCCccccCCccccC-CCCccEEEEcCccCC--CCCCCCCCCCCCEEEEee-ecCChHHHHHHh---------------
Q 014120           19 DVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLE--PPRSTVTLFSLRKLCLSF-VHVDDEVIRDMV---------------   79 (430)
Q Consensus        19 ~~~~~~~~~LP~~l~~-~~~L~~L~Ls~~~~~--~~~~~~~l~~L~~L~Ls~-~~~~~~~l~~l~---------------   79 (430)
                      .+..+.+..+|+..|+ .++|++|+|+++.+.  .|..|.++++|.+|.+.+ |.|++-. ...+               
T Consensus        73 rLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~-k~~F~gL~slqrLllNan~  151 (498)
T KOG4237|consen   73 RLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP-KGAFGGLSSLQRLLLNANH  151 (498)
T ss_pred             EeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh-hhHhhhHHHHHHHhcChhh
Confidence            3333678888887666 889999999987643  467888888888888777 6665421 1222               


Q ss_pred             ---------cCCCCccEEEeeeCCC--CCccccCCCCCcCEEEcCCCc----CCceEe-------Ee--e---c------
Q 014120           80 ---------AGCPLIEYININNCPG--LKSLQLLGLNKLKEIKLDSNR----CGLERV-------YI--N---G------  126 (430)
Q Consensus        80 ---------~~~p~Le~L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~----~~l~~l-------~i--~---~------  126 (430)
                               ..+++|..|.+..+..  +..-.+.+...++++.+..+.    ..+++.       .+  +   +      
T Consensus       152 i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~rl  231 (498)
T KOG4237|consen  152 INCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPYRL  231 (498)
T ss_pred             hcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchHHH
Confidence                     2334444444433211  111112223344444332221    011111       00  0   0      


Q ss_pred             --------------cceeEE--EeecCCCC----ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccc
Q 014120          127 --------------VNVHSV--DIKVYLEP----CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMK  186 (430)
Q Consensus       127 --------------p~L~~L--~l~~~~~~----~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~  186 (430)
                                    ..++.+  .+.+...+    ....|.++++|++|+|++|.+++ .-+..+.+...+++|.+...+ 
T Consensus       232 ~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~-i~~~aFe~~a~l~eL~L~~N~-  309 (498)
T KOG4237|consen  232 YYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITR-IEDGAFEGAAELQELYLTRNK-  309 (498)
T ss_pred             HHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccch-hhhhhhcchhhhhhhhcCcch-
Confidence                          011111  11111111    12347889999999999999943 223366778888999886533 


Q ss_pred             ccccc----ccccccceEeccccccccccc
Q 014120          187 LRSIN----ISSPRLKELVFERCEELVEFE  212 (430)
Q Consensus       187 l~~l~----~~~~~L~~L~l~~c~~L~~~~  212 (430)
                      ++.+.    ....+|+.|++.+. +++.+.
T Consensus       310 l~~v~~~~f~~ls~L~tL~L~~N-~it~~~  338 (498)
T KOG4237|consen  310 LEFVSSGMFQGLSGLKTLSLYDN-QITTVA  338 (498)
T ss_pred             HHHHHHHhhhccccceeeeecCC-eeEEEe
Confidence            22221    12467888888887 666443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=97.50  E-value=0.00016  Score=51.77  Aligned_cols=56  Identities=25%  Similarity=0.328  Sum_probs=44.5

Q ss_pred             ceEEEEEecCCccccCCccccC-CCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecC
Q 014120           13 VKELKLDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHV   70 (430)
Q Consensus        13 v~~L~L~~~~~~~~~LP~~l~~-~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~   70 (430)
                      ++.++  +..+....+|+..|. +++|++|+++++.+..  +..|.++++|++|++++|.+
T Consensus         3 L~~L~--l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    3 LESLD--LSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             ESEEE--ETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcEEE--CCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            44455  445678889976554 9999999999987654  57889999999999999864

...

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.44  E-value=1.7e-05  Score=76.28  Aligned_cols=63  Identities=19%  Similarity=0.207  Sum_probs=47.2

Q ss_pred             CCccEEEEcCccC--CCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc
Q 014120           36 KSIYVLDFEFCKL--EPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL   99 (430)
Q Consensus        36 ~~L~~L~Ls~~~~--~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l   99 (430)
                      .+-+.++|..+.+  .++..|+.+++||+|+|++|.|+..+ +..+.+++.|-.|-+.++..++++
T Consensus        67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~-p~AF~GL~~l~~Lvlyg~NkI~~l  131 (498)
T KOG4237|consen   67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIA-PDAFKGLASLLSLVLYGNNKITDL  131 (498)
T ss_pred             CcceEEEeccCCcccCChhhccchhhhceecccccchhhcC-hHhhhhhHhhhHHHhhcCCchhhh
Confidence            3456777777654  44688999999999999999986543 556778888888888776665554

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=97.38  E-value=8.6e-05  Score=70.43  Aligned_cols=204  Identities=17%  Similarity=0.145  Sum_probs=130.6

Q ss_pred             hhHHHHHHhCCceEEEEEecC----Cccc-------cCCccccCCCCccEEEEcCccCCC--C----CCCCCCCCCCEEE
Q 014120            2 NRCLSYAFASNVKELKLDVGC----CRIY-------NLPQIVFYLKSIYVLDFEFCKLEP--P----RSTVTLFSLRKLC   64 (430)
Q Consensus         2 ~~wi~~a~~~~v~~L~L~~~~----~~~~-------~LP~~l~~~~~L~~L~Ls~~~~~~--~----~~~~~l~~L~~L~   64 (430)
                      .+||..+.++.-+.-..++++    ....       .|.+.+..++.|++|+||.+.+.+  +    ..+.++.+|+.|.
T Consensus        47 a~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~  126 (382)
T KOG1909|consen   47 ARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELY  126 (382)
T ss_pred             HHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHh
Confidence            368888877655444455543    1222       333445567899999999987655  2    2345789999999


Q ss_pred             EeeecCChHH------------HHHHhcCCCCccEEEeeeCCC----CCc--cccCCCCCcCEEEcCCCcCCceEe----
Q 014120           65 LSFVHVDDEV------------IRDMVAGCPLIEYININNCPG----LKS--LQLLGLNKLKEIKLDSNRCGLERV----  122 (430)
Q Consensus        65 Ls~~~~~~~~------------l~~l~~~~p~Le~L~L~~c~~----l~~--l~l~~~~~L~~L~l~~c~~~l~~l----  122 (430)
                      |.+|.+...+            ....+..-|.|+.+....+..    -+.  ..+..++.|+.+.+..+.-..+.+    
T Consensus       127 L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~  206 (382)
T KOG1909|consen  127 LNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALA  206 (382)
T ss_pred             hhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHH
Confidence            9999874322            112344667899998887653    111  123345788888887764111112    


Q ss_pred             --EeeccceeEEEeecCCCC------ceeccCCCCcCceEEccCCCCChH----HHHHHhcCCCccceecccccccccc-
Q 014120          123 --YINGVNVHSVDIKVYLEP------CEVNVSSCKNLTHLRLDGLSITDK----WLYNQISELPFLEYLALHYCMKLRS-  189 (430)
Q Consensus       123 --~i~~p~L~~L~l~~~~~~------~~~~~~~l~~L~~L~L~~~~i~~~----~l~~l~~~~p~Le~L~L~~c~~l~~-  189 (430)
                        --.+|+|+.|++..+...      ....++.+++|+.|++++|.+.+.    .+..+-...|.|+.|.+.+|..-.. 
T Consensus       207 eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da  286 (382)
T KOG1909|consen  207 EALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDA  286 (382)
T ss_pred             HHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHH
Confidence              113799999998773222      122356788999999999988662    2334556689999999987753211 


Q ss_pred             ---ccc---cccccceEecccc
Q 014120          190 ---INI---SSPRLKELVFERC  205 (430)
Q Consensus       190 ---l~~---~~~~L~~L~l~~c  205 (430)
                         +..   .-+.|..|++++|
T Consensus       287 ~~~la~~~~ek~dL~kLnLngN  308 (382)
T KOG1909|consen  287 ALALAACMAEKPDLEKLNLNGN  308 (382)
T ss_pred             HHHHHHHHhcchhhHHhcCCcc
Confidence               111   2578999999998

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.26  E-value=1.9e-05  Score=81.30  Aligned_cols=154  Identities=19%  Similarity=0.214  Sum_probs=94.0

Q ss_pred             CccccCCCCccEEEEcCccCCCCCCCC---------------------------------CCCCCCEEEEeeecCChHHH
Q 014120           29 PQIVFYLKSIYVLDFEFCKLEPPRSTV---------------------------------TLFSLRKLCLSFVHVDDEVI   75 (430)
Q Consensus        29 P~~l~~~~~L~~L~Ls~~~~~~~~~~~---------------------------------~l~~L~~L~Ls~~~~~~~~l   75 (430)
                      |-.+|..++|++|.|.+|.+....++.                                 .+-.|.+.+.++|.+.  .+
T Consensus       102 pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~qLe~LIC~~Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~--~m  179 (1096)
T KOG1859|consen  102 PISIFPFRSLRVLELRGCDLSTAKGLQELRHQLEKLICHNSLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV--LM  179 (1096)
T ss_pred             CceeccccceeeEEecCcchhhhhhhHHHHHhhhhhhhhccHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH--hH
Confidence            777888899999999987654311110                                 1224555555555441  11


Q ss_pred             HHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceE
Q 014120           76 RDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHL  154 (430)
Q Consensus        76 ~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L  154 (430)
                      ...+.-+|.||.|+|++|..-+.-.+..|++|++||++.+. ..+..+....-.|+.|.+.++-...-.++.++++|+.|
T Consensus       180 D~SLqll~ale~LnLshNk~~~v~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~L~~L~lrnN~l~tL~gie~LksL~~L  259 (1096)
T KOG1859|consen  180 DESLQLLPALESLNLSHNKFTKVDNLRRLPKLKHLDLSYNCLRHVPQLSMVGCKLQLLNLRNNALTTLRGIENLKSLYGL  259 (1096)
T ss_pred             HHHHHHHHHhhhhccchhhhhhhHHHHhcccccccccccchhccccccchhhhhheeeeecccHHHhhhhHHhhhhhhcc
Confidence            12233457889999998765444466678999999998754 33444443334588888877333223456778888888


Q ss_pred             EccCCCCChHHHHHHhcCCCccceeccccc
Q 014120          155 RLDGLSITDKWLYNQISELPFLEYLALHYC  184 (430)
Q Consensus       155 ~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c  184 (430)
                      ++++|-+.+-.--..+..+..|..|.+.++
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGN  289 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGN  289 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCC
Confidence            888887755222222334556677777654

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.26  E-value=5.4e-05  Score=82.56  Aligned_cols=86  Identities=24%  Similarity=0.305  Sum_probs=46.3

Q ss_pred             cccCCccccC-CCCccEEEEcCccC--CCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-c
Q 014120           25 IYNLPQIVFY-LKSIYVLDFEFCKL--EPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-Q  100 (430)
Q Consensus        25 ~~~LP~~l~~-~~~L~~L~Ls~~~~--~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~  100 (430)
                      ...++..+|. ++.|++|+|++|.-  ..|..++++-+||+|+|+++.+.  .++.-+.++..|.+|++.....+... .
T Consensus       559 l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~--~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~  636 (889)
T KOG4658|consen  559 LLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS--HLPSGLGNLKKLIYLNLEVTGRLESIPG  636 (889)
T ss_pred             hhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc--ccchHHHHHHhhheeccccccccccccc
Confidence            3445544444 66677777776532  22555666667777777766554  23445555556666666655443332 1


Q ss_pred             c-CCCCCcCEEEc
Q 014120          101 L-LGLNKLKEIKL  112 (430)
Q Consensus       101 l-~~~~~L~~L~l  112 (430)
                      + ..+.+|++|.+
T Consensus       637 i~~~L~~Lr~L~l  649 (889)
T KOG4658|consen  637 ILLELQSLRVLRL  649 (889)
T ss_pred             hhhhcccccEEEe
Confidence            1 12355555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.11  E-value=0.00026  Score=70.93  Aligned_cols=168  Identities=21%  Similarity=0.235  Sum_probs=80.5

Q ss_pred             cccCCCCccEEEEcCccCCC-CCCCCCCC-CCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccC-CCCCc
Q 014120           31 IVFYLKSIYVLDFEFCKLEP-PRSTVTLF-SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLL-GLNKL  107 (430)
Q Consensus        31 ~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~-~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~-~~~~L  107 (430)
                      .+...+.++.|.+.++.+.. +.....+. +|+.|++++|.+...  +.-+..+|+|+.|++++|..-...... ..+.|
T Consensus       111 ~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l--~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L  188 (394)
T COG4886         111 ELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESL--PSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNL  188 (394)
T ss_pred             hhhcccceeEEecCCcccccCccccccchhhcccccccccchhhh--hhhhhccccccccccCCchhhhhhhhhhhhhhh
Confidence            33344556666666654333 22223332 666666666654321  223455666666666665432111111 34556


Q ss_pred             CEEEcCCCcCCceEeEe--ecc-ceeEEEeecC-CCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccc
Q 014120          108 KEIKLDSNRCGLERVYI--NGV-NVHSVDIKVY-LEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHY  183 (430)
Q Consensus       108 ~~L~l~~c~~~l~~l~i--~~p-~L~~L~l~~~-~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~  183 (430)
                      +.|+++++.  +..+..  ..+ .|+++.+++. .......+..+.++..+.+.++.+  ..+...+..++.++.|++++
T Consensus       189 ~~L~ls~N~--i~~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n~~--~~~~~~~~~l~~l~~L~~s~  264 (394)
T COG4886         189 NNLDLSGNK--ISDLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNNKL--EDLPESIGNLSNLETLDLSN  264 (394)
T ss_pred             hheeccCCc--cccCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCcee--eeccchhccccccceecccc
Confidence            666665542  333322  122 2555555552 122223445556666666666665  23345556666677777754


Q ss_pred             ccccccccc--cccccceEecccc
Q 014120          184 CMKLRSINI--SSPRLKELVFERC  205 (430)
Q Consensus       184 c~~l~~l~~--~~~~L~~L~l~~c  205 (430)
                      +. +..++.  ...+++.|++++.
T Consensus       265 n~-i~~i~~~~~~~~l~~L~~s~n  287 (394)
T COG4886         265 NQ-ISSISSLGSLTNLRELDLSGN  287 (394)
T ss_pred             cc-ccccccccccCccCEEeccCc
Confidence            33 222221  1345666666554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=97.06  E-value=0.00043  Score=69.33  Aligned_cols=180  Identities=20%  Similarity=0.176  Sum_probs=104.7

Q ss_pred             EEEEcCccC-CCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCC-CCccEEEeeeCCCCCcc--ccCCCCCcCEEEcCCC
Q 014120           40 VLDFEFCKL-EPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGC-PLIEYININNCPGLKSL--QLLGLNKLKEIKLDSN  115 (430)
Q Consensus        40 ~L~Ls~~~~-~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~-p~Le~L~L~~c~~l~~l--~l~~~~~L~~L~l~~c  115 (430)
                      .++++++.. ........++.++.|++.++.+++  ++...... ++|+.|+++++. ++.+  .+..++.|+.|+++.|
T Consensus        97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~-i~~l~~~~~~l~~L~~L~l~~N  173 (394)
T COG4886          97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNK-IESLPSPLRNLPNLKNLDLSFN  173 (394)
T ss_pred             eeeccccccccCchhhhcccceeEEecCCccccc--Cccccccchhhcccccccccc-hhhhhhhhhccccccccccCCc
Confidence            466666654 323344556788888888887754  23344444 378888888854 3333  5666788888888876


Q ss_pred             cCCceEeEe---eccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccc--c
Q 014120          116 RCGLERVYI---NGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLR--S  189 (430)
Q Consensus       116 ~~~l~~l~i---~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~--~  189 (430)
                      .  +.++..   ..++|+.|.+++..+. .+........|+++.+++|.+  ......+.++..+..+.+.+.+...  .
T Consensus       174 ~--l~~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N~~--~~~~~~~~~~~~l~~l~l~~n~~~~~~~  249 (394)
T COG4886         174 D--LSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI--IELLSSLSNLKNLSGLELSNNKLEDLPE  249 (394)
T ss_pred             h--hhhhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCCcc--eecchhhhhcccccccccCCceeeeccc
Confidence            4  333322   5678888888873332 112223445588888888853  2333445566666666654333222  1


Q ss_pred             ccccccccceEeccccccccccc--ccCCCcceEEeccee
Q 014120          190 INISSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNYV  227 (430)
Q Consensus       190 l~~~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~~  227 (430)
                      .....++++.|+++++ .++++.  ....+++.+.+.|..
T Consensus       250 ~~~~l~~l~~L~~s~n-~i~~i~~~~~~~~l~~L~~s~n~  288 (394)
T COG4886         250 SIGNLSNLETLDLSNN-QISSISSLGSLTNLRELDLSGNS  288 (394)
T ss_pred             hhccccccceeccccc-cccccccccccCccCEEeccCcc
Confidence            1222455788887776 555554  233555566555543

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.05  E-value=0.00023  Score=66.28  Aligned_cols=179  Identities=17%  Similarity=0.095  Sum_probs=105.4

Q ss_pred             CCceEEEEEecC-CccccCCccccCCCCccEEEEcCccCCCC-CCC-CCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGC-CRIYNLPQIVFYLKSIYVLDFEFCKLEPP-RST-VTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~-~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~-~~~-~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      ..|++++|..+. .....+-..+-+++.|+.|+|+.+.+..+ ... ..+.+|++|.|.+..+++......+..+|.+++
T Consensus        71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte  150 (418)
T KOG2982|consen   71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE  150 (418)
T ss_pred             hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence            467777664432 12223333344577889999988877653 111 345688899998888888877888888899999


Q ss_pred             EEeeeCCC----CCccccCC-CCCcCEEEcCCCcCCce-----EeEeeccceeEEEeecC---CCCceeccCCCCcCceE
Q 014120           88 ININNCPG----LKSLQLLG-LNKLKEIKLDSNRCGLE-----RVYINGVNVHSVDIKVY---LEPCEVNVSSCKNLTHL  154 (430)
Q Consensus        88 L~L~~c~~----l~~l~l~~-~~~L~~L~l~~c~~~l~-----~l~i~~p~L~~L~l~~~---~~~~~~~~~~l~~L~~L  154 (430)
                      |+++.++.    +..-.... .+.++++....|. ...     .+.--.|++..+-+...   .......+..+|.+-.|
T Consensus       151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~-~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L  229 (418)
T KOG2982|consen  151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCL-EQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL  229 (418)
T ss_pred             hhhccchhhhhccccccccccchhhhhhhcCCcH-HHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence            88887632    11111111 1456666666664 111     11112566665555431   11112334556677788


Q ss_pred             EccCCCCChHHHHHHhcCCCccceeccccccccccc
Q 014120          155 RLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI  190 (430)
Q Consensus       155 ~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l  190 (430)
                      +|+.++|.+-.--..+.++|.|..|.++..+-...+
T Consensus       230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l  265 (418)
T KOG2982|consen  230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL  265 (418)
T ss_pred             hhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence            888888843222234667888888888776654443

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=97.01  E-value=0.00017  Score=73.81  Aligned_cols=128  Identities=24%  Similarity=0.372  Sum_probs=57.7

Q ss_pred             CCCEEEEeeec--CChHHHHHHhcCCCCccEEEeeeCCCCCccc----cCCCCCcCEEEcCCCcCCce-------EeEee
Q 014120           59 SLRKLCLSFVH--VDDEVIRDMVAGCPLIEYININNCPGLKSLQ----LLGLNKLKEIKLDSNRCGLE-------RVYIN  125 (430)
Q Consensus        59 ~L~~L~Ls~~~--~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~----l~~~~~L~~L~l~~c~~~l~-------~l~i~  125 (430)
                      .++.+.+..+.  ........+...+|+|+.|.+..|..+....    ...++.|+.|+++.|.....       .+...
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~  241 (482)
T KOG1947|consen  162 NLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSI  241 (482)
T ss_pred             HHheeeeecccccccHHHHHHHHhhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhh
Confidence            44444444332  2334444445556666666666665544311    22356666666654210000       00111


Q ss_pred             ccceeEEEeecCC-CCceec----cCCCCcCceEEccCCC-CChHHHHHHhcCCCccceecccccccc
Q 014120          126 GVNVHSVDIKVYL-EPCEVN----VSSCKNLTHLRLDGLS-ITDKWLYNQISELPFLEYLALHYCMKL  187 (430)
Q Consensus       126 ~p~L~~L~l~~~~-~~~~~~----~~~l~~L~~L~L~~~~-i~~~~l~~l~~~~p~Le~L~L~~c~~l  187 (430)
                      +++|+.+++++.. +. ...    ...|++|+.|.+.++. +++..+..+...||.|++|+++.|..+
T Consensus       242 ~~~L~~l~l~~~~~is-d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~  308 (482)
T KOG1947|consen  242 CRKLKSLDLSGCGLVT-DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGL  308 (482)
T ss_pred             cCCcCccchhhhhccC-chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccc
Confidence            2333333332210 11 011    1225566666655554 555566666666666666666655543

>PRK15386 type III secretion protein GogB; Provisional

Probab=96.90  E-value=0.0021  Score=63.71  Aligned_cols=68  Identities=15%  Similarity=0.329  Sum_probs=32.3

Q ss_pred             CCCccEEEEcCccCCC-CCCCCCCC-CCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEc
Q 014120           35 LKSIYVLDFEFCKLEP-PRSTVTLF-SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKL  112 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~-~~~~~~l~-~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l  112 (430)
                      +.+++.|++++|.+.. |    .+| +|++|.+++|.-- ..++..+  .++|++|++++|..+..+.    +.|++|++
T Consensus        51 ~~~l~~L~Is~c~L~sLP----~LP~sLtsL~Lsnc~nL-tsLP~~L--P~nLe~L~Ls~Cs~L~sLP----~sLe~L~L  119 (426)
T PRK15386         51 ARASGRLYIKDCDIESLP----VLPNELTEITIENCNNL-TTLPGSI--PEGLEKLTVCHCPEISGLP----ESVRSLEI  119 (426)
T ss_pred             hcCCCEEEeCCCCCcccC----CCCCCCcEEEccCCCCc-ccCCchh--hhhhhheEccCcccccccc----cccceEEe
Confidence            5666666666664433 2    233 4666666655320 0011111  1356666666665444321    34555555


Q ss_pred             C
Q 014120          113 D  113 (430)
Q Consensus       113 ~  113 (430)
                      .
T Consensus       120 ~  120 (426)
T PRK15386        120 K  120 (426)
T ss_pred             C
Confidence            4

>PLN03150 hypothetical protein; Provisional

Probab=96.89  E-value=0.0011  Score=70.30  Aligned_cols=84  Identities=17%  Similarity=0.160  Sum_probs=50.1

Q ss_pred             CCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeec
Q 014120           59 SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKV  136 (430)
Q Consensus        59 ~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~  136 (430)
                      .++.|+|++|.+++. ++..+..+++|+.|+|++|..-..+  .+..+++|+.|++++|.                 ++|
T Consensus       419 ~v~~L~L~~n~L~g~-ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~-----------------lsg  480 (623)
T PLN03150        419 FIDGLGLDNQGLRGF-IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNS-----------------FNG  480 (623)
T ss_pred             EEEEEECCCCCcccc-CCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCC-----------------CCC
Confidence            367788887776433 3455677788888888776432122  23445666666666553                 001


Q ss_pred             CCCCceeccCCCCcCceEEccCCCCCh
Q 014120          137 YLEPCEVNVSSCKNLTHLRLDGLSITD  163 (430)
Q Consensus       137 ~~~~~~~~~~~l~~L~~L~L~~~~i~~  163 (430)
                       ..  +..++++++|+.|+|++|.++.
T Consensus       481 -~i--P~~l~~L~~L~~L~Ls~N~l~g  504 (623)
T PLN03150        481 -SI--PESLGQLTSLRILNLNGNSLSG  504 (623)
T ss_pred             -CC--chHHhcCCCCCEEECcCCcccc
Confidence             12  2456667777888887777653

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.81  E-value=0.00032  Score=65.45  Aligned_cols=121  Identities=19%  Similarity=0.239  Sum_probs=79.6

Q ss_pred             CCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC--CCccccCCCCCcCEEEc
Q 014120           36 KSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG--LKSLQLLGLNKLKEIKL  112 (430)
Q Consensus        36 ~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~--l~~l~l~~~~~L~~L~l  112 (430)
                      +.|+.++||++.+.. .....-.|.+|.|++++|.+..-  .+ +..+++|..|||+++..  +...+.. +.++++|.+
T Consensus       284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v--~n-La~L~~L~~LDLS~N~Ls~~~Gwh~K-LGNIKtL~L  359 (490)
T KOG1259|consen  284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTV--QN-LAELPQLQLLDLSGNLLAECVGWHLK-LGNIKTLKL  359 (490)
T ss_pred             hhhhhccccccchhhhhhhhhhccceeEEeccccceeee--hh-hhhcccceEeecccchhHhhhhhHhh-hcCEeeeeh
Confidence            668889999976554 24455678999999999987432  22 55678999999998642  2222222 467777777


Q ss_pred             CCCcCCceEeE-e-eccceeEEEeecCCCC---ceeccCCCCcCceEEccCCCCC
Q 014120          113 DSNRCGLERVY-I-NGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLRLDGLSIT  162 (430)
Q Consensus       113 ~~c~~~l~~l~-i-~~p~L~~L~l~~~~~~---~~~~~~~l~~L~~L~L~~~~i~  162 (430)
                      ..+.  ++++. + ..-+|+.|++.++.+.   .-..++++|+|+.+.|.+|.+.
T Consensus       360 a~N~--iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  360 AQNK--IETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             hhhh--HhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            7653  22221 0 1235677777774333   1235789999999999999874

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.75  E-value=0.0012  Score=43.82  Aligned_cols=34  Identities=24%  Similarity=0.241  Sum_probs=14.0

Q ss_pred             CccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecC
Q 014120           37 SIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV   70 (430)
Q Consensus        37 ~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~   70 (430)
                      +|++|+++++.+.. |..+.+|++|+.|++++|.+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCCC
Confidence            34444444444333 22244444444444444443

...

>PLN03150 hypothetical protein; Provisional

Probab=96.69  E-value=0.0017  Score=69.02  Aligned_cols=78  Identities=21%  Similarity=0.184  Sum_probs=53.4

Q ss_pred             ccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc--cccCCCCCcCEEEcC
Q 014120           38 IYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS--LQLLGLNKLKEIKLD  113 (430)
Q Consensus        38 L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--l~l~~~~~L~~L~l~  113 (430)
                      ++.|+|+++.+..  |..+..+++|+.|+|++|.+++. ++..+..+++|+.|+|++|..-..  ..+.++++|+.|+++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            6777887776543  45667788888888888877543 455577788888888887753221  234566788888887


Q ss_pred             CCc
Q 014120          114 SNR  116 (430)
Q Consensus       114 ~c~  116 (430)
                      +|.
T Consensus       499 ~N~  501 (623)
T PLN03150        499 GNS  501 (623)
T ss_pred             CCc
Confidence            764

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.65  E-value=0.00095  Score=62.31  Aligned_cols=63  Identities=14%  Similarity=0.164  Sum_probs=45.1

Q ss_pred             ccCCCCccEEEEcCccCCCCCC----CCCCCCCCEEEEeeecC-ChHHHHHHhcCCCCccEEEeeeCC
Q 014120           32 VFYLKSIYVLDFEFCKLEPPRS----TVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        32 l~~~~~L~~L~Ls~~~~~~~~~----~~~l~~L~~L~Ls~~~~-~~~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      +++..-+..|.+.+|.+.....    -...+.++.|+|.+|.+ .++.+..++.++|.|+.|+|+.+.
T Consensus        41 v~s~ra~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~  108 (418)
T KOG2982|consen   41 VSSLRALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNS  108 (418)
T ss_pred             eccccchhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCc
Confidence            3344444556666666554211    23578899999999998 678888889999999999998764

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=96.63  E-value=0.00041  Score=75.83  Aligned_cols=110  Identities=17%  Similarity=0.147  Sum_probs=75.4

Q ss_pred             CccccCCccccCCCCccEEEEcCcc--CC-CC-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc
Q 014120           23 CRIYNLPQIVFYLKSIYVLDFEFCK--LE-PP-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS   98 (430)
Q Consensus        23 ~~~~~LP~~l~~~~~L~~L~Ls~~~--~~-~~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~   98 (430)
                      +....++... .+++|++|-+.++.  +. .+ ..|..+|.|++|||++|.- ...++..++.+-+|++|++++. .++.
T Consensus       533 ~~~~~~~~~~-~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~-l~~LP~~I~~Li~LryL~L~~t-~I~~  609 (889)
T KOG4658|consen  533 NKIEHIAGSS-ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSS-LSKLPSSIGELVHLRYLDLSDT-GISH  609 (889)
T ss_pred             cchhhccCCC-CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCc-cCcCChHHhhhhhhhcccccCC-Cccc
Confidence            3456666443 45689999998874  22 22 4578899999999998743 2336777888889999999985 3443


Q ss_pred             c--ccCCCCCcCEEEcCCCcCCceEe---EeeccceeEEEeec
Q 014120           99 L--QLLGLNKLKEIKLDSNRCGLERV---YINGVNVHSVDIKV  136 (430)
Q Consensus        99 l--~l~~~~~L~~L~l~~c~~~l~~l---~i~~p~L~~L~l~~  136 (430)
                      +  .+..+.+|.+|++.... .+..+   ....++|++|.+..
T Consensus       610 LP~~l~~Lk~L~~Lnl~~~~-~l~~~~~i~~~L~~Lr~L~l~~  651 (889)
T KOG4658|consen  610 LPSGLGNLKKLIYLNLEVTG-RLESIPGILLELQSLRVLRLPR  651 (889)
T ss_pred             cchHHHHHHhhheecccccc-ccccccchhhhcccccEEEeec
Confidence            3  23456788888887665 33333   22368888888766

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.60  E-value=0.0019  Score=68.96  Aligned_cols=58  Identities=24%  Similarity=0.163  Sum_probs=32.6

Q ss_pred             ccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh-HHHHHHhcCCCccceeccccc
Q 014120          126 GVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD-KWLYNQISELPFLEYLALHYC  184 (430)
Q Consensus       126 ~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~l~~l~~~~p~Le~L~L~~c  184 (430)
                      .|+|..|+++|..+..-.++++++||+.|.+.+..+.. ..+..++ ++.+|+.||++.-
T Consensus       172 FpNL~sLDIS~TnI~nl~GIS~LknLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  172 FPNLRSLDISGTNISNLSGISRLKNLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRD  230 (699)
T ss_pred             cCccceeecCCCCccCcHHHhccccHHHHhccCCCCCchhhHHHHh-cccCCCeeecccc
Confidence            45555555555333222445666777777777666644 3344443 4677777777643

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.27  E-value=0.0035  Score=41.58  Aligned_cols=35  Identities=29%  Similarity=0.419  Sum_probs=27.7

Q ss_pred             CCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120           58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        58 ~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      ++|++|++++|.+++  ++..+++|++|+.|++++|.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCC
Confidence            579999999999875  45568899999999999974

...

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=96.17  E-value=0.00022  Score=71.83  Aligned_cols=89  Identities=21%  Similarity=0.229  Sum_probs=40.0

Q ss_pred             ccccCCccccCCCCccEEEEcCccCC-CCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--c
Q 014120           24 RIYNLPQIVFYLKSIYVLDFEFCKLE-PPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--Q  100 (430)
Q Consensus        24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~-~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~  100 (430)
                      +...+|..+..+..|..+.|..+.+. .|....++..|..|+|+.|+++-  ++.-+..|| |+.|-+++++. +.+  .
T Consensus        86 R~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~--lp~~lC~lp-Lkvli~sNNkl-~~lp~~  161 (722)
T KOG0532|consen   86 RFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSH--LPDGLCDLP-LKVLIVSNNKL-TSLPEE  161 (722)
T ss_pred             ccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhc--CChhhhcCc-ceeEEEecCcc-ccCCcc
Confidence            33444444333444444444442221 13344556666666666665421  122233344 55555555432 211  2


Q ss_pred             cCCCCCcCEEEcCCCc
Q 014120          101 LLGLNKLKEIKLDSNR  116 (430)
Q Consensus       101 l~~~~~L~~L~l~~c~  116 (430)
                      +...++|.+|+.+.|.
T Consensus       162 ig~~~tl~~ld~s~ne  177 (722)
T KOG0532|consen  162 IGLLPTLAHLDVSKNE  177 (722)
T ss_pred             cccchhHHHhhhhhhh
Confidence            2234566666666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.13  E-value=0.0016  Score=59.73  Aligned_cols=106  Identities=22%  Similarity=0.140  Sum_probs=71.5

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecC-ChHHHHHHhcCCCCccEEE
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHV-DDEVIRDMVAGCPLIEYIN   89 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~-~~~~l~~l~~~~p~Le~L~   89 (430)
                      ..++++.+|..-...-.++...-....|+.|.+.++.+..-..+-.+|+||+|.++.|.. ....+..++..||+|++|+
T Consensus        18 ~~v~~l~lD~~~s~~g~~~gl~d~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~   97 (260)
T KOG2739|consen   18 EQVDELFLDNARSGAGKLGGLTDEFVELELLSVINVGLTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLN   97 (260)
T ss_pred             hhhhhhhcchhhhcCCCcccccccccchhhhhhhccceeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEe
Confidence            345666666432223335544445678888888888777666788899999999999943 2233566677889999999


Q ss_pred             eeeCCC--CCcc-ccCCCCCcCEEEcCCCc
Q 014120           90 INNCPG--LKSL-QLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        90 L~~c~~--l~~l-~l~~~~~L~~L~l~~c~  116 (430)
                      ++++..  +..+ .+..+.+|..|++.+|.
T Consensus        98 ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   98 LSGNKIKDLSTLRPLKELENLKSLDLFNCS  127 (260)
T ss_pred             ecCCccccccccchhhhhcchhhhhcccCC
Confidence            999753  2222 22334667777777776

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.87  E-value=0.018  Score=51.12  Aligned_cols=90  Identities=21%  Similarity=0.147  Sum_probs=61.5

Q ss_pred             cccCCccccC----CCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC--CCc
Q 014120           25 IYNLPQIVFY----LKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG--LKS   98 (430)
Q Consensus        25 ~~~LP~~l~~----~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~--l~~   98 (430)
                      .+.+|.. ++    ..+...++|+.+.+.....+..+++|.+|.|.+|.++.-+ +.+-...|+|..|.|.+++.  +.+
T Consensus        28 ~lkip~i-enlg~~~d~~d~iDLtdNdl~~l~~lp~l~rL~tLll~nNrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~d  105 (233)
T KOG1644|consen   28 GLKIPVI-ENLGATLDQFDAIDLTDNDLRKLDNLPHLPRLHTLLLNNNRITRID-PDLDTFLPNLKTLILTNNSIQELGD  105 (233)
T ss_pred             cccccch-hhccccccccceecccccchhhcccCCCccccceEEecCCcceeec-cchhhhccccceEEecCcchhhhhh
Confidence            4666632 33    3456778888887665557888999999999999985432 33445678899999998753  222


Q ss_pred             c-ccCCCCCcCEEEcCCCc
Q 014120           99 L-QLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        99 l-~l~~~~~L~~L~l~~c~  116 (430)
                      + .+..||+|+.|.+-++.
T Consensus       106 l~pLa~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen  106 LDPLASCPKLEYLTLLGNP  124 (233)
T ss_pred             cchhccCCccceeeecCCc
Confidence            2 34567777777776654

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.86  E-value=0.0026  Score=58.41  Aligned_cols=35  Identities=23%  Similarity=0.232  Sum_probs=19.9

Q ss_pred             CCCCccEEEeeeCCCCCccccCCCCCcCEEEcCCC
Q 014120           81 GCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSN  115 (430)
Q Consensus        81 ~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c  115 (430)
                      ....|+.|++.++...+..++..+++|++|.++.+
T Consensus        41 ~~~~le~ls~~n~gltt~~~~P~Lp~LkkL~lsdn   75 (260)
T KOG2739|consen   41 EFVELELLSVINVGLTTLTNFPKLPKLKKLELSDN   75 (260)
T ss_pred             cccchhhhhhhccceeecccCCCcchhhhhcccCC
Confidence            33455555555554433334445577777777765

>smart00579 FBD domain in FBox and BRCT domain containing plant proteins

Probab=95.70  E-value=0.001  Score=49.34  Aligned_cols=38  Identities=11%  Similarity=0.208  Sum_probs=33.6

Q ss_pred             ccccccccceeeeeeeeccccccceeeeeecCchhhHHH
Q 014120          368 SCWKHCIKEVKIECTEKYPIRQINRESFSSEDGDIMEKI  406 (430)
Q Consensus       368 ~c~~~~Lk~v~i~~~~~~~~~~~~~~~~~~~~~~~l~~~  406 (430)
                      +|+.++||.|+|.++.+ ...++++++|+++|+++||++
T Consensus         1 ~cl~~~Lk~v~i~~f~g-~~~e~~~~~~il~~a~~Lk~~   38 (72)
T smart00579        1 ECLLSSLEVLEIKGYRG-TEEEKELVKYFLENAPCLKKL   38 (72)
T ss_pred             CcchheEEEEEEEeccC-cHHHHHHHHHHHhcchhheEE
Confidence            48899999999999855 555799999999999999987

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=95.52  E-value=0.0015  Score=65.94  Aligned_cols=82  Identities=27%  Similarity=0.257  Sum_probs=45.3

Q ss_pred             ccCCCCccEEEEcCccCCCCCC-CCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEE
Q 014120           32 VFYLKSIYVLDFEFCKLEPPRS-TVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEI  110 (430)
Q Consensus        32 l~~~~~L~~L~Ls~~~~~~~~~-~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L  110 (430)
                      +..+++|..|++.++.+..... ...+++|+.|+|++|.++.-   .-+..++.|+.|++++|..-..-.+..+..|+.+
T Consensus        91 l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i---~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l  167 (414)
T KOG0531|consen   91 LSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL---EGLSTLTLLKELNLSGNLISDISGLESLKSLKLL  167 (414)
T ss_pred             cccccceeeeeccccchhhcccchhhhhcchheeccccccccc---cchhhccchhhheeccCcchhccCCccchhhhcc
Confidence            4455667777777766555334 56677777777777766331   1133445577777766543222222234566666


Q ss_pred             EcCCCc
Q 014120          111 KLDSNR  116 (430)
Q Consensus       111 ~l~~c~  116 (430)
                      ++..+.
T Consensus       168 ~l~~n~  173 (414)
T KOG0531|consen  168 DLSYNR  173 (414)
T ss_pred             cCCcch
Confidence            665543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=94.73  E-value=0.0093  Score=60.46  Aligned_cols=157  Identities=17%  Similarity=0.234  Sum_probs=86.1

Q ss_pred             CccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-c
Q 014120           23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-Q  100 (430)
Q Consensus        23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~  100 (430)
                      +..-.+|..+.++..|+.|+|+.+.+.. |..+..|| |+.|-+++|.++..  +.-+...+.|..|+.+.|....-. .
T Consensus       108 n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~~l--p~~ig~~~tl~~ld~s~nei~slpsq  184 (722)
T KOG0532|consen  108 NCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLTSL--PEEIGLLPTLAHLDVSKNEIQSLPSQ  184 (722)
T ss_pred             ccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccccC--CcccccchhHHHhhhhhhhhhhchHH
Confidence            4456677777778888888888776544 33444444 77888887776321  223445566777777776432111 1


Q ss_pred             cCCCCCcCEEEcCCCcCCceEe--EeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhc-CCCcc
Q 014120          101 LLGLNKLKEIKLDSNRCGLERV--YINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQIS-ELPFL  176 (430)
Q Consensus       101 l~~~~~L~~L~l~~c~~~l~~l--~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~-~~p~L  176 (430)
                      +.++.+|+.|.+..+.  +..+  +...-.|..|+++.+.+. .++.|.+++.|++|.|.+|.+..-..+-... ...-.
T Consensus       185 l~~l~slr~l~vrRn~--l~~lp~El~~LpLi~lDfScNkis~iPv~fr~m~~Lq~l~LenNPLqSPPAqIC~kGkVHIF  262 (722)
T KOG0532|consen  185 LGYLTSLRDLNVRRNH--LEDLPEELCSLPLIRLDFSCNKISYLPVDFRKMRHLQVLQLENNPLQSPPAQICEKGKVHIF  262 (722)
T ss_pred             hhhHHHHHHHHHhhhh--hhhCCHHHhCCceeeeecccCceeecchhhhhhhhheeeeeccCCCCCChHHHHhccceeee
Confidence            2233444444444432  1111  011224555666552222 3578888889999999988875422222222 23334


Q ss_pred             ceeccccc
Q 014120          177 EYLALHYC  184 (430)
Q Consensus       177 e~L~L~~c  184 (430)
                      +.|++..|
T Consensus       263 KyL~~qA~  270 (722)
T KOG0532|consen  263 KYLSTQAC  270 (722)
T ss_pred             eeecchhc
Confidence            66666655

>PRK15386 type III secretion protein GogB; Provisional

Probab=94.73  E-value=0.1  Score=51.92  Aligned_cols=135  Identities=17%  Similarity=0.208  Sum_probs=85.1

Q ss_pred             CCCCCCCEEEEeeecCChHHHHHHhcCCC-CccEEEeeeCCCCCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEE
Q 014120           55 VTLFSLRKLCLSFVHVDDEVIRDMVAGCP-LIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVD  133 (430)
Q Consensus        55 ~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p-~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~  133 (430)
                      ..+.+++.|++++|.++.  ++    .+| +|++|.+++|..++.+.-.-.++|++|.++.|. .+..+   .++|+.|.
T Consensus        49 ~~~~~l~~L~Is~c~L~s--LP----~LP~sLtsL~Lsnc~nLtsLP~~LP~nLe~L~Ls~Cs-~L~sL---P~sLe~L~  118 (426)
T PRK15386         49 EEARASGRLYIKDCDIES--LP----VLPNELTEITIENCNNLTTLPGSIPEGLEKLTVCHCP-EISGL---PESVRSLE  118 (426)
T ss_pred             HHhcCCCEEEeCCCCCcc--cC----CCCCCCcEEEccCCCCcccCCchhhhhhhheEccCcc-ccccc---ccccceEE
Confidence            357889999999986533  22    233 699999999988776542223689999999886 45433   34677777


Q ss_pred             eecCCCCceeccCCC-CcCceEEccCCCC-ChHHHHHHhcCC-CccceeccccccccccccccccccceEecccc
Q 014120          134 IKVYLEPCEVNVSSC-KNLTHLRLDGLSI-TDKWLYNQISEL-PFLEYLALHYCMKLRSINISSPRLKELVFERC  205 (430)
Q Consensus       134 l~~~~~~~~~~~~~l-~~L~~L~L~~~~i-~~~~l~~l~~~~-p~Le~L~L~~c~~l~~l~~~~~~L~~L~l~~c  205 (430)
                      +.+...   ..+..+ ++|+.|.+.+++. ....++.   .+ ++|+.|++++|..+......+.+|+.|.++.+
T Consensus       119 L~~n~~---~~L~~LPssLk~L~I~~~n~~~~~~lp~---~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~n  187 (426)
T PRK15386        119 IKGSAT---DSIKNVPNGLTSLSINSYNPENQARIDN---LISPSLKTLSLTGCSNIILPEKLPESLQSITLHIE  187 (426)
T ss_pred             eCCCCC---cccccCcchHhheecccccccccccccc---ccCCcccEEEecCCCcccCcccccccCcEEEeccc
Confidence            765221   123334 4677887754331 1011111   12 57999999998866422234578999998765

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.53  E-value=0.0023  Score=59.26  Aligned_cols=54  Identities=28%  Similarity=0.293  Sum_probs=30.2

Q ss_pred             CCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-ccCCCCCcCEEEcCC
Q 014120           57 LFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKLDS  114 (430)
Q Consensus        57 l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~l~~~~~L~~L~l~~  114 (430)
                      +.+.++|+.++|.++|..   +...+|.||.|.|+-+.. +.+ .+..|.+|+.|.+..
T Consensus        18 l~~vkKLNcwg~~L~DIs---ic~kMp~lEVLsLSvNkI-ssL~pl~rCtrLkElYLRk   72 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDIS---ICEKMPLLEVLSLSVNKI-SSLAPLQRCTRLKELYLRK   72 (388)
T ss_pred             HHHhhhhcccCCCccHHH---HHHhcccceeEEeecccc-ccchhHHHHHHHHHHHHHh
Confidence            455667777777666543   445667777777765432 111 233455555555544

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=94.38  E-value=0.068  Score=47.51  Aligned_cols=75  Identities=20%  Similarity=0.317  Sum_probs=53.7

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCCh-HHHHHHhcCCCCccEEEeeeCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDD-EVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~-~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      +|++++....++ .+-.++.|..|.|+++.+..  |.-..-+|+|+.|.|.+|++.. +.+.. +..||.|++|.+-++.
T Consensus        47 iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~Np  124 (233)
T KOG1644|consen   47 IDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLGNP  124 (233)
T ss_pred             ecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecCCc
Confidence            566666555555 44467899999999976543  3333568999999999998732 22333 4579999999998865

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=94.10  E-value=0.015  Score=58.61  Aligned_cols=100  Identities=22%  Similarity=0.148  Sum_probs=50.8

Q ss_pred             CCCCccEEEeeeCCCCCccc-cCCCCCcCEEEcCCCcCCceEeE-e-eccceeEEEeecCCCCceeccCCCCcCceEEcc
Q 014120           81 GCPLIEYININNCPGLKSLQ-LLGLNKLKEIKLDSNRCGLERVY-I-NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLD  157 (430)
Q Consensus        81 ~~p~Le~L~L~~c~~l~~l~-l~~~~~L~~L~l~~c~~~l~~l~-i-~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~  157 (430)
                      .+.+|+.|++.++..-+... +..+++|++|+++.+.  +..+. + .++.|+.|++.++.+.....+..+++|+.++++
T Consensus        93 ~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~--I~~i~~l~~l~~L~~L~l~~N~i~~~~~~~~l~~L~~l~l~  170 (414)
T KOG0531|consen   93 KLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK--ITKLEGLSTLTLLKELNLSGNLISDISGLESLKSLKLLDLS  170 (414)
T ss_pred             cccceeeeeccccchhhcccchhhhhcchheeccccc--cccccchhhccchhhheeccCcchhccCCccchhhhcccCC
Confidence            34455555555443222222 3334555555555432  22111 1 123355556555333323345557788888888


Q ss_pred             CCCCChHHHHHH-hcCCCccceeccccc
Q 014120          158 GLSITDKWLYNQ-ISELPFLEYLALHYC  184 (430)
Q Consensus       158 ~~~i~~~~l~~l-~~~~p~Le~L~L~~c  184 (430)
                      +|.++  .++.. ...++.++.+.+.+.
T Consensus       171 ~n~i~--~ie~~~~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  171 YNRIV--DIENDELSELISLEELDLGGN  196 (414)
T ss_pred             cchhh--hhhhhhhhhccchHHHhccCC
Confidence            88873  33332 456777777777643

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=94.03  E-value=0.061  Score=49.96  Aligned_cols=57  Identities=21%  Similarity=0.154  Sum_probs=35.3

Q ss_pred             CcCceEEccCCCCChHHHHHH----hcCCCccceeccccccc--ccc--c---cccccccceEecccc
Q 014120          149 KNLTHLRLDGLSITDKWLYNQ----ISELPFLEYLALHYCMK--LRS--I---NISSPRLKELVFERC  205 (430)
Q Consensus       149 ~~L~~L~L~~~~i~~~~l~~l----~~~~p~Le~L~L~~c~~--l~~--l---~~~~~~L~~L~l~~c  205 (430)
                      .+|+.+.+..|.|....+..+    +..+.+|+.|++....-  ..+  +   -..-+.|+.|.+.+|
T Consensus       185 ~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         185 ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence            578888888888866544432    34577888888875431  111  1   112345788888888

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.96  E-value=0.0078  Score=55.88  Aligned_cols=77  Identities=19%  Similarity=0.187  Sum_probs=52.5

Q ss_pred             CcCEEEcCCCcCCceEeEe--eccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccc
Q 014120          106 KLKEIKLDSNRCGLERVYI--NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHY  183 (430)
Q Consensus       106 ~L~~L~l~~c~~~l~~l~i--~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~  183 (430)
                      +.++|+..+|  ++.++.+  .+|.|+.|.|+-+.+..-..+..|++|+.|+|..|.|.+-.--.-+.++|+|+.|-|..
T Consensus        20 ~vkKLNcwg~--~L~DIsic~kMp~lEVLsLSvNkIssL~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~E   97 (388)
T KOG2123|consen   20 NVKKLNCWGC--GLDDISICEKMPLLEVLSLSVNKISSLAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDE   97 (388)
T ss_pred             HhhhhcccCC--CccHHHHHHhcccceeEEeeccccccchhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhcc
Confidence            3444445444  4555543  36778888777644443456788999999999999995522233567999999999974


Q ss_pred             c
Q 014120          184 C  184 (430)
Q Consensus       184 c  184 (430)
                      +
T Consensus        98 N   98 (388)
T KOG2123|consen   98 N   98 (388)
T ss_pred             C
Confidence            3

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=93.41  E-value=0.074  Score=49.41  Aligned_cols=39  Identities=26%  Similarity=0.360  Sum_probs=20.8

Q ss_pred             CCCCcCceEEccCCCCCh---HHHHHHhcCCCccceeccccc
Q 014120          146 SSCKNLTHLRLDGLSITD---KWLYNQISELPFLEYLALHYC  184 (430)
Q Consensus       146 ~~l~~L~~L~L~~~~i~~---~~l~~l~~~~p~Le~L~L~~c  184 (430)
                      ..+.+|+.|+|..|.++-   ..+......++.|+.|.+..|
T Consensus       211 ~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         211 FYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             HHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence            345566666666665543   222334455556666666555

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=93.33  E-value=0.07  Score=43.88  Aligned_cols=84  Identities=14%  Similarity=0.159  Sum_probs=40.8

Q ss_pred             CCcccc-CCCCccEEEEcC-ccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC-CCCCccccCCC
Q 014120           28 LPQIVF-YLKSIYVLDFEF-CKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGL  104 (430)
Q Consensus        28 LP~~l~-~~~~L~~L~Ls~-~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~~~  104 (430)
                      +|...| +|++|+.+.+.. +.......|.++++|+.+.+..+ +..-. ...+.+|+.|+.+.+... ..+..-.+..+
T Consensus         3 i~~~~F~~~~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~-~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~   80 (129)
T PF13306_consen    3 IGNNAFYNCSNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIG-DNAFSNCKSLESITFPNNLKSIGDNAFSNC   80 (129)
T ss_dssp             E-TTTTTT-TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE--TTTTTT-TT-EEEEETSTT-EE-TTTTTT-
T ss_pred             ECHHHHhCCCCCCEEEECCCeeEeChhhccccccccccccccc-ccccc-eeeeeccccccccccccccccccccccccc
Confidence            444444 467888888875 22223356788888888888764 31110 234667777888888541 12233334445


Q ss_pred             CCcCEEEcC
Q 014120          105 NKLKEIKLD  113 (430)
Q Consensus       105 ~~L~~L~l~  113 (430)
                      ++|+.+.+.
T Consensus        81 ~~l~~i~~~   89 (129)
T PF13306_consen   81 TNLKNIDIP   89 (129)
T ss_dssp             TTECEEEET
T ss_pred             ccccccccC
Confidence            666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=92.89  E-value=0.0043  Score=64.53  Aligned_cols=103  Identities=21%  Similarity=0.227  Sum_probs=63.9

Q ss_pred             CCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC--CCCccccCCCCCcCEEEcCCCcCCceEe-Ee-eccce
Q 014120           54 TVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP--GLKSLQLLGLNKLKEIKLDSNRCGLERV-YI-NGVNV  129 (430)
Q Consensus        54 ~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~--~l~~l~l~~~~~L~~L~l~~c~~~l~~l-~i-~~p~L  129 (430)
                      +.-++.|+.|+|++|++++-.   .+..||.|.+|||++|.  .+..+...+|. |..|.+.++.  +..+ .+ ...+|
T Consensus       183 Lqll~ale~LnLshNk~~~v~---~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lrnN~--l~tL~gie~LksL  256 (1096)
T KOG1859|consen  183 LQLLPALESLNLSHNKFTKVD---NLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLRNNA--LTTLRGIENLKSL  256 (1096)
T ss_pred             HHHHHHhhhhccchhhhhhhH---HHHhcccccccccccchhccccccchhhhh-heeeeecccH--HHhhhhHHhhhhh
Confidence            345788999999999886542   45678899999998874  24455555665 8888887764  2211 11 13455


Q ss_pred             eEEEeecCCCC--ce-eccCCCCcCceEEccCCCCC
Q 014120          130 HSVDIKVYLEP--CE-VNVSSCKNLTHLRLDGLSIT  162 (430)
Q Consensus       130 ~~L~l~~~~~~--~~-~~~~~l~~L~~L~L~~~~i~  162 (430)
                      +.|+++.+.+.  .. .-+..+..|+.|.|.||.+.
T Consensus       257 ~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  257 YGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            66666552221  01 11244567788888888763

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=92.56  E-value=0.16  Score=29.41  Aligned_cols=25  Identities=36%  Similarity=0.777  Sum_probs=21.3

Q ss_pred             CCCEEEEeeecC-ChHHHHHHhcCCC
Q 014120           59 SLRKLCLSFVHV-DDEVIRDMVAGCP   83 (430)
Q Consensus        59 ~L~~L~Ls~~~~-~~~~l~~l~~~~p   83 (430)
                      +||+|+|..+.+ .+..++.++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            589999999988 4457899999997

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.49  E-value=0.04  Score=48.90  Aligned_cols=90  Identities=19%  Similarity=0.243  Sum_probs=63.4

Q ss_pred             ccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeec-CChHHHHHHhcCCCCccEEEeeeCCCCCccc
Q 014120           24 RIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSLQ  100 (430)
Q Consensus        24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~  100 (430)
                      ..+.+|.....--.++.++-+++.+-.  -..+.++++++.|.+.+|. +.+..+..+-.-.|+|+.|+|++|+.+++-.
T Consensus        89 g~~~lp~~~~~~~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~G  168 (221)
T KOG3864|consen   89 GYFSLPGPNADNVKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGG  168 (221)
T ss_pred             ceecCCCCCCCcceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhH
Confidence            345777554444457888888764332  2467788899999999985 4777788877778999999999999887755


Q ss_pred             cC---CCCCcCEEEcC
Q 014120          101 LL---GLNKLKEIKLD  113 (430)
Q Consensus       101 l~---~~~~L~~L~l~  113 (430)
                      +.   .+++|+.|.+.
T Consensus       169 L~~L~~lknLr~L~l~  184 (221)
T KOG3864|consen  169 LACLLKLKNLRRLHLY  184 (221)
T ss_pred             HHHHHHhhhhHHHHhc
Confidence            43   23556655554

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=90.05  E-value=0.048  Score=45.55  Aligned_cols=75  Identities=16%  Similarity=0.295  Sum_probs=50.7

Q ss_pred             EecCCccccCCccccC---CCCccEEEEcCccCCC-C-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120           19 DVGCCRIYNLPQIVFY---LKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (430)
Q Consensus        19 ~~~~~~~~~LP~~l~~---~~~L~~L~Ls~~~~~~-~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c   93 (430)
                      +++.+....+|+.+..   ...|+..+|+++.+.. | .....+|-++.|+|++|.+++-  +.-+..+|.|+.|+++.+
T Consensus        33 dLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdv--PeE~Aam~aLr~lNl~~N  110 (177)
T KOG4579|consen   33 DLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDV--PEELAAMPALRSLNLRFN  110 (177)
T ss_pred             ccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhc--hHHHhhhHHhhhcccccC
Confidence            4444444445555444   4556777888887653 4 3345678899999999988654  334778889999999987


Q ss_pred             CC
Q 014120           94 PG   95 (430)
Q Consensus        94 ~~   95 (430)
                      +.
T Consensus       111 ~l  112 (177)
T KOG4579|consen  111 PL  112 (177)
T ss_pred             cc
Confidence            65

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.33  E-value=0.29  Score=27.50  Aligned_cols=22  Identities=27%  Similarity=0.170  Sum_probs=14.8

Q ss_pred             CCCCCEEEEeeecCChHHHHHH
Q 014120           57 LFSLRKLCLSFVHVDDEVIRDM   78 (430)
Q Consensus        57 l~~L~~L~Ls~~~~~~~~l~~l   78 (430)
                      +++|++|+|++|.++++++..+
T Consensus         1 ~~~L~~L~l~~n~i~~~g~~~l   22 (24)
T PF13516_consen    1 NPNLETLDLSNNQITDEGASAL   22 (24)
T ss_dssp             -TT-SEEE-TSSBEHHHHHHHH
T ss_pred             CCCCCEEEccCCcCCHHHHHHh
Confidence            4788999999998877766554

...

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=86.65  E-value=0.48  Score=38.77  Aligned_cols=60  Identities=12%  Similarity=0.186  Sum_probs=26.3

Q ss_pred             CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC-CCCCccccCCCCCcCEEEcC
Q 014120           52 RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNKLKEIKLD  113 (430)
Q Consensus        52 ~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~~~~~L~~L~l~  113 (430)
                      ..|.++++|+.+.+... +..- -...+.+|+.|+.+.+... ..+..-.+.++++++.+.+.
T Consensus         6 ~~F~~~~~l~~i~~~~~-~~~I-~~~~F~~~~~l~~i~~~~~~~~i~~~~F~~~~~l~~i~~~   66 (129)
T PF13306_consen    6 NAFYNCSNLESITFPNT-IKKI-GENAFSNCTSLKSINFPNNLTSIGDNAFSNCKSLESITFP   66 (129)
T ss_dssp             TTTTT-TT--EEEETST---EE--TTTTTT-TT-SEEEESSTTSCE-TTTTTT-TT-EEEEET
T ss_pred             HHHhCCCCCCEEEECCC-eeEe-Chhhcccccccccccccccccccceeeeeccccccccccc
Confidence            45667778888877642 2110 0223567777777777642 12223334445556655554

>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=85.65  E-value=0.54  Score=27.17  Aligned_cols=25  Identities=32%  Similarity=0.462  Sum_probs=20.6

Q ss_pred             cCceEEccCCCCChH-HHHHHhcCCC
Q 014120          150 NLTHLRLDGLSITDK-WLYNQISELP  174 (430)
Q Consensus       150 ~L~~L~L~~~~i~~~-~l~~l~~~~p  174 (430)
                      +||+|+|..+.+.++ .+..++++||
T Consensus         1 sLKtL~L~~v~f~~~~~l~~LlS~CP   26 (26)
T PF07723_consen    1 SLKTLHLDSVVFSDEDSLERLLSGCP   26 (26)
T ss_pred             CCeEEEeeEEEECChhHHHHhhccCc
Confidence            488999999888664 6888999887

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.73  E-value=0.36  Score=42.99  Aligned_cols=43  Identities=21%  Similarity=0.223  Sum_probs=21.6

Q ss_pred             CCCCcCceEEccCCCC-ChHHHHHHhcCCCccceeccccccccc
Q 014120          146 SSCKNLTHLRLDGLSI-TDKWLYNQISELPFLEYLALHYCMKLR  188 (430)
Q Consensus       146 ~~l~~L~~L~L~~~~i-~~~~l~~l~~~~p~Le~L~L~~c~~l~  188 (430)
                      .+++.++.|.+.+|.- .|..+..+-.-.|+|+.|+|++|+.+.
T Consensus       122 ~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT  165 (221)
T KOG3864|consen  122 RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRIT  165 (221)
T ss_pred             hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeec
Confidence            3444555555555533 223344444445566666666665553

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=83.16  E-value=1.1  Score=25.60  Aligned_cols=22  Identities=32%  Similarity=0.333  Sum_probs=13.6

Q ss_pred             CCCCCEEEEeeec-CChHHHHHH
Q 014120           57 LFSLRKLCLSFVH-VDDEVIRDM   78 (430)
Q Consensus        57 l~~L~~L~Ls~~~-~~~~~l~~l   78 (430)
                      +++|+.|+|++|. +++.++..+
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l   23 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQAL   23 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHH
Confidence            3566777777764 566665554

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=82.72  E-value=0.74  Score=23.60  Aligned_cols=12  Identities=42%  Similarity=0.384  Sum_probs=5.0

Q ss_pred             CCCEEEEeeecC
Q 014120           59 SLRKLCLSFVHV   70 (430)
Q Consensus        59 ~L~~L~Ls~~~~   70 (430)
                      +|+.|+|++|.+
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            455555555543

...

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=80.45  E-value=0.24  Score=41.51  Aligned_cols=59  Identities=15%  Similarity=0.228  Sum_probs=30.9

Q ss_pred             CceEEEEEecCCccccCCccccC-CCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecC
Q 014120           12 NVKELKLDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHV   70 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~~LP~~l~~-~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~   70 (430)
                      +.+...++++++..-.+|+.+.. .+.++.|+|+++.+.. |..+..+|.||.|+++.|.+
T Consensus        52 ~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l  112 (177)
T KOG4579|consen   52 GYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPL  112 (177)
T ss_pred             CceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCcc
Confidence            33333455555555555555433 3355666666655433 44455566666666666655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	430
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-10
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	9e-08
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	6e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	8e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	4e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	5e-06
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-04

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 62.7 bits (152), Expect = 1e-10
 Identities = 41/238 (17%), Positives = 75/238 (31%), Gaps = 22/238 (9%)

Query: 3   RCLSYAFASNVKELKLDVGCCRI--YNLPQIVFYLKSIYVLDFEFCKLEP---------P 51
             L+ A A +++ LKLD  C       L  IV + + I  L  E                
Sbjct: 130 DRLAKARADDLETLKLD-KCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188

Query: 52  RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLL-GLNKLKEI 110
           +   +L  L      F  +  + +  +   C  +  + + +   L+ +        L+E 
Sbjct: 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEF 248

Query: 111 KLDS--NRCGLERVYINGVNVHSVDI----KVYLEPCEVNVSSCKNLTHLRLDGLSITDK 164
              S     G+   Y+N V    +       +      +       +  L L    +  +
Sbjct: 249 CGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETE 308

Query: 165 WLYNQISELPFLEYLALHYCMK---LRSINISSPRLKELVFERCEELVEFELDTPNLS 219
                I + P LE L     +    L  +     +LK L  ER  +    E +   +S
Sbjct: 309 DHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVS 366

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.2 bits (117), Expect = 2e-06
 Identities = 23/179 (12%), Positives = 54/179 (30%), Gaps = 33/179 (18%)

Query: 59  SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLN-----------KL 107
            L  + +    + +E +  +      +    +      + +  L L+           KL
Sbjct: 379 ELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKL 438

Query: 108 KEIKLDSNRC-----GLERVYINGVNVHSVDIKVYLEPCEVN-------VSSCKNLTHLR 155
           +       +      GL  +     NV  + +         +          C NL  L 
Sbjct: 439 RRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGY----VGESDEGLMEFSRGCPNLQKLE 494

Query: 156 LDGLSITDKWLYNQISELPFLEYLALHYC------MKLRSINISSPRLKELVFERCEEL 208
           + G   +++ +   +++LP L YL +           L  +      ++ +   R  E+
Sbjct: 495 MRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEV 553

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 17/174 (9%), Positives = 60/174 (34%), Gaps = 20/174 (11%)

Query: 59  SLRKLCLSFVHVDDEVIRDMVAG-CPLIEYININNCPGL--KSLQLL--GLNKLKEIKLD 113
            L+ +    + V D  +  +       +E + ++ C G     L  +     K+K + ++
Sbjct: 113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLME 172

Query: 114 SNRC------GLERVYINGVNVHSVDIKVYLEPCEVN-------VSSCKNLTHLRLDGLS 160
            +         L  +  +  ++  ++     E  +++         +C++L  +++    
Sbjct: 173 ESSFSEKDGKWLHELAQHNTSLEVLNFY-MTEFAKISPKDLETIARNCRSLVSVKVGDFE 231

Query: 161 -ITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFEL 213
            +     +   + L      +L+  + +    ++    ++L       +   E+
Sbjct: 232 ILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEM 285

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 62.2 bits (150), Expect = 2e-10
 Identities = 80/521 (15%), Positives = 142/521 (27%), Gaps = 135/521 (25%)

Query: 12  NVKELKLDVGCCRIYNLPQIVFY---LKSIYV-------LDFEF-CKLEPPRSTVTLF-- 58
                  +  C  + ++P+ +     +  I +           F   L      V  F  
Sbjct: 25  FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 59  ------------SLRKLCL-------SFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL 99
                        ++            ++   D +  D        +Y N++       L
Sbjct: 85  EVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ---VFAKY-NVSRLQPYLKL 140

Query: 100 QLLGLNKLKEIKLDSNRCGLERVYING-------VNVHSV--DIKVYLE-PCEV---NVS 146
           +      L E++   N      V I+G            V    KV  +   ++   N+ 
Sbjct: 141 R----QALLELRPAKN------VLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK 190

Query: 147 SCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERCE 206
           +C N     L+ L      L  QI   P     + H       I+     L+ L+  +  
Sbjct: 191 NC-NSPETVLEMLQK----LLYQID--PNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 207 E---LVEFELD-TPNLSIFKCFNY------VESFSSNALALSQTLLCFISHPVDNEWYLK 256
           E   LV   L    N   +  FN          F      LS       +H   +   + 
Sbjct: 244 ENCLLV---LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT---TTHISLDHHSMT 297

Query: 257 FIKLLARFNLCSNVLNLQCN---HEAV--------LIPRELREILCPPLTYHKHVSFSVL 305
                 + +L    L+ +      E +        +I   +R+ L       KHV+   L
Sbjct: 298 LTPDEVK-SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHVNCDKL 355

Query: 306 SEILEVSLANL---------VDCLL-----WITPHAETLSIEWPNINFY--ELSFQFSYK 349
           + I+E SL  L             +      I      LS+ W ++      +     +K
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPT--ILLSLIWFDVIKSDVMVVVNKLHK 413

Query: 350 KKLTYEGETPSCCQ--SLPLSCWKHCIKEVKI--ECTEKYPIRQ---INRESFSSEDG-- 400
             L  +    S     S+ L        E  +     + Y I +    +       D   
Sbjct: 414 YSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYF 473

Query: 401 -----------DIMEKINDLWKSLLDMMILHSKIFAEYDGP 430
                      +  E++       LD   L  KI   +D  
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKI--RHDST 512

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.6 bits (126), Expect = 9e-08
 Identities = 28/188 (14%), Positives = 63/188 (33%), Gaps = 29/188 (15%)

Query: 44  EFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC---------- 93
                +P     + F ++ + LS   ++   +  +++ C  ++ +++             
Sbjct: 79  RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTL 138

Query: 94  ---PGLKSLQLLGLNKLKEIKLD--SNRC-GLERVYING-VNVHSVDIKVYLEPCEVNVS 146
                L  L L G +   E  L    + C  L+ + ++   +     ++V +        
Sbjct: 139 AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV----- 193

Query: 147 SCKNLTHLRLDGLS--ITDKWLYNQISELPFLEYLALHYCMKL--RSINI--SSPRLKEL 200
             + +T L L G    +    L   +   P L +L L   + L             L+ L
Sbjct: 194 -SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 252

Query: 201 VFERCEEL 208
              RC ++
Sbjct: 253 SLSRCYDI 260

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 50.7 bits (121), Expect = 6e-07
 Identities = 30/198 (15%), Positives = 69/198 (34%), Gaps = 25/198 (12%)

Query: 59  SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL--KSLQLL--GLNKLKEIKLDS 114
            L ++ L  + V D+ +  +       + + +++C G     L  +      LKE+ L  
Sbjct: 106 WLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDL-- 163

Query: 115 NRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLS--ITDKWLYNQISE 172
               ++ V  + ++                  +  +L  L +  L+  ++   L   ++ 
Sbjct: 164 RESDVDDVSGHWLSHFP--------------DTYTSLVSLNISCLASEVSFSALERLVTR 209

Query: 173 LPFLEYLALHYCMK---LRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVES 229
            P L+ L L+  +    L ++   +P+L+EL        V  ++ +           +  
Sbjct: 210 CPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRC 269

Query: 230 FSSNALALSQTLLCFISH 247
            S    A+   L    S 
Sbjct: 270 LSGFWDAVPAYLPAVYSV 287

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 43.7 bits (103), Expect = 8e-05
 Identities = 23/180 (12%), Positives = 54/180 (30%), Gaps = 36/180 (20%)

Query: 59  SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLN--KLKEIKLDSNR 116
            L  L LS+  V    +  ++  CP ++ + + +      L++L      L+E+++  + 
Sbjct: 290 RLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE 349

Query: 117 CGLERVYINGVNVHSVDIKVYLEPCE---------VNVS---------SCKNLTHLRLDG 158
             +       V +    +      C            ++         +  N+T  RL  
Sbjct: 350 PFVME---PNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCI 406

Query: 159 LS----------ITDKWLYNQISELPFLEYLALHYCM---KLRSINISSPRLKELVFERC 205
           +             D      +     L  L+L   +       I   + +++ L     
Sbjct: 407 IEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSVAFA 466

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.8 bits (98), Expect = 4e-04
 Identities = 24/180 (13%), Positives = 54/180 (30%), Gaps = 32/180 (17%)

Query: 8   AFASNVKELK-LDVGCCRIYN--LPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLC 64
           + +    +L+ +   C ++ N  L  I     ++        + + P             
Sbjct: 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPL----- 420

Query: 65  LSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYI 124
                  D     +V  C  +  ++++     K  + +G          +    +E + +
Sbjct: 421 -------DIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIG----------TYAKKMEMLSV 463

Query: 125 NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYC 184
                  + +   L       S C +L  L +      DK L    S+L  +  L +  C
Sbjct: 464 AFAGDSDLGMHHVL-------SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSC 516

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 45/273 (16%), Positives = 86/273 (31%), Gaps = 54/273 (19%)

Query: 57  LFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC--------PGLKSLQLLGL--NK 106
                K  L    V D V          I+ I  NN           L ++  L L  NK
Sbjct: 20  FAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK 76

Query: 107 LKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--- 163
           L +IK  +N   L  ++++   +  +           ++   K L  L L+   I+D   
Sbjct: 77  LTDIKPLTNLKNLGWLFLDENKIKDLS----------SLKDLKKLKSLSLEHNGISDING 126

Query: 164 -------KWLY---NQISELPFLEYLALHYCMKLRSINISSPRLKELV-FERCEELVEFE 212
                  + LY   N+I+++  L  L      KL ++++   ++ ++V      +L    
Sbjct: 127 LVHLPQLESLYLGNNKITDITVLSRLT-----KLDTLSLEDNQISDIVPLAGLTKLQNLY 181

Query: 213 LDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNE--WYLKFIKLLARFNLCSNV 270
           L           N++    + A   +  +L   S    N+   +   + +          
Sbjct: 182 LS---------KNHISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGS 232

Query: 271 LNLQCNHEAVLIPRELREILCPPLTYHKHVSFS 303
           L             +   +      +   VSF 
Sbjct: 233 LVTPEIISDDGDYEKP-NVKWHLPEFTNEVSFI 264

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 44.9 bits (107), Expect = 3e-05
 Identities = 37/200 (18%), Positives = 67/200 (33%), Gaps = 45/200 (22%)

Query: 17  KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVI 75
            + +    +  LP  +     +  L      L   P S  +L  LR+L +          
Sbjct: 108 HMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIR--------- 158

Query: 76  RDMVAGCPLIEYI--NINNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVD 133
                 CP +  +   + +       Q  GL  L+ ++L+     +  +           
Sbjct: 159 -----ACPELTELPEPLASTDASGEHQ--GLVNLQSLRLEWTG--IRSL----------- 198

Query: 134 IKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI--N 191
                 P    +++ +NL  L++    ++   L   I  LP LE L L  C  LR+    
Sbjct: 199 ------PAS--IANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPI 248

Query: 192 ISS-PRLKELVFERCEELVE 210
                 LK L+ + C  L+ 
Sbjct: 249 FGGRAPLKRLILKDCSNLLT 268

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 44.6 bits (106), Expect = 5e-05
 Identities = 35/200 (17%), Positives = 62/200 (31%), Gaps = 33/200 (16%)

Query: 11  SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLE--PPRSTVTLFSLRKLCLSFV 68
           S ++EL L      +  LP  +  L ++  L     K E     S     SL  L +   
Sbjct: 278 SGLQELDLTA--THLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGN 335

Query: 69  HVDDEVIRDMVAGCPLIEYININNCP----GLKSLQLLGLNKLKEIKLDSNRCGLERVYI 124
               E+    +     +  +++++         +LQL  L+ L+ + L  N         
Sbjct: 336 TKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-------P 388

Query: 125 NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYC 184
             +   +                C  L  L L    +  K   +    L  L+ L L + 
Sbjct: 389 LSLKTEAF-------------KECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHS 435

Query: 185 MKLRSINISS----PRLKEL 200
             L   +       P L+ L
Sbjct: 436 -LLDISSEQLFDGLPALQHL 454

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 33/230 (14%), Positives = 79/230 (34%), Gaps = 47/230 (20%)

Query: 11  SNVKELK-LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVH 69
           +++ ++  L      I ++  +  YL ++  ++F   +L        L  L  + ++   
Sbjct: 43  TDLDQVTTLQADRLGIKSIDGV-EYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNN-- 99

Query: 70  VDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNV 129
                         + +   + N   L  L L   N++ +I    N   L R+ ++   +
Sbjct: 100 ------------NQIADITPLANLTNLTGLTL-FNNQITDIDPLKNLTNLNRLELSSNTI 146

Query: 130 HSVDIKVYLEPCEV-----------NVSSCKNLTHLRLDGLSITD----------KWLY- 167
             +     L   +             +++   L  L +    ++D          + L  
Sbjct: 147 SDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIA 206

Query: 168 --NQISELPFLEYLALHYCMKLRSINISSPRLKEL-VFERCEELVEFELD 214
             NQIS++  L  L       L  ++++  +LK++        L + +L 
Sbjct: 207 TNNQISDITPLGILT-----NLDELSLNGNQLKDIGTLASLTNLTDLDLA 251

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 36/182 (19%), Positives = 64/182 (35%), Gaps = 42/182 (23%)

Query: 57  LFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP--------GLKSLQLLGL--NK 106
                K  L    V D V          I+ I  NN           L ++  L L  NK
Sbjct: 23  FAETIKDNLKKKSVTDAVT---QNELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNK 79

Query: 107 LKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--- 163
           L +IK  +N   L  ++++   V  +           ++   K L  L L+   I+D   
Sbjct: 80  LTDIKPLANLKNLGWLFLDENKVKDLS----------SLKDLKKLKSLSLEHNGISDING 129

Query: 164 -------KWLY---NQISELPFLEYLALHYCMKLRSINISSPRLKEL-VFERCEELVEFE 212
                  + LY   N+I+++  L  L      KL ++++   ++ ++       +L    
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLT-----KLDTLSLEDNQISDIVPLAGLTKLQNLY 184

Query: 213 LD 214
           L 
Sbjct: 185 LS 186

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 35/246 (14%), Positives = 71/246 (28%), Gaps = 42/246 (17%)

Query: 18  LDVGCCRIYNLPQIVFY-LKSIYVLDFEFCKLE--PPRSTVTLFSLRKLCLSFVHVDDEV 74
           L +   RI  +    FY L S+  LD     L          L SL+ L L         
Sbjct: 55  LILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLG 114

Query: 75  IRDMVAGCPLIEYININNCPGLKSLQ---LLGLNKLKEIKLDSNRCGLERVYINGVNVHS 131
           +  +      ++ + I N      ++     GL  L E+++ +         +      S
Sbjct: 115 VTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-------LRNYQSQS 167

Query: 132 VDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD---------------KWLYNQISELPFL 176
           +              S +++ HL L                      +     ++   F 
Sbjct: 168 LK-------------SIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFS 214

Query: 177 EYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKC-FNYVESFSSNAL 235
                     ++ +      L +  F    +L+ + L+   +    C  N +  F+ +  
Sbjct: 215 PLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSES 274

Query: 236 ALSQTL 241
            +   L
Sbjct: 275 DVVSEL 280

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	430
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.66
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.58
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.58
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.57
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.56
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.55
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.55
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.54
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.54
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.53
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.51
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.51
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.51
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.5
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.49
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.48
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.48
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.47
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.47
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.46
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.46
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.45
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.45
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.45
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.44
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.44
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.43
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.43
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.42
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.42
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.42
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.41
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.4
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.4
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.4
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.4
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.4
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.4
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.39
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.39
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.39
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.38
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.38
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.38
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.36
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.35
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.35
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.34
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.34
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.34
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.34
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.34
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.32
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.32
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.3
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.3
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.3
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.29
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.28
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.28
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.23
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.23
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.22
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.22
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.21
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.21
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.2
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.2
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.2
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.2
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.2
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.19
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.19
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.18
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.18
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.16
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.15
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.15
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.15
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.13
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.09
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.09
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.04
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.03
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.02
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.01
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.98
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.98
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.95
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.94
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.94
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.93
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.93
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.92
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.89
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.89
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.85
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.81
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	98.8
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.77
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.76
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	98.74
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	98.74
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.71
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.69
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.67
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.65
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.63
3e6j_A	229	Variable lymphocyte receptor diversity region; var	98.62
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.57
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.55
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.48
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.45
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	98.41
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	98.36
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.34
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.32
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.3
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.29
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	98.28
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	98.26
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.25
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	98.19
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.16
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.13
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	98.12
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.97
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.94
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	97.84
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.74
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	97.74
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.61
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.29
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.09
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.06
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.42
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.2
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.72
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	95.69
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	95.61
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	93.16
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	92.02
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	91.96
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	91.52
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	89.39
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	87.94

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.66  E-value=3.5e-16  Score=151.39  Aligned_cols=196  Identities=19%  Similarity=0.260  Sum_probs=139.1

Q ss_pred             HhCCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120            9 FASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus         9 ~~~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      ...+++.|+|..  +....+|+.++.+++|++|+|+++.+.. |..+.++++|++|+|++|.++  .++..+.++++|++
T Consensus        79 ~~~~l~~L~L~~--n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~--~lp~~l~~l~~L~~  154 (328)
T 4fcg_A           79 TQPGRVALELRS--VPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR--ALPASIASLNRLRE  154 (328)
T ss_dssp             TSTTCCEEEEES--SCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC--CCCGGGGGCTTCCE
T ss_pred             cccceeEEEccC--CCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc--cCcHHHhcCcCCCE
Confidence            346787777655  4567999999999999999999987654 667899999999999999886  34556889999999


Q ss_pred             EEeeeCCCCCcccc-----------CCCCCcCEEEcCCCcCCceEeE---eeccceeEEEeecCCCC-ceeccCCCCcCc
Q 014120           88 ININNCPGLKSLQL-----------LGLNKLKEIKLDSNRCGLERVY---INGVNVHSVDIKVYLEP-CEVNVSSCKNLT  152 (430)
Q Consensus        88 L~L~~c~~l~~l~l-----------~~~~~L~~L~l~~c~~~l~~l~---i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~  152 (430)
                      |++++|..+..+..           .++++|++|++++|.  +..+.   -.+++|++|++++.... .+..+..+++|+
T Consensus       155 L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~  232 (328)
T 4fcg_A          155 LSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG--IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE  232 (328)
T ss_dssp             EEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC--CCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred             EECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC--cCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence            99999876554432           236888888888764  22221   13567777777773222 223566777788


Q ss_pred             eEEccCCCCChHHHHHHhcCCCccceecccccccccccccc---ccccceEecccccccccc
Q 014120          153 HLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEF  211 (430)
Q Consensus       153 ~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~  211 (430)
                      .|++++|.+.+ .++..+.++++|+.|++++|+....++..   .++|+.|++++|..++.+
T Consensus       233 ~L~Ls~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~i  293 (328)
T 4fcg_A          233 ELDLRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL  293 (328)
T ss_dssp             EEECTTCTTCC-BCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCC
T ss_pred             EEECcCCcchh-hhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhc
Confidence            88887776643 33445566777888888777766665542   467777777777544443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.62  E-value=8.1e-16  Score=149.42  Aligned_cols=205  Identities=14%  Similarity=0.161  Sum_probs=129.7

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L   90 (430)
                      ..++.+++.  ++....+| .+..+++|++|++++|.+.....+.++++|++|+|++|.+++-  + .+.++++|++|++
T Consensus        44 ~~L~~L~l~--~~~i~~~~-~~~~~~~L~~L~l~~n~i~~~~~~~~l~~L~~L~L~~n~i~~~--~-~~~~l~~L~~L~l  117 (347)
T 4fmz_A           44 ESITKLVVA--GEKVASIQ-GIEYLTNLEYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDI--S-ALQNLTNLRELYL  117 (347)
T ss_dssp             TTCSEEECC--SSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEEC
T ss_pred             ccccEEEEe--CCccccch-hhhhcCCccEEEccCCccccchhhhcCCcCCEEEccCCcccCc--h-HHcCCCcCCEEEC
Confidence            455555543  34456666 3667888888888888765532377888888888888877542  2 3678888888888


Q ss_pred             eeCCCCCccccCCCCCcCEEEcCCCcCCceEe--EeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHH
Q 014120           91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERV--YINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN  168 (430)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l--~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~  168 (430)
                      ++|..-....+.++++|++|++++|. ....+  ...+++|++|++++........+..+++|+.|++++|.+.+  ++.
T Consensus       118 ~~n~i~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~  194 (347)
T 4fmz_A          118 NEDNISDISPLANLTKMYSLNLGANH-NLSDLSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIED--ISP  194 (347)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECTTCT-TCCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSCCCC--CGG
T ss_pred             cCCcccCchhhccCCceeEEECCCCC-CcccccchhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCcccc--ccc
Confidence            88753322235667888888888875 33222  12357788888777332212236677888888888887744  222


Q ss_pred             HhcCCCccceeccccccccccccc-cccccceEeccccccccccc--ccCCCcceEEecce
Q 014120          169 QISELPFLEYLALHYCMKLRSINI-SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNY  226 (430)
Q Consensus       169 l~~~~p~Le~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~  226 (430)
                       +..++.|+.|+++++......+. ..++|+.|++++| .++.+.  -..++|+.+...++
T Consensus       195 -~~~l~~L~~L~l~~n~l~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n  253 (347)
T 4fmz_A          195 -LASLTSLHYFTAYVNQITDITPVANMTRLNSLKIGNN-KITDLSPLANLSQLTWLEIGTN  253 (347)
T ss_dssp             -GGGCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSS
T ss_pred             -ccCCCccceeecccCCCCCCchhhcCCcCCEEEccCC-ccCCCcchhcCCCCCEEECCCC
Confidence             56777888888876543221112 2567888888777 454433  23466666665544

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.58  E-value=1.2e-15  Score=160.74  Aligned_cols=286  Identities=12%  Similarity=0.081  Sum_probs=187.5

Q ss_pred             CCcccc--CCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeec-CChHHHHHHhcC------CCCccEEEeeeCCCC
Q 014120           28 LPQIVF--YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAG------CPLIEYININNCPGL   96 (430)
Q Consensus        28 LP~~l~--~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~------~p~Le~L~L~~c~~l   96 (430)
                      +|+.+.  ++++|++|+|++|.+..  |..+.++++|++|+|++|. +++..++..+..      +++|++|++++|..-
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            999999  99999999999987543  6788999999999999998 777445655555      499999999998543


Q ss_pred             Ccc----ccCCCCCcCEEEcCCCcCCce-EeE--eeccceeEEEeecCCCC-ceeccCCCCc-CceEEccCCCCChHHHH
Q 014120           97 KSL----QLLGLNKLKEIKLDSNRCGLE-RVY--INGVNVHSVDIKVYLEP-CEVNVSSCKN-LTHLRLDGLSITDKWLY  167 (430)
Q Consensus        97 ~~l----~l~~~~~L~~L~l~~c~~~l~-~l~--i~~p~L~~L~l~~~~~~-~~~~~~~l~~-L~~L~L~~~~i~~~~l~  167 (430)
                       .+    .+.++++|++|++++|.  +. .+.  ...++|++|++++.... .+..+.++++ |+.|++++|.++  .++
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~--l~g~ip~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~Ls~N~l~--~lp  393 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQ--LEGKLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLK--YIP  393 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCC--CEEECCCCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEECCSSCCS--SCC
T ss_pred             -ccCchhhhccCCCCCEEeCcCCc--CccchhhhCCCCCCCEEECCCCccccccHhhhhhcccCcEEEccCCcCc--ccc
Confidence             33    35678999999999875  22 332  23578999999883222 2345778888 999999999985  455


Q ss_pred             HHhcC--CCccceeccccccccccccc----------cccccceEeccccccccccc---c-cCCCcceEEeccee----
Q 014120          168 NQISE--LPFLEYLALHYCMKLRSINI----------SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV----  227 (430)
Q Consensus       168 ~l~~~--~p~Le~L~L~~c~~l~~l~~----------~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~----  227 (430)
                      ..+..  +++|+.|+++++.....++.          ..++|+.|+++++ .++.+.   + ..++|+.+...++.    
T Consensus       394 ~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i  472 (636)
T 4eco_A          394 NIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN-QISKFPKELFSTGSPLSSINLMGNMLTEI  472 (636)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSS-CCCSCCTHHHHTTCCCSEEECCSSCCSBC
T ss_pred             hhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCC-ccCcCCHHHHccCCCCCEEECCCCCCCCc
Confidence            54444  34899999987764433322          2358999999988 666554   2 25888888887665    


Q ss_pred             eEEeccc--------cccceeEEEeeecCCchHHHHHHHHHH--hhCCCCceEeeeEeeccceecCcccccccCCCCCCc
Q 014120          228 ESFSSNA--------LALSQTLLCFISHPVDNEWYLKFIKLL--ARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYH  297 (430)
Q Consensus       228 ~~~~~~~--------~sL~~v~l~~~~~~~~~~~~~~l~~~l--~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L  297 (430)
                      |......        ..++.+++.-+...       .+...+  ..+.+++.|++..+....  +|..+.     .+++|
T Consensus       473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-------~lp~~~~~~~l~~L~~L~Ls~N~l~~--ip~~~~-----~l~~L  538 (636)
T 4eco_A          473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-------KLSDDFRATTLPYLVGIDLSYNSFSK--FPTQPL-----NSSTL  538 (636)
T ss_dssp             CSSSSEETTEECTTGGGCCEEECCSSCCC-------BCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGG-----GCSSC
T ss_pred             CHHHhccccccccccCCccEEECcCCcCC-------ccChhhhhccCCCcCEEECCCCCCCC--cChhhh-----cCCCC
Confidence            1111111        15555555321111       112223  367788888877665442  454433     24778


Q ss_pred             ceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120          298 KHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE  333 (430)
Q Consensus       298 ~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~  333 (430)
                      +.|.+..+...+...+.+.++.-+..+|+|++|.+.
T Consensus       539 ~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls  574 (636)
T 4eco_A          539 KGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIG  574 (636)
T ss_dssp             CEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             CEEECCCCcccccCcccccChHHHhcCCCCCEEECC
Confidence            888885321000111222223345778888888884

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.58  E-value=9.9e-16  Score=164.79  Aligned_cols=197  Identities=17%  Similarity=0.082  Sum_probs=107.1

Q ss_pred             CCccccCCCCccEEEEcCccCCC--CC--CCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc--cc-
Q 014120           28 LPQIVFYLKSIYVLDFEFCKLEP--PR--STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS--LQ-  100 (430)
Q Consensus        28 LP~~l~~~~~L~~L~Ls~~~~~~--~~--~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~--l~-  100 (430)
                      +|+.+..+++|++|+|++|.+..  |.  .+.++++|++|+|++|.++......+..++++|++|++++|..-..  .. 
T Consensus        92 l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~  171 (768)
T 3rgz_A           92 SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGW  171 (768)
T ss_dssp             CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHH
T ss_pred             CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhh
Confidence            34445555555555555544331  22  4455555555555555442211111123455555555555432110  01 


Q ss_pred             --cCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCcc
Q 014120          101 --LLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFL  176 (430)
Q Consensus       101 --l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~L  176 (430)
                        +.++++|++|++++|. .+.... ..+++|++|++++.... ....++++++|++|++++|.+++ .++..+.++++|
T Consensus       172 ~~~~~l~~L~~L~Ls~n~l~~~~~~-~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~-~~~~~l~~l~~L  249 (768)
T 3rgz_A          172 VLSDGCGELKHLAISGNKISGDVDV-SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG-DFSRAISTCTEL  249 (768)
T ss_dssp             HHTTCCTTCCEEECCSSEEESCCBC-TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS-CHHHHTTTCSSC
T ss_pred             hhhccCCCCCEEECCCCcccccCCc-ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC-cccHHHhcCCCC
Confidence              3455666777766654 111111 23678888888773222 11237788889999999888853 456677888999


Q ss_pred             ceeccccccccccccc-cccccceEecccccccc-ccc---cc-CCCcceEEeccee
Q 014120          177 EYLALHYCMKLRSINI-SSPRLKELVFERCEELV-EFE---LD-TPNLSIFKCFNYV  227 (430)
Q Consensus       177 e~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~-~~~---i~-~p~L~~~~~~~~~  227 (430)
                      +.|++++|.....++. ..++|++|++++| .++ .+.   .. .++|+.+...++.
T Consensus       250 ~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~ip~~~~~~~~~L~~L~Ls~n~  305 (768)
T 3rgz_A          250 KLLNISSNQFVGPIPPLPLKSLQYLSLAEN-KFTGEIPDFLSGACDTLTGLDLSGNH  305 (768)
T ss_dssp             CEEECCSSCCEESCCCCCCTTCCEEECCSS-EEEESCCCCSCTTCTTCSEEECCSSE
T ss_pred             CEEECCCCcccCccCccccCCCCEEECcCC-ccCCccCHHHHhhcCcCCEEECcCCc
Confidence            9999887764433333 2466777777776 333 222   12 2666666665543

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.57  E-value=9.5e-15  Score=147.99  Aligned_cols=204  Identities=17%  Similarity=0.152  Sum_probs=121.2

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L   90 (430)
                      .+++.+++.  .+....+| .+..+++|++|++++|.+.....+.++++|++|++++|.+++..  . +.++++|++|++
T Consensus        46 ~~l~~L~l~--~~~i~~l~-~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~--~-~~~l~~L~~L~L  119 (466)
T 1o6v_A           46 DQVTTLQAD--RLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADIT--P-LANLTNLTGLTL  119 (466)
T ss_dssp             HTCCEEECC--SSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCCEEEC
T ss_pred             ccccEEecC--CCCCccCc-chhhhcCCCEEECCCCccCCchhhhccccCCEEECCCCccccCh--h-hcCCCCCCEEEC
Confidence            456666653  34456677 46678999999999987665323788999999999999885432  2 778899999999


Q ss_pred             eeCCCCCccccCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120           91 NNCPGLKSLQLLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (430)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l  169 (430)
                      ++|..-....+.++++|++|++++|. ..+.. ...+++|++|.+.+.... ...+.++++|+.|++++|.+++-  + .
T Consensus       120 ~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~~~~~-~~~~~~l~~L~~L~l~~n~l~~~--~-~  194 (466)
T 1o6v_A          120 FNNQITDIDPLKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGNQVTD-LKPLANLTTLERLDISSNKVSDI--S-V  194 (466)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEESCCC-CGGGTTCTTCCEEECCSSCCCCC--G-G
T ss_pred             CCCCCCCChHHcCCCCCCEEECCCCccCCChh-hccCCcccEeecCCcccC-chhhccCCCCCEEECcCCcCCCC--h-h
Confidence            88753222236677888888888765 22211 112566666666541111 12356666677777766666431  1 2


Q ss_pred             hcCCCccceeccccccccccccc-cccccceEeccccccccccc--ccCCCcceEEecce
Q 014120          170 ISELPFLEYLALHYCMKLRSINI-SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNY  226 (430)
Q Consensus       170 ~~~~p~Le~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~  226 (430)
                      +..+++|+.|++++|..-...+. ..++|+.|++++| .++.+.  -..++|+.+...+.
T Consensus       195 l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~l~~n  253 (466)
T 1o6v_A          195 LAKLTNLESLIATNNQISDITPLGILTNLDELSLNGN-QLKDIGTLASLTNLTDLDLANN  253 (466)
T ss_dssp             GGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSS-CCCCCGGGGGCTTCSEEECCSS
T ss_pred             hccCCCCCEEEecCCcccccccccccCCCCEEECCCC-CcccchhhhcCCCCCEEECCCC
Confidence            45566666666665542221111 1345666666555 333332  12345555554443

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.57  E-value=8.7e-15  Score=142.13  Aligned_cols=270  Identities=14%  Similarity=0.104  Sum_probs=185.0

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L   90 (430)
                      .+++++++  +++....+|. +..+++|++|++++|.+.....+.++++|++|++++|.+++.  .. +..+++|+.|++
T Consensus        66 ~~L~~L~l--~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~l~~n~i~~~--~~-~~~l~~L~~L~l  139 (347)
T 4fmz_A           66 TNLEYLNL--NGNQITDISP-LSNLVKLTNLYIGTNKITDISALQNLTNLRELYLNEDNISDI--SP-LANLTKMYSLNL  139 (347)
T ss_dssp             TTCCEEEC--CSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECTTSCCCCC--GG-GTTCTTCCEEEC
T ss_pred             CCccEEEc--cCCccccchh-hhcCCcCCEEEccCCcccCchHHcCCCcCCEEECcCCcccCc--hh-hccCCceeEEEC
Confidence            45666665  4455677776 778999999999999876655688999999999999998543  22 789999999999


Q ss_pred             eeCCCCCcc-ccCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHH
Q 014120           91 NNCPGLKSL-QLLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN  168 (430)
Q Consensus        91 ~~c~~l~~l-~l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~  168 (430)
                      ++|..+..+ .+.++++|++|++++|. ..+.. ...+++|++|++++........+..+++|+.|++++|.+++...  
T Consensus       140 ~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--  216 (347)
T 4fmz_A          140 GANHNLSDLSPLSNMTGLNYLTVTESKVKDVTP-IANLTDLYSLSLNYNQIEDISPLASLTSLHYFTAYVNQITDITP--  216 (347)
T ss_dssp             TTCTTCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCCGG--
T ss_pred             CCCCCcccccchhhCCCCcEEEecCCCcCCchh-hccCCCCCEEEccCCcccccccccCCCccceeecccCCCCCCch--
Confidence            999765543 35678999999999876 12222 12468999999988433322337788999999999999865222  


Q ss_pred             HhcCCCccceecccccccccccc-c-cccccceEeccccccccccc--ccCCCcceEEecceeeEEeccccccceeEEEe
Q 014120          169 QISELPFLEYLALHYCMKLRSIN-I-SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNYVESFSSNALALSQTLLCF  244 (430)
Q Consensus       169 l~~~~p~Le~L~L~~c~~l~~l~-~-~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~~~~~~~~~~sL~~v~l~~  244 (430)
                       +..++.|+.|++++|..- .++ . ..++|+.|++++| .++.+.  -..++|+.+...++.         +.      
T Consensus       217 -~~~~~~L~~L~l~~n~l~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~---------l~------  278 (347)
T 4fmz_A          217 -VANMTRLNSLKIGNNKIT-DLSPLANLSQLTWLEIGTN-QISDINAVKDLTKLKMLNVGSNQ---------IS------  278 (347)
T ss_dssp             -GGGCTTCCEEECCSSCCC-CCGGGTTCTTCCEEECCSS-CCCCCGGGTTCTTCCEEECCSSC---------CC------
T ss_pred             -hhcCCcCCEEEccCCccC-CCcchhcCCCCCEEECCCC-ccCCChhHhcCCCcCEEEccCCc---------cC------
Confidence             678999999999877532 222 2 3678999999998 666543  234666666655442         00      


Q ss_pred             eecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcC
Q 014120          245 ISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWIT  324 (430)
Q Consensus       245 ~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~c  324 (430)
                          +.        ..+..+.+++.|++..+.... ..+..+     ..+++|+.|.+..++      +.++.+  +..+
T Consensus       279 ----~~--------~~~~~l~~L~~L~L~~n~l~~-~~~~~l-----~~l~~L~~L~L~~n~------l~~~~~--~~~l  332 (347)
T 4fmz_A          279 ----DI--------SVLNNLSQLNSLFLNNNQLGN-EDMEVI-----GGLTNLTTLFLSQNH------ITDIRP--LASL  332 (347)
T ss_dssp             ----CC--------GGGGGCTTCSEEECCSSCCCG-GGHHHH-----HTCTTCSEEECCSSS------CCCCGG--GGGC
T ss_pred             ----CC--------hhhcCCCCCCEEECcCCcCCC-cChhHh-----hccccCCEEEccCCc------cccccC--hhhh
Confidence                00        124566778877776665432 111111     135778888887764      222222  6788


Q ss_pred             CCCceeeEe
Q 014120          325 PHAETLSIE  333 (430)
Q Consensus       325 P~Le~L~i~  333 (430)
                      |+|++|.+.
T Consensus       333 ~~L~~L~l~  341 (347)
T 4fmz_A          333 SKMDSADFA  341 (347)
T ss_dssp             TTCSEESSS
T ss_pred             hccceeehh
Confidence            888888873

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.56  E-value=2.8e-15  Score=162.12  Aligned_cols=286  Identities=11%  Similarity=0.055  Sum_probs=186.8

Q ss_pred             CCcccc--CCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeec-CChHHHHHHhc-------CCCCccEEEeeeCCC
Q 014120           28 LPQIVF--YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVA-------GCPLIEYININNCPG   95 (430)
Q Consensus        28 LP~~l~--~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~-------~~p~Le~L~L~~c~~   95 (430)
                      +|+.+.  ++++|++|+|++|.+..  |..+.++++|+.|+|++|. +++..++..+.       .+|+|+.|++++|..
T Consensus       481 iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L  560 (876)
T 4ecn_A          481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNL  560 (876)
T ss_dssp             TTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCC
T ss_pred             CChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcC
Confidence            999987  89999999999987543  6778999999999999998 77633454333       556999999999864


Q ss_pred             CCcc----ccCCCCCcCEEEcCCCcCCceEeE--eeccceeEEEeecCCCC-ceeccCCCCc-CceEEccCCCCChHHHH
Q 014120           96 LKSL----QLLGLNKLKEIKLDSNRCGLERVY--INGVNVHSVDIKVYLEP-CEVNVSSCKN-LTHLRLDGLSITDKWLY  167 (430)
Q Consensus        96 l~~l----~l~~~~~L~~L~l~~c~~~l~~l~--i~~p~L~~L~l~~~~~~-~~~~~~~l~~-L~~L~L~~~~i~~~~l~  167 (430)
                      - .+    .+.++++|+.|++++|.  +..+.  -..++|+.|++++..+. .+..+.++++ |+.|++++|.++  .++
T Consensus       561 ~-~ip~~~~l~~L~~L~~L~Ls~N~--l~~lp~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~--~lp  635 (876)
T 4ecn_A          561 E-EFPASASLQKMVKLGLLDCVHNK--VRHLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK--YIP  635 (876)
T ss_dssp             C-BCCCHHHHTTCTTCCEEECTTSC--CCBCCCCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC--SCC
T ss_pred             C-ccCChhhhhcCCCCCEEECCCCC--cccchhhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC--cCc
Confidence            3 33    35678999999999875  22332  23689999999883332 2345778888 999999999985  455


Q ss_pred             HHhcCCC--ccceeccccccccccccc--------cccccceEeccccccccccc---c-cCCCcceEEeccee----eE
Q 014120          168 NQISELP--FLEYLALHYCMKLRSINI--------SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV----ES  229 (430)
Q Consensus       168 ~l~~~~p--~Le~L~L~~c~~l~~l~~--------~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~----~~  229 (430)
                      ..+...+  +|+.|+++++.....++.        ..++|+.|++++| .++.+.   + ..++|+.+...++.    |.
T Consensus       636 ~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N-~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~  714 (876)
T 4ecn_A          636 NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYN-EIQKFPTELFATGSPISTIILSNNLMTSIPE  714 (876)
T ss_dssp             SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSS-CCCSCCHHHHHTTCCCSEEECCSCCCSCCCT
T ss_pred             hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCC-cCCccCHHHHccCCCCCEEECCCCcCCccCh
Confidence            5554443  499999987764332221        1347999999988 666554   2 45788888887764    21


Q ss_pred             Eeccc--------cccceeEEEeeecCCchHHHHHHHHHHh--hCCCCceEeeeEeeccceecCcccccccCCCCCCcce
Q 014120          230 FSSNA--------LALSQTLLCFISHPVDNEWYLKFIKLLA--RFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKH  299 (430)
Q Consensus       230 ~~~~~--------~sL~~v~l~~~~~~~~~~~~~~l~~~l~--~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~  299 (430)
                      .....        +.|+.+++.-+...       .+...+.  ++.+++.|++..+....  +|..+.     .+++|+.
T Consensus       715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-------~lp~~l~~~~l~~L~~L~Ls~N~L~~--lp~~l~-----~L~~L~~  780 (876)
T 4ecn_A          715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-------SLSDDFRATTLPYLSNMDVSYNCFSS--FPTQPL-----NSSQLKA  780 (876)
T ss_dssp             TSSSCTTSCCTTGGGCCEEECCSSCCC-------CCCGGGSTTTCTTCCEEECCSSCCSS--CCCGGG-----GCTTCCE
T ss_pred             HHhccccccccccCCccEEECCCCCCc-------cchHHhhhccCCCcCEEEeCCCCCCc--cchhhh-----cCCCCCE
Confidence            11111        15555555321111       1122233  67788888877665442  444332     3477888


Q ss_pred             EEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120          300 VSFSVLSEILEVSLANLVDCLLWITPHAETLSIE  333 (430)
Q Consensus       300 L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~  333 (430)
                      |.+..++..+...+.+.++.-+..+|+|++|.+.
T Consensus       781 L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls  814 (876)
T 4ecn_A          781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIG  814 (876)
T ss_dssp             EECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECC
T ss_pred             EECCCCCCcccccccccChHHHhcCCCCCEEECC
Confidence            8886532000011222224445778888888884

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.55  E-value=2.3e-15  Score=161.91  Aligned_cols=193  Identities=15%  Similarity=0.108  Sum_probs=129.1

Q ss_pred             cCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEE
Q 014120           33 FYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIK  111 (430)
Q Consensus        33 ~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~  111 (430)
                      ..+++|++|++++|.+.. +..+.++++|++|+|++|.+++. ++..+.++++|++|++++|..........+++|++|+
T Consensus       197 ~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~  275 (768)
T 3rgz_A          197 SRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD-FSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLS  275 (768)
T ss_dssp             TTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC-HHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEE
T ss_pred             ccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc-ccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEE
Confidence            567888888888877654 23478889999999999888654 3566788999999999988643333333678899999


Q ss_pred             cCCCc-C-CceEe-EeeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccc
Q 014120          112 LDSNR-C-GLERV-YINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMK  186 (430)
Q Consensus       112 l~~c~-~-~l~~l-~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~  186 (430)
                      +++|. . .+... .-.+++|++|++++....  .+..+.++++|++|++++|.+++..-...+.++++|+.|++++|..
T Consensus       276 L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l  355 (768)
T 3rgz_A          276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEF  355 (768)
T ss_dssp             CCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEE
T ss_pred             CcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCcc
Confidence            98875 1 11111 111488999998873221  2356788899999999999885332234577899999999987764


Q ss_pred             ccccccc----ccccceEeccccccccc-cc--c-c--CCCcceEEeccee
Q 014120          187 LRSINIS----SPRLKELVFERCEELVE-FE--L-D--TPNLSIFKCFNYV  227 (430)
Q Consensus       187 l~~l~~~----~~~L~~L~l~~c~~L~~-~~--i-~--~p~L~~~~~~~~~  227 (430)
                      ...++..    .++|+.|++++| .++. +.  + .  .++++.+...++.
T Consensus       356 ~~~~p~~l~~l~~~L~~L~Ls~N-~l~~~~~~~~~~~~~~~L~~L~L~~n~  405 (768)
T 3rgz_A          356 SGELPESLTNLSASLLTLDLSSN-NFSGPILPNLCQNPKNTLQELYLQNNG  405 (768)
T ss_dssp             EECCCTTHHHHTTTCSEEECCSS-EEEEECCTTTTCSTTCCCCEEECCSSE
T ss_pred             CccccHHHHhhhcCCcEEEccCC-CcCCCcChhhhhcccCCccEEECCCCc
Confidence            4344432    237888888877 3331 11  1 1  3566666665554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.55  E-value=2.1e-15  Score=153.10  Aligned_cols=286  Identities=16%  Similarity=0.114  Sum_probs=147.7

Q ss_pred             cCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc
Q 014120           21 GCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS   98 (430)
Q Consensus        21 ~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~   98 (430)
                      .......+|..+.  +++++|+|+++.+..  +..+.++++|++|+|++|.++... +..+.++++|++|+|++|. ++.
T Consensus        19 ~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~   94 (477)
T 2id5_A           19 HRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVE-PGAFNNLFNLRTLGLRSNR-LKL   94 (477)
T ss_dssp             CSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSC-CCS
T ss_pred             CCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeC-hhhhhCCccCCEEECCCCc-CCc
Confidence            3344556665542  567777777766543  356677777777777777664321 2345677777777777764 222


Q ss_pred             c---ccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120           99 L---QLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (430)
Q Consensus        99 l---~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l  169 (430)
                      +   .+.++++|++|++++|.  +..+.    -.+++|++|++++..+.  ....+.++++|+.|++++|.+++ ..+..
T Consensus        95 ~~~~~~~~l~~L~~L~Ls~n~--i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~  171 (477)
T 2id5_A           95 IPLGVFTGLSNLTKLDISENK--IVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTS-IPTEA  171 (477)
T ss_dssp             CCTTSSTTCTTCCEEECTTSC--CCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSS-CCHHH
T ss_pred             cCcccccCCCCCCEEECCCCc--cccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcc-cChhH
Confidence            2   24456777777777654  22221    13567777777663222  12346667777777777777643 12334


Q ss_pred             hcCCCccceeccccccccccccc----cccccceEeccccccccccc---ccCCCcceEEeccee----eE-Eecccccc
Q 014120          170 ISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV----ES-FSSNALAL  237 (430)
Q Consensus       170 ~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~~----~~-~~~~~~sL  237 (430)
                      +.++++|+.|+++++.. ..++.    ..++|+.|++++|..+..+.   +..++|+++...+..    |. .......|
T Consensus       172 l~~l~~L~~L~l~~n~i-~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  250 (477)
T 2id5_A          172 LSHLHGLIVLRLRHLNI-NAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYL  250 (477)
T ss_dssp             HTTCTTCCEEEEESCCC-CEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTC
T ss_pred             hcccCCCcEEeCCCCcC-cEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCcccc
Confidence            56677777777765432 11111    24566667766664443332   333456666555443    10 01122344


Q ss_pred             ceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHH
Q 014120          238 SQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLV  317 (430)
Q Consensus       238 ~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~  317 (430)
                      +.+++.-+...+..      ...+.++.+++.|++..+.... +.+..     +..+++|+.|.+..+.      +..+-
T Consensus       251 ~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~-~~~~~-----~~~l~~L~~L~L~~N~------l~~~~  312 (477)
T 2id5_A          251 RFLNLSYNPISTIE------GSMLHELLRLQEIQLVGGQLAV-VEPYA-----FRGLNYLRVLNVSGNQ------LTTLE  312 (477)
T ss_dssp             CEEECCSSCCCEEC------TTSCTTCTTCCEEECCSSCCSE-ECTTT-----BTTCTTCCEEECCSSC------CSCCC
T ss_pred             CeeECCCCcCCccC------hhhccccccCCEEECCCCccce-ECHHH-----hcCcccCCEEECCCCc------CceeC
Confidence            44444211000000      1223455666666655443221 11111     2234566666665542      22222


Q ss_pred             HHHHhcCCCCceeeE
Q 014120          318 DCLLWITPHAETLSI  332 (430)
Q Consensus       318 ~~LL~~cP~Le~L~i  332 (430)
                      +..+..+|+|++|.+
T Consensus       313 ~~~~~~l~~L~~L~l  327 (477)
T 2id5_A          313 ESVFHSVGNLETLIL  327 (477)
T ss_dssp             GGGBSCGGGCCEEEC
T ss_pred             HhHcCCCcccCEEEc
Confidence            233456667777766

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.54  E-value=4.1e-14  Score=143.32  Aligned_cols=287  Identities=14%  Similarity=0.108  Sum_probs=149.2

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L   90 (430)
                      ..+++|+|  +++....+|+ +.++++|++|+++++.+.....+.++++|++|+|++|.+++..  . +.++++|++|++
T Consensus        68 ~~L~~L~L--s~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~l  141 (466)
T 1o6v_A           68 NNLTQINF--SNNQLTDITP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID--P-LKNLTNLNRLEL  141 (466)
T ss_dssp             TTCCEEEC--CSSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCCG--G-GTTCTTCSEEEE
T ss_pred             cCCCEEEC--CCCccCCchh-hhccccCCEEECCCCccccChhhcCCCCCCEEECCCCCCCCCh--H-HcCCCCCCEEEC
Confidence            45555554  4455666665 7778888888888877655323777888888888888775431  1 677888888888


Q ss_pred             eeCCCCCccc---------------------cCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCCCceeccCCC
Q 014120           91 NNCPGLKSLQ---------------------LLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSC  148 (430)
Q Consensus        91 ~~c~~l~~l~---------------------l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l  148 (430)
                      ++|..-..-.                     +.++++|+.|++++|. ..+.. ...+++|++|++++........+..+
T Consensus       142 ~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~~l  220 (466)
T 1o6v_A          142 SSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGIL  220 (466)
T ss_dssp             EEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGGGGGC
T ss_pred             CCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccccccc
Confidence            8764211112                     2334555555555543 11110 01245566666555222211224455


Q ss_pred             CcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc-cccccceEeccccccccccc--ccCCCcceEEecc
Q 014120          149 KNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI-SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFN  225 (430)
Q Consensus       149 ~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~  225 (430)
                      ++|+.|++++|.+++-   ..+..+++|+.|++++|..-...+. ..++|+.|++++| .++.+.  -..++|+.+...+
T Consensus       221 ~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~l~~L~~L~L~~  296 (466)
T 1o6v_A          221 TNLDELSLNGNQLKDI---GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGAN-QISNISPLAGLTALTNLELNE  296 (466)
T ss_dssp             TTCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSS-CCCCCGGGTTCTTCSEEECCS
T ss_pred             CCCCEEECCCCCcccc---hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCC-ccCccccccCCCccCeEEcCC
Confidence            5666666666655431   1234566666666655442211111 2455666666665 343322  2345666666554


Q ss_pred             ee--eEE-eccccccceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEE
Q 014120          226 YV--ESF-SSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSF  302 (430)
Q Consensus       226 ~~--~~~-~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l  302 (430)
                      ..  ... ......++.+++..+...+..       . +..+.+++.|++..+....  ++      ....+++|+.|.+
T Consensus       297 n~l~~~~~~~~l~~L~~L~L~~n~l~~~~-------~-~~~l~~L~~L~l~~n~l~~--~~------~l~~l~~L~~L~l  360 (466)
T 1o6v_A          297 NQLEDISPISNLKNLTYLTLYFNNISDIS-------P-VSSLTKLQRLFFYNNKVSD--VS------SLANLTNINWLSA  360 (466)
T ss_dssp             SCCSCCGGGGGCTTCSEEECCSSCCSCCG-------G-GGGCTTCCEEECCSSCCCC--CG------GGTTCTTCCEEEC
T ss_pred             CcccCchhhcCCCCCCEEECcCCcCCCch-------h-hccCccCCEeECCCCccCC--ch------hhccCCCCCEEeC
Confidence            43  000 122334444444221111110       1 3566677766665554321  11      1224567777777


Q ss_pred             EEEeccchhhHHHHHHHHHhcCCCCceeeE
Q 014120          303 SVLSEILEVSLANLVDCLLWITPHAETLSI  332 (430)
Q Consensus       303 ~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i  332 (430)
                      ..+.      +.++.+  +..+|+|+.|.+
T Consensus       361 ~~n~------l~~~~~--~~~l~~L~~L~l  382 (466)
T 1o6v_A          361 GHNQ------ISDLTP--LANLTRITQLGL  382 (466)
T ss_dssp             CSSC------CCBCGG--GTTCTTCCEEEC
T ss_pred             CCCc------cCccch--hhcCCCCCEEec
Confidence            6653      222223  677888888877

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.54  E-value=1.3e-14  Score=146.65  Aligned_cols=295  Identities=15%  Similarity=0.107  Sum_probs=175.6

Q ss_pred             hCCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEE
Q 014120           10 ASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (430)
Q Consensus        10 ~~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~   89 (430)
                      -..++.+++.  ++....+| .+..+++|++|+++++.+... .+.++++|++|+|++|.+++.  +  +.++++|++|+
T Consensus        41 l~~L~~L~Ls--~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~~-~~~~l~~L~~L~Ls~N~l~~~--~--~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCH--NSSITDMT-GIEKLTGLTKLICTSNNITTL-DLSQNTNLTYLACDSNKLTNL--D--VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECC--SSCCCCCT-TGGGCTTCSEEECCSSCCSCC-CCTTCTTCSEEECCSSCCSCC--C--CTTCTTCCEEE
T ss_pred             cCCCCEEEcc--CCCcccCh-hhcccCCCCEEEccCCcCCeE-ccccCCCCCEEECcCCCCcee--e--cCCCCcCCEEE
Confidence            3556666654  34566677 678899999999999887663 378899999999999988653  2  67899999999


Q ss_pred             eeeCCCCCccccCCCCCcCEEEcCCCcCCceEeEe-eccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHH
Q 014120           90 INNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN  168 (430)
Q Consensus        90 L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i-~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~  168 (430)
                      +++|. ++.+.+..+++|++|+++.|.  +..+.+ .+++|++|++++........+..+++|+.|++++|.+++  ++ 
T Consensus       113 L~~N~-l~~l~~~~l~~L~~L~l~~N~--l~~l~l~~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~--l~-  186 (457)
T 3bz5_A          113 CDTNK-LTKLDVSQNPLLTYLNCARNT--LTEIDVSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITE--LD-  186 (457)
T ss_dssp             CCSSC-CSCCCCTTCTTCCEEECTTSC--CSCCCCTTCTTCCEEECTTCSCCCCCCCTTCTTCCEEECCSSCCCC--CC-
T ss_pred             CCCCc-CCeecCCCCCcCCEEECCCCc--cceeccccCCcCCEEECCCCCcccccccccCCcCCEEECCCCccce--ec-
Confidence            99874 455567778889999988875  333333 367788888877311123456777888888888887754  33 


Q ss_pred             HhcCCCccceecccccccccccccc-ccccceEecccccccccccc-cCCCcceEEeccee--eEEeccccccceeEEEe
Q 014120          169 QISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEFEL-DTPNLSIFKCFNYV--ESFSSNALALSQTLLCF  244 (430)
Q Consensus       169 l~~~~p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c~~L~~~~i-~~p~L~~~~~~~~~--~~~~~~~~sL~~v~l~~  244 (430)
                       +..++.|+.|+++++. +..++.. .++|+.|+++++ .++.+.+ ..++|+++...++.  .......+.+..+++..
T Consensus       187 -l~~l~~L~~L~l~~N~-l~~~~l~~l~~L~~L~Ls~N-~l~~ip~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~  263 (457)
T 3bz5_A          187 -VSQNKLLNRLNCDTNN-ITKLDLNQNIQLTFLDCSSN-KLTEIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQ  263 (457)
T ss_dssp             -CTTCTTCCEEECCSSC-CSCCCCTTCTTCSEEECCSS-CCSCCCCTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTT
T ss_pred             -cccCCCCCEEECcCCc-CCeeccccCCCCCEEECcCC-cccccCccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccC
Confidence             5677788888876554 3333332 467777777776 5555543 34666666665543  00011112222221100


Q ss_pred             eecC----CchHHHHHHHHHHhhCCCCceEeeeEeeccceecCc---ccccccCCCCCCcceEEEEEEeccchhhHHHHH
Q 014120          245 ISHP----VDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPR---ELREILCPPLTYHKHVSFSVLSEILEVSLANLV  317 (430)
Q Consensus       245 ~~~~----~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~---~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~  317 (430)
                      ..-.    ..+...+.+.  ..++++++.|++..+.... .+|.   .+..+.+...++|+.|.+..+.      +.++ 
T Consensus       264 n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~-~l~~~~~~L~~L~l~~~~~L~~L~L~~N~------l~~l-  333 (457)
T 3bz5_A          264 TDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLY-LLDCQAAGITELDLSQNPKLVYLYLNNTE------LTEL-  333 (457)
T ss_dssp             CCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCC-EEECTTCCCSCCCCTTCTTCCEEECTTCC------CSCC-
T ss_pred             CCCCEEECCCCccCCccc--ccccccCCEEECCCCcccc-eeccCCCcceEechhhcccCCEEECCCCc------cccc-
Confidence            0000    0000000000  1345677777766554321 2221   1222223344677777776553      3232 


Q ss_pred             HHHHhcCCCCceeeEe
Q 014120          318 DCLLWITPHAETLSIE  333 (430)
Q Consensus       318 ~~LL~~cP~Le~L~i~  333 (430)
                      +  +..||+|++|.+.
T Consensus       334 ~--l~~l~~L~~L~l~  347 (457)
T 3bz5_A          334 D--VSHNTKLKSLSCV  347 (457)
T ss_dssp             C--CTTCTTCSEEECC
T ss_pred             c--cccCCcCcEEECC
Confidence            2  6788999998883

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.53  E-value=2.6e-15  Score=156.84  Aligned_cols=69  Identities=16%  Similarity=0.112  Sum_probs=36.7

Q ss_pred             cccC-CccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120           25 IYNL-PQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (430)
Q Consensus        25 ~~~L-P~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c   93 (430)
                      ...+ |..+.++++|++|++++|.+..  +..+.++++|++|+|++|.++...++..++++++|++|++++|
T Consensus        92 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n  163 (606)
T 3vq2_A           92 IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYN  163 (606)
T ss_dssp             CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSS
T ss_pred             ccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCC
Confidence            3344 4444455555555555554332  2345556666666666665543223444556666666666665

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.51  E-value=1.6e-14  Score=150.33  Aligned_cols=268  Identities=11%  Similarity=0.002  Sum_probs=142.2

Q ss_pred             CCCCCCEEEEeeecCC---hHHHHHHhcCCCCccEEEeeeCCCCCc-cccCCCCCcCEEEcCCCcCCce-----EeEeec
Q 014120           56 TLFSLRKLCLSFVHVD---DEVIRDMVAGCPLIEYININNCPGLKS-LQLLGLNKLKEIKLDSNRCGLE-----RVYING  126 (430)
Q Consensus        56 ~l~~L~~L~Ls~~~~~---~~~l~~l~~~~p~Le~L~L~~c~~l~~-l~l~~~~~L~~L~l~~c~~~l~-----~l~i~~  126 (430)
                      ++++|++|+|++|.++   ...+..++.+||+|+.|++++|..-.. -.+.++++|++|.++.+.....     .....+
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~  269 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP  269 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence            3445555555544442   334444455555555555555431100 0112234555555543210000     001124


Q ss_pred             cceeEEEeecC-CCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccc---cccccccceEec
Q 014120          127 VNVHSVDIKVY-LEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI---NISSPRLKELVF  202 (430)
Q Consensus       127 p~L~~L~l~~~-~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~~~~~~L~~L~l  202 (430)
                      ++|+.+.+.+. ....+..+..+++|++|++++|.+++..+..++.++|+|+.|++.++-.-..+   ....++|++|++
T Consensus       270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L  349 (592)
T 3ogk_B          270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI  349 (592)
T ss_dssp             TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred             ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence            56666666541 11122445678899999999999887777778889999999999743221222   223578999999


Q ss_pred             cc----------cccccccc-----ccCCCcceEEeccee-e---E--EeccccccceeEEEeee----cCCchHHHHHH
Q 014120          203 ER----------CEELVEFE-----LDTPNLSIFKCFNYV-E---S--FSSNALALSQTLLCFIS----HPVDNEWYLKF  257 (430)
Q Consensus       203 ~~----------c~~L~~~~-----i~~p~L~~~~~~~~~-~---~--~~~~~~sL~~v~l~~~~----~~~~~~~~~~l  257 (430)
                      .+          |..++...     -..|+|+++.+.... .   .  +....+.++.+++....    ..+. .....+
T Consensus       350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~-p~~~~~  428 (592)
T 3ogk_B          350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL-PLDNGV  428 (592)
T ss_dssp             ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC-CCHHHH
T ss_pred             ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc-hHHHHH
Confidence            85          76665432     235888888873322 0   0  01124457777774211    0110 001135


Q ss_pred             HHHHhhCCCCceEeeeEeeccc-eecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120          258 IKLLARFNLCSNVLNLQCNHEA-VLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE  333 (430)
Q Consensus       258 ~~~l~~l~~l~~L~L~~~~~~~-~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~  333 (430)
                      ..++.++.+++.|++..|.... ......+.    ..+++|+.|.+..+. .  .  ...+..+++.||+|+.|.+.
T Consensus       429 ~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~----~~~~~L~~L~L~~n~-l--~--~~~~~~~~~~~~~L~~L~l~  496 (592)
T 3ogk_B          429 RSLLIGCKKLRRFAFYLRQGGLTDLGLSYIG----QYSPNVRWMLLGYVG-E--S--DEGLMEFSRGCPNLQKLEMR  496 (592)
T ss_dssp             HHHHHHCTTCCEEEEECCGGGCCHHHHHHHH----HSCTTCCEEEECSCC-S--S--HHHHHHHHTCCTTCCEEEEE
T ss_pred             HHHHHhCCCCCEEEEecCCCCccHHHHHHHH----HhCccceEeeccCCC-C--C--HHHHHHHHhcCcccCeeecc
Confidence            5667788889988887655311 11111111    124678888887553 1  1  11335667888888888884

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.51  E-value=3.6e-14  Score=142.85  Aligned_cols=299  Identities=14%  Similarity=0.077  Sum_probs=159.2

Q ss_pred             CceEEEEEecCCccccC-CccccCCCCccEEEEcCccCCC---CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           12 NVKELKLDVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~~L-P~~l~~~~~L~~L~Ls~~~~~~---~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      ++++|+|..  +....+ |..+.++++|++|+++++.+..   +..+.++++|++|+|++|.++.. .+..+.++++|++
T Consensus        31 ~l~~L~Ls~--n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~  107 (455)
T 3v47_A           31 HVNYVDLSL--NSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL-ETGAFNGLANLEV  107 (455)
T ss_dssp             TCCEEECCS--SCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEE-CTTTTTTCTTCCE
T ss_pred             ccCEEEecC--CccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCcc-ChhhccCcccCCE
Confidence            455555433  334444 4455566777777777665431   34566667777777776665432 1233556666666


Q ss_pred             EEeeeCCCCC----ccccCCCCCcCEEEcCCCc-CCceEe--EeeccceeEEEeecCCCC--ceec--------------
Q 014120           88 ININNCPGLK----SLQLLGLNKLKEIKLDSNR-CGLERV--YINGVNVHSVDIKVYLEP--CEVN--------------  144 (430)
Q Consensus        88 L~L~~c~~l~----~l~l~~~~~L~~L~l~~c~-~~l~~l--~i~~p~L~~L~l~~~~~~--~~~~--------------  144 (430)
                      |++++|..-.    .-.+.++++|++|++++|. ..+...  ...+++|++|++++..+.  ....              
T Consensus       108 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l  187 (455)
T 3v47_A          108 LTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRL  187 (455)
T ss_dssp             EECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEEC
T ss_pred             EeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccc
Confidence            6666654211    1114445666666666554 111111  112455666655541111  0011              


Q ss_pred             --------------------cCCCCcCceEEccCCCCChHHHHHHhc--CCCccceecccccccccc---------c---
Q 014120          145 --------------------VSSCKNLTHLRLDGLSITDKWLYNQIS--ELPFLEYLALHYCMKLRS---------I---  190 (430)
Q Consensus       145 --------------------~~~l~~L~~L~L~~~~i~~~~l~~l~~--~~p~Le~L~L~~c~~l~~---------l---  190 (430)
                                          +..+++|+.|++++|.+++.....+..  ..+.|+.|+++++.....         .   
T Consensus       188 ~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~  267 (455)
T 3v47_A          188 SSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF  267 (455)
T ss_dssp             TTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTT
T ss_pred             ccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCccc
Confidence                                123456777888877776533222221  236677777765532211         0   


Q ss_pred             c---ccccccceEeccccccccccc----ccCCCcceEEeccee-e-E---EeccccccceeEEEeeecCCchHHHHHHH
Q 014120          191 N---ISSPRLKELVFERCEELVEFE----LDTPNLSIFKCFNYV-E-S---FSSNALALSQTLLCFISHPVDNEWYLKFI  258 (430)
Q Consensus       191 ~---~~~~~L~~L~l~~c~~L~~~~----i~~p~L~~~~~~~~~-~-~---~~~~~~sL~~v~l~~~~~~~~~~~~~~l~  258 (430)
                      .   ...++|+.|+++++ .++.+.    -..++|+.+...+.. . .   .......++.+++.-+...+.      ..
T Consensus       268 ~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~------~~  340 (455)
T 3v47_A          268 TFKGLEASGVKTCDLSKS-KIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI------DS  340 (455)
T ss_dssp             TTGGGTTSCCCEEECCSS-CCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEE------CG
T ss_pred             ccccccccCceEEEecCc-cccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCc------Ch
Confidence            0   01257888888887 454332    245788888877665 1 1   112344566666532111111      12


Q ss_pred             HHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeE
Q 014120          259 KLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI  332 (430)
Q Consensus       259 ~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i  332 (430)
                      ..+.++.+++.|++..+.... ..+..     ...+++|++|.+..+.      +.++.+..+..+|+|++|.+
T Consensus       341 ~~~~~l~~L~~L~Ls~N~l~~-~~~~~-----~~~l~~L~~L~L~~N~------l~~~~~~~~~~l~~L~~L~l  402 (455)
T 3v47_A          341 RMFENLDKLEVLDLSYNHIRA-LGDQS-----FLGLPNLKELALDTNQ------LKSVPDGIFDRLTSLQKIWL  402 (455)
T ss_dssp             GGGTTCTTCCEEECCSSCCCE-ECTTT-----TTTCTTCCEEECCSSC------CSCCCTTTTTTCTTCCEEEC
T ss_pred             hHhcCcccCCEEECCCCcccc-cChhh-----ccccccccEEECCCCc------cccCCHhHhccCCcccEEEc
Confidence            345778899988887765432 22322     2346889999998763      22232345688999999999

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.51  E-value=2.5e-14  Score=155.35  Aligned_cols=205  Identities=17%  Similarity=0.162  Sum_probs=117.2

Q ss_pred             ecCCccccC-CccccCCCCccEEEEcCccCCC--CC--CCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120           20 VGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PR--STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        20 ~~~~~~~~L-P~~l~~~~~L~~L~Ls~~~~~~--~~--~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      ++++....+ |..+.++++|++|+|++|.+..  +.  .+.++++|++|+|++|.++.......++++++|++|++++|.
T Consensus        80 Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~  159 (844)
T 3j0a_A           80 LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQ  159 (844)
T ss_dssp             CTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSC
T ss_pred             CCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCc
Confidence            333444444 6666677888888888876543  22  377888888888888877543333456788888888888763


Q ss_pred             C---------------CCccccC-------------CCC------CcCEEEcCCCc-C--------------CceEeEee
Q 014120           95 G---------------LKSLQLL-------------GLN------KLKEIKLDSNR-C--------------GLERVYIN  125 (430)
Q Consensus        95 ~---------------l~~l~l~-------------~~~------~L~~L~l~~c~-~--------------~l~~l~i~  125 (430)
                      .               ++.+.++             .++      .|+.|++++|. .              .+..+.+.
T Consensus       160 i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~  239 (844)
T 3j0a_A          160 IFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILA  239 (844)
T ss_dssp             CCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECC
T ss_pred             CCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecc
Confidence            2               2222211             112      27777777662 0              01111111


Q ss_pred             -------------------------ccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccce
Q 014120          126 -------------------------GVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY  178 (430)
Q Consensus       126 -------------------------~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~  178 (430)
                                               .++|+.|++++....  ....+..+++|+.|+|++|.+++ ..+..+.++++|+.
T Consensus       240 ~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~-~~~~~~~~l~~L~~  318 (844)
T 3j0a_A          240 HHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINK-IADEAFYGLDNLQV  318 (844)
T ss_dssp             SSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCE-ECTTTTTTCSSCCE
T ss_pred             cccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCC-CChHHhcCCCCCCE
Confidence                                     256777777663222  13446777888888888887743 12334567788888


Q ss_pred             eccccccccccccc---cccccceEeccccccccccc---c-cCCCcceEEecce
Q 014120          179 LALHYCMKLRSINI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNY  226 (430)
Q Consensus       179 L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~  226 (430)
                      |+++++..-...+.   ..++|+.|+++++ .++.+.   + ..++|+.+...++
T Consensus       319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N  372 (844)
T 3j0a_A          319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDN  372 (844)
T ss_dssp             EEEESCCCSCCCSCSCSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETC
T ss_pred             EECCCCCCCccCHHHhcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCC
Confidence            88876542111111   2456777777766 444332   1 2456666665544

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.50  E-value=7e-15  Score=153.63  Aligned_cols=141  Identities=15%  Similarity=0.126  Sum_probs=76.8

Q ss_pred             ecCCccccC-CccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC-
Q 014120           20 VGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG-   95 (430)
Q Consensus        20 ~~~~~~~~L-P~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~-   95 (430)
                      ++++....+ |..+.++++|++|+|++|.+..  |..+.++++|++|+|++|.++.. .+..+.++++|++|++++|.. 
T Consensus        40 Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~L~~n~i~  118 (606)
T 3t6q_A           40 FSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFM-AETALSGPKALKHLFFIQTGIS  118 (606)
T ss_dssp             CTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEE-CTTTTSSCTTCCEEECTTSCCS
T ss_pred             ccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCccccc-ChhhhcccccccEeeccccCcc
Confidence            333444455 3455567777777777765432  45567777777777777766432 123456677777777776642 


Q ss_pred             -CCccccCCCCCcCEEEcCCCc-CCce-EeEeeccceeEEEeecCCCC--ceeccCCCCcCc--eEEccCCCC
Q 014120           96 -LKSLQLLGLNKLKEIKLDSNR-CGLE-RVYINGVNVHSVDIKVYLEP--CEVNVSSCKNLT--HLRLDGLSI  161 (430)
Q Consensus        96 -l~~l~l~~~~~L~~L~l~~c~-~~l~-~l~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~--~L~L~~~~i  161 (430)
                       +....+.++++|++|++++|. ..+. +....+++|++|++++..+.  .+..++++++|+  .|++++|.+
T Consensus       119 ~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          119 SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence             222345556677777777654 1111 11122566666666662222  122344555555  555555554

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.49  E-value=6.1e-15  Score=149.68  Aligned_cols=277  Identities=15%  Similarity=0.097  Sum_probs=189.2

Q ss_pred             CCceEEEEEecCCccccCC-ccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP-~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      ..++.|+  ++++....++ ..+.++++|++|+|+++.+..  |..+.++++|++|+|++|.++... ...+.++++|++
T Consensus        32 ~~l~~L~--L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  108 (477)
T 2id5_A           32 TETRLLD--LGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIP-LGVFTGLSNLTK  108 (477)
T ss_dssp             TTCSEEE--CCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCC-TTSSTTCTTCCE
T ss_pred             CCCcEEE--CCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccC-cccccCCCCCCE
Confidence            3555555  4445566665 467779999999999987654  578899999999999999885421 234678999999


Q ss_pred             EEeeeCCCC--CccccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCC
Q 014120           88 ININNCPGL--KSLQLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGL  159 (430)
Q Consensus        88 L~L~~c~~l--~~l~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~  159 (430)
                      |+|++|..-  ..-.+.++++|++|+++++.  +..+.    ..+++|++|++++....  ....+.++++|+.|++++|
T Consensus       109 L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n  186 (477)
T 2id5_A          109 LDISENKIVILLDYMFQDLYNLKSLEVGDND--LVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL  186 (477)
T ss_dssp             EECTTSCCCEECTTTTTTCTTCCEEEECCTT--CCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred             EECCCCccccCChhHccccccCCEEECCCCc--cceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence            999998542  22245678999999999874  33332    23689999999983332  1234788999999999999


Q ss_pred             CCChHHHHHHhcCCCccceecccccccccccccc---ccccceEeccccccccccc----ccCCCcceEEeccee-eEE-
Q 014120          160 SITDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVEFE----LDTPNLSIFKCFNYV-ESF-  230 (430)
Q Consensus       160 ~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~----i~~p~L~~~~~~~~~-~~~-  230 (430)
                      .+.. ..+..+..+++|+.|++++|..+..++..   ..+|+.|++++| .++.+.    -..++|+.+...++. ... 
T Consensus       187 ~i~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  264 (477)
T 2id5_A          187 NINA-IRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHC-NLTAVPYLAVRHLVYLRFLNLSYNPISTIE  264 (477)
T ss_dssp             CCCE-ECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESS-CCCSCCHHHHTTCTTCCEEECCSSCCCEEC
T ss_pred             cCcE-eChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCC-cccccCHHHhcCccccCeeECCCCcCCccC
Confidence            8854 12235678999999999998877666543   358999999998 666554    245889999887765 111 


Q ss_pred             ---eccccccceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEe
Q 014120          231 ---SSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLS  306 (430)
Q Consensus       231 ---~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~  306 (430)
                         ......++.+++.-+...+.      ....+.++.+++.|++..+...  .++...    +..+++|+.|.+..++
T Consensus       265 ~~~~~~l~~L~~L~L~~n~l~~~------~~~~~~~l~~L~~L~L~~N~l~--~~~~~~----~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          265 GSMLHELLRLQEIQLVGGQLAVV------EPYAFRGLNYLRVLNVSGNQLT--TLEESV----FHSVGNLETLILDSNP  331 (477)
T ss_dssp             TTSCTTCTTCCEEECCSSCCSEE------CTTTBTTCTTCCEEECCSSCCS--CCCGGG----BSCGGGCCEEECCSSC
T ss_pred             hhhccccccCCEEECCCCccceE------CHHHhcCcccCCEEECCCCcCc--eeCHhH----cCCCcccCEEEccCCC
Confidence               12344566666532111100      0123467788998888766543  233321    2245789999988775

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.49  E-value=4.7e-14  Score=147.35  Aligned_cols=274  Identities=16%  Similarity=0.146  Sum_probs=162.9

Q ss_pred             EEEecCCccccCCcc-ccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120           17 KLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        17 ~L~~~~~~~~~LP~~-l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      .|++..+....+|+. +..+++|++|+++++.+.. |..+.++++|++|++++|.++... +..+.++++|++|++++|.
T Consensus       258 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~  336 (606)
T 3t6q_A          258 SINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLC-QISASNFPSLTHLSIKGNT  336 (606)
T ss_dssp             EEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGG-GGCGGGCTTCSEEECCSCS
T ss_pred             EEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCc-hhhhhccCcCCEEECCCCC
Confidence            355555566667665 5558888888888877654 566788888888888888875431 3456778888888888875


Q ss_pred             CCCc---cccCCCCCcCEEEcCCCcCCceEeE------eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCCh
Q 014120           95 GLKS---LQLLGLNKLKEIKLDSNRCGLERVY------INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITD  163 (430)
Q Consensus        95 ~l~~---l~l~~~~~L~~L~l~~c~~~l~~l~------i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~  163 (430)
                      ....   -.+.++++|++|++++|.  +..+.      ..+++|++|++++....  .+..+.++++|+.|++++|.+++
T Consensus       337 ~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  414 (606)
T 3t6q_A          337 KRLELGTGCLENLENLRELDLSHDD--IETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKV  414 (606)
T ss_dssp             SCCBCCSSTTTTCTTCCEEECCSSC--CCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEEC
T ss_pred             cccccchhhhhccCcCCEEECCCCc--cccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCC
Confidence            4322   235567888888888764  33332      13577788877763221  12456677788888888777643


Q ss_pred             HHHHHHhcCCCccceeccccccccccccc---cccccceEeccccccccccc-------ccCCCcceEEecceeeEEecc
Q 014120          164 KWLYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE-------LDTPNLSIFKCFNYVESFSSN  233 (430)
Q Consensus       164 ~~l~~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~-------i~~p~L~~~~~~~~~~~~~~~  233 (430)
                      ...+..+.+++.|+.|++++|..-...+.   ..++|+.|++++| .++...       -..++|+.+...+..      
T Consensus       415 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~~l~~L~~L~Ls~n~------  487 (606)
T 3t6q_A          415 KDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGN-HFPKGNIQKTNSLQTLGRLEILVLSFCD------  487 (606)
T ss_dssp             CTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTC-BCGGGEECSSCGGGGCTTCCEEECTTSC------
T ss_pred             cccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCC-CCCccccccchhhccCCCccEEECCCCc------
Confidence            32233456777888888876653222221   2567778887777 443311       123455555544432      


Q ss_pred             ccccceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhH
Q 014120          234 ALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSL  313 (430)
Q Consensus       234 ~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~  313 (430)
                         +..    +    .        ...+.++.+++.|++..+.... ..+..     +..+.+| +|.+..+.      +
T Consensus       488 ---l~~----~----~--------~~~~~~l~~L~~L~Ls~N~l~~-~~~~~-----l~~l~~L-~L~L~~N~------l  535 (606)
T 3t6q_A          488 ---LSS----I----D--------QHAFTSLKMMNHVDLSHNRLTS-SSIEA-----LSHLKGI-YLNLASNH------I  535 (606)
T ss_dssp             ---CCE----E----C--------TTTTTTCTTCCEEECCSSCCCG-GGGGG-----GTTCCSC-EEECCSSC------C
T ss_pred             ---cCc----c----C--------hhhhccccCCCEEECCCCccCc-CChhH-----hCccccc-EEECcCCc------c
Confidence               000    0    0        1224567778877776654332 22222     2234555 56655542      2


Q ss_pred             HHHHHHHHhcCCCCceeeE
Q 014120          314 ANLVDCLLWITPHAETLSI  332 (430)
Q Consensus       314 ~~i~~~LL~~cP~Le~L~i  332 (430)
                      .++.+..+..+|+|++|.+
T Consensus       536 ~~~~~~~~~~l~~L~~L~l  554 (606)
T 3t6q_A          536 SIILPSLLPILSQQRTINL  554 (606)
T ss_dssp             CCCCGGGHHHHHTSSEEEC
T ss_pred             cccCHhhcccCCCCCEEeC
Confidence            2232344566678899888

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.48  E-value=2.7e-14  Score=141.06  Aligned_cols=202  Identities=16%  Similarity=0.197  Sum_probs=118.4

Q ss_pred             CCceEEEEEecCCccccCCcccc-CCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVF-YLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~-~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      .+++.+++.-  +....+|..++ .+++|++|+++++.+..  +..+.++++|++|+|++|.++... +..+.++++|++
T Consensus        45 ~~l~~l~l~~--~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  121 (390)
T 3o6n_A           45 NNQKIVTFKN--STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP-PHVFQNVPLLTV  121 (390)
T ss_dssp             CCCSEEEEES--CEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred             CCceEEEecC--CchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC-HHHhcCCCCCCE
Confidence            3455555433  45667776644 47888888888876543  356778888888888888774321 234567888888


Q ss_pred             EEeeeCCCCCccc---cCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCCceeccCCCCcCceEEccCCC
Q 014120           88 ININNCPGLKSLQ---LLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLS  160 (430)
Q Consensus        88 L~L~~c~~l~~l~---l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~  160 (430)
                      |++++|. ++.+.   +.++++|++|++++|.  +..+.    -..++|++|++++.... ...+..+++|+.|++++|.
T Consensus       122 L~L~~n~-l~~l~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          122 LVLERND-LSSLPRGIFHNTPKLTTLSMSNNN--LERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC--CCBCCTTTTSSCTTCCEEECCSSCCS-BCCGGGCTTCSEEECCSSC
T ss_pred             EECCCCc-cCcCCHHHhcCCCCCcEEECCCCc--cCccChhhccCCCCCCEEECCCCcCC-ccccccccccceeeccccc
Confidence            8888764 23322   3556788888888764  22221    13567777777763322 2345556677777777666


Q ss_pred             CChHHHHHHhcCCCccceeccccccccccccc-cccccceEeccccccccccc--ccCCCcceEEeccee
Q 014120          161 ITDKWLYNQISELPFLEYLALHYCMKLRSINI-SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNYV  227 (430)
Q Consensus       161 i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~-~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~~  227 (430)
                      ++.      +...+.|+.|+++++.. ..++. ..++|+.|+++++ .++...  -..|+|+.+...+..
T Consensus       198 l~~------~~~~~~L~~L~l~~n~l-~~~~~~~~~~L~~L~l~~n-~l~~~~~l~~l~~L~~L~Ls~n~  259 (390)
T 3o6n_A          198 LST------LAIPIAVEELDASHNSI-NVVRGPVNVELTILKLQHN-NLTDTAWLLNYPGLVEVDLSYNE  259 (390)
T ss_dssp             CSE------EECCSSCSEEECCSSCC-CEEECCCCSSCCEEECCSS-CCCCCGGGGGCTTCSEEECCSSC
T ss_pred             ccc------cCCCCcceEEECCCCee-eeccccccccccEEECCCC-CCcccHHHcCCCCccEEECCCCc
Confidence            643      12345566666654432 22222 2345666666665 444332  234566666655543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.48  E-value=1e-14  Score=150.43  Aligned_cols=58  Identities=7%  Similarity=-0.020  Sum_probs=38.4

Q ss_pred             HhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeE
Q 014120          261 LARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI  332 (430)
Q Consensus       261 l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i  332 (430)
                      ..++.+++.|++..+...  .+|.. .     .+++|+.|.+..+.      +.++.+..+..+++|+.|.+
T Consensus       447 ~~~l~~L~~L~Ls~N~l~--~ip~~-~-----~l~~L~~L~Ls~N~------l~~~~~~~~~~l~~L~~L~l  504 (549)
T 2z81_A          447 SLFLPRLQELYISRNKLK--TLPDA-S-----LFPVLLVMKISRNQ------LKSVPDGIFDRLTSLQKIWL  504 (549)
T ss_dssp             CCCCTTCCEEECCSSCCS--SCCCG-G-----GCTTCCEEECCSSC------CCCCCTTGGGGCTTCCEEEC
T ss_pred             cccCChhcEEECCCCccC--cCCCc-c-----cCccCCEEecCCCc------cCCcCHHHHhcCcccCEEEe
Confidence            356778888887766543  44432 1     24788888887763      22333444688999999998

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.47  E-value=8.1e-14  Score=134.54  Aligned_cols=218  Identities=16%  Similarity=0.247  Sum_probs=154.1

Q ss_pred             hHHHHHHhC-CceEEEEEecCCccccCCccccCC--CCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHH
Q 014120            3 RCLSYAFAS-NVKELKLDVGCCRIYNLPQIVFYL--KSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDM   78 (430)
Q Consensus         3 ~wi~~a~~~-~v~~L~L~~~~~~~~~LP~~l~~~--~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l   78 (430)
                      +|-+.+... ..+.+++  +.+...  |..+...  ++++.|+++++.+.. +..+.++++|++|+|++|.+++..++..
T Consensus        38 ~W~~~~~~~~~~~~l~l--~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~  113 (336)
T 2ast_B           38 RWYRLASDESLWQTLDL--TGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGI  113 (336)
T ss_dssp             HHHHHHTCSTTSSEEEC--TTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHH
T ss_pred             HHHHHhcCchhheeecc--ccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHH
Confidence            576665432 3555554  332221  4445555  899999999986554 3446689999999999999988878889


Q ss_pred             hcCCCCccEEEeeeCCCCCc---cccCCCCCcCEEEcCCCcCCceE-----eEeeccceeEEEeecC-CCC---ceeccC
Q 014120           79 VAGCPLIEYININNCPGLKS---LQLLGLNKLKEIKLDSNRCGLER-----VYINGVNVHSVDIKVY-LEP---CEVNVS  146 (430)
Q Consensus        79 ~~~~p~Le~L~L~~c~~l~~---l~l~~~~~L~~L~l~~c~~~l~~-----l~i~~p~L~~L~l~~~-~~~---~~~~~~  146 (430)
                      +..|++|++|++++|. +..   -.+..+++|++|++++|. .+..     +.-.+++|++|++++. .+.   ....+.
T Consensus       114 ~~~~~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~L~~~~-~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~  191 (336)
T 2ast_B          114 LSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVA  191 (336)
T ss_dssp             HTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCB-SCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHH
T ss_pred             HhhCCCCCEEeCcCcc-cCHHHHHHHhcCCCCCEEECCCCC-CCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHH
Confidence            9999999999999985 332   135568999999999985 3432     1224788999998874 433   123356


Q ss_pred             CCC-cCceEEccCC--CCChHHHHHHhcCCCccceecccccccccc--ccc--cccccceEeccccccccccc----ccC
Q 014120          147 SCK-NLTHLRLDGL--SITDKWLYNQISELPFLEYLALHYCMKLRS--INI--SSPRLKELVFERCEELVEFE----LDT  215 (430)
Q Consensus       147 ~l~-~L~~L~L~~~--~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~--l~~--~~~~L~~L~l~~c~~L~~~~----i~~  215 (430)
                      .++ +|++|++++|  .+++..++..+.++|+|+.|++++|..+..  +..  ..++|+.|++++|..+....    -..
T Consensus       192 ~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~  271 (336)
T 2ast_B          192 HVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEI  271 (336)
T ss_dssp             HSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGC
T ss_pred             hcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcC
Confidence            788 9999999998  677778888888899999999998875432  111  25789999999986554331    235


Q ss_pred             CCcceEEecce
Q 014120          216 PNLSIFKCFNY  226 (430)
Q Consensus       216 p~L~~~~~~~~  226 (430)
                      |+|+.+...|.
T Consensus       272 ~~L~~L~l~~~  282 (336)
T 2ast_B          272 PTLKTLQVFGI  282 (336)
T ss_dssp             TTCCEEECTTS
T ss_pred             CCCCEEeccCc
Confidence            67777766654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.47  E-value=3.9e-14  Score=148.03  Aligned_cols=154  Identities=16%  Similarity=0.215  Sum_probs=93.6

Q ss_pred             ecCCccccCCccccC-CCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCC
Q 014120           20 VGCCRIYNLPQIVFY-LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL   96 (430)
Q Consensus        20 ~~~~~~~~LP~~l~~-~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l   96 (430)
                      +.++....+|+.++. +++|++|+|+++.+..  +..+.++++|++|+|++|.++.. .+..++++++|++|+|++|. +
T Consensus        58 l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~-l  135 (597)
T 3oja_B           58 FKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYL-PPHVFQNVPLLTVLVLERND-L  135 (597)
T ss_dssp             ESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-C
T ss_pred             eeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCC-CHHHHcCCCCCCEEEeeCCC-C
Confidence            333456667766544 7888888888876543  34677888888888888877442 13345678888888888764 2


Q ss_pred             Cccc---cCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120           97 KSLQ---LLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (430)
Q Consensus        97 ~~l~---l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l  169 (430)
                      +.+.   +.++++|++|++++|.  +..+.    -.+++|++|++++..+. ...+..+++|+.|++++|.++.      
T Consensus       136 ~~l~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~l~~L~~L~l~~n~l~~------  206 (597)
T 3oja_B          136 SSLPRGIFHNTPKLTTLSMSNNN--LERIEDDTFQATTSLQNLQLSSNRLT-HVDLSLIPSLFHANVSYNLLST------  206 (597)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC--CCBCCTTTTTTCTTCCEEECTTSCCS-BCCGGGCTTCSEEECCSSCCSE------
T ss_pred             CCCCHHHhccCCCCCEEEeeCCc--CCCCChhhhhcCCcCcEEECcCCCCC-CcChhhhhhhhhhhcccCcccc------
Confidence            2222   4556788888887764  22221    13567777777763322 2344556666666666666533      


Q ss_pred             hcCCCccceeccccc
Q 014120          170 ISELPFLEYLALHYC  184 (430)
Q Consensus       170 ~~~~p~Le~L~L~~c  184 (430)
                      +...+.|+.|+++++
T Consensus       207 l~~~~~L~~L~ls~n  221 (597)
T 3oja_B          207 LAIPIAVEELDASHN  221 (597)
T ss_dssp             EECCTTCSEEECCSS
T ss_pred             ccCCchhheeeccCC
Confidence            123345555555543

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.46  E-value=8.2e-14  Score=144.90  Aligned_cols=289  Identities=14%  Similarity=0.094  Sum_probs=165.0

Q ss_pred             CCCCccEEEEcCccCCC--CCCCC-CCCCCCEEEEeee-cCChHHHHHHhcCCCCccEEEeeeCCC----CCccc--cCC
Q 014120           34 YLKSIYVLDFEFCKLEP--PRSTV-TLFSLRKLCLSFV-HVDDEVIRDMVAGCPLIEYININNCPG----LKSLQ--LLG  103 (430)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~--~~~~~-~l~~L~~L~Ls~~-~~~~~~l~~l~~~~p~Le~L~L~~c~~----l~~l~--l~~  103 (430)
                      .+++|++|+|++|.+..  +..+. ++++|++|+|++| .+++..+..+..+||+|++|++++|..    ...+.  ...
T Consensus       103 ~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~  182 (594)
T 2p1m_B          103 SYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT  182 (594)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred             hCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence            47788888888876543  12222 5788999999888 567777778888888999998887751    11110  113


Q ss_pred             CCCcCEEEcCCCcC-----CceEeEeeccceeEEEeecC-----------------------------------------
Q 014120          104 LNKLKEIKLDSNRC-----GLERVYINGVNVHSVDIKVY-----------------------------------------  137 (430)
Q Consensus       104 ~~~L~~L~l~~c~~-----~l~~l~i~~p~L~~L~l~~~-----------------------------------------  137 (430)
                      +++|++|+++.|..     .+..+...+++|++|++++.                                         
T Consensus       183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~  262 (594)
T 2p1m_B          183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS  262 (594)
T ss_dssp             CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred             CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence            45666666665530     01111112344444444321                                         


Q ss_pred             -------------CCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccc---cccccccce
Q 014120          138 -------------LEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI---NISSPRLKE  199 (430)
Q Consensus       138 -------------~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~~~~~~L~~  199 (430)
                                   ...  ....+..+++|+.|++++|.+++..+..++.++|+|+.|++.+|-.-..+   ....++|+.
T Consensus       263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~~L~~  342 (594)
T 2p1m_B          263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRE  342 (594)
T ss_dssp             TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCE
T ss_pred             cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCCCCCE
Confidence                         000  00011256899999999999988888888899999999999987321112   223678999


Q ss_pred             Eeccc--------cccccccc-----ccCCCcceEEeccee-e---E--EeccccccceeEEEeee-----cCCchHHHH
Q 014120          200 LVFER--------CEELVEFE-----LDTPNLSIFKCFNYV-E---S--FSSNALALSQTLLCFIS-----HPVDNEWYL  255 (430)
Q Consensus       200 L~l~~--------c~~L~~~~-----i~~p~L~~~~~~~~~-~---~--~~~~~~sL~~v~l~~~~-----~~~~~~~~~  255 (430)
                      |++.+        |..+++..     -..|+|+++...+.. .   .  .....+.++.+++.+..     .-.......
T Consensus       343 L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~  422 (594)
T 2p1m_B          343 LRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDI  422 (594)
T ss_dssp             EEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHH
T ss_pred             EEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhh
Confidence            99843        44444322     236888888553332 0   0  11124567777776321     001000012


Q ss_pred             HHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120          256 KFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE  333 (430)
Q Consensus       256 ~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~  333 (430)
                      .+..++.++.+++.|++.. ......+ ..+..    .+++|+.|.+..+. .  .  ...+..+.+.||+|++|.+.
T Consensus       423 ~~~~l~~~~~~L~~L~L~~-~l~~~~~-~~l~~----~~~~L~~L~L~~~~-i--~--~~~~~~l~~~~~~L~~L~L~  489 (594)
T 2p1m_B          423 GFGAIVEHCKDLRRLSLSG-LLTDKVF-EYIGT----YAKKMEMLSVAFAG-D--S--DLGMHHVLSGCDSLRKLEIR  489 (594)
T ss_dssp             HHHHHHHHCTTCCEEECCS-SCCHHHH-HHHHH----HCTTCCEEEEESCC-S--S--HHHHHHHHHHCTTCCEEEEE
T ss_pred             HHHHHHhhCCCccEEeecC-cccHHHH-HHHHH----hchhccEeeccCCC-C--c--HHHHHHHHhcCCCcCEEECc
Confidence            4566677888888887743 1111111 11111    24678888886653 1  1  12234555778888888884

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.46  E-value=6.4e-14  Score=151.45  Aligned_cols=291  Identities=14%  Similarity=0.051  Sum_probs=190.1

Q ss_pred             ccccCCccccCCCCccEEEEcCccCCC-------------------CCCCC--CCCCCCEEEEeeecCChHHHHHHhcCC
Q 014120           24 RIYNLPQIVFYLKSIYVLDFEFCKLEP-------------------PRSTV--TLFSLRKLCLSFVHVDDEVIRDMVAGC   82 (430)
Q Consensus        24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~-------------------~~~~~--~l~~L~~L~Ls~~~~~~~~l~~l~~~~   82 (430)
                      ....+|+.+.++++|++|+|+++.+..                   |..+.  ++++|++|+|++|.+... ++..+.++
T Consensus       436 ~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~-iP~~l~~L  514 (876)
T 4ecn_A          436 RITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQ-LPDFLYDL  514 (876)
T ss_dssp             EEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCS-CCGGGGGC
T ss_pred             cccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCcc-ChHHHhCC
Confidence            444489999999999999999986543                   55655  999999999999987543 35668899


Q ss_pred             CCccEEEeeeCCCCCc--c---------ccCCCCCcCEEEcCCCcCCceEeEe-----eccceeEEEeecCCCCceeccC
Q 014120           83 PLIEYININNCPGLKS--L---------QLLGLNKLKEIKLDSNRCGLERVYI-----NGVNVHSVDIKVYLEPCEVNVS  146 (430)
Q Consensus        83 p~Le~L~L~~c~~l~~--l---------~l~~~~~L~~L~l~~c~~~l~~l~i-----~~p~L~~L~l~~~~~~~~~~~~  146 (430)
                      ++|+.|+|++|..++.  +         .+..+++|+.|++++|.  +..+..     ..++|+.|++++..+.....+.
T Consensus       515 ~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~--L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp~~~  592 (876)
T 4ecn_A          515 PELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN--LEEFPASASLQKMVKLGLLDCVHNKVRHLEAFG  592 (876)
T ss_dssp             SSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC--CCBCCCHHHHTTCTTCCEEECTTSCCCBCCCCC
T ss_pred             CCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc--CCccCChhhhhcCCCCCEEECCCCCcccchhhc
Confidence            9999999999874443  1         23345799999999875  333322     4689999999883332112788


Q ss_pred             CCCcCceEEccCCCCChHHHHHHhcCCCc-cceecccccccccccccc-----ccccceEecccccccccc----c----
Q 014120          147 SCKNLTHLRLDGLSITDKWLYNQISELPF-LEYLALHYCMKLRSINIS-----SPRLKELVFERCEELVEF----E----  212 (430)
Q Consensus       147 ~l~~L~~L~L~~~~i~~~~l~~l~~~~p~-Le~L~L~~c~~l~~l~~~-----~~~L~~L~l~~c~~L~~~----~----  212 (430)
                      .+++|+.|++++|.++  .++..+.+++. |+.|+++++. +..++..     .++|+.|++++| .++..    .    
T Consensus       593 ~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~~L~Ls~N~-L~~lp~~~~~~~~~~L~~L~Ls~N-~l~g~ip~l~~~l~  668 (876)
T 4ecn_A          593 TNVKLTDLKLDYNQIE--EIPEDFCAFTDQVEGLGFSHNK-LKYIPNIFNAKSVYVMGSVDFSYN-KIGSEGRNISCSMD  668 (876)
T ss_dssp             TTSEESEEECCSSCCS--CCCTTSCEECTTCCEEECCSSC-CCSCCSCCCTTCSSCEEEEECCSS-CTTTTSSSCSSCTT
T ss_pred             CCCcceEEECcCCccc--cchHHHhhccccCCEEECcCCC-CCcCchhhhccccCCCCEEECcCC-cCCCccccchhhhc
Confidence            8999999999999985  56666778888 9999998776 4455542     234999999988 44321    1    


Q ss_pred             -ccCCCcceEEeccee----eEEe-ccccccceeEEEeeecCCchH-HHHHHHHHHhhCCCCceEeeeEeeccceecCcc
Q 014120          213 -LDTPNLSIFKCFNYV----ESFS-SNALALSQTLLCFISHPVDNE-WYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRE  285 (430)
Q Consensus       213 -i~~p~L~~~~~~~~~----~~~~-~~~~sL~~v~l~~~~~~~~~~-~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~  285 (430)
                       +..++|+.+...++.    |... ...+.++.+++.-+....... .+........++.+++.|++..+...  .+|..
T Consensus       669 ~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~--~lp~~  746 (876)
T 4ecn_A          669 DYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT--SLSDD  746 (876)
T ss_dssp             TCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCC--CCCGG
T ss_pred             cccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCc--cchHH
Confidence             234578888877664    2111 133456666653211110000 00000000123337887777766543  44443


Q ss_pred             cccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120          286 LREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE  333 (430)
Q Consensus       286 l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~  333 (430)
                      ..   ...+++|+.|.+..+.      +.++ +.-+..+|+|+.|.+.
T Consensus       747 l~---~~~l~~L~~L~Ls~N~------L~~l-p~~l~~L~~L~~L~Ls  784 (876)
T 4ecn_A          747 FR---ATTLPYLSNMDVSYNC------FSSF-PTQPLNSSQLKAFGIR  784 (876)
T ss_dssp             GS---TTTCTTCCEEECCSSC------CSSC-CCGGGGCTTCCEEECC
T ss_pred             hh---hccCCCcCEEEeCCCC------CCcc-chhhhcCCCCCEEECC
Confidence            22   1145788888887763      2222 3335688999999884

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.46  E-value=4.2e-14  Score=142.57  Aligned_cols=317  Identities=15%  Similarity=0.109  Sum_probs=199.2

Q ss_pred             HHHhCCceEEEEEecCC---ccccCCccccCCCCccEEEEcCccCCC--C-CCCCCCC----CCCEEEEeeecCCh---H
Q 014120            7 YAFASNVKELKLDVGCC---RIYNLPQIVFYLKSIYVLDFEFCKLEP--P-RSTVTLF----SLRKLCLSFVHVDD---E   73 (430)
Q Consensus         7 ~a~~~~v~~L~L~~~~~---~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~-~~~~~l~----~L~~L~Ls~~~~~~---~   73 (430)
                      +..-.+++.++|..+.-   ....+|..+..+++|++|+|+++.+..  + .....++    +|++|+|++|.+++   .
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~  103 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCG  103 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHH
Confidence            34456788888765431   122567777778999999999986543  1 1122344    79999999998865   3


Q ss_pred             HHHHHhcCCCCccEEEeeeCCCCCccc--------cCCCCCcCEEEcCCCcCCceEe--------EeeccceeEEEeecC
Q 014120           74 VIRDMVAGCPLIEYININNCPGLKSLQ--------LLGLNKLKEIKLDSNRCGLERV--------YINGVNVHSVDIKVY  137 (430)
Q Consensus        74 ~l~~l~~~~p~Le~L~L~~c~~l~~l~--------l~~~~~L~~L~l~~c~~~l~~l--------~i~~p~L~~L~l~~~  137 (430)
                      .+...+..+++|++|++++|. +....        ....++|++|++++|.  +...        --.+++|++|++++.
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n  180 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS--LSAASCEPLASVLRAKPDFKELTVSNN  180 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC--CBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC--CCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence            566778889999999999876 32211        1224579999998875  2211        112589999999883


Q ss_pred             CCC--ceeccC-----CCCcCceEEccCCCCChHH---HHHHhcCCCccceecccccccccc-----cc----ccccccc
Q 014120          138 LEP--CEVNVS-----SCKNLTHLRLDGLSITDKW---LYNQISELPFLEYLALHYCMKLRS-----IN----ISSPRLK  198 (430)
Q Consensus       138 ~~~--~~~~~~-----~l~~L~~L~L~~~~i~~~~---l~~l~~~~p~Le~L~L~~c~~l~~-----l~----~~~~~L~  198 (430)
                      .+.  ....+.     ..++|+.|++++|.+++..   ++..+..+++|+.|++++|. +..     +.    ...++|+
T Consensus       181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~~~~~~L~  259 (461)
T 1z7x_W          181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLLHPSSRLR  259 (461)
T ss_dssp             BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCC
T ss_pred             CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHhcCCCCce
Confidence            322  011111     3568999999999997643   56667789999999998774 221     11    1257899


Q ss_pred             eEecccccccccc-----c---ccCCCcceEEeccee-e-----EEe----ccccccceeEEEeeecCCchHHHHHHHHH
Q 014120          199 ELVFERCEELVEF-----E---LDTPNLSIFKCFNYV-E-----SFS----SNALALSQTLLCFISHPVDNEWYLKFIKL  260 (430)
Q Consensus       199 ~L~l~~c~~L~~~-----~---i~~p~L~~~~~~~~~-~-----~~~----~~~~sL~~v~l~~~~~~~~~~~~~~l~~~  260 (430)
                      +|++++| .++..     .   -..++|+.+...++. .     .+.    .....++.+++.-...  .......+...
T Consensus       260 ~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l--~~~~~~~l~~~  336 (461)
T 1z7x_W          260 TLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF--TAACCSHFSSV  336 (461)
T ss_dssp             EEECTTS-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC--BGGGHHHHHHH
T ss_pred             EEECcCC-CCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC--chHHHHHHHHH
Confidence            9999998 66642     1   135889999887764 0     000    0113566666532111  11111356777


Q ss_pred             HhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120          261 LARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE  333 (430)
Q Consensus       261 l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~  333 (430)
                      +....+++.|++..+....... ..+......+.++|++|.+..+. ..... ...++..+..+|+|++|.+.
T Consensus       337 l~~~~~L~~L~Ls~n~i~~~~~-~~l~~~l~~~~~~L~~L~L~~n~-i~~~~-~~~l~~~l~~~~~L~~L~l~  406 (461)
T 1z7x_W          337 LAQNRFLLELQISNNRLEDAGV-RELCQGLGQPGSVLRVLWLADCD-VSDSS-CSSLAATLLANHSLRELDLS  406 (461)
T ss_dssp             HHHCSSCCEEECCSSBCHHHHH-HHHHHHHTSTTCCCCEEECTTSC-CCHHH-HHHHHHHHHHCCCCCEEECC
T ss_pred             HhhCCCccEEEccCCccccccH-HHHHHHHcCCCCceEEEECCCCC-CChhh-HHHHHHHHHhCCCccEEECC
Confidence            8888999999987765432211 11111111124789999998774 22222 23446677889999999994

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.45  E-value=1.4e-14  Score=152.54  Aligned_cols=172  Identities=19%  Similarity=0.197  Sum_probs=118.7

Q ss_pred             CCCCCCCCCCCEEEEeeecCChH----------------HHHHHhc--CCCCccEEEeeeCCCCCcc--ccCCCCCcCEE
Q 014120           51 PRSTVTLFSLRKLCLSFVHVDDE----------------VIRDMVA--GCPLIEYININNCPGLKSL--QLLGLNKLKEI  110 (430)
Q Consensus        51 ~~~~~~l~~L~~L~Ls~~~~~~~----------------~l~~l~~--~~p~Le~L~L~~c~~l~~l--~l~~~~~L~~L  110 (430)
                      |..+.++++|++|+|++|.+++.                .++..+.  ++++|++|++++|.....+  .+.++++|++|
T Consensus       199 p~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  278 (636)
T 4eco_A          199 SKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI  278 (636)
T ss_dssp             CGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEE
T ss_pred             CHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEE
Confidence            34577899999999999998762                1455666  8999999999998754433  35678999999


Q ss_pred             EcCCCcCCceE--eE--ee-------ccceeEEEeecCCCC-cee--ccCCCCcCceEEccCCCCChHHHHHHhcCCCcc
Q 014120          111 KLDSNRCGLER--VY--IN-------GVNVHSVDIKVYLEP-CEV--NVSSCKNLTHLRLDGLSITDKWLYNQISELPFL  176 (430)
Q Consensus       111 ~l~~c~~~l~~--l~--i~-------~p~L~~L~l~~~~~~-~~~--~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~L  176 (430)
                      ++++|. .+..  +.  +.       +++|++|++++.... .+.  .++++++|+.|++++|.+++ .++ .+.++++|
T Consensus       279 ~Ls~n~-~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g-~ip-~~~~l~~L  355 (636)
T 4eco_A          279 NVACNR-GISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEG-KLP-AFGSEIKL  355 (636)
T ss_dssp             ECTTCT-TSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEE-ECC-CCEEEEEE
T ss_pred             ECcCCC-CCccccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCcc-chh-hhCCCCCC
Confidence            999874 2432  21  11       389999999883322 234  67889999999999998852 344 56778889


Q ss_pred             ceecccccccccccccc---ccc-cceEeccccccccccc--cc---CCCcceEEeccee
Q 014120          177 EYLALHYCMKLRSINIS---SPR-LKELVFERCEELVEFE--LD---TPNLSIFKCFNYV  227 (430)
Q Consensus       177 e~L~L~~c~~l~~l~~~---~~~-L~~L~l~~c~~L~~~~--i~---~p~L~~~~~~~~~  227 (430)
                      +.|+++++.. ..++..   .++ |+.|+++++ .++.+.  +.   .++|+.+.+.++.
T Consensus       356 ~~L~L~~N~l-~~lp~~l~~l~~~L~~L~Ls~N-~l~~lp~~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          356 ASLNLAYNQI-TEIPANFCGFTEQVENLSFAHN-KLKYIPNIFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             SEEECCSSEE-EECCTTSEEECTTCCEEECCSS-CCSSCCSCCCTTCSSCEEEEECCSSC
T ss_pred             CEEECCCCcc-ccccHhhhhhcccCcEEEccCC-cCcccchhhhhcccCccCEEECcCCc
Confidence            9999876643 344432   345 888888887 455443  22   2356777665543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.45  E-value=8.1e-13  Score=130.44  Aligned_cols=121  Identities=18%  Similarity=0.214  Sum_probs=81.9

Q ss_pred             CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      ..+++|+|  .++....+|+ .+..+++|++|+++++.+..  |..+.++++|++|+|++|.++.- ...++.++++|++
T Consensus        69 ~~L~~L~L--~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~  145 (390)
T 3o6n_A           69 RQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTT  145 (390)
T ss_dssp             CCCSEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             ccCcEEEC--CCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCcC-CHHHhcCCCCCcE
Confidence            45666665  4455666665 56679999999999987654  45678899999999999988532 1234578899999


Q ss_pred             EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEe-eccceeEEEeec
Q 014120           88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKV  136 (430)
Q Consensus        88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i-~~p~L~~L~l~~  136 (430)
                      |++++|..  +..-.+.++++|++|++++|.  +..+.+ ..++|+.+++++
T Consensus       146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~l~~L~~L~l~~  195 (390)
T 3o6n_A          146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSY  195 (390)
T ss_dssp             EECCSSCCCBCCTTTTSSCTTCCEEECCSSC--CSBCCGGGCTTCSEEECCS
T ss_pred             EECCCCccCccChhhccCCCCCCEEECCCCc--CCccccccccccceeeccc
Confidence            99998753  222235567888999888764  222222 245566665555

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.45  E-value=1e-13  Score=134.04  Aligned_cols=186  Identities=20%  Similarity=0.290  Sum_probs=141.1

Q ss_pred             CCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCCCcCEEE
Q 014120           35 LKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIK  111 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~~L~~L~  111 (430)
                      ..+++.|+|+++.+.. |..+.++++|++|+|++|.++  .++..+.++++|++|++++|.. +.+  .+.++++|++|+
T Consensus        80 ~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l-~~lp~~l~~l~~L~~L~  156 (328)
T 4fcg_A           80 QPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPL-RALPASIASLNRLRELS  156 (328)
T ss_dssp             STTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCC-CCCCGGGGGCTTCCEEE
T ss_pred             ccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCcc-ccCcHHHhcCcCCCEEE
Confidence            4789999999987654 567788999999999999986  3455678899999999999853 233  356789999999


Q ss_pred             cCCCcCCceEeE------------eeccceeEEEeecCCC-CceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccce
Q 014120          112 LDSNRCGLERVY------------INGVNVHSVDIKVYLE-PCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY  178 (430)
Q Consensus       112 l~~c~~~l~~l~------------i~~p~L~~L~l~~~~~-~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~  178 (430)
                      +++|. ....+.            -..++|++|++++..+ ..+..+.++++|+.|++++|.+++  ++..+.++++|+.
T Consensus       157 L~~n~-~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~--l~~~l~~l~~L~~  233 (328)
T 4fcg_A          157 IRACP-ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEE  233 (328)
T ss_dssp             EEEET-TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC--CCGGGGGCTTCCE
T ss_pred             CCCCC-CccccChhHhhccchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc--CchhhccCCCCCE
Confidence            99886 333221            1378999999988322 223568889999999999999853  4445788999999


Q ss_pred             ecccccccccccccc---ccccceEeccccccccccc---ccCCCcceEEecce
Q 014120          179 LALHYCMKLRSINIS---SPRLKELVFERCEELVEFE---LDTPNLSIFKCFNY  226 (430)
Q Consensus       179 L~L~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~  226 (430)
                      |++++|.....++..   .++|+.|++++|..+..+.   -..++|+.+...++
T Consensus       234 L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC  287 (328)
T ss_dssp             EECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTC
T ss_pred             EECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCC
Confidence            999998877766653   5789999999986555443   24567777766654

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.44  E-value=3.7e-13  Score=135.67  Aligned_cols=199  Identities=17%  Similarity=0.066  Sum_probs=115.0

Q ss_pred             ecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC--
Q 014120           20 VGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG--   95 (430)
Q Consensus        20 ~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~--   95 (430)
                      ........+|..+.  +++++|+|+++.+..  +..+.++++|++|+|++|.++... ...+.++++|++|+|++|..  
T Consensus        61 c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~-~~~~~~l~~L~~L~L~~n~l~~  137 (452)
T 3zyi_A           61 CTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE-VGAFNGLASLNTLELFDNWLTV  137 (452)
T ss_dssp             CCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSCCSB
T ss_pred             ECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcC-hhhccCcccCCEEECCCCcCCc
Confidence            33344556665543  577778887766543  456777788888888877764321 23456777788888777642  


Q ss_pred             CCccccCCCCCcCEEEcCCCcCCceEeEe----eccceeEEEeec-CCCC--ceeccCCCCcCceEEccCCCCChHHHHH
Q 014120           96 LKSLQLLGLNKLKEIKLDSNRCGLERVYI----NGVNVHSVDIKV-YLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYN  168 (430)
Q Consensus        96 l~~l~l~~~~~L~~L~l~~c~~~l~~l~i----~~p~L~~L~l~~-~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~  168 (430)
                      +..-.+.++++|++|++++|.  +..+..    ..++|+.|++++ ....  ....+.++++|+.|++++|.+++  ++ 
T Consensus       138 ~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--~~-  212 (452)
T 3zyi_A          138 IPSGAFEYLSKLRELWLRNNP--IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD--MP-  212 (452)
T ss_dssp             CCTTTSSSCTTCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS--CC-
T ss_pred             cChhhhcccCCCCEEECCCCC--cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc--cc-
Confidence            222224456777777777653  333321    356777777765 2221  12245667777777777777643  22 


Q ss_pred             HhcCCCccceeccccccccccccc---cccccceEeccccccccccc---c-cCCCcceEEeccee
Q 014120          169 QISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV  227 (430)
Q Consensus       169 l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~  227 (430)
                      .+..+++|+.|+++++..-...+.   ..++|+.|+++++ .++.+.   + ..++|+.+...++.
T Consensus       213 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~  277 (452)
T 3zyi_A          213 NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNS-QVSLIERNAFDGLASLVELNLAHNN  277 (452)
T ss_dssp             CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCC-cCceECHHHhcCCCCCCEEECCCCc
Confidence            245667777777765542221111   2456777777766 454432   1 34667777666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.44  E-value=2.5e-13  Score=147.56  Aligned_cols=164  Identities=16%  Similarity=0.110  Sum_probs=91.4

Q ss_pred             EEEEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120           16 LKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (430)
Q Consensus        16 L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c   93 (430)
                      ...+.+......+|.   -.+++++|+|+++.+..  +..+.++++|++|+|++|......-+..+.++++|++|+|++|
T Consensus         7 ~~~dcs~~~L~~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            7 RIAFYRFCNLTQVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEEESCCCSSCCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             eEEEccCCCCCCCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            344555555666665   34677777777765543  4566777777777777774321111234567777777777776


Q ss_pred             CC--CCccccCCCCCcCEEEcCCCc-CC--ceEe-EeeccceeEEEeecCCCC---ceeccCCCCcCceEEccCCCCCh-
Q 014120           94 PG--LKSLQLLGLNKLKEIKLDSNR-CG--LERV-YINGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLRLDGLSITD-  163 (430)
Q Consensus        94 ~~--l~~l~l~~~~~L~~L~l~~c~-~~--l~~l-~i~~p~L~~L~l~~~~~~---~~~~~~~l~~L~~L~L~~~~i~~-  163 (430)
                      ..  +..-.+.++++|++|+++.|. ..  +... .-..++|++|++++....   ....++++++|++|++++|.+++ 
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            42  112234566777777777764 11  1110 123567777777763221   12346677777777777776643 


Q ss_pred             --HHHHHHhcCCCccceeccccc
Q 014120          164 --KWLYNQISELPFLEYLALHYC  184 (430)
Q Consensus       164 --~~l~~l~~~~p~Le~L~L~~c  184 (430)
                        ..+..+..  ++|+.|+++++
T Consensus       164 ~~~~l~~l~~--~~L~~L~L~~n  184 (844)
T 3j0a_A          164 CEHELEPLQG--KTLSFFSLAAN  184 (844)
T ss_dssp             CSGGGHHHHH--CSSCCCEECCS
T ss_pred             CHHHcccccC--CccceEECCCC
Confidence              22222211  45555555544

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.43  E-value=6.5e-13  Score=134.19  Aligned_cols=178  Identities=19%  Similarity=0.201  Sum_probs=112.7

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L   90 (430)
                      ..++.|+|.  .+....+|  +..+++|++|+++++.+... .+.++++|++|++++|.+++-  +  +..+++|++|++
T Consensus        64 ~~L~~L~Ls--~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~l~~L~~L~L~~N~l~~l--~--~~~l~~L~~L~l  134 (457)
T 3bz5_A           64 TGLTKLICT--SNNITTLD--LSQNTNLTYLACDSNKLTNL-DVTPLTKLTYLNCDTNKLTKL--D--VSQNPLLTYLNC  134 (457)
T ss_dssp             TTCSEEECC--SSCCSCCC--CTTCTTCSEEECCSSCCSCC-CCTTCTTCCEEECCSSCCSCC--C--CTTCTTCCEEEC
T ss_pred             CCCCEEEcc--CCcCCeEc--cccCCCCCEEECcCCCCcee-ecCCCCcCCEEECCCCcCCee--c--CCCCCcCCEEEC
Confidence            455665554  34455565  66788999999998876653 377888999999998887553  2  678888888888


Q ss_pred             eeCCCCCccccCCCCCcCEEEcCCCcCCceEeEe-eccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120           91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (430)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i-~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l  169 (430)
                      ++|. ++.+.+.++++|+.|+++.|. .+..+.+ ..++|++|++++.... ...+..+++|+.|++++|.+++.    -
T Consensus       135 ~~N~-l~~l~l~~l~~L~~L~l~~n~-~~~~~~~~~l~~L~~L~ls~n~l~-~l~l~~l~~L~~L~l~~N~l~~~----~  207 (457)
T 3bz5_A          135 ARNT-LTEIDVSHNTQLTELDCHLNK-KITKLDVTPQTQLTTLDCSFNKIT-ELDVSQNKLLNRLNCDTNNITKL----D  207 (457)
T ss_dssp             TTSC-CSCCCCTTCTTCCEEECTTCS-CCCCCCCTTCTTCCEEECCSSCCC-CCCCTTCTTCCEEECCSSCCSCC----C
T ss_pred             CCCc-cceeccccCCcCCEEECCCCC-cccccccccCCcCCEEECCCCccc-eeccccCCCCCEEECcCCcCCee----c
Confidence            8764 444556677788888887774 3333322 2466777777663322 12355666677777766666432    1


Q ss_pred             hcCCCccceecccccccccccccc-ccccceEecccc
Q 014120          170 ISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERC  205 (430)
Q Consensus       170 ~~~~p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c  205 (430)
                      +..++.|+.|+++++. +..++.. .++|+.|+++++
T Consensus       208 l~~l~~L~~L~Ls~N~-l~~ip~~~l~~L~~L~l~~N  243 (457)
T 3bz5_A          208 LNQNIQLTFLDCSSNK-LTEIDVTPLTQLTYFDCSVN  243 (457)
T ss_dssp             CTTCTTCSEEECCSSC-CSCCCCTTCTTCSEEECCSS
T ss_pred             cccCCCCCEEECcCCc-ccccCccccCCCCEEEeeCC
Confidence            4556666666665543 2333332 355666666555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.43  E-value=3.7e-13  Score=129.81  Aligned_cols=272  Identities=14%  Similarity=0.076  Sum_probs=121.1

Q ss_pred             CccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc
Q 014120           23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ  100 (430)
Q Consensus        23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~  100 (430)
                      .....+|..+.  +++++|+++++.+..  +..+.++++|++|+|++|.++... +..+.++++|++|++++|. ++.+.
T Consensus        41 ~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~l~  116 (330)
T 1xku_A           41 LGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS-PGAFAPLVKLERLYLSKNQ-LKELP  116 (330)
T ss_dssp             SCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC-TTTTTTCTTCCEEECCSSC-CSBCC
T ss_pred             CCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC-HHHhcCCCCCCEEECCCCc-CCccC
Confidence            34445554432  456666666655433  234566666666666666553221 2234556666666666653 33332


Q ss_pred             cCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChH-HHHHHhcCCCcccee
Q 014120          101 LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK-WLYNQISELPFLEYL  179 (430)
Q Consensus       101 l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~-~l~~l~~~~p~Le~L  179 (430)
                      ..-.++|++|++++|.  +..+.                  ...+.++++|+.|++++|.+... ..+..+.++++|+.|
T Consensus       117 ~~~~~~L~~L~l~~n~--l~~~~------------------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L  176 (330)
T 1xku_A          117 EKMPKTLQELRVHENE--ITKVR------------------KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI  176 (330)
T ss_dssp             SSCCTTCCEEECCSSC--CCBBC------------------HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEE
T ss_pred             hhhcccccEEECCCCc--ccccC------------------HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEE
Confidence            2223556666665543  11110                  12234455555555555544321 112233445555555


Q ss_pred             cccccccccccccc-ccccceEeccccccccccc---c-cCCCcceEEeccee-e-EE---eccccccceeEEEeeecCC
Q 014120          180 ALHYCMKLRSINIS-SPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV-E-SF---SSNALALSQTLLCFISHPV  249 (430)
Q Consensus       180 ~L~~c~~l~~l~~~-~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~-~-~~---~~~~~sL~~v~l~~~~~~~  249 (430)
                      +++++. +..++.. .++|+.|+++++ .++.+.   + ..++|+.+...++. . ..   ......++.+++.-+... 
T Consensus       177 ~l~~n~-l~~l~~~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-  253 (330)
T 1xku_A          177 RIADTN-ITTIPQGLPPSLTELHLDGN-KITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-  253 (330)
T ss_dssp             ECCSSC-CCSCCSSCCTTCSEEECTTS-CCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred             ECCCCc-cccCCccccccCCEEECCCC-cCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence            554332 2222221 244555555554 333221   1 22444444444332 0 00   011223333333211000 


Q ss_pred             chHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccc--cCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCC
Q 014120          250 DNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREI--LCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHA  327 (430)
Q Consensus       250 ~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~--~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~L  327 (430)
                            .+...+..+.+++.|++..+...  .++......  ....+..++.|.+..++ .   ..+.+.+.-+.+++++
T Consensus       254 ------~lp~~l~~l~~L~~L~l~~N~i~--~~~~~~f~~~~~~~~~~~l~~l~l~~N~-~---~~~~i~~~~f~~~~~l  321 (330)
T 1xku_A          254 ------KVPGGLADHKYIQVVYLHNNNIS--AIGSNDFCPPGYNTKKASYSGVSLFSNP-V---QYWEIQPSTFRCVYVR  321 (330)
T ss_dssp             ------SCCTTTTTCSSCCEEECCSSCCC--CCCTTSSSCSSCCTTSCCCSEEECCSSS-S---CGGGSCGGGGTTCCCG
T ss_pred             ------cCChhhccCCCcCEEECCCCcCC--ccChhhcCCcccccccccccceEeecCc-c---cccccCccccccccce
Confidence                  11122455677777776655433  222221111  11124667777777664 1   1223334456777788


Q ss_pred             ceeeEe
Q 014120          328 ETLSIE  333 (430)
Q Consensus       328 e~L~i~  333 (430)
                      +.+.+.
T Consensus       322 ~~l~L~  327 (330)
T 1xku_A          322 AAVQLG  327 (330)
T ss_dssp             GGEEC-
T ss_pred             eEEEec
Confidence            877763

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.42  E-value=1.1e-13  Score=143.90  Aligned_cols=147  Identities=19%  Similarity=0.203  Sum_probs=82.4

Q ss_pred             CCCCccEEEEcCccCCC------CCCCCCCCCCCEEEEeeec--CChHHHHHHhcCCCCccEEEeeeCCCCCccc--cCC
Q 014120           34 YLKSIYVLDFEFCKLEP------PRSTVTLFSLRKLCLSFVH--VDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLG  103 (430)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~------~~~~~~l~~L~~L~Ls~~~--~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~--l~~  103 (430)
                      ++++|++|+|++|.+..      +.....+++|++|+|++|.  +++..+..++.+||+|+.|++++|..+..+.  +..
T Consensus       154 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~  233 (594)
T 2p1m_B          154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQR  233 (594)
T ss_dssp             HCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHH
T ss_pred             hCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhc
Confidence            46677777777665322      1122367788888888775  5667777777778888888888774322110  112


Q ss_pred             CCCcCEEEcCCCc------------------CCceEe--------------EeeccceeEEEeecCCCC---ceeccCCC
Q 014120          104 LNKLKEIKLDSNR------------------CGLERV--------------YINGVNVHSVDIKVYLEP---CEVNVSSC  148 (430)
Q Consensus       104 ~~~L~~L~l~~c~------------------~~l~~l--------------~i~~p~L~~L~l~~~~~~---~~~~~~~l  148 (430)
                      +++|++|++..|.                  ..+..+              ...+++|++|++++....   ....+.++
T Consensus       234 ~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~  313 (594)
T 2p1m_B          234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQC  313 (594)
T ss_dssp             CTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTC
T ss_pred             CCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcC
Confidence            3444444432221                  011111              013467777777662222   01113466


Q ss_pred             CcCceEEccCCCCChHHHHHHhcCCCccceecc
Q 014120          149 KNLTHLRLDGLSITDKWLYNQISELPFLEYLAL  181 (430)
Q Consensus       149 ~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L  181 (430)
                      ++|+.|++.++ +++..++.+...+++|+.|++
T Consensus       314 ~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L  345 (594)
T 2p1m_B          314 PKLQRLWVLDY-IEDAGLEVLASTCKDLRELRV  345 (594)
T ss_dssp             TTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEE
T ss_pred             CCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEE
Confidence            77777777766 545555666666777777766

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.42  E-value=5.3e-13  Score=130.05  Aligned_cols=263  Identities=13%  Similarity=0.112  Sum_probs=160.8

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~   95 (430)
                      .+.+++....+|..++  ++|++|+++++.+..  +..+.++++|++|+|++|.+++.. +..+.++++|++|++++|..
T Consensus        36 c~~~~~~l~~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~Ls~n~l  112 (353)
T 2z80_A           36 CKGSSGSLNSIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE-EDSFSSLGSLEHLDLSYNYL  112 (353)
T ss_dssp             EECCSTTCSSCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC-TTTTTTCTTCCEEECCSSCC
T ss_pred             eeCCCCCccccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC-HhhcCCCCCCCEEECCCCcC
Confidence            3444456778887665  489999999987654  346888999999999999875421 23467889999999998743


Q ss_pred             --CCccccCCCCCcCEEEcCCCc-CCceE--eEeeccceeEEEeecC-CCC--ceeccCCCCcCceEEccCCCCChHHHH
Q 014120           96 --LKSLQLLGLNKLKEIKLDSNR-CGLER--VYINGVNVHSVDIKVY-LEP--CEVNVSSCKNLTHLRLDGLSITDKWLY  167 (430)
Q Consensus        96 --l~~l~l~~~~~L~~L~l~~c~-~~l~~--l~i~~p~L~~L~l~~~-~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~  167 (430)
                        +..-.+.++++|++|++++|. ..+..  ..-..++|++|++++. ...  ....+.++++|+.|++++|.+++ ..+
T Consensus       113 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~  191 (353)
T 2z80_A          113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQS-YEP  191 (353)
T ss_dssp             SSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE-ECT
T ss_pred             CcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCc-cCH
Confidence              222225677899999998875 22222  1123678888888773 222  12356778888888888888753 224


Q ss_pred             HHhcCCCccceeccccccccccccc----cccccceEecccccccccccccCCCcceEEecceeeEEeccccccceeEEE
Q 014120          168 NQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFELDTPNLSIFKCFNYVESFSSNALALSQTLLC  243 (430)
Q Consensus       168 ~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~i~~p~L~~~~~~~~~~~~~~~~~sL~~v~l~  243 (430)
                      ..+.++++|+.|+++++. +..++.    ..++|+.|+++++ .++.+....  +...          .....+...++.
T Consensus       192 ~~l~~l~~L~~L~l~~n~-l~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~--l~~~----------~~~~~l~~l~L~  257 (353)
T 2z80_A          192 KSLKSIQNVSHLILHMKQ-HILLLEIFVDVTSSVECLELRDT-DLDTFHFSE--LSTG----------ETNSLIKKFTFR  257 (353)
T ss_dssp             TTTTTCSEEEEEEEECSC-STTHHHHHHHHTTTEEEEEEESC-BCTTCCCC------------------CCCCCCEEEEE
T ss_pred             HHHhccccCCeecCCCCc-cccchhhhhhhcccccEEECCCC-ccccccccc--cccc----------cccchhhccccc
Confidence            456678888888887665 333332    2567888888877 444332111  0000          001122222221


Q ss_pred             eeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEe
Q 014120          244 FISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLS  306 (430)
Q Consensus       244 ~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~  306 (430)
                      -..  -.......+.+.+.++.+++.|++..+...  .+|...    ...+++|+.|.+..++
T Consensus       258 ~~~--l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~--~i~~~~----~~~l~~L~~L~L~~N~  312 (353)
T 2z80_A          258 NVK--ITDESLFQVMKLLNQISGLLELEFSRNQLK--SVPDGI----FDRLTSLQKIWLHTNP  312 (353)
T ss_dssp             SCB--CCHHHHHHHHHHHHTCTTCCEEECCSSCCC--CCCTTT----TTTCTTCCEEECCSSC
T ss_pred             ccc--ccCcchhhhHHHHhcccCCCEEECCCCCCC--ccCHHH----HhcCCCCCEEEeeCCC
Confidence            110  011112355667788899998887766543  344322    1235778888887764

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.42  E-value=4.9e-13  Score=137.05  Aligned_cols=140  Identities=14%  Similarity=0.117  Sum_probs=101.1

Q ss_pred             EEEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        17 ~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      .|+++++....+|..++  ++|++|+++++.+..  +..+.++++|++|+|++|.+++. .+..+.++++|++|++++|.
T Consensus         4 ~l~ls~n~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~N~   80 (520)
T 2z7x_B            4 LVDRSKNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYL-DISVFKFNQELEYLDLSHNK   80 (520)
T ss_dssp             EEECTTSCCSSCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEE-EGGGGTTCTTCCEEECCSSC
T ss_pred             eEecCCCCccccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCc-ChHHhhcccCCCEEecCCCc
Confidence            45666677788998776  899999999987654  24678899999999999988643 13457889999999999974


Q ss_pred             CCCccccCCCCCcCEEEcCCCc-CCce--EeEeeccceeEEEeecCCCCceeccCCCCcC--ceEEccCCCC
Q 014120           95 GLKSLQLLGLNKLKEIKLDSNR-CGLE--RVYINGVNVHSVDIKVYLEPCEVNVSSCKNL--THLRLDGLSI  161 (430)
Q Consensus        95 ~l~~l~l~~~~~L~~L~l~~c~-~~l~--~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L--~~L~L~~~~i  161 (430)
                       ++.+....+++|++|++++|. ..+.  ...-..++|++|++++..+. ...+..+++|  +.|++++|.+
T Consensus        81 -l~~lp~~~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~L~L~~L~l~~n~l  150 (520)
T 2z7x_B           81 -LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-KSSVLPIAHLNISKVLLVLGET  150 (520)
T ss_dssp             -CCEEECCCCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCC-GGGGGGGTTSCEEEEEEEECTT
T ss_pred             -eeecCccccCCccEEeccCCccccccchhhhccCCcceEEEecCcccc-hhhccccccceeeEEEeecccc
Confidence             445544467899999999875 1111  11123678888888874333 2456667777  8888888776

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.41  E-value=5.6e-13  Score=133.90  Aligned_cols=199  Identities=18%  Similarity=0.140  Sum_probs=135.6

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~   95 (430)
                      ++........+|..+.  ++++.|+|+++.+..  +..+.++++|++|+|++|.++... ...+.++++|++|+|++|. 
T Consensus        48 v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~-~~~~~~l~~L~~L~L~~n~-  123 (440)
T 3zyj_A           48 VICVRKNLREVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE-IGAFNGLANLNTLELFDNR-  123 (440)
T ss_dssp             EECCSCCCSSCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEEC-GGGGTTCSSCCEEECCSSC-
T ss_pred             EEeCCCCcCcCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccC-hhhccCCccCCEEECCCCc-
Confidence            3344455677887654  678999999887654  467888999999999999875421 2356788999999998874 


Q ss_pred             CCcc---ccCCCCCcCEEEcCCCcCCceEeEe----eccceeEEEeec-CCCC--ceeccCCCCcCceEEccCCCCChHH
Q 014120           96 LKSL---QLLGLNKLKEIKLDSNRCGLERVYI----NGVNVHSVDIKV-YLEP--CEVNVSSCKNLTHLRLDGLSITDKW  165 (430)
Q Consensus        96 l~~l---~l~~~~~L~~L~l~~c~~~l~~l~i----~~p~L~~L~l~~-~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~  165 (430)
                      ++.+   .+.++++|++|++++|.  +..+..    .+++|++|++++ ....  ....+.++++|+.|++++|.+++  
T Consensus       124 l~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~--  199 (440)
T 3zyj_A          124 LTTIPNGAFVYLSKLKELWLRNNP--IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE--  199 (440)
T ss_dssp             CSSCCTTTSCSCSSCCEEECCSCC--CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS--
T ss_pred             CCeeCHhHhhccccCceeeCCCCc--ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc--
Confidence            3332   35567889999998764  433321    367888888876 2222  12356788889999998888853  


Q ss_pred             HHHHhcCCCccceecccccccccccc-c---cccccceEeccccccccccc----ccCCCcceEEeccee
Q 014120          166 LYNQISELPFLEYLALHYCMKLRSIN-I---SSPRLKELVFERCEELVEFE----LDTPNLSIFKCFNYV  227 (430)
Q Consensus       166 l~~l~~~~p~Le~L~L~~c~~l~~l~-~---~~~~L~~L~l~~c~~L~~~~----i~~p~L~~~~~~~~~  227 (430)
                      ++. +..+++|+.|+++++. +..+. .   ..++|+.|+++++ .++.+.    -..++|+.+...++.
T Consensus       200 ~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~  266 (440)
T 3zyj_A          200 IPN-LTPLIKLDELDLSGNH-LSAIRPGSFQGLMHLQKLWMIQS-QIQVIERNAFDNLQSLVEINLAHNN  266 (440)
T ss_dssp             CCC-CTTCSSCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTC-CCCEECTTSSTTCTTCCEEECTTSC
T ss_pred             ccc-cCCCcccCEEECCCCc-cCccChhhhccCccCCEEECCCC-ceeEEChhhhcCCCCCCEEECCCCC
Confidence            332 5678888888888764 33332 1   2567888888887 565543    234788888877765

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.40  E-value=1.9e-13  Score=137.63  Aligned_cols=191  Identities=18%  Similarity=0.201  Sum_probs=120.6

Q ss_pred             ccCCCCccEEEEcCccCCC------CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCC----CccEEEeeeCCCCCc---
Q 014120           32 VFYLKSIYVLDFEFCKLEP------PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCP----LIEYININNCPGLKS---   98 (430)
Q Consensus        32 l~~~~~L~~L~Ls~~~~~~------~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p----~Le~L~L~~c~~l~~---   98 (430)
                      +..+++|++|++++|.+..      +..+..+++|++|+|++|.+++..+..+...++    +|++|++++|. ++.   
T Consensus        24 ~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~  102 (461)
T 1z7x_W           24 LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGC  102 (461)
T ss_dssp             HHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGH
T ss_pred             HhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCC-CCHHHH
Confidence            4457889999999987653      234567889999999999887776667766666    69999998875 331   


Q ss_pred             ----cccCCCCCcCEEEcCCCcCCceEe-----Ee----eccceeEEEeecCCCCc------eeccCCCCcCceEEccCC
Q 014120           99 ----LQLLGLNKLKEIKLDSNRCGLERV-----YI----NGVNVHSVDIKVYLEPC------EVNVSSCKNLTHLRLDGL  159 (430)
Q Consensus        99 ----l~l~~~~~L~~L~l~~c~~~l~~l-----~i----~~p~L~~L~l~~~~~~~------~~~~~~l~~L~~L~L~~~  159 (430)
                          -.+.++++|++|++++|.  +...     .-    ..++|++|++++..+..      ...+..+++|+.|++++|
T Consensus       103 ~~l~~~l~~~~~L~~L~Ls~n~--i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n  180 (461)
T 1z7x_W          103 GVLSSTLRTLPTLQELHLSDNL--LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNN  180 (461)
T ss_dssp             HHHHHHTTSCTTCCEEECCSSB--CHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHHccCCceeEEECCCCc--CchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence                235567889999998875  2211     00    12468888877632220      122345678888888888


Q ss_pred             CCChHHHHHHhc----CCCccceeccccccccc----cccc---cccccceEeccccccccccc-------c--cCCCcc
Q 014120          160 SITDKWLYNQIS----ELPFLEYLALHYCMKLR----SINI---SSPRLKELVFERCEELVEFE-------L--DTPNLS  219 (430)
Q Consensus       160 ~i~~~~l~~l~~----~~p~Le~L~L~~c~~l~----~l~~---~~~~L~~L~l~~c~~L~~~~-------i--~~p~L~  219 (430)
                      .+++..+..+..    ..+.|+.|++++|.--.    .++.   ..++|++|++++| .+++..       +  ..++|+
T Consensus       181 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~  259 (461)
T 1z7x_W          181 DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLR  259 (461)
T ss_dssp             BCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCC
T ss_pred             CcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCce
Confidence            876544333322    45678888887764221    1121   2467888888877 444321       1  246666


Q ss_pred             eEEecce
Q 014120          220 IFKCFNY  226 (430)
Q Consensus       220 ~~~~~~~  226 (430)
                      ++...+.
T Consensus       260 ~L~L~~n  266 (461)
T 1z7x_W          260 TLWIWEC  266 (461)
T ss_dssp             EEECTTS
T ss_pred             EEECcCC
Confidence            6666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.40  E-value=3.8e-14  Score=142.65  Aligned_cols=161  Identities=11%  Similarity=0.077  Sum_probs=110.9

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~   95 (430)
                      ++........+|. +  .++|++|+|+++.+..  |..+.++++|++|+|++|.+........+.++++|++|++++|..
T Consensus        15 ~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l   91 (455)
T 3v47_A           15 AICINRGLHQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF   91 (455)
T ss_dssp             EECCSSCCSSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTT
T ss_pred             cCcCCCCcccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCcc
Confidence            4444456778886 2  3789999999987654  577899999999999999774322234578899999999999864


Q ss_pred             CC--ccccCCCCCcCEEEcCCCcCCceE--e----EeeccceeEEEeecCCCC--ceec-cCCCCcCceEEccCCCCChH
Q 014120           96 LK--SLQLLGLNKLKEIKLDSNRCGLER--V----YINGVNVHSVDIKVYLEP--CEVN-VSSCKNLTHLRLDGLSITDK  164 (430)
Q Consensus        96 l~--~l~l~~~~~L~~L~l~~c~~~l~~--l----~i~~p~L~~L~l~~~~~~--~~~~-~~~l~~L~~L~L~~~~i~~~  164 (430)
                      -.  .-.+.++++|++|++++|.  +..  .    .-..++|++|++++..+.  .+.. +.++++|++|++++|.+++.
T Consensus        92 ~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           92 LQLETGAFNGLANLEVLTLTQCN--LDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             CEECTTTTTTCTTCCEEECTTSC--CBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             CccChhhccCcccCCEEeCCCCC--CCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            22  2246678999999999986  221  1    113689999999883332  1233 78899999999999987542


Q ss_pred             HHHHHhcCC--Cccceeccccc
Q 014120          165 WLYNQISEL--PFLEYLALHYC  184 (430)
Q Consensus       165 ~l~~l~~~~--p~Le~L~L~~c  184 (430)
                      . +..+..+  +.|+.|+++++
T Consensus       170 ~-~~~l~~l~~~~L~~L~l~~n  190 (455)
T 3v47_A          170 C-EEDLLNFQGKHFTLLRLSSI  190 (455)
T ss_dssp             C-TTTSGGGTTCEEEEEECTTC
T ss_pred             C-hhhhhccccccccccccccC
Confidence            1 1112222  45556665544

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.40  E-value=1.7e-12  Score=126.44  Aligned_cols=209  Identities=16%  Similarity=0.146  Sum_probs=143.6

Q ss_pred             CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      ..+++|++  +++....+|. .+.++++|++|+++++.+..  +..+.++++|++|+|++|.++.-. ...+.++++|++
T Consensus        52 ~~L~~L~l--~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~  128 (353)
T 2z80_A           52 EAVKSLDL--SNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLS-SSWFKPLSSLTF  128 (353)
T ss_dssp             TTCCEEEC--TTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCC-HHHHTTCTTCSE
T ss_pred             ccCcEEEC--CCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCC-HhHhCCCccCCE
Confidence            35666554  4456777776 57779999999999987654  456899999999999999986421 345788999999


Q ss_pred             EEeeeCCC--CCc-cccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccC
Q 014120           88 ININNCPG--LKS-LQLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDG  158 (430)
Q Consensus        88 L~L~~c~~--l~~-l~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~  158 (430)
                      |++++|..  +.. -.+.++++|++|++++|. .+..+.    ...++|++|++++....  .+..+.++++|++|++++
T Consensus       129 L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~  207 (353)
T 2z80_A          129 LNLLGNPYKTLGETSLFSHLTKLQILRVGNMD-TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHM  207 (353)
T ss_dssp             EECTTCCCSSSCSSCSCTTCTTCCEEEEEESS-SCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEEC
T ss_pred             EECCCCCCcccCchhhhccCCCCcEEECCCCc-cccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCC
Confidence            99999743  222 235568999999999875 454442    13689999999883332  235678899999999999


Q ss_pred             CCCChHHHHH-HhcCCCccceeccccccccccccc-------cccccceEeccccccccc-----cc---ccCCCcceEE
Q 014120          159 LSITDKWLYN-QISELPFLEYLALHYCMKLRSINI-------SSPRLKELVFERCEELVE-----FE---LDTPNLSIFK  222 (430)
Q Consensus       159 ~~i~~~~l~~-l~~~~p~Le~L~L~~c~~l~~l~~-------~~~~L~~L~l~~c~~L~~-----~~---i~~p~L~~~~  222 (430)
                      |.+.  .++. .+..+++|+.|+++++.- ..++.       ....++.+++.++ .+..     +.   -..++|+.+.
T Consensus       208 n~l~--~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~l~~~~~~~~l~~l~L~~~-~l~~~~l~~l~~~l~~l~~L~~L~  283 (353)
T 2z80_A          208 KQHI--LLLEIFVDVTSSVECLELRDTDL-DTFHFSELSTGETNSLIKKFTFRNV-KITDESLFQVMKLLNQISGLLELE  283 (353)
T ss_dssp             SCST--THHHHHHHHTTTEEEEEEESCBC-TTCCCC------CCCCCCEEEEESC-BCCHHHHHHHHHHHHTCTTCCEEE
T ss_pred             Cccc--cchhhhhhhcccccEEECCCCcc-ccccccccccccccchhhccccccc-cccCcchhhhHHHHhcccCCCEEE
Confidence            9984  3443 556789999999987652 22111       1234555555544 2221     11   2346677777


Q ss_pred             eccee
Q 014120          223 CFNYV  227 (430)
Q Consensus       223 ~~~~~  227 (430)
                      ..++.
T Consensus       284 Ls~N~  288 (353)
T 2z80_A          284 FSRNQ  288 (353)
T ss_dssp             CCSSC
T ss_pred             CCCCC
Confidence            66554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.40  E-value=1.6e-12  Score=135.75  Aligned_cols=252  Identities=18%  Similarity=0.163  Sum_probs=139.5

Q ss_pred             CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      ..++.|+|  +++....+|+ .+..+++|++|+|++|.+..  |..+.++++|++|+|++|.++.- ...++.++++|++
T Consensus        75 ~~L~~L~L--~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l-~~~~~~~l~~L~~  151 (597)
T 3oja_B           75 RQVELLNL--NDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSL-PRGIFHNTPKLTT  151 (597)
T ss_dssp             CCCSEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEEC--CCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCCC-CHHHhccCCCCCE
Confidence            45655554  4455666665 67779999999999987654  45678999999999999988532 1234678999999


Q ss_pred             EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEe-eccceeEEEeecCCCCceeccCCC----------------
Q 014120           88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVDIKVYLEPCEVNVSSC----------------  148 (430)
Q Consensus        88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i-~~p~L~~L~l~~~~~~~~~~~~~l----------------  148 (430)
                      |++++|..  +..-.+.++++|++|++++|.  +..+.+ ..++|+.+++++....   .+...                
T Consensus       152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~l~~L~~L~l~~n~l~---~l~~~~~L~~L~ls~n~l~~~  226 (597)
T 3oja_B          152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNR--LTHVDLSLIPSLFHANVSYNLLS---TLAIPIAVEELDASHNSINVV  226 (597)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECTTSC--CSBCCGGGCTTCSEEECCSSCCS---EEECCTTCSEEECCSSCCCEE
T ss_pred             EEeeCCcCCCCChhhhhcCCcCcEEECcCCC--CCCcChhhhhhhhhhhcccCccc---cccCCchhheeeccCCccccc
Confidence            99998753  222235667889999988874  222222 2455666655552211   11122                


Q ss_pred             -----CcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc---cccccceEecccccccccccccCCCcce
Q 014120          149 -----KNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFELDTPNLSI  220 (430)
Q Consensus       149 -----~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~i~~p~L~~  220 (430)
                           ++|+.|++++|.+++.   ..+..++.|+.|+++++..-...+.   ..++|+.|++++| .++.+..       
T Consensus       227 ~~~~~~~L~~L~L~~n~l~~~---~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~~-------  295 (597)
T 3oja_B          227 RGPVNVELTILKLQHNNLTDT---AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN-RLVALNL-------  295 (597)
T ss_dssp             ECSCCSCCCEEECCSSCCCCC---GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTS-CCCEEEC-------
T ss_pred             ccccCCCCCEEECCCCCCCCC---hhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCC-CCCCCCc-------
Confidence                 3455555555555331   2344455555555554432211111   1344555555554 3332221       


Q ss_pred             EEecceeeEEeccccccceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceE
Q 014120          221 FKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHV  300 (430)
Q Consensus       221 ~~~~~~~~~~~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L  300 (430)
                               .....+.|..+++.-+....       +...+..+.+++.|++..+....  +       ....+++|+.|
T Consensus       296 ---------~~~~l~~L~~L~Ls~N~l~~-------i~~~~~~l~~L~~L~L~~N~l~~--~-------~~~~~~~L~~L  350 (597)
T 3oja_B          296 ---------YGQPIPTLKVLDLSHNHLLH-------VERNQPQFDRLENLYLDHNSIVT--L-------KLSTHHTLKNL  350 (597)
T ss_dssp             ---------SSSCCTTCCEEECCSSCCCC-------CGGGHHHHTTCSEEECCSSCCCC--C-------CCCTTCCCSEE
T ss_pred             ---------ccccCCCCcEEECCCCCCCc-------cCcccccCCCCCEEECCCCCCCC--c-------ChhhcCCCCEE
Confidence                     11112233333332111111       11123556788888877665432  1       13356788888


Q ss_pred             EEEEEe
Q 014120          301 SFSVLS  306 (430)
Q Consensus       301 ~l~~~~  306 (430)
                      .+..++
T Consensus       351 ~l~~N~  356 (597)
T 3oja_B          351 TLSHND  356 (597)
T ss_dssp             ECCSSC
T ss_pred             EeeCCC
Confidence            888775

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.40  E-value=3.8e-13  Score=129.93  Aligned_cols=256  Identities=14%  Similarity=0.073  Sum_probs=111.6

Q ss_pred             CCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc---cccCCCCCcCEEEcCCCcCCceEeEe-eccceeEEE
Q 014120           58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS---LQLLGLNKLKEIKLDSNRCGLERVYI-NGVNVHSVD  133 (430)
Q Consensus        58 ~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~---l~l~~~~~L~~L~l~~c~~~l~~l~i-~~p~L~~L~  133 (430)
                      ++|++|+|++|.++... +..+.++++|++|++++|. ++.   -.+.++++|++|++++|.  +..+.. ..++|++|+
T Consensus        54 ~~l~~L~l~~n~i~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~--l~~l~~~~~~~L~~L~  129 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELR-KDDFKGLQHLYALVLVNNK-ISKIHEKAFSPLRKLQKLYISKNH--LVEIPPNLPSSLVELR  129 (332)
T ss_dssp             TTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC-CCEECGGGSTTCTTCCEEECCSSC--CCSCCSSCCTTCCEEE
T ss_pred             CCCeEEECCCCcCCccC-HhHhhCCCCCcEEECCCCc-cCccCHhHhhCcCCCCEEECCCCc--CCccCccccccCCEEE
Confidence            44555555555443210 1123445555555555442 111   123344555555555442  111110 014555555


Q ss_pred             eecCCCC--ceeccCCCCcCceEEccCCCCChH-HHHHHhcCCCccceecccccccccccccc-ccccceEecccccccc
Q 014120          134 IKVYLEP--CEVNVSSCKNLTHLRLDGLSITDK-WLYNQISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELV  209 (430)
Q Consensus       134 l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~-~l~~l~~~~p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c~~L~  209 (430)
                      +++..+.  ....+.++++|+.|++++|.+++. ..+..+..+ .|+.|+++++. +..++.. .++|+.|+++++ .++
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~l~~~~~~~L~~L~l~~n-~i~  206 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK-LTGIPKDLPETLNELHLDHN-KIQ  206 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB-CSSCCSSSCSSCSCCBCCSS-CCC
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC-CCccCccccCCCCEEECCCC-cCC
Confidence            5442111  112345556666666666655421 112223333 55556555443 2222221 245555555555 333


Q ss_pred             ccc----ccCCCcceEEeccee--eE---EeccccccceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccce
Q 014120          210 EFE----LDTPNLSIFKCFNYV--ES---FSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAV  280 (430)
Q Consensus       210 ~~~----i~~p~L~~~~~~~~~--~~---~~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~  280 (430)
                      .+.    -..++|+.+...++.  ..   .......++.+++.-+...       .+...+..+.+++.|++..+...  
T Consensus       207 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-------~lp~~l~~l~~L~~L~l~~N~l~--  277 (332)
T 2ft3_A          207 AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-------RVPAGLPDLKLLQVVYLHTNNIT--  277 (332)
T ss_dssp             CCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-------BCCTTGGGCTTCCEEECCSSCCC--
T ss_pred             ccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-------ecChhhhcCccCCEEECCCCCCC--
Confidence            322    123445555444432  00   0112233444443211000       11122466788887777665433  


Q ss_pred             ecCcc-cccc-cCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120          281 LIPRE-LREI-LCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE  333 (430)
Q Consensus       281 ~i~~~-l~~~-~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~  333 (430)
                      .++.. .... ....+..++.|.+..++ .   ..+++.+..+..+++|+.|.+.
T Consensus       278 ~~~~~~~~~~~~~~~~~~l~~L~l~~N~-~---~~~~~~~~~~~~l~~L~~l~l~  328 (332)
T 2ft3_A          278 KVGVNDFCPVGFGVKRAYYNGISLFNNP-V---PYWEVQPATFRCVTDRLAIQFG  328 (332)
T ss_dssp             BCCTTSSSCSSCCSSSCCBSEEECCSSS-S---CGGGSCGGGGTTBCCSTTEEC-
T ss_pred             ccChhHccccccccccccccceEeecCc-c---cccccCcccccccchhhhhhcc
Confidence            22221 1111 11124678888887765 1   1123334557888899988874

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.40  E-value=1.6e-13  Score=145.28  Aligned_cols=162  Identities=17%  Similarity=0.166  Sum_probs=101.1

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~   95 (430)
                      ++.+......+|..+.  +++++|+|+++.+..  +..+.++++|++|+|++|.++... +..+.++++|++|++++|..
T Consensus         9 ~~cs~~~L~~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l   85 (680)
T 1ziw_A            9 ADCSHLKLTQVPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE-PELCQKLPMLKVLNLQHNEL   85 (680)
T ss_dssp             EECCSSCCSSCCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCC-TTHHHHCTTCCEEECCSSCC
T ss_pred             eECCCCCccccccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccC-HHHHhcccCcCEEECCCCcc
Confidence            4455555667776543  678888888876544  245777888888888888764321 33456778888888887642


Q ss_pred             --CCccccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHH
Q 014120           96 --LKSLQLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLY  167 (430)
Q Consensus        96 --l~~l~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~  167 (430)
                        +..-.+.++++|++|++++|.  +..+.    -.+++|++|++++....  ....+.++++|++|++++|.+++....
T Consensus        86 ~~l~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~  163 (680)
T 1ziw_A           86 SQLSDKTFAFCTNLTELHLMSNS--IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSE  163 (680)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSC--CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHH
T ss_pred             CccChhhhccCCCCCEEECCCCc--cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHH
Confidence              222235567888888887764  22221    13577888888773221  123456778888888888877542222


Q ss_pred             HH-hcCCCccceeccccc
Q 014120          168 NQ-ISELPFLEYLALHYC  184 (430)
Q Consensus       168 ~l-~~~~p~Le~L~L~~c  184 (430)
                      .+ ...++.|+.|+++++
T Consensus       164 ~~~~~~~~~L~~L~L~~n  181 (680)
T 1ziw_A          164 ELDIFANSSLKKLELSSN  181 (680)
T ss_dssp             HHGGGTTCEESEEECTTC
T ss_pred             HhhccccccccEEECCCC
Confidence            22 234677888887765

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.39  E-value=8.6e-13  Score=124.54  Aligned_cols=202  Identities=17%  Similarity=0.135  Sum_probs=139.7

Q ss_pred             EEEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        17 ~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      .++........+|..+  .++|++|+++++.+..  +..+.++++|++|+|++|.++... +..+.++++|++|++++|.
T Consensus        15 ~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~l~~n~   91 (285)
T 1ozn_A           15 TTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDNA   91 (285)
T ss_dssp             EEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSCT
T ss_pred             EEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeC-HhhcCCccCCCEEeCCCCC
Confidence            3455555677778654  4689999999987654  356889999999999999885431 3456789999999999987


Q ss_pred             CCCcc---ccCCCCCcCEEEcCCCcCCceEe----EeeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHH
Q 014120           95 GLKSL---QLLGLNKLKEIKLDSNRCGLERV----YINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKW  165 (430)
Q Consensus        95 ~l~~l---~l~~~~~L~~L~l~~c~~~l~~l----~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~  165 (430)
                      .++.+   .+.++++|++|++++|.  +..+    .-..++|++|++++..+.  ....+..+++|+.|++++|.+++  
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--  167 (285)
T 1ozn_A           92 QLRSVDPATFHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS--  167 (285)
T ss_dssp             TCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE--
T ss_pred             CccccCHHHhcCCcCCCEEECCCCc--CCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccc--
Confidence            55544   45667999999999875  2222    123678888888873322  12346788899999999988853  


Q ss_pred             HH-HHhcCCCccceeccccccccccccc---cccccceEeccccccccccc----ccCCCcceEEecce
Q 014120          166 LY-NQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE----LDTPNLSIFKCFNY  226 (430)
Q Consensus       166 l~-~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~----i~~p~L~~~~~~~~  226 (430)
                      ++ ..+.++++|+.|+++++..-...+.   ..++|+.|+++++ .++.+.    -..++|+.+...++
T Consensus       168 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCC-cCCcCCHHHcccCcccCEEeccCC
Confidence            22 2466788999999987653222122   2468888888887 555443    23466666665554

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.39  E-value=2.5e-13  Score=141.75  Aligned_cols=256  Identities=13%  Similarity=0.130  Sum_probs=169.5

Q ss_pred             ccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEE
Q 014120           32 VFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIK  111 (430)
Q Consensus        32 l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~  111 (430)
                      +..+++|+.|+++++.+.....+..+++|++|++++|.+..  ++.+  .+++|+.|++++|..+....+.++++|++|+
T Consensus       281 ~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l~~--lp~~--~l~~L~~L~l~~n~~~~~~~~~~l~~L~~L~  356 (606)
T 3vq2_A          281 FHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQLKQ--FPTL--DLPFLKSLTLTMNKGSISFKKVALPSLSYLD  356 (606)
T ss_dssp             CGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCCSS--CCCC--CCSSCCEEEEESCSSCEECCCCCCTTCCEEE
T ss_pred             cccCCCCCEEEecCccchhhhhccccccCCEEEcccccCcc--cccC--CCCccceeeccCCcCccchhhccCCCCCEEE
Confidence            66789999999999877653378889999999999998832  3433  8999999999999877777777889999999


Q ss_pred             cCCCcCCceEeE------eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccc
Q 014120          112 LDSNRCGLERVY------INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYC  184 (430)
Q Consensus       112 l~~c~~~l~~l~------i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c  184 (430)
                      +++|.  +..+.      ..+++|++|++++.... .+..+.++++|+.|++++|.+.+......+.+++.|+.|++++|
T Consensus       357 ls~n~--l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n  434 (606)
T 3vq2_A          357 LSRNA--LSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYT  434 (606)
T ss_dssp             CCSSC--EEEEEECCHHHHCCSCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTS
T ss_pred             CcCCc--cCCCcchhhhhccCCcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCC
Confidence            99875  33331      24688999998873322 23567788999999999998754322245678899999999887


Q ss_pred             cccccccc---cccccceEeccccccccc--cc---ccCCCcceEEecceeeEEeccccccceeEEEeeecCCchHHHHH
Q 014120          185 MKLRSINI---SSPRLKELVFERCEELVE--FE---LDTPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLK  256 (430)
Q Consensus       185 ~~l~~l~~---~~~~L~~L~l~~c~~L~~--~~---i~~p~L~~~~~~~~~~~~~~~~~sL~~v~l~~~~~~~~~~~~~~  256 (430)
                      ......+.   ..++|+.|++++| .++.  +.   -..++|+.+...++.         +..    .            
T Consensus       435 ~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~---------l~~----~------------  488 (606)
T 3vq2_A          435 NTKIDFDGIFLGLTSLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ---------LEQ----I------------  488 (606)
T ss_dssp             CCEECCTTTTTTCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC---------CCE----E------------
T ss_pred             CCCccchhhhcCCCCCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc---------CCc----c------------
Confidence            65443332   2578999999888 4443  11   234666666665543         000    0            


Q ss_pred             HHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCC-CCceeeE
Q 014120          257 FIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITP-HAETLSI  332 (430)
Q Consensus       257 l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP-~Le~L~i  332 (430)
                      ....+.++.+++.|++..+.... ..|..     ...+++|+.|.+..+.   ...+.   +. +...| +|+.|.+
T Consensus       489 ~~~~~~~l~~L~~L~Ls~N~l~~-~~~~~-----~~~l~~L~~L~l~~N~---l~~~p---~~-~~~l~~~L~~l~l  552 (606)
T 3vq2_A          489 SWGVFDTLHRLQLLNMSHNNLLF-LDSSH-----YNQLYSLSTLDCSFNR---IETSK---GI-LQHFPKSLAFFNL  552 (606)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSC-EEGGG-----TTTCTTCCEEECTTSC---CCCEE---SC-GGGSCTTCCEEEC
T ss_pred             ChhhhcccccCCEEECCCCcCCC-cCHHH-----ccCCCcCCEEECCCCc---CcccC---Hh-HhhhcccCcEEEc
Confidence            01223566777777776654332 22222     2235677777776553   11111   11 45666 5888887

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.39  E-value=1.1e-12  Score=137.14  Aligned_cols=192  Identities=17%  Similarity=0.065  Sum_probs=138.0

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEE
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~   89 (430)
                      .+++.++  ++++....+|..++  ++|++|++++|.+.. |.   .+++|++|+|++|.++.  ++.   .+++|++|+
T Consensus        40 ~~l~~L~--ls~n~L~~lp~~l~--~~L~~L~L~~N~l~~lp~---~l~~L~~L~Ls~N~l~~--lp~---~l~~L~~L~  107 (622)
T 3g06_A           40 NGNAVLN--VGESGLTTLPDCLP--AHITTLVIPDNNLTSLPA---LPPELRTLEVSGNQLTS--LPV---LPPGLLELS  107 (622)
T ss_dssp             HCCCEEE--CCSSCCSCCCSCCC--TTCSEEEECSCCCSCCCC---CCTTCCEEEECSCCCSC--CCC---CCTTCCEEE
T ss_pred             CCCcEEE--ecCCCcCccChhhC--CCCcEEEecCCCCCCCCC---cCCCCCEEEcCCCcCCc--CCC---CCCCCCEEE
Confidence            3565555  45566779998776  799999999998765 32   68999999999998853  222   789999999


Q ss_pred             eeeCCCCCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120           90 INNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (430)
Q Consensus        90 L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l  169 (430)
                      +++|. ++.+.- .+++|+.|++++|.  +..+....++|++|++++..+.. + -..+++|+.|++++|.++.  ++  
T Consensus       108 Ls~N~-l~~l~~-~l~~L~~L~L~~N~--l~~lp~~l~~L~~L~Ls~N~l~~-l-~~~~~~L~~L~L~~N~l~~--l~--  177 (622)
T 3g06_A          108 IFSNP-LTHLPA-LPSGLCKLWIFGNQ--LTSLPVLPPGLQELSVSDNQLAS-L-PALPSELCKLWAYNNQLTS--LP--  177 (622)
T ss_dssp             ECSCC-CCCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSC-C-CCCCTTCCEEECCSSCCSC--CC--
T ss_pred             CcCCc-CCCCCC-CCCCcCEEECCCCC--CCcCCCCCCCCCEEECcCCcCCC-c-CCccCCCCEEECCCCCCCC--Cc--
Confidence            99874 343333 46899999999874  44444456899999998843321 1 1235689999999998854  33  


Q ss_pred             hcCCCccceeccccccccccccccccccceEecccccccccccccCCCcceEEeccee
Q 014120          170 ISELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNYV  227 (430)
Q Consensus       170 ~~~~p~Le~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~~~i~~p~L~~~~~~~~~  227 (430)
                       ..+++|+.|+++++. +..++...++|+.|++++| .++.+.-..++|+.+...++.
T Consensus       178 -~~~~~L~~L~Ls~N~-l~~l~~~~~~L~~L~L~~N-~l~~l~~~~~~L~~L~Ls~N~  232 (622)
T 3g06_A          178 -MLPSGLQELSVSDNQ-LASLPTLPSELYKLWAYNN-RLTSLPALPSGLKELIVSGNR  232 (622)
T ss_dssp             -CCCTTCCEEECCSSC-CSCCCCCCTTCCEEECCSS-CCSSCCCCCTTCCEEECCSSC
T ss_pred             -ccCCCCcEEECCCCC-CCCCCCccchhhEEECcCC-cccccCCCCCCCCEEEccCCc
Confidence             567899999997654 5566666788999999887 666655445777777766553

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.38  E-value=2.1e-13  Score=144.34  Aligned_cols=282  Identities=17%  Similarity=0.113  Sum_probs=126.7

Q ss_pred             CccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEee-----------------------
Q 014120           37 SIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININ-----------------------   91 (430)
Q Consensus        37 ~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~-----------------------   91 (430)
                      +|++|++++|.+..  +..+.++++|++|+|++|.++.. .+..+.++++|+.|+++                       
T Consensus       249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~  327 (680)
T 1ziw_A          249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHL-FSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQW  327 (680)
T ss_dssp             CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEE-CTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTT
T ss_pred             CCCEEECCCCCcCccCcccccCcccccEeeCCCCccCcc-ChhhhcCCCCccEEeccchhhhcccccccccccChhhccc
Confidence            36666666665432  34556666666666666655322 12233445555555554                       


Q ss_pred             ----------eCCC--CCccccCCCCCcCEEEcCCCcCCceEeEe------eccceeEEEeecCCCC--ceeccCCCCcC
Q 014120           92 ----------NCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYI------NGVNVHSVDIKVYLEP--CEVNVSSCKNL  151 (430)
Q Consensus        92 ----------~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i------~~p~L~~L~l~~~~~~--~~~~~~~l~~L  151 (430)
                                +|..  +..-.+.++++|++|++++|......+..      ..++|+.|++++..+.  .+..+.++++|
T Consensus       328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  407 (680)
T 1ziw_A          328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL  407 (680)
T ss_dssp             CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence                      4321  11112334455555555544311111110      1135666666552222  12345666777


Q ss_pred             ceEEccCCCCChHHHHHHhcCCCccceecccccccccccc---ccccccceEeccccccccccc------ccCCCcceEE
Q 014120          152 THLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN---ISSPRLKELVFERCEELVEFE------LDTPNLSIFK  222 (430)
Q Consensus       152 ~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~---~~~~~L~~L~l~~c~~L~~~~------i~~p~L~~~~  222 (430)
                      +.|++++|.+++......+.++++|+.|++++|......+   ...++|+.|+++++ .++.+.      -..++|+.+.
T Consensus       408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~p~~~~~l~~L~~L~  486 (680)
T 1ziw_A          408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRV-ALKNVDSSPSPFQPLRNLTILD  486 (680)
T ss_dssp             CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTS-CCBCTTCSSCTTTTCTTCCEEE
T ss_pred             CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccc-cccccccCCcccccCCCCCEEE
Confidence            7777777766432222345566777777776654221111   12456666666655 222111      1235566666


Q ss_pred             eccee-e-E---EeccccccceeEEEeeecCCch--HHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCC
Q 014120          223 CFNYV-E-S---FSSNALALSQTLLCFISHPVDN--EWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLT  295 (430)
Q Consensus       223 ~~~~~-~-~---~~~~~~sL~~v~l~~~~~~~~~--~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~  295 (430)
                      ..++. . +   .......++.+++.-+...+..  .....-..++.++.+++.|++..+...  .+|..    ....++
T Consensus       487 Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~--~i~~~----~~~~l~  560 (680)
T 1ziw_A          487 LSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD--EIPVE----VFKDLF  560 (680)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCC--CCCTT----TTTTCT
T ss_pred             CCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCC--CCCHH----Hccccc
Confidence            55443 1 0   0112233444444211000000  000000012456667776666554332  23321    122345


Q ss_pred             CcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeE
Q 014120          296 YHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI  332 (430)
Q Consensus       296 ~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i  332 (430)
                      +|+.|.+..+.      +..+-+..+..+|+|++|.+
T Consensus       561 ~L~~L~Ls~N~------l~~l~~~~~~~l~~L~~L~L  591 (680)
T 1ziw_A          561 ELKIIDLGLNN------LNTLPASVFNNQVSLKSLNL  591 (680)
T ss_dssp             TCCEEECCSSC------CCCCCTTTTTTCTTCCEEEC
T ss_pred             CcceeECCCCC------CCcCCHhHhCCCCCCCEEEC
Confidence            66666665442      22222334566677777776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.38  E-value=4.1e-14  Score=136.61  Aligned_cols=196  Identities=17%  Similarity=0.223  Sum_probs=144.8

Q ss_pred             HHHHHhCCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC---CCCCCCCCCCCEEEEeeecCChHHHHHHhcC
Q 014120            5 LSYAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAG   81 (430)
Q Consensus         5 i~~a~~~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~---~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~   81 (430)
                      +......+++.+.+  ..+.....++.++.+++|++|++++|.+..   +..+.++++|++|+|++|.+++... ..++.
T Consensus        64 ~~~~~~~~l~~L~l--~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~-~~l~~  140 (336)
T 2ast_B           64 TGRLLSQGVIAFRC--PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIV-NTLAK  140 (336)
T ss_dssp             HHHHHHTTCSEEEC--TTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHH-HHHTT
T ss_pred             HHhhhhccceEEEc--CCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHH-HHHhc
Confidence            34445577877765  334556666678899999999999987543   3456789999999999999887654 45677


Q ss_pred             CCCccEEEeeeCCCCCcc----ccCCCCCcCEEEcCCCcCCceE-----eEeecc-ceeEEEeecC--CCC---ceeccC
Q 014120           82 CPLIEYININNCPGLKSL----QLLGLNKLKEIKLDSNRCGLER-----VYINGV-NVHSVDIKVY--LEP---CEVNVS  146 (430)
Q Consensus        82 ~p~Le~L~L~~c~~l~~l----~l~~~~~L~~L~l~~c~~~l~~-----l~i~~p-~L~~L~l~~~--~~~---~~~~~~  146 (430)
                      +++|++|++++|..++..    .+.++++|++|++++|. .+..     ....++ +|++|++++.  ...   ....+.
T Consensus       141 ~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~-~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~  219 (336)
T 2ast_B          141 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVR  219 (336)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC-CcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHh
Confidence            999999999999776642    14468999999999984 3332     123468 9999999983  222   123456


Q ss_pred             CCCcCceEEccCCC-CChHHHHHHhcCCCccceecccccccccccc----ccccccceEecccc
Q 014120          147 SCKNLTHLRLDGLS-ITDKWLYNQISELPFLEYLALHYCMKLRSIN----ISSPRLKELVFERC  205 (430)
Q Consensus       147 ~l~~L~~L~L~~~~-i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~----~~~~~L~~L~l~~c  205 (430)
                      ++++|+.|++++|. +++..++ .+..+++|+.|++++|..+....    ...++|+.|++++|
T Consensus       220 ~~~~L~~L~l~~~~~l~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~  282 (336)
T 2ast_B          220 RCPNLVHLDLSDSVMLKNDCFQ-EFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  282 (336)
T ss_dssp             HCTTCSEEECTTCTTCCGGGGG-GGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             hCCCCCEEeCCCCCcCCHHHHH-HHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc
Confidence            78999999999998 6654444 45778999999999987543221    13689999999998

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.38  E-value=4.1e-12  Score=121.51  Aligned_cols=89  Identities=20%  Similarity=0.239  Sum_probs=44.5

Q ss_pred             ccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCC
Q 014120           24 RIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLG  103 (430)
Q Consensus        24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~  103 (430)
                      ....+| .+..+++|++|++++|.+.....+.++++|++|+|++|.+++-  + .+..+++|++|++++|..-....+.+
T Consensus        52 ~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~~~~l~~L~~L~L~~n~l~~~--~-~~~~l~~L~~L~l~~n~l~~~~~l~~  127 (308)
T 1h6u_A           52 GVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDLTSTQITDVTPLAG  127 (308)
T ss_dssp             CCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEECTTSCCCCCGGGTT
T ss_pred             CccCch-hhhccCCCCEEEccCCcCCCChhHccCCCCCEEEccCCcCCCc--h-hhcCCCCCCEEECCCCCCCCchhhcC
Confidence            344444 3445566666666665544321255566666666666655331  1 24455666666665553211112444


Q ss_pred             CCCcCEEEcCCCc
Q 014120          104 LNKLKEIKLDSNR  116 (430)
Q Consensus       104 ~~~L~~L~l~~c~  116 (430)
                      +++|++|++++|.
T Consensus       128 l~~L~~L~l~~n~  140 (308)
T 1h6u_A          128 LSNLQVLYLDLNQ  140 (308)
T ss_dssp             CTTCCEEECCSSC
T ss_pred             CCCCCEEECCCCc
Confidence            5555666555543

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.36  E-value=2.8e-13  Score=140.91  Aligned_cols=282  Identities=11%  Similarity=0.012  Sum_probs=180.3

Q ss_pred             CCCccEEEEcCccCCC------CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCC-----ccccCC
Q 014120           35 LKSIYVLDFEFCKLEP------PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLK-----SLQLLG  103 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~------~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~-----~l~l~~  103 (430)
                      +++|++|+++++.+..      +..+.++++|++|+|++|.+.+  ++..+.++++|++|+++.+....     ...+..
T Consensus       191 ~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~--l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~  268 (592)
T 3ogk_B          191 NTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE--LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF  268 (592)
T ss_dssp             CCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG--GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC
T ss_pred             CCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH--HHHHHhhhhHHHhhcccccccccchHHHHHHhhc
Confidence            4455555555444321      1123478999999999997754  56778899999999998654321     123456


Q ss_pred             CCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCCC---ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCcccee
Q 014120          104 LNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYL  179 (430)
Q Consensus       104 ~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~~---~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L  179 (430)
                      +++|+.+++..+. ..+..+.-.+++|++|++++....   ....+.++++|+.|++. +.+.+..++.+..++++|+.|
T Consensus       269 ~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L  347 (592)
T 3ogk_B          269 PRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRL  347 (592)
T ss_dssp             CTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEE
T ss_pred             cccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEE
Confidence            7899999887653 233333345789999999883332   11224788999999998 667777788888889999999


Q ss_pred             cccc----------cccccccc-----ccccccceEeccccccccccc-----ccCCCcceEEecce-----eeE-----
Q 014120          180 ALHY----------CMKLRSIN-----ISSPRLKELVFERCEELVEFE-----LDTPNLSIFKCFNY-----VES-----  229 (430)
Q Consensus       180 ~L~~----------c~~l~~l~-----~~~~~L~~L~l~~c~~L~~~~-----i~~p~L~~~~~~~~-----~~~-----  229 (430)
                      ++++          |..+....     ...++|++|++ .|..++...     -..|+|+.+...+.     ..-     
T Consensus       348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~  426 (592)
T 3ogk_B          348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN  426 (592)
T ss_dssp             EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH
T ss_pred             EeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH
Confidence            9985          76664321     23678999998 454665322     23688888887531     110     


Q ss_pred             ----EeccccccceeEEEeeecCCchHHHHHHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEE
Q 014120          230 ----FSSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVL  305 (430)
Q Consensus       230 ----~~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~  305 (430)
                          .......|+.+++......-..   ..+..+...+++++.|++..+......++...     ..+++|+.|.+..+
T Consensus       427 ~~~~~~~~~~~L~~L~L~~~~~~l~~---~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-----~~~~~L~~L~l~~n  498 (592)
T 3ogk_B          427 GVRSLLIGCKKLRRFAFYLRQGGLTD---LGLSYIGQYSPNVRWMLLGYVGESDEGLMEFS-----RGCPNLQKLEMRGC  498 (592)
T ss_dssp             HHHHHHHHCTTCCEEEEECCGGGCCH---HHHHHHHHSCTTCCEEEECSCCSSHHHHHHHH-----TCCTTCCEEEEESC
T ss_pred             HHHHHHHhCCCCCEEEEecCCCCccH---HHHHHHHHhCccceEeeccCCCCCHHHHHHHH-----hcCcccCeeeccCC
Confidence                0122456777777431100000   13455556688999999887764332222211     13478999999887


Q ss_pred             eccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120          306 SEILEVSLANLVDCLLWITPHAETLSIE  333 (430)
Q Consensus       306 ~~~~~~~~~~i~~~LL~~cP~Le~L~i~  333 (430)
                      + ..    ...++.+...+|+|+.|.+.
T Consensus       499 ~-l~----~~~~~~~~~~l~~L~~L~ls  521 (592)
T 3ogk_B          499 C-FS----ERAIAAAVTKLPSLRYLWVQ  521 (592)
T ss_dssp             C-CB----HHHHHHHHHHCSSCCEEEEE
T ss_pred             C-Cc----HHHHHHHHHhcCccCeeECc
Confidence            4 21    12345667889999999995

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.35  E-value=3.1e-12  Score=122.37  Aligned_cols=185  Identities=18%  Similarity=0.168  Sum_probs=136.9

Q ss_pred             CCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcC
Q 014120           34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLD  113 (430)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~  113 (430)
                      .+++|++|+++++.+.....+..+++|++|+|++|.+++.  .. +..+++|++|++++|..-..-.+.++++|++|+++
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~~~~l~~L~~L~L~~n~i~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  115 (308)
T 1h6u_A           39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--AP-LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLT  115 (308)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCCSCCEEECCSCCCSCCGGGTTCTTCCEEECT
T ss_pred             HcCCcCEEEeeCCCccCchhhhccCCCCEEEccCCcCCCC--hh-HccCCCCCEEEccCCcCCCchhhcCCCCCCEEECC
Confidence            4789999999998876544688899999999999998653  22 88999999999999863222246678999999999


Q ss_pred             CCc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc
Q 014120          114 SNR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI  192 (430)
Q Consensus       114 ~c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~  192 (430)
                      +|. ..+.. ...+++|++|++++........+..+++|+.|++++|.+++  ++. +.++++|+.|+++++. +..++.
T Consensus       116 ~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~l~~n~-l~~~~~  190 (308)
T 1h6u_A          116 STQITDVTP-LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSD--LTP-LANLSKLTTLKADDNK-ISDISP  190 (308)
T ss_dssp             TSCCCCCGG-GTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCCCGG
T ss_pred             CCCCCCchh-hcCCCCCCEEECCCCccCcCccccCCCCccEEEccCCcCCC--Chh-hcCCCCCCEEECCCCc-cCcChh
Confidence            886 22222 12368999999988433322337788999999999999865  222 7789999999998764 333332


Q ss_pred             --cccccceEeccccccccccc--ccCCCcceEEeccee
Q 014120          193 --SSPRLKELVFERCEELVEFE--LDTPNLSIFKCFNYV  227 (430)
Q Consensus       193 --~~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~~  227 (430)
                        ..++|+.|++++| .++.+.  -..++|+.+...++.
T Consensus       191 l~~l~~L~~L~L~~N-~l~~~~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          191 LASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             GGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEEEE
T ss_pred             hcCCCCCCEEEccCC-ccCccccccCCCCCCEEEccCCe
Confidence              3578999999998 565443  345788888776664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.35  E-value=1.3e-11  Score=127.15  Aligned_cols=33  Identities=9%  Similarity=-0.055  Sum_probs=20.5

Q ss_pred             CCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120          295 TYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE  333 (430)
Q Consensus       295 ~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~  333 (430)
                      .+|+.|.+..+.      +..+-..+.+.+|+|++|.+.
T Consensus       310 ~~L~~L~l~~n~------l~~ip~~~~~~l~~L~~L~Ls  342 (549)
T 2z81_A          310 EKVKRITVENSK------VFLVPCSFSQHLKSLEFLDLS  342 (549)
T ss_dssp             TTCCEEEEESSC------CCCCCHHHHHHCTTCCEEECC
T ss_pred             ccceEEEeccCc------cccCCHHHHhcCccccEEEcc
Confidence            467777776552      112222445788999999984

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.35  E-value=1.1e-12  Score=125.93  Aligned_cols=208  Identities=14%  Similarity=0.058  Sum_probs=143.2

Q ss_pred             CceEEEEEecCCccc---cCCccccCCCCccEEEEcC-ccCC--CCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCc
Q 014120           12 NVKELKLDVGCCRIY---NLPQIVFYLKSIYVLDFEF-CKLE--PPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLI   85 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~---~LP~~l~~~~~L~~L~Ls~-~~~~--~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~L   85 (430)
                      .|++++|..  +...   .+|+.+.++++|++|++++ +.+.  .|..+.++++|++|+|++|.++.. ++..+.++++|
T Consensus        51 ~l~~L~L~~--~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~-~p~~~~~l~~L  127 (313)
T 1ogq_A           51 RVNNLDLSG--LNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTL  127 (313)
T ss_dssp             CEEEEEEEC--CCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTC
T ss_pred             eEEEEECCC--CCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCc-CCHHHhCCCCC
Confidence            455555544  3333   6899999999999999995 5443  366788999999999999988532 24457889999


Q ss_pred             cEEEeeeCCCC--CccccCCCCCcCEEEcCCCcCCce-EeE---eecc-ceeEEEeecCCCC--ceeccCCCCcCceEEc
Q 014120           86 EYININNCPGL--KSLQLLGLNKLKEIKLDSNRCGLE-RVY---INGV-NVHSVDIKVYLEP--CEVNVSSCKNLTHLRL  156 (430)
Q Consensus        86 e~L~L~~c~~l--~~l~l~~~~~L~~L~l~~c~~~l~-~l~---i~~p-~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L  156 (430)
                      ++|++++|..-  ..-.+.++++|++|++++|.  +. .+.   ...+ +|++|++++....  .+..+..++ |+.|++
T Consensus       128 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~L  204 (313)
T 1ogq_A          128 VTLDFSYNALSGTLPPSISSLPNLVGITFDGNR--ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDL  204 (313)
T ss_dssp             CEEECCSSEEESCCCGGGGGCTTCCEEECCSSC--CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEEC
T ss_pred             CEEeCCCCccCCcCChHHhcCCCCCeEECcCCc--ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEEC
Confidence            99999998532  22235668999999999875  32 221   1234 8899988873221  234556665 999999


Q ss_pred             cCCCCChHHHHHHhcCCCccceeccccccccccccc--cccccceEecccccccc-ccc---ccCCCcceEEeccee
Q 014120          157 DGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI--SSPRLKELVFERCEELV-EFE---LDTPNLSIFKCFNYV  227 (430)
Q Consensus       157 ~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~--~~~~L~~L~l~~c~~L~-~~~---i~~p~L~~~~~~~~~  227 (430)
                      ++|.+++ ..+..+..+++|+.|+++++.....++.  ..++|+.|+++++ .++ .+.   -..++|+.+...++.
T Consensus       205 s~N~l~~-~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          205 SRNMLEG-DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNN-RIYGTLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             CSSEEEE-CCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCSS-CCEECCCGGGGGCTTCCEEECCSSE
T ss_pred             cCCcccC-cCCHHHhcCCCCCEEECCCCceeeecCcccccCCCCEEECcCC-cccCcCChHHhcCcCCCEEECcCCc
Confidence            9998853 3455677889999999987654333332  2578999999888 454 222   244677777766553

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.34  E-value=4.6e-13  Score=138.74  Aligned_cols=138  Identities=14%  Similarity=0.139  Sum_probs=86.1

Q ss_pred             EEEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        17 ~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      .++++++....+|..+.  ++|++|+++++.+..  +..+.++++|++|+|++|.++... +..+.++++|++|++++|.
T Consensus        35 ~l~ls~~~L~~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~Ls~N~  111 (562)
T 3a79_B           35 MVDYSNRNLTHVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLD-FHVFLFNQDLEYLDVSHNR  111 (562)
T ss_dssp             EEECTTSCCCSCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEEC-TTTTTTCTTCCEEECTTSC
T ss_pred             EEEcCCCCCccCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCC-HHHhCCCCCCCEEECCCCc
Confidence            45566666777887654  788888888876654  356788888888888888775421 3346678888888888864


Q ss_pred             CCCccccCCCCCcCEEEcCCCcCCceEeE-----eeccceeEEEeecCCCCceeccCCCCcC--ceEEccCCCC
Q 014120           95 GLKSLQLLGLNKLKEIKLDSNRCGLERVY-----INGVNVHSVDIKVYLEPCEVNVSSCKNL--THLRLDGLSI  161 (430)
Q Consensus        95 ~l~~l~l~~~~~L~~L~l~~c~~~l~~l~-----i~~p~L~~L~l~~~~~~~~~~~~~l~~L--~~L~L~~~~i  161 (430)
                       ++.+...++++|++|++++|.  +..+.     -..++|++|++++..+. ...+..+++|  +.|++++|.+
T Consensus       112 -l~~lp~~~l~~L~~L~Ls~N~--l~~l~~p~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~L~L~~L~L~~n~l  181 (562)
T 3a79_B          112 -LQNISCCPMASLRHLDLSFND--FDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHLHLSCILLDLVSY  181 (562)
T ss_dssp             -CCEECSCCCTTCSEEECCSSC--CSBCCCCGGGGGCTTCCEEEEECSBCC-TTTTGGGTTSCEEEEEEEESSC
T ss_pred             -CCccCccccccCCEEECCCCC--ccccCchHhhcccCcccEEecCCCccc-cCchhhhhhceeeEEEeecccc
Confidence             444443356788888887764  22221     13567777777663222 1233334444  5555555544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.34  E-value=2.5e-12  Score=129.56  Aligned_cols=210  Identities=16%  Similarity=0.061  Sum_probs=153.0

Q ss_pred             CCceEEEEEecCCccccC-CccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~L-P~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      .+++.|+|  +++....+ |..+.++++|++|+|+++.+..  +..+.++++|++|+|++|.++... ...+.++++|++
T Consensus        75 ~~l~~L~L--~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  151 (452)
T 3zyi_A           75 SNTRYLNL--MENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP-SGAFEYLSKLRE  151 (452)
T ss_dssp             TTCSEEEC--CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCC-TTTSSSCTTCCE
T ss_pred             CCccEEEC--cCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccC-hhhhcccCCCCE
Confidence            35666555  44556666 4567779999999999987654  467889999999999999885321 334678999999


Q ss_pred             EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEe----eccceeEEEeecCCCCceeccCCCCcCceEEccCCCC
Q 014120           88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYI----NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI  161 (430)
Q Consensus        88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i----~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i  161 (430)
                      |+|++|..  +..-.+.++++|+.|++++|. .+..+..    ..++|++|++++..+.....+..+++|+.|+|++|.+
T Consensus       152 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  230 (452)
T 3zyi_A          152 LWLRNNPIESIPSYAFNRVPSLMRLDLGELK-KLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEELEMSGNHF  230 (452)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCTTCCEEECTTSCCSSCCCCTTCTTCCEEECTTSCC
T ss_pred             EECCCCCcceeCHhHHhcCCcccEEeCCCCC-CccccChhhccCCCCCCEEECCCCcccccccccccccccEEECcCCcC
Confidence            99999853  222235678999999999887 6666543    3689999999884433234577889999999999998


Q ss_pred             ChHHHHHHhcCCCccceeccccccccccccc---cccccceEeccccccccccc---c-cCCCcceEEecce
Q 014120          162 TDKWLYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNY  226 (430)
Q Consensus       162 ~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~  226 (430)
                      ++ ..+..+.++++|+.|+++++..-...+.   ..++|+.|+++++ .++.+.   + ..++|+.+...++
T Consensus       231 ~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N  300 (452)
T 3zyi_A          231 PE-IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHN-NLSSLPHDLFTPLRYLVELHLHHN  300 (452)
T ss_dssp             SE-ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCTTSSTTCTTCCEEECCSS
T ss_pred             cc-cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCC-cCCccChHHhccccCCCEEEccCC
Confidence            54 2245678899999999987653222121   2578999999998 676554   2 3477888777665

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.34  E-value=7.6e-12  Score=120.55  Aligned_cols=206  Identities=19%  Similarity=0.213  Sum_probs=118.8

Q ss_pred             CceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120           12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L   88 (430)
                      .++.+  +++++....+|+ .+.++++|++|+++++.+..  |..+.++++|++|+|++|.++.-  +.  ...++|++|
T Consensus        53 ~l~~L--~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l--~~--~~~~~L~~L  126 (330)
T 1xku_A           53 DTALL--DLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--PE--KMPKTLQEL  126 (330)
T ss_dssp             TCCEE--ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--CS--SCCTTCCEE
T ss_pred             CCeEE--ECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc--Ch--hhcccccEE
Confidence            45554  455556777776 56679999999999987654  56788899999999999877421  11  122677888


Q ss_pred             EeeeCCC--CCccccCCCCCcCEEEcCCCcCC---ceEe-EeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120           89 NINNCPG--LKSLQLLGLNKLKEIKLDSNRCG---LERV-YINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (430)
Q Consensus        89 ~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~---l~~l-~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~  162 (430)
                      ++++|..  +..-.+.++++|+.|+++.|.-.   .... .-.+++|++|++++.... .....-.++|+.|++++|.++
T Consensus       127 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~n~l~  205 (330)
T 1xku_A          127 RVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKIT  205 (330)
T ss_dssp             ECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCCTTCSEEECTTSCCC
T ss_pred             ECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCccccccCCEEECCCCcCC
Confidence            8777642  11222455677777777765400   1000 112466777777662221 011111256777777777664


Q ss_pred             hHHHHHHhcCCCccceeccccccccccccc----cccccceEeccccccccccc---ccCCCcceEEeccee
Q 014120          163 DKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV  227 (430)
Q Consensus       163 ~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~~  227 (430)
                      +. .+..+.++++|+.|+++++.. ..++.    ..++|+.|++++| .++.+.   ...++|+.+...++.
T Consensus       206 ~~-~~~~~~~l~~L~~L~Ls~n~l-~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~  274 (330)
T 1xku_A          206 KV-DAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNNN  274 (330)
T ss_dssp             EE-CTGGGTTCTTCCEEECCSSCC-CEECTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSSC
T ss_pred             cc-CHHHhcCCCCCCEEECCCCcC-ceeChhhccCCCCCCEEECCCC-cCccCChhhccCCCcCEEECCCCc
Confidence            31 123455667777777765542 22211    2456777777766 455442   234666666665543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.34  E-value=8e-13  Score=125.99  Aligned_cols=206  Identities=18%  Similarity=0.221  Sum_probs=132.7

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC-C-CCCCCCCCCCEEEEeeecCChHH-HHHHhcCCCCccEEEeeeCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEV-IRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~-~~~~~l~~L~~L~Ls~~~~~~~~-l~~l~~~~p~Le~L~L~~c~   94 (430)
                      ++........+|..+.  ++|++|+++++.+.. | ..+.++++|++|+|++|.++... ....+.++++|++|++++|.
T Consensus        12 l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~   89 (306)
T 2z66_A           12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG   89 (306)
T ss_dssp             EECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCS
T ss_pred             EEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCc
Confidence            4455556778887654  689999999987654 3 44789999999999999885321 12234478999999999875


Q ss_pred             CCCcc--ccCCCCCcCEEEcCCCc-CCceE--eEeeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHH
Q 014120           95 GLKSL--QLLGLNKLKEIKLDSNR-CGLER--VYINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLY  167 (430)
Q Consensus        95 ~l~~l--~l~~~~~L~~L~l~~c~-~~l~~--l~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~  167 (430)
                      . ..+  .+.++++|++|++++|. ..+..  .....++|++|++++....  ....+.++++|++|++++|.+++..++
T Consensus        90 i-~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  168 (306)
T 2z66_A           90 V-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLP  168 (306)
T ss_dssp             E-EEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEEC
T ss_pred             c-ccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccch
Confidence            3 222  24567899999998864 11111  1123577888888773221  123466778888888888877543455


Q ss_pred             HHhcCCCccceeccccccccccccc---cccccceEeccccccccccc---c-cCCCcceEEeccee
Q 014120          168 NQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV  227 (430)
Q Consensus       168 ~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~  227 (430)
                      ..+..+++|+.|+++++..-...+.   ..++|+.|+++++ .++.+.   + ..++|+.+...++.
T Consensus       169 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~  234 (306)
T 2z66_A          169 DIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNH  234 (306)
T ss_dssp             SCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCSBCCSGGGTTCTTCCEEECTTSC
T ss_pred             hHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCC-ccCccChhhccCcccCCEeECCCCC
Confidence            5667788888888876643221121   2467888888877 454432   2 23666666665543

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.34  E-value=1.2e-11  Score=126.78  Aligned_cols=144  Identities=14%  Similarity=0.085  Sum_probs=85.4

Q ss_pred             CCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccc--cccc---cccccceEeccccccccc-ccc----cC
Q 014120          146 SSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLR--SINI---SSPRLKELVFERCEELVE-FEL----DT  215 (430)
Q Consensus       146 ~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~--~l~~---~~~~L~~L~l~~c~~L~~-~~i----~~  215 (430)
                      ..+++|++|++++|.+++ .++..+.+++.|+.|+++++..-.  .++.   ..++|+.|+++++ .++. +..    ..
T Consensus       321 ~~l~~L~~L~Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N-~l~~~l~~~~~~~l  398 (520)
T 2z7x_B          321 SKISPFLHLDFSNNLLTD-TVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN-SVSYDEKKGDCSWT  398 (520)
T ss_dssp             SSCCCCCEEECCSSCCCT-TTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS-CCBCCGGGCSCCCC
T ss_pred             hhCCcccEEEeECCccCh-hhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC-cCCcccccchhccC
Confidence            677899999999998864 234556789999999998765322  3221   3578999999988 5554 431    23


Q ss_pred             CCcceEEecceeeEEeccccccceeEEEeeecCCchHHHHHHHHHHhhC-CCCceEeeeEeeccceecCcccccccCCCC
Q 014120          216 PNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARF-NLCSNVLNLQCNHEAVLIPRELREILCPPL  294 (430)
Q Consensus       216 p~L~~~~~~~~~~~~~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l-~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~  294 (430)
                      ++|+.+...++. +                  .         ......+ .+++.|++..+...  .+|....     .+
T Consensus       399 ~~L~~L~Ls~N~-l------------------~---------~~~~~~l~~~L~~L~Ls~N~l~--~ip~~~~-----~l  443 (520)
T 2z7x_B          399 KSLLSLNMSSNI-L------------------T---------DTIFRCLPPRIKVLDLHSNKIK--SIPKQVV-----KL  443 (520)
T ss_dssp             TTCCEEECCSSC-C------------------C---------GGGGGSCCTTCCEEECCSSCCC--CCCGGGG-----GC
T ss_pred             ccCCEEECcCCC-C------------------C---------cchhhhhcccCCEEECCCCccc--ccchhhh-----cC
Confidence            566666554432 0                  0         0011122 46676666655433  4444332     34


Q ss_pred             CCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeE
Q 014120          295 TYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI  332 (430)
Q Consensus       295 ~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i  332 (430)
                      ++|++|.+..+.      +..+-+..+..+|+|++|.+
T Consensus       444 ~~L~~L~L~~N~------l~~l~~~~~~~l~~L~~L~l  475 (520)
T 2z7x_B          444 EALQELNVASNQ------LKSVPDGIFDRLTSLQKIWL  475 (520)
T ss_dssp             TTCCEEECCSSC------CCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCCEEECCCCc------CCccCHHHhccCCcccEEEC
Confidence            677777776653      11111123567788888887

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.32  E-value=2.6e-13  Score=130.38  Aligned_cols=183  Identities=15%  Similarity=0.127  Sum_probs=127.9

Q ss_pred             CCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEc
Q 014120           35 LKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKL  112 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l  112 (430)
                      +++|++|+|+++.+..  +..+.++++|++|+|++|.+++..  . +..+++|++|++++|. ++.+.  ..++|++|++
T Consensus        33 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~-~~~l~~L~~L~Ls~n~-l~~l~--~~~~L~~L~l  106 (317)
T 3o53_A           33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL--D-LESLSTLRTLDLNNNY-VQELL--VGPSIETLHA  106 (317)
T ss_dssp             GGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEE--E-ETTCTTCCEEECCSSE-EEEEE--ECTTCCEEEC
T ss_pred             CCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcch--h-hhhcCCCCEEECcCCc-ccccc--CCCCcCEEEC
Confidence            6689999999987654  245778899999999998874321  1 6788899999998874 33322  3478888888


Q ss_pred             CCCcCCceEe-EeeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccccc
Q 014120          113 DSNRCGLERV-YINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRS  189 (430)
Q Consensus       113 ~~c~~~l~~l-~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~  189 (430)
                      ++|.  +..+ ....++|++|++++..+.  ....+..+++|+.|++++|.+++.....+...++.|+.|+++++. +..
T Consensus       107 ~~n~--l~~~~~~~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~-l~~  183 (317)
T 3o53_A          107 ANNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNF-IYD  183 (317)
T ss_dssp             CSSC--CSEEEECCCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSC-CCE
T ss_pred             CCCc--cCCcCccccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCc-Ccc
Confidence            8864  3333 223678888888883332  234667788999999999988654444455678899999998765 333


Q ss_pred             ccc--cccccceEeccccccccccc---ccCCCcceEEeccee
Q 014120          190 INI--SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV  227 (430)
Q Consensus       190 l~~--~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~~  227 (430)
                      ++.  ..++|+.|+++++ .++.+.   ...++|+.+...++.
T Consensus       184 ~~~~~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~L~~L~L~~N~  225 (317)
T 3o53_A          184 VKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK  225 (317)
T ss_dssp             EECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC
T ss_pred             cccccccccCCEEECCCC-cCCcchhhhcccCcccEEECcCCc
Confidence            332  2678899999887 565442   345788888877664

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.32  E-value=1.4e-12  Score=125.01  Aligned_cols=193  Identities=15%  Similarity=0.104  Sum_probs=139.8

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCC--CCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLE--PPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~--~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L   88 (430)
                      ..++.|+|.-.+.-...+|..+.++++|++|+|+++.+.  .|..+.++++|++|+|++|.+++. ++..+..+++|++|
T Consensus        76 ~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~-~p~~~~~l~~L~~L  154 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred             CCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCc-CChHHhcCCCCCeE
Confidence            467788876322334478989999999999999998765  366789999999999999988532 24457889999999


Q ss_pred             EeeeCCCCCc--cccCCCC-CcCEEEcCCCcCCce-Ee--EeeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCC
Q 014120           89 NINNCPGLKS--LQLLGLN-KLKEIKLDSNRCGLE-RV--YINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLS  160 (430)
Q Consensus        89 ~L~~c~~l~~--l~l~~~~-~L~~L~l~~c~~~l~-~l--~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~  160 (430)
                      ++++|..-..  ..+.+++ +|+.|++++|.  +. .+  .+....|+.|++++....  .+..+.++++|+.|++++|.
T Consensus       155 ~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~--l~~~~~~~~~~l~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~  232 (313)
T 1ogq_A          155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNR--LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS  232 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSE--EEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSE
T ss_pred             ECcCCcccCcCCHHHhhhhhcCcEEECcCCe--eeccCChHHhCCcccEEECcCCcccCcCCHHHhcCCCCCEEECCCCc
Confidence            9999864212  2344565 99999999875  22 11  122224899999883221  23567889999999999998


Q ss_pred             CChHHHHHHhcCCCccceeccccccccccccc---cccccceEecccccccc
Q 014120          161 ITDKWLYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELV  209 (430)
Q Consensus       161 i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~  209 (430)
                      ++.. ++. +..+++|+.|+++++.....++.   ..++|+.|+++++ .++
T Consensus       233 l~~~-~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~  281 (313)
T 1ogq_A          233 LAFD-LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLC  281 (313)
T ss_dssp             ECCB-GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEE
T ss_pred             eeee-cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCC-ccc
Confidence            8532 222 67789999999998765444443   2578999999998 454

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.31  E-value=4.9e-12  Score=127.03  Aligned_cols=210  Identities=14%  Similarity=0.095  Sum_probs=152.1

Q ss_pred             CCceEEEEEecCCccccCC-ccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP-~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      .+++.|+|  ..+....+| ..+.++++|++|+|+++.+..  +..+.++++|++|+|++|.++... ...+..+++|++
T Consensus        64 ~~l~~L~L--~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  140 (440)
T 3zyj_A           64 TNTRLLNL--HENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP-NGAFVYLSKLKE  140 (440)
T ss_dssp             TTCSEEEC--CSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCC-TTTSCSCSSCCE
T ss_pred             CCCcEEEc--cCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeC-HhHhhccccCce
Confidence            34566554  445566665 556779999999999987654  357889999999999999885321 235778999999


Q ss_pred             EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEe----eccceeEEEeecCCCCceeccCCCCcCceEEccCCCC
Q 014120           88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYI----NGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI  161 (430)
Q Consensus        88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i----~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i  161 (430)
                      |++++|..  +....+.++++|++|++++|. .+..+..    ..++|++|++++..+.....+..+++|+.|+|++|.+
T Consensus       141 L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~-~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l  219 (440)
T 3zyj_A          141 LWLRNNPIESIPSYAFNRIPSLRRLDLGELK-RLSYISEGAFEGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHL  219 (440)
T ss_dssp             EECCSCCCCEECTTTTTTCTTCCEEECCCCT-TCCEECTTTTTTCSSCCEEECTTSCCSSCCCCTTCSSCCEEECTTSCC
T ss_pred             eeCCCCcccccCHHHhhhCcccCEeCCCCCC-CcceeCcchhhcccccCeecCCCCcCccccccCCCcccCEEECCCCcc
Confidence            99999753  222245678999999999876 6655532    3689999999884333233578889999999999998


Q ss_pred             ChHHHHHHhcCCCccceeccccccccccccc----cccccceEecccccccccccc----cCCCcceEEeccee
Q 014120          162 TDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFEL----DTPNLSIFKCFNYV  227 (430)
Q Consensus       162 ~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~i----~~p~L~~~~~~~~~  227 (430)
                      ++ ..+..+.++++|+.|+++++. +..+..    ..++|+.|+++++ .++.+..    ..++|+.+...++.
T Consensus       220 ~~-~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          220 SA-IRPGSFQGLMHLQKLWMIQSQ-IQVIERNAFDNLQSLVEINLAHN-NLTLLPHDLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CE-ECTTTTTTCTTCCEEECTTCC-CCEECTTSSTTCTTCCEEECTTS-CCCCCCTTTTSSCTTCCEEECCSSC
T ss_pred             Cc-cChhhhccCccCCEEECCCCc-eeEEChhhhcCCCCCCEEECCCC-CCCccChhHhccccCCCEEEcCCCC
Confidence            54 224567789999999998764 333322    2578999999998 6765542    34777777776653

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.30  E-value=1.8e-12  Score=132.07  Aligned_cols=193  Identities=16%  Similarity=0.118  Sum_probs=132.1

Q ss_pred             cccCCccccCC----CCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc
Q 014120           25 IYNLPQIVFYL----KSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS   98 (430)
Q Consensus        25 ~~~LP~~l~~~----~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~   98 (430)
                      ...+|..+...    ++|++|+|+++.+..  |..+.++++|++|+|++|.+++.. +  +..+++|++|+|++|. ++.
T Consensus        19 ~~~l~~~l~~l~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~--l~~l~~L~~L~Ls~N~-l~~   94 (487)
T 3oja_A           19 DSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL-D--LESLSTLRTLDLNNNY-VQE   94 (487)
T ss_dssp             TTTHHHHHHTTSTTGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE-E--CTTCTTCCEEECCSSE-EEE
T ss_pred             hhhhHHHHHHhcccCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc-c--cccCCCCCEEEecCCc-CCC
Confidence            34455555553    379999999987654  356788999999999998875321 1  7788999999998873 333


Q ss_pred             cccCCCCCcCEEEcCCCcCCceEe-EeeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCc
Q 014120           99 LQLLGLNKLKEIKLDSNRCGLERV-YINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPF  175 (430)
Q Consensus        99 l~l~~~~~L~~L~l~~c~~~l~~l-~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~  175 (430)
                      +.  ..++|++|++++|.  +..+ ....++|++|++++..+.  .+..+.++++|+.|+|++|.+++.....+...++.
T Consensus        95 l~--~~~~L~~L~L~~N~--l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~  170 (487)
T 3oja_A           95 LL--VGPSIETLHAANNN--ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT  170 (487)
T ss_dssp             EE--ECTTCCEEECCSSC--CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred             CC--CCCCcCEEECcCCc--CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence            32  23788888888875  3322 223678888888873332  23466778889999999998865433444457889


Q ss_pred             cceeccccccccccccc--cccccceEeccccccccccc---ccCCCcceEEeccee
Q 014120          176 LEYLALHYCMKLRSINI--SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV  227 (430)
Q Consensus       176 Le~L~L~~c~~l~~l~~--~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~~  227 (430)
                      |+.|+++++. +..++.  ..++|+.|+++++ .++.+.   ...++|..+...++.
T Consensus       171 L~~L~Ls~N~-l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~Ls~N~  225 (487)
T 3oja_A          171 LEHLNLQYNF-IYDVKGQVVFAKLKTLDLSSN-KLAFMGPEFQSAAGVTWISLRNNK  225 (487)
T ss_dssp             CCEEECTTSC-CCEEECCCCCTTCCEEECCSS-CCCEECGGGGGGTTCSEEECTTSC
T ss_pred             ccEEecCCCc-cccccccccCCCCCEEECCCC-CCCCCCHhHcCCCCccEEEecCCc
Confidence            9999998765 333332  2678888988887 565442   245788888877765

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.30  E-value=2e-11  Score=123.15  Aligned_cols=53  Identities=15%  Similarity=0.169  Sum_probs=27.7

Q ss_pred             CCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120           36 KSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (430)
Q Consensus        36 ~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c   93 (430)
                      ++|++|+++++.+.....  ..++|++|++++|.++.  ++ .+.++++|++|++++|
T Consensus       111 ~~L~~L~l~~n~l~~l~~--~~~~L~~L~L~~n~l~~--lp-~~~~l~~L~~L~l~~N  163 (454)
T 1jl5_A          111 QSLKSLLVDNNNLKALSD--LPPLLEYLGVSNNQLEK--LP-ELQNSSFLKIIDVDNN  163 (454)
T ss_dssp             TTCCEEECCSSCCSCCCS--CCTTCCEEECCSSCCSS--CC-CCTTCTTCCEEECCSS
T ss_pred             CCCcEEECCCCccCcccC--CCCCCCEEECcCCCCCC--Cc-ccCCCCCCCEEECCCC
Confidence            556666666654433111  11466666666665543  22 2555666666666665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.30  E-value=6.5e-12  Score=117.66  Aligned_cols=182  Identities=20%  Similarity=0.185  Sum_probs=106.2

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~   95 (430)
                      ++.+......+|..+.  +++++|+++++.+..  +..+.++++|++|+|++|.++.-. ...+.++++|++|++++|..
T Consensus        21 l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~-~~~~~~l~~L~~L~l~~n~l   97 (270)
T 2o6q_A           21 VDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP-AGIFKELKNLETLWVTDNKL   97 (270)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC-TTTTSSCTTCCEEECCSSCC
T ss_pred             EEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC-hhhhcCCCCCCEEECCCCcC
Confidence            4455556777887654  689999999987654  356889999999999999875321 23457889999999998752


Q ss_pred             --CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHH-HHhcC
Q 014120           96 --LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY-NQISE  172 (430)
Q Consensus        96 --l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~-~l~~~  172 (430)
                        +..-.+.++++|++|+++++.  +..+.                  ...+.++++|++|++++|.++.  ++ ..+..
T Consensus        98 ~~~~~~~~~~l~~L~~L~l~~n~--l~~~~------------------~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~  155 (270)
T 2o6q_A           98 QALPIGVFDQLVNLAELRLDRNQ--LKSLP------------------PRVFDSLTKLTYLSLGYNELQS--LPKGVFDK  155 (270)
T ss_dssp             CCCCTTTTTTCSSCCEEECCSSC--CCCCC------------------TTTTTTCTTCCEEECCSSCCCC--CCTTTTTT
T ss_pred             CcCCHhHcccccCCCEEECCCCc--cCeeC------------------HHHhCcCcCCCEEECCCCcCCc--cCHhHccC
Confidence              222224567888888888764  11110                  1224455555555555555532  11 12344


Q ss_pred             CCccceeccccccccccccc----cccccceEeccccccccccc---c-cCCCcceEEecce
Q 014120          173 LPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNY  226 (430)
Q Consensus       173 ~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~  226 (430)
                      +++|+.|+++++. +..++.    ..++|+.|+++++ .++.+.   + ..++|+.+...++
T Consensus       156 l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          156 LTSLKELRLYNNQ-LKRVPEGAFDKLTELKTLKLDNN-QLKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             CcccceeEecCCc-CcEeChhHhccCCCcCEEECCCC-cCCcCCHHHhccccCCCEEEecCC
Confidence            5555555555432 222221    1345566666555 444332   1 2345555554443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.29  E-value=3.5e-12  Score=120.31  Aligned_cols=188  Identities=17%  Similarity=0.104  Sum_probs=136.4

Q ss_pred             CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeec-CChHHHHHHhcCCCCcc
Q 014120           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIE   86 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le   86 (430)
                      ..+++|++  +++....+|. .+..+++|++|+++++.+..  +..+.++++|++|+|++|. ++... +..+..+++|+
T Consensus        32 ~~l~~L~l--~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~-~~~~~~l~~L~  108 (285)
T 1ozn_A           32 AASQRIFL--HGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVD-PATFHGLGRLH  108 (285)
T ss_dssp             TTCSEEEC--TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCC-TTTTTTCTTCC
T ss_pred             CCceEEEe--eCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccC-HHHhcCCcCCC
Confidence            45666554  4455667775 46679999999999987653  5678899999999999997 54321 34567899999


Q ss_pred             EEEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeE---e-eccceeEEEeecCCCC--ceeccCCCCcCceEEccC
Q 014120           87 YININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVY---I-NGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDG  158 (430)
Q Consensus        87 ~L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~---i-~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~  158 (430)
                      +|++++|..  +..-.+.++++|++|++++|.  +..+.   + ..++|++|++++..+.  ....+.++++|+.|++++
T Consensus       109 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  186 (285)
T 1ozn_A          109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (285)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEECCCCcCCEECHhHhhCCcCCCEEECCCCc--ccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCC
Confidence            999999853  222235678999999999875  33322   2 3689999999984333  123478899999999999


Q ss_pred             CCCChHHHHHHhcCCCccceeccccccccccccc----cccccceEecccc
Q 014120          159 LSITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERC  205 (430)
Q Consensus       159 ~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c  205 (430)
                      |.+++ ..+..+.++++|+.|+++++. +..++.    ..++|+.|+++++
T Consensus       187 n~l~~-~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~N  235 (285)
T 1ozn_A          187 NRVAH-VHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN  235 (285)
T ss_dssp             SCCCE-ECTTTTTTCTTCCEEECCSSC-CSCCCHHHHTTCTTCCEEECCSS
T ss_pred             Ccccc-cCHhHccCcccccEeeCCCCc-CCcCCHHHcccCcccCEEeccCC
Confidence            99854 224567789999999998764 333332    2578999999887

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.28  E-value=1.8e-11  Score=126.66  Aligned_cols=143  Identities=13%  Similarity=0.060  Sum_probs=86.4

Q ss_pred             CCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccc---c---ccccccceEeccccccccc-cc----cc
Q 014120          146 SSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI---N---ISSPRLKELVFERCEELVE-FE----LD  214 (430)
Q Consensus       146 ~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~---~~~~~L~~L~l~~c~~L~~-~~----i~  214 (430)
                      ..+++|++|++++|.+++ .++..+.++++|+.|+++++. +..+   +   ...++|+.|+++++ .++. +.    -.
T Consensus       350 ~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~  426 (562)
T 3a79_B          350 PSPSSFTFLNFTQNVFTD-SVFQGCSTLKRLQTLILQRNG-LKNFFKVALMTKNMSSLETLDVSLN-SLNSHAYDRTCAW  426 (562)
T ss_dssp             SSCCCCCEEECCSSCCCT-TTTTTCCSCSSCCEEECCSSC-CCBTTHHHHTTTTCTTCCEEECTTS-CCBSCCSSCCCCC
T ss_pred             cCCCCceEEECCCCcccc-chhhhhcccCCCCEEECCCCC-cCCcccchhhhcCCCCCCEEECCCC-cCCCccChhhhcC
Confidence            567899999999999864 344566889999999998764 3332   2   13578999999998 5554 33    22


Q ss_pred             CCCcceEEecceeeEEeccccccceeEEEeeecCCchHHHHHHHHHHhhC-CCCceEeeeEeeccceecCcccccccCCC
Q 014120          215 TPNLSIFKCFNYVESFSSNALALSQTLLCFISHPVDNEWYLKFIKLLARF-NLCSNVLNLQCNHEAVLIPRELREILCPP  293 (430)
Q Consensus       215 ~p~L~~~~~~~~~~~~~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l-~~l~~L~L~~~~~~~~~i~~~l~~~~~p~  293 (430)
                      .++|+.+...++. +.                           ......+ .+++.|++..+...  .+|....     .
T Consensus       427 l~~L~~L~l~~n~-l~---------------------------~~~~~~l~~~L~~L~L~~N~l~--~ip~~~~-----~  471 (562)
T 3a79_B          427 AESILVLNLSSNM-LT---------------------------GSVFRCLPPKVKVLDLHNNRIM--SIPKDVT-----H  471 (562)
T ss_dssp             CTTCCEEECCSSC-CC---------------------------GGGGSSCCTTCSEEECCSSCCC--CCCTTTT-----S
T ss_pred             cccCCEEECCCCC-CC---------------------------cchhhhhcCcCCEEECCCCcCc--ccChhhc-----C
Confidence            3566666555442 00                           0111223 46776666655433  3444332     3


Q ss_pred             CCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeE
Q 014120          294 LTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI  332 (430)
Q Consensus       294 ~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i  332 (430)
                      +++|+.|.+..+.      +..+-+..+..+|+|+.|.+
T Consensus       472 l~~L~~L~L~~N~------l~~l~~~~~~~l~~L~~L~l  504 (562)
T 3a79_B          472 LQALQELNVASNQ------LKSVPDGVFDRLTSLQYIWL  504 (562)
T ss_dssp             SCCCSEEECCSSC------CCCCCTTSTTTCTTCCCEEC
T ss_pred             CCCCCEEECCCCC------CCCCCHHHHhcCCCCCEEEe
Confidence            4677777776653      11111123577788888887

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.28  E-value=8e-12  Score=114.72  Aligned_cols=191  Identities=14%  Similarity=0.064  Sum_probs=121.4

Q ss_pred             cccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeec-CChHHHHHHhcCCCCccEEEeeeCCCCCccc-
Q 014120           25 IYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSLQ-  100 (430)
Q Consensus        25 ~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~-  100 (430)
                      ...+|. +  ..+|++|+++++.+..  +..+.++++|++|+|++|. ++.-. ...+.++++|++|++++|..++.+. 
T Consensus        23 l~~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~l~~~n~l~~i~~   98 (239)
T 2xwt_C           23 IQRIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLE-SHSFYNLSKVTHIEIRNTRNLTYIDP   98 (239)
T ss_dssp             CSSCCC-C--CTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEEC-TTTEESCTTCCEEEEEEETTCCEECT
T ss_pred             ccccCC-C--CCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeC-HhHcCCCcCCcEEECCCCCCeeEcCH
Confidence            556675 2  3478899998877654  3467888999999999886 64321 2246788899999998865655543 


Q ss_pred             --cCCCCCcCEEEcCCCc-CCceEeEeecccee---EEEeecC-CCC--ceeccCCCCcCc-eEEccCCCCChHHHHH-H
Q 014120          101 --LLGLNKLKEIKLDSNR-CGLERVYINGVNVH---SVDIKVY-LEP--CEVNVSSCKNLT-HLRLDGLSITDKWLYN-Q  169 (430)
Q Consensus       101 --l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~---~L~l~~~-~~~--~~~~~~~l~~L~-~L~L~~~~i~~~~l~~-l  169 (430)
                        +.++++|++|++++|. ..++. ....++|+   +|++++. .+.  ....+.++++|+ .|++++|.++  .++. .
T Consensus        99 ~~f~~l~~L~~L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~--~i~~~~  175 (239)
T 2xwt_C           99 DALKELPLLKFLGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT--SVQGYA  175 (239)
T ss_dssp             TSEECCTTCCEEEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC--EECTTT
T ss_pred             HHhCCCCCCCEEeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc--ccCHhh
Confidence              4467888888888764 22222 11244555   7777763 332  123467788888 8888888874  3333 2


Q ss_pred             hcCCCccceeccccccccccccc----cc-cccceEecccccccccccc-cCCCcceEEec
Q 014120          170 ISELPFLEYLALHYCMKLRSINI----SS-PRLKELVFERCEELVEFEL-DTPNLSIFKCF  224 (430)
Q Consensus       170 ~~~~p~Le~L~L~~c~~l~~l~~----~~-~~L~~L~l~~c~~L~~~~i-~~p~L~~~~~~  224 (430)
                      +.. +.|+.|++++++.+..++.    .. ++|+.|+++++ .++.+.. ..++++.+...
T Consensus       176 ~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~  234 (239)
T 2xwt_C          176 FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIAR  234 (239)
T ss_dssp             TTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECT
T ss_pred             cCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeecc
Confidence            333 7888888887765555533    13 67888888876 5555432 23455555443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.28  E-value=1.3e-12  Score=135.09  Aligned_cols=171  Identities=13%  Similarity=0.112  Sum_probs=88.7

Q ss_pred             CCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCC
Q 014120           28 LPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNK  106 (430)
Q Consensus        28 LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~  106 (430)
                      .|..+..+++|+.|+++++.+.. |..+..+ +|++|++++|.++.  ++.  ..+++|+.|++++|..........+++
T Consensus       274 ~~~~~~~l~~L~~L~l~~~~l~~l~~~~~~~-~L~~L~l~~n~~~~--l~~--~~l~~L~~L~l~~n~~~~~~~~~~~~~  348 (570)
T 2z63_A          274 IIDLFNCLTNVSSFSLVSVTIERVKDFSYNF-GWQHLELVNCKFGQ--FPT--LKLKSLKRLTFTSNKGGNAFSEVDLPS  348 (570)
T ss_dssp             STTTTGGGTTCSEEEEESCEECSCCBCCSCC-CCSEEEEESCBCSS--CCB--CBCSSCCEEEEESCBSCCBCCCCBCTT
T ss_pred             chhhhcCcCcccEEEecCccchhhhhhhccC-CccEEeeccCcccc--cCc--ccccccCEEeCcCCccccccccccCCC
Confidence            45555566777777777765433 4445556 77777777776642  111  356777777777766544433345677


Q ss_pred             cCEEEcCCCcCCceEeE------eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCcccee
Q 014120          107 LKEIKLDSNRCGLERVY------INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYL  179 (430)
Q Consensus       107 L~~L~l~~c~~~l~~l~------i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L  179 (430)
                      |++|++++|.  +....      ..+++|++|++++.... ....+.++++|+.|++++|.+.+......+.++++|+.|
T Consensus       349 L~~L~l~~n~--l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  426 (570)
T 2z63_A          349 LEFLDLSRNG--LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL  426 (570)
T ss_dssp             CCEEECCSSC--CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEE
T ss_pred             CCEEeCcCCc--cCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEE
Confidence            7777777654  22211      12455565555552111 112245555666666665554321111234455556666


Q ss_pred             ccccccccccccc---cccccceEecccc
Q 014120          180 ALHYCMKLRSINI---SSPRLKELVFERC  205 (430)
Q Consensus       180 ~L~~c~~l~~l~~---~~~~L~~L~l~~c  205 (430)
                      ++++|......+.   ..++|+.|++++|
T Consensus       427 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n  455 (570)
T 2z63_A          427 DISHTHTRVAFNGIFNGLSSLEVLKMAGN  455 (570)
T ss_dssp             ECTTSCCEECCTTTTTTCTTCCEEECTTC
T ss_pred             eCcCCcccccchhhhhcCCcCcEEECcCC
Confidence            5555432222211   1344555555554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.24  E-value=1.7e-11  Score=124.74  Aligned_cols=201  Identities=22%  Similarity=0.161  Sum_probs=140.7

Q ss_pred             CceEEEEEecCCccccCC-ccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120           12 NVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~~LP-~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L   90 (430)
                      +++.|+|  +++....+| ..+..+++|++|+|++|.+.....+.++++|++|+|++|.+++      +...++|+.|++
T Consensus        35 ~L~~L~L--s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~------l~~~~~L~~L~L  106 (487)
T 3oja_A           35 NVKELDL--SGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHA  106 (487)
T ss_dssp             GCCEEEC--CSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEECTTCTTCCEEECCSSEEEE------EEECTTCCEEEC
T ss_pred             CccEEEe--eCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcccccCCCCCEEEecCCcCCC------CCCCCCcCEEEC
Confidence            4555554  445566665 4677799999999999987642238899999999999998854      224489999999


Q ss_pred             eeCCCCCccccCCCCCcCEEEcCCCc-CCceEeEe-eccceeEEEeecCCCC--ceeccC-CCCcCceEEccCCCCChHH
Q 014120           91 NNCPGLKSLQLLGLNKLKEIKLDSNR-CGLERVYI-NGVNVHSVDIKVYLEP--CEVNVS-SCKNLTHLRLDGLSITDKW  165 (430)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~-~~l~~l~i-~~p~L~~L~l~~~~~~--~~~~~~-~l~~L~~L~L~~~~i~~~~  165 (430)
                      ++|. +..+....+++|+.|++++|. .++.+..+ .+++|++|++++..+.  .+..+. .+++|+.|+|++|.+++. 
T Consensus       107 ~~N~-l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~-  184 (487)
T 3oja_A          107 ANNN-ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-  184 (487)
T ss_dssp             CSSC-CCCEEECCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-
T ss_pred             cCCc-CCCCCccccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc-
Confidence            9975 444444557899999999886 23322222 3689999999984333  123443 789999999999999652 


Q ss_pred             HHHHhcCCCccceeccccccccccccc---cccccceEeccccccccccc--c-cCCCcceEEecce
Q 014120          166 LYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE--L-DTPNLSIFKCFNY  226 (430)
Q Consensus       166 l~~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~--i-~~p~L~~~~~~~~  226 (430)
                       +. ...++.|+.|+++++. +..++.   ..++|+.|+++++ .++.+.  + ..++|..+.+.|+
T Consensus       185 -~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~l~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~l~~N  247 (487)
T 3oja_A          185 -KG-QVVFAKLKTLDLSSNK-LAFMGPEFQSAAGVTWISLRNN-KLVLIEKALRFSQNLEHFDLRGN  247 (487)
T ss_dssp             -EC-CCCCTTCCEEECCSSC-CCEECGGGGGGTTCSEEECTTS-CCCEECTTCCCCTTCCEEECTTC
T ss_pred             -cc-cccCCCCCEEECCCCC-CCCCCHhHcCCCCccEEEecCC-cCcccchhhccCCCCCEEEcCCC
Confidence             21 2358999999998765 333332   2578999999998 566543  2 2356666666554

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.23  E-value=2.4e-12  Score=122.71  Aligned_cols=208  Identities=17%  Similarity=0.143  Sum_probs=147.3

Q ss_pred             CCceEEEEEecCCccccCCccc-cCCCCccEEEEcCccCCC----CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCc
Q 014120           11 SNVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP----PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLI   85 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l-~~~~~L~~L~Ls~~~~~~----~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~L   85 (430)
                      .++++|+|  +++....+|..+ .++++|++|+++++.+..    +..+.++++|++|+|++|.++.  ++..+.++++|
T Consensus        28 ~~l~~L~L--~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~--l~~~~~~l~~L  103 (306)
T 2z66_A           28 SSATRLEL--ESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT--MSSNFLGLEQL  103 (306)
T ss_dssp             TTCCEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE--EEEEEETCTTC
T ss_pred             CCCCEEEC--CCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc--ChhhcCCCCCC
Confidence            45666655  445677888775 569999999999987652    2345578999999999998743  22336789999


Q ss_pred             cEEEeeeCCC--CCc-cccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC---ceeccCCCCcCceEE
Q 014120           86 EYININNCPG--LKS-LQLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLR  155 (430)
Q Consensus        86 e~L~L~~c~~--l~~-l~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~---~~~~~~~l~~L~~L~  155 (430)
                      ++|++++|..  +.. -.+.++++|++|++++|.  +....    -..++|++|++++....   .+..+..+++|+.|+
T Consensus       104 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~  181 (306)
T 2z66_A          104 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH--TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLD  181 (306)
T ss_dssp             CEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC--CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEE
T ss_pred             CEEECCCCcccccccchhhhhccCCCEEECCCCc--CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEE
Confidence            9999998753  222 235567999999999875  32221    13689999999883221   235678899999999


Q ss_pred             ccCCCCChHHHHHHhcCCCccceeccccccccccccc----cccccceEeccccccccccc---c-cC-CCcceEEecce
Q 014120          156 LDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---L-DT-PNLSIFKCFNY  226 (430)
Q Consensus       156 L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i-~~-p~L~~~~~~~~  226 (430)
                      +++|.+++ ..+..+.++++|+.|+++++.. ..++.    ..++|+.|+++++ .++...   + .. ++|+++...++
T Consensus       182 Ls~n~l~~-~~~~~~~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~L~L~~N  258 (306)
T 2z66_A          182 LSQCQLEQ-LSPTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQN  258 (306)
T ss_dssp             CTTSCCCE-ECTTTTTTCTTCCEEECTTSCC-SBCCSGGGTTCTTCCEEECTTS-CCCBCSSSSCCCCCTTCCEEECTTC
T ss_pred             CCCCCcCC-cCHHHhcCCCCCCEEECCCCcc-CccChhhccCcccCCEeECCCC-CCcccCHHHHHhhhccCCEEEccCC
Confidence            99999854 2244567899999999987653 22222    2578999999998 555432   2 23 37888877665


Q ss_pred             e
Q 014120          227 V  227 (430)
Q Consensus       227 ~  227 (430)
                      .
T Consensus       259 ~  259 (306)
T 2z66_A          259 D  259 (306)
T ss_dssp             C
T ss_pred             C
Confidence            3

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.23  E-value=7.9e-12  Score=117.28  Aligned_cols=203  Identities=20%  Similarity=0.192  Sum_probs=134.5

Q ss_pred             EecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC-
Q 014120           19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG-   95 (430)
Q Consensus        19 ~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~-   95 (430)
                      +........+|..+.  ++|++|+++++.+..  +..+.++++|++|+|++|.++... ...+.++++|++|++++|.. 
T Consensus        13 ~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~   89 (276)
T 2z62_A           13 QCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNPIQ   89 (276)
T ss_dssp             ECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCCCC
T ss_pred             EecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccC-HHHccCCcCCCEEECCCCccC
Confidence            333445667786653  579999999987654  347888999999999999875421 23467889999999998753 


Q ss_pred             -CCccccCCCCCcCEEEcCCCc-CCceEeEe-eccceeEEEeecCCCC---ceeccCCCCcCceEEccCCCCCh---HHH
Q 014120           96 -LKSLQLLGLNKLKEIKLDSNR-CGLERVYI-NGVNVHSVDIKVYLEP---CEVNVSSCKNLTHLRLDGLSITD---KWL  166 (430)
Q Consensus        96 -l~~l~l~~~~~L~~L~l~~c~-~~l~~l~i-~~p~L~~L~l~~~~~~---~~~~~~~l~~L~~L~L~~~~i~~---~~l  166 (430)
                       +..-.+.++++|++|++++|. ..+....+ ..++|++|++++..+.   .+..+.++++|+.|++++|.+++   ..+
T Consensus        90 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~  169 (276)
T 2z62_A           90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL  169 (276)
T ss_dssp             EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGG
T ss_pred             ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHh
Confidence             222235677899999998875 22222222 3689999999883322   23567889999999999999865   122


Q ss_pred             HHHhcCCCccc-eeccccccccccccc---cccccceEeccccccccccc---c-cCCCcceEEeccee
Q 014120          167 YNQISELPFLE-YLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV  227 (430)
Q Consensus       167 ~~l~~~~p~Le-~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~  227 (430)
                      .. +..++.|. .|+++++. +..++.   ...+|+.|+++++ .++.+.   + ..++|+.+...++.
T Consensus       170 ~~-l~~L~~l~l~L~ls~n~-l~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~N~  235 (276)
T 2z62_A          170 RV-LHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTN-QLKSVPDGIFDRLTSLQKIWLHTNP  235 (276)
T ss_dssp             HH-HHTCTTCCEEEECCSSC-CCEECTTSSCSCCEEEEECCSS-CCSCCCTTTTTTCCSCCEEECCSSC
T ss_pred             hh-hhhccccceeeecCCCc-ccccCccccCCCcccEEECCCC-ceeecCHhHhcccccccEEEccCCc
Confidence            22 22333333 67776554 333322   2347999999998 566553   2 35777777766553

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.22  E-value=2e-11  Score=111.98  Aligned_cols=189  Identities=13%  Similarity=0.087  Sum_probs=132.5

Q ss_pred             CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCcc-CCC--CCCCCCCCCCCEEEEee-ecCChHHHHHHhcCCCCc
Q 014120           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCK-LEP--PRSTVTLFSLRKLCLSF-VHVDDEVIRDMVAGCPLI   85 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~-~~~--~~~~~~l~~L~~L~Ls~-~~~~~~~l~~l~~~~p~L   85 (430)
                      ..++++++..  +....+|+ .+..+++|++|+++++. +..  +..+.++++|++|+|++ |.++.-. ...+.++++|
T Consensus        31 ~~l~~L~l~~--n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~~L  107 (239)
T 2xwt_C           31 PSTQTLKLIE--THLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYID-PDALKELPLL  107 (239)
T ss_dssp             TTCCEEEEES--CCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEEC-TTSEECCTTC
T ss_pred             CcccEEEEeC--CcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcC-HHHhCCCCCC
Confidence            3566666654  55777776 45679999999999986 543  35788999999999998 7775321 2356789999


Q ss_pred             cEEEeeeCCCCCccccCCCCCcC---EEEcCCCcCCceEeEe----ecccee-EEEeecCCCC-c-eeccCCCCcCceEE
Q 014120           86 EYININNCPGLKSLQLLGLNKLK---EIKLDSNRCGLERVYI----NGVNVH-SVDIKVYLEP-C-EVNVSSCKNLTHLR  155 (430)
Q Consensus        86 e~L~L~~c~~l~~l~l~~~~~L~---~L~l~~c~~~l~~l~i----~~p~L~-~L~l~~~~~~-~-~~~~~~l~~L~~L~  155 (430)
                      ++|++++|..-....+.++++|+   .|++++|. .+..+..    .+++|+ ++++++..+. . ...+.. ++|+.|+
T Consensus       108 ~~L~l~~n~l~~lp~~~~l~~L~~L~~L~l~~N~-~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~  185 (239)
T 2xwt_C          108 KFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNP-YMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVY  185 (239)
T ss_dssp             CEEEEEEECCCSCCCCTTCCBCCSEEEEEEESCT-TCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEE
T ss_pred             CEEeCCCCCCccccccccccccccccEEECCCCc-chhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEE
Confidence            99999998532211255667777   99999874 4554432    368899 9999883332 1 123344 7899999


Q ss_pred             ccCCC-CChHHHHHHhcCC-Cccceecccccccccccccc-ccccceEeccccc
Q 014120          156 LDGLS-ITDKWLYNQISEL-PFLEYLALHYCMKLRSINIS-SPRLKELVFERCE  206 (430)
Q Consensus       156 L~~~~-i~~~~l~~l~~~~-p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c~  206 (430)
                      +++|. ++. ..+..+.++ +.|+.|+++++ .+..++.. .++|+.|.+.++.
T Consensus       186 L~~n~~l~~-i~~~~~~~l~~~L~~L~l~~N-~l~~l~~~~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          186 LNKNKYLTV-IDKDAFGGVYSGPSLLDVSQT-SVTALPSKGLEHLKELIARNTW  237 (239)
T ss_dssp             CTTCTTCCE-ECTTTTTTCSBCCSEEECTTC-CCCCCCCTTCTTCSEEECTTC-
T ss_pred             cCCCCCccc-CCHHHhhccccCCcEEECCCC-ccccCChhHhccCceeeccCcc
Confidence            99994 742 113356778 99999999874 34555543 6788999888774

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.22  E-value=3.2e-11  Score=114.32  Aligned_cols=163  Identities=18%  Similarity=0.139  Sum_probs=86.7

Q ss_pred             CCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcC
Q 014120           34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLD  113 (430)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~  113 (430)
                      .+++|+.|+++++.+.....+..+++|++|+|++|.+++.  .. +.++++|++|++++|..-..-.+.++++|++|+++
T Consensus        44 ~l~~L~~L~l~~~~i~~~~~~~~l~~L~~L~L~~n~l~~~--~~-l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~  120 (291)
T 1h6t_A           44 ELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--KP-LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLE  120 (291)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCGGGGTTCTTCCEEECT
T ss_pred             hcCcccEEEccCCCcccChhHhcCCCCCEEEccCCccCCC--cc-cccCCCCCEEECCCCcCCCChhhccCCCCCEEECC
Confidence            3556666666666554433456666677777766666432  11 55666677776666542211224455666666666


Q ss_pred             CCcCCceEeE--eeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccccccc
Q 014120          114 SNRCGLERVY--INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN  191 (430)
Q Consensus       114 ~c~~~l~~l~--i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~  191 (430)
                      +|.  +..+.  ..+++|+.|++++..+.....+..+++|+.|++++|.+++.  +. +..+++|+.|+++++. +..++
T Consensus       121 ~n~--i~~~~~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~N~l~~~--~~-l~~l~~L~~L~L~~N~-i~~l~  194 (291)
T 1h6t_A          121 HNG--ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH-ISDLR  194 (291)
T ss_dssp             TSC--CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCBCG
T ss_pred             CCc--CCCChhhcCCCCCCEEEccCCcCCcchhhccCCCCCEEEccCCccccc--hh-hcCCCccCEEECCCCc-CCCCh
Confidence            654  11111  12455555555552222123455666677777777666431  11 5566667777666542 22222


Q ss_pred             c--cccccceEecccc
Q 014120          192 I--SSPRLKELVFERC  205 (430)
Q Consensus       192 ~--~~~~L~~L~l~~c  205 (430)
                      .  ..++|+.|+++++
T Consensus       195 ~l~~l~~L~~L~l~~n  210 (291)
T 1h6t_A          195 ALAGLKNLDVLELFSQ  210 (291)
T ss_dssp             GGTTCTTCSEEEEEEE
T ss_pred             hhccCCCCCEEECcCC
Confidence            2  1345666666655

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.21  E-value=1e-11  Score=128.33  Aligned_cols=224  Identities=16%  Similarity=0.155  Sum_probs=153.6

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L   90 (430)
                      .+++.+++..  +....+|..+..+ +|++|++++|.+..- ....+++|++|++++|.+.... .  ...+|+|++|++
T Consensus       282 ~~L~~L~l~~--~~l~~l~~~~~~~-~L~~L~l~~n~~~~l-~~~~l~~L~~L~l~~n~~~~~~-~--~~~~~~L~~L~l  354 (570)
T 2z63_A          282 TNVSSFSLVS--VTIERVKDFSYNF-GWQHLELVNCKFGQF-PTLKLKSLKRLTFTSNKGGNAF-S--EVDLPSLEFLDL  354 (570)
T ss_dssp             TTCSEEEEES--CEECSCCBCCSCC-CCSEEEEESCBCSSC-CBCBCSSCCEEEEESCBSCCBC-C--CCBCTTCCEEEC
T ss_pred             CcccEEEecC--ccchhhhhhhccC-CccEEeeccCccccc-CcccccccCEEeCcCCcccccc-c--cccCCCCCEEeC
Confidence            4566666644  4567899888888 999999999876642 2257899999999999874321 1  168899999999


Q ss_pred             eeCCCCC----ccccCCCCCcCEEEcCCCc-CCceEeEeeccceeEEEeecCCC---CceeccCCCCcCceEEccCCCCC
Q 014120           91 NNCPGLK----SLQLLGLNKLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLE---PCEVNVSSCKNLTHLRLDGLSIT  162 (430)
Q Consensus        91 ~~c~~l~----~l~l~~~~~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~---~~~~~~~~l~~L~~L~L~~~~i~  162 (430)
                      ++|..-.    ...+.++++|++|++++|. ..+......+++|++|++++...   +....+.++++|++|++++|.+.
T Consensus       355 ~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~  434 (570)
T 2z63_A          355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR  434 (570)
T ss_dssp             CSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCE
T ss_pred             cCCccCccccccccccccCccCEEECCCCccccccccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCccc
Confidence            9875321    1234567999999999875 12222223478999999887222   11235778899999999999874


Q ss_pred             hHHHHHHhcCCCccceecccccccc-ccccc---cccccceEeccccccccccc---c-cCCCcceEEeccee----e-E
Q 014120          163 DKWLYNQISELPFLEYLALHYCMKL-RSINI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNYV----E-S  229 (430)
Q Consensus       163 ~~~l~~l~~~~p~Le~L~L~~c~~l-~~l~~---~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~~----~-~  229 (430)
                      + ..+..+.++++|+.|++++|... ..++.   ..++|+.|++++| .++.+.   + ..++|+.+...++.    + .
T Consensus       435 ~-~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  512 (570)
T 2z63_A          435 V-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQC-QLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG  512 (570)
T ss_dssp             E-CCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred             c-cchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCC-ccccCChhhhhcccCCCEEeCCCCcCCCCCHH
Confidence            3 23455678999999999887643 23432   2578999999998 566542   2 45888888887764    1 1


Q ss_pred             EeccccccceeEEE
Q 014120          230 FSSNALALSQTLLC  243 (430)
Q Consensus       230 ~~~~~~sL~~v~l~  243 (430)
                      .....++++.+++.
T Consensus       513 ~~~~l~~L~~L~l~  526 (570)
T 2z63_A          513 IFDRLTSLQKIWLH  526 (570)
T ss_dssp             TTTTCTTCCEEECC
T ss_pred             HhhcccCCcEEEec
Confidence            11234566666663

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.21  E-value=2.1e-11  Score=122.96  Aligned_cols=135  Identities=19%  Similarity=0.180  Sum_probs=79.4

Q ss_pred             CceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCC-CCccEEEe
Q 014120           12 NVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGC-PLIEYINI   90 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~-p~Le~L~L   90 (430)
                      .+++++  ++++....+|..   .++|++|+++++.+..-.  ..+++|++|++++|.+++      +... ++|++|++
T Consensus        72 ~l~~L~--l~~~~l~~lp~~---~~~L~~L~l~~n~l~~lp--~~~~~L~~L~l~~n~l~~------l~~~~~~L~~L~L  138 (454)
T 1jl5_A           72 QAHELE--LNNLGLSSLPEL---PPHLESLVASCNSLTELP--ELPQSLKSLLVDNNNLKA------LSDLPPLLEYLGV  138 (454)
T ss_dssp             TCSEEE--CTTSCCSCCCSC---CTTCSEEECCSSCCSSCC--CCCTTCCEEECCSSCCSC------CCSCCTTCCEEEC
T ss_pred             CCCEEE--ecCCccccCCCC---cCCCCEEEccCCcCCccc--cccCCCcEEECCCCccCc------ccCCCCCCCEEEC
Confidence            345544  444456666652   367888888887665411  234788888888887643      1122 57888888


Q ss_pred             eeCCCCCcc-ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120           91 NNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (430)
Q Consensus        91 ~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~  162 (430)
                      ++|.. +.+ .+.++++|++|++++|.  +..+....++|++|++++........++++++|+.|++++|.++
T Consensus       139 ~~n~l-~~lp~~~~l~~L~~L~l~~N~--l~~lp~~~~~L~~L~L~~n~l~~l~~~~~l~~L~~L~l~~N~l~  208 (454)
T 1jl5_A          139 SNNQL-EKLPELQNSSFLKIIDVDNNS--LKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK  208 (454)
T ss_dssp             CSSCC-SSCCCCTTCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSSCCCCTTCTTCCEEECCSSCCS
T ss_pred             cCCCC-CCCcccCCCCCCCEEECCCCc--CcccCCCcccccEEECcCCcCCcCccccCCCCCCEEECCCCcCC
Confidence            87742 222 35566788888887764  22232234577777776622221124556666666666666553

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.21  E-value=2.2e-11  Score=116.55  Aligned_cols=176  Identities=15%  Similarity=0.053  Sum_probs=101.2

Q ss_pred             CCCCccEEEEcCccCCC--CCCC--CCCCCCCEEEEeeecCChH--HHHHHhc-CCCCccEEEeeeCCC--CCccccCCC
Q 014120           34 YLKSIYVLDFEFCKLEP--PRST--VTLFSLRKLCLSFVHVDDE--VIRDMVA-GCPLIEYININNCPG--LKSLQLLGL  104 (430)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~--~~~~--~~l~~L~~L~Ls~~~~~~~--~l~~l~~-~~p~Le~L~L~~c~~--l~~l~l~~~  104 (430)
                      .+++|++|+|+++.+..  |..+  ..+++|++|+|++|.+++.  .+..+.. .+++|++|++++|..  +..-.+.++
T Consensus        93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l  172 (312)
T 1wwl_A           93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF  172 (312)
T ss_dssp             TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred             CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence            56777777777766542  3333  6777777777777776432  1222111 126777777777643  111224455


Q ss_pred             CCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh--HHHHHHhcCCCccceeccc
Q 014120          105 NKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYLALH  182 (430)
Q Consensus       105 ~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--~~l~~l~~~~p~Le~L~L~  182 (430)
                      ++|++|++++|. ....+               ..+....+.++++|++|++++|.++.  .....++.++++|+.|+++
T Consensus       173 ~~L~~L~Ls~N~-l~~~~---------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls  236 (312)
T 1wwl_A          173 PALSTLDLSDNP-ELGER---------------GLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLS  236 (312)
T ss_dssp             SSCCEEECCSCT-TCHHH---------------HHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECT
T ss_pred             CCCCEEECCCCC-cCcch---------------HHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECC
Confidence            666666666653 10000               00111233778889999999888864  2233466778889999988


Q ss_pred             cccccccccc----cccccceEecccccccccccccC-CCcceEEecce
Q 014120          183 YCMKLRSINI----SSPRLKELVFERCEELVEFELDT-PNLSIFKCFNY  226 (430)
Q Consensus       183 ~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~i~~-p~L~~~~~~~~  226 (430)
                      ++.--...+.    ..++|+.|+++++ .++.+.-.. ++|+.+...++
T Consensus       237 ~N~l~~~~~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~~L~~L~Ls~N  284 (312)
T 1wwl_A          237 HNSLRDAAGAPSCDWPSQLNSLNLSFT-GLKQVPKGLPAKLSVLDLSYN  284 (312)
T ss_dssp             TSCCCSSCCCSCCCCCTTCCEEECTTS-CCSSCCSSCCSEEEEEECCSS
T ss_pred             CCcCCcccchhhhhhcCCCCEEECCCC-ccChhhhhccCCceEEECCCC
Confidence            7653332211    1468888888887 566543111 45666555544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.20  E-value=1.6e-11  Score=120.98  Aligned_cols=93  Identities=13%  Similarity=0.114  Sum_probs=61.0

Q ss_pred             ccccCCccccCCCCccEEEEcCccCCC--C----CCCCCCCCCCEEEEeeecCC---h---HH---HHHHhcCCCCccEE
Q 014120           24 RIYNLPQIVFYLKSIYVLDFEFCKLEP--P----RSTVTLFSLRKLCLSFVHVD---D---EV---IRDMVAGCPLIEYI   88 (430)
Q Consensus        24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~----~~~~~l~~L~~L~Ls~~~~~---~---~~---l~~l~~~~p~Le~L   88 (430)
                      ....++..+..+++|++|+|++|.+..  +    ..+.++++|++|+|++|.+.   +   .+   +...+..+++|++|
T Consensus        20 ~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L   99 (386)
T 2ca6_A           20 DEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTV   99 (386)
T ss_dssp             HHHTTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEE
T ss_pred             HHHHHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEE
Confidence            456677777778888888888876543  1    23667888888888887442   1   12   22335678888888


Q ss_pred             EeeeCCCCC----cc--ccCCCCCcCEEEcCCCc
Q 014120           89 NINNCPGLK----SL--QLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        89 ~L~~c~~l~----~l--~l~~~~~L~~L~l~~c~  116 (430)
                      +|++|..-.    .+  .+..+++|++|++++|.
T Consensus       100 ~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~  133 (386)
T 2ca6_A          100 RLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  133 (386)
T ss_dssp             ECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             ECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCC
Confidence            888875321    11  23456778888887764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.20  E-value=1.9e-10  Score=120.21  Aligned_cols=191  Identities=15%  Similarity=0.037  Sum_probs=132.3

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L   90 (430)
                      .+++.|+|.  ++....+|.   .+++|++|+|++|.+..-..  .+++|++|+|++|.++.-  +   ..+++|+.|++
T Consensus        61 ~~L~~L~L~--~N~l~~lp~---~l~~L~~L~Ls~N~l~~lp~--~l~~L~~L~Ls~N~l~~l--~---~~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIP--DNNLTSLPA---LPPELRTLEVSGNQLTSLPV--LPPGLLELSIFSNPLTHL--P---ALPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEEC--SCCCSCCCC---CCTTCCEEEECSCCCSCCCC--CCTTCCEEEECSCCCCCC--C---CCCTTCCEEEC
T ss_pred             CCCcEEEec--CCCCCCCCC---cCCCCCEEEcCCCcCCcCCC--CCCCCCEEECcCCcCCCC--C---CCCCCcCEEEC
Confidence            456666654  456778886   56899999999998765212  789999999999988541  1   26789999999


Q ss_pred             eeCCCCCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHh
Q 014120           91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQI  170 (430)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~  170 (430)
                      ++|. ++.+.. .+++|++|++++|.  +..+....++|+.|++++..+. .+. ..+++|+.|++++|.+++  ++   
T Consensus       129 ~~N~-l~~lp~-~l~~L~~L~Ls~N~--l~~l~~~~~~L~~L~L~~N~l~-~l~-~~~~~L~~L~Ls~N~l~~--l~---  197 (622)
T 3g06_A          129 FGNQ-LTSLPV-LPPGLQELSVSDNQ--LASLPALPSELCKLWAYNNQLT-SLP-MLPSGLQELSVSDNQLAS--LP---  197 (622)
T ss_dssp             CSSC-CSCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCS-CCC-CCCTTCCEEECCSSCCSC--CC---
T ss_pred             CCCC-CCcCCC-CCCCCCEEECcCCc--CCCcCCccCCCCEEECCCCCCC-CCc-ccCCCCcEEECCCCCCCC--CC---
Confidence            9874 444433 35899999999875  3333334578888888874333 111 456889999999998853  22   


Q ss_pred             cCCCccceeccccccccccccccccccceEecccccccccccccCCCcceEEecce
Q 014120          171 SELPFLEYLALHYCMKLRSINISSPRLKELVFERCEELVEFELDTPNLSIFKCFNY  226 (430)
Q Consensus       171 ~~~p~Le~L~L~~c~~l~~l~~~~~~L~~L~l~~c~~L~~~~i~~p~L~~~~~~~~  226 (430)
                      ...++|+.|++++|. +..++...++|+.|++++| .++.+.-..++|+.+...++
T Consensus       198 ~~~~~L~~L~L~~N~-l~~l~~~~~~L~~L~Ls~N-~L~~lp~~l~~L~~L~Ls~N  251 (622)
T 3g06_A          198 TLPSELYKLWAYNNR-LTSLPALPSGLKELIVSGN-RLTSLPVLPSELKELMVSGN  251 (622)
T ss_dssp             CCCTTCCEEECCSSC-CSSCCCCCTTCCEEECCSS-CCSCCCCCCTTCCEEECCSS
T ss_pred             CccchhhEEECcCCc-ccccCCCCCCCCEEEccCC-ccCcCCCCCCcCcEEECCCC
Confidence            235788888887653 4555655678888888887 66665544466666665544

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.20  E-value=2.4e-11  Score=117.20  Aligned_cols=207  Identities=19%  Similarity=0.145  Sum_probs=125.1

Q ss_pred             CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      .+++.|+  +.++....+|+ .+..+++|++|+++++.+..  |..+.++++|++|+|++|.++.  ++..  ..++|++
T Consensus        54 ~~l~~L~--l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~--~~~~L~~  127 (332)
T 2ft3_A           54 PDTTLLD--LQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPPN--LPSSLVE  127 (332)
T ss_dssp             TTCCEEE--CCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCSS--CCTTCCE
T ss_pred             CCCeEEE--CCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCcc--ccccCCE
Confidence            3555555  44455666654 67779999999999987654  4678899999999999998752  1111  1278999


Q ss_pred             EEeeeCCC--CCccccCCCCCcCEEEcCCCc-CC--ceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120           88 ININNCPG--LKSLQLLGLNKLKEIKLDSNR-CG--LERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (430)
Q Consensus        88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~-~~--l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~  162 (430)
                      |++++|..  +..-.+.++++|++|++++|. ..  .....+...+|++|++++.... .....-.++|+.|++++|.++
T Consensus       128 L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~L~~L~l~~n~l~-~l~~~~~~~L~~L~l~~n~i~  206 (332)
T 2ft3_A          128 LRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLPETLNELHLDHNKIQ  206 (332)
T ss_dssp             EECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSCCCSCCBCCSSBCS-SCCSSSCSSCSCCBCCSSCCC
T ss_pred             EECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCCccCEEECcCCCCC-ccCccccCCCCEEECCCCcCC
Confidence            99998753  222235667899999998875 10  1111112226666666662221 011111257777777777764


Q ss_pred             hHHHHHHhcCCCccceeccccccccccccc----cccccceEeccccccccccc---ccCCCcceEEeccee
Q 014120          163 DKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV  227 (430)
Q Consensus       163 ~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~~  227 (430)
                      +. .+..+.++++|+.|+++++.- ..++.    ..++|+.|+++++ .++.+.   ...++|+.+...++.
T Consensus       207 ~~-~~~~l~~l~~L~~L~L~~N~l-~~~~~~~~~~l~~L~~L~L~~N-~l~~lp~~l~~l~~L~~L~l~~N~  275 (332)
T 2ft3_A          207 AI-ELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNN-KLSRVPAGLPDLKLLQVVYLHTNN  275 (332)
T ss_dssp             CC-CTTSSTTCTTCSCCBCCSSCC-CCCCTTGGGGCTTCCEEECCSS-CCCBCCTTGGGCTTCCEEECCSSC
T ss_pred             cc-CHHHhcCCCCCCEEECCCCcC-CcCChhHhhCCCCCCEEECCCC-cCeecChhhhcCccCCEEECCCCC
Confidence            31 123455677777777765532 22221    2467777777776 555442   234667777666553

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.20  E-value=3.6e-11  Score=107.11  Aligned_cols=146  Identities=14%  Similarity=0.200  Sum_probs=85.8

Q ss_pred             cCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCC--ccccCCCCCcCEE
Q 014120           33 FYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLK--SLQLLGLNKLKEI  110 (430)
Q Consensus        33 ~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~--~l~l~~~~~L~~L  110 (430)
                      ..+++|++|+++++.+.....+..+++|++|++++|.++.-   ..+..+++|++|++++|..-.  .-.+.++++|++|
T Consensus        41 ~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~l~~n~~~~~---~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L  117 (197)
T 4ezg_A           41 AQMNSLTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY---NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL  117 (197)
T ss_dssp             HHHHTCCEEEEESSCCSCCTTGGGCTTCSEEEEESCCCSCC---GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred             hhcCCccEEeccCCCccChHHHhcCCCCCEEEccCCCCCcc---hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence            34677888888887665523677788888888888866432   246678888888888864321  2234556777888


Q ss_pred             EcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCC-CChHHHHHHhcCCCccceecccccccccc
Q 014120          111 KLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLS-ITDKWLYNQISELPFLEYLALHYCMKLRS  189 (430)
Q Consensus       111 ~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~-i~~~~l~~l~~~~p~Le~L~L~~c~~l~~  189 (430)
                      ++++|.  +..                  .....+..+++|+.|++++|. +++  ++ .+.+++.|+.|++++|. +..
T Consensus       118 ~Ls~n~--i~~------------------~~~~~l~~l~~L~~L~L~~n~~i~~--~~-~l~~l~~L~~L~l~~n~-i~~  173 (197)
T 4ezg_A          118 DISHSA--HDD------------------SILTKINTLPKVNSIDLSYNGAITD--IM-PLKTLPELKSLNIQFDG-VHD  173 (197)
T ss_dssp             ECCSSB--CBG------------------GGHHHHTTCSSCCEEECCSCTBCCC--CG-GGGGCSSCCEEECTTBC-CCC
T ss_pred             EecCCc--cCc------------------HhHHHHhhCCCCCEEEccCCCCccc--cH-hhcCCCCCCEEECCCCC-CcC
Confidence            777764  110                  001334555666666666665 432  22 34556666666665543 222


Q ss_pred             ccc--cccccceEecccc
Q 014120          190 INI--SSPRLKELVFERC  205 (430)
Q Consensus       190 l~~--~~~~L~~L~l~~c  205 (430)
                      ++.  ..++|+.|+++++
T Consensus       174 ~~~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          174 YRGIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CTTGGGCSSCCEEEECBC
T ss_pred             hHHhccCCCCCEEEeeCc
Confidence            211  1355666666554

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.20  E-value=9.1e-12  Score=119.24  Aligned_cols=188  Identities=16%  Similarity=0.153  Sum_probs=118.2

Q ss_pred             hCCceEEEEEecCCccc-cCCccc--cCCCCccEEEEcCccCCC-CCCCCCC-----CCCCEEEEeeecCChHHHHHHhc
Q 014120           10 ASNVKELKLDVGCCRIY-NLPQIV--FYLKSIYVLDFEFCKLEP-PRSTVTL-----FSLRKLCLSFVHVDDEVIRDMVA   80 (430)
Q Consensus        10 ~~~v~~L~L~~~~~~~~-~LP~~l--~~~~~L~~L~Ls~~~~~~-~~~~~~l-----~~L~~L~Ls~~~~~~~~l~~l~~   80 (430)
                      -.++++|+|...  ... .+|..+  ..+++|++|+|+++.+.. |..+..+     ++|++|+|++|.++... ...+.
T Consensus        94 l~~L~~L~L~~n--~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~-~~~~~  170 (312)
T 1wwl_A           94 ISGLQELTLENL--EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS-CEQVR  170 (312)
T ss_dssp             TSCCCEEEEEEE--BCBSCCCCCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCC-TTTCC
T ss_pred             cCCccEEEccCC--cccchhHHHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccch-HHHhc
Confidence            457788877664  343 678776  679999999999987654 4444455     99999999999985431 24577


Q ss_pred             CCCCccEEEeeeCCCCCc------cccCCCCCcCEEEcCCCc-CCceEeE----eeccceeEEEeecCCCCc---eeccC
Q 014120           81 GCPLIEYININNCPGLKS------LQLLGLNKLKEIKLDSNR-CGLERVY----INGVNVHSVDIKVYLEPC---EVNVS  146 (430)
Q Consensus        81 ~~p~Le~L~L~~c~~l~~------l~l~~~~~L~~L~l~~c~-~~l~~l~----i~~p~L~~L~l~~~~~~~---~~~~~  146 (430)
                      ++++|++|++++|.....      ..+.++++|++|++++|. ..+..+.    ...++|++|++++..+..   ...+.
T Consensus       171 ~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  250 (312)
T 1wwl_A          171 VFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCD  250 (312)
T ss_dssp             CCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCC
T ss_pred             cCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhh
Confidence            899999999999874322      223678999999999875 1111111    123677777776632221   12344


Q ss_pred             CCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc--cccccceEecccc
Q 014120          147 SCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI--SSPRLKELVFERC  205 (430)
Q Consensus       147 ~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~--~~~~L~~L~l~~c  205 (430)
                      .+++|+.|++++|.++  .++..+.  ++|+.|++++++ +..++.  ..++|+.|+++++
T Consensus       251 ~l~~L~~L~Ls~N~l~--~ip~~~~--~~L~~L~Ls~N~-l~~~p~~~~l~~L~~L~L~~N  306 (312)
T 1wwl_A          251 WPSQLNSLNLSFTGLK--QVPKGLP--AKLSVLDLSYNR-LDRNPSPDELPQVGNLSLKGN  306 (312)
T ss_dssp             CCTTCCEEECTTSCCS--SCCSSCC--SEEEEEECCSSC-CCSCCCTTTSCEEEEEECTTC
T ss_pred             hcCCCCEEECCCCccC--hhhhhcc--CCceEEECCCCC-CCCChhHhhCCCCCEEeccCC
Confidence            5567777777777764  2332222  567777776543 232222  2355666666554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.19  E-value=3.3e-11  Score=112.81  Aligned_cols=170  Identities=20%  Similarity=0.204  Sum_probs=105.4

Q ss_pred             CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC-C-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~-~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      .++++|+|  +++....+|+ .+..+++|++|+++++.+.. + ..+.++++|++|+|++|.++... ...+.++++|++
T Consensus        37 ~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~  113 (270)
T 2o6q_A           37 ADTKKLDL--QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALP-IGVFDQLVNLAE  113 (270)
T ss_dssp             TTCSEEEC--CSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCC-TTTTTTCSSCCE
T ss_pred             CCCCEEEC--cCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCC-HhHcccccCCCE
Confidence            35666654  4456677776 56679999999999987654 3 45688999999999999885421 235678999999


Q ss_pred             EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHH
Q 014120           88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKW  165 (430)
Q Consensus        88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~  165 (430)
                      |++++|..  +..-.+.++++|++|++++|.  +..+                 + ...+.++++|+.|++++|.++. .
T Consensus       114 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~--l~~~-----------------~-~~~~~~l~~L~~L~L~~n~l~~-~  172 (270)
T 2o6q_A          114 LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE--LQSL-----------------P-KGVFDKLTSLKELRLYNNQLKR-V  172 (270)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CCCC-----------------C-TTTTTTCTTCCEEECCSSCCSC-C
T ss_pred             EECCCCccCeeCHHHhCcCcCCCEEECCCCc--CCcc-----------------C-HhHccCCcccceeEecCCcCcE-e
Confidence            99999753  222235567899999998874  2111                 1 1224455566666666655532 1


Q ss_pred             HHHHhcCCCccceeccccccccccccc----cccccceEecccc
Q 014120          166 LYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERC  205 (430)
Q Consensus       166 l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c  205 (430)
                      .+..+.++++|+.|+++++. +..++.    ..++|+.|+++++
T Consensus       173 ~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N  215 (270)
T 2o6q_A          173 PEGAFDKLTELKTLKLDNNQ-LKRVPEGAFDSLEKLKMLQLQEN  215 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ChhHhccCCCcCEEECCCCc-CCcCCHHHhccccCCCEEEecCC
Confidence            11124455566666665442 222222    1345556665554

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.19  E-value=2.3e-11  Score=114.03  Aligned_cols=163  Identities=18%  Similarity=0.111  Sum_probs=73.5

Q ss_pred             CCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc---ccCCCCCcCEEE
Q 014120           35 LKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL---QLLGLNKLKEIK  111 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~l~~~~~L~~L~  111 (430)
                      +++|+.|+++++.+.....+..+++|++|+|++|.+++-   ..+..+++|++|++++|.. +.+   .+.++++|++|+
T Consensus        40 l~~L~~L~l~~~~i~~~~~l~~l~~L~~L~l~~n~l~~~---~~l~~l~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIANNSDIKSVQGIQYLPNVRYLALGGNKLHDI---SALKELTNLTYLILTGNQL-QSLPNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEECTTSCCCCCTTGGGCTTCCEEECTTSCCCCC---GGGTTCTTCCEEECTTSCC-CCCCTTTTTTCTTCCEEE
T ss_pred             ccceeeeeeCCCCcccccccccCCCCcEEECCCCCCCCc---hhhcCCCCCCEEECCCCcc-CccChhHhcCCcCCCEEE
Confidence            444555555554443333344455555555555544321   1234445555555554421 111   123344555555


Q ss_pred             cCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccc
Q 014120          112 LDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM  185 (430)
Q Consensus       112 l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~  185 (430)
                      +++|.  +..+.    -.+++|++|++++..+.  ....+.++++|+.|++++|.+++ ..+..+.+++.|+.|+++++.
T Consensus       116 L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~N~  192 (272)
T 3rfs_A          116 LVENQ--LQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQ  192 (272)
T ss_dssp             CTTSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSC
T ss_pred             CCCCc--CCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCc-cCHHHhcCCccCCEEECCCCc
Confidence            55443  11111    11345555555442111  11224556666666666666642 112234556666666666543


Q ss_pred             ccccccc----cccccceEecccc
Q 014120          186 KLRSINI----SSPRLKELVFERC  205 (430)
Q Consensus       186 ~l~~l~~----~~~~L~~L~l~~c  205 (430)
                      - ..++.    ..++|+.|+++++
T Consensus       193 l-~~~~~~~~~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          193 L-KSVPDGVFDRLTSLQYIWLHDN  215 (272)
T ss_dssp             C-SCCCTTTTTTCTTCCEEECCSS
T ss_pred             C-CccCHHHHhCCcCCCEEEccCC
Confidence            2 22221    1356666666655

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.18  E-value=5e-11  Score=113.00  Aligned_cols=164  Identities=17%  Similarity=0.155  Sum_probs=123.4

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L   90 (430)
                      ..++.+++  ..+....+| .+..+++|++|+++++.+.....+.++++|++|+|++|.+++-  + .+..+++|++|++
T Consensus        46 ~~L~~L~l--~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIA--NNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--S-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEEC--TTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--G-GGTTCTTCCEEEC
T ss_pred             CcccEEEc--cCCCcccCh-hHhcCCCCCEEEccCCccCCCcccccCCCCCEEECCCCcCCCC--h-hhccCCCCCEEEC
Confidence            34555554  445566776 4778999999999999876633388999999999999998652  2 2789999999999


Q ss_pred             eeCCCCCccccCCCCCcCEEEcCCCcCCceEeE--eeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHH
Q 014120           91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVY--INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN  168 (430)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~--i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~  168 (430)
                      ++|..-..-.+..+++|+.|++++|.  +..+.  ..+++|+.|++++..+.....+..+++|+.|++++|.+++  ++.
T Consensus       120 ~~n~i~~~~~l~~l~~L~~L~l~~n~--l~~~~~l~~l~~L~~L~L~~N~l~~~~~l~~l~~L~~L~L~~N~i~~--l~~  195 (291)
T 1h6t_A          120 EHNGISDINGLVHLPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LRA  195 (291)
T ss_dssp             TTSCCCCCGGGGGCTTCCEEECCSSC--CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--CGG
T ss_pred             CCCcCCCChhhcCCCCCCEEEccCCc--CCcchhhccCCCCCEEEccCCccccchhhcCCCccCEEECCCCcCCC--Chh
Confidence            99853222245667999999999875  33221  2368999999998433322238889999999999999965  333


Q ss_pred             HhcCCCccceecccccc
Q 014120          169 QISELPFLEYLALHYCM  185 (430)
Q Consensus       169 l~~~~p~Le~L~L~~c~  185 (430)
                       +..+++|+.|++++++
T Consensus       196 -l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          196 -LAGLKNLDVLELFSQE  211 (291)
T ss_dssp             -GTTCTTCSEEEEEEEE
T ss_pred             -hccCCCCCEEECcCCc
Confidence             6789999999998764

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.18  E-value=4.5e-11  Score=112.09  Aligned_cols=164  Identities=16%  Similarity=0.137  Sum_probs=116.1

Q ss_pred             CCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc---ccCCCCCcCEEEcCCCcCCceEeE----eecccee
Q 014120           58 FSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVY----INGVNVH  130 (430)
Q Consensus        58 ~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~  130 (430)
                      ++|++|+|++|.++... ...+.++++|++|++++|. ++.+   .+.++++|++|++++|.  +..+.    ..+++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~  103 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLG-SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNP--IQSLALGAFSGLSSLQ  103 (276)
T ss_dssp             TTCCEEECTTCCCCEEC-TTTTTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCC--CCEECTTTTTTCTTCC
T ss_pred             CCccEEECCCCcccccC-HhHhccccCCcEEECCCCc-CCccCHHHccCCcCCCEEECCCCc--cCccChhhhcCCcccc
Confidence            57999999999885432 2256789999999999984 3332   35678999999999874  44332    2368999


Q ss_pred             EEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc-c---ccccc----eE
Q 014120          131 SVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI-S---SPRLK----EL  200 (430)
Q Consensus       131 ~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~-~---~~~L~----~L  200 (430)
                      +|++++....  ....+.++++|++|++++|.+++..++..+.++++|+.|+++++.. ..++. .   ..+|+    +|
T Consensus       104 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~l~~L~~l~l~L  182 (276)
T 2z62_A          104 KLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSL  182 (276)
T ss_dssp             EEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCC-CEECGGGGHHHHTCTTCCEEE
T ss_pred             EEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCC-CcCCHHHhhhhhhccccceee
Confidence            9999873222  1335788999999999999986544566788899999999987653 22221 1   23454    78


Q ss_pred             eccccccccccc---ccCCCcceEEeccee
Q 014120          201 VFERCEELVEFE---LDTPNLSIFKCFNYV  227 (430)
Q Consensus       201 ~l~~c~~L~~~~---i~~p~L~~~~~~~~~  227 (430)
                      +++++ .++.+.   +..++|+.+...++.
T Consensus       183 ~ls~n-~l~~~~~~~~~~~~L~~L~L~~n~  211 (276)
T 2z62_A          183 DLSLN-PMNFIQPGAFKEIRLKELALDTNQ  211 (276)
T ss_dssp             ECCSS-CCCEECTTSSCSCCEEEEECCSSC
T ss_pred             ecCCC-cccccCccccCCCcccEEECCCCc
Confidence            88877 555443   444578888777664

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.16  E-value=4.6e-11  Score=110.53  Aligned_cols=162  Identities=17%  Similarity=0.173  Sum_probs=101.5

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~   95 (430)
                      ++..+.....+|..+.  ++++.|+|+++.+..  +..+.++++|++|+|++|.++... ...+.++++|++|++++|..
T Consensus        19 l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l   95 (251)
T 3m19_A           19 VDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS-AGVFDDLTELGTLGLANNQL   95 (251)
T ss_dssp             EECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCEEECTTSCC
T ss_pred             EecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC-HhHhccCCcCCEEECCCCcc
Confidence            4555566788887764  689999999987654  456889999999999999885421 33467889999999998753


Q ss_pred             --CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHH-HHhcC
Q 014120           96 --LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY-NQISE  172 (430)
Q Consensus        96 --l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~-~l~~~  172 (430)
                        +..-.+.++++|++|++++|.  +..+                 + ...+.++++|+.|+|++|.+++  ++ ..+.+
T Consensus        96 ~~~~~~~~~~l~~L~~L~L~~N~--l~~~-----------------~-~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~  153 (251)
T 3m19_A           96 ASLPLGVFDHLTQLDKLYLGGNQ--LKSL-----------------P-SGVFDRLTKLKELRLNTNQLQS--IPAGAFDK  153 (251)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC--CCCC-----------------C-TTTTTTCTTCCEEECCSSCCCC--CCTTTTTT
T ss_pred             cccChhHhcccCCCCEEEcCCCc--CCCc-----------------C-hhHhccCCcccEEECcCCcCCc--cCHHHcCc
Confidence              222234567888888888764  2111                 1 1224455566666666665532  22 23445


Q ss_pred             CCccceeccccccccccccc----cccccceEecccc
Q 014120          173 LPFLEYLALHYCMKLRSINI----SSPRLKELVFERC  205 (430)
Q Consensus       173 ~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c  205 (430)
                      +++|+.|+++++. +..++.    ..++|+.|+++++
T Consensus       154 l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          154 LTNLQTLSLSTNQ-LQSVPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSC
T ss_pred             CcCCCEEECCCCc-CCccCHHHHhCCCCCCEEEeeCC
Confidence            5666666665443 222221    1345666666655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.15  E-value=5.7e-11  Score=123.89  Aligned_cols=152  Identities=18%  Similarity=0.159  Sum_probs=73.8

Q ss_pred             ccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCC
Q 014120           24 RIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLG  103 (430)
Q Consensus        24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~  103 (430)
                      ....+| .+..+++|+.|+|++|.+.....+..+++|+.|+|++|.+++-  + .+..+++|+.|+|++|..-..-.+.+
T Consensus        54 ~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~l--~-~l~~l~~L~~L~Ls~N~l~~l~~l~~  129 (605)
T 1m9s_A           54 DIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIKDL--S-SLKDLKKLKSLSLEHNGISDINGLVH  129 (605)
T ss_dssp             CCCCCT-TGGGCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCCC--T-TSTTCTTCCEEECTTSCCCCCGGGGG
T ss_pred             CCCCCh-HHccCCCCCEEEeeCCCCCCChhhccCCCCCEEECcCCCCCCC--h-hhccCCCCCEEEecCCCCCCCccccC
Confidence            344444 3455666666666665544322255566666666666655331  1 24455666666666554221122344


Q ss_pred             CCCcCEEEcCCCcCCceEeE--eeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecc
Q 014120          104 LNKLKEIKLDSNRCGLERVY--INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLAL  181 (430)
Q Consensus       104 ~~~L~~L~l~~c~~~l~~l~--i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L  181 (430)
                      +++|+.|++++|.  +..+.  -.+++|+.|++++..+.....+..+++|+.|+|++|.+++  ++ .+..+++|+.|++
T Consensus       130 l~~L~~L~Ls~N~--l~~l~~l~~l~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~L~L  204 (605)
T 1m9s_A          130 LPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDVLEL  204 (605)
T ss_dssp             CTTCSEEECCSSC--CCCCGGGGSCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSEEEC
T ss_pred             CCccCEEECCCCc--cCCchhhcccCCCCEEECcCCcCCCchhhccCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEc
Confidence            5566666666553  11111  1245555555555222211124555555555555555533  11 2445555555555


Q ss_pred             ccc
Q 014120          182 HYC  184 (430)
Q Consensus       182 ~~c  184 (430)
                      ++|
T Consensus       205 ~~N  207 (605)
T 1m9s_A          205 FSQ  207 (605)
T ss_dssp             CSE
T ss_pred             cCC
Confidence            544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.15  E-value=2.4e-11  Score=119.73  Aligned_cols=215  Identities=18%  Similarity=0.168  Sum_probs=142.7

Q ss_pred             CCceEEEEEecC---CccccCCccccCCCCccEEEEcCccCCC-----CCC-------CCCCCCCCEEEEeeecCChH--
Q 014120           11 SNVKELKLDVGC---CRIYNLPQIVFYLKSIYVLDFEFCKLEP-----PRS-------TVTLFSLRKLCLSFVHVDDE--   73 (430)
Q Consensus        11 ~~v~~L~L~~~~---~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-----~~~-------~~~l~~L~~L~Ls~~~~~~~--   73 (430)
                      ..++.|+|..+.   .....++..+..+++|++|+|++|....     |..       +.++++|++|+|++|.+++.  
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~  111 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ  111 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence            456666653321   1122355557779999999999974331     212       36889999999999999653  


Q ss_pred             -HHHHHhcCCCCccEEEeeeCCCC----Cccc--cCCC---------CCcCEEEcCCCcC---CceEe---EeeccceeE
Q 014120           74 -VIRDMVAGCPLIEYININNCPGL----KSLQ--LLGL---------NKLKEIKLDSNRC---GLERV---YINGVNVHS  131 (430)
Q Consensus        74 -~l~~l~~~~p~Le~L~L~~c~~l----~~l~--l~~~---------~~L~~L~l~~c~~---~l~~l---~i~~p~L~~  131 (430)
                       .+...+..+++|++|+|++|..-    ..+.  +..+         ++|++|++++|.-   .+..+   -..+++|++
T Consensus       112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~  191 (386)
T 2ca6_A          112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT  191 (386)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred             HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence             45667789999999999998631    1110  1222         7999999998751   11111   113678999


Q ss_pred             EEeecCCCC-------ceeccCCCCcCceEEccCCCCCh---HHHHHHhcCCCccceecccccccccc----ccc-----
Q 014120          132 VDIKVYLEP-------CEVNVSSCKNLTHLRLDGLSITD---KWLYNQISELPFLEYLALHYCMKLRS----INI-----  192 (430)
Q Consensus       132 L~l~~~~~~-------~~~~~~~l~~L~~L~L~~~~i~~---~~l~~l~~~~p~Le~L~L~~c~~l~~----l~~-----  192 (430)
                      |++++..+.       .+..+..+++|+.|+|++|.+++   ..++..+..+++|+.|++++|.--..    ++.     
T Consensus       192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~  271 (386)
T 2ca6_A          192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL  271 (386)
T ss_dssp             EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred             EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence            999883332       01156788899999999999865   44566778899999999987763211    121     


Q ss_pred             cccccceEeccccccccc-----cc--c-c-CCCcceEEecce
Q 014120          193 SSPRLKELVFERCEELVE-----FE--L-D-TPNLSIFKCFNY  226 (430)
Q Consensus       193 ~~~~L~~L~l~~c~~L~~-----~~--i-~-~p~L~~~~~~~~  226 (430)
                      ..++|+.|++++| .++.     +.  + . .|+|+++...++
T Consensus       272 ~~~~L~~L~L~~n-~i~~~g~~~l~~~l~~~l~~L~~L~l~~N  313 (386)
T 2ca6_A          272 ENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLELNGN  313 (386)
T ss_dssp             SSCCCCEEECCSS-CCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred             cCCCeEEEECcCC-cCCHHHHHHHHHHHHhcCCCceEEEccCC
Confidence            1578999999988 5554     32  2 2 377777776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.15  E-value=5.6e-11  Score=111.39  Aligned_cols=185  Identities=16%  Similarity=0.083  Sum_probs=128.6

Q ss_pred             hCCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEE
Q 014120           10 ASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (430)
Q Consensus        10 ~~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~   89 (430)
                      -..++++.+  .++....+| .+..+++|++|+++++.+.....+.++++|++|+|++|.++.. ....+.++++|++|+
T Consensus        40 l~~L~~L~l--~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~  115 (272)
T 3rfs_A           40 LNSIDQIIA--NNSDIKSVQ-GIQYLPNVRYLALGGNKLHDISALKELTNLTYLILTGNQLQSL-PNGVFDKLTNLKELV  115 (272)
T ss_dssp             HTTCCEEEC--TTSCCCCCT-TGGGCTTCCEEECTTSCCCCCGGGTTCTTCCEEECTTSCCCCC-CTTTTTTCTTCCEEE
T ss_pred             ccceeeeee--CCCCccccc-ccccCCCCcEEECCCCCCCCchhhcCCCCCCEEECCCCccCcc-ChhHhcCCcCCCEEE
Confidence            345655554  334455555 5778999999999998876655678899999999999988542 133467889999999


Q ss_pred             eeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCC
Q 014120           90 INNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSI  161 (430)
Q Consensus        90 L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i  161 (430)
                      +++|..  +..-.+.++++|++|++++|.  +..+.    -.+++|++|++++..+.  ....+.++++|+.|++++|.+
T Consensus       116 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l  193 (272)
T 3rfs_A          116 LVENQLQSLPDGVFDKLTNLTYLNLAHNQ--LQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQL  193 (272)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCCcCCccCHHHhccCCCCCEEECCCCc--cCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcC
Confidence            998753  222225667899999999875  33332    23689999999883332  123367889999999999988


Q ss_pred             ChHHHHHHhcCCCccceeccccccccccccccccccceEecccc
Q 014120          162 TDKWLYNQISELPFLEYLALHYCMKLRSINISSPRLKELVFERC  205 (430)
Q Consensus       162 ~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~~~~~L~~L~l~~c  205 (430)
                      ++ ..+..+..+++|+.|++++++..    ..+++|+.+++..+
T Consensus       194 ~~-~~~~~~~~l~~L~~L~l~~N~~~----~~~~~l~~l~~~~n  232 (272)
T 3rfs_A          194 KS-VPDGVFDRLTSLQYIWLHDNPWD----CTCPGIRYLSEWIN  232 (272)
T ss_dssp             SC-CCTTTTTTCTTCCEEECCSSCBC----CCTTTTHHHHHHHH
T ss_pred             Cc-cCHHHHhCCcCCCEEEccCCCcc----ccCcHHHHHHHHHH
Confidence            54 22345678899999999876532    22445666655544

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.13  E-value=2.2e-11  Score=116.45  Aligned_cols=189  Identities=15%  Similarity=0.098  Sum_probs=124.5

Q ss_pred             CCCCccEEEEcCccCCC--CCCC--CCCCCCCEEEEeeecCChHH--H-HHHhcCCCCccEEEeeeCCCC--CccccCCC
Q 014120           34 YLKSIYVLDFEFCKLEP--PRST--VTLFSLRKLCLSFVHVDDEV--I-RDMVAGCPLIEYININNCPGL--KSLQLLGL  104 (430)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~--~~~~--~~l~~L~~L~Ls~~~~~~~~--l-~~l~~~~p~Le~L~L~~c~~l--~~l~l~~~  104 (430)
                      ..++|++|++++|.+..  |..+  .++++|++|+|++|.+++..  + ...+..+++|++|++++|..-  ..-.+.++
T Consensus        89 ~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l  168 (310)
T 4glp_A           89 AYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAF  168 (310)
T ss_dssp             HHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCC
T ss_pred             ccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccC
Confidence            35679999999987543  4444  78899999999999885411  1 123447889999999987642  22234567


Q ss_pred             CCcCEEEcCCCcCCceE--e---E--eeccceeEEEeecCCCCc-ee----ccCCCCcCceEEccCCCCChHHHHHHhcC
Q 014120          105 NKLKEIKLDSNRCGLER--V---Y--INGVNVHSVDIKVYLEPC-EV----NVSSCKNLTHLRLDGLSITDKWLYNQISE  172 (430)
Q Consensus       105 ~~L~~L~l~~c~~~l~~--l---~--i~~p~L~~L~l~~~~~~~-~~----~~~~l~~L~~L~L~~~~i~~~~l~~l~~~  172 (430)
                      ++|++|++++|. ....  +   .  ...++|++|++++..+.. ..    -+..+++|++|+|++|.+++. .+..+..
T Consensus       169 ~~L~~L~Ls~N~-l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~-~p~~~~~  246 (310)
T 4glp_A          169 PALTSLDLSDNP-GLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRAT-VNPSAPR  246 (310)
T ss_dssp             TTCCEEECCSCT-TCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCC-CCSCCSS
T ss_pred             CCCCEEECCCCC-CccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCcc-chhhHHh
Confidence            889999998875 2211  1   1  246788888888733321 11    135778999999999988542 1222334


Q ss_pred             C---Cccceecccccccccccccc-ccccceEeccccccccccc--ccCCCcceEEecce
Q 014120          173 L---PFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEFE--LDTPNLSIFKCFNY  226 (430)
Q Consensus       173 ~---p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c~~L~~~~--i~~p~L~~~~~~~~  226 (430)
                      +   ++|+.|+++++. +..++.. .++|+.|+++++ .++.+.  -..|+|+.+...++
T Consensus       247 ~~~~~~L~~L~Ls~N~-l~~lp~~~~~~L~~L~Ls~N-~l~~~~~~~~l~~L~~L~L~~N  304 (310)
T 4glp_A          247 CMWSSALNSLNLSFAG-LEQVPKGLPAKLRVLDLSSN-RLNRAPQPDELPEVDNLTLDGN  304 (310)
T ss_dssp             CCCCTTCCCEECCSSC-CCSCCSCCCSCCSCEECCSC-CCCSCCCTTSCCCCSCEECSST
T ss_pred             ccCcCcCCEEECCCCC-CCchhhhhcCCCCEEECCCC-cCCCCchhhhCCCccEEECcCC
Confidence            4   799999997654 3455443 478999999988 666543  24477777766654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.13  E-value=1.1e-10  Score=110.46  Aligned_cols=179  Identities=17%  Similarity=0.144  Sum_probs=100.2

Q ss_pred             EecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCC
Q 014120           19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL   96 (430)
Q Consensus        19 ~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l   96 (430)
                      +...+....+|..+.  ++++.|+|+++.+..  +..+.++++|++|+|++|.++...  . ...+++|+.|+++++.. 
T Consensus        16 ~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~--~-~~~l~~L~~L~Ls~N~l-   89 (290)
T 1p9a_G           16 NCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--V-DGTLPVLGTLDLSHNQL-   89 (290)
T ss_dssp             ECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--C-CSCCTTCCEEECCSSCC-
T ss_pred             ECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCccc--C-CCCCCcCCEEECCCCcC-
Confidence            334445566665553  567777777766543  345667777777777777664321  1 14667777777776532 


Q ss_pred             Ccc--ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCC
Q 014120           97 KSL--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELP  174 (430)
Q Consensus        97 ~~l--~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p  174 (430)
                      +.+  .+.++++|+.|++++|.  +..                 .+ ...+.++++|+.|++++|.++. ..+..+..++
T Consensus        90 ~~l~~~~~~l~~L~~L~l~~N~--l~~-----------------l~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~  148 (290)
T 1p9a_G           90 QSLPLLGQTLPALTVLDVSFNR--LTS-----------------LP-LGALRGLGELQELYLKGNELKT-LPPGLLTPTP  148 (290)
T ss_dssp             SSCCCCTTTCTTCCEEECCSSC--CCC-----------------CC-SSTTTTCTTCCEEECTTSCCCC-CCTTTTTTCT
T ss_pred             CcCchhhccCCCCCEEECCCCc--Ccc-----------------cC-HHHHcCCCCCCEEECCCCCCCc-cChhhccccc
Confidence            222  12344566666665543  110                 11 2346677777888887777742 1122455677


Q ss_pred             ccceeccccccccccccc----cccccceEeccccccccccc---ccCCCcceEEecce
Q 014120          175 FLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNY  226 (430)
Q Consensus       175 ~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~  226 (430)
                      +|+.|+++++. +..++.    ..++|+.|+++++ .++.+.   +..++++.+...|+
T Consensus       149 ~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~L~~N-~l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          149 KLEKLSLANNN-LTELPAGLLNGLENLDTLLLQEN-SLYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             TCCEEECTTSC-CSCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTTCCCSEEECCSC
T ss_pred             CCCEEECCCCc-CCccCHHHhcCcCCCCEEECCCC-cCCccChhhcccccCCeEEeCCC
Confidence            77777776543 334432    2467777777776 555443   33445555544443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.13  E-value=2.3e-11  Score=116.70  Aligned_cols=167  Identities=12%  Similarity=0.072  Sum_probs=100.7

Q ss_pred             CCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc---cc-CCCCCcCEEE
Q 014120           36 KSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL---QL-LGLNKLKEIK  111 (430)
Q Consensus        36 ~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~l-~~~~~L~~L~  111 (430)
                      ++|++|+++++.+... ....+++|++|++++|.++... +..+..+++|++|++++|.. +..   .+ .++++|++|+
T Consensus        99 ~~L~~L~l~~n~l~~~-~~~~~~~L~~L~l~~N~l~~~~-~~~~~~l~~L~~L~Ls~N~l-~~~~~~~~~~~l~~L~~L~  175 (317)
T 3o53_A           99 PSIETLHAANNNISRV-SCSRGQGKKNIYLANNKITMLR-DLDEGCRSRVQYLDLKLNEI-DTVNFAELAASSDTLEHLN  175 (317)
T ss_dssp             TTCCEEECCSSCCSEE-EECCCSSCEEEECCSSCCCSGG-GBCTGGGSSEEEEECTTSCC-CEEEGGGGGGGTTTCCEEE
T ss_pred             CCcCEEECCCCccCCc-CccccCCCCEEECCCCCCCCcc-chhhhccCCCCEEECCCCCC-CcccHHHHhhccCcCCEEE
Confidence            6777888877765541 1234677888888888775421 22345677888888887643 221   12 2457788888


Q ss_pred             cCCCcCCceEeE--eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccc-
Q 014120          112 LDSNRCGLERVY--INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKL-  187 (430)
Q Consensus       112 l~~c~~~l~~l~--i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l-  187 (430)
                      +++|.  +..+.  ...++|++|++++..+. .+..+..+++|+.|++++|.++  .++..+..++.|+.|++++++.. 
T Consensus       176 L~~N~--l~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~--~l~~~~~~l~~L~~L~l~~N~~~~  251 (317)
T 3o53_A          176 LQYNF--IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNNKLV--LIEKALRFSQNLEHFDLRGNGFHC  251 (317)
T ss_dssp             CTTSC--CCEEECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTSCCC--EECTTCCCCTTCCEEECTTCCCBH
T ss_pred             CCCCc--CcccccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCCccc--chhhHhhcCCCCCEEEccCCCccC
Confidence            87764  33332  23677888887773332 2234667778888888888774  34445667778888888765433 


Q ss_pred             cccc---ccccccceEecccccccc
Q 014120          188 RSIN---ISSPRLKELVFERCEELV  209 (430)
Q Consensus       188 ~~l~---~~~~~L~~L~l~~c~~L~  209 (430)
                      ..++   ...++|+.+++.++..++
T Consensus       252 ~~~~~~~~~~~~L~~l~l~~~~~l~  276 (317)
T 3o53_A          252 GTLRDFFSKNQRVQTVAKQTVKKLT  276 (317)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHhccccceEEECCCchhcc
Confidence            1221   124566666666554443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.09  E-value=5.9e-11  Score=110.80  Aligned_cols=88  Identities=17%  Similarity=0.166  Sum_probs=61.7

Q ss_pred             CccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-cc
Q 014120           23 CRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QL  101 (430)
Q Consensus        23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~l  101 (430)
                      +....+| .+..+++|++|+++++.+.....+..+++|++|+|++|.+++..  . +.++++|+.|++++|.. +.+ .+
T Consensus        29 ~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~~l~~l~~L~~L~L~~N~i~~~~--~-l~~l~~L~~L~L~~N~l-~~l~~~  103 (263)
T 1xeu_A           29 QSVTDLV-SQKELSGVQNFNGDNSNIQSLAGMQFFTNLKELHLSHNQISDLS--P-LKDLTKLEELSVNRNRL-KNLNGI  103 (263)
T ss_dssp             SCTTSEE-CHHHHTTCSEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCCG--G-GTTCSSCCEEECCSSCC-SCCTTC
T ss_pred             CCccccc-chhhcCcCcEEECcCCCcccchHHhhCCCCCEEECCCCccCCCh--h-hccCCCCCEEECCCCcc-CCcCcc
Confidence            3444555 45568889999999887665346778899999999998885532  2 77888999999988743 222 22


Q ss_pred             CCCCCcCEEEcCCCc
Q 014120          102 LGLNKLKEIKLDSNR  116 (430)
Q Consensus       102 ~~~~~L~~L~l~~c~  116 (430)
                      .. ++|++|++++|.
T Consensus       104 ~~-~~L~~L~L~~N~  117 (263)
T 1xeu_A          104 PS-ACLSRLFLDNNE  117 (263)
T ss_dssp             CC-SSCCEEECCSSC
T ss_pred             cc-CcccEEEccCCc
Confidence            22 777888877764

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.09  E-value=1.6e-10  Score=120.57  Aligned_cols=164  Identities=17%  Similarity=0.120  Sum_probs=126.1

Q ss_pred             cCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEc
Q 014120           33 FYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKL  112 (430)
Q Consensus        33 ~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l  112 (430)
                      ..+++|+.|+++++.+.....+..+++|+.|+|++|.+++..  . +..+++|+.|+|++|..-..-.+..+++|+.|++
T Consensus        40 ~~L~~L~~L~l~~n~i~~l~~l~~l~~L~~L~Ls~N~l~~~~--~-l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~L  116 (605)
T 1m9s_A           40 NELNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDIK--P-LTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSL  116 (605)
T ss_dssp             HHHTTCCCCBCTTCCCCCCTTGGGCTTCCEEECTTSCCCCCG--G-GGGCTTCCEEECCSSCCCCCTTSTTCTTCCEEEC
T ss_pred             hcCCCCCEEECcCCCCCCChHHccCCCCCEEEeeCCCCCCCh--h-hccCCCCCEEECcCCCCCCChhhccCCCCCEEEe
Confidence            457889999999988766557889999999999999985532  2 7899999999999985322224667899999999


Q ss_pred             CCCcCCceEe--EeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccc
Q 014120          113 DSNRCGLERV--YINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSI  190 (430)
Q Consensus       113 ~~c~~~l~~l--~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l  190 (430)
                      ++|.  +..+  ...+++|+.|++++..+.....+..+++|+.|+|++|.+.+.  .. +..+++|+.|+|++|. +..+
T Consensus       117 s~N~--l~~l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~l~~~--~~-l~~l~~L~~L~Ls~N~-i~~l  190 (605)
T 1m9s_A          117 EHNG--ISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDI--VP-LAGLTKLQNLYLSKNH-ISDL  190 (605)
T ss_dssp             TTSC--CCCCGGGGGCTTCSEEECCSSCCCCCGGGGSCTTCSEEECCSSCCCCC--GG-GTTCTTCCEEECCSSC-CCBC
T ss_pred             cCCC--CCCCccccCCCccCEEECCCCccCCchhhcccCCCCEEECcCCcCCCc--hh-hccCCCCCEEECcCCC-CCCC
Confidence            9886  2222  123789999999984443235678899999999999999652  22 7889999999998764 3334


Q ss_pred             cc--cccccceEecccc
Q 014120          191 NI--SSPRLKELVFERC  205 (430)
Q Consensus       191 ~~--~~~~L~~L~l~~c  205 (430)
                      +.  ..++|+.|++++|
T Consensus       191 ~~l~~l~~L~~L~L~~N  207 (605)
T 1m9s_A          191 RALAGLKNLDVLELFSQ  207 (605)
T ss_dssp             GGGTTCTTCSEEECCSE
T ss_pred             hHHccCCCCCEEEccCC
Confidence            32  2578999999987

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.09  E-value=6.6e-11  Score=113.05  Aligned_cols=190  Identities=12%  Similarity=0.012  Sum_probs=127.2

Q ss_pred             CCCccEEEEcCccCCCC-----CCCCCCCCCCEEEEeeecCChHHHHHHh-cCCCCccEEEeeeCCCCC------ccccC
Q 014120           35 LKSIYVLDFEFCKLEPP-----RSTVTLFSLRKLCLSFVHVDDEVIRDMV-AGCPLIEYININNCPGLK------SLQLL  102 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~~-----~~~~~l~~L~~L~Ls~~~~~~~~l~~l~-~~~p~Le~L~L~~c~~l~------~l~l~  102 (430)
                      ...++.+.+.++.+...     ..+..+++|++|+|++|.+++.....++ ..+++|++|++++|..-.      ...+.
T Consensus        63 ~~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~  142 (310)
T 4glp_A           63 ALRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQW  142 (310)
T ss_dssp             SCCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTT
T ss_pred             hcceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhh
Confidence            44578888888765431     1223467799999999987543212222 778999999999986422      13345


Q ss_pred             CCCCcCEEEcCCCcCCceEe----EeeccceeEEEeecCCCC------ceeccCCCCcCceEEccCCCCCh--HHHHHHh
Q 014120          103 GLNKLKEIKLDSNRCGLERV----YINGVNVHSVDIKVYLEP------CEVNVSSCKNLTHLRLDGLSITD--KWLYNQI  170 (430)
Q Consensus       103 ~~~~L~~L~l~~c~~~l~~l----~i~~p~L~~L~l~~~~~~------~~~~~~~l~~L~~L~L~~~~i~~--~~l~~l~  170 (430)
                      ++++|++|++++|.  +..+    .-..++|++|++++....      ....+..+++|++|++++|.++.  .....++
T Consensus       143 ~~~~L~~L~Ls~n~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~  220 (310)
T 4glp_A          143 LKPGLKVLSIAQAH--SPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALA  220 (310)
T ss_dssp             BCSCCCEEEEECCS--SCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHH
T ss_pred             hccCCCEEEeeCCC--cchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHH
Confidence            67899999999875  2222    124689999999884321      12234678899999999999963  2223356


Q ss_pred             cCCCccceeccccccccccccc---c---ccccceEecccccccccccc-cCCCcceEEeccee
Q 014120          171 SELPFLEYLALHYCMKLRSINI---S---SPRLKELVFERCEELVEFEL-DTPNLSIFKCFNYV  227 (430)
Q Consensus       171 ~~~p~Le~L~L~~c~~l~~l~~---~---~~~L~~L~l~~c~~L~~~~i-~~p~L~~~~~~~~~  227 (430)
                      .+++.|+.|+++++.--...+.   .   .++|++|+++++ .++.+.- -.++|+.+...++.
T Consensus       221 ~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N-~l~~lp~~~~~~L~~L~Ls~N~  283 (310)
T 4glp_A          221 AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFA-GLEQVPKGLPAKLRVLDLSSNR  283 (310)
T ss_dssp             HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSS-CCCSCCSCCCSCCSCEECCSCC
T ss_pred             hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCC-CCCchhhhhcCCCCEEECCCCc
Confidence            7889999999987653332221   1   268999999988 6765541 13788888887665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.07  E-value=3.5e-10  Score=109.95  Aligned_cols=202  Identities=16%  Similarity=0.107  Sum_probs=136.2

Q ss_pred             EecCCccccCCccccCCCCccEEEEcCccCCC-C-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCC
Q 014120           19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL   96 (430)
Q Consensus        19 ~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l   96 (430)
                      +-++.....+|..+  .+++++|+|+++.+.. | ..|.++++|++|+|++|.+.+..-...+.++++++++...++..+
T Consensus        15 ~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l   92 (350)
T 4ay9_X           15 LCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNL   92 (350)
T ss_dssp             EEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTC
T ss_pred             EecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcc
Confidence            34445677888776  4689999999987654 3 568999999999999998633211234678888888777666666


Q ss_pred             Ccc---ccCCCCCcCEEEcCCCc-CCceEe-EeeccceeEEEeec-CCCC--ceeccCCC-CcCceEEccCCCCChHHHH
Q 014120           97 KSL---QLLGLNKLKEIKLDSNR-CGLERV-YINGVNVHSVDIKV-YLEP--CEVNVSSC-KNLTHLRLDGLSITDKWLY  167 (430)
Q Consensus        97 ~~l---~l~~~~~L~~L~l~~c~-~~l~~l-~i~~p~L~~L~l~~-~~~~--~~~~~~~l-~~L~~L~L~~~~i~~~~l~  167 (430)
                      +.+   .+.++++|++|+++++. ..+... ......+..+.+.+ ..+.  ....+.++ ..++.|++++|.++  .++
T Consensus        93 ~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~--~i~  170 (350)
T 4ay9_X           93 LYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ--EIH  170 (350)
T ss_dssp             CEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC--EEC
T ss_pred             cccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc--CCC
Confidence            655   35667999999998875 222221 22345667777765 2222  12234555 46889999999984  344


Q ss_pred             HHhcCCCccceecccccccccccccc----ccccceEeccccccccccccc-CCCcceEEecc
Q 014120          168 NQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERCEELVEFELD-TPNLSIFKCFN  225 (430)
Q Consensus       168 ~l~~~~p~Le~L~L~~c~~l~~l~~~----~~~L~~L~l~~c~~L~~~~i~-~p~L~~~~~~~  225 (430)
                      ..+...+.|+.|++.+++.++.++..    .++|+.|+++++ .++.+... ..++..+...+
T Consensus       171 ~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~  232 (350)
T 4ay9_X          171 NSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARS  232 (350)
T ss_dssp             TTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTT
T ss_pred             hhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhcc
Confidence            43445678999999888888877652    578999999988 67766532 24555555433

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.04  E-value=8.4e-10  Score=98.11  Aligned_cols=147  Identities=22%  Similarity=0.294  Sum_probs=108.5

Q ss_pred             CCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-ccCCCCCcCEEEcCCCcCCceEeEeeccceeEE
Q 014120           54 TVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSV  132 (430)
Q Consensus        54 ~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L  132 (430)
                      ...+++|++|++++|.+++-  + -+..+++|++|++++| .++.+ .+.++++|++|++++|.  +.            
T Consensus        40 ~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~l~~n-~~~~~~~l~~l~~L~~L~l~~n~--l~------------  101 (197)
T 4ezg_A           40 EAQMNSLTYITLANINVTDL--T-GIEYAHNIKDLTINNI-HATNYNPISGLSNLERLRIMGKD--VT------------  101 (197)
T ss_dssp             HHHHHTCCEEEEESSCCSCC--T-TGGGCTTCSEEEEESC-CCSCCGGGTTCTTCCEEEEECTT--CB------------
T ss_pred             hhhcCCccEEeccCCCccCh--H-HHhcCCCCCEEEccCC-CCCcchhhhcCCCCCEEEeECCc--cC------------
Confidence            36789999999999988642  2 3778999999999998 44433 45667788888877664  10            


Q ss_pred             EeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc--cccccceEeccccccccc
Q 014120          133 DIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI--SSPRLKELVFERCEELVE  210 (430)
Q Consensus       133 ~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~--~~~~L~~L~l~~c~~L~~  210 (430)
                            ......+.++++|++|++++|.+++. .+..+..+++|+.|++++|..+..++.  ..++|+.|++++| .+++
T Consensus       102 ------~~~~~~l~~l~~L~~L~Ls~n~i~~~-~~~~l~~l~~L~~L~L~~n~~i~~~~~l~~l~~L~~L~l~~n-~i~~  173 (197)
T 4ezg_A          102 ------SDKIPNLSGLTSLTLLDISHSAHDDS-ILTKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD-GVHD  173 (197)
T ss_dssp             ------GGGSCCCTTCTTCCEEECCSSBCBGG-GHHHHTTCSSCCEEECCSCTBCCCCGGGGGCSSCCEEECTTB-CCCC
T ss_pred             ------cccChhhcCCCCCCEEEecCCccCcH-hHHHHhhCCCCCEEEccCCCCccccHhhcCCCCCCEEECCCC-CCcC
Confidence                  00135577899999999999999753 345667899999999998876666653  2578999999998 6665


Q ss_pred             cc--ccCCCcceEEecce
Q 014120          211 FE--LDTPNLSIFKCFNY  226 (430)
Q Consensus       211 ~~--i~~p~L~~~~~~~~  226 (430)
                      +.  -..|+|+.+...|+
T Consensus       174 ~~~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          174 YRGIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             CTTGGGCSSCCEEEECBC
T ss_pred             hHHhccCCCCCEEEeeCc
Confidence            53  24577777777665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.04  E-value=1.2e-10  Score=110.28  Aligned_cols=168  Identities=20%  Similarity=0.197  Sum_probs=107.2

Q ss_pred             CCceEEEEEecCCccccCC-ccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEE
Q 014120           11 SNVKELKLDVGCCRIYNLP-QIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP-~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~   89 (430)
                      .+++.|+  ++++....++ ..+..+++|++|+|+++.+........+++|++|+|++|.++.  ++..+.++++|+.|+
T Consensus        31 ~~l~~L~--L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILH--LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEE--CTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEE
T ss_pred             CCCCEEE--cCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCCCCCCcCCEEECCCCcCCc--CchhhccCCCCCEEE
Confidence            4566555  4445555664 4577799999999999887652234789999999999998853  344567899999999


Q ss_pred             eeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHH
Q 014120           90 INNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY  167 (430)
Q Consensus        90 L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~  167 (430)
                      +++|..  +..-.+.++++|++|++++|.  +..+                 + ...+..+++|+.|+|++|.++  .++
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~--l~~~-----------------~-~~~~~~l~~L~~L~L~~N~l~--~l~  164 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNE--LKTL-----------------P-PGLLTPTPKLEKLSLANNNLT--ELP  164 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSC--CCCC-----------------C-TTTTTTCTTCCEEECTTSCCS--CCC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCC--CCcc-----------------C-hhhcccccCCCEEECCCCcCC--ccC
Confidence            999753  222235667889999998875  2111                 1 123455666666666666663  222


Q ss_pred             -HHhcCCCccceecccccccccccccc---ccccceEecccc
Q 014120          168 -NQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERC  205 (430)
Q Consensus       168 -~l~~~~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c  205 (430)
                       ..+.++++|+.|+++++. +..++..   ..+|+.+.+.++
T Consensus       165 ~~~~~~l~~L~~L~L~~N~-l~~ip~~~~~~~~L~~l~L~~N  205 (290)
T 1p9a_G          165 AGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN  205 (290)
T ss_dssp             TTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred             HHHhcCcCCCCEEECCCCc-CCccChhhcccccCCeEEeCCC
Confidence             234556666666665433 2333322   345666666654

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.03  E-value=2.8e-09  Score=111.13  Aligned_cols=138  Identities=22%  Similarity=0.218  Sum_probs=95.4

Q ss_pred             CccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-
Q 014120           23 CRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-   99 (430)
Q Consensus        23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-   99 (430)
                      .....+|..+  ..++++|+|+++.+..  +..|.++++|++|+|++|.++.-. +..+.++++|++|+|++|. ++.+ 
T Consensus        41 ~~l~~vP~~l--p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~-~~~f~~L~~L~~L~Ls~N~-l~~l~  116 (635)
T 4g8a_A           41 LNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTGNP-IQSLA  116 (635)
T ss_dssp             SCCSSCCSSS--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC-TTTTTTCTTCCEEECTTCC-CCEEC
T ss_pred             CCcCccCCCC--CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcC-hhHhcCCCCCCEEEccCCc-CCCCC
Confidence            3566777654  3579999999987654  467899999999999999885321 2357789999999999974 4443 


Q ss_pred             --ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccc
Q 014120          100 --QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLE  177 (430)
Q Consensus       100 --~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le  177 (430)
                        .+.++++|++|++++|.  +..                 ++ ...++++++|++|++++|.++...++..+.+++.|+
T Consensus       117 ~~~f~~L~~L~~L~Ls~N~--l~~-----------------l~-~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~  176 (635)
T 4g8a_A          117 LGAFSGLSSLQKLVAVETN--LAS-----------------LE-NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE  176 (635)
T ss_dssp             GGGGTTCTTCCEEECTTSC--CCC-----------------ST-TCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCC
T ss_pred             HHHhcCCCCCCEEECCCCc--CCC-----------------CC-hhhhhcCcccCeeccccCccccCCCchhhccchhhh
Confidence              35678889999998875  111                 11 234566777777777777664433445556677777


Q ss_pred             eeccccc
Q 014120          178 YLALHYC  184 (430)
Q Consensus       178 ~L~L~~c  184 (430)
                      .|+++++
T Consensus       177 ~L~L~~N  183 (635)
T 4g8a_A          177 HLDLSSN  183 (635)
T ss_dssp             EEECCSS
T ss_pred             hhcccCc
Confidence            7777654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.02  E-value=6.4e-10  Score=99.65  Aligned_cols=138  Identities=16%  Similarity=0.102  Sum_probs=85.1

Q ss_pred             EecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC-
Q 014120           19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG-   95 (430)
Q Consensus        19 ~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~-   95 (430)
                      +........+|..+  .++|++|+++++.+..  +..+.++++|++|+|++|.++.. ....+.++++|++|++++|.. 
T Consensus        13 ~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~   89 (208)
T 2o6s_A           13 ECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSL-PNGVFNKLTSLTYLNLSTNQLQ   89 (208)
T ss_dssp             ECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCCC
T ss_pred             EecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCcc-ChhhcCCCCCcCEEECCCCcCC
Confidence            44445567777665  4589999999987654  34578899999999999988532 123467889999999998742 


Q ss_pred             -CCccccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCC
Q 014120           96 -LKSLQLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSI  161 (430)
Q Consensus        96 -l~~l~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i  161 (430)
                       +..-.+.++++|++|+++++.  +..+.    -..++|++|++++..+.  ....+..+++|+.|++++|.+
T Consensus        90 ~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           90 SLPNGVFDKLTQLKELALNTNQ--LQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             CCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             ccCHhHhcCccCCCEEEcCCCc--CcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence             222224567888999888764  22211    12345555555442111  011244455555555555544

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.01  E-value=2.5e-10  Score=111.50  Aligned_cols=177  Identities=13%  Similarity=0.082  Sum_probs=100.7

Q ss_pred             CccccCCCCccEEEEcCccCCC-C-----CCCCCCC-CCCEEEEeeecCCh---HHHHHHhcCC-CCccEEEeeeCCCCC
Q 014120           29 PQIVFYLKSIYVLDFEFCKLEP-P-----RSTVTLF-SLRKLCLSFVHVDD---EVIRDMVAGC-PLIEYININNCPGLK   97 (430)
Q Consensus        29 P~~l~~~~~L~~L~Ls~~~~~~-~-----~~~~~l~-~L~~L~Ls~~~~~~---~~l~~l~~~~-p~Le~L~L~~c~~l~   97 (430)
                      |..+...++|++|+|++|.+.. +     ..+.+++ +|++|+|++|.+++   ..+...+... ++|++|++++|.. +
T Consensus        15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l-~   93 (362)
T 3goz_A           15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFL-S   93 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCG-G
T ss_pred             HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcC-C
Confidence            4333345669999999987654 1     3456788 89999999998854   3444455544 8999999998862 2


Q ss_pred             ccc-------cCCC-CCcCEEEcCCCcCCceEeEe-------e--ccceeEEEeecCCCC--c----eeccCCCC-cCce
Q 014120           98 SLQ-------LLGL-NKLKEIKLDSNRCGLERVYI-------N--GVNVHSVDIKVYLEP--C----EVNVSSCK-NLTH  153 (430)
Q Consensus        98 ~l~-------l~~~-~~L~~L~l~~c~~~l~~l~i-------~--~p~L~~L~l~~~~~~--~----~~~~~~l~-~L~~  153 (430)
                      ...       +..+ ++|++|++++|.  +.....       .  .++|++|++++..+.  .    ...+..++ +|++
T Consensus        94 ~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~  171 (362)
T 3goz_A           94 YKSSDELVKTLAAIPFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNS  171 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCE
T ss_pred             hHHHHHHHHHHHhCCCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccE
Confidence            111       2334 788899988875  222211       0  236666666652221  0    01122333 6777


Q ss_pred             EEccCCCCCh---HHHHHHhcCCC-ccceeccccccccc----cccc----cccccceEecccccccc
Q 014120          154 LRLDGLSITD---KWLYNQISELP-FLEYLALHYCMKLR----SINI----SSPRLKELVFERCEELV  209 (430)
Q Consensus       154 L~L~~~~i~~---~~l~~l~~~~p-~Le~L~L~~c~~l~----~l~~----~~~~L~~L~l~~c~~L~  209 (430)
                      |+|++|.+++   ..+...+..+| .|+.|++++|.--.    .++.    ..++|+.|++++| .++
T Consensus       172 L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~  238 (362)
T 3goz_A          172 LNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLN-CLH  238 (362)
T ss_dssp             EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSS-CCC
T ss_pred             eeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCC-CCC
Confidence            7777776654   23344445553 67777776554211    0111    1246667776666 443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.98  E-value=8.6e-10  Score=100.60  Aligned_cols=139  Identities=19%  Similarity=0.199  Sum_probs=89.3

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~   95 (430)
                      ++........+|..+.  ++|++|+|+++.+..  +..+.++++|++|+|++|.++.-. ...+.++++|+.|+|++|. 
T Consensus        24 v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~-~~~~~~l~~L~~L~Ls~N~-   99 (229)
T 3e6j_A           24 VDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP-VGVFDSLTQLTVLDLGTNQ-   99 (229)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSC-
T ss_pred             eEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC-hhhcccCCCcCEEECCCCc-
Confidence            3445556778887654  889999999987654  466888999999999999874321 2346788899999998874 


Q ss_pred             CCcc---ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHH-HHhc
Q 014120           96 LKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY-NQIS  171 (430)
Q Consensus        96 l~~l---~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~-~l~~  171 (430)
                      ++.+   .+.++++|+.|+++++.  +..                 +  +..+..+++|+.|++++|.++.  ++ ..+.
T Consensus       100 l~~l~~~~~~~l~~L~~L~Ls~N~--l~~-----------------l--p~~~~~l~~L~~L~L~~N~l~~--~~~~~~~  156 (229)
T 3e6j_A          100 LTVLPSAVFDRLVHLKELFMCCNK--LTE-----------------L--PRGIERLTHLTHLALDQNQLKS--IPHGAFD  156 (229)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC--CCS-----------------C--CTTGGGCTTCSEEECCSSCCCC--CCTTTTT
T ss_pred             CCccChhHhCcchhhCeEeccCCc--ccc-----------------c--CcccccCCCCCEEECCCCcCCc--cCHHHHh
Confidence            3332   24456788888887764  111                 1  1334555666666666666532  21 2344


Q ss_pred             CCCccceecccc
Q 014120          172 ELPFLEYLALHY  183 (430)
Q Consensus       172 ~~p~Le~L~L~~  183 (430)
                      .++.|+.|++.+
T Consensus       157 ~l~~L~~L~l~~  168 (229)
T 3e6j_A          157 RLSSLTHAYLFG  168 (229)
T ss_dssp             TCTTCCEEECTT
T ss_pred             CCCCCCEEEeeC
Confidence            555666665554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.98  E-value=9.2e-10  Score=99.80  Aligned_cols=142  Identities=17%  Similarity=0.161  Sum_probs=93.1

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~   95 (430)
                      ++..++....+|..+.  ++++.|+++++.+..  +..+.++++|++|+|++|.++... +..+.++++|++|+|++|..
T Consensus        16 v~c~~~~l~~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~-~~~~~~l~~L~~L~Ls~N~l   92 (220)
T 2v9t_B           16 VDCRGKGLTEIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELA-PDAFQGLRSLNSLVLYGNKI   92 (220)
T ss_dssp             EECTTSCCSSCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEEC-TTTTTTCSSCCEEECCSSCC
T ss_pred             EEcCCCCcCcCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcC-HHHhhCCcCCCEEECCCCcC
Confidence            4555566788887664  789999999987654  357888999999999999885421 34577889999999998742


Q ss_pred             --CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCC
Q 014120           96 --LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISEL  173 (430)
Q Consensus        96 --l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~  173 (430)
                        +..-.+.++++|+.|++++|.  +..                 . .+..+.++++|+.|+|++|.++.- .+..+..+
T Consensus        93 ~~l~~~~f~~l~~L~~L~L~~N~--l~~-----------------~-~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~l  151 (220)
T 2v9t_B           93 TELPKSLFEGLFSLQLLLLNANK--INC-----------------L-RVDAFQDLHNLNLLSLYDNKLQTI-AKGTFSPL  151 (220)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC--CCC-----------------C-CTTTTTTCTTCCEEECCSSCCSCC-CTTTTTTC
T ss_pred             CccCHhHccCCCCCCEEECCCCC--CCE-----------------e-CHHHcCCCCCCCEEECCCCcCCEE-CHHHHhCC
Confidence              222224566788888887764  111                 1 023455666777777777766321 11234456


Q ss_pred             Cccceecccc
Q 014120          174 PFLEYLALHY  183 (430)
Q Consensus       174 p~Le~L~L~~  183 (430)
                      +.|+.|++++
T Consensus       152 ~~L~~L~L~~  161 (220)
T 2v9t_B          152 RAIQTMHLAQ  161 (220)
T ss_dssp             TTCCEEECCS
T ss_pred             CCCCEEEeCC
Confidence            6666666654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.95  E-value=1.9e-09  Score=93.05  Aligned_cols=130  Identities=18%  Similarity=0.149  Sum_probs=82.9

Q ss_pred             CCCccEEEEcCccCC---CCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCCCcCE
Q 014120           35 LKSIYVLDFEFCKLE---PPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKE  109 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~---~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~~L~~  109 (430)
                      .++|++|++++|.+.   .|..+..+++|++|+|++|.++..   ..+..+++|++|++++|..-..+  .+.++++|+.
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV---SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC---SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh---hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            366777777777654   244456777777777777776443   34566777777777776532211  1123567777


Q ss_pred             EEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChH--HHHHHhcCCCccceeccccccc
Q 014120          110 IKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK--WLYNQISELPFLEYLALHYCMK  186 (430)
Q Consensus       110 L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~--~l~~l~~~~p~Le~L~L~~c~~  186 (430)
                      |++++|.  +.                 ..+....+..+++|+.|++++|.+++.  .....+..+|+|+.|++++|..
T Consensus       100 L~Ls~N~--l~-----------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          100 LNLSGNK--LK-----------------DISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             EECBSSS--CC-----------------SSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             EeccCCc--cC-----------------cchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence            7777654  10                 111114567788999999999988542  1124778899999999987753

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.94  E-value=9.3e-10  Score=95.06  Aligned_cols=127  Identities=21%  Similarity=0.138  Sum_probs=78.6

Q ss_pred             CceEEEEEecCCccc--cCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEE
Q 014120           12 NVKELKLDVGCCRIY--NLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~--~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~   89 (430)
                      .+++|++..  +...  .+|..+..+++|++|++++|.+.....+..+++|++|+|++|.++.. ++..+.++++|+.|+
T Consensus        25 ~L~~L~l~~--n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           25 AVRELVLDN--CKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKLPKLKKLELSENRIFGG-LDMLAEKLPNLTHLN  101 (168)
T ss_dssp             SCSEEECCS--CBCBTTBCSSCCGGGGGCCEEEEESSCCCCCSSCCCCSSCCEEEEESCCCCSC-CCHHHHHCTTCCEEE
T ss_pred             cCCEEECCC--CCCChhhHHHHHHhCCCCCEEeCcCCCCCChhhhccCCCCCEEECcCCcCchH-HHHHHhhCCCCCEEe
Confidence            455555433  3344  67766667777888888877655445667777888888888777543 345566677888888


Q ss_pred             eeeCCCCCc----cccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCc--eeccCCCCcCceEEccCCCC
Q 014120           90 INNCPGLKS----LQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSI  161 (430)
Q Consensus        90 L~~c~~l~~----l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~--~~~~~~l~~L~~L~L~~~~i  161 (430)
                      +++|. ++.    -.+.++++|++|++++|.  +.                 ..+.  ...+..+++|+.|++++|.+
T Consensus       102 Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N~--l~-----------------~~~~~~~~~~~~l~~L~~L~l~~n~~  159 (168)
T 2ell_A          102 LSGNK-LKDISTLEPLKKLECLKSLDLFNCE--VT-----------------NLNDYRESVFKLLPQLTYLDGYDRED  159 (168)
T ss_dssp             CBSSS-CCSSGGGGGGSSCSCCCEEECCSSG--GG-----------------TSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred             ccCCc-cCcchhHHHHhcCCCCCEEEeeCCc--Cc-----------------chHHHHHHHHHhCccCcEecCCCCCh
Confidence            87764 222    234456677777776654  00                 1110  12456677788887777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.94  E-value=1.9e-09  Score=91.14  Aligned_cols=125  Identities=16%  Similarity=0.075  Sum_probs=67.9

Q ss_pred             CCccEEEEcCccCC---CCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCCCcCEE
Q 014120           36 KSIYVLDFEFCKLE---PPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEI  110 (430)
Q Consensus        36 ~~L~~L~Ls~~~~~---~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~~L~~L  110 (430)
                      ++|+.|++++|.+.   .|..+..+++|++|++++|.+++.   ..+..+++|++|++++|..-..+  .+.++++|++|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI---ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC---TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc---hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            45566666665544   134445566666666666655432   33455666666666655321111  11124555555


Q ss_pred             EcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHH--HHHHhcCCCccceeccc
Q 014120          111 KLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKW--LYNQISELPFLEYLALH  182 (430)
Q Consensus       111 ~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~--l~~l~~~~p~Le~L~L~  182 (430)
                      ++++|.  +.                 ..+....+..+++|+.|++++|.+++..  ....+..+|+|+.|+++
T Consensus        94 ~ls~N~--i~-----------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           94 NLSGNK--IK-----------------DLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             ECTTSC--CC-----------------SHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             ECCCCc--CC-----------------ChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            555543  00                 0001134567788888888888875421  12467778888888875

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.93  E-value=2.6e-09  Score=98.63  Aligned_cols=149  Identities=19%  Similarity=0.236  Sum_probs=98.2

Q ss_pred             CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      ..++.|+  +.++....+++ .+..+++|++|+|+++.+..  +..+.++++|++|+|++|.++... ...+.++++|++
T Consensus        35 ~~l~~L~--L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~  111 (251)
T 3m19_A           35 ADTEKLD--LQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP-LGVFDHLTQLDK  111 (251)
T ss_dssp             TTCCEEE--CTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC-TTTTTTCTTCCE
T ss_pred             CCCCEEE--ccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccC-hhHhcccCCCCE
Confidence            3455555  44455666665 46679999999999987654  456889999999999999985421 345678999999


Q ss_pred             EEeeeCCCCCcc---ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChH
Q 014120           88 ININNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK  164 (430)
Q Consensus        88 L~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~  164 (430)
                      |++++|. ++.+   .+.++++|+.|++++|.  +..+                 + ...+.++++|+.|+|++|.++. 
T Consensus       112 L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~-----------------~-~~~~~~l~~L~~L~L~~N~l~~-  169 (251)
T 3m19_A          112 LYLGGNQ-LKSLPSGVFDRLTKLKELRLNTNQ--LQSI-----------------P-AGAFDKLTNLQTLSLSTNQLQS-  169 (251)
T ss_dssp             EECCSSC-CCCCCTTTTTTCTTCCEEECCSSC--CCCC-----------------C-TTTTTTCTTCCEEECCSSCCSC-
T ss_pred             EEcCCCc-CCCcChhHhccCCcccEEECcCCc--CCcc-----------------C-HHHcCcCcCCCEEECCCCcCCc-
Confidence            9999974 3333   24567889999998764  2111                 1 1234555666666666666632 


Q ss_pred             HHHHHhcCCCccceeccccc
Q 014120          165 WLYNQISELPFLEYLALHYC  184 (430)
Q Consensus       165 ~l~~l~~~~p~Le~L~L~~c  184 (430)
                      ..+..+..++.|+.|+++++
T Consensus       170 ~~~~~~~~l~~L~~L~l~~N  189 (251)
T 3m19_A          170 VPHGAFDRLGKLQTITLFGN  189 (251)
T ss_dssp             CCTTTTTTCTTCCEEECCSC
T ss_pred             cCHHHHhCCCCCCEEEeeCC
Confidence            11123455666666666543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.93  E-value=1.4e-09  Score=98.51  Aligned_cols=144  Identities=19%  Similarity=0.146  Sum_probs=93.3

Q ss_pred             EEEecCCccccCCccccCCCCccEEEEcCccCCC--C-CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--P-RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (430)
Q Consensus        17 ~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~-~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c   93 (430)
                      .++.+++....+|..+.  ..+++|+|+++.+..  + ..+.++++|++|+|++|.++... ...+.++++|++|+|++|
T Consensus        15 ~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N   91 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIE-EGAFEGASGVNEILLTSN   91 (220)
T ss_dssp             EEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSS
T ss_pred             EeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEEC-HHHhCCCCCCCEEECCCC
Confidence            45566666778887653  457899999987654  2 44788999999999999885421 235678899999999987


Q ss_pred             CC--CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhc
Q 014120           94 PG--LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQIS  171 (430)
Q Consensus        94 ~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~  171 (430)
                      ..  +..-.+.++++|++|++++|.  +..                 . .+..+.++++|+.|+|++|.++. ..+..+.
T Consensus        92 ~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~-----------------~-~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~  150 (220)
T 2v70_A           92 RLENVQHKMFKGLESLKTLMLRSNR--ITC-----------------V-GNDSFIGLSSVRLLSLYDNQITT-VAPGAFD  150 (220)
T ss_dssp             CCCCCCGGGGTTCSSCCEEECTTSC--CCC-----------------B-CTTSSTTCTTCSEEECTTSCCCC-BCTTTTT
T ss_pred             ccCccCHhHhcCCcCCCEEECCCCc--CCe-----------------E-CHhHcCCCccCCEEECCCCcCCE-ECHHHhc
Confidence            53  222235567888888888764  111                 0 02345566677777777776632 1133445


Q ss_pred             CCCccceeccccc
Q 014120          172 ELPFLEYLALHYC  184 (430)
Q Consensus       172 ~~p~Le~L~L~~c  184 (430)
                      .+++|+.|+++++
T Consensus       151 ~l~~L~~L~L~~N  163 (220)
T 2v70_A          151 TLHSLSTLNLLAN  163 (220)
T ss_dssp             TCTTCCEEECCSC
T ss_pred             CCCCCCEEEecCc
Confidence            5666666666543

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.92  E-value=5.7e-10  Score=104.10  Aligned_cols=162  Identities=13%  Similarity=0.028  Sum_probs=110.6

Q ss_pred             CCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCC
Q 014120           35 LKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDS  114 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~  114 (430)
                      +.+++.++++++.+.....+..+++|++|++++|.++.-  + .+..+++|++|++++|..-....+.++++|++|++++
T Consensus        18 l~~l~~l~l~~~~i~~~~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~L~~N~i~~~~~l~~l~~L~~L~L~~   94 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIQSL--A-GMQFFTNLKELHLSHNQISDLSPLKDLTKLEELSVNR   94 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEECHHHHTTCSEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCS
T ss_pred             HHHHHHHHhcCCCcccccchhhcCcCcEEECcCCCcccc--h-HHhhCCCCCEEECCCCccCCChhhccCCCCCEEECCC
Confidence            566777788887765533567899999999999988543  2 4678999999999998532222367789999999998


Q ss_pred             Cc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc-
Q 014120          115 NR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI-  192 (430)
Q Consensus       115 c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~-  192 (430)
                      |. ..+..+..  ++|++|++++..+.....+..+++|+.|++++|.+++-  + .+..+++|+.|+++++.- ..+.. 
T Consensus        95 N~l~~l~~~~~--~~L~~L~L~~N~l~~~~~l~~l~~L~~L~Ls~N~i~~~--~-~l~~l~~L~~L~L~~N~i-~~~~~l  168 (263)
T 1xeu_A           95 NRLKNLNGIPS--ACLSRLFLDNNELRDTDSLIHLKNLEILSIRNNKLKSI--V-MLGFLSKLEVLDLHGNEI-TNTGGL  168 (263)
T ss_dssp             SCCSCCTTCCC--SSCCEEECCSSCCSBSGGGTTCTTCCEEECTTSCCCBC--G-GGGGCTTCCEEECTTSCC-CBCTTS
T ss_pred             CccCCcCcccc--CcccEEEccCCccCCChhhcCcccccEEECCCCcCCCC--h-HHccCCCCCEEECCCCcC-cchHHh
Confidence            86 22222222  77888888774333223567788888888888887542  2 356778888888876542 22211 


Q ss_pred             -cccccceEecccc
Q 014120          193 -SSPRLKELVFERC  205 (430)
Q Consensus       193 -~~~~L~~L~l~~c  205 (430)
                       ..++|+.|+++++
T Consensus       169 ~~l~~L~~L~l~~N  182 (263)
T 1xeu_A          169 TRLKKVNWIDLTGQ  182 (263)
T ss_dssp             TTCCCCCEEEEEEE
T ss_pred             ccCCCCCEEeCCCC
Confidence             2456777777665

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.89  E-value=5.9e-09  Score=101.23  Aligned_cols=194  Identities=11%  Similarity=0.050  Sum_probs=129.4

Q ss_pred             CCceEEEEEecCCccccCCcc-ccCCCCccEEEEcCccCCC---CCCCCCCCCCCEE-EEeeecCChHHHHHHhcCCCCc
Q 014120           11 SNVKELKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKL-CLSFVHVDDEVIRDMVAGCPLI   85 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~-l~~~~~L~~L~Ls~~~~~~---~~~~~~l~~L~~L-~Ls~~~~~~~~l~~l~~~~p~L   85 (430)
                      .++++|+|..  +....+|+. +.++++|++|+|+++.+..   +..|.++++|+++ .+++|.++.-. +..+.++++|
T Consensus        30 ~~l~~L~Ls~--N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L  106 (350)
T 4ay9_X           30 RNAIELRFVL--TKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNL  106 (350)
T ss_dssp             TTCSEEEEES--CCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTC
T ss_pred             CCCCEEEccC--CcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcccc
Confidence            4677776654  668899976 5569999999999987533   3567899998875 55666664321 3457789999


Q ss_pred             cEEEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEee-----ccceeEEEeecCCCC-ceeccCCCCcCceEEcc
Q 014120           86 EYININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYIN-----GVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLD  157 (430)
Q Consensus        86 e~L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~-----~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~  157 (430)
                      ++|++++|..  +......+..++..+++..+. .+..+...     ...++.|++++..+. .........+|+.|.+.
T Consensus       107 ~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~-~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~~~~L~~l~l~  185 (350)
T 4ay9_X          107 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI-NIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS  185 (350)
T ss_dssp             CEEEEEEECCSSCCCCTTCCBSSCEEEEEESCT-TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTSSTTEEEEEEECT
T ss_pred             ccccccccccccCCchhhcccchhhhhhhcccc-ccccccccchhhcchhhhhhccccccccCCChhhccccchhHHhhc
Confidence            9999999753  222222234566777776665 55554321     246788888874333 12233345678999997


Q ss_pred             C-CCCChHHHH-HHhcCCCccceecccccccccccccc-ccccceEecccccccccc
Q 014120          158 G-LSITDKWLY-NQISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERCEELVEF  211 (430)
Q Consensus       158 ~-~~i~~~~l~-~l~~~~p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c~~L~~~  211 (430)
                      + |.+  ..++ ..+.++++|+.|+++++ .+..++.. ..+|+.|.+.++.+++.+
T Consensus       186 ~~n~l--~~i~~~~f~~l~~L~~LdLs~N-~l~~lp~~~~~~L~~L~~l~~~~l~~l  239 (350)
T 4ay9_X          186 DNNNL--EELPNDVFHGASGPVILDISRT-RIHSLPSYGLENLKKLRARSTYNLKKL  239 (350)
T ss_dssp             TCTTC--CCCCTTTTTTEECCSEEECTTS-CCCCCCSSSCTTCCEEECTTCTTCCCC
T ss_pred             cCCcc--cCCCHHHhccCcccchhhcCCC-CcCccChhhhccchHhhhccCCCcCcC
Confidence            5 555  3343 35678899999999866 46666653 567888888877666654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.89  E-value=4.1e-09  Score=108.86  Aligned_cols=173  Identities=14%  Similarity=0.090  Sum_probs=106.5

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L   90 (430)
                      .+++.|+|  +++....+|..++  ++|++|+|++|.+..-.  ..+++|++|+|++|.++.  ++. +.+  +|+.|++
T Consensus        59 ~~L~~L~L--s~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip--~~l~~L~~L~Ls~N~l~~--ip~-l~~--~L~~L~L  127 (571)
T 3cvr_A           59 NQFSELQL--NRLNLSSLPDNLP--PQITVLEITQNALISLP--ELPASLEYLDACDNRLST--LPE-LPA--SLKHLDV  127 (571)
T ss_dssp             TTCSEEEC--CSSCCSCCCSCCC--TTCSEEECCSSCCSCCC--CCCTTCCEEECCSSCCSC--CCC-CCT--TCCEEEC
T ss_pred             CCccEEEe--CCCCCCccCHhHc--CCCCEEECcCCCCcccc--cccCCCCEEEccCCCCCC--cch-hhc--CCCEEEC
Confidence            35666555  3445666887664  78999999988766422  557889999999988754  333 332  8889998


Q ss_pred             eeCCCCCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120           91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (430)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l  169 (430)
                      ++|. ++.+.- .+++|+.|++++|.  +..+....++|+.|+++++.+. .+. +.  ++|+.|+|++|.++  .++. 
T Consensus       128 s~N~-l~~lp~-~l~~L~~L~Ls~N~--l~~lp~~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~L~Ls~N~L~--~lp~-  197 (571)
T 3cvr_A          128 DNNQ-LTMLPE-LPALLEYINADNNQ--LTMLPELPTSLEVLSVRNNQLTFLPE-LP--ESLEALDVSTNLLE--SLPA-  197 (571)
T ss_dssp             CSSC-CSCCCC-CCTTCCEEECCSSC--CSCCCCCCTTCCEEECCSSCCSCCCC-CC--TTCCEEECCSSCCS--SCCC-
T ss_pred             CCCc-CCCCCC-cCccccEEeCCCCc--cCcCCCcCCCcCEEECCCCCCCCcch-hh--CCCCEEECcCCCCC--chhh-
Confidence            8874 333333 56888888888775  2222224567888887773222 112 33  67888888888774  2332 


Q ss_pred             hcC-----CCccceecccccccccccccc---ccccceEecccc
Q 014120          170 ISE-----LPFLEYLALHYCMKLRSINIS---SPRLKELVFERC  205 (430)
Q Consensus       170 ~~~-----~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c  205 (430)
                      +..     .+.|+.|+++++. +..++..   .++|+.|+++++
T Consensus       198 ~~~~L~~~~~~L~~L~Ls~N~-l~~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          198 VPVRNHHSEETEIFFRCRENR-ITHIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             CC--------CCEEEECCSSC-CCCCCGGGGGSCTTEEEECCSS
T ss_pred             HHHhhhcccccceEEecCCCc-ceecCHHHhcCCCCCEEEeeCC
Confidence            221     1222777776543 3344432   456777777776

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.89  E-value=1.2e-09  Score=106.55  Aligned_cols=189  Identities=16%  Similarity=0.068  Sum_probs=126.2

Q ss_pred             CceEEEEEecCCccccCC-----ccccCCC-CccEEEEcCccCCC--CCCCCC-----CCCCCEEEEeeecCCh---HHH
Q 014120           12 NVKELKLDVGCCRIYNLP-----QIVFYLK-SIYVLDFEFCKLEP--PRSTVT-----LFSLRKLCLSFVHVDD---EVI   75 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~~LP-----~~l~~~~-~L~~L~Ls~~~~~~--~~~~~~-----l~~L~~L~Ls~~~~~~---~~l   75 (430)
                      ++++|+  ++.+.....+     ..+..++ +|++|+|++|.+..  +..+..     +++|++|+|++|.+++   ..+
T Consensus        23 ~L~~L~--Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l  100 (362)
T 3goz_A           23 GVTSLD--LSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDEL  100 (362)
T ss_dssp             TCCEEE--CTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHH
T ss_pred             CceEEE--ccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHH
Confidence            365555  4545566666     4455677 89999999987654  222333     3999999999999854   445


Q ss_pred             HHHhcCC-CCccEEEeeeCCCCCccc-------cCC-CCCcCEEEcCCCcCCceEeE--------eec-cceeEEEeecC
Q 014120           76 RDMVAGC-PLIEYININNCPGLKSLQ-------LLG-LNKLKEIKLDSNRCGLERVY--------ING-VNVHSVDIKVY  137 (430)
Q Consensus        76 ~~l~~~~-p~Le~L~L~~c~~l~~l~-------l~~-~~~L~~L~l~~c~~~l~~l~--------i~~-p~L~~L~l~~~  137 (430)
                      ...+..+ ++|++|++++|.. +...       +.. +.+|++|++++|.  +....        ... ++|++|++++.
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l-~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~n  177 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDF-SSKSSSEFKQAFSNLPASITSLNLRGND--LGIKSSDELIQILAAIPANVNSLNLRGN  177 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCG-GGSCHHHHHHHHTTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTSCTTCCEEECTTS
T ss_pred             HHHHHhCCCCccEEECcCCcC-CcHHHHHHHHHHHhCCCceeEEEccCCc--CCHHHHHHHHHHHhcCCccccEeeecCC
Confidence            5556666 8999999999862 2221       223 3699999999875  22111        113 48999999984


Q ss_pred             CCC--cee----ccCCC-CcCceEEccCCCCCh---HHHHHHhcC-CCccceecccccccccccc--------ccccccc
Q 014120          138 LEP--CEV----NVSSC-KNLTHLRLDGLSITD---KWLYNQISE-LPFLEYLALHYCMKLRSIN--------ISSPRLK  198 (430)
Q Consensus       138 ~~~--~~~----~~~~l-~~L~~L~L~~~~i~~---~~l~~l~~~-~p~Le~L~L~~c~~l~~l~--------~~~~~L~  198 (430)
                      .+.  ...    .+..+ ++|+.|+|++|.+++   ..++..+.. .+.|+.|+++++. +....        ...++|+
T Consensus       178 ~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~~~l~~L~  256 (362)
T 3goz_A          178 NLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLKDSLKHLQ  256 (362)
T ss_dssp             CGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTTTTTTTCS
T ss_pred             CCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHHhcCCCcc
Confidence            332  111    23445 599999999999976   234554444 5699999998764 32221        2357899


Q ss_pred             eEeccccc
Q 014120          199 ELVFERCE  206 (430)
Q Consensus       199 ~L~l~~c~  206 (430)
                      .|++++|.
T Consensus       257 ~L~L~~n~  264 (362)
T 3goz_A          257 TVYLDYDI  264 (362)
T ss_dssp             EEEEEHHH
T ss_pred             EEEeccCC
Confidence            99999983

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.85  E-value=7.2e-09  Score=107.07  Aligned_cols=170  Identities=14%  Similarity=0.079  Sum_probs=116.1

Q ss_pred             CCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCC
Q 014120           36 KSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDS  114 (430)
Q Consensus        36 ~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~  114 (430)
                      .+|+.|+++++.+.. |..+  +++|++|+|++|.++.  ++   ..+++|+.|++++|. ++.+.- -..+|++|++++
T Consensus        59 ~~L~~L~Ls~n~L~~lp~~l--~~~L~~L~Ls~N~l~~--ip---~~l~~L~~L~Ls~N~-l~~ip~-l~~~L~~L~Ls~  129 (571)
T 3cvr_A           59 NQFSELQLNRLNLSSLPDNL--PPQITVLEITQNALIS--LP---ELPASLEYLDACDNR-LSTLPE-LPASLKHLDVDN  129 (571)
T ss_dssp             TTCSEEECCSSCCSCCCSCC--CTTCSEEECCSSCCSC--CC---CCCTTCCEEECCSSC-CSCCCC-CCTTCCEEECCS
T ss_pred             CCccEEEeCCCCCCccCHhH--cCCCCEEECcCCCCcc--cc---cccCCCCEEEccCCC-CCCcch-hhcCCCEEECCC
Confidence            389999999987654 4333  4899999999999863  33   568999999999984 333322 124999999998


Q ss_pred             Cc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccccccccc
Q 014120          115 NR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS  193 (430)
Q Consensus       115 c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~~  193 (430)
                      |. ++++.   ..++|+.|++++..+.. +. ..+++|+.|+|++|.+++  ++. +.  ++|+.|+++++. +..++..
T Consensus       130 N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp-~~l~~L~~L~Ls~N~L~~--lp~-l~--~~L~~L~Ls~N~-L~~lp~~  198 (571)
T 3cvr_A          130 NQLTMLPE---LPALLEYINADNNQLTM-LP-ELPTSLEVLSVRNNQLTF--LPE-LP--ESLEALDVSTNL-LESLPAV  198 (571)
T ss_dssp             SCCSCCCC---CCTTCCEEECCSSCCSC-CC-CCCTTCCEEECCSSCCSC--CCC-CC--TTCCEEECCSSC-CSSCCCC
T ss_pred             CcCCCCCC---cCccccEEeCCCCccCc-CC-CcCCCcCEEECCCCCCCC--cch-hh--CCCCEEECcCCC-CCchhhH
Confidence            76 33333   57899999998843331 11 156789999999999854  444 33  889999998663 4455543


Q ss_pred             cccc-------ceEeccccccccccc---ccCCCcceEEecce
Q 014120          194 SPRL-------KELVFERCEELVEFE---LDTPNLSIFKCFNY  226 (430)
Q Consensus       194 ~~~L-------~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~  226 (430)
                      ..+|       +.|+++++ .++.+.   ...++|..+...++
T Consensus       199 ~~~L~~~~~~L~~L~Ls~N-~l~~lp~~l~~l~~L~~L~L~~N  240 (571)
T 3cvr_A          199 PVRNHHSEETEIFFRCREN-RITHIPENILSLDPTCTIILEDN  240 (571)
T ss_dssp             C--------CCEEEECCSS-CCCCCCGGGGGSCTTEEEECCSS
T ss_pred             HHhhhcccccceEEecCCC-cceecCHHHhcCCCCCEEEeeCC
Confidence            3467       88888887 666543   34566666655544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.81  E-value=4.5e-09  Score=91.57  Aligned_cols=132  Identities=17%  Similarity=0.059  Sum_probs=84.6

Q ss_pred             cccCCCCccEEEEcCccCCCCCCCCCCC-CCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc---cCCCCC
Q 014120           31 IVFYLKSIYVLDFEFCKLEPPRSTVTLF-SLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ---LLGLNK  106 (430)
Q Consensus        31 ~l~~~~~L~~L~Ls~~~~~~~~~~~~l~-~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~---l~~~~~  106 (430)
                      .+.++.+|+.|+++++.+.....+..+. +|+.|+|++|.+++-   ..+..+++|+.|++++|. ++.+.   +.++++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~i~~~~~~~~~L~~L~Ls~N~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL---DGFPLLRRLKTLLVNNNR-ICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE---CCCCCCSSCCEEECCSSC-CCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCchhHHhhhcCCCCCEEECCCCCCCcc---cccccCCCCCEEECCCCc-ccccCcchhhcCCC
Confidence            4566788899999988765433344444 889999998887542   345677788888887764 33322   234566


Q ss_pred             cCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh--HHHHHHhcCCCccceeccccc
Q 014120          107 LKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYLALHYC  184 (430)
Q Consensus       107 L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--~~l~~l~~~~p~Le~L~L~~c  184 (430)
                      |+.|++++|.  +.                 ..+....+..+++|+.|++++|.++.  ......+..+|.|+.|+++++
T Consensus        90 L~~L~L~~N~--i~-----------------~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n  150 (176)
T 1a9n_A           90 LTELILTNNS--LV-----------------ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV  150 (176)
T ss_dssp             CCEEECCSCC--CC-----------------CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred             CCEEECCCCc--CC-----------------cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence            7777766654  10                 11111246678888999999888853  111224677888888888765


Q ss_pred             c
Q 014120          185 M  185 (430)
Q Consensus       185 ~  185 (430)
                      .
T Consensus       151 ~  151 (176)
T 1a9n_A          151 K  151 (176)
T ss_dssp             C
T ss_pred             C
Confidence            4

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=98.80  E-value=1.7e-08  Score=105.03  Aligned_cols=102  Identities=19%  Similarity=0.249  Sum_probs=79.3

Q ss_pred             CceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120           12 NVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L   88 (430)
                      .+++|+  ++++....+|+ .+.++++|++|+|++|.+..  +..|.++++|++|+|++|.++.-. +..+.++++|++|
T Consensus        53 ~~~~Ld--Ls~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~-~~~f~~L~~L~~L  129 (635)
T 4g8a_A           53 STKNLD--LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA-LGAFSGLSSLQKL  129 (635)
T ss_dssp             TCCEEE--CTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEEC-GGGGTTCTTCCEE
T ss_pred             CCCEEE--eeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCC-HHHhcCCCCCCEE
Confidence            455555  55567888886 46679999999999997654  467899999999999999885421 3457899999999


Q ss_pred             EeeeCCC--CCccccCCCCCcCEEEcCCCc
Q 014120           89 NINNCPG--LKSLQLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        89 ~L~~c~~--l~~l~l~~~~~L~~L~l~~c~  116 (430)
                      ++++|..  +....+.++++|++|++++|.
T Consensus       130 ~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~  159 (635)
T 4g8a_A          130 VAVETNLASLENFPIGHLKTLKELNVAHNL  159 (635)
T ss_dssp             ECTTSCCCCSTTCCCTTCTTCCEEECCSSC
T ss_pred             ECCCCcCCCCChhhhhcCcccCeeccccCc
Confidence            9999852  333346778999999999875

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.77  E-value=7.8e-09  Score=100.86  Aligned_cols=139  Identities=19%  Similarity=0.200  Sum_probs=87.6

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCC-CCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTV-TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~-~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      ++...+....+|..+.  +.++.|+|+++.+..  +..+. ++++|++|+|++|.++... ...+.++++|++|+|++|.
T Consensus        23 l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~-~~~~~~l~~L~~L~Ls~N~   99 (361)
T 2xot_A           23 LSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFIS-SEAFVPVPNLRYLDLSSNH   99 (361)
T ss_dssp             EECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSSC
T ss_pred             EEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccC-hhhccCCCCCCEEECCCCc
Confidence            4555566777887654  468999999987654  34555 8999999999999885421 2346789999999999975


Q ss_pred             CCCcc---ccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCC-c-eecc---CCCCcCceEEccCCCCC
Q 014120           95 GLKSL---QLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP-C-EVNV---SSCKNLTHLRLDGLSIT  162 (430)
Q Consensus        95 ~l~~l---~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~-~-~~~~---~~l~~L~~L~L~~~~i~  162 (430)
                       ++.+   .+.++++|+.|++++|.  +..+.    -..++|+.|++++..+. . ...+   ..+++|+.|+|++|.++
T Consensus       100 -l~~~~~~~~~~l~~L~~L~L~~N~--i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          100 -LHTLDEFLFSDLQALEVLLLYNNH--IVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             -CCEECTTTTTTCTTCCEEECCSSC--CCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             -CCcCCHHHhCCCcCCCEEECCCCc--ccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence             3333   35567899999998864  33221    12345555555552111 0 1112   34555555555555553

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.76  E-value=3.5e-09  Score=89.49  Aligned_cols=127  Identities=28%  Similarity=0.324  Sum_probs=84.2

Q ss_pred             CCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEee
Q 014120           56 TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIK  135 (430)
Q Consensus        56 ~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~  135 (430)
                      ..++|+.|++++|.+++..++..+..+++|+.|++++|..-..-.+.++++|+.|++++|.  +..              
T Consensus        15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~--i~~--------------   78 (149)
T 2je0_A           15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKLNKLKKLELSDNR--VSG--------------   78 (149)
T ss_dssp             CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCCTTCCCCTTCCEEECCSSC--CCS--------------
T ss_pred             CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCchhhhcCCCCCEEECCCCc--ccc--------------
Confidence            4578999999999887444556667888999999988743211234456777777777664  100              


Q ss_pred             cCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc-------cccccceEecc
Q 014120          136 VYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI-------SSPRLKELVFE  203 (430)
Q Consensus       136 ~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~-------~~~~L~~L~l~  203 (430)
                        ..  +..+.++++|++|++++|.+++...+..+.++++|+.|++++++ +..++.       ..++|+.|+++
T Consensus        79 --~~--~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           79 --GL--EVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             --CT--HHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             --hH--HHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHHCCCcccccCC
Confidence              01  23345678899999999998654344667889999999998764 333322       14566666654

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=98.74  E-value=2.4e-08  Score=90.36  Aligned_cols=129  Identities=17%  Similarity=0.202  Sum_probs=93.8

Q ss_pred             CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      ..+++|++  .++....+|+ .+..+++|++|+|+++.+..  |..+.++++|++|+|++|.++.- ....+.++++|+.
T Consensus        32 ~~l~~L~l--~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~  108 (220)
T 2v9t_B           32 ETITEIRL--EQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL-PKSLFEGLFSLQL  108 (220)
T ss_dssp             TTCCEEEC--CSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             cCCCEEEC--CCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCcc-CHhHccCCCCCCE
Confidence            35565554  4456777776 45568999999999987654  57889999999999999998532 1234678999999


Q ss_pred             EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120           88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (430)
Q Consensus        88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~  162 (430)
                      |+|++|..  +..-.+.++++|+.|++++|.  +.                 ..+ ...+..+++|+.|++++|.+.
T Consensus       109 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~-----------------~~~-~~~~~~l~~L~~L~L~~N~~~  165 (220)
T 2v9t_B          109 LLLNANKINCLRVDAFQDLHNLNLLSLYDNK--LQ-----------------TIA-KGTFSPLRAIQTMHLAQNPFI  165 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CS-----------------CCC-TTTTTTCTTCCEEECCSSCEE
T ss_pred             EECCCCCCCEeCHHHcCCCCCCCEEECCCCc--CC-----------------EEC-HHHHhCCCCCCEEEeCCCCcC
Confidence            99999753  222245567888888888765  11                 111 234677899999999999873

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=98.74  E-value=1.2e-08  Score=99.44  Aligned_cols=138  Identities=17%  Similarity=0.102  Sum_probs=85.1

Q ss_pred             cEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhc-CCCCccEEEeeeCCCCCcc---ccCCCCCcCEEEcC
Q 014120           39 YVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVA-GCPLIEYININNCPGLKSL---QLLGLNKLKEIKLD  113 (430)
Q Consensus        39 ~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~-~~p~Le~L~L~~c~~l~~l---~l~~~~~L~~L~l~  113 (430)
                      +.++++++.+.. |..+  .+.++.|+|++|.++... ...+. ++++|+.|+|++|. ++.+   .+.++++|+.|+++
T Consensus        21 ~~l~c~~~~l~~iP~~~--~~~l~~L~Ls~N~l~~l~-~~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLPNVPQSL--PSYTALLDLSHNNLSRLR-AEWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCSSCCSSC--CTTCSEEECCSSCCCEEC-TTSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcCccCccC--CCCCCEEECCCCCCCccC-hhhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECC
Confidence            678888876654 4332  356999999999986432 22344 89999999999974 3333   36678999999999


Q ss_pred             CCcCCceEeEe----eccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHH-Hh---cCCCccceecccc
Q 014120          114 SNRCGLERVYI----NGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYN-QI---SELPFLEYLALHY  183 (430)
Q Consensus       114 ~c~~~l~~l~i----~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~-l~---~~~p~Le~L~L~~  183 (430)
                      +|.  +..+..    ..++|+.|++++..+.  .+..+.++++|+.|+|++|.++.  ++. .+   ..+++|+.|++++
T Consensus        97 ~N~--l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~--l~~~~~~~~~~l~~L~~L~L~~  172 (361)
T 2xot_A           97 SNH--LHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR--FPVELIKDGNKLPKLMLLDLSS  172 (361)
T ss_dssp             SSC--CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS--CCGGGTC----CTTCCEEECCS
T ss_pred             CCc--CCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe--eCHHHhcCcccCCcCCEEECCC
Confidence            874  433321    2466666666663222  12345566666666666666633  221 12   3456666666654


Q ss_pred             c
Q 014120          184 C  184 (430)
Q Consensus       184 c  184 (430)
                      +
T Consensus       173 N  173 (361)
T 2xot_A          173 N  173 (361)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.71  E-value=3.6e-10  Score=100.61  Aligned_cols=136  Identities=20%  Similarity=0.189  Sum_probs=85.8

Q ss_pred             CccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-cc
Q 014120           23 CRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QL  101 (430)
Q Consensus        23 ~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~l  101 (430)
                      +....+|..+..+++|++|+++++.+.....+.++++|++|+|++|.++.  ++..+..+++|+.|++++|. ++.+ .+
T Consensus        35 ~~l~~l~~~~~~l~~L~~L~ls~n~l~~l~~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~-l~~l~~~  111 (198)
T 1ds9_A           35 PPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQ-IASLSGI  111 (198)
T ss_dssp             TTCCCCHHHHHHTTTCSEEECSEEEESCCCCHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEE-CCCHHHH
T ss_pred             CcHhhhhHHHhcCCCCCEEECCCCCCccccccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCc-CCcCCcc
Confidence            34556666777788999999988766542367788899999999988752  34455566788888888873 2222 22


Q ss_pred             CCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChH---------HHHHHhcC
Q 014120          102 LGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDK---------WLYNQISE  172 (430)
Q Consensus       102 ~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~---------~l~~l~~~  172 (430)
                      .++++|+.|++++|.  +.                 ..+....+..+++|+.|++++|.+++.         .....+..
T Consensus       112 ~~l~~L~~L~l~~N~--i~-----------------~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~  172 (198)
T 1ds9_A          112 EKLVNLRVLYMSNNK--IT-----------------NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKR  172 (198)
T ss_dssp             HHHHHSSEEEESEEE--CC-----------------CHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHH
T ss_pred             ccCCCCCEEECCCCc--CC-----------------chhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHh
Confidence            334555555555443  00                 011012456778888888888877432         11224566


Q ss_pred             CCccceec
Q 014120          173 LPFLEYLA  180 (430)
Q Consensus       173 ~p~Le~L~  180 (430)
                      +|+|+.|+
T Consensus       173 l~~L~~Ld  180 (198)
T 1ds9_A          173 LPNLKKLD  180 (198)
T ss_dssp             CSSCSEEC
T ss_pred             CCCcEEEC
Confidence            77777776

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.69  E-value=4.1e-08  Score=88.82  Aligned_cols=128  Identities=13%  Similarity=0.140  Sum_probs=93.4

Q ss_pred             CceEEEEEecCCccccCC-cc-ccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           12 NVKELKLDVGCCRIYNLP-QI-VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~~LP-~~-l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      .+++|+  ++.+....+| .. +..+++|++|+|+++.+..  +..+.++++|++|+|++|.++... ...+.++++|++
T Consensus        33 ~~~~L~--L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~  109 (220)
T 2v70_A           33 YTAELR--LNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ-HKMFKGLESLKT  109 (220)
T ss_dssp             TCSEEE--CCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCC-GGGGTTCSSCCE
T ss_pred             CCCEEE--cCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccC-HhHhcCCcCCCE
Confidence            455444  5555666664 33 5679999999999987654  457899999999999999985431 345778999999


Q ss_pred             EEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120           88 ININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (430)
Q Consensus        88 L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~  162 (430)
                      |+|++|..  +..-.+.++++|+.|++++|.  +.                 .. .+..+..+++|+.|++++|.+.
T Consensus       110 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~--l~-----------------~~-~~~~~~~l~~L~~L~L~~N~l~  166 (220)
T 2v70_A          110 LMLRSNRITCVGNDSFIGLSSVRLLSLYDNQ--IT-----------------TV-APGAFDTLHSLSTLNLLANPFN  166 (220)
T ss_dssp             EECTTSCCCCBCTTSSTTCTTCSEEECTTSC--CC-----------------CB-CTTTTTTCTTCCEEECCSCCEE
T ss_pred             EECCCCcCCeECHhHcCCCccCCEEECCCCc--CC-----------------EE-CHHHhcCCCCCCEEEecCcCCc
Confidence            99999753  222345567888999888765  11                 11 1256778899999999999874

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.67  E-value=1.4e-08  Score=90.80  Aligned_cols=140  Identities=20%  Similarity=0.104  Sum_probs=100.6

Q ss_pred             CceEEEEEecCCccccCCccc-cCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120           12 NVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~~LP~~l-~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L   88 (430)
                      .+++|++  .++....+|... ..+++|++|+++++.+..  +..+.++++|++|+|++|.++.. ....+.++++|++|
T Consensus        29 ~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L  105 (208)
T 2o6s_A           29 QTTYLDL--ETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSL-PNGVFDKLTQLKEL  105 (208)
T ss_dssp             TCSEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEE
T ss_pred             CCcEEEc--CCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCcc-CHhHhcCccCCCEE
Confidence            4565554  445566777664 469999999999987654  34578999999999999988532 12346789999999


Q ss_pred             EeeeCCCCCcc---ccCCCCCcCEEEcCCCcCCceEeE----eeccceeEEEeecCCCCceeccCCCCcCceEEccCCCC
Q 014120           89 NINNCPGLKSL---QLLGLNKLKEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI  161 (430)
Q Consensus        89 ~L~~c~~l~~l---~l~~~~~L~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i  161 (430)
                      ++++|.. +.+   .+.++++|++|++++|.  +..+.    -..++|++|++++..     ....+++|+.|++..+.+
T Consensus       106 ~L~~N~l-~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~N~-----~~~~~~~l~~L~~~~n~~  177 (208)
T 2o6s_A          106 ALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLHDNP-----WDCTCPGIRYLSEWINKH  177 (208)
T ss_dssp             ECCSSCC-CCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSCC-----BCCCTTTTHHHHHHHHHC
T ss_pred             EcCCCcC-cccCHhHhccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEecCCC-----eecCCCCHHHHHHHHHhC
Confidence            9999753 322   24567999999999875  32222    236899999998832     224567888888877766


Q ss_pred             C
Q 014120          162 T  162 (430)
Q Consensus       162 ~  162 (430)
                      +
T Consensus       178 ~  178 (208)
T 2o6s_A          178 S  178 (208)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.67  E-value=2.9e-08  Score=86.04  Aligned_cols=97  Identities=16%  Similarity=0.145  Sum_probs=77.5

Q ss_pred             ccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeec-CChHHHHHHhcC---CCCccEEEeeeCCCCC
Q 014120           24 RIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAG---CPLIEYININNCPGLK   97 (430)
Q Consensus        24 ~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~---~p~Le~L~L~~c~~l~   97 (430)
                      ....||......-.|+.|++++|.+..  -..+.++++|++|+|++|. +++.++..+...   |++|++|+|++|..++
T Consensus        49 ~~~~LP~~~~~~~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~IT  128 (176)
T 3e4g_A           49 DYNHLPTGPLDKYKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVT  128 (176)
T ss_dssp             CGGGSCCCSTTCCCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCC
T ss_pred             ccccCCcccCCCceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCC
Confidence            467788665556689999999998544  2345789999999999995 799999888763   6899999999999877


Q ss_pred             cc---ccCCCCCcCEEEcCCCcCCceE
Q 014120           98 SL---QLLGLNKLKEIKLDSNRCGLER  121 (430)
Q Consensus        98 ~l---~l~~~~~L~~L~l~~c~~~l~~  121 (430)
                      +-   .+..+++|++|++++|. .+.+
T Consensus       129 D~Gl~~L~~~~~L~~L~L~~c~-~Itd  154 (176)
T 3e4g_A          129 DKGIIALHHFRNLKYLFLSDLP-GVKE  154 (176)
T ss_dssp             HHHHHHGGGCTTCCEEEEESCT-TCCC
T ss_pred             HHHHHHHhcCCCCCEEECCCCC-CCCc
Confidence            64   24568999999999997 4443

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.65  E-value=6.2e-08  Score=85.63  Aligned_cols=121  Identities=19%  Similarity=0.175  Sum_probs=85.3

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC-C--CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-P--RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~--~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      ++.+++....+|..++.  ++++|+++++.+.. +  ..+.++++|++|+|++|.++.. .+..+.++++|++|+|++|.
T Consensus        13 l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~   89 (192)
T 1w8a_A           13 VDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred             EEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCc-CHhHcCCcccCCEEECCCCc
Confidence            45666677888877654  89999999987654 2  2378899999999999988542 13456788899999998875


Q ss_pred             CCCcc---ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120           95 GLKSL---QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (430)
Q Consensus        95 ~l~~l---~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~  162 (430)
                      . +.+   .+.++++|++|+++++.  +..                ..  +..+..+++|+.|++++|.+.
T Consensus        90 l-~~~~~~~~~~l~~L~~L~L~~N~--l~~----------------~~--~~~~~~l~~L~~L~L~~N~l~  139 (192)
T 1w8a_A           90 I-KEISNKMFLGLHQLKTLNLYDNQ--ISC----------------VM--PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             C-CEECSSSSTTCTTCCEEECCSSC--CCE----------------EC--TTSSTTCTTCCEEECTTCCBC
T ss_pred             C-CccCHHHhcCCCCCCEEECCCCc--CCe----------------eC--HHHhhcCCCCCEEEeCCCCcc
Confidence            3 222   24556777777777654  110                01  245677888999999988875

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.63  E-value=6.7e-08  Score=85.55  Aligned_cols=121  Identities=14%  Similarity=0.165  Sum_probs=76.3

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC-
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG-   95 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~-   95 (430)
                      ++.+++....+|..+.  ++|++|+++++.+.. |..+.++++|++|+|++|.++... ...+.++++|++|+|++|.. 
T Consensus        15 l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~-~~~f~~l~~L~~L~Ls~N~l~   91 (193)
T 2wfh_A           15 VRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLS-NQSFSNMTQLLTLILSYNRLR   91 (193)
T ss_dssp             EECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCC-TTTTTTCTTCCEEECCSSCCC
T ss_pred             EEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeC-HhHccCCCCCCEEECCCCccC
Confidence            4555566777776653  578888888876554 456778888888888888774321 23466778888888877642 


Q ss_pred             -CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCC
Q 014120           96 -LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI  161 (430)
Q Consensus        96 -l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i  161 (430)
                       +..-.+.++++|+.|+++++.  +.                 ..+ ...+..+++|+.|++++|.+
T Consensus        92 ~i~~~~f~~l~~L~~L~L~~N~--l~-----------------~~~-~~~~~~l~~L~~L~L~~N~~  138 (193)
T 2wfh_A           92 CIPPRTFDGLKSLRLLSLHGND--IS-----------------VVP-EGAFNDLSALSHLAIGANPL  138 (193)
T ss_dssp             BCCTTTTTTCTTCCEEECCSSC--CC-----------------BCC-TTTTTTCTTCCEEECCSSCE
T ss_pred             EeCHHHhCCCCCCCEEECCCCC--CC-----------------eeC-hhhhhcCccccEEEeCCCCe
Confidence             222224455666666666653  10                 011 12356677788888877765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=98.62  E-value=1.2e-07  Score=86.33  Aligned_cols=128  Identities=21%  Similarity=0.139  Sum_probs=92.0

Q ss_pred             CCceEEEEEecCCccccC-CccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNL-PQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~L-P~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      .+++.|+|  +++....+ |..+..+++|++|+|+++.+..  +..+.++++|++|+|++|.++.- ....+..+++|+.
T Consensus        40 ~~L~~L~L--s~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~~l~~L~~  116 (229)
T 3e6j_A           40 TNAQILYL--HDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVL-PSAVFDRLVHLKE  116 (229)
T ss_dssp             TTCSEEEC--CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCCEEEc--CCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCcc-ChhHhCcchhhCe
Confidence            45565555  44556666 4556679999999999987654  35578999999999999988532 1334678999999


Q ss_pred             EEeeeCCCCCcc--ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120           88 ININNCPGLKSL--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (430)
Q Consensus        88 L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~  162 (430)
                      |++++|. ++.+  .+.++++|++|++++|.  +.                 ..+ ...+..+++|+.|++.+|.+.
T Consensus       117 L~Ls~N~-l~~lp~~~~~l~~L~~L~L~~N~--l~-----------------~~~-~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          117 LFMCCNK-LTELPRGIERLTHLTHLALDQNQ--LK-----------------SIP-HGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             EECCSSC-CCSCCTTGGGCTTCSEEECCSSC--CC-----------------CCC-TTTTTTCTTCCEEECTTSCBC
T ss_pred             EeccCCc-ccccCcccccCCCCCEEECCCCc--CC-----------------ccC-HHHHhCCCCCCEEEeeCCCcc
Confidence            9999975 3333  23456788888888764  11                 111 234678899999999999875

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.57  E-value=2.4e-07  Score=80.39  Aligned_cols=123  Identities=20%  Similarity=0.168  Sum_probs=82.0

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~   95 (430)
                      ++...+....+|..+.  ++|++|+++++.+..  +..+.++++|++|+|++|.++.. ....+.++++|+.|++++|..
T Consensus        12 l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~N~l   88 (177)
T 2o6r_A           12 IRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSL-PDGVFDKLTKLTILYLHENKL   88 (177)
T ss_dssp             EECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             EEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEe-ChhHccCCCccCEEECCCCCc
Confidence            3444556777886654  689999999987654  34568899999999999987532 123456788899999988742


Q ss_pred             --CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh
Q 014120           96 --LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD  163 (430)
Q Consensus        96 --l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~  163 (430)
                        +..-.+.++++|+.|+++++.  +.                 ..+ ...+..+++|+.|++++|.+..
T Consensus        89 ~~~~~~~~~~l~~L~~L~l~~N~--l~-----------------~~~-~~~~~~l~~L~~L~l~~N~~~~  138 (177)
T 2o6r_A           89 QSLPNGVFDKLTQLKELALDTNQ--LK-----------------SVP-DGIFDRLTSLQKIWLHTNPWDC  138 (177)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSC--CS-----------------CCC-TTTTTTCTTCCEEECCSSCBCC
T ss_pred             cccCHHHhhCCcccCEEECcCCc--ce-----------------EeC-HHHhcCCcccCEEEecCCCeec
Confidence              111123456777777777654  11                 111 2235667888889998888753

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.55  E-value=5.3e-08  Score=100.74  Aligned_cols=123  Identities=20%  Similarity=0.200  Sum_probs=58.9

Q ss_pred             CccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCCCc
Q 014120           37 SIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        37 ~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~  116 (430)
                      .|+.|+|+++.+...+.+.++++|+.|+|++|.++  .++..++++++|+.|+|++|..-.-..+.++++|+.|++++|.
T Consensus       442 ~L~~L~Ls~n~l~~lp~~~~l~~L~~L~Ls~N~l~--~lp~~~~~l~~L~~L~Ls~N~l~~lp~l~~l~~L~~L~Ls~N~  519 (567)
T 1dce_A          442 DVRVLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLR--ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR  519 (567)
T ss_dssp             TCSEEECTTSCCSSCCCGGGGTTCCEEECCSSCCC--CCCGGGGGCTTCCEEECCSSCCCCCGGGTTCSSCCEEECCSSC
T ss_pred             CceEEEecCCCCCCCcCccccccCcEeecCccccc--ccchhhhcCCCCCEEECCCCCCCCCcccCCCCCCcEEECCCCC
Confidence            35566666655443222555666666666666554  2233455556666666655431110123344555555555443


Q ss_pred             CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh--HHHHHHhcCCCccceec
Q 014120          117 CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYLA  180 (430)
Q Consensus       117 ~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--~~l~~l~~~~p~Le~L~  180 (430)
                        +.               + .. .+..+.++++|+.|+|++|.+++  .....++..+|+|+.|+
T Consensus       520 --l~---------------~-~~-~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          520 --LQ---------------Q-SA-AIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             --CC---------------S-SS-TTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred             --CC---------------C-CC-CcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence              00               0 00 02445566666777776666643  11223334455555553

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.49  E-value=1.1e-07  Score=82.54  Aligned_cols=124  Identities=13%  Similarity=0.084  Sum_probs=88.1

Q ss_pred             EEecCCccccCCccccCCC-CccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCC
Q 014120           18 LDVGCCRIYNLPQIVFYLK-SIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL   96 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~-~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l   96 (430)
                      |+++++....+|. +..+. +|++|+++++.+.....+.++++|++|+|++|.++.-. +.++..+++|++|++++|.. 
T Consensus        24 L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~~~l~~l~~L~~L~Ls~N~l~~~~-~~~~~~l~~L~~L~L~~N~i-  100 (176)
T 1a9n_A           24 LDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSL-  100 (176)
T ss_dssp             EECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCC-
T ss_pred             EEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcccccccCCCCCEEECCCCcccccC-cchhhcCCCCCEEECCCCcC-
Confidence            4555556667764 55554 99999999987765457889999999999999986421 23457899999999999853 


Q ss_pred             Ccc----ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCc--eeccCCCCcCceEEccCCCCCh
Q 014120           97 KSL----QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPC--EVNVSSCKNLTHLRLDGLSITD  163 (430)
Q Consensus        97 ~~l----~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~--~~~~~~l~~L~~L~L~~~~i~~  163 (430)
                      +.+    .+.++++|+.|++++|.  +.                 ..+.  ...+..+++|+.|++++|...+
T Consensus       101 ~~~~~~~~l~~l~~L~~L~l~~N~--i~-----------------~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A          101 VELGDLDPLASLKSLTYLCILRNP--VT-----------------NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCGGGGGGGGGCTTCCEEECCSSG--GG-----------------GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CcchhhHhhhcCCCCCEEEecCCC--CC-----------------CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            322    34567888888888765  10                 1110  0136678899999999988743

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.48  E-value=3.4e-08  Score=105.23  Aligned_cols=107  Identities=16%  Similarity=0.139  Sum_probs=61.9

Q ss_pred             CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCCCcCEEEcCCCcCCceEeE---eec
Q 014120           52 RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL--QLLGLNKLKEIKLDSNRCGLERVY---ING  126 (430)
Q Consensus        52 ~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~~L~~L~l~~c~~~l~~l~---i~~  126 (430)
                      ..+..+++|+.|+|++|.+..  ++.-+.++++|++|+|++|.. +.+  .+.++++|+.|++++|.  +..+.   ..+
T Consensus       218 ~~~~~l~~L~~L~Ls~n~l~~--l~~~~~~l~~L~~L~Ls~N~l-~~lp~~~~~l~~L~~L~Ls~N~--l~~lp~~~~~l  292 (727)
T 4b8c_D          218 DSKYDDQLWHALDLSNLQIFN--ISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNR--LTSLPAELGSC  292 (727)
T ss_dssp             ----CCCCCCEEECTTSCCSC--CCGGGGGCCSCSCCBCTTSCC-SCCCGGGGGGTTCCEEECTTSC--CSSCCSSGGGG
T ss_pred             hhhccCCCCcEEECCCCCCCC--CChhhcCCCCCCEEEeeCCcC-cccChhhhCCCCCCEEeCcCCc--CCccChhhcCC
Confidence            455666777777777766531  222234666777777766532 222  23455667777776654  22221   134


Q ss_pred             cceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCCh
Q 014120          127 VNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITD  163 (430)
Q Consensus       127 p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~  163 (430)
                      ++|++|++++..+. .+..+.++++|+.|+|++|.+++
T Consensus       293 ~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~  330 (727)
T 4b8c_D          293 FQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEK  330 (727)
T ss_dssp             TTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCS
T ss_pred             CCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCC
Confidence            66777777662222 23458889999999999999864

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.45  E-value=1.2e-08  Score=99.93  Aligned_cols=157  Identities=18%  Similarity=0.172  Sum_probs=92.2

Q ss_pred             CCCccEEEEcCccCCCC--C----CC-CCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc-------
Q 014120           35 LKSIYVLDFEFCKLEPP--R----ST-VTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ-------  100 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~~--~----~~-~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~-------  100 (430)
                      .++|+.|+|++|.+...  .    .+ .+.++|++|+|++|.+++.++..+...+++|+.|+|++|. +....       
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~-l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNS-LGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSC-CCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCC-CCHHHHHHHHHH
Confidence            35678888888765531  1    11 2346788888888888777766666667778888888774 22111       


Q ss_pred             c-CCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHH---HHHHhcCCCcc
Q 014120          101 L-LGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKW---LYNQISELPFL  176 (430)
Q Consensus       101 l-~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~---l~~l~~~~p~L  176 (430)
                      + ..+++|++|++++|.  +.....              ......+..+++|++|+|++|.+++..   +...+..++.|
T Consensus       150 L~~~~~~L~~L~Ls~n~--l~~~~~--------------~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L  213 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNP--LTAAGV--------------AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQL  213 (372)
T ss_dssp             HHSTTCCCCEEECCSSC--CHHHHH--------------HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCC
T ss_pred             HHhcCCccceeeCCCCC--CChHHH--------------HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCc
Confidence            1 234667777777764  111000              000112345667888888888876633   33445667778


Q ss_pred             ceeccccccccc----cccc---cccccceEecccccccc
Q 014120          177 EYLALHYCMKLR----SINI---SSPRLKELVFERCEELV  209 (430)
Q Consensus       177 e~L~L~~c~~l~----~l~~---~~~~L~~L~l~~c~~L~  209 (430)
                      +.|++++|.--.    .+..   ..++|+.|++++| .++
T Consensus       214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~  252 (372)
T 3un9_A          214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFN-ELS  252 (372)
T ss_dssp             CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTS-SCC
T ss_pred             CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCC-CCC
Confidence            888887664211    1111   2467888888877 454

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=98.41  E-value=1.7e-07  Score=82.75  Aligned_cols=124  Identities=15%  Similarity=0.147  Sum_probs=85.0

Q ss_pred             cEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC--CCccccCCCCCcCEEEcCCC
Q 014120           39 YVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG--LKSLQLLGLNKLKEIKLDSN  115 (430)
Q Consensus        39 ~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~--l~~l~l~~~~~L~~L~l~~c  115 (430)
                      ++++++++.+.. |..+  .++|++|+|++|.++.......+..+++|++|+|++|..  +..-.+.++++|+.|+++++
T Consensus        11 ~~l~~s~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N   88 (192)
T 1w8a_A           11 TTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN   88 (192)
T ss_dssp             TEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred             CEEEcCCCCcCcCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence            788999877654 4333  349999999999885432112467899999999998753  22224556788888888876


Q ss_pred             cCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccc
Q 014120          116 RCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM  185 (430)
Q Consensus       116 ~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~  185 (430)
                      .  +..                 .+ ...+.++++|++|+|++|.+++ ..+..+..+++|+.|++++++
T Consensus        89 ~--l~~-----------------~~-~~~~~~l~~L~~L~L~~N~l~~-~~~~~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A           89 K--IKE-----------------IS-NKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             C--CCE-----------------EC-SSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCC
T ss_pred             c--CCc-----------------cC-HHHhcCCCCCCEEECCCCcCCe-eCHHHhhcCCCCCEEEeCCCC
Confidence            4  111                 11 2346778999999999999854 224456678888888887544

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=98.36  E-value=7.3e-07  Score=78.78  Aligned_cols=103  Identities=15%  Similarity=0.186  Sum_probs=77.4

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L   88 (430)
                      .++++|+  +.++....+|..+..+++|++|+|+++.+..  +..+.++++|++|+|++|.++... +..+.++++|+.|
T Consensus        31 ~~l~~L~--L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L  107 (193)
T 2wfh_A           31 RDVTELY--LDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP-PRTFDGLKSLRLL  107 (193)
T ss_dssp             TTCCEEE--CCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC-TTTTTTCTTCCEE
T ss_pred             CCCCEEE--CCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC-HHHhCCCCCCCEE
Confidence            3566555  4456678899888889999999999987655  456899999999999999985431 2357789999999


Q ss_pred             EeeeCCC--CCccccCCCCCcCEEEcCCCc
Q 014120           89 NINNCPG--LKSLQLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        89 ~L~~c~~--l~~l~l~~~~~L~~L~l~~c~  116 (430)
                      +|++|..  +..-.+.++++|+.|+++++.
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          108 SLHGNDISVVPEGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             ECCSSCCCBCCTTTTTTCTTCCEEECCSSC
T ss_pred             ECCCCCCCeeChhhhhcCccccEEEeCCCC
Confidence            9999753  222224456788888887654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.34  E-value=2.5e-07  Score=80.17  Aligned_cols=43  Identities=12%  Similarity=0.155  Sum_probs=35.6

Q ss_pred             CCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc
Q 014120           57 LFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ  100 (430)
Q Consensus        57 l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~  100 (430)
                      -.+|+.|+|++|.+++.++..+ .+|++|++|+|++|..+++-.
T Consensus        60 ~~~L~~LDLs~~~Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~g  102 (176)
T 3e4g_A           60 KYKIQAIDATDSCIMSIGFDHM-EGLQYVEKIRLCKCHYIEDGC  102 (176)
T ss_dssp             CCCEEEEEEESCCCCGGGGGGG-TTCSCCCEEEEESCTTCCHHH
T ss_pred             CceEeEEeCcCCCccHHHHHHh-cCCCCCCEEEeCCCCccCHHH
Confidence            3579999999999999887765 689999999999998776543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.32  E-value=1.8e-06  Score=84.07  Aligned_cols=56  Identities=16%  Similarity=0.180  Sum_probs=28.7

Q ss_pred             CCCCccEEEEcCcc-CCCCCCCCCCCCCCEEEEeeecCChHHHHHHhc-CCCCccEEEee
Q 014120           34 YLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVA-GCPLIEYININ   91 (430)
Q Consensus        34 ~~~~L~~L~Ls~~~-~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~-~~p~Le~L~L~   91 (430)
                      .+++|+.|.|+++. ...+. + .+++|++|+|..|.++...+..+.. .+|+|+.|+|+
T Consensus       170 ~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          170 AMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             TCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             cCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            34556666665542 22111 2 2556666666666555555444432 45666666654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.30  E-value=4.4e-07  Score=87.11  Aligned_cols=71  Identities=20%  Similarity=0.242  Sum_probs=35.9

Q ss_pred             CCcCceEEccCCCCChHHHHH-HhcCCCccceeccccccccccccc----cccccc-eEeccccccccccc----ccCCC
Q 014120          148 CKNLTHLRLDGLSITDKWLYN-QISELPFLEYLALHYCMKLRSINI----SSPRLK-ELVFERCEELVEFE----LDTPN  217 (430)
Q Consensus       148 l~~L~~L~L~~~~i~~~~l~~-l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~-~L~l~~c~~L~~~~----i~~p~  217 (430)
                      |++|+.+++.+|.++  .++. .+.+|++|+.+++.+.  ++.++.    .+.+|+ .+.+.+  .++.+.    -..++
T Consensus       225 ~~~L~~l~L~~n~i~--~I~~~aF~~~~~L~~l~l~~n--i~~I~~~aF~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~  298 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT--TIPDFTFAQKKYLLKIKLPHN--LKTIGQRVFSNCGRLAGTLELPA--SVTAIEFGAFMGCDN  298 (329)
T ss_dssp             CTTCCEEECTTBCCC--EECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCEEEEECT--TCCEECTTTTTTCTT
T ss_pred             cCCCeEEECCCCCcc--eecHhhhhCCCCCCEEECCcc--cceehHHHhhCChhccEEEEEcc--cceEEchhhhhCCcc
Confidence            566677777666552  2322 4556666777666532  333332    134555 555544  333332    23355


Q ss_pred             cceEEec
Q 014120          218 LSIFKCF  224 (430)
Q Consensus       218 L~~~~~~  224 (430)
                      |+.+.+.
T Consensus       299 L~~l~l~  305 (329)
T 3sb4_A          299 LRYVLAT  305 (329)
T ss_dssp             EEEEEEC
T ss_pred             CCEEEeC
Confidence            5555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.29  E-value=1.1e-06  Score=90.91  Aligned_cols=99  Identities=20%  Similarity=0.186  Sum_probs=79.1

Q ss_pred             CceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120           12 NVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L   90 (430)
                      .++.  |+++++....+|. +..+++|+.|+|++|.+.. |..+.++++|+.|+|++|.++.  ++ .++++++|+.|+|
T Consensus       442 ~L~~--L~Ls~n~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~L  515 (567)
T 1dce_A          442 DVRV--LHLAHKDLTVLCH-LEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLL  515 (567)
T ss_dssp             TCSE--EECTTSCCSSCCC-GGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEEC
T ss_pred             CceE--EEecCCCCCCCcC-ccccccCcEeecCcccccccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEEC
Confidence            4555  4556667788996 8889999999999987665 6778999999999999999975  44 6889999999999


Q ss_pred             eeCCC--CC-ccccCCCCCcCEEEcCCCc
Q 014120           91 NNCPG--LK-SLQLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        91 ~~c~~--l~-~l~l~~~~~L~~L~l~~c~  116 (430)
                      ++|..  +. .-.+.++++|+.|++++|.
T Consensus       516 s~N~l~~~~~p~~l~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          516 CNNRLQQSAAIQPLVSCPRLVLLNLQGNS  544 (567)
T ss_dssp             CSSCCCSSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCCCCCCCCcHHHhcCCCCCEEEecCCc
Confidence            99853  22 2345677899999998875

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=98.28  E-value=1.5e-06  Score=75.04  Aligned_cols=95  Identities=19%  Similarity=0.156  Sum_probs=71.4

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~   95 (430)
                      ++.+++....+|..+.  ++|++|+|+++.+..  +..+.++++|++|+|++|.++.- ....+.++++|++|+|+++. 
T Consensus        14 l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~f~~l~~L~~L~L~~N~-   89 (170)
T 3g39_A           14 VDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVL-PAGVFDKLTQLTQLSLNDNQ-   89 (170)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-
T ss_pred             EEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCcc-ChhhccCCCCCCEEECCCCc-
Confidence            5566677888997764  889999999987654  46688999999999999988532 13346789999999999874 


Q ss_pred             CCcc---ccCCCCCcCEEEcCCCc
Q 014120           96 LKSL---QLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        96 l~~l---~l~~~~~L~~L~l~~c~  116 (430)
                      ++.+   .+.++++|+.|+++++.
T Consensus        90 l~~~~~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           90 LKSIPRGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred             cCEeCHHHhcCCCCCCEEEeCCCC
Confidence            3322   24556788888887654

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=98.26  E-value=1.8e-06  Score=74.97  Aligned_cols=96  Identities=14%  Similarity=0.116  Sum_probs=70.7

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~   95 (430)
                      ++.+++....+|..+.  ++|++|+|+++.+..  |..+.++++|++|+|++|.++.- ....+.++++|+.|+|++|..
T Consensus        17 l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~~l~~L~~L~L~~N~l   93 (174)
T 2r9u_A           17 VNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAI-PTGVFDKLTQLTQLDLNDNHL   93 (174)
T ss_dssp             EECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             EEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCcc-ChhHhCCcchhhEEECCCCcc
Confidence            4566667788898764  889999999987654  46788999999999999988542 123457889999999998742


Q ss_pred             --CCccccCCCCCcCEEEcCCCc
Q 014120           96 --LKSLQLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        96 --l~~l~l~~~~~L~~L~l~~c~  116 (430)
                        +..-.+.++++|++|+++++.
T Consensus        94 ~~l~~~~~~~l~~L~~L~L~~N~  116 (174)
T 2r9u_A           94 KSIPRGAFDNLKSLTHIYLYNNP  116 (174)
T ss_dssp             CCCCTTTTTTCTTCSEEECCSSC
T ss_pred             ceeCHHHhccccCCCEEEeCCCC
Confidence              222124556788888887654

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=1e-06  Score=84.45  Aligned_cols=141  Identities=12%  Similarity=0.113  Sum_probs=87.3

Q ss_pred             CCCccEEEEcCccC--CCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeee-----------------CCC
Q 014120           35 LKSIYVLDFEFCKL--EPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININN-----------------CPG   95 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~--~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~-----------------c~~   95 (430)
                      |++|+.|+|.+ .+  .....|.+|++|+.|++.++.++.-. ...+.+|.++..+.+..                 |..
T Consensus       100 ~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~-~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~  177 (329)
T 3sb4_A          100 KQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLL-PEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP  177 (329)
T ss_dssp             CTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEEC-TTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred             cCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccc-hhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence            79999999988 33  23467899999999999988652110 12334455555554322                 222


Q ss_pred             CC--------------------------ccccC-------------CCCCcCEEEcCCCcCCceEeEe----eccceeEE
Q 014120           96 LK--------------------------SLQLL-------------GLNKLKEIKLDSNRCGLERVYI----NGVNVHSV  132 (430)
Q Consensus        96 l~--------------------------~l~l~-------------~~~~L~~L~l~~c~~~l~~l~i----~~p~L~~L  132 (430)
                      ++                          .+.+.             .|++|+.+++..+  .+..+.-    ++++|+++
T Consensus       178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n--~i~~I~~~aF~~~~~L~~l  255 (329)
T 3sb4_A          178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKT--NATTIPDFTFAQKKYLLKI  255 (329)
T ss_dssp             CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTB--CCCEECTTTTTTCTTCCEE
T ss_pred             cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCC--CcceecHhhhhCCCCCCEE
Confidence            21                          00000             2678888888864  3444432    36788888


Q ss_pred             EeecCCCC-ceeccCCCCcCc-eEEccCCCCChHHH-HHHhcCCCccceeccc
Q 014120          133 DIKVYLEP-CEVNVSSCKNLT-HLRLDGLSITDKWL-YNQISELPFLEYLALH  182 (430)
Q Consensus       133 ~l~~~~~~-~~~~~~~l~~L~-~L~L~~~~i~~~~l-~~l~~~~p~Le~L~L~  182 (430)
                      .+...... ....|.+|++|+ .+.+.. .++  .+ +..+.+|++|+.+++.
T Consensus       256 ~l~~ni~~I~~~aF~~~~~L~~~l~l~~-~l~--~I~~~aF~~c~~L~~l~l~  305 (329)
T 3sb4_A          256 KLPHNLKTIGQRVFSNCGRLAGTLELPA-SVT--AIEFGAFMGCDNLRYVLAT  305 (329)
T ss_dssp             ECCTTCCEECTTTTTTCTTCCEEEEECT-TCC--EECTTTTTTCTTEEEEEEC
T ss_pred             ECCcccceehHHHhhCChhccEEEEEcc-cce--EEchhhhhCCccCCEEEeC
Confidence            88763211 245688899999 999977 442  22 2357788889988874

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=98.19  E-value=2.9e-07  Score=98.10  Aligned_cols=142  Identities=15%  Similarity=0.114  Sum_probs=76.3

Q ss_pred             CCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCCh--------HHHHHHhcCCCCccEEEeeeCCCCCcc--ccCCCC
Q 014120           36 KSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDD--------EVIRDMVAGCPLIEYININNCPGLKSL--QLLGLN  105 (430)
Q Consensus        36 ~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~--------~~l~~l~~~~p~Le~L~L~~c~~l~~l--~l~~~~  105 (430)
                      ..++.|+|.++.....    ....|+.++|+.+.++.        ......+..++.|+.|+|++|... .+  .+.+++
T Consensus       173 ~~~~~l~L~~n~~~~~----~~~~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~  247 (727)
T 4b8c_D          173 PLTPKIELFANGKDEA----NQALLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD  247 (727)
T ss_dssp             -----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCC
T ss_pred             CccceEEeeCCCCCcc----hhhHhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCC
Confidence            4577888877654431    11223444444444321        122455778999999999998642 22  234679


Q ss_pred             CcCEEEcCCCcCCceEeE---eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecc
Q 014120          106 KLKEIKLDSNRCGLERVY---INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLAL  181 (430)
Q Consensus       106 ~L~~L~l~~c~~~l~~l~---i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L  181 (430)
                      +|+.|++++|.  +..+.   -.+++|+.|++++..+. .+..+.++++|++|+|++|.++  .++..+.++++|+.|+|
T Consensus       248 ~L~~L~Ls~N~--l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~--~lp~~~~~l~~L~~L~L  323 (727)
T 4b8c_D          248 FLTRLYLNGNS--LTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT--TLPWEFGNLCNLQFLGV  323 (727)
T ss_dssp             SCSCCBCTTSC--CSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC--CCCSSTTSCTTCCCEEC
T ss_pred             CCCEEEeeCCc--CcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC--ccChhhhcCCCccEEeC
Confidence            99999999875  33332   24689999999883332 3456788999999999999984  55656888999999999


Q ss_pred             ccccc
Q 014120          182 HYCMK  186 (430)
Q Consensus       182 ~~c~~  186 (430)
                      +++..
T Consensus       324 ~~N~l  328 (727)
T 4b8c_D          324 EGNPL  328 (727)
T ss_dssp             TTSCC
T ss_pred             CCCcc
Confidence            87653

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.16  E-value=2.3e-07  Score=90.80  Aligned_cols=164  Identities=20%  Similarity=0.239  Sum_probs=107.3

Q ss_pred             HHHHHhCCceEEEEEecC---CccccCCccccC-CCCccEEEEcCccCCCC---CCCCCCCCCCEEEEeeecCChHHHHH
Q 014120            5 LSYAFASNVKELKLDVGC---CRIYNLPQIVFY-LKSIYVLDFEFCKLEPP---RSTVTLFSLRKLCLSFVHVDDEVIRD   77 (430)
Q Consensus         5 i~~a~~~~v~~L~L~~~~---~~~~~LP~~l~~-~~~L~~L~Ls~~~~~~~---~~~~~l~~L~~L~Ls~~~~~~~~l~~   77 (430)
                      +...+...++.++|..+.   .....+...+.. +++|++|+|++|.+...   .....+++|++|+|++|.+++.+...
T Consensus        66 l~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~  145 (372)
T 3un9_A           66 FSAEVLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKD  145 (372)
T ss_dssp             HHHHHHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHH
T ss_pred             HHHHHHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHH
Confidence            344456678877764432   112233333333 47999999999987541   22345779999999999998766554


Q ss_pred             Hh----cCCCCccEEEeeeCCCCCc-----c--ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccC
Q 014120           78 MV----AGCPLIEYININNCPGLKS-----L--QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVS  146 (430)
Q Consensus        78 l~----~~~p~Le~L~L~~c~~l~~-----l--~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~  146 (430)
                      +.    ..++.|++|+|++|. ++.     +  .+..+++|++|++++|.  +.+...              ......+.
T Consensus       146 L~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~--l~~~g~--------------~~L~~~L~  208 (372)
T 3un9_A          146 LRDLLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG--LGDEGL--------------ELLAAQLD  208 (372)
T ss_dssp             HHHHHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS--CHHHHH--------------HHHHHHGG
T ss_pred             HHHHHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC--CCcHHH--------------HHHHHHHh
Confidence            43    467899999999985 322     1  12346889999998875  111000              00012345


Q ss_pred             CCCcCceEEccCCCCChHH---HHHHhcCCCccceecccccc
Q 014120          147 SCKNLTHLRLDGLSITDKW---LYNQISELPFLEYLALHYCM  185 (430)
Q Consensus       147 ~l~~L~~L~L~~~~i~~~~---l~~l~~~~p~Le~L~L~~c~  185 (430)
                      .+++|+.|+|++|.+++..   +...+..++.|+.|++++|.
T Consensus       209 ~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~  250 (372)
T 3un9_A          209 RNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNE  250 (372)
T ss_dssp             GCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSS
T ss_pred             cCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCC
Confidence            5678999999999998754   34455678999999998765

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.13  E-value=2e-06  Score=83.65  Aligned_cols=152  Identities=14%  Similarity=0.101  Sum_probs=92.1

Q ss_pred             CCCCCCCEEEEeeecCC--------hHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcCCCcC---CceEeE
Q 014120           55 VTLFSLRKLCLSFVHVD--------DEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLDSNRC---GLERVY  123 (430)
Q Consensus        55 ~~l~~L~~L~Ls~~~~~--------~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~~c~~---~l~~l~  123 (430)
                      .++++|+.|.+......        ...+..++..+|+|+.|+|++|.++....+. .++|++|++..|.-   .+..+.
T Consensus       136 ~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l~~~~-~~~L~~L~L~~~~l~~~~l~~l~  214 (362)
T 2ra8_A          136 EKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKP-RPNLKSLEIISGGLPDSVVEDIL  214 (362)
T ss_dssp             HHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBCCSCB-CTTCSEEEEECSBCCHHHHHHHH
T ss_pred             hhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCceecccc-CCCCcEEEEecCCCChHHHHHHH
Confidence            35677777777544221        1135567788899999999887544322233 68899999876640   111111


Q ss_pred             -eeccceeEEEeec--CC---CC----c--eeccCCCCcCceEEccCCCCChHHHHHHh--cCCCccceecccccccccc
Q 014120          124 -INGVNVHSVDIKV--YL---EP----C--EVNVSSCKNLTHLRLDGLSITDKWLYNQI--SELPFLEYLALHYCMKLRS  189 (430)
Q Consensus       124 -i~~p~L~~L~l~~--~~---~~----~--~~~~~~l~~L~~L~L~~~~i~~~~l~~l~--~~~p~Le~L~L~~c~~l~~  189 (430)
                       ...|+|++|.++.  ..   ..    .  ......+++|+.|+|.+|.+.+.....+.  ..+|.|+.|+++.+. +..
T Consensus       215 ~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d  293 (362)
T 2ra8_A          215 GSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTD  293 (362)
T ss_dssp             HSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSC-CBH
T ss_pred             HccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCC-CCh
Confidence             1468899888752  11   00    0  01113578999999999998764444443  357899999996543 322


Q ss_pred             -----ccc---cccccceEecccccccc
Q 014120          190 -----INI---SSPRLKELVFERCEELV  209 (430)
Q Consensus       190 -----l~~---~~~~L~~L~l~~c~~L~  209 (430)
                           +..   ..++|+.|++++| .++
T Consensus       294 ~G~~~L~~~L~~l~~L~~L~L~~n-~i~  320 (362)
T 2ra8_A          294 EGARLLLDHVDKIKHLKFINMKYN-YLS  320 (362)
T ss_dssp             HHHHHHHTTHHHHTTCSEEECCSB-BCC
T ss_pred             HHHHHHHhhcccCCcceEEECCCC-cCC
Confidence                 221   2467888888777 344

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=98.12  E-value=5.4e-06  Score=71.73  Aligned_cols=102  Identities=20%  Similarity=0.203  Sum_probs=74.5

Q ss_pred             CCceEEEEEecCCccccCCccc-cCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNLPQIV-FYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l-~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      ..+++|++  +++....+|+.. ..+++|++|+++++.+..  +..+.++++|++|+|++|.++.. ....+..+++|+.
T Consensus        28 ~~l~~L~l--~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~  104 (177)
T 2o6r_A           28 SSATRLEL--ESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSL-PNGVFDKLTQLKE  104 (177)
T ss_dssp             TTCSEEEC--CSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC-CTTTTTTCTTCCE
T ss_pred             CCCcEEEe--CCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcccc-CHHHhhCCcccCE
Confidence            45666654  445566777664 568999999999987655  34578999999999999998532 1334678999999


Q ss_pred             EEeeeCCCCCccc---cCCCCCcCEEEcCCCc
Q 014120           88 ININNCPGLKSLQ---LLGLNKLKEIKLDSNR  116 (430)
Q Consensus        88 L~L~~c~~l~~l~---l~~~~~L~~L~l~~c~  116 (430)
                      |++++|. ++.+.   +.++++|++|+++++.
T Consensus       105 L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          105 LALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             EECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred             EECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence            9999974 33332   3456788888888764

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.97  E-value=1.6e-05  Score=78.54  Aligned_cols=194  Identities=12%  Similarity=0.161  Sum_probs=108.8

Q ss_pred             cccCCccccCCCCccEEEEcCc-cCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC-CCCCccccC
Q 014120           25 IYNLPQIVFYLKSIYVLDFEFC-KLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLL  102 (430)
Q Consensus        25 ~~~LP~~l~~~~~L~~L~Ls~~-~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~  102 (430)
                      ...++...|.-.+|+.+.+... .......|.++++|+.++|.++.++.-  +.-...|++|+.+.+... ..+..-.+.
T Consensus       146 i~~I~~~aF~~~~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~~I--~~~aF~~~~L~~l~lp~~l~~I~~~aF~  223 (401)
T 4fdw_A          146 LKSIGDMAFFNSTVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKITKL--PASTFVYAGIEEVLLPVTLKEIGSQAFL  223 (401)
T ss_dssp             CCEECTTTTTTCCCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCSEE--CTTTTTTCCCSEEECCTTCCEECTTTTT
T ss_pred             ccEECHHhcCCCCceEEEeCCCccEehHHHhhCcccCCeeecCCCcceEe--chhhEeecccCEEEeCCchheehhhHhh
Confidence            4445544444345666666552 222235677778888888876655221  111112577777777532 123333456


Q ss_pred             CCCCcCEEEcCCCcCCceEeE---eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCCh---HHH-HHHhcCCC
Q 014120          103 GLNKLKEIKLDSNRCGLERVY---INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITD---KWL-YNQISELP  174 (430)
Q Consensus       103 ~~~~L~~L~l~~c~~~l~~l~---i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~---~~l-~~l~~~~p  174 (430)
                      +|++|+.+.+..   ++..+.   +...+|+.+.+...... ....|.+|++|+.+.+.++.+..   ..+ ...+.+|+
T Consensus       224 ~~~~L~~l~l~~---~l~~I~~~aF~~~~L~~i~lp~~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~  300 (401)
T 4fdw_A          224 KTSQLKTIEIPE---NVSTIGQEAFRESGITTVKLPNGVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCP  300 (401)
T ss_dssp             TCTTCCCEECCT---TCCEECTTTTTTCCCSEEEEETTCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCT
T ss_pred             CCCCCCEEecCC---CccCccccccccCCccEEEeCCCccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCc
Confidence            778888888864   333332   22357777777552211 24567889999999998776531   112 33577889


Q ss_pred             ccceeccccccccccccc----cccccceEeccccccccccc---ccCCCcceEEeccee
Q 014120          175 FLEYLALHYCMKLRSINI----SSPRLKELVFERCEELVEFE---LDTPNLSIFKCFNYV  227 (430)
Q Consensus       175 ~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c~~L~~~~---i~~p~L~~~~~~~~~  227 (430)
                      +|+.+++.+  .+..+..    .+.+|+.+.+..  +++.+.   +..-+|+.+.+.+..
T Consensus       301 ~L~~l~l~~--~i~~I~~~aF~~c~~L~~l~lp~--~l~~I~~~aF~~~~L~~l~l~~n~  356 (401)
T 4fdw_A          301 KLARFEIPE--SIRILGQGLLGGNRKVTQLTIPA--NVTQINFSAFNNTGIKEVKVEGTT  356 (401)
T ss_dssp             TCCEECCCT--TCCEECTTTTTTCCSCCEEEECT--TCCEECTTSSSSSCCCEEEECCSS
T ss_pred             cCCeEEeCC--ceEEEhhhhhcCCCCccEEEECc--cccEEcHHhCCCCCCCEEEEcCCC
Confidence            999998862  3444332    145677776643  244332   222256666665543

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.94  E-value=4.2e-07  Score=80.50  Aligned_cols=107  Identities=20%  Similarity=0.193  Sum_probs=67.2

Q ss_pred             CCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc--cCCCCCcCEEEcCCCcCCceEeEeecccee
Q 014120           53 STVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ--LLGLNKLKEIKLDSNRCGLERVYINGVNVH  130 (430)
Q Consensus        53 ~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~--l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~  130 (430)
                      .+.++++|++|+|++|.+++  ++ .+.++++|+.|++++|. ++.+.  +..+++|+.|++++|.              
T Consensus        43 ~~~~l~~L~~L~ls~n~l~~--l~-~~~~l~~L~~L~l~~n~-l~~l~~~~~~~~~L~~L~L~~N~--------------  104 (198)
T 1ds9_A           43 TLSTLKACKHLALSTNNIEK--IS-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEELWISYNQ--------------  104 (198)
T ss_dssp             HHHHTTTCSEEECSEEEESC--CC-CHHHHTTCCEEEEEEEE-ECSCSSHHHHHHHCSEEEEEEEE--------------
T ss_pred             HHhcCCCCCEEECCCCCCcc--cc-ccccCCCCCEEECCCCC-cccccchhhcCCcCCEEECcCCc--------------
Confidence            56778889999999888754  23 45567888888888863 22111  0112344444444332              


Q ss_pred             EEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccc
Q 014120          131 SVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM  185 (430)
Q Consensus       131 ~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~  185 (430)
                              +.....+..+++|+.|++++|.+++-.....+..+++|+.|++++++
T Consensus       105 --------l~~l~~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          105 --------IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             --------CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred             --------CCcCCccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCc
Confidence                    11112456678899999999988652222456788889999887664

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=97.84  E-value=3.4e-05  Score=66.70  Aligned_cols=101  Identities=17%  Similarity=0.211  Sum_probs=69.0

Q ss_pred             ccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc---cCCCCCcCEEEcC
Q 014120           38 IYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ---LLGLNKLKEIKLD  113 (430)
Q Consensus        38 L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~---l~~~~~L~~L~l~  113 (430)
                      -+.++++++.+.. |..+  .++|++|+|++|.++.. .+..+.++++|+.|+|++|. ++.+.   +.++++|+.|+++
T Consensus        14 ~~~l~~~~n~l~~iP~~~--~~~L~~L~Ls~N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLASVPAGI--PTDKQRLWLNNNQITKL-EPGVFDHLVNLQQLYFNSNK-LTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCCccCCCc--CCCCcEEEeCCCCcccc-CHHHhcCCcCCCEEECCCCC-CCccChhHhCCcchhhEEECC
Confidence            4788998887654 4433  38999999999988542 13457788999999999874 33332   3456777777777


Q ss_pred             CCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120          114 SNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (430)
Q Consensus       114 ~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~  162 (430)
                      ++.  +.                 .++ ...+.++++|+.|+|++|.+.
T Consensus        90 ~N~--l~-----------------~l~-~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           90 DNH--LK-----------------SIP-RGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SSC--CC-----------------CCC-TTTTTTCTTCSEEECCSSCBC
T ss_pred             CCc--cc-----------------eeC-HHHhccccCCCEEEeCCCCcc
Confidence            654  11                 111 233677888999999888774

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.74  E-value=3e-05  Score=74.60  Aligned_cols=95  Identities=22%  Similarity=0.158  Sum_probs=69.6

Q ss_pred             EEecCC-ccccCCccccCCCCccEEEEcC-ccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120           18 LDVGCC-RIYNLPQIVFYLKSIYVLDFEF-CKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (430)
Q Consensus        18 L~~~~~-~~~~LP~~l~~~~~L~~L~Ls~-~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c   93 (430)
                      ++..+. ....+|. +..+++|+.|+|++ +.+..  +..+.++++|+.|+|++|.++.. .+..+.++++|+.|+|++|
T Consensus        13 v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~-~~~~~~~l~~L~~L~l~~N   90 (347)
T 2ifg_A           13 LRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-APDAFHFTPRLSRLNLSFN   90 (347)
T ss_dssp             EECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEE-CTTGGGSCSCCCEEECCSS
T ss_pred             EEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcccee-CHHHhcCCcCCCEEeCCCC
Confidence            355554 6788998 88899999999997 76654  35688999999999999998553 1345788999999999997


Q ss_pred             CCCCccc---cCCCCCcCEEEcCCCc
Q 014120           94 PGLKSLQ---LLGLNKLKEIKLDSNR  116 (430)
Q Consensus        94 ~~l~~l~---l~~~~~L~~L~l~~c~  116 (430)
                      . ++.+.   +.. ..|+.|++.++.
T Consensus        91 ~-l~~~~~~~~~~-~~L~~l~l~~N~  114 (347)
T 2ifg_A           91 A-LESLSWKTVQG-LSLQELVLSGNP  114 (347)
T ss_dssp             C-CSCCCSTTTCS-CCCCEEECCSSC
T ss_pred             c-cceeCHHHccc-CCceEEEeeCCC
Confidence            4 33332   222 237777777654

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=97.74  E-value=2.6e-05  Score=67.16  Aligned_cols=82  Identities=18%  Similarity=0.104  Sum_probs=62.3

Q ss_pred             CCceEEEEEecCCccccCCc-cccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNLPQ-IVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~-~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      ..++.|+  ++++....+|+ .+..+++|++|+|+++.+..  +..+.++++|++|+|++|.++.-. ...+..+++|+.
T Consensus        30 ~~l~~L~--L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~-~~~~~~l~~L~~  106 (170)
T 3g39_A           30 TTTQVLY--LYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSIP-RGAFDNLKSLTH  106 (170)
T ss_dssp             TTCSEEE--CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC-TTTTTTCTTCCE
T ss_pred             CCCcEEE--cCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEeC-HHHhcCCCCCCE
Confidence            4455544  55566777854 46679999999999987655  355789999999999999985321 235778999999


Q ss_pred             EEeeeCCC
Q 014120           88 ININNCPG   95 (430)
Q Consensus        88 L~L~~c~~   95 (430)
                      |+|+++..
T Consensus       107 L~L~~N~~  114 (170)
T 3g39_A          107 IWLLNNPW  114 (170)
T ss_dssp             EECCSSCB
T ss_pred             EEeCCCCC
Confidence            99999753

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.61  E-value=5.8e-05  Score=65.95  Aligned_cols=40  Identities=18%  Similarity=0.298  Sum_probs=24.0

Q ss_pred             cCCCCcCceEEc--cCCCCChHH---HHHHhcCCCccceeccccc
Q 014120          145 VSSCKNLTHLRL--DGLSITDKW---LYNQISELPFLEYLALHYC  184 (430)
Q Consensus       145 ~~~l~~L~~L~L--~~~~i~~~~---l~~l~~~~p~Le~L~L~~c  184 (430)
                      +...++|++|+|  ++|.+.+..   +...+...+.|+.|+++++
T Consensus       117 L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A          117 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            344556777777  667776643   3344455666777776544

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.29  E-value=0.0007  Score=66.63  Aligned_cols=81  Identities=7%  Similarity=0.049  Sum_probs=50.7

Q ss_pred             ccCCCCCcCEEEcCCCcC---CceEeE----eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHH-HHHh
Q 014120          100 QLLGLNKLKEIKLDSNRC---GLERVY----INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWL-YNQI  170 (430)
Q Consensus       100 ~l~~~~~L~~L~l~~c~~---~l~~l~----i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l-~~l~  170 (430)
                      .+.+|++|+.+.+..+..   ....+.    -+|++|+.+.+...... ....|.+|++|+.+.+..+ ++  .+ ...+
T Consensus       266 aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~i~~I~~~aF~~c~~L~~l~lp~~-l~--~I~~~aF  342 (401)
T 4fdw_A          266 AFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPESIRILGQGLLGGNRKVTQLTIPAN-VT--QINFSAF  342 (401)
T ss_dssp             TTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCCSCCEEEECTT-CC--EECTTSS
T ss_pred             HhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCceEEEhhhhhcCCCCccEEEECcc-cc--EEcHHhC
Confidence            456788888888765431   111221    24678888887652111 2456889999999999654 31  12 2346


Q ss_pred             cCCCccceeccccc
Q 014120          171 SELPFLEYLALHYC  184 (430)
Q Consensus       171 ~~~p~Le~L~L~~c  184 (430)
                      .+| +|+.+++.+.
T Consensus       343 ~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          343 NNT-GIKEVKVEGT  355 (401)
T ss_dssp             SSS-CCCEEEECCS
T ss_pred             CCC-CCCEEEEcCC
Confidence            678 8999998754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.09  E-value=0.00082  Score=64.37  Aligned_cols=100  Identities=18%  Similarity=0.114  Sum_probs=68.5

Q ss_pred             cEEEEcCc-cCCC-CCCCCCCCCCCEEEEee-ecCChHHHHHHhcCCCCccEEEeeeCCCCCcc---ccCCCCCcCEEEc
Q 014120           39 YVLDFEFC-KLEP-PRSTVTLFSLRKLCLSF-VHVDDEVIRDMVAGCPLIEYININNCPGLKSL---QLLGLNKLKEIKL  112 (430)
Q Consensus        39 ~~L~Ls~~-~~~~-~~~~~~l~~L~~L~Ls~-~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~l~~~~~L~~L~l  112 (430)
                      ..++.++. .+.. |. +..+++|++|+|++ |.++.- .+..+.++++|+.|+|++|. ++.+   .+.++++|+.|++
T Consensus        11 ~~v~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALDSLHH-LPGAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCHHHhcCCcCCCEEeC
Confidence            34577776 5544 56 88899999999996 887542 12457789999999999974 4433   3456788888888


Q ss_pred             CCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120          113 DSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (430)
Q Consensus       113 ~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~  162 (430)
                      +++.  +.                 .+| ...+..++ |+.|+|.+|.+.
T Consensus        88 ~~N~--l~-----------------~~~-~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           88 SFNA--LE-----------------SLS-WKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             CSSC--CS-----------------CCC-STTTCSCC-CCEEECCSSCCC
T ss_pred             CCCc--cc-----------------eeC-HHHcccCC-ceEEEeeCCCcc
Confidence            8764  11                 111 12333444 999999998875

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.06  E-value=0.00072  Score=58.86  Aligned_cols=59  Identities=14%  Similarity=0.100  Sum_probs=39.8

Q ss_pred             CCCCcCceEEccCCCCChHHHH---HHhcCCCccceecc--cccccccc-----cc---ccccccceEecccc
Q 014120          146 SSCKNLTHLRLDGLSITDKWLY---NQISELPFLEYLAL--HYCMKLRS-----IN---ISSPRLKELVFERC  205 (430)
Q Consensus       146 ~~l~~L~~L~L~~~~i~~~~l~---~l~~~~p~Le~L~L--~~c~~l~~-----l~---~~~~~L~~L~l~~c  205 (430)
                      ...++|++|+|++|.+.+....   ..+...+.|+.|++  +++. +..     +.   ...++|++|++++|
T Consensus        90 ~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~-i~~~g~~~l~~~L~~n~~L~~L~L~~n  161 (185)
T 1io0_A           90 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQP-LGNNVEMEIANMLEKNTTLLKFGYHFT  161 (185)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSC-CCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             HhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCC-CCHHHHHHHHHHHHhCCCcCEEeccCC
Confidence            3456899999999999885544   44566788999999  4333 211     11   12467888888776

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.42  E-value=0.0013  Score=60.74  Aligned_cols=84  Identities=24%  Similarity=0.279  Sum_probs=52.1

Q ss_pred             HhcCCCCccEEEeeeCCC--CCccc--cCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCce
Q 014120           78 MVAGCPLIEYININNCPG--LKSLQ--LLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTH  153 (430)
Q Consensus        78 l~~~~p~Le~L~L~~c~~--l~~l~--l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~  153 (430)
                      +..++|+|+.|+|++|.-  +..+.  +..+++|+.|+++++.  +..                 ......+.++ +|+.
T Consensus       165 ~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~--i~~-----------------~~~l~~l~~l-~L~~  224 (267)
T 3rw6_A          165 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNE--LKS-----------------ERELDKIKGL-KLEE  224 (267)
T ss_dssp             HHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSC--CCS-----------------GGGGGGGTTS-CCSE
T ss_pred             HHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCc--cCC-----------------chhhhhcccC-Ccce
Confidence            335788999999988752  22211  1246777777777654  110                 0001123334 8999


Q ss_pred             EEccCCCCCh------HHHHHHhcCCCccceecc
Q 014120          154 LRLDGLSITD------KWLYNQISELPFLEYLAL  181 (430)
Q Consensus       154 L~L~~~~i~~------~~l~~l~~~~p~Le~L~L  181 (430)
                      |+|++|.+++      .-....+..+|+|+.|+=
T Consensus       225 L~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          225 LWLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             EECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred             EEccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence            9999999864      223456778899988874

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.20  E-value=0.0022  Score=59.27  Aligned_cols=78  Identities=14%  Similarity=0.107  Sum_probs=50.8

Q ss_pred             CCCCccEEEEcCccCCC----CCCCCCCCCCCEEEEeeecCChH-HHHHHhcCCCCccEEEeeeCCCCCcc---------
Q 014120           34 YLKSIYVLDFEFCKLEP----PRSTVTLFSLRKLCLSFVHVDDE-VIRDMVAGCPLIEYININNCPGLKSL---------   99 (430)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~----~~~~~~l~~L~~L~Ls~~~~~~~-~l~~l~~~~p~Le~L~L~~c~~l~~l---------   99 (430)
                      ++++|+.|+|+++.+..    +..+..+++|+.|+|++|.+++. .+.. +..+ +|++|+|++|.--...         
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~-l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDK-IKGL-KLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGG-GTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhh-cccC-CcceEEccCCcCccccCcchhHHHH
Confidence            36788999999887654    12345788999999999888542 2222 2233 8889998887642211         


Q ss_pred             ccCCCCCcCEEEcC
Q 014120          100 QLLGLNKLKEIKLD  113 (430)
Q Consensus       100 ~l~~~~~L~~L~l~  113 (430)
                      .+..+|+|+.|+-.
T Consensus       246 il~~~P~L~~LDg~  259 (267)
T 3rw6_A          246 IRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHCTTCCEESSC
T ss_pred             HHHHCcccCeECCc
Confidence            13446888877654

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.72  E-value=0.014  Score=56.94  Aligned_cols=143  Identities=13%  Similarity=0.134  Sum_probs=70.5

Q ss_pred             CCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC-CCCccccCCCCCcCEEEc
Q 014120           34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP-GLKSLQLLGLNKLKEIKL  112 (430)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~-~l~~l~l~~~~~L~~L~l  112 (430)
                      +|..|+.+.+..........+....+|+.+.+......-.  ...+.+|+.|+.+.+.... .+..-.+.+|..++.+..
T Consensus       206 ~~~~L~~i~~~~~~~~i~~~~~~~~~l~~i~ip~~~~~i~--~~~f~~~~~l~~~~~~~~~~~i~~~~F~~~~~l~~~~~  283 (394)
T 4fs7_A          206 ECILLENMEFPNSLYYLGDFALSKTGVKNIIIPDSFTELG--KSVFYGCTDLESISIQNNKLRIGGSLFYNCSGLKKVIY  283 (394)
T ss_dssp             TCTTCCBCCCCTTCCEECTTTTTTCCCCEEEECTTCCEEC--SSTTTTCSSCCEEEECCTTCEECSCTTTTCTTCCEEEE
T ss_pred             cccccceeecCCCceEeehhhcccCCCceEEECCCceecc--cccccccccceeEEcCCCcceeeccccccccccceecc
Confidence            4667776666553221112334456777777754321000  1235577778877775432 122333445556665554


Q ss_pred             CCCcCCceEeEeeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHH-HHHhcCCCccceeccc
Q 014120          113 DSNRCGLERVYINGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWL-YNQISELPFLEYLALH  182 (430)
Q Consensus       113 ~~c~~~l~~l~i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l-~~l~~~~p~Le~L~L~  182 (430)
                      .... ........+.+|+.+.+...... ....|.+|.+|+.+.+..+ ++  .+ ...+.+|.+|+.+++.
T Consensus       284 ~~~~-i~~~~F~~~~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~~-v~--~I~~~aF~~c~~L~~i~lp  351 (394)
T 4fs7_A          284 GSVI-VPEKTFYGCSSLTEVKLLDSVKFIGEEAFESCTSLVSIDLPYL-VE--EIGKRSFRGCTSLSNINFP  351 (394)
T ss_dssp             CSSE-ECTTTTTTCTTCCEEEECTTCCEECTTTTTTCTTCCEECCCTT-CC--EECTTTTTTCTTCCEECCC
T ss_pred             Ccee-eccccccccccccccccccccceechhhhcCCCCCCEEEeCCc-cc--EEhHHhccCCCCCCEEEEC
Confidence            3211 00000112455555555441111 2345677788888877543 21  12 2245677777777774

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=95.69  E-value=0.034  Score=54.12  Aligned_cols=145  Identities=10%  Similarity=0.085  Sum_probs=74.6

Q ss_pred             CccccCCCCccEEEEcCcc-CCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCc
Q 014120           29 PQIVFYLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKL  107 (430)
Q Consensus        29 P~~l~~~~~L~~L~Ls~~~-~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L  107 (430)
                      ....+.+.+|+.+.+.... ......+.++++|+.+.+..+...-.  ...+..|+.++.+..... .+....+.+|.+|
T Consensus       223 ~~~~~~~~~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~i~--~~~F~~~~~l~~~~~~~~-~i~~~~F~~~~~L  299 (394)
T 4fs7_A          223 GDFALSKTGVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLRIG--GSLFYNCSGLKKVIYGSV-IVPEKTFYGCSSL  299 (394)
T ss_dssp             CTTTTTTCCCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCEEC--SCTTTTCTTCCEEEECSS-EECTTTTTTCTTC
T ss_pred             ehhhcccCCCceEEECCCceecccccccccccceeEEcCCCcceee--ccccccccccceeccCce-eeccccccccccc
Confidence            3444556667777665422 12224556667777776665432100  112445566665554432 1222234445555


Q ss_pred             CEEEcCCCcCCceEeE----eeccceeEEEeecCCCC-ceeccCCCCcCceEEccCCCCChHHH-HHHhcCCCccceecc
Q 014120          108 KEIKLDSNRCGLERVY----INGVNVHSVDIKVYLEP-CEVNVSSCKNLTHLRLDGLSITDKWL-YNQISELPFLEYLAL  181 (430)
Q Consensus       108 ~~L~l~~c~~~l~~l~----i~~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L~L~~~~i~~~~l-~~l~~~~p~Le~L~L  181 (430)
                      +.+.+..   .+..+.    .+|.+|+.+.+...... ....|.+|.+|+.+.+..+ ++  .+ ...+.+|++|+.+++
T Consensus       300 ~~i~l~~---~i~~I~~~aF~~c~~L~~i~lp~~v~~I~~~aF~~c~~L~~i~lp~~-l~--~I~~~aF~~C~~L~~i~l  373 (394)
T 4fs7_A          300 TEVKLLD---SVKFIGEEAFESCTSLVSIDLPYLVEEIGKRSFRGCTSLSNINFPLS-LR--KIGANAFQGCINLKKVEL  373 (394)
T ss_dssp             CEEEECT---TCCEECTTTTTTCTTCCEECCCTTCCEECTTTTTTCTTCCEECCCTT-CC--EECTTTBTTCTTCCEEEE
T ss_pred             ccccccc---ccceechhhhcCCCCCCEEEeCCcccEEhHHhccCCCCCCEEEECcc-cc--EehHHHhhCCCCCCEEEE
Confidence            5555542   222221    12455555555331111 2346788889998888654 31  12 235678888888887


Q ss_pred             c
Q 014120          182 H  182 (430)
Q Consensus       182 ~  182 (430)
                      .
T Consensus       374 p  374 (394)
T 4fs7_A          374 P  374 (394)
T ss_dssp             E
T ss_pred             C
Confidence            5

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=95.61  E-value=0.013  Score=57.05  Aligned_cols=61  Identities=16%  Similarity=0.170  Sum_probs=35.9

Q ss_pred             CCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC-CCCCccccCCCCCcCEEEcCC
Q 014120           52 RSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNKLKEIKLDS  114 (430)
Q Consensus        52 ~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~~~~~L~~L~l~~  114 (430)
                      ..|.++.+|+.+.+.....+-.  ...+.+|+.|+.+.+... ..+..-.+.+|.+|+.+.+..
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~I~--~~aF~~c~~L~~i~l~~~i~~I~~~aF~~c~~L~~i~lp~  320 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVSIG--TGAFMNCPALQDIEFSSRITELPESVFAGCISLKSIDIPE  320 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCEEC--TTTTTTCTTCCEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred             ceeeecccccEEecccccceec--CcccccccccccccCCCcccccCceeecCCCCcCEEEeCC
Confidence            4677778888887765432110  124567788888777531 223333456677777777653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=93.16  E-value=0.094  Score=50.89  Aligned_cols=122  Identities=17%  Similarity=0.190  Sum_probs=77.1

Q ss_pred             ccCCCCccEEEEcCcc-CCCCCCCCCCCCCCEEEEeeec--CChHHHHHHhcCCCCccEEEeeeC-CCCCccccCCCCCc
Q 014120           32 VFYLKSIYVLDFEFCK-LEPPRSTVTLFSLRKLCLSFVH--VDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNKL  107 (430)
Q Consensus        32 l~~~~~L~~L~Ls~~~-~~~~~~~~~l~~L~~L~Ls~~~--~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~~~~~L  107 (430)
                      +.+|.+|+.+.+.... ......|.++++|+.+.+...-  +.+    ..+.+|++|+.+++... ..+..-.+.+|.+|
T Consensus       261 F~~c~~L~~i~lp~~~~~I~~~aF~~c~~L~~i~l~~~i~~I~~----~aF~~c~~L~~i~lp~~v~~I~~~aF~~C~~L  336 (394)
T 4gt6_A          261 FDSCAYLASVKMPDSVVSIGTGAFMNCPALQDIEFSSRITELPE----SVFAGCISLKSIDIPEGITQILDDAFAGCEQL  336 (394)
T ss_dssp             TTTCSSCCEEECCTTCCEECTTTTTTCTTCCEEECCTTCCEECT----TTTTTCTTCCEEECCTTCCEECTTTTTTCTTC
T ss_pred             eeecccccEEecccccceecCcccccccccccccCCCcccccCc----eeecCCCCcCEEEeCCcccEehHhHhhCCCCC
Confidence            4458999999997643 2234678899999999997532  222    35789999999999642 23334456677888


Q ss_pred             CEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccc
Q 014120          108 KEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALH  182 (430)
Q Consensus       108 ~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~  182 (430)
                      +.+.+...   +..                 + ....|.+|.+|+.+.+.++..  . + ..+..+..|+.+.+.
T Consensus       337 ~~i~ip~s---v~~-----------------I-~~~aF~~C~~L~~i~~~~~~~--~-~-~~~~~~~~L~~i~i~  386 (394)
T 4gt6_A          337 ERIAIPSS---VTK-----------------I-PESAFSNCTALNNIEYSGSRS--Q-W-NAISTDSGLQNLPVA  386 (394)
T ss_dssp             CEEEECTT---CCB-----------------C-CGGGGTTCTTCCEEEESSCHH--H-H-HTCBCCCCC------
T ss_pred             CEEEECcc---cCE-----------------E-hHhHhhCCCCCCEEEECCcee--e-h-hhhhccCCCCEEEeC
Confidence            87777431   111                 1 135678888999998887754  1 1 234567777777764

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=92.02  E-value=0.36  Score=46.27  Aligned_cols=80  Identities=11%  Similarity=0.127  Sum_probs=49.9

Q ss_pred             cccCCCCccEEEEcCc-cCCCCCCCCCCCCCCEEEEeeec--CChHHHHHHhcCCCCccEEEeeeC-CCCCccccCCCCC
Q 014120           31 IVFYLKSIYVLDFEFC-KLEPPRSTVTLFSLRKLCLSFVH--VDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNK  106 (430)
Q Consensus        31 ~l~~~~~L~~L~Ls~~-~~~~~~~~~~l~~L~~L~Ls~~~--~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~~~~~  106 (430)
                      .+..+.+|+.+.+... .......+.++.+|+.+.+..+-  +.+    ..+.+|.+|+.+.+... ..+..-.+.+|.+
T Consensus       212 ~f~~~~~l~~i~~~~~~~~i~~~~f~~~~~L~~i~lp~~v~~I~~----~aF~~~~~l~~i~l~~~i~~i~~~aF~~c~~  287 (379)
T 4h09_A          212 GFSYGKNLKKITITSGVTTLGDGAFYGMKALDEIAIPKNVTSIGS----FLLQNCTALKTLNFYAKVKTVPYLLCSGCSN  287 (379)
T ss_dssp             TTTTCSSCSEEECCTTCCEECTTTTTTCSSCCEEEECTTCCEECT----TTTTTCTTCCEEEECCCCSEECTTTTTTCTT
T ss_pred             ccccccccceeeeccceeEEccccccCCccceEEEcCCCccEeCc----cccceeehhccccccccceeccccccccccc
Confidence            4455778888877653 22233567788888888886541  122    24667888888887542 2233334567778


Q ss_pred             cCEEEcCC
Q 014120          107 LKEIKLDS  114 (430)
Q Consensus       107 L~~L~l~~  114 (430)
                      |+.+.+..
T Consensus       288 L~~i~l~~  295 (379)
T 4h09_A          288 LTKVVMDN  295 (379)
T ss_dssp             CCEEEECC
T ss_pred             cccccccc
Confidence            88777754

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=91.96  E-value=0.29  Score=46.89  Aligned_cols=82  Identities=13%  Similarity=0.014  Sum_probs=50.3

Q ss_pred             cccCCCCccEEEEcCc-cCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC-CCCCccccCCCCCcC
Q 014120           31 IVFYLKSIYVLDFEFC-KLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC-PGLKSLQLLGLNKLK  108 (430)
Q Consensus        31 ~l~~~~~L~~L~Ls~~-~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c-~~l~~l~l~~~~~L~  108 (430)
                      .+..+.++....+... .......+..+.+|+.+.+...-..-.  ...+.+|..|+.+.+... ..+..-.+.+|.+|+
T Consensus       189 ~~~~~~~~~~~~~~~~~~~i~~~~f~~~~~l~~i~~~~~~~~i~--~~~f~~~~~L~~i~lp~~v~~I~~~aF~~~~~l~  266 (379)
T 4h09_A          189 SYPAAKTGTEFTIPSTVKTVTAYGFSYGKNLKKITITSGVTTLG--DGAFYGMKALDEIAIPKNVTSIGSFLLQNCTALK  266 (379)
T ss_dssp             ECCTTCCCSEEECCTTCCEECTTTTTTCSSCSEEECCTTCCEEC--TTTTTTCSSCCEEEECTTCCEECTTTTTTCTTCC
T ss_pred             cccccccccccccccceeEEeecccccccccceeeeccceeEEc--cccccCCccceEEEcCCCccEeCccccceeehhc
Confidence            4445667777766553 222335677889999998865421100  224668999999988653 223333455677777


Q ss_pred             EEEcCC
Q 014120          109 EIKLDS  114 (430)
Q Consensus       109 ~L~l~~  114 (430)
                      .+.+..
T Consensus       267 ~i~l~~  272 (379)
T 4h09_A          267 TLNFYA  272 (379)
T ss_dssp             EEEECC
T ss_pred             cccccc
Confidence            777653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=91.52  E-value=0.37  Score=42.00  Aligned_cols=36  Identities=11%  Similarity=-0.005  Sum_probs=21.9

Q ss_pred             CcCceEEccCCCCChHHHHH---HhcCCCccceeccccc
Q 014120          149 KNLTHLRLDGLSITDKWLYN---QISELPFLEYLALHYC  184 (430)
Q Consensus       149 ~~L~~L~L~~~~i~~~~l~~---l~~~~p~Le~L~L~~c  184 (430)
                      +.|+.|+|++|.|.+.....   .+..-..|+.|+++++
T Consensus        98 ~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A           98 PSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             SSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCC
T ss_pred             CccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCC
Confidence            46777777777777644433   3334455777777543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=89.39  E-value=0.44  Score=38.43  Aligned_cols=51  Identities=22%  Similarity=0.121  Sum_probs=33.9

Q ss_pred             EEecCCccc--cCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecC
Q 014120           18 LDVGCCRIY--NLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHV   70 (430)
Q Consensus        18 L~~~~~~~~--~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~   70 (430)
                      ++-++....  .+|..+  ..+|++|+|+++.+..  +..|..+++|++|+|++|.+
T Consensus        13 v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~   67 (130)
T 3rfe_A           13 VDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW   67 (130)
T ss_dssp             EECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred             EEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence            344444444  677543  3468888888876654  35667788888888888866

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=87.94  E-value=0.17  Score=44.20  Aligned_cols=82  Identities=13%  Similarity=0.186  Sum_probs=52.6

Q ss_pred             CCCCccEEEEcCc-cCCCC------CCCCCCCCCCEEEEeeecCChHHH---HHHhcCCCCccEEEeeeCCC----CCcc
Q 014120           34 YLKSIYVLDFEFC-KLEPP------RSTVTLFSLRKLCLSFVHVDDEVI---RDMVAGCPLIEYININNCPG----LKSL   99 (430)
Q Consensus        34 ~~~~L~~L~Ls~~-~~~~~------~~~~~l~~L~~L~Ls~~~~~~~~l---~~l~~~~p~Le~L~L~~c~~----l~~l   99 (430)
                      +-++|+.|+|+++ .+...      ..+..-+.|+.|+|++|.+++.+.   ...+..-+.|++|+|++|..    ...+
T Consensus        39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al  118 (197)
T 1pgv_A           39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL  118 (197)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence            3567899999875 44321      233456789999999998876543   34445567799999988752    1111


Q ss_pred             --ccCCCCCcCEEEcCCC
Q 014120          100 --QLLGLNKLKEIKLDSN  115 (430)
Q Consensus       100 --~l~~~~~L~~L~l~~c  115 (430)
                        .+..-..|++|+++++
T Consensus       119 a~aL~~N~tL~~L~L~n~  136 (197)
T 1pgv_A          119 LRSTLVTQSIVEFKADNQ  136 (197)
T ss_dssp             HHHTTTTCCCSEEECCCC
T ss_pred             HHHHhhCCceeEEECCCC
Confidence              1222356888988764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	430
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.42
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.42
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.26
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.26
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.24
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.23
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.18
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.18
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.17
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.17
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.14
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.1
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.07
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.05
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.05
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.05
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.89
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.85
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.84
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.83
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.72
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.66
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.48
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.43
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.42
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	98.33
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	98.32
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	98.29
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	98.29
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.05
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.03
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.71
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.68
d2ifga3	156	High affinity nerve growth factor receptor, N-term	97.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.88
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.63
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.17
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	95.55
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	94.5
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	94.3

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=2.9e-13  Score=125.77  Aligned_cols=169  Identities=17%  Similarity=0.311  Sum_probs=104.4

Q ss_pred             CCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCc---cccCCCCCcCEEEcCCCcCCceEe-----Eeecc
Q 014120           56 TLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKS---LQLLGLNKLKEIKLDSNRCGLERV-----YINGV  127 (430)
Q Consensus        56 ~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~---l~l~~~~~L~~L~l~~c~~~l~~l-----~i~~p  127 (430)
                      ...+|++|+|++|.+++..+..++.+|++|++|++++|. +..   -.+..+++|++|++++|. .+.+.     .-.+|
T Consensus        44 ~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~-l~~~~~~~l~~~~~L~~L~Ls~c~-~itd~~l~~l~~~~~  121 (284)
T d2astb2          44 SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR-LSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCS  121 (284)
T ss_dssp             CCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCB-CCHHHHHHHTTCTTCSEEECTTCB-SCCHHHHHHHHHHCT
T ss_pred             cCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccC-CCcHHHHHHhcCCCCcCccccccc-cccccccchhhHHHH
Confidence            445666666666666666666666666666666666653 221   112345666666666665 44321     11356


Q ss_pred             ceeEEEeec-CCCC---ceecc-CCCCcCceEEccCC--CCChHHHHHHhcCCCccceeccccccccccccc----cccc
Q 014120          128 NVHSVDIKV-YLEP---CEVNV-SSCKNLTHLRLDGL--SITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPR  196 (430)
Q Consensus       128 ~L~~L~l~~-~~~~---~~~~~-~~l~~L~~L~L~~~--~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~  196 (430)
                      +|++|++++ ....   ....+ ..+++|+.|+++++  .+++..+..++.+||+|+.|++++|..+..-..    ..++
T Consensus       122 ~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~~~  201 (284)
T d2astb2         122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNY  201 (284)
T ss_dssp             TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTT
T ss_pred             hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcccCc
Confidence            666666655 2221   01112 33578999999875  577788888888999999999998887643222    2578


Q ss_pred             cceEecccccccccccc----cCCCcceEEecce
Q 014120          197 LKELVFERCEELVEFEL----DTPNLSIFKCFNY  226 (430)
Q Consensus       197 L~~L~l~~c~~L~~~~i----~~p~L~~~~~~~~  226 (430)
                      |++|++++|..+++..+    ..|+|+++...|.
T Consensus       202 L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         202 LQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             CCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             CCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            99999999987765432    3467777665543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.1e-14  Score=135.52  Aligned_cols=194  Identities=17%  Similarity=0.230  Sum_probs=136.6

Q ss_pred             HHHhCCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC---CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCC
Q 014120            7 YAFASNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCP   83 (430)
Q Consensus         7 ~a~~~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~---~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p   83 (430)
                      ..+++++..+.+.  ...........+...+|++|++++|.+..   ...+.++++|++|+|++|.+++..+.. +..++
T Consensus        19 ~l~~~~~~~lrl~--~~~~~~~~~~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~-l~~~~   95 (284)
T d2astb2          19 RLLSQGVIAFRCP--RSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT-LAKNS   95 (284)
T ss_dssp             HHHHTTCSEEECT--TCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHH-HTTCT
T ss_pred             HHHhccceEeecc--ccccccchhhhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHH-HhcCC
Confidence            3445666555432  21112222334556789999999987654   234678999999999999998877655 56799


Q ss_pred             CccEEEeeeCCCCCccc----cCCCCCcCEEEcCCCcCCceEe------EeeccceeEEEeecC--CCC---ceeccCCC
Q 014120           84 LIEYININNCPGLKSLQ----LLGLNKLKEIKLDSNRCGLERV------YINGVNVHSVDIKVY--LEP---CEVNVSSC  148 (430)
Q Consensus        84 ~Le~L~L~~c~~l~~l~----l~~~~~L~~L~l~~c~~~l~~l------~i~~p~L~~L~l~~~--~~~---~~~~~~~l  148 (430)
                      +|++|++++|..++.-.    ..+|++|++|++++|. .+.+-      ...+++|+.|.++|.  .+.   ...-..+|
T Consensus        96 ~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~-~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~  174 (284)
T d2astb2          96 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF-DFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRC  174 (284)
T ss_dssp             TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT-TCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHC
T ss_pred             CCcCccccccccccccccchhhHHHHhcccccccccc-ccccccchhhhcccccccchhhhccccccccccccccccccc
Confidence            99999999999887533    2468999999999987 54322      122589999999872  222   11123578


Q ss_pred             CcCceEEccCC-CCChHHHHHHhcCCCccceeccccccccccccc----cccccceEecccc
Q 014120          149 KNLTHLRLDGL-SITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERC  205 (430)
Q Consensus       149 ~~L~~L~L~~~-~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c  205 (430)
                      ++|++|++++| .+++..+.. +..+|+|+.|++++|..+..-..    ..++|+.|++.+|
T Consensus       175 ~~L~~L~L~~~~~itd~~~~~-l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         175 PNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccccccCCCchhhhh-hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            99999999986 477655544 45799999999999987743221    2589999999998

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=1e-11  Score=110.97  Aligned_cols=182  Identities=20%  Similarity=0.182  Sum_probs=118.9

Q ss_pred             CCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-ccCCCCCcCEEEc
Q 014120           34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKL  112 (430)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~l~~~~~L~~L~l  112 (430)
                      .+++|+.|++.+|.+..-..+.++++|++|++++|.+++.  . -+..+++|+.+++++|.. +.+ .+.++++|+.+.+
T Consensus        39 ~l~~L~~L~l~~~~i~~l~~l~~l~~L~~L~ls~n~i~~~--~-~l~~l~~l~~l~~~~n~~-~~i~~l~~l~~L~~l~l  114 (227)
T d1h6ua2          39 DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDNQITDL--A-PLKNLTKITELELSGNPL-KNVSAIAGLQSIKTLDL  114 (227)
T ss_dssp             HHHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--G-GGTTCCSCCEEECCSCCC-SCCGGGTTCTTCCEEEC
T ss_pred             HcCCcCEEECCCCCCCcchhHhcCCCCcEeecCCceeecc--c-cccccccccccccccccc-ccccccccccccccccc
Confidence            3677888888887665544577788888888888877542  1 167788888888877643 222 3556788888888


Q ss_pred             CCCcCCceEeE-eeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccccccc
Q 014120          113 DSNRCGLERVY-INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSIN  191 (430)
Q Consensus       113 ~~c~~~l~~l~-i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~  191 (430)
                      +.|. ...... ...+.+..+.+.+........+.++++|+.|++.+|.+++.  . .+.++++|+.|+++++ .+..++
T Consensus       115 ~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~Ls~n-~l~~l~  189 (227)
T d1h6ua2         115 TSTQ-ITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--T-PLANLSKLTTLKADDN-KISDIS  189 (227)
T ss_dssp             TTSC-CCCCGGGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGTTCTTCCEEECCSS-CCCCCG
T ss_pred             cccc-ccccchhccccchhhhhchhhhhchhhhhccccccccccccccccccc--h-hhcccccceecccCCC-ccCCCh
Confidence            7765 111111 12456666666552222234466778888888888877541  1 1567888999998776 355554


Q ss_pred             c--cccccceEeccccccccccc-c-cCCCcceEEecc
Q 014120          192 I--SSPRLKELVFERCEELVEFE-L-DTPNLSIFKCFN  225 (430)
Q Consensus       192 ~--~~~~L~~L~l~~c~~L~~~~-i-~~p~L~~~~~~~  225 (430)
                      .  ..++|++|++++| +++++. + ..++|+.+....
T Consensus       190 ~l~~l~~L~~L~Ls~N-~lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         190 PLASLPNLIEVHLKNN-QISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGGCTTCCEEECTTS-CCCBCGGGTTCTTCCEEEEEE
T ss_pred             hhcCCCCCCEEECcCC-cCCCCcccccCCCCCEEEeeC
Confidence            3  2578889999888 677665 3 567777776653

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.26  E-value=1.5e-11  Score=109.88  Aligned_cols=183  Identities=17%  Similarity=0.174  Sum_probs=135.3

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L   90 (430)
                      .+++.+.+  .++....++ .+..+++|++|+++++.+.....+.++++|+++++++|.+++-  . .+.++++|+.+++
T Consensus        41 ~~L~~L~l--~~~~i~~l~-~l~~l~~L~~L~ls~n~i~~~~~l~~l~~l~~l~~~~n~~~~i--~-~l~~l~~L~~l~l  114 (227)
T d1h6ua2          41 DGITTLSA--FGTGVTTIE-GVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNV--S-AIAGLQSIKTLDL  114 (227)
T ss_dssp             HTCCEEEC--TTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCCSCCEEECCSCCCSCC--G-GGTTCTTCCEEEC
T ss_pred             CCcCEEEC--CCCCCCcch-hHhcCCCCcEeecCCceeecccccccccccccccccccccccc--c-ccccccccccccc
Confidence            35555554  445567775 6788999999999999876644588999999999999987542  2 3678999999999


Q ss_pred             eeCCCCCccccCCCCCcCEEEcCCCcCCceEe-EeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120           91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERV-YINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (430)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l-~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l  169 (430)
                      ++|.......+...+.+..+.+..+. ..... ...+++|++|.+.+........++++++|+.|++++|.+++  ++. 
T Consensus       115 ~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls~n~l~~--l~~-  190 (227)
T d1h6ua2         115 TSTQITDVTPLAGLSNLQVLYLDLNQ-ITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD--ISP-  190 (227)
T ss_dssp             TTSCCCCCGGGTTCTTCCEEECCSSC-CCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CGG-
T ss_pred             ccccccccchhccccchhhhhchhhh-hchhhhhccccccccccccccccccchhhcccccceecccCCCccCC--Chh-
Confidence            98876554455667889999988775 22211 23478899999988433323457889999999999999864  332 


Q ss_pred             hcCCCccceeccccccccccccc--cccccceEeccc
Q 014120          170 ISELPFLEYLALHYCMKLRSINI--SSPRLKELVFER  204 (430)
Q Consensus       170 ~~~~p~Le~L~L~~c~~l~~l~~--~~~~L~~L~l~~  204 (430)
                      ++++|+|+.|++++|+ +..++.  ..++|+.|++++
T Consensus       191 l~~l~~L~~L~Ls~N~-lt~i~~l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         191 LASLPNLIEVHLKNNQ-ISDVSPLANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGCTTCCEEECTTSC-CCBCGGGTTCTTCCEEEEEE
T ss_pred             hcCCCCCCEEECcCCc-CCCCcccccCCCCCEEEeeC
Confidence            6789999999999874 666553  256788877753

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.24  E-value=2.5e-11  Score=116.46  Aligned_cols=77  Identities=18%  Similarity=0.174  Sum_probs=43.3

Q ss_pred             CceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEee
Q 014120           12 NVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININ   91 (430)
Q Consensus        12 ~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~   91 (430)
                      ++++|.+.-  +.+..++ ++..+++|++|+++++.+.....+.++++|++|++++|.+.+.  . -++++++|+.|+++
T Consensus        45 ~l~~L~l~~--~~I~~l~-gl~~L~nL~~L~Ls~N~l~~l~~l~~L~~L~~L~L~~n~i~~i--~-~l~~l~~L~~L~~~  118 (384)
T d2omza2          45 QVTTLQADR--LGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--T-PLANLTNLTGLTLF  118 (384)
T ss_dssp             TCCEEECCS--SCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCCEEECC
T ss_pred             CCCEEECCC--CCCCCcc-ccccCCCCCEEeCcCCcCCCCccccCCcccccccccccccccc--c-cccccccccccccc
Confidence            455444422  3344443 4555667777777776654433466667777777777666432  1 15566667777666


Q ss_pred             eCC
Q 014120           92 NCP   94 (430)
Q Consensus        92 ~c~   94 (430)
                      ++.
T Consensus       119 ~~~  121 (384)
T d2omza2         119 NNQ  121 (384)
T ss_dssp             SSC
T ss_pred             ccc
Confidence            543

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=1.1e-11  Score=108.67  Aligned_cols=144  Identities=18%  Similarity=0.140  Sum_probs=87.9

Q ss_pred             CCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCCCcCEEEcC
Q 014120           34 YLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLNKLKEIKLD  113 (430)
Q Consensus        34 ~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~~L~~L~l~  113 (430)
                      .++++++|+++++.+....++..+++|++|+|++|.+++-  .. +.++++|++|++++|.......+.++++|+.++++
T Consensus        38 ~l~~l~~L~l~~~~i~~l~~l~~l~nL~~L~Ls~N~l~~~--~~-l~~l~~L~~L~l~~n~~~~~~~l~~l~~L~~L~l~  114 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQLTDI--TP-LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLF  114 (199)
T ss_dssp             HHTTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--GG-GTTCTTCCEEECCSSCCCCCGGGTTCTTCSEEECC
T ss_pred             HhcCCCEEECCCCCCCCccccccCCCcCcCccccccccCc--cc-ccCCccccccccccccccccccccccccccccccc
Confidence            4678889999888766545677889999999999888543  22 67888999999988765443346677888888888


Q ss_pred             CCcCCceEe-EeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccc
Q 014120          114 SNRCGLERV-YINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYC  184 (430)
Q Consensus       114 ~c~~~l~~l-~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c  184 (430)
                      +|. ..... ...+++|+.+++++........+.++++|+.|++.+|.+++  ++ .++++++|+.|+++++
T Consensus       115 ~~~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~~~~L~~L~l~~n~l~~--l~-~l~~l~~L~~L~ls~N  182 (199)
T d2omxa2         115 NNQ-ITDIDPLKNLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTD--LK-PLANLTTLERLDISSN  182 (199)
T ss_dssp             SSC-CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCC--CG-GGTTCTTCCEEECCSS
T ss_pred             ccc-cccccccchhhhhHHhhhhhhhhcccccccccccccccccccccccC--Cc-cccCCCCCCEEECCCC
Confidence            765 11100 01234555555554222211234555556666666555533  11 1345555555555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.4e-11  Score=112.92  Aligned_cols=96  Identities=16%  Similarity=0.149  Sum_probs=70.4

Q ss_pred             EEEEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120           16 LKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (430)
Q Consensus        16 L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c   93 (430)
                      ++++.++.....+|+.+.  +++++|+|+++.+..  +..|.++++|++|+|++|.++.-  + .++.+++|+.|++++|
T Consensus        13 ~~v~C~~~~L~~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l--~-~~~~l~~L~~L~Ls~N   87 (266)
T d1p9ag_          13 LEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--Q-VDGTLPVLGTLDLSHN   87 (266)
T ss_dssp             CEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE--E-CCSCCTTCCEEECCSS
T ss_pred             eEEEccCCCCCeeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc--c-cccccccccccccccc
Confidence            445666667788897764  689999999987654  35688999999999999988532  2 2457899999999987


Q ss_pred             CCCC-ccccCCCCCcCEEEcCCCc
Q 014120           94 PGLK-SLQLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        94 ~~l~-~l~l~~~~~L~~L~l~~c~  116 (430)
                      ..-. ...+.++++|+.|+++.+.
T Consensus        88 ~l~~~~~~~~~l~~L~~L~l~~~~  111 (266)
T d1p9ag_          88 QLQSLPLLGQTLPALTVLDVSFNR  111 (266)
T ss_dssp             CCSSCCCCTTTCTTCCEEECCSSC
T ss_pred             cccccccccccccccccccccccc
Confidence            5311 1123456888888888765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.18  E-value=3e-11  Score=106.72  Aligned_cols=161  Identities=19%  Similarity=0.193  Sum_probs=107.9

Q ss_pred             CCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-ccCCCCCcCEEEcC
Q 014120           35 LKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKLD  113 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~l~~~~~L~~L~l~  113 (430)
                      +++|+.|+++++.+....++..+++|++|+|++|.+++-  . -++.+++|+.|++++|. ++.+ .+.++++|+.|++.
T Consensus        45 L~~L~~L~l~~~~i~~l~~l~~l~~L~~L~L~~n~i~~l--~-~~~~l~~L~~L~l~~n~-i~~l~~l~~l~~L~~L~l~  120 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQGIQYLPNVTKLFLNGNKLTDI--K-PLANLKNLGWLFLDENK-VKDLSSLKDLKKLKSLSLE  120 (210)
T ss_dssp             HHTCCEEECTTSCCCCCTTGGGCTTCCEEECCSSCCCCC--G-GGTTCTTCCEEECCSSC-CCCGGGGTTCTTCCEEECT
T ss_pred             hcCccEEECcCCCCCCchhHhhCCCCCEEeCCCccccCc--c-ccccCcccccccccccc-ccccccccccccccccccc
Confidence            567888888887766544567788888888888877542  2 24678888888888764 4433 35667888888888


Q ss_pred             CCc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc
Q 014120          114 SNR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI  192 (430)
Q Consensus       114 ~c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~  192 (430)
                      +|. ..+.. -...++++.+.+++........+..+++|+.+++++|.+++  ++. +.++++|+.|+++++. ++.++.
T Consensus       121 ~~~~~~~~~-l~~l~~l~~l~~~~n~l~~~~~~~~l~~L~~l~l~~n~l~~--i~~-l~~l~~L~~L~Ls~N~-i~~l~~  195 (210)
T d1h6ta2         121 HNGISDING-LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISD--IVP-LAGLTKLQNLYLSKNH-ISDLRA  195 (210)
T ss_dssp             TSCCCCCGG-GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCC--CGG-GTTCTTCCEEECCSSC-CCBCGG
T ss_pred             ccccccccc-ccccccccccccccccccccccccccccccccccccccccc--ccc-ccCCCCCCEEECCCCC-CCCChh
Confidence            765 11111 12356777777766333223446678889999999998854  322 6788999999998763 555542


Q ss_pred             --cccccceEeccc
Q 014120          193 --SSPRLKELVFER  204 (430)
Q Consensus       193 --~~~~L~~L~l~~  204 (430)
                        ..++|+.|++++
T Consensus       196 l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         196 LAGLKNLDVLELFS  209 (210)
T ss_dssp             GTTCTTCSEEEEEE
T ss_pred             hcCCCCCCEEEccC
Confidence              246777777653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=3.6e-11  Score=106.18  Aligned_cols=153  Identities=18%  Similarity=0.170  Sum_probs=90.2

Q ss_pred             cCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc
Q 014120           21 GCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ  100 (430)
Q Consensus        21 ~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~  100 (430)
                      ..+....++ .+..+++|++|+++++.+.....+.++++|++|++++|.+++-  + .+.++++|+.|++++|..-..-.
T Consensus        54 ~~~~i~~l~-~l~~l~~L~~L~L~~n~i~~l~~~~~l~~L~~L~l~~n~i~~l--~-~l~~l~~L~~L~l~~~~~~~~~~  129 (210)
T d1h6ta2          54 NNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDL--S-SLKDLKKLKSLSLEHNGISDING  129 (210)
T ss_dssp             TTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCG--G-GGTTCTTCCEEECTTSCCCCCGG
T ss_pred             cCCCCCCch-hHhhCCCCCEEeCCCccccCccccccCcccccccccccccccc--c-ccccccccccccccccccccccc
Confidence            334444554 3556777777777777655433456677777777777776542  2 25567777777777765433233


Q ss_pred             cCCCCCcCEEEcCCCcCCceEe--EeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccce
Q 014120          101 LLGLNKLKEIKLDSNRCGLERV--YINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEY  178 (430)
Q Consensus       101 l~~~~~L~~L~l~~c~~~l~~l--~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~  178 (430)
                      +.++++++.+.+..+.  +...  ...+++|+.+++++........+.++++|+.|++++|.+++  ++ .+.++++|+.
T Consensus       130 l~~l~~l~~l~~~~n~--l~~~~~~~~l~~L~~l~l~~n~l~~i~~l~~l~~L~~L~Ls~N~i~~--l~-~l~~l~~L~~  204 (210)
T d1h6ta2         130 LVHLPQLESLYLGNNK--ITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD--LR-ALAGLKNLDV  204 (210)
T ss_dssp             GGGCTTCCEEECCSSC--CCCCGGGGGCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCB--CG-GGTTCTTCSE
T ss_pred             cccccccccccccccc--ccccccccccccccccccccccccccccccCCCCCCEEECCCCCCCC--Ch-hhcCCCCCCE
Confidence            4556677777776653  2211  11256777777766332212245667777777777777743  33 2556777777


Q ss_pred             eccc
Q 014120          179 LALH  182 (430)
Q Consensus       179 L~L~  182 (430)
                      |+++
T Consensus       205 L~Ls  208 (210)
T d1h6ta2         205 LELF  208 (210)
T ss_dssp             EEEE
T ss_pred             EEcc
Confidence            7764

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.17  E-value=3.9e-11  Score=105.04  Aligned_cols=158  Identities=16%  Similarity=0.172  Sum_probs=118.3

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEe
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYINI   90 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L   90 (430)
                      .++++|.+  .++....++ .+..+++|++|++++|.+.....+.++++|++|++++|.+..-  + .+++++.|+.|++
T Consensus        40 ~~l~~L~l--~~~~i~~l~-~l~~l~nL~~L~Ls~N~l~~~~~l~~l~~L~~L~l~~n~~~~~--~-~l~~l~~L~~L~l  113 (199)
T d2omxa2          40 DQVTTLQA--DRLGIKSID-GVEYLNNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADI--T-PLANLTNLTGLTL  113 (199)
T ss_dssp             TTCCEEEC--TTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCCC--G-GGTTCTTCSEEEC
T ss_pred             cCCCEEEC--CCCCCCCcc-ccccCCCcCcCccccccccCcccccCCcccccccccccccccc--c-ccccccccccccc
Confidence            46666554  444566665 5677999999999999876644588999999999999987442  1 2678999999999


Q ss_pred             eeCCCCCccccCCCCCcCEEEcCCCcCCceEeE--eeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHH
Q 014120           91 NNCPGLKSLQLLGLNKLKEIKLDSNRCGLERVY--INGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYN  168 (430)
Q Consensus        91 ~~c~~l~~l~l~~~~~L~~L~l~~c~~~l~~l~--i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~  168 (430)
                      ++|.......+.++++|+.+++++|.  +..+.  ..+++++.|++.+........++++++|+.|++++|.+++  ++ 
T Consensus       114 ~~~~~~~~~~~~~l~~L~~L~l~~n~--l~~~~~l~~~~~L~~L~l~~n~l~~l~~l~~l~~L~~L~ls~N~i~~--i~-  188 (199)
T d2omxa2         114 FNNQITDIDPLKNLTNLNRLELSSNT--ISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD--IS-  188 (199)
T ss_dssp             CSSCCCCCGGGTTCTTCSEEECCSSC--CCCCGGGTTCTTCSEEECCSSCCCCCGGGTTCTTCCEEECCSSCCCC--CG-
T ss_pred             cccccccccccchhhhhHHhhhhhhh--hcccccccccccccccccccccccCCccccCCCCCCEEECCCCCCCC--Cc-
Confidence            99877655567778999999999875  33222  2368999999988433322357899999999999999965  32 


Q ss_pred             HhcCCCcccee
Q 014120          169 QISELPFLEYL  179 (430)
Q Consensus       169 l~~~~p~Le~L  179 (430)
                      .+.++++|++|
T Consensus       189 ~l~~L~~L~~L  199 (199)
T d2omxa2         189 VLAKLTNLESL  199 (199)
T ss_dssp             GGGGCTTCSEE
T ss_pred             cccCCCCCCcC
Confidence            25667777765

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.14  E-value=9.9e-11  Score=109.11  Aligned_cols=63  Identities=19%  Similarity=0.193  Sum_probs=29.2

Q ss_pred             cCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccccccccc---ccccceEeccccccccc
Q 014120          145 VSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELVE  210 (430)
Q Consensus       145 ~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c~~L~~  210 (430)
                      +.+++.++.|++++|.+++. .+..+.++++|++|+++++ .+..++..   .++|+.|+++++ +++.
T Consensus       191 ~~~~~~l~~L~~s~n~l~~~-~~~~~~~l~~L~~L~L~~N-~L~~lp~~l~~l~~L~~L~Ls~N-~i~~  256 (305)
T d1xkua_         191 LKGLNNLAKLGLSFNSISAV-DNGSLANTPHLRELHLNNN-KLVKVPGGLADHKYIQVVYLHNN-NISA  256 (305)
T ss_dssp             GTTCTTCCEEECCSSCCCEE-CTTTGGGSTTCCEEECCSS-CCSSCCTTTTTCSSCCEEECCSS-CCCC
T ss_pred             hhcccccccccccccccccc-ccccccccccceeeecccc-cccccccccccccCCCEEECCCC-ccCc
Confidence            44455555555555555321 1223445555555555544 23333321   345555555554 3443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.7e-11  Score=111.03  Aligned_cols=169  Identities=20%  Similarity=0.184  Sum_probs=106.2

Q ss_pred             CCceEEEEEecCCccccCCcc-ccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEE
Q 014120           11 SNVKELKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYIN   89 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~-l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~   89 (430)
                      .++++|+  ++++....+|.. +.++++|++|+|+++.+.....+..+++|++|+|++|.++..  ...+.++++|+.|+
T Consensus        31 ~~l~~L~--Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~~~~l~~L~~L~Ls~N~l~~~--~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILH--LSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSL--PLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEE--CTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECCSCCTTCCEEECCSSCCSSC--CCCTTTCTTCCEEE
T ss_pred             cCCCEEE--CcCCcCCCcCHHHhhcccccccccccccccccccccccccccccccccccccccc--cccccccccccccc
Confidence            4566655  555677888865 556999999999999876533467899999999999988542  34567899999999


Q ss_pred             eeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHH
Q 014120           90 INNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLY  167 (430)
Q Consensus        90 L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~  167 (430)
                      ++++..  +.......+.+++.|.+.++.  +..+                 + ...+..+++|+.+++++|.++. ..+
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~--l~~l-----------------~-~~~~~~l~~l~~l~l~~N~l~~-~~~  165 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNE--LKTL-----------------P-PGLLTPTPKLEKLSLANNNLTE-LPA  165 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSC--CCCC-----------------C-TTTTTTCTTCCEEECTTSCCSC-CCT
T ss_pred             ccccccceeeccccccccccccccccccc--ccee-----------------c-cccccccccchhcccccccccc-cCc
Confidence            998764  223334456788888888764  2111                 1 1233445556666666665532 112


Q ss_pred             HHhcCCCccceecccccccccccccc---ccccceEecccc
Q 014120          168 NQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERC  205 (430)
Q Consensus       168 ~l~~~~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c  205 (430)
                      ..+..+++|+.|+++++. ++.++..   .++|+.|+++++
T Consensus       166 ~~~~~l~~L~~L~Ls~N~-L~~lp~~~~~~~~L~~L~L~~N  205 (266)
T d1p9ag_         166 GLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN  205 (266)
T ss_dssp             TTTTTCTTCCEEECCSSC-CCCCCTTTTTTCCCSEEECCSC
T ss_pred             cccccccccceeecccCC-CcccChhHCCCCCCCEEEecCC
Confidence            234455566666665443 3444332   345566666543

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.07  E-value=1.4e-10  Score=107.99  Aligned_cols=186  Identities=13%  Similarity=0.137  Sum_probs=104.8

Q ss_pred             CCceEEEEEecCCccccCCcc-ccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccE
Q 014120           11 SNVKELKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEY   87 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~-l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~   87 (430)
                      .+++.|+  ++.+....+|+. +.++++|++|+++++.+..  |..+.++++|++|++++|.++.-  +  ....+.++.
T Consensus        31 ~~l~~L~--Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l--~--~~~~~~l~~  104 (305)
T d1xkua_          31 PDTALLD--LQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--P--EKMPKTLQE  104 (305)
T ss_dssp             TTCCEEE--CCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--C--SSCCTTCCE
T ss_pred             CCCCEEE--CcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC--c--cchhhhhhh
Confidence            3455544  444567777764 4557788888887765443  45577777888888777755210  0  011122333


Q ss_pred             EEeeeCCC------------------------C----CccccCCCCCcCEEEcCCCc-C--------CceEeE-------
Q 014120           88 ININNCPG------------------------L----KSLQLLGLNKLKEIKLDSNR-C--------GLERVY-------  123 (430)
Q Consensus        88 L~L~~c~~------------------------l----~~l~l~~~~~L~~L~l~~c~-~--------~l~~l~-------  123 (430)
                      |++.++..                        .    ..-.+.++++|+.+++..|. .        .+..+.       
T Consensus       105 L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~~~~~L~~L~l~~n~~~  184 (305)
T d1xkua_         105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKIT  184 (305)
T ss_dssp             EECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSSCCTTCSEEECTTSCCC
T ss_pred             hhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcccCCccCEEECCCCcCC
Confidence            33222110                        0    00011123344444444332 0        111111       


Q ss_pred             -------eeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccccccccccc--
Q 014120          124 -------INGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINI--  192 (430)
Q Consensus       124 -------i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~--  192 (430)
                             ..++.++.|.+++..+.  ....+.++++|++|+|++|.++  .++..+.++++|+.|++++++ ++.++.  
T Consensus       185 ~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~--~lp~~l~~l~~L~~L~Ls~N~-i~~i~~~~  261 (305)
T d1xkua_         185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV--KVPGGLADHKYIQVVYLHNNN-ISAIGSND  261 (305)
T ss_dssp             EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS--SCCTTTTTCSSCCEEECCSSC-CCCCCTTS
T ss_pred             CCChhHhhccccccccccccccccccccccccccccceeeeccccccc--ccccccccccCCCEEECCCCc-cCccChhh
Confidence                   12456777777663222  1345678899999999999994  455567889999999998764 555432  


Q ss_pred             --------cccccceEecccc
Q 014120          193 --------SSPRLKELVFERC  205 (430)
Q Consensus       193 --------~~~~L~~L~l~~c  205 (430)
                              ...+|+.|+++++
T Consensus       262 f~~~~~~~~~~~L~~L~L~~N  282 (305)
T d1xkua_         262 FCPPGYNTKKASYSGVSLFSN  282 (305)
T ss_dssp             SSCSSCCTTSCCCSEEECCSS
T ss_pred             ccCcchhcccCCCCEEECCCC
Confidence                    2467888888887

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.3e-10  Score=105.60  Aligned_cols=204  Identities=17%  Similarity=0.133  Sum_probs=135.5

Q ss_pred             EEEEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120           16 LKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (430)
Q Consensus        16 L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c   93 (430)
                      +.++.+......+|..+.  +++++|+|+++.+..  +..+.++++|+.|+++++.+.... .....+++.++.+....+
T Consensus        14 ~~v~c~~~~L~~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~-~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          14 VTTSCPQQGLQAVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID-AAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             CEEECCSSCCSSCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEEC-TTTTTTCTTCCEEECCSC
T ss_pred             eEEEcCCCCCCccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccc-cccccccccccccccccc
Confidence            444555555677887654  678999999987654  356899999999999999874421 234567889999988776


Q ss_pred             CCCCcc---ccCCCCCcCEEEcCCCcCCceEe----EeeccceeEEEeecCCCC--ceeccCCCCcCceEEccCCCCChH
Q 014120           94 PGLKSL---QLLGLNKLKEIKLDSNRCGLERV----YINGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDGLSITDK  164 (430)
Q Consensus        94 ~~l~~l---~l~~~~~L~~L~l~~c~~~l~~l----~i~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~~~i~~~  164 (430)
                      ..++.+   .+.++++|++|++..+.  +..+    ....++|+.+++.+..+.  ....+..+++|+.|++++|.+.. 
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~--~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-  167 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCG--LQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-  167 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-
T ss_pred             cccccccchhhcccccCCEEecCCcc--cccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccc-
Confidence            665544   46677899999998875  2222    112567888888773322  12346777888889998888742 


Q ss_pred             HHHHHhcCCCccceeccccccccccccc---cccccceEeccccccccccc---c-cCCCcceEEecce
Q 014120          165 WLYNQISELPFLEYLALHYCMKLRSINI---SSPRLKELVFERCEELVEFE---L-DTPNLSIFKCFNY  226 (430)
Q Consensus       165 ~l~~l~~~~p~Le~L~L~~c~~l~~l~~---~~~~L~~L~l~~c~~L~~~~---i-~~p~L~~~~~~~~  226 (430)
                      ..+..+.+++.|+.++++++......+.   ..++|+.|+++++ .++.+.   + ..++|.++...|+
T Consensus       168 l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N-~i~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN-NLSALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             ECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCHHHHTTCTTCCEEECCSS
T ss_pred             cchhhhccccccchhhhhhccccccChhHhhhhhhccccccccc-ccccccccccccccccCEEEecCC
Confidence            1234566788888888876653322222   2467888888877 454432   2 3456666655544

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.05  E-value=3.1e-10  Score=108.54  Aligned_cols=192  Identities=17%  Similarity=0.141  Sum_probs=122.3

Q ss_pred             ccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCCC
Q 014120           26 YNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGLN  105 (430)
Q Consensus        26 ~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~~  105 (430)
                      ...+.....+++++.++++++.+.........++|++|++++|.+++-  + .+..+++|+.|++++|..-....+.+++
T Consensus       187 ~~~~~~~~~l~~~~~l~l~~n~i~~~~~~~~~~~L~~L~l~~n~l~~~--~-~l~~l~~L~~L~l~~n~l~~~~~~~~~~  263 (384)
T d2omza2         187 VSDISVLAKLTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--G-TLASLTNLTDLDLANNQISNLAPLSGLT  263 (384)
T ss_dssp             CCCCGGGGGCTTCSEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGGGCTTCSEEECCSSCCCCCGGGTTCT
T ss_pred             cccccccccccccceeeccCCccCCCCcccccCCCCEEECCCCCCCCc--c-hhhcccccchhccccCccCCCCcccccc
Confidence            333445566788888888887655433345677888888888877542  1 3567788888888887543333566678


Q ss_pred             CcCEEEcCCCc-CCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceeccccc
Q 014120          106 KLKEIKLDSNR-CGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYC  184 (430)
Q Consensus       106 ~L~~L~l~~c~-~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c  184 (430)
                      +|++|+++++. ..+.. ....+.++.+...+........+..+++++.|++++|.+++  ++ .+..+|+|+.|++++|
T Consensus       264 ~L~~L~l~~~~l~~~~~-~~~~~~l~~l~~~~n~l~~~~~~~~~~~l~~L~ls~n~l~~--l~-~l~~l~~L~~L~L~~n  339 (384)
T d2omza2         264 KLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISD--IS-PVSSLTKLQRLFFANN  339 (384)
T ss_dssp             TCSEEECCSSCCCCCGG-GTTCTTCSEEECCSSCCSCCGGGGGCTTCSEEECCSSCCSC--CG-GGGGCTTCCEEECCSS
T ss_pred             cCCEeeccCcccCCCCc-cccccccccccccccccccccccchhcccCeEECCCCCCCC--Cc-ccccCCCCCEEECCCC
Confidence            88888887664 11111 11245566666655222222346677888888888888854  22 2567888888888877


Q ss_pred             cccccccc--cccccceEeccccccccccc-c-cCCCcceEEecce
Q 014120          185 MKLRSINI--SSPRLKELVFERCEELVEFE-L-DTPNLSIFKCFNY  226 (430)
Q Consensus       185 ~~l~~l~~--~~~~L~~L~l~~c~~L~~~~-i-~~p~L~~~~~~~~  226 (430)
                      + ++.++.  ..++|+.|+++++ +++++. + ..++|+.+...++
T Consensus       340 ~-l~~l~~l~~l~~L~~L~l~~N-~l~~l~~l~~l~~L~~L~L~~N  383 (384)
T d2omza2         340 K-VSDVSSLANLTNINWLSAGHN-QISDLTPLANLTRITQLGLNDQ  383 (384)
T ss_dssp             C-CCCCGGGGGCTTCCEEECCSS-CCCBCGGGTTCTTCSEEECCCE
T ss_pred             C-CCCChhHcCCCCCCEEECCCC-cCCCChhhccCCCCCEeeCCCC
Confidence            3 444432  2578888888877 666554 2 3467777766543

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.05  E-value=8.4e-11  Score=110.07  Aligned_cols=192  Identities=20%  Similarity=0.160  Sum_probs=120.9

Q ss_pred             ceEEEEEecC-CccccCCccccCCCCccEEEEcC-ccCC--CCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120           13 VKELKLDVGC-CRIYNLPQIVFYLKSIYVLDFEF-CKLE--PPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (430)
Q Consensus        13 v~~L~L~~~~-~~~~~LP~~l~~~~~L~~L~Ls~-~~~~--~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L   88 (430)
                      |.+++|.-.. .....+|+.+.++++|++|+|++ +.+.  .|..+.++++|++|+|++|.+... ....+..++.|+.+
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~-~~~~~~~~~~L~~l  130 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGA-IPDFLSQIKTLVTL  130 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEE-CCGGGGGCTTCCEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccccc-ccccccchhhhccc
Confidence            4444443322 23447999999999999999997 4443  367889999999999999988432 13346678899999


Q ss_pred             EeeeCCCCCc--cccCCCCCcCEEEcCCCcCCceEe--------------Eeec-------------cceeEEEeecCCC
Q 014120           89 NINNCPGLKS--LQLLGLNKLKEIKLDSNRCGLERV--------------YING-------------VNVHSVDIKVYLE  139 (430)
Q Consensus        89 ~L~~c~~l~~--l~l~~~~~L~~L~l~~c~~~l~~l--------------~i~~-------------p~L~~L~l~~~~~  139 (430)
                      +++++.....  -.+.++++++.++++++. .-..+              ....             .....+++.....
T Consensus       131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~-l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~  209 (313)
T d1ogqa_         131 DFSYNALSGTLPPSISSLPNLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNML  209 (313)
T ss_dssp             ECCSSEEESCCCGGGGGCTTCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEE
T ss_pred             ccccccccccCchhhccCcccceeeccccc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            9988754332  235567788888887664 11111              1100             0111222222000


Q ss_pred             --CceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccccccccc---ccccceEecccccccc
Q 014120          140 --PCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS---SPRLKELVFERCEELV  209 (430)
Q Consensus       140 --~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~~---~~~L~~L~l~~c~~L~  209 (430)
                        ..+..+..+++++.+++.++.++.. + ..+..++.|+.|++++++-...+|..   .++|++|+++++ +++
T Consensus       210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~-~-~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N-~l~  281 (313)
T d1ogqa_         210 EGDASVLFGSDKNTQKIHLAKNSLAFD-L-GKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN-NLC  281 (313)
T ss_dssp             EECCGGGCCTTSCCSEEECCSSEECCB-G-GGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSS-EEE
T ss_pred             ccccccccccccccccccccccccccc-c-cccccccccccccCccCeecccCChHHhCCCCCCEEECcCC-ccc
Confidence              0123345667888888888877432 2 23567788888988877654455543   467888888887 554

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.89  E-value=1.2e-09  Score=100.67  Aligned_cols=188  Identities=16%  Similarity=0.089  Sum_probs=130.3

Q ss_pred             CCceEEEEEecCCccccCCcc-ccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeec-CChHHHHHHhcCCCCcc
Q 014120           11 SNVKELKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIE   86 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~-l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le   86 (430)
                      .++++|+  ++++....+|+. +.++++|++|+++++.+..  +..+.+++.++.+....+. ++.. ....+.++++|+
T Consensus        32 ~~~~~L~--Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l-~~~~~~~l~~L~  108 (284)
T d1ozna_          32 AASQRIF--LHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV-DPATFHGLGRLH  108 (284)
T ss_dssp             TTCSEEE--CTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCC-CTTTTTTCTTCC
T ss_pred             CCCCEEE--CcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccc-cchhhcccccCC
Confidence            3566555  555678888875 5669999999999976543  4566778899998876443 3221 133467889999


Q ss_pred             EEEeeeCCC--CCccccCCCCCcCEEEcCCCcCCceEeE---e-eccceeEEEeecCCCC--ceeccCCCCcCceEEccC
Q 014120           87 YININNCPG--LKSLQLLGLNKLKEIKLDSNRCGLERVY---I-NGVNVHSVDIKVYLEP--CEVNVSSCKNLTHLRLDG  158 (430)
Q Consensus        87 ~L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~---i-~~p~L~~L~l~~~~~~--~~~~~~~l~~L~~L~L~~  158 (430)
                      +|+++++..  +.......+.+|+.+++.++.  +..+.   + ..++|+.|++++..+.  ....+.++++|+.+++.+
T Consensus       109 ~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~--l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~  186 (284)
T d1ozna_         109 TLHLDRCGLQELGPGLFRGLAALQYLYLQDNA--LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQ  186 (284)
T ss_dssp             EEECTTSCCCCCCTTTTTTCTTCCEEECCSSC--CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             EEecCCcccccccccccchhcccchhhhcccc--ccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhh
Confidence            999998763  233334456889999998764  33332   2 3578899998883332  234578899999999999


Q ss_pred             CCCChHHHHHHhcCCCccceeccccccccccccc----cccccceEecccc
Q 014120          159 LSITDKWLYNQISELPFLEYLALHYCMKLRSINI----SSPRLKELVFERC  205 (430)
Q Consensus       159 ~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~----~~~~L~~L~l~~c  205 (430)
                      |.+++ ..+..+.++++|+.|+++++.- ..++.    ..++|+.|++++.
T Consensus       187 N~l~~-i~~~~f~~l~~L~~L~l~~N~i-~~~~~~~~~~~~~L~~L~l~~N  235 (284)
T d1ozna_         187 NRVAH-VHPHAFRDLGRLMTLYLFANNL-SALPTEALAPLRALQYLRLNDN  235 (284)
T ss_dssp             SCCCE-ECTTTTTTCTTCCEEECCSSCC-SCCCHHHHTTCTTCCEEECCSS
T ss_pred             ccccc-cChhHhhhhhhccccccccccc-ccccccccccccccCEEEecCC
Confidence            98864 2355678899999999986653 33322    3577888888875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.85  E-value=1.2e-09  Score=87.81  Aligned_cols=118  Identities=22%  Similarity=0.267  Sum_probs=60.6

Q ss_pred             EEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCcc-ccCCCCCcCEEEcCCCcCC
Q 014120           40 VLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSL-QLLGLNKLKEIKLDSNRCG  118 (430)
Q Consensus        40 ~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l-~l~~~~~L~~L~l~~c~~~  118 (430)
                      +|+|+++.+.....+.++++|++|++++|.++.  ++..++.+++|+.|+++++. ++.+ .+.++++|++|+++++.  
T Consensus         2 ~L~Ls~n~l~~l~~l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~-i~~l~~~~~l~~L~~L~l~~N~--   76 (124)
T d1dcea3           2 VLHLAHKDLTVLCHLEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNA-LENVDGVANLPRLQELLLCNNR--   76 (124)
T ss_dssp             EEECTTSCCSSCCCGGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSC-CCCCGGGTTCSSCCEEECCSSC--
T ss_pred             EEEcCCCCCCCCcccccCCCCCEEECCCCccCc--chhhhhhhhccccccccccc-ccccCccccccccCeEECCCCc--
Confidence            455555554443344555555555555555532  12234455555555555542 1211 23445566666665543  


Q ss_pred             ceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh--HHHHHHhcCCCcccee
Q 014120          119 LERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD--KWLYNQISELPFLEYL  179 (430)
Q Consensus       119 l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~--~~l~~l~~~~p~Le~L  179 (430)
                      +.                 ..+....+..+++|+.|++++|.+++  .....+...+|+|+.|
T Consensus        77 i~-----------------~~~~~~~l~~~~~L~~L~l~~N~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          77 LQ-----------------QSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CC-----------------SSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEE
T ss_pred             cC-----------------CCCCchhhcCCCCCCEEECCCCcCCcCccHHHHHHHHCcCcceE
Confidence            00                 11111345667888888888888754  1123355556766654

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=4.4e-09  Score=94.11  Aligned_cols=186  Identities=15%  Similarity=0.079  Sum_probs=118.6

Q ss_pred             ecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCC
Q 014120           20 VGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLK   97 (430)
Q Consensus        20 ~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~   97 (430)
                      ..+.....+|+.++  +++++|+++++.+..  +..|.++++|++|+|++|.+....-...+.+++.++++.+..+..+.
T Consensus        15 c~~~~l~~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~   92 (242)
T d1xwdc1          15 CQESKVTEIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL   92 (242)
T ss_dssp             EESCSCSSCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCC
T ss_pred             EeCCCCCCcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeecccccccccccccccccccccc
Confidence            33345678887765  589999999987654  35688999999999999976432112246688999999998877765


Q ss_pred             ccc---cCCCCCcCEEEcCCCcCCceEeE--eec---cceeEEEeecCCCC--ceeccCCC-CcCceEEccCCCCChHHH
Q 014120           98 SLQ---LLGLNKLKEIKLDSNRCGLERVY--ING---VNVHSVDIKVYLEP--CEVNVSSC-KNLTHLRLDGLSITDKWL  166 (430)
Q Consensus        98 ~l~---l~~~~~L~~L~l~~c~~~l~~l~--i~~---p~L~~L~l~~~~~~--~~~~~~~l-~~L~~L~L~~~~i~~~~l  166 (430)
                      ...   +.++++|+++++..+.  +....  ...   ..+..+...+....  ....+.++ ..++.|++.++.++.  +
T Consensus        93 ~~~~~~~~~l~~L~~l~l~~~~--l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~--i  168 (242)
T d1xwdc1          93 YINPEAFQNLPNLQYLLISNTG--IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--I  168 (242)
T ss_dssp             EECTTSEECCTTCCEEEEESCC--CCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--E
T ss_pred             ccccccccccccccccccchhh--hcccccccccccccccccccccccccccccccccccccccceeeecccccccc--c
Confidence            543   4567899999998764  22211  112   23333333331221  12334444 367888998888843  3


Q ss_pred             HHHhcCCCccceecccccccccccccc----ccccceEeccccccccccc
Q 014120          167 YNQISELPFLEYLALHYCMKLRSINIS----SPRLKELVFERCEELVEFE  212 (430)
Q Consensus       167 ~~l~~~~p~Le~L~L~~c~~l~~l~~~----~~~L~~L~l~~c~~L~~~~  212 (430)
                      +......+.++.+....+..++.++..    .++|+.|+++++ +++++.
T Consensus       169 ~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N-~l~~l~  217 (242)
T d1xwdc1         169 HNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRT-RIHSLP  217 (242)
T ss_dssp             CTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTS-CCCCCC
T ss_pred             ccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCC-cCCccC
Confidence            333334566666655566667666542    478899999887 566554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=1.7e-09  Score=91.13  Aligned_cols=129  Identities=19%  Similarity=0.059  Sum_probs=81.3

Q ss_pred             cccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc---cCCCCC
Q 014120           31 IVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ---LLGLNK  106 (430)
Q Consensus        31 ~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~---l~~~~~  106 (430)
                      .+.++.+++.|+|+++.+.. +..+..+++|+.|+|++|.++.-  + -++.+++|+.|++++|. ++.+.   ..++++
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l--~-~~~~l~~L~~L~ls~N~-i~~l~~~~~~~l~~   88 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKL--D-GFPLLRRLKTLLVNNNR-ICRIGEGLDQALPD   88 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEE--C-CCCCCSSCCEEECCSSC-CCEECSCHHHHCTT
T ss_pred             hccCcCcCcEEECCCCCCCccCccccccccCCEEECCCCCCCcc--C-CcccCcchhhhhccccc-ccCCCccccccccc
Confidence            44567778888888877654 33446678888888888877431  1 25567777777777764 33221   223566


Q ss_pred             cCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh-HH-HHHHhcCCCccceeccc
Q 014120          107 LKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD-KW-LYNQISELPFLEYLALH  182 (430)
Q Consensus       107 L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~-~~-l~~l~~~~p~Le~L~L~  182 (430)
                      |++|++++|.  +.                 ..+....+..+++|++|++++|.+++ .. -+..+..+|+|+.|+-.
T Consensus        89 L~~L~L~~N~--i~-----------------~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD~~  147 (162)
T d1a9na_          89 LTELILTNNS--LV-----------------ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ  147 (162)
T ss_dssp             CCEEECCSCC--CC-----------------CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTE
T ss_pred             cccceecccc--cc-----------------ccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeCCC
Confidence            6666666654  10                 01111345678899999999998854 22 23467778888888754

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.72  E-value=3.7e-09  Score=98.56  Aligned_cols=194  Identities=15%  Similarity=0.150  Sum_probs=127.2

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEE
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYI   88 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L   88 (430)
                      ...++|+|.-.+.-...+|+.+.++++|++|+|+++.+..  +..+..+++|+.+++++|.+... ++..+.+++.|+.+
T Consensus        76 ~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~-~p~~l~~l~~L~~l  154 (313)
T d1ogqa_          76 PYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT-LPPSISSLPNLVGI  154 (313)
T ss_dssp             TTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESC-CCGGGGGCTTCCEE
T ss_pred             ccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccccccccccccc-CchhhccCccccee
Confidence            4667777754322334799999999999999999987654  45678899999999999876332 24457889999999


Q ss_pred             EeeeCCCCCcc--ccCCCCC-cCEEEcCCCc---------CCce--Ee--------------EeeccceeEEEeecCCCC
Q 014120           89 NINNCPGLKSL--QLLGLNK-LKEIKLDSNR---------CGLE--RV--------------YINGVNVHSVDIKVYLEP  140 (430)
Q Consensus        89 ~L~~c~~l~~l--~l~~~~~-L~~L~l~~c~---------~~l~--~l--------------~i~~p~L~~L~l~~~~~~  140 (430)
                      +++++..-..+  .+..+.+ ++.+.+..+.         ..+.  .+              ....++++.+.+.+....
T Consensus       155 ~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         155 TFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             eccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99987531111  1112222 2344433322         0000  00              112467888887773222


Q ss_pred             -ceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccccccccccc--ccccceEeccccc
Q 014120          141 -CEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCMKLRSINIS--SPRLKELVFERCE  206 (430)
Q Consensus       141 -~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~~~--~~~L~~L~l~~c~  206 (430)
                       ....+..+++|+.|+|++|.+++ .+|..+.++++|+.|++++++--..+|..  ..+|+.+++.++.
T Consensus       235 ~~~~~~~~~~~L~~L~Ls~N~l~g-~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         235 FDLGKVGLSKNLNGLDLRNNRIYG-TLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CBGGGCCCCTTCCEEECCSSCCEE-CCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSS
T ss_pred             ccccccccccccccccCccCeecc-cCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCc
Confidence             22456778999999999999963 46667888999999999987644455542  3456666666653

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.66  E-value=1.9e-10  Score=100.48  Aligned_cols=146  Identities=19%  Similarity=0.170  Sum_probs=86.1

Q ss_pred             eEEEEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeC
Q 014120           14 KELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNC   93 (430)
Q Consensus        14 ~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c   93 (430)
                      +++++....+....+|.++..+++|++|+|+++.+.....+.++++|++|+|++|.++.  ++.+...++.|+.|++++|
T Consensus        26 ~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i~~l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N  103 (198)
T d1m9la_          26 EKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYN  103 (198)
T ss_dssp             SCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCCCCHHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEE
T ss_pred             ceeeeecccCchhhhhhHHhcccccceeECcccCCCCcccccCCccccChhhccccccc--ccccccccccccccccccc
Confidence            34444333334666777777888899999988776553457788889999999888743  1223334457888888776


Q ss_pred             CCCCcc-ccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHH-------
Q 014120           94 PGLKSL-QLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKW-------  165 (430)
Q Consensus        94 ~~l~~l-~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~-------  165 (430)
                      . ++.+ .+.++++|+.|++++|.  +.                 ..+....+.++++|+.|++++|.++...       
T Consensus       104 ~-i~~l~~~~~l~~L~~L~L~~N~--i~-----------------~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~  163 (198)
T d1m9la_         104 Q-IASLSGIEKLVNLRVLYMSNNK--IT-----------------NWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS  163 (198)
T ss_dssp             E-CCCHHHHHHHHHSSEEEESEEE--CC-----------------CHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHH
T ss_pred             c-ccccccccccccccccccccch--hc-----------------cccccccccCCCccceeecCCCccccCcccccchh
Confidence            3 3332 13334555555555443  00                 0010123567778888888877653210       


Q ss_pred             --HHHHhcCCCccceecc
Q 014120          166 --LYNQISELPFLEYLAL  181 (430)
Q Consensus       166 --l~~l~~~~p~Le~L~L  181 (430)
                        -...+..+|+|+.||-
T Consensus       164 ~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         164 EYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             HHHHHHHHHCSSCCEESS
T ss_pred             hHHHHHHHHCCCcCEeCC
Confidence              1123556677777663

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.61  E-value=4.4e-08  Score=84.46  Aligned_cols=122  Identities=18%  Similarity=0.141  Sum_probs=87.7

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC---CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCC
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~---~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      ++.++.....+|..+.  +++++|+|+++.+..   +..|.++++|+.|+|++|.+... ....+..++.|++|+|+++.
T Consensus        13 v~Cs~~~L~~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~-~~~~~~~~~~L~~L~Ls~N~   89 (192)
T d1w8aa_          13 VDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGI-EPNAFEGASHIQELQLGENK   89 (192)
T ss_dssp             EECTTSCCSSCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSCC
T ss_pred             EEEeCCCcCccCCCCC--CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccc-cccccccccccceeeecccc
Confidence            4555667788898764  689999999987642   36678899999999999987432 13456788999999999874


Q ss_pred             C--CCccccCCCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCC
Q 014120           95 G--LKSLQLLGLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSIT  162 (430)
Q Consensus        95 ~--l~~l~l~~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~  162 (430)
                      .  +..-.+.++++|++|+++++.  +..                 ++ +..|.++++|++|+|++|.+.
T Consensus        90 l~~l~~~~F~~l~~L~~L~L~~N~--l~~-----------------i~-~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          90 IKEISNKMFLGLHQLKTLNLYDNQ--ISC-----------------VM-PGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CCEECSSSSTTCTTCCEEECCSSC--CCE-----------------EC-TTSSTTCTTCCEEECTTCCBC
T ss_pred             ccccCHHHHhCCCcccccccCCcc--ccc-----------------cC-HHHhcCCcccccccccccccc
Confidence            2  222235667888888888764  111                 11 245677889999999988764

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.48  E-value=1.1e-07  Score=84.56  Aligned_cols=187  Identities=11%  Similarity=0.031  Sum_probs=109.3

Q ss_pred             CCceEEEEEecCCccccCCcc-ccCCCCccEEEEcCccCCC---CCCCCCCCCCCEEEEeee-cCChHHHHHHhcCCCCc
Q 014120           11 SNVKELKLDVGCCRIYNLPQI-VFYLKSIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFV-HVDDEVIRDMVAGCPLI   85 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~-l~~~~~L~~L~Ls~~~~~~---~~~~~~l~~L~~L~Ls~~-~~~~~~l~~l~~~~p~L   85 (430)
                      .++++|++.  ++....+|.. +.++++|++|+++++....   +..+.++++++++.+..+ .+.... ...+.++++|
T Consensus        29 ~~l~~L~Ls--~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~-~~~~~~l~~L  105 (242)
T d1xwdc1          29 RNAIELRFV--LTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNL  105 (242)
T ss_dssp             SCCSEEEEE--SCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEEC-TTSEECCTTC
T ss_pred             CCCCEEECc--CCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccc-cccccccccc
Confidence            467766654  4567888876 4569999999999986543   356788999999998764 443221 2356789999


Q ss_pred             cEEEeeeCCCCCccccCCCCCcCEEE---cCCCcCCceEeEee-----ccceeEEEeecCCCC-ceeccCCCCcCceE-E
Q 014120           86 EYININNCPGLKSLQLLGLNKLKEIK---LDSNRCGLERVYIN-----GVNVHSVDIKVYLEP-CEVNVSSCKNLTHL-R  155 (430)
Q Consensus        86 e~L~L~~c~~l~~l~l~~~~~L~~L~---l~~c~~~l~~l~i~-----~p~L~~L~l~~~~~~-~~~~~~~l~~L~~L-~  155 (430)
                      +.++++++..-.......+..++.+.   ..+.  .+..+...     ...++.+.+.+.... .........+++.+ .
T Consensus       106 ~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~--~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~  183 (242)
T d1xwdc1         106 QYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI--NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNL  183 (242)
T ss_dssp             CEEEEESCCCCSCCCCTTTCBSSCEEEEEESCT--TCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEEC
T ss_pred             cccccchhhhccccccccccccccccccccccc--ccccccccccccccccceeeecccccccccccccccchhhhcccc
Confidence            99999997432221222233444443   2221  33333211     236677777663222 11122233444444 4


Q ss_pred             ccCCCCChHHHH-HHhcCCCccceecccccccccccccc-ccccceEecccc
Q 014120          156 LDGLSITDKWLY-NQISELPFLEYLALHYCMKLRSINIS-SPRLKELVFERC  205 (430)
Q Consensus       156 L~~~~i~~~~l~-~l~~~~p~Le~L~L~~c~~l~~l~~~-~~~L~~L~l~~c  205 (430)
                      +.++.++  .++ ..+.++++|+.|++++++ ++.++.. ..++..|..-+.
T Consensus       184 l~~n~l~--~l~~~~f~~l~~L~~L~Ls~N~-l~~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         184 SDNNNLE--ELPNDVFHGASGPVILDISRTR-IHSLPSYGLENLKKLRARST  232 (242)
T ss_dssp             TTCTTCC--CCCTTTTTTSCCCSEEECTTSC-CCCCCSSSCTTCCEEESSSE
T ss_pred             ccccccc--cccHHHhcCCCCCCEEECCCCc-CCccCHHHHcCCcccccCcC
Confidence            5667773  333 246788999999997654 5555442 344444443333

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=8.8e-08  Score=80.28  Aligned_cols=99  Identities=17%  Similarity=0.135  Sum_probs=76.3

Q ss_pred             EEEecCCccccCCccccCCCCccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC-
Q 014120           17 KLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG-   95 (430)
Q Consensus        17 ~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~-   95 (430)
                      +|+++++.+..+|..+..+++|++|+|+++.+..-..+..+++|++|++++|.++.-. ..++..+|+|+.|++++|.- 
T Consensus        22 ~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~~l~~~~~l~~L~~L~ls~N~i~~l~-~~~~~~l~~L~~L~L~~N~i~  100 (162)
T d1a9na_          22 ELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNRICRIG-EGLDQALPDLTELILTNNSLV  100 (162)
T ss_dssp             EEECTTSCCCSCCCGGGGTTCCSEEECCSSCCCEECCCCCCSSCCEEECCSSCCCEEC-SCHHHHCTTCCEEECCSCCCC
T ss_pred             EEECCCCCCCccCccccccccCCEEECCCCCCCccCCcccCcchhhhhcccccccCCC-ccccccccccccceecccccc
Confidence            4667777888898666668999999999998765346889999999999999985421 23456789999999999852 


Q ss_pred             -CCcc-ccCCCCCcCEEEcCCCc
Q 014120           96 -LKSL-QLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        96 -l~~l-~l~~~~~L~~L~l~~c~  116 (430)
                       +..+ .+.++++|+++++++|.
T Consensus       101 ~~~~l~~l~~l~~L~~L~l~~N~  123 (162)
T d1a9na_         101 ELGDLDPLASLKSLTYLCILRNP  123 (162)
T ss_dssp             CGGGGGGGGGCTTCCEEECCSSG
T ss_pred             ccccccccccccccchhhcCCCc
Confidence             3332 35567889999888875

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.43  E-value=9.1e-07  Score=82.40  Aligned_cols=76  Identities=17%  Similarity=0.242  Sum_probs=46.4

Q ss_pred             CCceEEEEEecCCccccCCccccCCCCccEEEEcCccCCC-CCCC----------------CCC-CCCCEEEEeeecCCh
Q 014120           11 SNVKELKLDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRST----------------VTL-FSLRKLCLSFVHVDD   72 (430)
Q Consensus        11 ~~v~~L~L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~----------------~~l-~~L~~L~Ls~~~~~~   72 (430)
                      .+.++|+  ++.+....+|+.   .++|++|+|+++.+.. |..+                ..+ ++|++|++++|.+..
T Consensus        38 ~~l~~Ld--Ls~~~L~~lp~~---~~~L~~L~Ls~N~l~~lp~~~~~L~~L~l~~n~l~~l~~lp~~L~~L~L~~n~l~~  112 (353)
T d1jl5a_          38 RQAHELE--LNNLGLSSLPEL---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK  112 (353)
T ss_dssp             HTCSEEE--CTTSCCSCCCSC---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS
T ss_pred             cCCCEEE--eCCCCCCCCCCC---CCCCCEEECCCCCCcccccchhhhhhhhhhhcccchhhhhcccccccccccccccc
Confidence            3555554  444556677754   3677888887765443 2211                122 357777777776643


Q ss_pred             HHHHHHhcCCCCccEEEeeeCC
Q 014120           73 EVIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        73 ~~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      -  +. .+.+++|+.|+++++.
T Consensus       113 l--p~-~~~l~~L~~L~l~~~~  131 (353)
T d1jl5a_         113 L--PE-LQNSSFLKIIDVDNNS  131 (353)
T ss_dssp             C--CC-CTTCTTCCEEECCSSC
T ss_pred             c--cc-hhhhccceeecccccc
Confidence            1  22 4578999999998875

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.42  E-value=3.4e-07  Score=86.08  Aligned_cols=76  Identities=9%  Similarity=-0.087  Sum_probs=42.2

Q ss_pred             HHHHHHhhCCCCceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeE
Q 014120          256 KFIKLLARFNLCSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSI  332 (430)
Q Consensus       256 ~l~~~l~~l~~l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i  332 (430)
                      .+...+....+++.|++..|.........-...+.....+.|++|.+..+. .....+..+...+-..+|+|+.|.+
T Consensus       234 ~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~l  309 (344)
T d2ca6a1         234 ALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLEL  309 (344)
T ss_dssp             HHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEEC
T ss_pred             cccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCc-CChHHHHHHHHHHHccCCCCCEEEC
Confidence            345556666677777766654332111110001112234678888887764 4444454555555457999999988

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.33  E-value=1.4e-07  Score=81.18  Aligned_cols=125  Identities=15%  Similarity=0.123  Sum_probs=84.6

Q ss_pred             ccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCC--CccccCCCCCcCEEEcCC
Q 014120           38 IYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGL--KSLQLLGLNKLKEIKLDS  114 (430)
Q Consensus        38 L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l--~~l~l~~~~~L~~L~l~~  114 (430)
                      .+.++.++..+.. |..+  .+++++|+|++|.++.......+.++++|+.|+|+++...  ..-.+.+.++|++|++++
T Consensus        10 ~~~v~Cs~~~L~~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~   87 (192)
T d1w8aa_          10 GTTVDCTGRGLKEIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TTEEECTTSCCSSCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEEeCCCcCccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecc
Confidence            4567777766544 4333  3689999999998854222345678899999999887542  222344567888888877


Q ss_pred             CcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccc
Q 014120          115 NRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM  185 (430)
Q Consensus       115 c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~  185 (430)
                      +.  +..                 ++ +..|.++++|++|+|++|.++. ..+..+.++++|++|++++.+
T Consensus        88 N~--l~~-----------------l~-~~~F~~l~~L~~L~L~~N~l~~-i~~~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_          88 NK--IKE-----------------IS-NKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             CC--CCE-----------------EC-SSSSTTCTTCCEEECCSSCCCE-ECTTSSTTCTTCCEEECTTCC
T ss_pred             cc--ccc-----------------cC-HHHHhCCCcccccccCCccccc-cCHHHhcCCcccccccccccc
Confidence            64  111                 11 2457889999999999999843 113356678888888887543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=2.7e-07  Score=89.18  Aligned_cols=292  Identities=17%  Similarity=0.141  Sum_probs=141.9

Q ss_pred             CCCccEEEEcCccCCC------CCCCCCCCCCCEEEEeeecCChHHHHHHhcC----CCCccEEEeeeCCCCCcc-----
Q 014120           35 LKSIYVLDFEFCKLEP------PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAG----CPLIEYININNCPGLKSL-----   99 (430)
Q Consensus        35 ~~~L~~L~Ls~~~~~~------~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~----~p~Le~L~L~~c~~l~~l-----   99 (430)
                      ++++++|+|++|.+..      ...+..+++|++|+|++|.+++.++..+...    .+.|++|++++|. ++..     
T Consensus        26 l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-it~~~~~~l  104 (460)
T d1z7xw1          26 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC-LTGAGCGVL  104 (460)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSC-CBGGGHHHH
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcCCCCCCEEECCCCC-ccccccccc
Confidence            5666777777775442      1223566777777777777766555544432    3457777777664 3321     


Q ss_pred             --ccCCCCCcCEEEcCCCcC-----------------CceEeEe------------------eccceeEEEeecCCCC-c
Q 014120          100 --QLLGLNKLKEIKLDSNRC-----------------GLERVYI------------------NGVNVHSVDIKVYLEP-C  141 (430)
Q Consensus       100 --~l~~~~~L~~L~l~~c~~-----------------~l~~l~i------------------~~p~L~~L~l~~~~~~-~  141 (430)
                        .+..+++|++|++++|.-                 .......                  ..+.++.+.+++.... .
T Consensus       105 ~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ls~~~~~~~  184 (460)
T d1z7xw1         105 SSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA  184 (460)
T ss_dssp             HHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred             cchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhhhcccccccccccccccccccccccccc
Confidence              234456777777765530                 0000000                  0134454544441111 0


Q ss_pred             e-----ecc-CCCCcCceEEccCCCCChHH---HHHHhcCCCccceeccccccccc--------cccccccccceEeccc
Q 014120          142 E-----VNV-SSCKNLTHLRLDGLSITDKW---LYNQISELPFLEYLALHYCMKLR--------SINISSPRLKELVFER  204 (430)
Q Consensus       142 ~-----~~~-~~l~~L~~L~L~~~~i~~~~---l~~l~~~~p~Le~L~L~~c~~l~--------~l~~~~~~L~~L~l~~  204 (430)
                      .     ..+ ..-.....+.+..+.+....   ....+...+.++.+.+.++....        ........++.+++++
T Consensus       185 ~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~  264 (460)
T d1z7xw1         185 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWE  264 (460)
T ss_dssp             HHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred             cccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhccccccccccccccccc
Confidence            0     000 11123455666666554322   22334456667777776543211        1111245677777776


Q ss_pred             ccccccc--------cccCCCcceEEeccee-e-----EE----eccccccceeEEEeeecCCchHHHHHHHHHHhhCCC
Q 014120          205 CEELVEF--------ELDTPNLSIFKCFNYV-E-----SF----SSNALALSQTLLCFISHPVDNEWYLKFIKLLARFNL  266 (430)
Q Consensus       205 c~~L~~~--------~i~~p~L~~~~~~~~~-~-----~~----~~~~~sL~~v~l~~~~~~~~~~~~~~l~~~l~~l~~  266 (430)
                      | .+...        -...+.+..+...+.. .     .+    ......+..+.+...  .-.......+.+++....+
T Consensus       265 n-~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~--~l~~~~~~~l~~~~~~~~~  341 (460)
T d1z7xw1         265 C-GITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC--SFTAACCSHFSSVLAQNRF  341 (460)
T ss_dssp             S-CCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS--CCBGGGHHHHHHHHHHCSS
T ss_pred             c-cccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc--chhhhhhhhcccccccccc
Confidence            6 22211        0134555555554432 0     00    011123344433111  1111222356777788889


Q ss_pred             CceEeeeEeeccceecCcccccccCCCCCCcceEEEEEEeccchhhHHHHHHHHHhcCCCCceeeEe
Q 014120          267 CSNVLNLQCNHEAVLIPRELREILCPPLTYHKHVSFSVLSEILEVSLANLVDCLLWITPHAETLSIE  333 (430)
Q Consensus       267 l~~L~L~~~~~~~~~i~~~l~~~~~p~~~~L~~L~l~~~~~~~~~~~~~i~~~LL~~cP~Le~L~i~  333 (430)
                      ++.|+|..+......+. .+..........|++|.+..+. ...... ..+...++.||+|++|.+.
T Consensus       342 L~~L~Ls~N~i~~~g~~-~l~~~l~~~~~~L~~L~Ls~n~-i~~~~~-~~l~~~l~~~~~L~~L~Ls  405 (460)
T d1z7xw1         342 LLELQISNNRLEDAGVR-ELCQGLGQPGSVLRVLWLADCD-VSDSSC-SSLAATLLANHSLRELDLS  405 (460)
T ss_dssp             CCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEECTTSC-CCHHHH-HHHHHHHHHCCCCCEEECC
T ss_pred             hhhhheeeecccCcccc-hhhhhhhcccCCCCEEECCCCC-CChHHH-HHHHHHHhcCCCCCEEECC
Confidence            99888876654321111 1111111123578999998764 333222 3345667899999999984

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.29  E-value=1.8e-07  Score=74.65  Aligned_cols=95  Identities=20%  Similarity=0.168  Sum_probs=76.0

Q ss_pred             EEecCCccccCCccccCCCCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC-
Q 014120           18 LDVGCCRIYNLPQIVFYLKSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG-   95 (430)
Q Consensus        18 L~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~-   95 (430)
                      |+++++....+| .+..+++|++|+++++.+.. |..+..+++|++|++++|.++.-  + -+..+|+|+.|+++++.. 
T Consensus         3 L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~~lp~~~~~l~~L~~L~l~~N~i~~l--~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3           3 LHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV--D-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             EECTTSCCSSCC-CGGGGTTCCEEECCSSCCCCCCGGGGGCTTCCEEECCSSCCCCC--G-GGTTCSSCCEEECCSSCCC
T ss_pred             EEcCCCCCCCCc-ccccCCCCCEEECCCCccCcchhhhhhhhccccccccccccccc--C-ccccccccCeEECCCCccC
Confidence            567777788887 57889999999999988765 55688999999999999998542  2 377899999999999753 


Q ss_pred             -CCcc-ccCCCCCcCEEEcCCCc
Q 014120           96 -LKSL-QLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        96 -l~~l-~l~~~~~L~~L~l~~c~  116 (430)
                       +..+ .+..+++|+.++++++.
T Consensus        79 ~~~~~~~l~~~~~L~~L~l~~N~  101 (124)
T d1dcea3          79 QSAAIQPLVSCPRLVLLNLQGNS  101 (124)
T ss_dssp             SSSTTGGGGGCTTCCEEECTTSG
T ss_pred             CCCCchhhcCCCCCCEEECCCCc
Confidence             3332 35678999999999865

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=98.29  E-value=2.4e-07  Score=87.14  Aligned_cols=39  Identities=15%  Similarity=0.092  Sum_probs=20.9

Q ss_pred             CCCCCCEEEEeeecCChH---HHHHHhcCCCCccEEEeeeCC
Q 014120           56 TLFSLRKLCLSFVHVDDE---VIRDMVAGCPLIEYININNCP   94 (430)
Q Consensus        56 ~l~~L~~L~Ls~~~~~~~---~l~~l~~~~p~Le~L~L~~c~   94 (430)
                      .+++|+.|+|++|.+++.   .+...+..+++|++|++++|.
T Consensus        91 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~  132 (344)
T d2ca6a1          91 KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG  132 (344)
T ss_dssp             TCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSC
T ss_pred             hCCCcccccccccccccccccchhhhhcccccchheeccccc
Confidence            455666666666655332   233334455666666666553

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.05  E-value=1.1e-07  Score=82.51  Aligned_cols=124  Identities=18%  Similarity=0.165  Sum_probs=73.2

Q ss_pred             CCccEEEEcCcc--CCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccc-c-CCCCCcCEE
Q 014120           36 KSIYVLDFEFCK--LEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQ-L-LGLNKLKEI  110 (430)
Q Consensus        36 ~~L~~L~Ls~~~--~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~-l-~~~~~L~~L  110 (430)
                      ..++.+++++..  +.. +..+..+++|++|+|++|.+++-  + -+.++++|+.|++++|. ++.+. + ..+++|+.|
T Consensus        23 ~~~~~~~l~~~~~~i~~l~~sl~~L~~L~~L~Ls~n~I~~i--~-~l~~l~~L~~L~Ls~N~-i~~i~~~~~~~~~L~~L   98 (198)
T d1m9la_          23 TEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKI--S-SLSGMENLRILSLGRNL-IKKIENLDAVADTLEEL   98 (198)
T ss_dssp             TTCSCEECCBCCTTCCCCHHHHHHTTTCCEEECSEEEESCC--C-CHHHHTTCCEEECCEEE-ECSCSSHHHHHHHCCEE
T ss_pred             cccceeeeecccCchhhhhhHHhcccccceeECcccCCCCc--c-cccCCccccChhhcccc-ccccccccccccccccc
Confidence            345556665521  211 23456788888888888887431  1 14567788888888763 22221 1 112345555


Q ss_pred             EcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHHhcCCCccceecccccc
Q 014120          111 KLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQISELPFLEYLALHYCM  185 (430)
Q Consensus       111 ~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l~~~~p~Le~L~L~~c~  185 (430)
                      ++++|.                      +.....+..+++|+.|++++|.+++-.-...+.++|+|+.|++++++
T Consensus        99 ~l~~N~----------------------i~~l~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~  151 (198)
T d1m9la_          99 WISYNQ----------------------IASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNP  151 (198)
T ss_dssp             ECSEEE----------------------CCCHHHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSH
T ss_pred             cccccc----------------------ccccccccccccccccccccchhccccccccccCCCccceeecCCCc
Confidence            554432                      11112356678899999999988542222346788999999988654

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.03  E-value=7.3e-05  Score=68.91  Aligned_cols=89  Identities=18%  Similarity=0.187  Sum_probs=58.9

Q ss_pred             CCccEEEEcCccCCC-CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCCCCccccCCC-CCcCEEEcC
Q 014120           36 KSIYVLDFEFCKLEP-PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPGLKSLQLLGL-NKLKEIKLD  113 (430)
Q Consensus        36 ~~L~~L~Ls~~~~~~-~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l~l~~~-~~L~~L~l~  113 (430)
                      .++++|+|+++.+.. |   ...++|++|+|++|.++.  ++   ....+|+.|+++++. ++.+  ..+ +.|++|+++
T Consensus        38 ~~l~~LdLs~~~L~~lp---~~~~~L~~L~Ls~N~l~~--lp---~~~~~L~~L~l~~n~-l~~l--~~lp~~L~~L~L~  106 (353)
T d1jl5a_          38 RQAHELELNNLGLSSLP---ELPPHLESLVASCNSLTE--LP---ELPQSLKSLLVDNNN-LKAL--SDLPPLLEYLGVS  106 (353)
T ss_dssp             HTCSEEECTTSCCSCCC---SCCTTCSEEECCSSCCSS--CC---CCCTTCCEEECCSSC-CSCC--CSCCTTCCEEECC
T ss_pred             cCCCEEEeCCCCCCCCC---CCCCCCCEEECCCCCCcc--cc---cchhhhhhhhhhhcc-cchh--hhhcccccccccc
Confidence            478999999987654 4   236899999999998853  22   234689999988864 2222  122 568888888


Q ss_pred             CCc-CCceEeEeeccceeEEEeec
Q 014120          114 SNR-CGLERVYINGVNVHSVDIKV  136 (430)
Q Consensus       114 ~c~-~~l~~l~i~~p~L~~L~l~~  136 (430)
                      +|. ..++.. ...++|+.+++++
T Consensus       107 ~n~l~~lp~~-~~l~~L~~L~l~~  129 (353)
T d1jl5a_         107 NNQLEKLPEL-QNSSFLKIIDVDN  129 (353)
T ss_dssp             SSCCSSCCCC-TTCTTCCEEECCS
T ss_pred             ccccccccch-hhhccceeecccc
Confidence            765 222221 2356777777765

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.8e-05  Score=63.99  Aligned_cols=95  Identities=19%  Similarity=0.068  Sum_probs=62.1

Q ss_pred             EecCCccccCCccccCCCCccEEEEcCcc-CCC--CCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC
Q 014120           19 DVGCCRIYNLPQIVFYLKSIYVLDFEFCK-LEP--PRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG   95 (430)
Q Consensus        19 ~~~~~~~~~LP~~l~~~~~L~~L~Ls~~~-~~~--~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~   95 (430)
                      +.........|..+...++|++|+++++. +..  +..|.++++|+.|+|++|.++.-. +..+.++++|++|+|+++. 
T Consensus        14 ~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~-~~~f~~l~~L~~L~Ls~N~-   91 (156)
T d2ifga3          14 RCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVA-PDAFHFTPRLSRLNLSFNA-   91 (156)
T ss_dssp             ECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEEC-TTGGGSCSCCCEEECCSSC-
T ss_pred             EecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcc-cccccccccccceeccCCC-
Confidence            34444566777777788889999987653 432  356788999999999998874321 3356788888888888864 


Q ss_pred             CCccccC--CCCCcCEEEcCCC
Q 014120           96 LKSLQLL--GLNKLKEIKLDSN  115 (430)
Q Consensus        96 l~~l~l~--~~~~L~~L~l~~c  115 (430)
                      ++.+.-.  ...+|++|+++++
T Consensus        92 l~~l~~~~~~~~~l~~L~L~~N  113 (156)
T d2ifga3          92 LESLSWKTVQGLSLQELVLSGN  113 (156)
T ss_dssp             CSCCCSTTTCSCCCCEEECCSS
T ss_pred             CcccChhhhccccccccccCCC
Confidence            3332211  1234556666544

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=2.2e-05  Score=75.19  Aligned_cols=116  Identities=16%  Similarity=0.113  Sum_probs=72.1

Q ss_pred             CccEEEEcCccCCC---CCCCCCCCCCCEEEEeeecCChHHHH---HHhcCCCCccEEEeeeCCCCCc-----c--ccC-
Q 014120           37 SIYVLDFEFCKLEP---PRSTVTLFSLRKLCLSFVHVDDEVIR---DMVAGCPLIEYININNCPGLKS-----L--QLL-  102 (430)
Q Consensus        37 ~L~~L~Ls~~~~~~---~~~~~~l~~L~~L~Ls~~~~~~~~l~---~l~~~~p~Le~L~L~~c~~l~~-----l--~l~-  102 (430)
                      +|+.|++++..+..   ...+..++++|+|+|++|.+++.++.   ..+..+|+|++|+|++|. ++.     +  .+. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~-i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCS
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCc-CChHHHHHHHHHHhc
Confidence            57888888876654   12345678888888888888775544   345688888888888764 321     1  011 


Q ss_pred             CCCCcCEEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCChHHHHHH
Q 014120          103 GLNKLKEIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITDKWLYNQ  169 (430)
Q Consensus       103 ~~~~L~~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~~~l~~l  169 (430)
                      ...+|++|++++|.  +.+..              .......+..+++|++|++++|.+.+..+..+
T Consensus        82 ~~~~L~~L~L~~n~--it~~~--------------~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l  132 (460)
T d1z7xw1          82 PSCKIQKLSLQNCC--LTGAG--------------CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLL  132 (460)
T ss_dssp             TTCCCCEEECTTSC--CBGGG--------------HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHH
T ss_pred             CCCCCCEEECCCCC--ccccc--------------cccccchhhccccccccccccccchhhhhhhh
Confidence            12467777777664  11000              00011245778899999999999876544443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=0.00014  Score=59.58  Aligned_cols=105  Identities=15%  Similarity=0.052  Sum_probs=65.5

Q ss_pred             CCCCccEEEEcCccCC-CCCCCCCCCCCCEEEEeeec-CChHHHHHHhcCCCCccEEEeeeCCCCCcc---ccCCCCCcC
Q 014120           34 YLKSIYVLDFEFCKLE-PPRSTVTLFSLRKLCLSFVH-VDDEVIRDMVAGCPLIEYININNCPGLKSL---QLLGLNKLK  108 (430)
Q Consensus        34 ~~~~L~~L~Ls~~~~~-~~~~~~~l~~L~~L~Ls~~~-~~~~~l~~l~~~~p~Le~L~L~~c~~l~~l---~l~~~~~L~  108 (430)
                      .|.....++.++.... .|..+.++++|++|+++++. ++.-. ...+.++++|+.|+++++. ++.+   .+.++++|+
T Consensus         6 ~c~~~~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f~~l~~L~   83 (156)
T d2ifga3           6 CPHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKSG-LRFVAPDAFHFTPRLS   83 (156)
T ss_dssp             CCSSSSCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSSC-CCEECTTGGGSCSCCC
T ss_pred             CcCCCCeEEecCCCCccCcccccCccccCeeecCCCccccccC-chhhccccccCcceeeccc-cCCccccccccccccc
Confidence            4555667777775543 36677888999999997664 53211 2246778888888888864 3333   345567777


Q ss_pred             EEEcCCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCC
Q 014120          109 EIKLDSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSI  161 (430)
Q Consensus       109 ~L~l~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i  161 (430)
                      +|+++++.  +..                 ++ ...+.. .+|+.|+|++|.+
T Consensus        84 ~L~Ls~N~--l~~-----------------l~-~~~~~~-~~l~~L~L~~Np~  115 (156)
T d2ifga3          84 RLNLSFNA--LES-----------------LS-WKTVQG-LSLQELVLSGNPL  115 (156)
T ss_dssp             EEECCSSC--CSC-----------------CC-STTTCS-CCCCEEECCSSCC
T ss_pred             ceeccCCC--Ccc-----------------cC-hhhhcc-ccccccccCCCcc
Confidence            77777654  111                 11 112222 3588888888876

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.88  E-value=0.00014  Score=60.01  Aligned_cols=120  Identities=23%  Similarity=0.235  Sum_probs=67.2

Q ss_pred             CccEEEEcCccCCCCCCCCCCCCCCEEEEeeecCChHHHHHHhcCCCCccEEEeeeCCC--CCccc--cCCCCCcCEEEc
Q 014120           37 SIYVLDFEFCKLEPPRSTVTLFSLRKLCLSFVHVDDEVIRDMVAGCPLIEYININNCPG--LKSLQ--LLGLNKLKEIKL  112 (430)
Q Consensus        37 ~L~~L~Ls~~~~~~~~~~~~l~~L~~L~Ls~~~~~~~~l~~l~~~~p~Le~L~L~~c~~--l~~l~--l~~~~~L~~L~l  112 (430)
                      ..+.|+++++....  .+..+..+..++...+.  ...+..+...+|+|++|+|++|.-  +..+.  +..+++|+.|++
T Consensus        23 ~~~~Ldls~l~~~~--~l~~~~~~~~l~~~~~~--~~~l~~~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~L   98 (162)
T d1koha1          23 SQQALDLKGLRSDP--DLVAQNIDVVLNRRSSM--AATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNL   98 (162)
T ss_dssp             SSCCBCCCCCSSCT--TTTTTTCCCCTTSHHHH--HHHHHHHHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCC
T ss_pred             hhCeeecccCCCCc--hhhhccchhhcchhhhH--hhhhHHHHHhCCCCCEeeCCCccccCCchhHHHHhhCCccccccc
Confidence            34556666654332  23333444444443332  233455566899999999999752  22211  224577777777


Q ss_pred             CCCcCCceEeEeeccceeEEEeecCCCCceeccCCCCcCceEEccCCCCCh------HHHHHHhcCCCccceec
Q 014120          113 DSNRCGLERVYINGVNVHSVDIKVYLEPCEVNVSSCKNLTHLRLDGLSITD------KWLYNQISELPFLEYLA  180 (430)
Q Consensus       113 ~~c~~~l~~l~i~~p~L~~L~l~~~~~~~~~~~~~l~~L~~L~L~~~~i~~------~~l~~l~~~~p~Le~L~  180 (430)
                      +++.  +.+                 .+ ...+.+..+|+.|++.+|.++.      ......+..+|.|+.||
T Consensus        99 s~N~--i~~-----------------l~-~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1          99 SGNE--LKS-----------------ER-ELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAIRERFPKLLRLD  152 (162)
T ss_dssp             TTSC--CCC-----------------GG-GHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHHHTTSTTCCEET
T ss_pred             ccCc--ccc-----------------ch-hhhhhhccccceeecCCCCcCcCcccchhHHHHHHHHCCCCCEEC
Confidence            7654  110                 11 1122233468888898887753      23445677888888887

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.63  E-value=0.0015  Score=53.83  Aligned_cols=37  Identities=22%  Similarity=0.315  Sum_probs=18.9

Q ss_pred             CCCCCEEEEeee-cCChHHHHHH---hcCCCCccEEEeeeC
Q 014120           57 LFSLRKLCLSFV-HVDDEVIRDM---VAGCPLIEYININNC   93 (430)
Q Consensus        57 l~~L~~L~Ls~~-~~~~~~l~~l---~~~~p~Le~L~L~~c   93 (430)
                      .++|++|+|+++ .++++++..+   +...+.|++|+|++|
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n   54 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT   54 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc
Confidence            456666666653 3555443333   334455555555554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.17  E-value=0.0034  Score=51.32  Aligned_cols=39  Identities=21%  Similarity=0.342  Sum_probs=23.9

Q ss_pred             cCCCCcCceEEcc--CCCCChHH---HHHHhcCCCccceecccc
Q 014120          145 VSSCKNLTHLRLD--GLSITDKW---LYNQISELPFLEYLALHY  183 (430)
Q Consensus       145 ~~~l~~L~~L~L~--~~~i~~~~---l~~l~~~~p~Le~L~L~~  183 (430)
                      +...++|+.++|.  ++.+.+..   +...+..++.|+.|++..
T Consensus        98 l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~  141 (166)
T d1io0a_          98 LQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHF  141 (166)
T ss_dssp             GGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCC
T ss_pred             HHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcC
Confidence            3455677765554  55676633   444556777888887753

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.00071  Score=55.50  Aligned_cols=61  Identities=23%  Similarity=0.247  Sum_probs=28.6

Q ss_pred             CCCCCCEEEEeeecCCh-HHHHHHhcCCCCccEEEeeeCCC--CCccccCCCCCcCEEEcCCCc
Q 014120           56 TLFSLRKLCLSFVHVDD-EVIRDMVAGCPLIEYININNCPG--LKSLQLLGLNKLKEIKLDSNR  116 (430)
Q Consensus        56 ~l~~L~~L~Ls~~~~~~-~~l~~l~~~~p~Le~L~L~~c~~--l~~l~l~~~~~L~~L~l~~c~  116 (430)
                      .+++|++|+|++|.++. ..+...+..|++|+.|+++++..  +..+...+..+|+.+++.++.
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Np  126 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNS  126 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTST
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCC
Confidence            45556666666665532 12233344556666666665432  222221223345555555543

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=94.50  E-value=0.0042  Score=50.89  Aligned_cols=81  Identities=16%  Similarity=0.244  Sum_probs=51.3

Q ss_pred             CCCccEEEEcCcc-CCCC------CCCCCCCCCCEEEEeeecCChHHH---HHHhcCCCCccEEEeeeCCCCCc-----c
Q 014120           35 LKSIYVLDFEFCK-LEPP------RSTVTLFSLRKLCLSFVHVDDEVI---RDMVAGCPLIEYININNCPGLKS-----L   99 (430)
Q Consensus        35 ~~~L~~L~Ls~~~-~~~~------~~~~~l~~L~~L~Ls~~~~~~~~l---~~l~~~~p~Le~L~L~~c~~l~~-----l   99 (430)
                      .++|+.|+|+++. +...      ..+...++|++|+|++|.+++.+.   ...+...+.|++|+|++|. +..     +
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~-i~~~g~~~l   92 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNF-LTPELLARL   92 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSB-CCHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhh-cchHHHHHH
Confidence            5678888887753 3221      234566778888888887765443   3345567788888888874 221     1


Q ss_pred             --ccCCCCCcCEEEcCCCc
Q 014120          100 --QLLGLNKLKEIKLDSNR  116 (430)
Q Consensus       100 --~l~~~~~L~~L~l~~c~  116 (430)
                        .+...+.|++|+++++.
T Consensus        93 ~~aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCS
T ss_pred             HHHHHhCCcCCEEECCCCc
Confidence              23445778888887653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=94.30  E-value=0.032  Score=45.11  Aligned_cols=37  Identities=14%  Similarity=0.116  Sum_probs=23.8

Q ss_pred             CCCCcCceEEccCCCCChHHHHH---HhcCCCccceeccc
Q 014120          146 SSCKNLTHLRLDGLSITDKWLYN---QISELPFLEYLALH  182 (430)
Q Consensus       146 ~~l~~L~~L~L~~~~i~~~~l~~---l~~~~p~Le~L~L~  182 (430)
                      ...+.++.+++.++.++++.+..   .+...+.|+.++|.
T Consensus        71 ~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          71 KVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECC
T ss_pred             hhcccchhhhhccccccchhHHHHHHHHHhCccccEEeec
Confidence            34567788888888887755543   34556667766664