Citrus Sinensis ID: 014129

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430
Protein Sequence
MEIWDTSTEAVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPRKVADSTESELLNTDLKSIGGKSLPDPTRKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVETTGNTKVMPSTSQQTTGLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVVESFPVQNQAASQKLLQKMSTSNQDNRHSRGRRYRGKGKEEEPAVFTLEEWEKRKAGAKPFVNHKLPDTSNDEDLAWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYERDDRVHGTENRGRGRGRGRRKGRGRGRGRG
Secondary Structure (PSIPRED)
cccccccHHHHHHHHHHcccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEcccccHHHHccccccccEEEEEEEcccEEEEEEEcccccccccccccccEEEEEcccEEEEEEEEEccccEEEEccccHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccHHHHHHHHcccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHcHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccccccccccccccEEEEEEEEEEcccccccHHccccccccEEEEEEEcccEEEEEEEEEcccccccccccccEEEEEccEEEEEEEEEEccccEEEEcccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHccccccccccccccccccccccccccccccccccccccccccccHHHHccccccccccccccccccHHHHHccccccHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHcccccccHHHcccccccccHHHHHHHHHHcccHHccccccccccHHHHHHccHcccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MEIWDTSTEAVIKALRSrgwcfgniQEVTAIIAINSaliddkdprkvadsteSELLNTDlksiggkslpdptrkfshiqgpiVLQVASVRDIsrssieefsgnpgsnrLLKLVLTDGHIEITAieyshipsipydvvpgtkvrlenkvpvhsgivclnpnVVTVLGGVVASLHEEWQMNrkysvfsrsslrpsqesggggpppfekfqigapshqlaqrgrfyhddsestaktsepvavettgntkvmpstsqqttgleknnsvtspkvtrveerteedpsssqarpkevvesfpvqNQAASQKLLQKMStsnqdnrhsrgrryrgkgkeeepavfTLEEWEKRKagakpfvnhklpdtsndEDLAWQLQNQldledsheqsgmhdsqaENIRMSMFsyerddrvhgtenrgrgrgrgrrkgrgrgrgrg
Flexible Loop (DISEMBL)
MEIWDTSTEAVIKALRSRGWCFGNIQEVTAIIAINsaliddkdprkVADStesellntdlksiggkslPDPTRKFSHIQGPIVLQVASVRDISRSSieefsgnpgsnrLLKLVLTDGHIEITaieyshipsipYDVVPGTKVRLENKVPVhsgivclnpnvVTVLGGVVASLHEEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKFQIGAPSHQLAQRGRFYHDdsestaktsepvavettgntkvmpstsqqttgleknnsvtspkvtrveerteedpsssqarpkevvESFPVQNQAASQKLLqkmstsnqdnrhsrgrryrgkgkeeepavftleewekrKAGAKPFVNHKLPDTSNDEDLAWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFsyerddrvhgtenrgrgrgrgrrkgrgrgrgrg
Low Complexity Region (SEG)
MEIWDTSTEAVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPRKVADSTESELLNTDLKSIGGKSLPDPTRKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSRSSLRPSQESggggpppFEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVETTGNTKVMPSTSQQTTGLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVVESFPVQNQAASQKLLQKMSTSNQDNRHSrgrryrgkgkeeePAVFTLEEWEKRKAGAKPFVNHKLPDTSNDEDLAWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYERDDRVHGTENrgrgrgrgrrkgrgrgrgrg
Disordered region (IsUnstruct)
***WDTSTEAVIKALRSRGWCFGNIQEVTAIIAINSALID************************************HIQGPIVLQVASVRDI**************NRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSV******************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISOPRED)
*EIW***TEAVIKALRSRGWCFGNIQEVTAII*************KVADSTESELLNTDLKSIGGKSLPDPTRKFSHIQGPIVLQVASVRDISRS*************LLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNR**********************************************************************************************************************************************************************************************************************************************************
Disordered Region (DISEMBL)
MEIWDTSTEAVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPRKVADSTESELLNTDLKSIGGKSLPDPTRKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVF***************PPPFEKFQIGAPS***********************VAVETTGNTKV************************************************************************************EPAVFTLEEWEKRKAGAKPFVNHKLPDTSNDEDLAWQLQNQLDL***********SQAENIRMSMFSYERDD***************************
Disordered Region (DISPRO)
*EIWDTSTEAVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPRKVADSTESELLNTDLKSIGGKSLPDPTRKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSR*****************************************************************************************************************************************************T*****KRKAGAKP***H**PDTSNDEDLAWQLQNQLDLEDS****************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
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TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIWDTSTEAVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPRKVADSTESELLNTDLKSIGGKSLPDPTRKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVETTGNTKVMPSTSQQTTGLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVVESFPVQNQAASQKLLQKMSTSNQDNRHSRGRRYRGKGKEEEPAVFTLEEWEKRKAGAKPFVNHKLPDTSNDEDLAWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYERDDRVHGTENRGRGRGRGRRKGRGRGRGRG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	430	2.2.26 [Sep-21-2011]
Q5ZMS6	741	Tudor domain-containing p	yes	no	0.406	0.236	0.353	3e-23
Q6P1U3	710	Tudor domain-containing p	yes	no	0.337	0.204	0.396	4e-22
Q91W18	743	Tudor domain-containing p	yes	no	0.337	0.195	0.383	6e-22
Q2HJG4	722	Tudor domain-containing p	yes	no	0.304	0.181	0.384	1e-20
Q6NYG6	733	Tudor domain-containing p	yes	no	0.337	0.197	0.357	6e-20
Q9H7E2	651	Tudor domain-containing p	no	no	0.234	0.155	0.415	5e-16
Q6NRP6	650	Tudor domain-containing p	N/A	no	0.218	0.144	0.393	8e-14
Q66HC1	651	Tudor domain-containing p	yes	no	0.218	0.144	0.383	2e-13
Q9H9A7	625	RecQ-mediated genome inst	no	no	0.281	0.193	0.317	1e-09
A4IF98	624	RecQ-mediated genome inst	no	no	0.281	0.193	0.296	5e-09

>sp|Q5ZMS6|TDRD3_CHICK Tudor domain-containing protein 3 OS=Gallus gallus GN=TDRD3 PE=2 SV=1

 Score =  110 bits (274), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 65/184 (35%), Positives = 96/184 (52%), Gaps = 9/184 (4%)

Query: 56  LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
           LNTDL++IG K LP      K   ++GP VLQ+  +R++S     E S    + R+L+L 
Sbjct: 41  LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKIRNVSAPKDNEESQ--AAPRMLRLQ 98

Query: 114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
           +TDGH   TAIEY+ +  I  +  PGTK++L   + V +G + L+ +   VLGG V  L 
Sbjct: 99  MTDGHTSCTAIEYNSMSKISLNTPPGTKIKLSGIIEVRNGFLLLDDSNTAVLGGEVEHLI 158

Query: 174 EEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKFQIGAPSHQLAQRGRFYHDDSESTAKT 233
           E+W++ R  +  SRS++        GGPPPF  F     SH            +     T
Sbjct: 159 EKWELQRSLAKHSRSNI-----GTEGGPPPFLPFGQKCASHMQVDSRELDRRKTLQMTNT 213

Query: 234 SEPV 237
           ++PV
Sbjct: 214 AKPV 217

Scaffolding protein that specifically recognizes and binds dimethylarginine-containing proteins. In nucleus, acts as a coactivator: recognizes and binds asymmetric dimethylation on the core histone tails associated with transcriptional activation (H3R17me2a and H4R3me2a) and recruits proteins at these arginine-methylated loci. In cytoplasm, may play a role in the assembly and/or disassembly of mRNA stress granules and in the regulation of translation of target mRNAs by binding Arg/Gly-rich motifs (GAR) in dimethylarginine-containing proteins.
Gallus gallus (taxid: 9031)

>sp|Q6P1U3|TDRD3_XENTR Tudor domain-containing protein 3 OS=Xenopus tropicalis GN=tdrd3 PE=2 SV=2

 Score =  106 bits (264), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 61/154 (39%), Positives = 86/154 (55%), Gaps = 9/154 (5%)

Query: 56  LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
           LNTDL++ G K LP+     K   + GP VLQ+  +R+IS     E S    + R+L+L 
Sbjct: 6   LNTDLRTTGKKFLPNDINGGKVEKVNGPCVLQIQKIRNISAPKDNEES--QAAPRMLRLQ 63

Query: 114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
           LTDGH   TAIE +++  I  +  PGTK++L   + V +G + L+     VLGG V  L 
Sbjct: 64  LTDGHTSCTAIELNYLSKISLNTPPGTKIKLLGTIEVKNGYLLLDDTNTVVLGGEVEHLI 123

Query: 174 EEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKF 207
           E+W++ R  S  SRS++        GGPPPF  F
Sbjct: 124 EKWELQRSLSKHSRSNIGIE-----GGPPPFVPF 152

Scaffolding protein that specifically recognizes and binds dimethylarginine-containing proteins. In nucleus, acts as a coactivator: recognizes and binds asymmetric dimethylation on the core histone tails associated with transcriptional activation (H3R17me2a and H4R3me2a) and recruits proteins at these arginine-methylated loci. In cytoplasm, may play a role in the assembly and/or disassembly of mRNA stress granules and in the regulation of translation of target mRNAs by binding Arg/Gly-rich motifs (GAR) in dimethylarginine-containing proteins.

Xenopus tropicalis (taxid: 8364)

>sp|Q91W18|TDRD3_MOUSE Tudor domain-containing protein 3 OS=Mus musculus GN=Tdrd3 PE=1 SV=4

 Score =  105 bits (262), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 59/154 (38%), Positives = 88/154 (57%), Gaps = 9/154 (5%)

Query: 56  LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
           LNTDL++IG K LP      K   ++GP VLQ+  VR+++     E S    + R+L++ 
Sbjct: 41  LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKVRNVAAPKDNEESQ--AAPRMLRVQ 98

Query: 114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
           +TDGH   TA+E+S+I  I  +  PGTKV+L   V + +G + L+ +  TVLGG V  L 
Sbjct: 99  MTDGHTSCTAVEFSYISKISLNTPPGTKVKLSGTVDIKNGFLLLSDSNTTVLGGEVEHLI 158

Query: 174 EEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKF 207
           ++W + R     +RS++        GGPPPF  F
Sbjct: 159 DKWALQRSLLKHNRSNI-----GAEGGPPPFLPF 187

Scaffolding protein that specifically recognizes and binds dimethylarginine-containing proteins. In nucleus, acts as a coactivator: recognizes and binds asymmetric dimethylation on the core histone tails associated with transcriptional activation (H3R17me2a and H4R3me2a) and recruits proteins at these arginine-methylated loci. In cytoplasm, may play a role in the assembly and/or disassembly of mRNA stress granules and in the regulation of translation of target mRNAs by binding Arg/Gly-rich motifs (GAR) in dimethylarginine-containing proteins.

Mus musculus (taxid: 10090)

>sp|Q2HJG4|TDRD3_BOVIN Tudor domain-containing protein 3 OS=Bos taurus GN=TDRD3 PE=2 SV=1

 Score =  101 bits (251), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 53/138 (38%), Positives = 81/138 (58%), Gaps = 7/138 (5%)

Query: 77  HIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDV 136
           +++GP VLQ+  +R+++     E S    + R+L+L +TDGHI  TA+E+S++  I  + 
Sbjct: 42  NLEGPCVLQIQKIRNVAAPKDNEESQ--AAPRMLRLQMTDGHISCTAVEFSYLSKISLNT 99

Query: 137 VPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSRSSLRPSQES 196
            PGTKV+L   V + +G + LN +  TVLGG V  L E+W++ R  S  +RS++      
Sbjct: 100 PPGTKVKLSGAVDIKNGFLLLNDSNTTVLGGEVEHLIEKWELQRSLSKHNRSNI-----G 154

Query: 197 GGGGPPPFEKFQIGAPSH 214
             GGPPPF  F     SH
Sbjct: 155 TEGGPPPFVPFGQKCVSH 172

Scaffolding protein that specifically recognizes and binds dimethylarginine-containing proteins. In nucleus, acts as a coactivator: recognizes and binds asymmetric dimethylation on the core histone tails associated with transcriptional activation (H3R17me2a and H4R3me2a) and recruits proteins at these arginine-methylated loci. In cytoplasm, may play a role in the assembly and/or disassembly of mRNA stress granules and in the regulation of translation of target mRNAs by binding Arg/Gly-rich motifs (GAR) in dimethylarginine-containing proteins.

Bos taurus (taxid: 9913)

>sp|Q6NYG6|TDRD3_DANRE Tudor domain-containing protein 3 OS=Danio rerio GN=tdrd3 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 9/154 (5%)

Query: 56  LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
           LN DL+ IG   LP      +   ++GP VLQV  +R+++ S   E S    + R+L++ 
Sbjct: 42  LNNDLRPIGKSFLPADINSGRIEKLEGPCVLQVQKIRNVAASKDHEESQ--AAPRMLRVQ 99

Query: 114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
           +TDGH   T +E+  +  I  +  PGTKV+L   V V +GI+ L+ + + VLGG V  + 
Sbjct: 100 MTDGHTACTGLEFKQLSKISLNTPPGTKVKLLGVVQVKNGILLLDDSKIAVLGGEVDHMI 159

Query: 174 EEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKF 207
           E+W+  R  +  SR ++        GGPPPF  F
Sbjct: 160 EKWEFQRSLAKHSRRNI-----GAEGGPPPFVPF 188

Scaffolding protein that specifically recognizes and binds dimethylarginine-containing proteins. In nucleus, acts as a coactivator: recognizes and binds asymmetric dimethylation on the core histone tails associated with transcriptional activation (H3R17me2a and H4R3me2a) and recruits proteins at these arginine-methylated loci. In cytoplasm, may play a role in the assembly and/or disassembly of mRNA stress granules and in the regulation of translation of target mRNAs by binding Arg/Gly-rich motifs (GAR) in dimethylarginine-containing proteins.

Danio rerio (taxid: 7955)

>sp|Q9H7E2|TDRD3_HUMAN Tudor domain-containing protein 3 OS=Homo sapiens GN=TDRD3 PE=1 SV=1

 Score = 86.3 bits (212), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 63/106 (59%), Gaps = 5/106 (4%)

Query: 109 LLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV 168
           +L+L +TDGHI  TA+E+S++  I  +  PGTKV+L   V + +G + LN +  TVLGG 
Sbjct: 1   MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE 60

Query: 169 VASLHEEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKFQIGAPSH 214
           V  L E+W++ R  S  +RS++        GGPPPF  F     SH
Sbjct: 61  VEHLIEKWELQRSLSKHNRSNI-----GTEGGPPPFVPFGQKCVSH 101

Scaffolding protein that specifically recognizes and binds dimethylarginine-containing proteins. In nucleus, acts as a coactivator: recognizes and binds asymmetric dimethylation on the core histone tails associated with transcriptional activation (H3R17me2a and H4R3me2a) and recruits proteins at these arginine-methylated loci. In cytoplasm, may play a role in the assembly and/or disassembly of mRNA stress granules and in the regulation of translation of target mRNAs by binding Arg/Gly-rich motifs (GAR) in dimethylarginine-containing proteins.

Homo sapiens (taxid: 9606)

>sp|Q6NRP6|TDRD3_XENLA Tudor domain-containing protein 3 OS=Xenopus laevis GN=tdrd3 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 5/99 (5%)

Query: 109 LLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV 168
           +L++ LTDGH   TA+E +H+  I  +  PGTK++L   + V +G + L+     VLGG 
Sbjct: 1   MLRVQLTDGHTSCTAVELNHLSKISLNTPPGTKIKLLGTIEVKNGYLLLDDTNTVVLGGE 60

Query: 169 VASLHEEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKF 207
           V  L E+W++ R  S  SRS++        GGPPPF  F
Sbjct: 61  VEHLIEKWELQRSLSKHSRSNIGIE-----GGPPPFVPF 94

Scaffolding protein that specifically recognizes and binds dimethylarginine-containing proteins. In nucleus, acts as a coactivator: recognizes and binds asymmetric dimethylation on the core histone tails associated with transcriptional activation (H3R17me2a and H4R3me2a) and recruits proteins at these arginine-methylated loci. In cytoplasm, may play a role in the assembly and/or disassembly of mRNA stress granules and in the regulation of translation of target mRNAs by binding Arg/Gly-rich motifs (GAR) in dimethylarginine-containing proteins.

Xenopus laevis (taxid: 8355)

>sp|Q66HC1|TDRD3_RAT Tudor domain-containing protein 3 OS=Rattus norvegicus GN=Tdrd3 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 58/99 (58%), Gaps = 5/99 (5%)

Query: 109 LLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV 168
           +L++ +TDGH   TA+E+S+I  I  +  PGTKV+L   V + +G + L+ +  TVLGG 
Sbjct: 1   MLRVQMTDGHTSCTAVEFSYISKISLNTPPGTKVKLSGTVDIKNGFLLLSDSNTTVLGGE 60

Query: 169 VASLHEEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKF 207
           V  L ++W + R     +RS++        GGPPPF  F
Sbjct: 61  VEHLIDKWALQRSLLKHNRSNI-----GAEGGPPPFLPF 94

Scaffolding protein that specifically recognizes and binds dimethylarginine-containing proteins. In nucleus, acts as a coactivator: recognizes and binds asymmetric dimethylation on the core histone tails associated with transcriptional activation (H3R17me2a and H4R3me2a) and recruits proteins at these arginine-methylated loci. In cytoplasm, may play a role in the assembly and/or disassembly of mRNA stress granules and in the regulation of translation of target mRNAs by binding Arg/Gly-rich motifs (GAR) in dimethylarginine-containing proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q9H9A7|RMI1_HUMAN RecQ-mediated genome instability protein 1 OS=Homo sapiens GN=RMI1 PE=1 SV=3

 Score = 65.1 bits (157), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 24/145 (16%)

Query: 56  LNTDLKSIGGKSLPDPTRKF--SHIQGPIVLQVASVRDISR---SSIEEFSGNPGSN--- 107
           L TDL+ +    LPD   +     + G   LQ+ S+ D+S+   S I++  G   +N   
Sbjct: 57  LLTDLRDLEHPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTNDLV 116

Query: 108 ----------------RLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVH 151
                           R+L L LTDG ++I  +EY  IP +  D+ PGTK+ +   +   
Sbjct: 117 TAEAQVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYGNISFR 176

Query: 152 SGIVCLNPNVVTVLGGVVASLHEEW 176
            G++ L P  V VLGG V +L EE+
Sbjct: 177 LGVLLLKPENVKVLGGEVDALLEEY 201

Essential component of the RMI complex, a complex that plays an important role in the processing of homologous recombination intermediates to limit DNA crossover formation in cells. Promotes TOP3A binding to double Holliday junctions (DHJ) and hence stimulates TOP3A-mediated dissolution. Required for BLM phosphorylation during mitosis. Within the BLM complex, required for BLM and TOP3A stability.

Homo sapiens (taxid: 9606)

>sp|A4IF98|RMI1_BOVIN RecQ-mediated genome instability protein 1 OS=Bos taurus GN=RMI1 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 43/145 (29%), Positives = 71/145 (48%), Gaps = 24/145 (16%)

Query: 56  LNTDLKSIGGKSLPDPTRKF--SHIQGPIVLQVASVRDISR---SSIEEFSGNPGSN--- 107
           L TDL+ +  + LP    +     + G   LQ+ S+ D+S+   + I++  G   +N   
Sbjct: 57  LLTDLRDLEHRLLPSGILETPKGELNGFFALQINSLVDVSQPAYAQIQKLRGKNTTNDLI 116

Query: 108 ----------------RLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVH 151
                           R+L L LTDG ++I  +EY  IP++  D+ PGTK+ +   +   
Sbjct: 117 TAETQVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQSIPALHSDLPPGTKILIYGNISFR 176

Query: 152 SGIVCLNPNVVTVLGGVVASLHEEW 176
            G++ L P  V +LGG V +L EE+
Sbjct: 177 LGVLLLKPENVKMLGGEVDALLEEY 201

Essential component of the RMI complex, a complex that plays an important role in the processing of homologous recombination intermediates to limit DNA crossover formation in cells. Promotes TOP3A binding to double Holliday junctions (DHJ) and hence stimulates TOP3A-mediated dissolution. Required for BLM phosphorylation during mitosis. Within the BLM complex, required for BLM and TOP3A stability.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
225445362	420	PREDICTED: uncharacterized protein LOC10	0.895	0.916	0.600	1e-127
297738885	411	unnamed protein product [Vitis vinifera]	0.888	0.929	0.6	1e-126
356516918	435	PREDICTED: uncharacterized protein LOC10	0.895	0.885	0.527	1e-108
255549010	397	conserved hypothetical protein [Ricinus	0.865	0.937	0.549	1e-108
449464290	413	PREDICTED: tudor domain-containing prote	0.883	0.920	0.536	1e-105
42573433	441	uncharacterized protein [Arabidopsis tha	0.881	0.859	0.472	5e-91
18420083	443	uncharacterized protein [Arabidopsis tha	0.886	0.860	0.472	1e-90
297812183	445	hypothetical protein ARALYDRAFT_488891 [	0.879	0.849	0.473	3e-90
147838988	586	hypothetical protein VITISV_030347 [Viti	0.639	0.469	0.575	4e-86
297596207	424	Os01g0178100 [Oryza sativa Japonica Grou	0.832	0.844	0.450	2e-82

>gi|225445362|ref|XP_002281629.1| PREDICTED: uncharacterized protein LOC100243995 [Vitis vinifera]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 239/398 (60%), Positives = 294/398 (73%), Gaps = 13/398 (3%)

Query: 8   TEAVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPRKVADSTESELLNTDLKSIGGKS 67
           TE +++ L  RGWCFGN++EV A+I INSAL D+       DS ESEL N DL+SIG KS
Sbjct: 7   TEEMLETLTKRGWCFGNVEEVKAVIMINSALHDEG---CTVDSVESELANMDLRSIGAKS 63

Query: 68  LPDPT--RKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIE 125
           LPDP+  RK S++ GP VLQ++SVRDIS+SSI + SGN  S RLL+L LTDG  E+TAIE
Sbjct: 64  LPDPSLLRKSSYLHGPKVLQISSVRDISQSSIADSSGNSSSRRLLRLNLTDGCTEMTAIE 123

Query: 126 YSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVF 185
           YS IP+IP +VVPGTKVRLE K  +H+GI+CLNP V+TVLGGVV SL+EEWQMN+KYS F
Sbjct: 124 YSPIPAIPDNVVPGTKVRLEKKAAIHNGIICLNPKVITVLGGVVKSLYEEWQMNQKYSGF 183

Query: 186 SRSSLRPSQESGGGGPPPFEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVETTGNT 245
           SRSSLR SQESG GGPPPFEK QIGAP+ + +++GR       ST+K   P   ET    
Sbjct: 184 SRSSLRLSQESGTGGPPPFEKLQIGAPTRRSSEQGRISSCYG-STSKNMRPTVAETRQMG 242

Query: 246 KVMPSTSQQTTGLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVVESFPVQNQAASQKL 305
           +           L+  N+    K   + ERTEE PSSS+ RPKEV ES PVQNQAA+QKL
Sbjct: 243 R------DHNLHLKAENTEDDLKAASLIERTEEKPSSSEMRPKEVAESVPVQNQAAAQKL 296

Query: 306 LQKMSTSNQDNRHSRGRRYRGKGKEEEPAVFTLEEWEKRKAGAKPFVNHKLPDTSNDEDL 365
           LQKM+  N+D+RHS+GR++RGKGK+EE  V+TL+EWEKRKAG K  +  +L D S DEDL
Sbjct: 297 LQKMNNPNRDDRHSKGRKHRGKGKQEEAPVYTLDEWEKRKAGPKTSIKDELTDVSRDEDL 356

Query: 366 AWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYERDD 403
           AWQLQNQLD+ED+  +   H ++AENIRMSMF+YERD+
Sbjct: 357 AWQLQNQLDVEDNVLRD-THKAEAENIRMSMFNYERDE 393

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738885|emb|CBI28130.3| unnamed protein product [Vitis vinifera]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 237/395 (60%), Positives = 292/395 (73%), Gaps = 13/395 (3%)

Query: 11  VIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPRKVADSTESELLNTDLKSIGGKSLPD 70
           +++ L  RGWCFGN++EV A+I INSAL D+       DS ESEL N DL+SIG KSLPD
Sbjct: 1   MLETLTKRGWCFGNVEEVKAVIMINSALHDEG---CTVDSVESELANMDLRSIGAKSLPD 57

Query: 71  PT--RKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSH 128
           P+  RK S++ GP VLQ++SVRDIS+SSI + SGN  S RLL+L LTDG  E+TAIEYS 
Sbjct: 58  PSLLRKSSYLHGPKVLQISSVRDISQSSIADSSGNSSSRRLLRLNLTDGCTEMTAIEYSP 117

Query: 129 IPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSRS 188
           IP+IP +VVPGTKVRLE K  +H+GI+CLNP V+TVLGGVV SL+EEWQMN+KYS FSRS
Sbjct: 118 IPAIPDNVVPGTKVRLEKKAAIHNGIICLNPKVITVLGGVVKSLYEEWQMNQKYSGFSRS 177

Query: 189 SLRPSQESGGGGPPPFEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVETTGNTKVM 248
           SLR SQESG GGPPPFEK QIGAP+ + +++GR       ST+K   P   ET    +  
Sbjct: 178 SLRLSQESGTGGPPPFEKLQIGAPTRRSSEQGRI-SSCYGSTSKNMRPTVAETRQMGR-- 234

Query: 249 PSTSQQTTGLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVVESFPVQNQAASQKLLQK 308
                    L+  N+    K   + ERTEE PSSS+ RPKEV ES PVQNQAA+QKLLQK
Sbjct: 235 ----DHNLHLKAENTEDDLKAASLIERTEEKPSSSEMRPKEVAESVPVQNQAAAQKLLQK 290

Query: 309 MSTSNQDNRHSRGRRYRGKGKEEEPAVFTLEEWEKRKAGAKPFVNHKLPDTSNDEDLAWQ 368
           M+  N+D+RHS+GR++RGKGK+EE  V+TL+EWEKRKAG K  +  +L D S DEDLAWQ
Sbjct: 291 MNNPNRDDRHSKGRKHRGKGKQEEAPVYTLDEWEKRKAGPKTSIKDELTDVSRDEDLAWQ 350

Query: 369 LQNQLDLEDSHEQSGMHDSQAENIRMSMFSYERDD 403
           LQNQLD+ED+  +   H ++AENIRMSMF+YERD+
Sbjct: 351 LQNQLDVEDNVLRD-THKAEAENIRMSMFNYERDE 384

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356516918|ref|XP_003527139.1| PREDICTED: uncharacterized protein LOC100782461 [Glycine max]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 217/411 (52%), Positives = 280/411 (68%), Gaps = 26/411 (6%)

Query: 11  VIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPRKVADSTESELLNTDLKSIGGKSLPD 70
           V++ LR RGWC  +   + AII I SAL DD+   ++ DS ESELLN+DL+SI  KSLP 
Sbjct: 2   VLETLRKRGWCLEDTDRLKAIIDIQSALADDRS--RLVDSVESELLNSDLRSIAAKSLPQ 59

Query: 71  PT---RKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYS 127
           P+      + + GP VLQ++SVRDIS+SS++EF  N G  R+L+L LTDGH EITA+EYS
Sbjct: 60  PSLLRNASTFLHGPKVLQISSVRDISKSSVDEFLKNSGDRRVLRLCLTDGHYEITAVEYS 119

Query: 128 HIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSR 187
           HIPSIP +VVPGTK+RLENKV VH+GIVCLNP V+TVLGGVV SL+EEW+MN+KYS FSR
Sbjct: 120 HIPSIPDNVVPGTKIRLENKVAVHNGIVCLNPKVLTVLGGVVQSLYEEWEMNQKYSGFSR 179

Query: 188 SSLRPSQESGGGGPPPFEKFQIGAPS-----------HQLAQRG----RFYHDDSESTAK 232
           SSLR  +    GGPP F K Q+G+ S             +A  G    R       ++++
Sbjct: 180 SSLRKLENRDTGGPPQFVKLQVGSSSGIADYNSSRSRKPIAVVGEAEMRPTSTADYNSSR 239

Query: 233 TSEPVAVETTGNTKVMPSTSQQTTGLEKNNSVTS-PKVTRVEERTEEDPSSSQARPKEVV 291
           + +P+AV   G   + P   QQ    + + ++ S P   R E++     SSS  RPKEVV
Sbjct: 240 SRKPIAV--VGEAGLRPPDFQQDPNQKADANLQSKPPQERAEDKAS---SSSGTRPKEVV 294

Query: 292 ESFPVQNQAASQKLLQKMSTSNQDNRHSRGRRYRGKGKEEEPAVFTLEEWEKRKAGAKPF 351
           ES PVQNQAA+QKLLQK++  +Q++RH RG ++RGKGK+E+P VFTLEE+E RKA  KP 
Sbjct: 295 ESVPVQNQAAAQKLLQKLNHPSQNDRHHRGWKHRGKGKQEDPVVFTLEEYENRKAQTKPS 354

Query: 352 VNHKLPDTSNDEDLAWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYERD 402
           +     D S DE LA QLQNQLDLEDS    G ++ +A++IRMSMF+YERD
Sbjct: 355 IKDWDLDISRDEHLARQLQNQLDLEDSRVGRGTYEDKAQDIRMSMFAYERD 405

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549010|ref|XP_002515561.1| conserved hypothetical protein [Ricinus communis] gi|223545505|gb|EEF47010.1| conserved hypothetical protein [Ricinus communis]

 Score =  398 bits (1022), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 218/397 (54%), Positives = 278/397 (70%), Gaps = 25/397 (6%)

Query: 9   EAVIKALRSRGWCFGN-IQEVTAIIAINSALIDD-KDPRKVADSTESELLNTDLKSIGGK 66
           + VI+ LR+RGWCF +   ++ ++I I SAL DD  D   +A+S ES+LLN DLKS G K
Sbjct: 11  QVVIQTLRTRGWCFDDGSNQLKSLIVIQSALADDTNDATSIANSVESKLLNLDLKSFGAK 70

Query: 67  SLPDPT---RKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITA 123
           SLPD        SH+QGP VLQ++SVRDIS SSI+ FS +  + RLL+  LTDG+ EITA
Sbjct: 71  SLPDRDLLRNNTSHLQGPKVLQISSVRDISVSSIDGFS-DSSNRRLLRFTLTDGYNEITA 129

Query: 124 IEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYS 183
           IEYSHIPSIP DVVPGTKVRLENKVP+ +GI+CLNP V+T++GG V SL+EEWQM +KY 
Sbjct: 130 IEYSHIPSIPNDVVPGTKVRLENKVPIQNGIICLNPKVITLIGGAVQSLYEEWQMKQKYL 189

Query: 184 VFSRSSLRPSQESGGGGPPPFEKFQIGAPSHQLAQRGRFYHDDS-ESTAKTSEPVAVETT 242
               SS+R SQE+  G PP FEK QIGA     A R    H D  EST+K+S        
Sbjct: 190 SSFHSSIRLSQEADSG-PPQFEKLQIGA-----AFRCSSQHADCLESTSKSSV-----LA 238

Query: 243 GNTKVMPSTSQQTTGLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVVESFPVQNQAAS 302
           GNT +  S   Q    + ++ VT+   T + E+ E+  S S  R KEV ES PVQNQAA+
Sbjct: 239 GNTDIR-SIDMQQNAADLDDKVTT---TSLSEKVEQKSSKSNTRVKEVAESVPVQNQAAA 294

Query: 303 QKLLQKMSTSNQDNRHSRGRRYRGKGKEEEPAVFTLEEWEKRKAGAKPFVNHKLPDTSND 362
           QKLLQKM+  +Q +R+SRGR+++G+ K+EE  VFTL+EWEKRKAGAKP + +  PDTS D
Sbjct: 295 QKLLQKMNIPSQADRYSRGRKHKGRNKQEELQVFTLDEWEKRKAGAKPPMRNNFPDTSCD 354

Query: 363 EDLAWQLQNQLDLEDSHE---QSGMHDSQAENIRMSM 396
           EDLAWQLQNQLD+E S +   Q+GMH++  ++IRM+M
Sbjct: 355 EDLAWQLQNQLDMEHSQDLQVQTGMHNNVTDDIRMNM 391

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464290|ref|XP_004149862.1| PREDICTED: tudor domain-containing protein 3-like [Cucumis sativus]

 Score =  389 bits (1000), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 212/395 (53%), Positives = 269/395 (68%), Gaps = 15/395 (3%)

Query: 10  AVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPRKVADSTESELLNTDLKSIGGKSLP 69
           AV++ LR RGW F +  EV A+I I +AL DD  P  V DS ESEL+N DL+ IGGKSLP
Sbjct: 7   AVLETLRLRGWNFSDSDEVKAVITIATALADD--PSSVLDSVESELINIDLRFIGGKSLP 64

Query: 70  DPT--RKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYS 127
           +P   RK S I GPIVLQ++SV+DISRSS++         RLL+  LTDGH EITAIEYS
Sbjct: 65  EPALFRKSSRILGPIVLQISSVKDISRSSLDGILKASNGRRLLRFGLTDGHSEITAIEYS 124

Query: 128 HIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSR 187
           HIPSIP D+ PGTK+RLENK PVHSGI CL    ++VLGGVV +L+EEW+MN+KYS  SR
Sbjct: 125 HIPSIPDDIPPGTKIRLENKAPVHSGIACLGSKGLSVLGGVVPTLYEEWKMNQKYSGLSR 184

Query: 188 SSLRPSQESGGGGPPPFEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVETTGNTKV 247
            S+R SQ     GPPPFEK Q+GAPS +L Q+G+  +   ES++K++ P A   +GN + 
Sbjct: 185 ESMRLSQGGDVDGPPPFEKLQVGAPSQKLGQKGKSSYQQ-ESSSKSNRPSA--DSGNIEG 241

Query: 248 MPSTSQQTTGLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVVESFPVQNQAASQKLLQ 307
             +  QQ+  ++  NSV+        E+ EE PSSS+ RPKEV E+ PVQNQAASQKLL 
Sbjct: 242 KSTIQQQSADMKATNSVSH------LEKAEEKPSSSETRPKEVAEAVPVQNQAASQKLLF 295

Query: 308 KMSTSNQDNRHSRGRRYRGKGKEEEPAVFTLEEWEKRKAGAKPFVNHKLPDTSNDEDLAW 367
           K  TS +  R    R +RGKG+ E+  V+TLEE+E+RK+G           T+ DE+LA 
Sbjct: 296 K--TSQRGCRPFNSRNHRGKGRMEDQEVYTLEEYERRKSGTSQLPKETSSYTNQDEELAR 353

Query: 368 QLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYERD 402
           QLQN+ DLED H Q     + AE+IRMSMF++ERD
Sbjct: 354 QLQNKFDLEDFHVQDSTSRTNAEDIRMSMFNFERD 388

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42573433|ref|NP_974813.1| uncharacterized protein [Arabidopsis thaliana] gi|332005390|gb|AED92773.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  341 bits (874), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 198/419 (47%), Positives = 268/419 (63%), Gaps = 40/419 (9%)

Query: 5   DTSTEAVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPR-KVADSTESELLNTDLKSI 63
           D +   VI AL SRGWCF +++ + +++   S+LI   +    + +S E+ELLN D+K I
Sbjct: 11  DHTHTVVINALTSRGWCFRDVEYLKSLVTEISSLIGGGNKTGAIVESVEAELLNMDIKLI 70

Query: 64  GGKSLPDPT--RKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEI 121
           GGKSLPDPT  R+ SH+QGP VLQ++ VRD++RSS EEF G+    R+LK  LTDG  EI
Sbjct: 71  GGKSLPDPTELRRCSHLQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEI 130

Query: 122 TAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRK 181
           +A+EYSHIP+I  DV PGTKVRLENK  +  G+VCL P  VTVLGG V SL EEWQM +K
Sbjct: 131 SALEYSHIPTINNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEWQMKKK 190

Query: 182 YSVFSRSSLRPSQES-GGGGPPPFEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVE 240
           Y+  +R     SQES  G GPPPFE+ +I   SH        + D +++T++ + P+A E
Sbjct: 191 YASLAR-----SQESKAGDGPPPFEELKIRTGSH--------HRDYNKTTSRNNVPIAAE 237

Query: 241 TT--------GNTKVMPSTSQQTT-GLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVV 291
           ++        G +  +    + T   +++N + + PK++ VE   +E  SSS  RPK+VV
Sbjct: 238 SSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADSDPKIS-VEVENQEKRSSSDTRPKQVV 296

Query: 292 ESFPVQNQAASQKLLQKMSTSNQDNRHSR-------GRRYRGKGKEEEPAVFTLEEWEKR 344
           E+ P+QNQAA+Q LL+KM  S+ ++R  +       GR      +EE+ AVFTL+EWEKR
Sbjct: 297 EAVPLQNQAAAQILLEKMKHSSSNDRQYQGRRGRGRGRGRGRGREEEDSAVFTLDEWEKR 356

Query: 345 K--AGAKPFVNHKLPDTSNDEDLAWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYER 401
               GA P  NH   DT+ DEDLAWQLQNQ DLEDS+E  G   + A +IRM+MF Y R
Sbjct: 357 NTGGGALPTANHP-SDTTRDEDLAWQLQNQFDLEDSYEMPG---AGAADIRMNMFDYGR 411

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18420083|ref|NP_568387.1| uncharacterized protein [Arabidopsis thaliana] gi|30687567|ref|NP_850854.1| uncharacterized protein [Arabidopsis thaliana] gi|20466596|gb|AAM20615.1| putative protein [Arabidopsis thaliana] gi|21618048|gb|AAM67098.1| unknown [Arabidopsis thaliana] gi|23198178|gb|AAN15616.1| putative protein [Arabidopsis thaliana] gi|222423574|dbj|BAH19756.1| AT5G19950 [Arabidopsis thaliana] gi|332005388|gb|AED92771.1| uncharacterized protein [Arabidopsis thaliana] gi|332005389|gb|AED92772.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  340 bits (871), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 198/419 (47%), Positives = 268/419 (63%), Gaps = 38/419 (9%)

Query: 5   DTSTEAVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPR-KVADSTESELLNTDLKSI 63
           D +   VI AL SRGWCF +++ + +++   S+LI   +    + +S E+ELLN D+K I
Sbjct: 11  DHTHTVVINALTSRGWCFRDVEYLKSLVTEISSLIGGGNKTGAIVESVEAELLNMDIKLI 70

Query: 64  GGKSLPDPT--RKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEI 121
           GGKSLPDPT  R+ SH+QGP VLQ++ VRD++RSS EEF G+    R+LK  LTDG  EI
Sbjct: 71  GGKSLPDPTELRRCSHLQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEI 130

Query: 122 TAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRK 181
           +A+EYSHIP+I  DV PGTKVRLENK  +  G+VCL P  VTVLGG V SL EEWQM +K
Sbjct: 131 SALEYSHIPTINNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEWQMKKK 190

Query: 182 YSVFSRSSLRPSQES-GGGGPPPFEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVE 240
           Y+  +R     SQES  G GPPPFE+ +I   SH        + D +++T++ + P+A E
Sbjct: 191 YASLAR-----SQESKAGDGPPPFEELKIRTGSH--------HRDYNKTTSRNNVPIAAE 237

Query: 241 TT--------GNTKVMPSTSQQTT-GLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVV 291
           ++        G +  +    + T   +++N + + PK++ VE   +E  SSS  RPK+VV
Sbjct: 238 SSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADSDPKIS-VEVENQEKRSSSDTRPKQVV 296

Query: 292 ESFPVQNQAASQKLLQKMSTSNQDNRHSR-------GRRYRGKGKEEEPAVFTLEEWEKR 344
           E+ P+QNQAA+Q LL+KM  S+ ++R  +       GR      +EE+ AVFTL+EWEKR
Sbjct: 297 EAVPLQNQAAAQILLEKMKHSSSNDRQYQGRRGRGRGRGRGRGREEEDSAVFTLDEWEKR 356

Query: 345 K--AGAKPFVNHKLPDTSNDEDLAWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYER 401
               GA P  NH   DT+ DEDLAWQLQNQ DLEDS+ Q  M  + A +IRM+MF Y R
Sbjct: 357 NTGGGALPTANHP-SDTTRDEDLAWQLQNQFDLEDSYGQE-MPGAGAADIRMNMFDYGR 413

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812183|ref|XP_002873975.1| hypothetical protein ARALYDRAFT_488891 [Arabidopsis lyrata subsp. lyrata] gi|297319812|gb|EFH50234.1| hypothetical protein ARALYDRAFT_488891 [Arabidopsis lyrata subsp. lyrata]

 Score =  338 bits (867), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 198/418 (47%), Positives = 266/418 (63%), Gaps = 40/418 (9%)

Query: 10  AVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPR-KVADSTESELLNTDLKSIGGKSL 68
            VI AL SRGWCF +++ + +++   S+LI   +    V +S E+ELLN D+K IGGKSL
Sbjct: 16  VVINALTSRGWCFRDVEYLKSLVTDISSLIGGGNQTGAVVESVEAELLNMDIKLIGGKSL 75

Query: 69  PDPT--RKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEY 126
           PDPT  R+ SH+QGP VLQ++SVRD++RSS EEF G+    R+LK  LTDG  EI+A+EY
Sbjct: 76  PDPTELRRCSHLQGPKVLQISSVRDVTRSSAEEFLGSSTGKRVLKFALTDGKTEISALEY 135

Query: 127 SHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFS 186
           SHIP+I  DV PGTKVRLENK  +  G+VCL P  VTVLGG V SL EEWQM +KY+  +
Sbjct: 136 SHIPTISNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEWQMKKKYANLA 195

Query: 187 RSSLRPSQESGGG-GPPPFEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVETT-GN 244
           R     SQES  G GPPPFE+ QI   SH        + D + +T++   P A E++  +
Sbjct: 196 R-----SQESKAGVGPPPFEELQIRTGSH--------HRDYNRTTSRNIVPTAAESSVKH 242

Query: 245 TKVMPSTSQQTTG--------LEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVVESFPV 296
             V    S +  G        +++N + + PK++ V+   +E PSSS  RPK+VVE+ P+
Sbjct: 243 AGVERGESSEVDGNKRGTYKNIQRNPADSDPKIS-VKVENQEKPSSSDTRPKQVVEAVPL 301

Query: 297 QNQAASQKLLQKMSTSNQDNRHSR---------GRRYRGKGKEEEPAVFTLEEWEKRKA- 346
           QNQAA+Q LL+KM  S+ +++  +         GR      +EE+ AVFTL+EWEKR   
Sbjct: 302 QNQAAAQILLEKMKHSSSNDQQYQGRRGRGRGRGRGRGRGREEEDSAVFTLDEWEKRNTG 361

Query: 347 -GAKPFVNHKLPDTSNDEDLAWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYERDD 403
            G  P  +H   DT+ DEDLAWQLQNQ DLE+S+ Q  +H + A +IRM+MF Y R D
Sbjct: 362 RGVLPIADHP-SDTTRDEDLAWQLQNQFDLEESYVQE-VHGTGAADIRMNMFDYGRPD 417

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147838988|emb|CAN77066.1| hypothetical protein VITISV_030347 [Vitis vinifera]

 Score =  324 bits (831), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 171/297 (57%), Positives = 209/297 (70%), Gaps = 22/297 (7%)

Query: 121 ITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNR 180
           +TAIEYS IP+IP +VVPGTKVRLE K  +H+GI+CLNP V+TVLGGVV SL+EEWQMN+
Sbjct: 1   MTAIEYSPIPAIPDNVVPGTKVRLEKKAAIHNGIICLNPKVITVLGGVVKSLYEEWQMNQ 60

Query: 181 KYSVFSRSSLRPSQESGGGGPPPFEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVE 240
           KYS FSRSSLR SQESG GGPPPFEK QIGAP+ + +++GR       ST+K   P   E
Sbjct: 61  KYSGFSRSSLRLSQESGTGGPPPFEKLQIGAPTRRSSEQGRI-SSCYGSTSKNMRPTVAE 119

Query: 241 TTGNTKVMPSTSQQTTGLEKNNSVTSPKVTRVEERTEEDPSSSQARPKE----------- 289
           T    +           L+  N+    K   + ERTEE PSSS+ RPKE           
Sbjct: 120 TRQMGR------DHNLHLKAENTEDDLKAASLIERTEEKPSSSEMRPKEVSISALTLICV 173

Query: 290 ---VVESFPVQNQAASQKLLQKMSTSNQDNRHSRGRRYRGKGKEEEPAVFTLEEWEKRKA 346
              V ES PVQNQAA+QKLLQKM+  N D+RHS+GR++RGKGK+EE  V+TL+EWEKRKA
Sbjct: 174 TLXVAESVPVQNQAAAQKLLQKMNNPNWDDRHSKGRKHRGKGKQEEAPVYTLDEWEKRKA 233

Query: 347 GAKPFVNHKLPDTSNDEDLAWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYERDD 403
           G K  +  +L D S DEDLAWQLQNQLD+ED+  +   H ++AENIRMSMF+YERD+
Sbjct: 234 GPKTSIKDELTDVSRDEDLAWQLQNQLDVEDNVLRD-THKAEAENIRMSMFNYERDE 289

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297596207|ref|NP_001042189.2| Os01g0178100 [Oryza sativa Japonica Group] gi|55296106|dbj|BAD67825.1| unknown protein [Oryza sativa Japonica Group] gi|55296246|dbj|BAD67987.1| unknown protein [Oryza sativa Japonica Group] gi|255672930|dbj|BAF04103.2| Os01g0178100 [Oryza sativa Japonica Group]

 Score =  312 bits (800), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 183/406 (45%), Positives = 248/406 (61%), Gaps = 48/406 (11%)

Query: 9   EAVIKALRSRGWCFGN-----IQEVTAIIAINSALIDDKDPRKVADSTESELLNTDLKSI 63
           E ++++L +RGWCF +     IQE+               P    ++ E+EL++ DL+  
Sbjct: 17  ERLLQSLSARGWCFRDPSNEIIQELL-----------HASPSPSPEAVETELVDVDLRLF 65

Query: 64  GGKSLPDPT------RKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDG 117
           GGKSLPD        R+ S++ GPIVLQV SVRDI RS I+    NP  +RLL+ VLTDG
Sbjct: 66  GGKSLPDRAAAAATGRRLSYLHGPIVLQVVSVRDIYRSIIDASFKNPQQHRLLRFVLTDG 125

Query: 118 HIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQ 177
             E  AIE+  IP I  D+ PGTK+ LENK+P+H+GI+CL+   ++++GGVV SL+EEWQ
Sbjct: 126 ISEAVAIEFFPIPFIIEDIAPGTKICLENKIPIHNGILCLSAKNISIMGGVVQSLYEEWQ 185

Query: 178 MNRKYSVFSRSSLRPSQESGGGGPPPFEKFQIGA-PSHQLAQRGRFYHDDSESTAKTS-E 235
           MN+K+S  SRSSLR SQ   G GPPPFEK  + A PS     R + Y D+     +   +
Sbjct: 186 MNQKFSGLSRSSLRLSQNDDGVGPPPFEKLDVEARPSR--TSRSQTYSDNKARKPEVGRQ 243

Query: 236 PVAVETTGNTKVMPSTSQQTTGLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVVESFP 295
            V+V ++G          +++  E   S   PK            S S  RPKEV E+ P
Sbjct: 244 NVSVSSSGK------PVNESSSDENKESAVEPK-----------QSISDGRPKEVSEAIP 286

Query: 296 VQNQAASQKLLQKMSTSNQDNRHSRGRRYRGKGKEEEPAVFTLEEWEKRK-AGAKPFVNH 354
           VQNQA +QKLLQKM+ +  ++R+ RG R++GKG++E+  VFTL+EWEKRK AG K     
Sbjct: 287 VQNQATAQKLLQKMTQAAPEDRYGRGHRFKGKGRQEDTPVFTLDEWEKRKSAGLKSTAQS 346

Query: 355 KLPDTSNDEDLAWQLQNQLDLEDSHEQSGM-HDSQAENIRMSMFSY 399
            + DTS DE+LA QLQ QLDLEDS+   G+   S A+ +RMSMFS+
Sbjct: 347 YIDDTSRDEELARQLQEQLDLEDSY---GVPESSDADRLRMSMFSF 389

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	430
TAIR|locus:2147615	443	AT5G19950 "AT5G19950" [Arabido	0.9	0.873	0.451	1.1e-80
UNIPROTKB|F1NAJ8	723	TDRD3 "Tudor domain-containing	0.309	0.183	0.386	5.4e-18
UNIPROTKB|Q5ZMS6	741	TDRD3 "Tudor domain-containing	0.309	0.179	0.386	5.6e-18
UNIPROTKB|Q6P1U3	710	tdrd3 "Tudor domain-containing	0.309	0.187	0.394	6.7e-18
MGI|MGI:2444023	743	Tdrd3 "tudor domain containing	0.309	0.179	0.379	6.2e-17
FB|FBgn0036450	836	CG13472 [Drosophila melanogast	0.388	0.199	0.337	6.6e-16
UNIPROTKB|G3X6R8	722	TDRD3 "Tudor domain-containing	0.260	0.155	0.385	2.5e-15
UNIPROTKB|Q2HJG4	722	TDRD3 "Tudor domain-containing	0.260	0.155	0.385	2.5e-15
ZFIN|ZDB-GENE-040426-19	734	tdrd3 "tudor domain containing	0.309	0.181	0.350	1.2e-14
UNIPROTKB|Q9H7E2	651	TDRD3 "Tudor domain-containing	0.190	0.125	0.426	1.1e-10

TAIR|locus:2147615 AT5G19950 "AT5G19950" [Arabidopsis thaliana (taxid:3702)]

 Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
 Identities = 193/427 (45%), Positives = 260/427 (60%)

Query:     5 DTSTEAVIKALRSRGWCFGNIQEVTAIIAINSALIDDKDPR-KVADSTESELLNTDLKSI 63
             D +   VI AL SRGWCF +++ + +++   S+LI   +    + +S E+ELLN D+K I
Sbjct:    11 DHTHTVVINALTSRGWCFRDVEYLKSLVTEISSLIGGGNKTGAIVESVEAELLNMDIKLI 70

Query:    64 GGKSLPDPT--RKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEI 121
             GGKSLPDPT  R+ SH+QGP VLQ++ VRD++RSS EEF G+    R+LK  LTDG  EI
Sbjct:    71 GGKSLPDPTELRRCSHLQGPKVLQISYVRDVTRSSAEEFVGSSTGKRVLKFALTDGKTEI 130

Query:   122 TAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRK 181
             +A+EYSHIP+I  DV PGTKVRLENK  +  G+VCL P  VTVLGG V SL EEWQM +K
Sbjct:   131 SALEYSHIPTINNDVTPGTKVRLENKAVIRDGLVCLTPKEVTVLGGYVQSLTEEWQMKKK 190

Query:   182 YSVFSRSSLRPSQESXXXXXXX-FEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVE 240
             Y+     SL  SQES        FE+ +I   SH        + D +++T++ + P+A E
Sbjct:   191 YA-----SLARSQESKAGDGPPPFEELKIRTGSH--------HRDYNKTTSRNNVPIAAE 237

Query:   241 TT--------GNTKVMPSTSQQTT-GLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVV 291
             ++        G +  +    + T   +++N + + PK++ VE   +E  SSS  RPK+VV
Sbjct:   238 SSVKHAGGEKGESSEVDGNKRGTNKNIQRNPADSDPKIS-VEVENQEKRSSSDTRPKQVV 296

Query:   292 ESFPVQNQAASQKLLQKMSTSNQDNRH-------SXXXXXXXXXXXXXPAVFTLEEWEKR 344
             E+ P+QNQAA+Q LL+KM  S+ ++R                       AVFTL+EWEKR
Sbjct:   297 EAVPLQNQAAAQILLEKMKHSSSNDRQYQGRRGRGRGRGRGRGREEEDSAVFTLDEWEKR 356

Query:   345 KAG--AKPFVNHKLPDTSNDEDLAWQLQNQLDLEDSHEQSGMHDSQAENIRMSMFSYER- 401
               G  A P  NH   DT+ DEDLAWQLQNQ DLEDS+ Q  M  + A +IRM+MF Y R 
Sbjct:   357 NTGGGALPTANHP-SDTTRDEDLAWQLQNQFDLEDSYGQE-MPGAGAADIRMNMFDYGRT 414

Query:   402 -DDRVHG 407
              D+  HG
Sbjct:   415 EDNFGHG 421

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|F1NAJ8 TDRD3 "Tudor domain-containing protein 3" [Gallus gallus (taxid:9031)]

 Score = 245 (91.3 bits), Expect = 5.4e-18, P = 5.4e-18
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query:    56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
             LNTDL++IG K LP      K   ++GP VLQ+  +R++S     E S    + R+L+L 
Sbjct:    41 LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKIRNVSAPKDNEES--QAAPRMLRLQ 98

Query:   114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
             +TDGH   TAIEY+ +  I  +  PGTK++L   + V +G + L+ +   VLGG V  L 
Sbjct:    99 MTDGHTSCTAIEYNSMSKISLNTPPGTKIKLSGIIEVRNGFLLLDDSNTAVLGGEVEHLI 158

Query:   174 EEWQMNRKYSVFSRSSL 190
             E+W++ R  +  SRS++
Sbjct:   159 EKWELQRSLAKHSRSNI 175

GO:0003723 "RNA binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=IEA

UNIPROTKB|Q5ZMS6 TDRD3 "Tudor domain-containing protein 3" [Gallus gallus (taxid:9031)]

 Score = 245 (91.3 bits), Expect = 5.6e-18, P = 5.6e-18
 Identities = 53/137 (38%), Positives = 81/137 (59%)

Query:    56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
             LNTDL++IG K LP      K   ++GP VLQ+  +R++S     E S    + R+L+L 
Sbjct:    41 LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKIRNVSAPKDNEES--QAAPRMLRLQ 98

Query:   114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
             +TDGH   TAIEY+ +  I  +  PGTK++L   + V +G + L+ +   VLGG V  L 
Sbjct:    99 MTDGHTSCTAIEYNSMSKISLNTPPGTKIKLSGIIEVRNGFLLLDDSNTAVLGGEVEHLI 158

Query:   174 EEWQMNRKYSVFSRSSL 190
             E+W++ R  +  SRS++
Sbjct:   159 EKWELQRSLAKHSRSNI 175

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

UNIPROTKB|Q6P1U3 tdrd3 "Tudor domain-containing protein 3" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 238 (88.8 bits), Expect = 6.7e-18, Sum P(3) = 6.7e-18
 Identities = 54/137 (39%), Positives = 79/137 (57%)

Query:    56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
             LNTDL++ G K LP+     K   + GP VLQ+  +R+IS     E S    + R+L+L 
Sbjct:     6 LNTDLRTTGKKFLPNDINGGKVEKVNGPCVLQIQKIRNISAPKDNEES--QAAPRMLRLQ 63

Query:   114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
             LTDGH   TAIE +++  I  +  PGTK++L   + V +G + L+     VLGG V  L 
Sbjct:    64 LTDGHTSCTAIELNYLSKISLNTPPGTKIKLLGTIEVKNGYLLLDDTNTVVLGGEVEHLI 123

Query:   174 EEWQMNRKYSVFSRSSL 190
             E+W++ R  S  SRS++
Sbjct:   124 EKWELQRSLSKHSRSNI 140

GO:0003682 "chromatin binding" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

MGI|MGI:2444023 Tdrd3 "tudor domain containing 3" [Mus musculus (taxid:10090)]

 Score = 239 (89.2 bits), Expect = 6.2e-17, Sum P(2) = 6.2e-17
 Identities = 52/137 (37%), Positives = 81/137 (59%)

Query:    56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
             LNTDL++IG K LP      K   ++GP VLQ+  VR+++     E S    + R+L++ 
Sbjct:    41 LNTDLRTIGKKFLPSDINGGKVEKLEGPCVLQIQKVRNVAAPKDNEES--QAAPRMLRVQ 98

Query:   114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
             +TDGH   TA+E+S+I  I  +  PGTKV+L   V + +G + L+ +  TVLGG V  L 
Sbjct:    99 MTDGHTSCTAVEFSYISKISLNTPPGTKVKLSGTVDIKNGFLLLSDSNTTVLGGEVEHLI 158

Query:   174 EEWQMNRKYSVFSRSSL 190
             ++W + R     +RS++
Sbjct:   159 DKWALQRSLLKHNRSNI 175

GO:0003682 "chromatin binding" evidence=ISO

GO:0003713 "transcription coactivator activity" evidence=ISO

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISO

FB|FBgn0036450 CG13472 [Drosophila melanogaster (taxid:7227)]

 Score = 219 (82.2 bits), Expect = 6.6e-16, Sum P(2) = 6.6e-16
 Identities = 61/181 (33%), Positives = 98/181 (54%)

Query:    13 KALRSRGWCFGNIQEVTAIIAINSALIDDKDPRKVADSTESELLNTDLKSIGGKSLPDPT 72
             K LR  GW     +E   I+   +  +  +D RK+ +    + LN DL+ IGG +LP   
Sbjct:     5 KKLREVGWYL--TEEGLKIV---TTAVGSEDVRKIVN----DALNRDLRDIGGGALP-AK 54

Query:    73 RKFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSI 132
             R+ + + G IVLQV  VR+I+     E S    + RLL+L L+DG   I A+E   +P +
Sbjct:    55 REDATLPGKIVLQVQRVRNIAAPKANEES--KAAPRLLQLDLSDGQNSIKALELEPVPQL 112

Query:   133 PYDVVPGTKVRLE-NKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSRSSLR 191
               +V PG+K+  +  K+ +  G + L  + + +LGG V +L+E+W + R    ++RS  R
Sbjct:   113 NLNVAPGSKIYFKAEKLQLMQGFLLLKSSEIQLLGGRVDALYEKWDLARTMMRYARSG-R 171

Query:   192 P 192
             P
Sbjct:   172 P 172

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0046331 "lateral inhibition" evidence=IMP

UNIPROTKB|G3X6R8 TDRD3 "Tudor domain-containing protein 3" [Bos taurus (taxid:9913)]

 Score = 222 (83.2 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 44/114 (38%), Positives = 72/114 (63%)

Query:    77 HIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDV 136
             +++GP VLQ+  +R+++     E S    + R+L+L +TDGHI  TA+E+S++  I  + 
Sbjct:    42 NLEGPCVLQIQKIRNVAAPKDNEES--QAAPRMLRLQMTDGHISCTAVEFSYLSKISLNT 99

Query:   137 VPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSRSSL 190
              PGTKV+L   V + +G + LN +  TVLGG V  L E+W++ R  S  +RS++
Sbjct:   100 PPGTKVKLSGAVDIKNGFLLLNDSNTTVLGGEVEHLIEKWELQRSLSKHNRSNI 153

GO:0035064 "methylated histone residue binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0003713 "transcription coactivator activity" evidence=IEA

GO:0003682 "chromatin binding" evidence=IEA

UNIPROTKB|Q2HJG4 TDRD3 "Tudor domain-containing protein 3" [Bos taurus (taxid:9913)]

 Score = 222 (83.2 bits), Expect = 2.5e-15, P = 2.5e-15
 Identities = 44/114 (38%), Positives = 72/114 (63%)

Query:    77 HIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDV 136
             +++GP VLQ+  +R+++     E S    + R+L+L +TDGHI  TA+E+S++  I  + 
Sbjct:    42 NLEGPCVLQIQKIRNVAAPKDNEES--QAAPRMLRLQMTDGHISCTAVEFSYLSKISLNT 99

Query:   137 VPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVFSRSSL 190
              PGTKV+L   V + +G + LN +  TVLGG V  L E+W++ R  S  +RS++
Sbjct:   100 PPGTKVKLSGAVDIKNGFLLLNDSNTTVLGGEVEHLIEKWELQRSLSKHNRSNI 153

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0016568 "chromatin modification" evidence=IEA

ZFIN|ZDB-GENE-040426-19 tdrd3 "tudor domain containing 3" [Danio rerio (taxid:7955)]

 Score = 216 (81.1 bits), Expect = 1.2e-14, P = 1.2e-14
 Identities = 48/137 (35%), Positives = 77/137 (56%)

Query:    56 LNTDLKSIGGKSLPDPTR--KFSHIQGPIVLQVASVRDISRSSIEEFSGNPGSNRLLKLV 113
             LN DL+ IG   LP      +   ++GP VLQV  +R+++ S   E S    + R+L++ 
Sbjct:    42 LNNDLRPIGKSFLPADINSGRIEKLEGPCVLQVQKIRNVAASKDHEES--QAAPRMLRVQ 99

Query:   114 LTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGVVASLH 173
             +TDGH   T +E+  +  I  +  PGTKV+L   V V +GI+ L+ + + VLGG V  + 
Sbjct:   100 MTDGHTACTGLEFKQLSKISLNTPPGTKVKLLGVVQVKNGILLLDDSKIAVLGGEVDHMI 159

Query:   174 EEWQMNRKYSVFSRSSL 190
             E+W+  R  +  SR ++
Sbjct:   160 EKWEFQRSLAKHSRRNI 176

GO:0005634 "nucleus" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0003713 "transcription coactivator activity" evidence=ISS

GO:2001141 "regulation of RNA biosynthetic process" evidence=ISS

GO:0003682 "chromatin binding" evidence=ISS

GO:0016568 "chromatin modification" evidence=IEA

UNIPROTKB|Q9H7E2 TDRD3 "Tudor domain-containing protein 3" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
 Identities = 35/82 (42%), Positives = 54/82 (65%)

Query:   109 LLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV 168
             +L+L +TDGHI  TA+E+S++  I  +  PGTKV+L   V + +G + LN +  TVLGG 
Sbjct:     1 MLRLQMTDGHISCTAVEFSYMSKISLNTPPGTKVKLSGIVDIKNGFLLLNDSNTTVLGGE 60

Query:   169 VASLHEEWQMNRKYSVFSRSSL 190
             V  L E+W++ R  S  +RS++
Sbjct:    61 VEHLIEKWELQRSLSKHNRSNI 82

GO:0016568 "chromatin modification" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0003713 "transcription coactivator activity" evidence=IDA

GO:0003682 "chromatin binding" evidence=IDA

GO:0035064 "methylated histone residue binding" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	430
pfam08585	88	pfam08585, DUF1767, Domain of unknown function (DU	2e-07
PRK12678	672	PRK12678, PRK12678, transcription termination fact	0.004

>gnl|CDD|219918 pfam08585, DUF1767, Domain of unknown function (DUF1767)

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)

Query: 54  ELLNTDLKSIGGKSLPD--PTRKFSHIQGPIVLQVASVRDISRSSIEEFS 101
           + LN+DL+ IG   LPD     +   ++GPIVLQV S+RDIS+    +  
Sbjct: 39  QFLNSDLRDIGSGVLPDDISEVQKITLEGPIVLQVNSIRDISQPLYNQLE 88

Eukaryotic domain of unknown function. This domain is found to the N-terminus of the nucleic acid binding domain. Length = 88

>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho; Provisional

 Score = 39.5 bits (93), Expect = 0.004
 Identities = 34/234 (14%), Positives = 63/234 (26%), Gaps = 15/234 (6%)

Query: 197 GGGGPPPFEKFQIGAPSHQLAQRGRFYHDDSESTAKTSEPVAVETTGNTKVMPSTSQQTT 256
           GGG           A + + A R       + + A+ +E  A E           ++   
Sbjct: 60  GGGAAAAAATPAAPAAAARRAAR-------AAAAARQAEQPAAEAAAAKAEAAPAARAAA 112

Query: 257 GLEKNNSVTSPKVTRVEERTEEDPSSSQARPKEVVESFPVQNQAASQKLLQKMSTSNQDN 316
                 +         E R   + +   A  K        +  A   +      T  ++ 
Sbjct: 113 AAAAEAASAPEAAQARERRERGEAARRGAARKAGEGG---EQPATEARADAAERTEEEER 169

Query: 317 RHSRGRRYRGKGKEEEPAVFTLEEWEKRKAGAKPFVNHKLPDTSNDEDLAWQLQNQLDLE 376
              R R  R   + E          E+ + G     + +      ++    + + + D  
Sbjct: 170 DERRRRGDREDRQAEAERGERGRREERGRDG-----DDRDRRDRREQGDRREERGRRDGG 224

Query: 377 DSHEQSGMHDSQAENIRMSMFSYERDDRVHGTENRGRGRGRGRRKGRGRGRGRG 430
           D   +    D +      +       D   G    GR   R R + R   RG  
Sbjct: 225 DRRGRRRRRDRRDARGDDNREDRGDRDGDDGEGRGGRRGRRFRDRDRRGRRGGD 278

Length = 672

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	430
PF08585	90	DUF1767: Domain of unknown function (DUF1767); Int	99.78
KOG3683	460	consensus Uncharacterized conserved protein [Funct	99.76
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	96.85
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	94.9
KOG3428	109	consensus Small nuclear ribonucleoprotein SMD1 and	92.63
KOG3683	460	consensus Uncharacterized conserved protein [Funct	89.94
cd04488	75	RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB f	88.02
PF14619	74	SnAC: Snf2-ATP coupling, chromatin remodelling com	84.33
PF04057	101	Rep-A_N: Replication factor-A protein 1, N-termina	83.22
cd04492	83	YhaM_OBF_like YhaM_OBF_like: A subfamily of OB fol	82.97
cd04487	73	RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB f	82.9
PF01336	75	tRNA_anti-codon: OB-fold nucleic acid binding doma	82.34

>PF08585 DUF1767: Domain of unknown function (DUF1767); InterPro: IPR013894 This domain is present in eukaryotic proteins of unknown function, and is sometimes found to the N terminus of ubiquitin-binding and nucleic acid-binding domains

Probab=99.78  E-value=1.2e-19  Score=150.25  Aligned_cols=86  Identities=34%  Similarity=0.584  Sum_probs=65.8

Q ss_pred             HHHHHHCCceeCchHHHHHHHH-HHhhcCCCCChhHHHHHHHHHHHHhhhhhcCCCCCCCcc--ccccccCCceEEEEee
Q 014129           12 IKALRSRGWCFGNIQEVTAIIA-INSALIDDKDPRKVADSTESELLNTDLKSIGGKSLPDPT--RKFSHIQGPIVLQVAS   88 (430)
Q Consensus        12 ~~~L~~~Gw~L~~~eWLk~Cv~-i~~~~~~~~~~~~~~~~V~~qlL~sDLr~ig~~~LP~~~--~k~~~L~Gp~VLQI~~   88 (430)
                      ++.|+++||||++ +||++|++ ++.+.+.  +...+.+.|+.+||++||++++.++||+++  .+..+|+||+||||++
T Consensus         1 ~~~L~~~g~~l~~-~wl~~c~~~~~~~~~~--~~~~~~~~v~~~~L~sDL~~~~~~~LP~~i~~~~~~~l~gp~vlQV~~   77 (90)
T PF08585_consen    1 MEWLNKRGWHLSP-EWLEECVEYLQQEHPG--DLEELAEEVYEQLLNSDLRDSGSPSLPDDIASQKKTTLPGPVVLQVNS   77 (90)
T ss_dssp             HHHHHHH-----H-HHHHHHHHHHHHHHT----HHHHHHHHHHHHHTS-HHHH----S-TTTTT-SEEEEEEEEEEEEEE
T ss_pred             ChHHHhcCCCcCH-HHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHchhhhccCCCCCcchhhCCccEeCCCEEEEEee
Confidence            3689999999997 89999999 7777765  568999999999999999999999999988  3578899999999999


Q ss_pred             eeecccchhhhh
Q 014129           89 VRDISRSSIEEF  100 (430)
Q Consensus        89 I~DIs~s~~~q~  100 (430)
                      |+|||+|+++|+
T Consensus        78 i~dIs~s~~~q~   89 (90)
T PF08585_consen   78 IRDISASAYSQL   89 (90)
T ss_dssp             EEESHHHHHHHH
T ss_pred             eeecccChHhhc
Confidence            999999999886

; PDB: 3NBI_A.

>KOG3683 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.76  E-value=3.8e-19  Score=184.44  Aligned_cols=115  Identities=30%  Similarity=0.415  Sum_probs=100.7

Q ss_pred             ecccchhhhhcc--CCCCCceEEEEEecCceEEEEeecccCCCCCCCCCCCceEEEeCCceEeeeEEEEeCCcEEEeccc
Q 014129           91 DISRSSIEEFSG--NPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVLGGV  168 (430)
Q Consensus        91 DIs~s~~~q~~~--~~~~~RmLKL~LTDG~~~i~AiE~~pI~~Lsl~tpPGtKIlLkg~v~vrrGvLLL~p~Nv~VLGG~  168 (430)
                      |++.+..+++.+  ...+.+||+|.||||+..|+|+||.+|+.|.++++|||||++.+.+.|+.|+|||.+.||.||||.
T Consensus         1 n~~~~~~~e~~~~~~~~~s~ml~l~LtDg~~si~a~el~~~pql~~~~~pgtkIl~~g~vd~~~g~LlL~~~nv~~lgg~   80 (460)
T KOG3683|consen    1 NQATPRSTETQNQGVSKPSILLQLQLTDGHNSIHALELQTIPQLVSDLPPGTKILFTGKVDIKAGFLLLDQSNVRFLGGM   80 (460)
T ss_pred             CcccccccccccccccccchhhhhhhhcccccceeeecccccceeeccCCCCceEEeechhhccceeEecccceeeeccc
Confidence            566677666543  334456999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHhhhhhhhcccccCCCCCCCCCCCCCCCCccCCCC
Q 014129          169 VASLHEEWQMNRKYSVFSRSSLRPSQESGGGGPPPFEKFQIG  210 (430)
Q Consensus       169 Ve~L~e~W~~~r~l~~~~r~~~~~~~~~~~~gPPpFvpf~~~  210 (430)
                      |++|+++|.+++.+.++.+....+     ..++|+|++|+..
T Consensus        81 Ve~l~e~~~ie~sl~k~~~~~~~v-----~~~~p~~~~~g~~  117 (460)
T KOG3683|consen   81 VEALIEKWEIEISLAKQLGSKNKV-----EKLIPGAIGFGRK  117 (460)
T ss_pred             hHHHHHHHHHHHHHHHhcccccch-----hccCccccccCcc
Confidence            999999999999999998754433     4479999999874

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=96.85  E-value=0.00026  Score=76.71  Aligned_cols=24  Identities=63%  Similarity=1.111  Sum_probs=0.0

Q ss_pred             CCcCCCCCCCCCCCCCCCCCCCCC
Q 014129          407 GTENRGRGRGRGRRKGRGRGRGRG  430 (430)
Q Consensus       407 ~grgrgRGRGrgr~~~~~~~~~~~  430 (430)
                      +||||||||||++|+|||||+|||
T Consensus       531 ~~~g~gr~rg~~~ggg~grg~~r~  554 (556)
T PF05918_consen  531 RGRGGGRGRGRRSGGGRGRGRGRG  554 (556)
T ss_dssp             ------------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCccccc
Confidence            444555555544444555555555

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=94.90  E-value=0.0072  Score=65.86  Aligned_cols=21  Identities=67%  Similarity=1.267  Sum_probs=0.0

Q ss_pred             CCCCCCCCCCCCCCCCCCCCC
Q 014129          410 NRGRGRGRGRRKGRGRGRGRG  430 (430)
Q Consensus       410 grgRGRGrgr~~~~~~~~~~~  430 (430)
                      +|||||||||||++|+|||||
T Consensus       530 ~~~~g~gr~rg~~~ggg~grg  550 (556)
T PF05918_consen  530 GRGRGGGRGRGRRSGGGRGRG  550 (556)
T ss_dssp             ---------------------
T ss_pred             CCCCCCCCCCCCCCCCCCCCc
Confidence            445555555555555566665

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG3428 consensus Small nuclear ribonucleoprotein SMD1 and related snRNPs [RNA processing and modification]

Probab=92.63  E-value=0.06  Score=47.26  Aligned_cols=14  Identities=21%  Similarity=0.349  Sum_probs=10.2

Q ss_pred             hhhcCCcccccccC
Q 014129          369 LQNQLDLEDSHEQS  382 (430)
Q Consensus       369 lq~qldle~~~~~~  382 (430)
                      +++.++++.-|+.+
T Consensus        69 lpD~l~ld~Llvd~   82 (109)
T KOG3428|consen   69 LPDSLNLDTLLVDD   82 (109)
T ss_pred             ccCCcCcceeeeeh
Confidence            56778888877655

>KOG3683 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.94  E-value=0.11  Score=55.62  Aligned_cols=64  Identities=30%  Similarity=0.353  Sum_probs=54.3

Q ss_pred             CceEEEEEecCceEEEEeecccCCCCCCCCCCC---ceEEEeCCceEeeeEEEEeCCcEEEec-ccchh
Q 014129          107 NRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPG---TKVRLENKVPVHSGIVCLNPNVVTVLG-GVVAS  171 (430)
Q Consensus       107 ~RmLKL~LTDG~~~i~AiE~~pI~~Lsl~tpPG---tKIlLkg~v~vrrGvLLL~p~Nv~VLG-G~Ve~  171 (430)
                      .+++...+-+|.+..++++.+.|+.+.+..+||   ||+++.+ +...+|.++|.+.+++.|| |.|..
T Consensus       154 ~~~I~~~s~~~~t~~~~~~~~~~p~~~~s~~~g~~~tk~~~~~-~~~~rgr~~ld~~~~~~l~~~~v~k  221 (460)
T KOG3683|consen  154 CRLILKDSNSGETKTFAFEPESIPQSPLSEPPGERRTKALVPG-PLEGRGRLILDKNNLKKLGEGRVEK  221 (460)
T ss_pred             HHHHHHHhccCccceeecccccCCCcccCCCCCccccccccCC-ccccccceeccCCCccccccccccc
Confidence            366666777778999999999999999999999   9999988 6778888999999999998 56544

>cd04488 RecG_wedge_OBF RecG_wedge_OBF: A subfamily of OB folds corresponding to the OB fold found in the N-terminal (wedge) domain of Escherichia coli RecG

Probab=88.02  E-value=1.1  Score=33.86  Aligned_cols=53  Identities=30%  Similarity=0.456  Sum_probs=40.5

Q ss_pred             CceEEEEEecCceEEEEeecccCCCCCCCCCCCceEEEeCCceEeeeEEEEeC
Q 014129          107 NRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIVCLNP  159 (430)
Q Consensus       107 ~RmLKL~LTDG~~~i~AiE~~pI~~Lsl~tpPGtKIlLkg~v~vrrGvLLL~p  159 (430)
                      +.+|++.|+|+...|.++=+..-+.+.-.+.+|.++.|.|.+...+|.+-|..
T Consensus        17 ~~~~~~~~~D~~g~i~~~~F~~~~~~~~~~~~G~~~~v~Gkv~~~~~~~qi~~   69 (75)
T cd04488          17 RRRLKVTLSDGTGTLTLVFFNFQPYLKKQLPPGTRVRVSGKVKRFRGGLQIVH   69 (75)
T ss_pred             ccEEEEEEEcCCCEEEEEEECCCHHHHhcCCCCCEEEEEEEEeecCCeeEEeC
Confidence            45899999999988888777644445445899999999998877777664433

RecG is a branched-DNA-specific helicase, which catalyzes the interconversion of a DNA replication fork to a four-stranded (Holliday) junction in vivo and in vitro. This interconversion provides a route to repair stalled forks. The RecG monomer contains three domains. The N-terminal domain is named for its wedge structure, and may provide the specificity of RecG for binding branched-DNA structures. During the reversal of fork to Holliday junction, the wedge domain is fixed at the junction of the fork where the leading and lagging strand duplex arms meet, and is thought to promote the unwinding of the nascent leading and lagging strands. In order to form the Holliday junction, these nascent strands would be annealed, and the parental strands reannealed. The wedge domain may also be a processivity factor of RecG on these branched cha

>PF14619 SnAC: Snf2-ATP coupling, chromatin remodelling complex

Probab=84.33  E-value=0.54  Score=38.33  Aligned_cols=24  Identities=29%  Similarity=0.473  Sum_probs=22.2

Q ss_pred             cCCCCCCCCCCCCCCCCCccCHHHHH
Q 014129          317 RHSRGRRYRGKGKEEEPAVFTLEEWE  342 (430)
Q Consensus       317 ~~~rg~~~rg~~~~ed~~~~t~~eWe  342 (430)
                      -+|||.|.|+.-.|+|  .||++||+
T Consensus        51 ~~grG~R~RK~V~Y~D--~LTEeQwL   74 (74)
T PF14619_consen   51 EYGRGKRERKEVSYDD--GLTEEQWL   74 (74)
T ss_pred             hcccccccccccccCC--CCCHHHhC
Confidence            4799999999999999  99999995

>PF04057 Rep-A_N: Replication factor-A protein 1, N-terminal domain; InterPro: IPR007199 Replication factor-a protein 1 (RPA1) forms a multiprotein complex with RPA2 and RPA3 that binds single-stranded DNA and functions in the recognition of DNA damage for nucleotide excision repair

Probab=83.22  E-value=2  Score=36.92  Aligned_cols=59  Identities=27%  Similarity=0.436  Sum_probs=40.2

Q ss_pred             ceEEEEeeeeecccchhhhhccCCCCCceEEEEEecCceEEEEeecccCCCCCC--CCCCCceEEEeC
Q 014129           81 PIVLQVASVRDISRSSIEEFSGNPGSNRLLKLVLTDGHIEITAIEYSHIPSIPY--DVVPGTKVRLEN  146 (430)
Q Consensus        81 p~VLQI~~I~DIs~s~~~q~~~~~~~~RmLKL~LTDG~~~i~AiE~~pI~~Lsl--~tpPGtKIlLkg  146 (430)
                      .-||||..++-|...       ......-+||.|+||...+.||--..+..+-.  .+.-|+=|.|+.
T Consensus        18 ~pvlQVl~~k~i~~~-------~~~~~~RyR~~lSDG~~~~~amLatqln~lv~~g~l~~~siirl~~   78 (101)
T PF04057_consen   18 NPVLQVLNIKKINSK-------QGGGSDRYRLVLSDGVHSIQAMLATQLNHLVESGELQKGSIIRLKQ   78 (101)
T ss_dssp             -TEEEEEEEEEE-----------TTS--EEEEEEESSSEEEEEEESGGGHHHHHTTSSSTT-EEEEEE
T ss_pred             CcEEEEEeeEEccCC-------CCCCCceEEEEEEChHHHHHHHhHHHhHHHHhcCCcccCCEEEEeE
Confidence            678999999998764       12334569999999999999997766655422  377788888874

The complex binds to single-stranded DNA sequences participating in DNA replication in addition to those mediating transcriptional repression and activation, and stimulates the activity of cognate strand exchange protein Sep1. It cooperates with T-AG and DNA topoisomerase I to unwind template DNA containing the Simian Virus 40 origin of replication [].; GO: 0003677 DNA binding, 0006260 DNA replication, 0005634 nucleus; PDB: 1EWI_A 2B3G_A 2B29_A.

>cd04492 YhaM_OBF_like YhaM_OBF_like: A subfamily of OB folds similar to that found in Bacillus subtilis YhaM and Staphylococcus aureus cmp-binding factor-1 (SaCBF1)

Probab=82.97  E-value=3.7  Score=32.03  Aligned_cols=50  Identities=24%  Similarity=0.242  Sum_probs=37.7

Q ss_pred             CCceEEEEEecCceEEEEeecccCCCCCCCCCCCceEEEeCCceEeeeEE
Q 014129          106 SNRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVPVHSGIV  155 (430)
Q Consensus       106 ~~RmLKL~LTDG~~~i~AiE~~pI~~Lsl~tpPGtKIlLkg~v~vrrGvL  155 (430)
                      .++++.+.|.|+.-.+.++=|...+.+...+.+|..|+|.|.+...+|-+
T Consensus        17 g~~~~~~~l~D~tg~i~~~~f~~~~~~~~~l~~g~~v~v~G~v~~~~~~~   66 (83)
T cd04492          17 GKPYLALTLQDKTGEIEAKLWDASEEDEEKFKPGDIVHVKGRVEEYRGRL   66 (83)
T ss_pred             CCcEEEEEEEcCCCeEEEEEcCCChhhHhhCCCCCEEEEEEEEEEeCCce
Confidence            34799999999998888777764545544589999999998776555533

Both these proteins are 3'-to-5'exoribonucleases. YhaM requires Mn2+ or Co2+ for activity and is inactive in the presence of Mg2+. YhaM also has a Mn2+ dependent 3'-to-5'single-stranded DNA exonuclease activity. SaCBF is also a double-stranded DNA binding protein, binding specifically to cmp, the replication enhancer found in S. aureus plasmid pT181. Proteins in this group combine an N-terminal OB fold with a C-terminal HD domain. The HD domain is found in metal-dependent phosphohydrolases.

>cd04487 RecJ_OBF2_like RecJ_OBF2_like: A subfamily of OB folds corresponding to the second OB fold (OBF2) of archaeal-specific proteins with similarity to eubacterial RecJ

Probab=82.90  E-value=4.5  Score=32.76  Aligned_cols=56  Identities=20%  Similarity=0.205  Sum_probs=43.9

Q ss_pred             EEEEEecCceEEEEeecccCC-CCCCCCCCCceEEEeCCceEeeeEEEEeCCcEEEe
Q 014129          110 LKLVLTDGHIEITAIEYSHIP-SIPYDVVPGTKVRLENKVPVHSGIVCLNPNVVTVL  165 (430)
Q Consensus       110 LKL~LTDG~~~i~AiE~~pI~-~Lsl~tpPGtKIlLkg~v~vrrGvLLL~p~Nv~VL  165 (430)
                      +-|+|.|+...+.++=|++.. .+...+.+|.+|.+.|.+.+.+|-+-|.-..++||
T Consensus        17 vyfsLkD~~a~i~cv~f~~~~~~~~~~l~~Gd~V~v~G~v~~~~G~~ql~v~~i~~~   73 (73)
T cd04487          17 TIFTLRDETGTVWAAAFEEAGVRAYPEVEVGDIVRVTGEVEPRDGQLQIEVESLEVL   73 (73)
T ss_pred             EEEEEEcCCEEEEEEEEchhccCCcCCCCCCCEEEEEEEEecCCeEEEEEEeeEEEC
Confidence            678889988666666666543 35556899999999999888999998888777775

RecJ is an ssDNA-specific exonuclease. Although the overall sequence similarity of these proteins to eubacterial RecJ proteins is marginal, they appear to carry motifs, which have been shown to be essential for nuclease function in Escherichia coli RecJ. In addition to this OB fold, most proteins in this subfamily contain: i) an N-terminal OB fold belonging to a different domain family (the ribosomal S1-like RNA-binding family); and ii) a domain, C-terminal to OBF2, characteristic of DHH family proteins. DHH family proteins include E. coli RecJ, and are predicted to have a phosphoesterase function.

>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands

Probab=82.34  E-value=1  Score=34.53  Aligned_cols=59  Identities=20%  Similarity=0.276  Sum_probs=44.8

Q ss_pred             CceEEEEEecCceEEEEeecc-cCCCCCCCCCCCceEEEeCCceEeeeE-EEEeCCcEEEe
Q 014129          107 NRLLKLVLTDGHIEITAIEYS-HIPSIPYDVVPGTKVRLENKVPVHSGI-VCLNPNVVTVL  165 (430)
Q Consensus       107 ~RmLKL~LTDG~~~i~AiE~~-pI~~Lsl~tpPGtKIlLkg~v~vrrGv-LLL~p~Nv~VL  165 (430)
                      ..++.++|+||.-.+.++=+. ....+...+.+|+-|.+.|.+...++- +-|...++++|
T Consensus        15 ~~~~~~~l~D~tg~i~~~~~~~~~~~~~~~l~~g~~v~v~G~v~~~~~~~~~l~~~~i~~l   75 (75)
T PF01336_consen   15 GKIVFFTLEDGTGSIQVVFFNEEYERFREKLKEGDIVRVRGKVKRYNGGELELIVPKIEIL   75 (75)
T ss_dssp             TTEEEEEEEETTEEEEEEEETHHHHHHHHTS-TTSEEEEEEEEEEETTSSEEEEEEEEEEE
T ss_pred             CCEEEEEEEECCccEEEEEccHHhhHHhhcCCCCeEEEEEEEEEEECCccEEEEECEEEEC
Confidence            478999999999887777666 444444468999999999988888776 77777777665

The OB-fold is a five/six-stranded closed beta-barrel formed by 70-80 amino acid residues. The strands are connected by loops of varying length which form the functional appendages of the protein. The majority of OB-fold proteins use the same face for ligand binding or as an active site. Different OB-fold proteins use this 'fold-related binding face' to, variously, bind oligosaccharides, oligonucleotides, proteins, metal ions and catalytic substrates. This entry contains OB-fold domains that bind to nucleic acids []. It includes the anti-codon binding domain of lysyl, aspartyl, and asparaginyl-tRNA synthetases (See IPR004364 from INTERPRO). Aminoacyl-tRNA synthetases catalyse the addition of an amino acid to the appropriate tRNA molecule 6.1.1 from EC. This domain is found in RecG helicase involved in DNA repair. Replication factor A is a heterotrimeric complex, that contains a subunit in this family [, ]. This domain is also found at the C terminus of bacterial DNA polymerase III alpha chain.; GO: 0003676 nucleic acid binding; PDB: 1BBU_A 1KRS_A 1BBW_A 1KRT_A 1EQR_B 1IL2_B 1C0A_A 3KFU_A 1EOV_A 1ASY_A ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	430
3nbi_A	216	Crystal Structure Of Human Rmi1 N-Terminus Length =		7e-10

>pdb|3NBI|A Chain A, Crystal Structure Of Human Rmi1 N-Terminus Length = 216

Iteration: 1
 Score = 62.0 bits (149), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 69/147 (46%), Gaps = 24/147 (16%)
Query: 54  ELLNTDLKSIGGKSLPDPTRKF--SHIQGPIVLQVASVRDISR---SSIEEFSGNPGSN- 107
           + L TDL+ +    LPD   +     + G   LQ+ S+ D+S+   S I++  G   +N 
Sbjct: 58  QWLLTDLRDLEHPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTND 117
Query: 108 ------------------RLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGTKVRLENKVP 149
                             R L L LTDG ++I   EY  IP +  D+ PGTK+ +   + 
Sbjct: 118 LVTAEAQVTPKPWEAKPSRXLXLQLTDGIVQIQGXEYQPIPILHSDLPPGTKILIYGNIS 177
Query: 150 VHSGIVCLNPNVVTVLGGVVASLHEEW 176
              G++ L P  V VLGG V +L EE+
Sbjct: 178 FRLGVLLLKPENVKVLGGEVDALLEEY 204

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	430
3nbi_A	216	RECQ-mediated genome instability protein 1; OB-fol	100.0

>3nbi_A RECQ-mediated genome instability protein 1; OB-fold, RPA-like, protein binding; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.6e-43  Score=335.67  Aligned_cols=177  Identities=26%  Similarity=0.361  Sum_probs=152.3

Q ss_pred             HHHHHHHHHH-CCceeCchHHHHHHHH-HHhhcCCCC-ChhHHHHHHHHHHHHhhhhhcCCCCCCCcc--ccccccCCce
Q 014129            8 TEAVIKALRS-RGWCFGNIQEVTAIIA-INSALIDDK-DPRKVADSTESELLNTDLKSIGGKSLPDPT--RKFSHIQGPI   82 (430)
Q Consensus         8 ~~~l~~~L~~-~Gw~L~~~eWLk~Cv~-i~~~~~~~~-~~~~~~~~V~~qlL~sDLr~ig~~~LP~~~--~k~~~L~Gp~   82 (430)
                      +.+|...|.+ .+.+|++ +||++||+ +++..+... +...+.+.|+.+||++||++++.++||+++  .+..+|+||+
T Consensus        10 ~~~v~~~l~~~~~i~v~~-~WL~~ci~~l~~~~~~~~l~~~~l~~~v~~q~L~sDL~~~~~~~LP~~i~~~~~~~L~Gp~   88 (216)
T 3nbi_A           10 ALRAETWLLAAWHVKVPP-MWLEACINWIQEENNNVNLSQAQMNKQVFEQWLLTDLRDLEHPLLPDGILEIPKGELNGFY   88 (216)
T ss_dssp             HHHHHHHHHHHHCCCCCH-HHHHHHHHHHHHHHTCSCCCHHHHHHHHHHHHHTSCHHHHCCCCSCTTTTTCSEEEEEEEE
T ss_pred             HHHHHHHHHhCCCCCCCH-HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhhHHHhCCCCCCchhhhCccceecccE
Confidence            4556666666 5777775 89999999 777766533 568999999999999999999999999998  4567899999


Q ss_pred             EEEEeeeeecccchhhhhcc----------------------CCCCCceEEEEEecCceEEEEeecccCCCCCCCCCCCc
Q 014129           83 VLQVASVRDISRSSIEEFSG----------------------NPGSNRLLKLVLTDGHIEITAIEYSHIPSIPYDVVPGT  140 (430)
Q Consensus        83 VLQI~~I~DIs~s~~~q~~~----------------------~~~~~RmLKL~LTDG~~~i~AiE~~pI~~Lsl~tpPGt  140 (430)
                      ||||++|+|||.|+|+|+..                      ..+++|||||+||||+++|+||||+||++|+++++|||
T Consensus        89 vlQV~~i~DIs~s~~sQl~~~rg~~~~nde~~~~~q~~~~~~~~~~~rmLkL~LtDG~~~i~AiE~~~i~~l~~~~~pGt  168 (216)
T 3nbi_A           89 ALQINSLVDVSQPAYSQIQKLRGKNTTNDLVTAEAQVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQPIPILHSDLPPGT  168 (216)
T ss_dssp             EEEEEEEEESHHHHHHHHHHHHHC----------CCCCCCCCCCCCCCCEEEEEESSSCEEEEEECSCCTTCCTTCCTTC
T ss_pred             EEEEEeEEEeccchHHHHHHHhCCCCCcccccccccccccccCCCCceEEEEEEcCCCeEEEEEEcccchhcccCCCCCc
Confidence            99999999999999986421                      23568999999999999999999999999999999999


Q ss_pred             eEEEeCCceEeeeEEEEeCCcEEEecccchhHHHHHhhhhhhhcc
Q 014129          141 KVRLENKVPVHSGIVCLNPNVVTVLGGVVASLHEEWQMNRKYSVF  185 (430)
Q Consensus       141 KIlLkg~v~vrrGvLLL~p~Nv~VLGG~Ve~L~e~W~~~r~l~~~  185 (430)
                      ||+|++++.|+||||||+|+||+||||+|++|+++|+++|.|++.
T Consensus       169 Kill~~~~~~~~G~llL~~~n~~vLGG~V~~L~~~w~~~r~l~r~  213 (216)
T 3nbi_A          169 KILIYGNISFRLGVLLLKPENVKVLGGEVDALLEEYAQEKVLARL  213 (216)
T ss_dssp             EEEEEEEEEEETTEEEECGGGEEEEECCCHHHHHHHTTC------
T ss_pred             eEEEeCCcEEEeeEEEecCCCEEEECcCcHHHHHHHHHHHHHHHH
Confidence            999998899999999999999999999999999999999988754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00