Citrus Sinensis ID: 014127

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
MVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVLNDSKRGSSSTSEDGSDSNSDSSSSESESEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAEARSGAVFSLENINNTASL
ccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccccc
cEEEccccccccHHEEEEccccccccHHHHccHHHcHcHHHHHHHHHHccccHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccccc
mvsvpgkvdafsdvkigmndvdgrlpsnirgnhksnagIRASvlndskrgssstsedgsdsnsdsssseseSEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELsqrnsnthqTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMtrkeiedpTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLdenkpvtgsssrdlefgawdlsqsnlrpLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHsqssaearsgavfsleninntasl
mvsvpgkvdafsdvkigmndvdgrlpsnirgnhksnagirasvlndskrgssstsedgsdsnsdsssseseserereERRKLKEKILAEKaaakagdaikerENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAheelsqrnsnthqtgiyLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEgniemtrkeiedptevEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVsrlldenkpvtgsssrdlefgawdlsqsnLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAEArsgavfsleninntasl
MVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVLNdskrgssstsedgsdsnsdsssseseserereerrklkekilaekaaakagdaikerENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETanadlaralaaaQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAEARSGAVFSLENINNTASL
******************************************************************************************************************************************************************L******************************************************TGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDK************************LKRRLGQLTDHLIQK***********ATLAFRIEAVSRL***************EFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLS*************************
****************************************************************************************************************************************************************************************************************************************************************************************************************************************************************************KQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSH*****************IN*****
MVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVL************************************KLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHS********GAVFSLENINNTASL
MVSVPGKVDAFSDVKIGMNDVDGRLPSN*RG************************************************RKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTG*****************LRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQS*****SGAVFS***IN*****
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MVSVPGKVDAFSDVKIGMNDVDGRLPSNIRGNHKSNAGIRASVLNDSKRGSSSTSEDGSDSNSDxxxxxxxxxxxxxxxxxxxxxxxxxxxxAKAGDAxxxxxxxxxxxxxxxxxxxxxxxxxxxxQVKEASELQTSMMETMDAFELExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxNSNTHQTGIYLKRLAASKGVEFExxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAEARSGAVFSLENINNTASL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query430 2.2.26 [Sep-21-2011]
B0F9L7668 Golgin candidate 2 OS=Ara yes no 0.797 0.513 0.657 1e-125
Q6GNT7722 Golgin subfamily A member N/A no 0.634 0.378 0.279 2e-15
Q9QYE6729 Golgin subfamily A member yes no 0.723 0.426 0.259 1e-14
Q3ZU82728 Golgin subfamily A member yes no 0.423 0.25 0.298 1e-14
Q7SXE4760 Golgin subfamily A member yes no 0.806 0.456 0.255 1e-14
Q8TBA6731 Golgin subfamily A member yes no 0.713 0.419 0.267 9e-14
Q8S8N9707 Golgin candidate 1 OS=Ara no no 0.739 0.449 0.272 3e-13
Q5JLY8709 Golgin-84 OS=Oryza sativa no no 0.574 0.348 0.269 1e-11
Q8SZ63516 Golgin-84 OS=Drosophila m yes no 0.276 0.230 0.291 1e-07
P152151639 Laminin subunit gamma-1 O no no 0.525 0.137 0.245 0.0002
>sp|B0F9L7|GOGC2_ARATH Golgin candidate 2 OS=Arabidopsis thaliana GN=GC2 PE=1 SV=1 Back     alignment and function desciption
 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 228/347 (65%), Positives = 279/347 (80%), Gaps = 4/347 (1%)

Query: 86  ILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAF 145
           + AEK A KA   IKERENMVARLEGEK SLEKI+EERAKQQ +EA+ELQT+MMET++A 
Sbjct: 320 VFAEKVATKAVAVIKERENMVARLEGEKLSLEKIVEERAKQQAQEAAELQTNMMETLEAA 379

Query: 146 ELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQTELKEVAH 205
           +LEKQ+HNNTRME L  LA LE  NA+L R+LAA QKKLE + +QVA L+QQ ELKE   
Sbjct: 380 DLEKQKHNNTRMEVLTRLAGLEAENAELTRSLAAGQKKLETQIDQVAVLKQQVELKESTL 439

Query: 206 EELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEM 265
           EEL +   N    G  LK+L  S+G +FE ++LEAE + + DKI +L+DKA KLE +IEM
Sbjct: 440 EELKRNTFNIGGRGTTLKQLDTSRGDKFEHQMLEAEISLLTDKIGRLQDKATKLEADIEM 499

Query: 266 TRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPV 325
            RKE+E+PTEVEIELKRRL QLTDHLIQKQ+QVEALSSEKAT+ FRIEAVSRL++ENK +
Sbjct: 500 MRKELEEPTEVEIELKRRLNQLTDHLIQKQSQVEALSSEKATILFRIEAVSRLIEENKGM 559

Query: 326 --TGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPI 383
             T +SS+DLE G W+LS S  +P F++KIRSGKKH+G L+ QL++IF++G VFLRRNP 
Sbjct: 560 SATEASSQDLEAGDWELSGSKFKPAFQDKIRSGKKHLGWLVMQLNAIFISGTVFLRRNPT 619

Query: 384 AKLWSLVYLVCLHLWVIYILLSHSQ--SSAEARSGAVFSLENINNTA 428
           AK+W++VYLVCLHLWV+YILLSHS   SS E RSGAV SLEN +N++
Sbjct: 620 AKIWAVVYLVCLHLWVLYILLSHSDASSSGELRSGAVISLENFSNSS 666
Golgi matrix protein playing a role in tethering of vesicles to Golgi membranes and in maintaining the overall structure of the Golgi apparatus.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6GNT7|GOGA5_XENLA Golgin subfamily A member 5 OS=Xenopus laevis GN=golga5 PE=2 SV=1 Back     alignment and function description
>sp|Q9QYE6|GOGA5_MOUSE Golgin subfamily A member 5 OS=Mus musculus GN=Golga5 PE=1 SV=2 Back     alignment and function description
>sp|Q3ZU82|GOGA5_RAT Golgin subfamily A member 5 OS=Rattus norvegicus GN=Golga5 PE=1 SV=1 Back     alignment and function description
>sp|Q7SXE4|GOGA5_DANRE Golgin subfamily A member 5 OS=Danio rerio GN=golga5 PE=2 SV=1 Back     alignment and function description
>sp|Q8TBA6|GOGA5_HUMAN Golgin subfamily A member 5 OS=Homo sapiens GN=GOLGA5 PE=1 SV=3 Back     alignment and function description
>sp|Q8S8N9|GOGC1_ARATH Golgin candidate 1 OS=Arabidopsis thaliana GN=GC1 PE=2 SV=2 Back     alignment and function description
>sp|Q5JLY8|GOGA5_ORYSJ Golgin-84 OS=Oryza sativa subsp. japonica GN=Os01g0744400 PE=2 SV=1 Back     alignment and function description
>sp|Q8SZ63|GOGA5_DROME Golgin-84 OS=Drosophila melanogaster GN=Golgin84 PE=1 SV=2 Back     alignment and function description
>sp|P15215|LAMC1_DROME Laminin subunit gamma-1 OS=Drosophila melanogaster GN=LanB2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
224135521 567 predicted protein [Populus trichocarpa] 0.809 0.613 0.733 1e-145
255583467 691 Golgin-84, putative [Ricinus communis] g 0.925 0.575 0.693 1e-144
357521611 667 Golgin candidate [Medicago truncatula] g 0.986 0.635 0.629 1e-134
356527890 689 PREDICTED: golgin candidate 2-like [Glyc 0.967 0.603 0.636 1e-133
225456134 682 PREDICTED: golgin candidate 2-like [Viti 0.962 0.607 0.658 1e-132
356511261 689 PREDICTED: golgin candidate 2-like [Glyc 0.765 0.477 0.679 1e-124
30685736 668 golgin candidate 2 [Arabidopsis thaliana 0.797 0.513 0.657 1e-123
449497585 662 PREDICTED: golgin candidate 2-like [Cucu 0.767 0.498 0.65 1e-119
9719733 654 EST gb|AI997943 comes from this gene [Ar 0.753 0.495 0.630 1e-116
449439557 716 PREDICTED: golgin candidate 2-like [Cucu 0.765 0.459 0.614 1e-114
>gi|224135521|ref|XP_002322094.1| predicted protein [Populus trichocarpa] gi|222869090|gb|EEF06221.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  522 bits (1344), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 273/372 (73%), Positives = 307/372 (82%), Gaps = 24/372 (6%)

Query: 78  ERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQVKEASELQTS 137
           ERRK   KILAE+AAAKA  AI ERENMVARLEGEKQSLEKILEERAKQQV+EASELQT+
Sbjct: 201 ERRK---KILAERAAAKAVQAIIERENMVARLEGEKQSLEKILEERAKQQVQEASELQTT 257

Query: 138 MMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMETNQVAELRQQ 197
            METM+A +LEKQ+HNNTRME L  LAKLET NADLAR+LA AQK LE+E NQVAELRQQ
Sbjct: 258 TMETMEAVDLEKQKHNNTRMEVLSRLAKLETTNADLARSLATAQKNLELEINQVAELRQQ 317

Query: 198 TELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDK-- 255
            ELKEVA E+L +R S THQT  YL + AASKGV+FEREILE EY F+ DKI +LEDK  
Sbjct: 318 FELKEVALEDLRRRISKTHQTETYLNQAAASKGVQFEREILETEYLFLIDKIQRLEDKLI 377

Query: 256 -----------------AKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQV 298
                            AKKLE +IEMTRKE+EDPTEVEIELKRRLGQLTDHLIQKQAQV
Sbjct: 378 HSHARLLTCISFTCLFQAKKLETDIEMTRKEMEDPTEVEIELKRRLGQLTDHLIQKQAQV 437

Query: 299 EALSSEKATLAFRIEAVSRLLDENKPVTGSSSRDLEFGAWDLSQSNLRPLFEEKIRSGKK 358
           EALSSEKAT+AFRIEAVSRLL+ENK V  SS  +LE G W +S S LRP+FE+KIR+G+K
Sbjct: 438 EALSSEKATIAFRIEAVSRLLEENKSVVNSS--NLESGKWAISDSKLRPMFEDKIRAGRK 495

Query: 359 HIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVIYILLSHSQSSAEARSGAV 418
           H+GSL++QLD+IFLAGVVFLRRNP AKLW LVYL+CLH+WVIYIL++ SQSS E RSGAV
Sbjct: 496 HLGSLVQQLDAIFLAGVVFLRRNPTAKLWCLVYLLCLHVWVIYILMAPSQSSNEGRSGAV 555

Query: 419 FSLENINNTASL 430
           FSLEN+N TA +
Sbjct: 556 FSLENLNKTAGV 567

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255583467|ref|XP_002532492.1| Golgin-84, putative [Ricinus communis] gi|223527791|gb|EEF29891.1| Golgin-84, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357521611|ref|XP_003631094.1| Golgin candidate [Medicago truncatula] gi|355525116|gb|AET05570.1| Golgin candidate [Medicago truncatula] Back     alignment and taxonomy information
>gi|356527890|ref|XP_003532539.1| PREDICTED: golgin candidate 2-like [Glycine max] Back     alignment and taxonomy information
>gi|225456134|ref|XP_002278278.1| PREDICTED: golgin candidate 2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511261|ref|XP_003524345.1| PREDICTED: golgin candidate 2-like [Glycine max] Back     alignment and taxonomy information
>gi|30685736|ref|NP_173257.2| golgin candidate 2 [Arabidopsis thaliana] gi|205779900|sp|B0F9L7.1|GOGC2_ARATH RecName: Full=Golgin candidate 2; Short=AtGC2 gi|164708706|gb|ABY67250.1| putative golgin-84-like protein [Arabidopsis thaliana] gi|332191564|gb|AEE29685.1| golgin candidate 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449497585|ref|XP_004160442.1| PREDICTED: golgin candidate 2-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|9719733|gb|AAF97835.1|AC034107_18 EST gb|AI997943 comes from this gene [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449439557|ref|XP_004137552.1| PREDICTED: golgin candidate 2-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query430
TAIR|locus:2194075668 GC2 "AT1G18190" [Arabidopsis t 0.758 0.488 0.639 6.7e-104
UNIPROTKB|E1C947735 GOLGA5 "Uncharacterized protei 0.665 0.389 0.270 1.2e-19
RGD|1308163728 Golga5 "golgin A5" [Rattus nor 0.672 0.396 0.266 4.3e-19
UNIPROTKB|A5D7A5732 GOLGA5 "GOLGA5 protein" [Bos t 0.641 0.377 0.275 4.4e-19
UNIPROTKB|Q8TBA6731 GOLGA5 "Golgin subfamily A mem 0.641 0.377 0.269 8.2e-19
UNIPROTKB|F1SD67729 GOLGA5 "Uncharacterized protei 0.641 0.378 0.269 1.1e-18
UNIPROTKB|Q6GNT7722 golga5 "Golgin subfamily A mem 0.641 0.382 0.269 2e-18
MGI|MGI:1351475729 Golga5 "golgi autoantigen, gol 0.672 0.396 0.257 2e-18
UNIPROTKB|E2QWJ2731 GOLGA5 "Uncharacterized protei 0.641 0.377 0.266 6.5e-18
ZFIN|ZDB-GENE-040426-2749760 golga5 "golgi autoantigen, gol 0.646 0.365 0.275 6.7e-17
TAIR|locus:2194075 GC2 "AT1G18190" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1029 (367.3 bits), Expect = 6.7e-104, P = 6.7e-104
 Identities = 211/330 (63%), Positives = 259/330 (78%)

Query:   103 ENMVARLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQL 162
             ENMVARLEGEK SLEKI+EERAKQQ +EA+ELQT+MMET++A +LEKQ+HNNTRME L  
Sbjct:   337 ENMVARLEGEKLSLEKIVEERAKQQAQEAAELQTNMMETLEAADLEKQKHNNTRMEVLTR 396

Query:   163 LAKLETXXXXXXXXXXXXQKKLEMETNQVAELRQQTELKEVAHEELSQRNSNTHQTGIYL 222
             LA LE             QKKLE + +QVA L+QQ ELKE   EEL +   N    G  L
Sbjct:   397 LAGLEAENAELTRSLAAGQKKLETQIDQVAVLKQQVELKESTLEELKRNTFNIGGRGTTL 456

Query:   223 KRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKR 282
             K+L  S+G +FE ++LEAE + + DKI +L+DKA KLE +IEM RKE+E+PTEVEIELKR
Sbjct:   457 KQLDTSRGDKFEHQMLEAEISLLTDKIGRLQDKATKLEADIEMMRKELEEPTEVEIELKR 516

Query:   283 RLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDENKPV--TGSSSRDLEFGAWDL 340
             RL QLTDHLIQKQ+QVEALSSEKAT+ FRIEAVSRL++ENK +  T +SS+DLE G W+L
Sbjct:   517 RLNQLTDHLIQKQSQVEALSSEKATILFRIEAVSRLIEENKGMSATEASSQDLEAGDWEL 576

Query:   341 SQSNLRPLFEEKIRSGKKHIGSLLKQLDSIFLAGVVFLRRNPIAKLWSLVYLVCLHLWVI 400
             S S  +P F++KIRSGKKH+G L+ QL++IF++G VFLRRNP AK+W++VYLVCLHLWV+
Sbjct:   577 SGSKFKPAFQDKIRSGKKHLGWLVMQLNAIFISGTVFLRRNPTAKIWAVVYLVCLHLWVL 636

Query:   401 YILLSHSQ--SSAEARSGAVFSLENINNTA 428
             YILLSHS   SS E RSGAV SLEN +N++
Sbjct:   637 YILLSHSDASSSGELRSGAVISLENFSNSS 666
GO:0003674 "molecular_function" evidence=ND
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0008150 "biological_process" evidence=ND
GO:0009630 "gravitropism" evidence=RCA
UNIPROTKB|E1C947 GOLGA5 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
RGD|1308163 Golga5 "golgin A5" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|A5D7A5 GOLGA5 "GOLGA5 protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q8TBA6 GOLGA5 "Golgin subfamily A member 5" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F1SD67 GOLGA5 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q6GNT7 golga5 "Golgin subfamily A member 5" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
MGI|MGI:1351475 Golga5 "golgi autoantigen, golgin subfamily a, 5" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2QWJ2 GOLGA5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-2749 golga5 "golgi autoantigen, golgin subfamily a, 5" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 9e-07
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 1e-06
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 6e-06
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 7e-06
TIGR021681179 TIGR02168, SMC_prok_B, chromosome segregation prot 1e-05
TIGR02169 1164 TIGR02169, SMC_prok_A, chromosome segregation prot 2e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 7e-05
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 9e-05
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 2e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 3e-04
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 4e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 4e-04
PTZ00121 2084 PTZ00121, PTZ00121, MAEBL; Provisional 7e-04
TIGR02168 1179 TIGR02168, SMC_prok_B, chromosome segregation prot 0.001
COG1196 1163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.002
COG4942420 COG4942, COG4942, Membrane-bound metallopeptidase 0.002
COG0419908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.002
COG11961163 COG1196, Smc, Chromosome segregation ATPases [Cell 0.004
COG0419 908 COG0419, SbcC, ATPase involved in DNA repair [DNA 0.004
pfam09787509 pfam09787, Golgin_A5, Golgin subfamily A member 5 0.004
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information 
 Score = 50.9 bits (122), Expect = 9e-07
 Identities = 51/289 (17%), Positives = 110/289 (38%), Gaps = 21/289 (7%)

Query: 48  KRGSSSTSEDGSDSNSDSSSSESESEREREERRKLKEKILAEKAAAKAGDAIKERENMVA 107
             GS +       S+        E E E  E     EK+  E  + K  + ++  E+++ 
Sbjct: 648 PSGSITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLK--NELRSLEDLLE 705

Query: 108 RLEGEKQSLEKILEERAKQQVKEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLE 167
            L   +    +   E  K+++    E    +   ++  E E +       E  + L +LE
Sbjct: 706 ELR-RQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELE 764

Query: 168 TAN-------ADLARALAAAQKKLEMETNQVAELRQQ-TELKEVAHEELSQRNSNTHQTG 219
                     A L   +   ++K +    ++ EL ++  E +        +  S   +  
Sbjct: 765 EELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRE 824

Query: 220 IYLKRLAASKGVEFEREILEAEYTFIADKIIQLEDKAKKLEGNIEMTRKE-------IED 272
              + +     +E E E LE +   + +++ +LE + ++L+  +E    E       +++
Sbjct: 825 RLEQEIEE---LEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKE 881

Query: 273 PTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATLAFRIEAVSRLLDE 321
             E + EL+  L +L   L + + ++E L      L  ++E +   L E
Sbjct: 882 LEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPE 930

Length = 1163
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional Back     alignment and domain information
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] Back     alignment and domain information
>gnl|CDD|220402 pfam09787, Golgin_A5, Golgin subfamily A member 5 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 430
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 99.95
KOG4677554 consensus Golgi integral membrane protein [Intrace 99.94
PF08172248 CASP_C: CASP C terminal; InterPro: IPR012955 This 99.59
KOG0963629 consensus Transcription factor/CCAAT displacement 98.66
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.73
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.67
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 97.61
TIGR02168 1179 SMC_prok_B chromosome segregation protein SMC, com 97.61
TIGR02169 1164 SMC_prok_A chromosome segregation protein SMC, pri 97.48
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.26
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 97.1
KOG0161 1930 consensus Myosin class II heavy chain [Cytoskeleto 97.09
KOG1029 1118 consensus Endocytic adaptor protein intersectin [S 96.9
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 96.88
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 96.87
PRK02224 880 chromosome segregation protein; Provisional 96.67
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 96.65
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 96.64
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 96.34
KOG1937521 consensus Uncharacterized conserved protein [Funct 96.32
PRK02224880 chromosome segregation protein; Provisional 96.01
PRK11637428 AmiB activator; Provisional 95.85
PRK04863 1486 mukB cell division protein MukB; Provisional 95.65
COG1196 1163 Smc Chromosome segregation ATPases [Cell division 95.62
TIGR02680 1353 conserved hypothetical protein TIGR02680. Members 95.03
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.99
PF13851201 GAS: Growth-arrest specific micro-tubule binding 94.84
KOG0971 1243 consensus Microtubule-associated protein dynactin 94.66
PRK10929 1109 putative mechanosensitive channel protein; Provisi 94.63
PRK09039343 hypothetical protein; Validated 94.44
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 94.38
PF07888546 CALCOCO1: Calcium binding and coiled-coil domain ( 94.23
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 94.21
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 93.92
PRK09039343 hypothetical protein; Validated 93.86
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 93.81
KOG0996 1293 consensus Structural maintenance of chromosome pro 93.55
PF10168717 Nup88: Nuclear pore component; InterPro: IPR019321 93.43
PF14915305 CCDC144C: CCDC144C protein coiled-coil region 93.35
PF00038312 Filament: Intermediate filament protein; InterPro: 93.19
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 92.97
KOG0250 1074 consensus DNA repair protein RAD18 (SMC family pro 92.72
TIGR01843423 type_I_hlyD type I secretion membrane fusion prote 92.59
TIGR00606 1311 rad50 rad50. This family is based on the phylogeno 92.58
KOG4643 1195 consensus Uncharacterized coiled-coil protein [Fun 92.56
KOG0612 1317 consensus Rho-associated, coiled-coil containing p 91.98
PF10174 775 Cast: RIM-binding protein of the cytomatrix active 91.8
KOG09941758 consensus Extracellular matrix glycoprotein Lamini 91.09
KOG0996 1293 consensus Structural maintenance of chromosome pro 91.08
KOG0980 980 consensus Actin-binding protein SLA2/Huntingtin-in 90.69
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 90.32
PF10212518 TTKRSYEDQ: Predicted coiled-coil domain-containing 90.03
PF00261237 Tropomyosin: Tropomyosin; InterPro: IPR000533 Trop 90.02
PF09726697 Macoilin: Transmembrane protein; InterPro: IPR0191 89.93
COG1579239 Zn-ribbon protein, possibly nucleic acid-binding [ 89.8
KOG0977 546 consensus Nuclear envelope protein lamin, intermed 88.75
PF04111314 APG6: Autophagy protein Apg6; InterPro: IPR007243 88.33
PF07926132 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: 88.29
PF09787511 Golgin_A5: Golgin subfamily A member 5; InterPro: 88.28
PF12718143 Tropomyosin_1: Tropomyosin like; InterPro: IPR0005 87.92
PF05667594 DUF812: Protein of unknown function (DUF812); Inte 87.71
PF15619194 Lebercilin: Ciliary protein causing Leber congenit 87.68
COG4942420 Membrane-bound metallopeptidase [Cell division and 87.56
KOG0964 1200 consensus Structural maintenance of chromosome pro 87.48
PRK11281 1113 hypothetical protein; Provisional 87.43
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 87.19
PRK10884206 SH3 domain-containing protein; Provisional 86.96
KOG0971 1243 consensus Microtubule-associated protein dynactin 86.9
KOG1003205 consensus Actin filament-coating protein tropomyos 86.82
PF15035182 Rootletin: Ciliary rootlet component, centrosome c 86.56
PF07106169 TBPIP: Tat binding protein 1(TBP-1)-interacting pr 85.75
PRK03918 880 chromosome segregation protein; Provisional 84.69
PF04012221 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 T 84.57
TIGR03007498 pepcterm_ChnLen polysaccharide chain length determ 83.97
PRK04863 1486 mukB cell division protein MukB; Provisional 83.71
PF15070 617 GOLGA2L5: Putative golgin subfamily A member 2-lik 83.6
PRK11637428 AmiB activator; Provisional 83.49
PF11559151 ADIP: Afadin- and alpha -actinin-Binding; InterPro 83.08
PF00769246 ERM: Ezrin/radixin/moesin family; InterPro: IPR011 82.97
PF14992280 TMCO5: TMCO5 family 82.82
PF05701522 WEMBL: Weak chloroplast movement under blue light; 81.95
PF06120301 Phage_HK97_TLTM: Tail length tape measure protein; 81.39
PF09730 717 BicD: Microtubule-associated protein Bicaudal-D; I 80.81
PF05701522 WEMBL: Weak chloroplast movement under blue light; 80.69
PF08614194 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR 80.59
PF09789319 DUF2353: Uncharacterized coiled-coil protein (DUF2 80.4
KOG4460741 consensus Nuclear pore complex, Nup88/rNup84 compo 80.28
PF05622713 HOOK: HOOK protein; InterPro: IPR008636 This famil 80.13
PF09755310 DUF2046: Uncharacterized conserved protein H4 (DUF 80.05
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information 
Probab=99.95  E-value=1.9e-26  Score=241.85  Aligned_cols=163  Identities=29%  Similarity=0.413  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Q 014127          232 EFEREILEAEYTFIADKII----QLEDKAKKLEGNIEMTRKEIEDP--TEVEIELKRRLGQLTDHLIQKQAQVEALSSEK  305 (430)
Q Consensus       232 EaE~e~l~qE~~~l~~el~----~lq~klk~lE~EIq~Lr~~ls~p--S~~e~ELE~RL~~LTe~LIqKQtqLEsLssEk  305 (430)
                      |.|.+++.+|+.++.+++.    .++.++...+.||++|+.+++..  +....|+|+||++||++||+||++||.|.+||
T Consensus       336 e~e~~l~~~el~~~~ee~~~~~s~~~~k~~~ke~E~q~lr~~l~~~~~~s~~~elE~rl~~lt~~Li~KQ~~lE~l~~ek  415 (511)
T PF09787_consen  336 EAELRLYYQELYHYREELSRQKSPLQLKLKEKESEIQKLRNQLSARASSSSWNELESRLTQLTESLIQKQTQLESLGSEK  415 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhccCCcHhHHHHHhhccHHHHHHHHHHHHHHhhh
Confidence            7888899999999998885    56667777899999999998663  34678999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhcCCC---CCCCCCC--cccCcccCCCCCcCcchhh--hhhcccchhhhhhhhHHHHHHHHHHHH
Q 014127          306 ATLAFRIEAVSRLLDENKPV---TGSSSRD--LEFGAWDLSQSNLRPLFEE--KIRSGKKHIGSLLKQLDSIFLAGVVFL  378 (430)
Q Consensus       306 ~AL~lqLERle~~~~e~~~~---s~~s~~d--~e~~~~~~~~s~lrP~f~~--~~a~~~r~~k~al~~lD~~~lrl~rfL  378 (430)
                      ++|.+||||+.+.+++....   +..+...  ..++.    ..++.|++..  ++.++.|+++++++.||+|++++|+||
T Consensus       416 ~al~lqlErl~~~l~~~~~~~~~~~~~~~~~~~~~d~----~~r~~~~~~~~~~d~~~~~r~~~a~~~iD~~~ir~g~fL  491 (511)
T PF09787_consen  416 NALRLQLERLETQLKEEASNNRPSSILMKYSNSEDDA----ESRVPLLMKDSPHDIGVARRVKRAASVIDSFSIRLGIFL  491 (511)
T ss_pred             hhccccHHHHHHHHHhhccCCCCchhhHhhccCCCch----hhhhhhhccCCCccchHHHHHHHHHHHHhHhhHHHHHHH
Confidence            99999999999988852221   1111111  11111    1222222222  223457999999999999999999999


Q ss_pred             hhchhhHHHHHHHHHHHHHH
Q 014127          379 RRNPIAKLWSLVYLVCLHLW  398 (430)
Q Consensus       379 rr~p~aRl~fi~Y~v~LHlw  398 (430)
                      ||||++|+|||+||++||||
T Consensus       492 rr~p~~R~~~i~Y~~~LhlW  511 (511)
T PF09787_consen  492 RRYPMARIFVIIYMALLHLW  511 (511)
T ss_pred             hcCHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999

They stimulate the formation of Golgi stacks and ribbons, and are involved in intra-Golgi retrograde transport. Two main interactions have been characterised: one with RAB1A that has been activated by GTP-binding and another with isoform CASP of CUTL1 [].
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only] Back     alignment and domain information
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins Back     alignment and domain information
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription] Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type Back     alignment and domain information
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton] Back     alignment and domain information
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>KOG1937 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PRK02224 chromosome segregation protein; Provisional Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning] Back     alignment and domain information
>TIGR02680 conserved hypothetical protein TIGR02680 Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF13851 GAS: Growth-arrest specific micro-tubule binding Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>PRK10929 putative mechanosensitive channel protein; Provisional Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT) Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>PRK09039 hypothetical protein; Validated Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs Back     alignment and domain information
>PF14915 CCDC144C: CCDC144C protein coiled-coil region Back     alignment and domain information
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair] Back     alignment and domain information
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family Back     alignment and domain information
>TIGR00606 rad50 rad50 Back     alignment and domain information
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown] Back     alignment and domain information
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms] Back     alignment and domain information
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion [] Back     alignment and domain information
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures] Back     alignment and domain information
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton] Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif Back     alignment and domain information
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes Back     alignment and domain information
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only] Back     alignment and domain information
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure] Back     alignment and domain information
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT) Back     alignment and domain information
>PF09787 Golgin_A5: Golgin subfamily A member 5; InterPro: IPR019177 This entry represents a family of proteins involved in maintaining Golgi structure Back     alignment and domain information
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells Back     alignment and domain information
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function Back     alignment and domain information
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease Back     alignment and domain information
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning] Back     alignment and domain information
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PRK11281 hypothetical protein; Provisional Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PRK10884 SH3 domain-containing protein; Provisional Back     alignment and domain information
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton] Back     alignment and domain information
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton] Back     alignment and domain information
>PF15035 Rootletin: Ciliary rootlet component, centrosome cohesion Back     alignment and domain information
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences Back     alignment and domain information
>PRK03918 chromosome segregation protein; Provisional Back     alignment and domain information
>PF04012 PspA_IM30: PspA/IM30 family; InterPro: IPR007157 This family includes PspA a protein that suppresses sigma54-dependent transcription Back     alignment and domain information
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily Back     alignment and domain information
>PRK04863 mukB cell division protein MukB; Provisional Back     alignment and domain information
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5 Back     alignment and domain information
>PRK11637 AmiB activator; Provisional Back     alignment and domain information
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch Back     alignment and domain information
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin [] Back     alignment and domain information
>PF14992 TMCO5: TMCO5 family Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12) Back     alignment and domain information
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) [] Back     alignment and domain information
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function Back     alignment and domain information
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function Back     alignment and domain information
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>PF05622 HOOK: HOOK protein; InterPro: IPR008636 This family consists of several HOOK1, 2 and 3 proteins from different eukaryotic organisms Back     alignment and domain information
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query430
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 4e-15
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 9e-12
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 3e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 7e-10
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 2e-07
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-10
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 6e-08
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 1e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 4e-06
3lvg_D190 LCB, clathrin light chain B; SELF assembly, coated 1e-04
2zuo_A861 MVP, major vault protein; repeat domains, protein- 1e-04
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
 Score = 76.8 bits (189), Expect = 4e-15
 Identities = 41/253 (16%), Positives = 98/253 (38%), Gaps = 3/253 (1%)

Query: 69   ESESEREREERRKLKEKILAEKAAAKAGDAIKERENMVARLEGEKQSLEKILEERAKQQV 128
            E  +E E    R   +K   E+   +    I+E E    +L+ EK+ +++ + +  ++Q+
Sbjct: 906  ELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKKKMQQQMLD-LEEQL 964

Query: 129  KEASELQTSMMETMDAFELEKQRHNNTRMEALQLLAKLETANADLARALAAAQKKLEMET 188
            +E    +  +       + + ++  +  +       KL      L   ++     L  E 
Sbjct: 965  EEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEE 1024

Query: 189  NQVAELRQQTELKEVAHEELSQRNSNTHQTGIYLKRLAASKGVEFEREILEAEYTFIADK 248
             +   L +     E    EL  R     ++   L++    + +E E   L  +   +  +
Sbjct: 1025 EKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEK--IKRKLEGESSDLHEQIAELQAQ 1082

Query: 249  IIQLEDKAKKLEGNIEMTRKEIEDPTEVEIELKRRLGQLTDHLIQKQAQVEALSSEKATL 308
            I +L+ +  K E  ++     +ED T  +    +++ +L  H+   Q  +E+  + +   
Sbjct: 1083 IAELKAQLAKKEEELQAALARLEDETSQKNNALKKIRELESHISDLQEDLESEKAARNKA 1142

Query: 309  AFRIEAVSRLLDE 321
              +   +S  L+ 
Sbjct: 1143 EKQKRDLSEELEA 1155
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C* Length = 3245 Back     alignment and structure
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190 Back     alignment and structure
>2zuo_A MVP, major vault protein; repeat domains, protein-protein complex, cytoplasm, ribonucleoprotein, structural protein; 3.50A {Rattus norvegicus} PDB: 2zv4_N 2zv5_a 2qzv_A Length = 861 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query430
1i84_S1184 Smooth muscle myosin heavy chain; muscle protein, 97.22
1c1g_A284 Tropomyosin; contractIle protein; 7.00A {Sus scrof 96.59
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 96.58
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 96.37
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 96.17
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 95.94
3na7_A256 HP0958; flagellar biogenesis, flagellum export, C4 94.42
3vkg_A 3245 Dynein heavy chain, cytoplasmic; AAA+ protein, mol 94.23
2b9c_A147 Striated-muscle alpha tropomyosin; alpha-helix, co 93.41
2v66_B111 Nuclear distribution protein NUDE-like 1; structur 92.36
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 91.28
3ol1_A119 Vimentin; structural genomics, PSI-2, protein stru 90.29
2ocy_A154 RAB guanine nucleotide exchange factor SEC2; RAB, 89.83
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 87.13
2v71_A189 Nuclear distribution protein NUDE-like 1; developm 86.08
3swk_A86 Vimentin; cytoskeleton, intermediate filament, alp 85.22
3oja_B597 Anopheles plasmodium-responsive leucine-rich REPE 84.44
2fxo_A129 Myosin heavy chain, cardiac muscle beta isoform; c 84.44
3q8t_A96 Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90 83.7
2dfs_A1080 Myosin-5A; myosin-V, inhibited state, cryoelectron 82.99
4gkw_A167 Spindle assembly abnormal protein 6; double helix, 82.29
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 81.11
3o0z_A168 RHO-associated protein kinase 1; coiled-coil, tran 80.06
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Back     alignment and structure
Probab=97.22  E-value=0.00055  Score=77.75  Aligned_cols=18  Identities=33%  Similarity=0.324  Sum_probs=8.3

Q ss_pred             HHHHHhHHhhHHHHHHHH
Q 014127          103 ENMVARLEGEKQSLEKIL  120 (430)
Q Consensus       103 e~~~arl~~ek~~l~k~l  120 (430)
                      +.-+..|+.++..+..-+
T Consensus       884 e~~l~~Le~e~~~l~~~L  901 (1184)
T 1i84_S          884 EQKHTQLCEEKNLLQEKL  901 (1184)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            333444555555544433
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1 PDB: 2tma_A 2w49_A 2w4u_A Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori} Back     alignment and structure
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* Back     alignment and structure
>2b9c_A Striated-muscle alpha tropomyosin; alpha-helix, coiled coil, alanine, axial stagger, radius, SIDE-chain packing, crystal packing; 2.30A {Rattus norvegicus} SCOP: h.1.5.1 Back     alignment and structure
>2v66_B Nuclear distribution protein NUDE-like 1; structural protein, developmental protein, structural protei phosphorylation, transport, microtubule; 2.10A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1 Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus} Back     alignment and structure
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix, structural; 1.70A {Homo sapiens} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A Back     alignment and structure
>3q8t_A Beclin-1; autophagy, ATG14L uvrag, apoptosis; 1.90A {Rattus norvegicus} Back     alignment and structure
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Back     alignment and structure
>4gkw_A Spindle assembly abnormal protein 6; double helix, SAS-5, centriole, structural protein; 3.30A {Caenorhabditis elegans} Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>3o0z_A RHO-associated protein kinase 1; coiled-coil, transferase; HET: MSE; 2.33A {Homo sapiens} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00