Citrus Sinensis ID: 014167

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------43
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGDNDNDHMDVG
cccccEEEEEEcccccccccccccccccHHHHHHHHHHHHccccccccccccccccHHHHHccccHHHHHHHcccccccccccHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccEEcHHHHHHHHHHHcccEEEEEEccccccccccccccccccEEEEEccccccccccccccccccccccccccEEcccccccccHHHHHHHHHHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHccccEEEEccccccccHHHHHHHHHHHHHccccccccccccHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
cccccEEEEEEcccccccccccccccccHHHHHHHHHHHHHcHHccEEEEccccccHHHHHHHccHHHHHHHHHccHccHHHHHHHHHHccccccccccccHHHHHEEcccccHHHHHHHHcccccEEEEccccccccEccEcEccEcccHHHHHHHHHHHHcccEEEEEccccccHHHHHHHcccccEEEEEEEEcccccccccccccccccHHHcccEEEEEEcccccHHHHHHHHHHHHHHHHccccccEEEEEcccccEcccccccccEcHHHHHHHHHHHHHHHcccEEEccccccHHHHHHHHHHHHHHHccccccccccccHHHHHcccccEEccccccccccccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHccccccccccccccccccccccc
mrskdkisyfydgdvgsvyfgpnhpmkphrlcmtHHLVLSYdlhkkmeiyrphkaypvelaqfhsaDYVEFlhritpdtqHLFRQELtkynlgedcpvFENLFEFCQIYAGGTIDAARRLNNQLCDIAInwagglhhakkceasgfcyinDLVLGILELLKYHARVLYIDidvhhgdgveeafYFTDRVMtvsfhkfgdlffpgtgdvkeigeregkfyainvplkdgiddtsFTRLFKTIISKVVETYAPGAIVLQCgadslagdrlgcfnlsidgHAECVRFVKKfnlpllvtggggytkenvARCWTVETGilldtelpneipeneyikyfapecslripnghienlnskSYLSTIKMQVLENLRsiqhapsvqmqevppdfyipefdedeqnpdermdqhtqdkqiqrddefyegdndndhmdvg
mrskdkisyfydgdvgSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAInvplkdgiddtsFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLvtggggytkenvARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQhtqdkqiqrddefyegdndndhmdvg
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGDNDNDHMDVG
******ISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI***********************************************************
****DKI*YFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIP*G****LN*KSYLSTIKMQVLENLRSIQHAPSVQMQEVP***********************************************
MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDE***************IQRDDEFYEGDNDNDHMDVG
***KDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPP**********************************************
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MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGDNDNDHMDVG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query429 2.2.26 [Sep-21-2011]
Q8H0W2426 Histone deacetylase 9 OS= yes no 0.988 0.995 0.877 0.0
P56517480 Histone deacetylase 1 OS= yes no 0.981 0.877 0.595 1e-155
O42227480 Probable histone deacetyl N/A no 0.981 0.877 0.576 1e-152
Q4QQW4482 Histone deacetylase 1 OS= yes no 0.888 0.790 0.623 1e-152
O09106482 Histone deacetylase 1 OS= yes no 0.888 0.790 0.623 1e-152
Q32PJ8482 Histone deacetylase 1 OS= yes no 0.888 0.790 0.623 1e-152
Q5RAG0482 Histone deacetylase 1 OS= yes no 0.888 0.790 0.620 1e-152
Q13547482 Histone deacetylase 1 OS= yes no 0.888 0.790 0.620 1e-152
Q55FN5495 Type-1 histone deacetylas yes no 0.979 0.848 0.586 1e-151
P56518 576 Histone deacetylase 1 OS= no no 0.981 0.730 0.596 1e-150
>sp|Q8H0W2|HDA9_ARATH Histone deacetylase 9 OS=Arabidopsis thaliana GN=HDA9 PE=2 SV=1 Back     alignment and function desciption
 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/424 (87%), Positives = 403/424 (95%)

Query: 1   MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL 60
           MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHL+L+Y LH KME+YRPHKAYP+E+
Sbjct: 1   MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEM 60

Query: 61  AQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120
           AQFHS DYVEFL RI P+ Q+LF  E+ +YNLGEDCPVFE+LFEFCQ+YAGGTIDAARRL
Sbjct: 61  AQFHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRL 120

Query: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180
           NN+LCDIAINWAGGLHHAKKC+ASGFCYINDLVLGILELLK+H RVLYIDIDVHHGDGVE
Sbjct: 121 NNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVE 180

Query: 181 EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT 240
           EAFYFTDRVMTVSFHKFGD FFPGTGDVKEIGEREGKFYAINVPLKDGIDD+SF RLF+T
Sbjct: 181 EAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFRT 240

Query: 241 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 300
           IISKVVE Y PGAIVLQCGADSLA DRLGCFNLSIDGHAECV+FVKKFNLPLLVTGGGGY
Sbjct: 241 IISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNLPLLVTGGGGY 300

Query: 301 TKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIK 360
           TKENVARCWTVETGILLDTELPNEIPEN+YIKYFAP+ SL+IP GHIENLN+KSY+S+IK
Sbjct: 301 TKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHIENLNTKSYISSIK 360

Query: 361 MQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGD 420
           +Q+LENLR IQHAPSVQMQEVPPDFYIP+FDEDEQNPD R DQ ++DKQIQRDDE+++GD
Sbjct: 361 VQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRADQRSRDKQIQRDDEYFDGD 420

Query: 421 NDND 424
           NDND
Sbjct: 421 NDND 424
Responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. Histone deacetylases act via the formation of large multiprotein complexes.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 5EC: .EC: 1EC: .EC: 9EC: 8
>sp|P56517|HDAC1_CHICK Histone deacetylase 1 OS=Gallus gallus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|O42227|HDA1B_XENLA Probable histone deacetylase 1-B OS=Xenopus laevis GN=hdac1-b PE=1 SV=1 Back     alignment and function description
>sp|Q4QQW4|HDAC1_RAT Histone deacetylase 1 OS=Rattus norvegicus GN=Hdac1 PE=2 SV=1 Back     alignment and function description
>sp|O09106|HDAC1_MOUSE Histone deacetylase 1 OS=Mus musculus GN=Hdac1 PE=1 SV=1 Back     alignment and function description
>sp|Q32PJ8|HDAC1_BOVIN Histone deacetylase 1 OS=Bos taurus GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q5RAG0|HDAC1_PONAB Histone deacetylase 1 OS=Pongo abelii GN=HDAC1 PE=2 SV=1 Back     alignment and function description
>sp|Q13547|HDAC1_HUMAN Histone deacetylase 1 OS=Homo sapiens GN=HDAC1 PE=1 SV=1 Back     alignment and function description
>sp|Q55FN5|HDA11_DICDI Type-1 histone deacetylase 1 OS=Dictyostelium discoideum GN=hdaA PE=2 SV=1 Back     alignment and function description
>sp|P56518|HDAC1_STRPU Histone deacetylase 1 OS=Strongylocentrotus purpuratus GN=HDAC1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
356539296429 PREDICTED: histone deacetylase 9-like [G 1.0 1.0 0.937 0.0
356542722429 PREDICTED: histone deacetylase 9-like [G 1.0 1.0 0.927 0.0
224061587429 histone deacetylase [Populus trichocarpa 0.995 0.995 0.934 0.0
255639849429 unknown [Glycine max] 1.0 1.0 0.925 0.0
225453264430 PREDICTED: histone deacetylase 9 [Vitis 0.976 0.974 0.940 0.0
359479384458 PREDICTED: histone deacetylase 9-like [V 0.976 0.914 0.940 0.0
147787408430 hypothetical protein VITISV_020659 [Viti 0.976 0.974 0.937 0.0
297734830430 unnamed protein product [Vitis vinifera] 0.976 0.974 0.940 0.0
255576367429 histone deacetylase 1, 2 ,3, putative [R 0.997 0.997 0.918 0.0
357471905430 Histone deacetylase [Medicago truncatula 0.997 0.995 0.920 0.0
>gi|356539296|ref|XP_003538135.1| PREDICTED: histone deacetylase 9-like [Glycine max] Back     alignment and taxonomy information
 Score =  845 bits (2184), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 402/429 (93%), Positives = 416/429 (96%)

Query: 1   MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL 60
           M SKDKI+YFYDGDVGSVYFG  HPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL
Sbjct: 1   MPSKDKIAYFYDGDVGSVYFGAKHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL 60

Query: 61  AQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120
           AQFHSADYVEFL+RITPDTQHLF +ELTKYNLGEDCPVF+NLFEFCQIYAGGTIDAARRL
Sbjct: 61  AQFHSADYVEFLNRITPDTQHLFLKELTKYNLGEDCPVFDNLFEFCQIYAGGTIDAARRL 120

Query: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180
           NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE
Sbjct: 121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180

Query: 181 EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT 240
           EAFYFTDRVMTVSFHK+GDLFFPGTGD KEIGEREGKFYAINVPLKDGIDD+SFTRLFKT
Sbjct: 181 EAFYFTDRVMTVSFHKYGDLFFPGTGDAKEIGEREGKFYAINVPLKDGIDDSSFTRLFKT 240

Query: 241 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 300
           IISKV+ETY PGAIVLQCGADSLAGDRLGCFNLSIDGHAECV FVK+FNLPLLVTGGGGY
Sbjct: 241 IISKVLETYQPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVSFVKRFNLPLLVTGGGGY 300

Query: 301 TKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIK 360
           TKENVARCWTVETG+LLDTELPNEIPEN+YIKYFAPE SL+IPNG IENLNSKSYLSTIK
Sbjct: 301 TKENVARCWTVETGVLLDTELPNEIPENDYIKYFAPEFSLKIPNGQIENLNSKSYLSTIK 360

Query: 361 MQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGD 420
           MQVLENLR IQHAPSVQMQEVPPDFYIPEFDEDEQNPDER+DQHTQDK IQRDDE+Y+GD
Sbjct: 361 MQVLENLRCIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERLDQHTQDKHIQRDDEYYDGD 420

Query: 421 NDNDHMDVG 429
           NDND MDV 
Sbjct: 421 NDNDQMDVS 429

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356542722|ref|XP_003539814.1| PREDICTED: histone deacetylase 9-like [Glycine max] Back     alignment and taxonomy information
>gi|224061587|ref|XP_002300554.1| histone deacetylase [Populus trichocarpa] gi|222847812|gb|EEE85359.1| histone deacetylase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255639849|gb|ACU20217.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225453264|ref|XP_002266492.1| PREDICTED: histone deacetylase 9 [Vitis vinifera] gi|297734674|emb|CBI16725.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359479384|ref|XP_002270071.2| PREDICTED: histone deacetylase 9-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147787408|emb|CAN77816.1| hypothetical protein VITISV_020659 [Vitis vinifera] Back     alignment and taxonomy information
>gi|297734830|emb|CBI17064.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255576367|ref|XP_002529076.1| histone deacetylase 1, 2 ,3, putative [Ricinus communis] gi|223531488|gb|EEF33320.1| histone deacetylase 1, 2 ,3, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357471905|ref|XP_003606237.1| Histone deacetylase [Medicago truncatula] gi|355507292|gb|AES88434.1| Histone deacetylase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query429
TAIR|locus:2098115426 HDA9 "histone deacetylase 9" [ 0.988 0.995 0.877 4.2e-214
UNIPROTKB|Q32PJ8482 HDAC1 "Histone deacetylase 1" 0.979 0.871 0.599 6.5e-151
MGI|MGI:108086482 Hdac1 "histone deacetylase 1" 0.979 0.871 0.599 8.3e-151
RGD|619975482 Hdac1l "histone deacetylase 1- 0.979 0.871 0.599 8.3e-151
UNIPROTKB|Q13547482 HDAC1 "Histone deacetylase 1" 0.979 0.871 0.594 7.4e-150
UNIPROTKB|E2R692487 HDAC1 "Uncharacterized protein 0.979 0.862 0.595 7.4e-150
UNIPROTKB|F6X8F5483 HDAC1 "Histone deacetylase" [C 0.979 0.869 0.595 7.4e-150
UNIPROTKB|J9NUI0489 HDAC1 "Histone deacetylase" [C 0.979 0.858 0.595 7.4e-150
UNIPROTKB|P56517480 HDAC1 "Histone deacetylase 1" 0.981 0.877 0.595 3.8e-149
UNIPROTKB|I3LG31489 LOC100622482 "Histone deacetyl 0.972 0.852 0.596 1.2e-147
TAIR|locus:2098115 HDA9 "histone deacetylase 9" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 2069 (733.4 bits), Expect = 4.2e-214, P = 4.2e-214
 Identities = 372/424 (87%), Positives = 403/424 (95%)

Query:     1 MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVEL 60
             MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHL+L+Y LH KME+YRPHKAYP+E+
Sbjct:     1 MRSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLILAYGLHSKMEVYRPHKAYPIEM 60

Query:    61 AQFHSADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRL 120
             AQFHS DYVEFL RI P+ Q+LF  E+ +YNLGEDCPVFE+LFEFCQ+YAGGTIDAARRL
Sbjct:    61 AQFHSPDYVEFLQRINPENQNLFPNEMARYNLGEDCPVFEDLFEFCQLYAGGTIDAARRL 120

Query:   121 NNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVE 180
             NN+LCDIAINWAGGLHHAKKC+ASGFCYINDLVLGILELLK+H RVLYIDIDVHHGDGVE
Sbjct:   121 NNKLCDIAINWAGGLHHAKKCDASGFCYINDLVLGILELLKHHPRVLYIDIDVHHGDGVE 180

Query:   181 EAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKT 240
             EAFYFTDRVMTVSFHKFGD FFPGTGDVKEIGEREGKFYAINVPLKDGIDD+SF RLF+T
Sbjct:   181 EAFYFTDRVMTVSFHKFGDKFFPGTGDVKEIGEREGKFYAINVPLKDGIDDSSFNRLFRT 240

Query:   241 IISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGY 300
             IISKVVE Y PGAIVLQCGADSLA DRLGCFNLSIDGHAECV+FVKKFNLPLLVTGGGGY
Sbjct:   241 IISKVVEIYQPGAIVLQCGADSLARDRLGCFNLSIDGHAECVKFVKKFNLPLLVTGGGGY 300

Query:   301 TKENVARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIK 360
             TKENVARCWTVETGILLDTELPNEIPEN+YIKYFAP+ SL+IP GHIENLN+KSY+S+IK
Sbjct:   301 TKENVARCWTVETGILLDTELPNEIPENDYIKYFAPDFSLKIPGGHIENLNTKSYISSIK 360

Query:   361 MQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERMDQHTQDKQIQRDDEFYEGD 420
             +Q+LENLR IQHAPSVQMQEVPPDFYIP+FDEDEQNPD R DQ ++DKQIQRDDE+++GD
Sbjct:   361 VQILENLRYIQHAPSVQMQEVPPDFYIPDFDEDEQNPDVRADQRSRDKQIQRDDEYFDGD 420

Query:   421 NDND 424
             NDND
Sbjct:   421 NDND 424
GO:0004407 "histone deacetylase activity" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM;ISS
GO:0016575 "histone deacetylation" evidence=IEA;ISS
UNIPROTKB|Q32PJ8 HDAC1 "Histone deacetylase 1" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:108086 Hdac1 "histone deacetylase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|619975 Hdac1l "histone deacetylase 1-like" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q13547 HDAC1 "Histone deacetylase 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R692 HDAC1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|F6X8F5 HDAC1 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9NUI0 HDAC1 "Histone deacetylase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P56517 HDAC1 "Histone deacetylase 1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|I3LG31 LOC100622482 "Histone deacetylase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q94517HDAC1_DROME3, ., 5, ., 1, ., 9, 80.57440.98130.8080yesno
Q8NW34ACUC_STAAWNo assigned EC number0.30870.86010.9485yesno
Q8H0W2HDA9_ARATH3, ., 5, ., 1, ., 9, 80.87730.98830.9953yesno
O42227HDA1B_XENLA3, ., 5, ., 1, ., 9, 80.57680.98130.8770N/Ano
Q6IRL9HDAC3_XENLA3, ., 5, ., 1, ., 9, 80.57750.96960.9719N/Ano
O17695HDA1_CAEEL3, ., 5, ., 1, ., 9, 80.55290.97900.9110yesno
O59702CLR6_SCHPO3, ., 5, ., 1, ., 9, 80.55860.93240.9876yesno
Q91695HDA1A_XENLA3, ., 5, ., 1, ., 9, 80.57910.98130.8770N/Ano
Q4QQW4HDAC1_RAT3, ., 5, ., 1, ., 9, 80.62300.88810.7904yesno
Q13547HDAC1_HUMAN3, ., 5, ., 1, ., 9, 80.62040.88810.7904yesno
O09106HDAC1_MOUSE3, ., 5, ., 1, ., 9, 80.62300.88810.7904yesno
Q5RAG0HDAC1_PONAB3, ., 5, ., 1, ., 9, 80.62040.88810.7904yesno
Q5HF39ACUC_STAACNo assigned EC number0.30870.86010.9485yesno
Q4SFA0HDAC3_TETNG3, ., 5, ., 1, ., 9, 80.57950.97430.9766N/Ano
Q32PJ8HDAC1_BOVIN3, ., 5, ., 1, ., 9, 80.62300.88810.7904yesno
Q6G8J2ACUC_STAASNo assigned EC number0.30870.86010.9485yesno
Q6GFX3ACUC_STAARNo assigned EC number0.30870.86010.9485yesno
P32561RPD3_YEAST3, ., 5, ., 1, ., 9, 80.53470.96270.9538yesno
P56517HDAC1_CHICK3, ., 5, ., 1, ., 9, 80.59570.98130.8770yesno
Q55FN5HDA11_DICDI3, ., 5, ., 1, ., 9, 80.58660.97900.8484yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.5.1.980.994
3rd Layer3.5.10.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
cd10005381 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) 0.0
cd09991306 cd09991, HDAC_classI, Class I histone deacetylases 0.0
PTZ00063436 PTZ00063, PTZ00063, histone deacetylase; Provision 0.0
cd10004375 cd10004, RPD3-like, reduced potassium dependency-3 0.0
cd10010371 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) 0.0
cd10011366 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) 1e-176
cd11598311 cd11598, HDAC_Hos2, Class I histone deacetylases i 1e-171
cd10000364 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) 1e-139
COG0123340 COG0123, AcuC, Deacetylases, including yeast histo 1e-109
cd09994313 cd09994, HDAC_AcuC_like, Class I histone deacetyla 1e-109
pfam00850300 pfam00850, Hist_deacetyl, Histone deacetylase doma 1e-106
cd11680294 cd11680, HDAC_Hos1, Class I histone deacetylases H 5e-95
PTZ00346429 PTZ00346, PTZ00346, histone deacetylase; Provision 3e-94
cd09301279 cd09301, HDAC, Histone deacetylase (HDAC) classes 2e-84
cd09993275 cd09993, HDAC_classIV, Histone deacetylase class I 5e-45
cd09992291 cd09992, HDAC_classII, Histone deacetylases and hi 2e-42
cd10001298 cd10001, HDAC_classII_APAH, Histone deacetylase cl 4e-39
cd09996359 cd09996, HDAC_classII_1, Histone deacetylases and 2e-30
cd10002336 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, 3e-28
cd11600313 cd11600, HDAC_Clr3, Class II Histone deacetylase C 1e-25
cd10003350 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 3e-23
cd09987217 cd09987, Arginase_HDAC, Arginase-like and histone- 4e-23
cd11599288 cd11599, HDAC_classII_2, Histone deacetylases and 6e-23
cd11681377 cd11681, HDAC_classIIa, Histone deacetylases, clas 4e-22
cd10006409 cd10006, HDAC4, Histone deacetylase 4 1e-21
cd10007420 cd10007, HDAC5, Histone deacetylase 5 4e-20
cd10009379 cd10009, HDAC9, Histone deacetylase 9 5e-20
cd10008378 cd10008, HDAC7, Histone deacetylase 7 3e-19
cd11683337 cd11683, HDAC10, Histone deacetylase 10 2e-15
cd11682337 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 8e-15
cd09998353 cd09998, HDAC_Hos3, Class II histone deacetylases 2e-05
>gnl|CDD|212529 cd10005, HDAC3, Histone deacetylase 3 (HDAC3) Back     alignment and domain information 
 Score =  637 bits (1644), Expect = 0.0
 Identities = 239/381 (62%), Positives = 305/381 (80%), Gaps = 3/381 (0%)

Query: 6   KISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHS 65
           +++YFYD DVG+ ++GP HPMKPHRL +TH LVL Y L+KKM++Y+P++A   ++ +FHS
Sbjct: 2   RVAYFYDPDVGNFHYGPGHPMKPHRLALTHSLVLHYGLYKKMQVYKPYRASAHDMCRFHS 61

Query: 66  ADYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLC 125
            DY++FL R+TP     F + L ++N+G+DCPVF  LF+FC +Y G +++ A +LN+++C
Sbjct: 62  EDYIDFLQRVTPQNIQGFTKSLNQFNVGDDCPVFPGLFDFCSMYTGASLEGATKLNHKIC 121

Query: 126 DIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYF 185
           DIAINW+GGLHHAKK EASGFCY+ND+V+ ILELLKYH RVLYIDID+HHGDGV+EAFY 
Sbjct: 122 DIAINWSGGLHHAKKFEASGFCYVNDIVIAILELLKYHPRVLYIDIDIHHGDGVQEAFYL 181

Query: 186 TDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKV 245
           TDRVMTVSFHK+G+ FFPGTGD+ E+G   G++Y++NVPLKDGIDD S+ +LFK +I +V
Sbjct: 182 TDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYSVNVPLKDGIDDQSYLQLFKPVIQQV 241

Query: 246 VETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENV 305
           ++ Y P  IVLQCGADSL  DRLGCFNLSI GH ECV FVK FN+PLLV GGGGYT  NV
Sbjct: 242 IDFYQPTCIVLQCGADSLGCDRLGCFNLSIKGHGECVEFVKSFNIPLLVLGGGGYTVRNV 301

Query: 306 ARCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPN--GHIENLNSKSYLSTIKMQV 363
           ARCWT ET +L+D E+ NE+P NEY +YFAP+ +L  P+    IEN NSK YL  I+  V
Sbjct: 302 ARCWTYETSLLVDEEISNELPYNEYFEYFAPDFTLH-PDVSTRIENQNSKQYLDQIRQTV 360

Query: 364 LENLRSIQHAPSVQMQEVPPD 384
            ENL+ + HAPSVQMQ+VPPD
Sbjct: 361 FENLKMLNHAPSVQMQDVPPD 381

HDAC3 is a Zn-dependent class I histone deacetylase that catalyzes hydrolysis of N(6)-acetyl-lysine residue of a histone to yield a deacetylated histone (EC 3.5.1.98). Histone acetylation/deacetylation process is important for mediation of transcriptional regulation of many genes. In order to target specific chromatin regions, HDAC3 can interact with DNA-binding proteins (transcriptional factors) either directly or after forming complexes with a number of other proteins, as observed for the SMPT/N-CoR complex which recruits human HDAC3 to specific chromatin loci and activates deacetylation. Human HDAC3 is also involved in deacetylation of non-histone substrates such as RelA, SPY and p53 factors. This protein can also down-regulate p53 function and subsequently modulate cell growth and apoptosis. This gene is therefore regarded as a potential tumor suppressor gene. HDAC3 plays a role in various physiological processes, including subcellular protein localization, cell cycle progression, cell differentiation, apoptosis and survival. HDAC3 has been found to be overexpressed in some tumors including leukemia, lung carcinoma, colon cancer and maxillary carcinoma. Thus, inhibitors precisely targeting HDAC3 (in some cases together with retinoic acid or hyperthermia) could be a therapeutic drug option. Length = 381
>gnl|CDD|212517 cd09991, HDAC_classI, Class I histone deacetylases Back     alignment and domain information
>gnl|CDD|240251 PTZ00063, PTZ00063, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212528 cd10004, RPD3-like, reduced potassium dependency-3 (RPD3)-like Back     alignment and domain information
>gnl|CDD|212534 cd10010, HDAC1, Histone deacetylase 1 (HDAC1) Back     alignment and domain information
>gnl|CDD|212535 cd10011, HDAC2, Histone deacetylase 2 (HDAC2) Back     alignment and domain information
>gnl|CDD|212540 cd11598, HDAC_Hos2, Class I histone deacetylases including ScHos2 and SpPhd1 Back     alignment and domain information
>gnl|CDD|212524 cd10000, HDAC8, Histone deacetylase 8 (HDAC8) Back     alignment and domain information
>gnl|CDD|223201 COG0123, AcuC, Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>gnl|CDD|212520 cd09994, HDAC_AcuC_like, Class I histone deacetylase AcuC (Acetoin utilization protein)-like enzymes Back     alignment and domain information
>gnl|CDD|216151 pfam00850, Hist_deacetyl, Histone deacetylase domain Back     alignment and domain information
>gnl|CDD|212543 cd11680, HDAC_Hos1, Class I histone deacetylases Hos1 and related proteins Back     alignment and domain information
>gnl|CDD|240374 PTZ00346, PTZ00346, histone deacetylase; Provisional Back     alignment and domain information
>gnl|CDD|212512 cd09301, HDAC, Histone deacetylase (HDAC) classes I, II, IV and related proteins Back     alignment and domain information
>gnl|CDD|212519 cd09993, HDAC_classIV, Histone deacetylase class IV also known as histone deacetylase 11 Back     alignment and domain information
>gnl|CDD|212518 cd09992, HDAC_classII, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212525 cd10001, HDAC_classII_APAH, Histone deacetylase class IIa Back     alignment and domain information
>gnl|CDD|212521 cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212526 cd10002, HDAC10_HDAC6-dom1, Histone deacetylase 6, domain 1 and histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212542 cd11600, HDAC_Clr3, Class II Histone deacetylase Clr3 and similar proteins Back     alignment and domain information
>gnl|CDD|212527 cd10003, HDAC6-dom2, Histone deacetylase 6, domain 2 Back     alignment and domain information
>gnl|CDD|212513 cd09987, Arginase_HDAC, Arginase-like and histone-like hydrolases Back     alignment and domain information
>gnl|CDD|212541 cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII Back     alignment and domain information
>gnl|CDD|212544 cd11681, HDAC_classIIa, Histone deacetylases, class IIa Back     alignment and domain information
>gnl|CDD|212530 cd10006, HDAC4, Histone deacetylase 4 Back     alignment and domain information
>gnl|CDD|212531 cd10007, HDAC5, Histone deacetylase 5 Back     alignment and domain information
>gnl|CDD|212533 cd10009, HDAC9, Histone deacetylase 9 Back     alignment and domain information
>gnl|CDD|212532 cd10008, HDAC7, Histone deacetylase 7 Back     alignment and domain information
>gnl|CDD|212546 cd11683, HDAC10, Histone deacetylase 10 Back     alignment and domain information
>gnl|CDD|212545 cd11682, HDAC6-dom1, Histone deacetylase 6, domain 1 Back     alignment and domain information
>gnl|CDD|212522 cd09998, HDAC_Hos3, Class II histone deacetylases Hos3 and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 429
KOG1342425 consensus Histone deacetylase complex, catalytic c 100.0
PTZ00063436 histone deacetylase; Provisional 100.0
PTZ00346429 histone deacetylase; Provisional 100.0
COG0123340 AcuC Deacetylases, including yeast histone deacety 100.0
PF00850311 Hist_deacetyl: Histone deacetylase domain; InterPr 100.0
KOG1343797 consensus Histone deacetylase complex, catalytic c 100.0
KOG1344324 consensus Predicted histone deacetylase [Chromatin 100.0
KOG1343 797 consensus Histone deacetylase complex, catalytic c 100.0
COG3914620 Spy Predicted O-linked N-acetylglucosamine transfe 85.69
>KOG1342 consensus Histone deacetylase complex, catalytic component RPD3 [Chromatin structure and dynamics] Back     alignment and domain information 
Probab=100.00  E-value=5.8e-147  Score=1086.76  Aligned_cols=422  Identities=64%  Similarity=1.170  Sum_probs=409.8

Q ss_pred             CCCCeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCchh
Q 014167            2 RSKDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQH   81 (429)
Q Consensus         2 ~~~~~v~~~y~~~~~~~~~g~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~~   81 (429)
                      .+|++|+|+|++++++|+||++|||+|+|++|+|+||.+|||.++|++++|..|+.+||++|||++||+||++++|+++.
T Consensus         4 ~~k~~V~y~yd~~vg~~~Yg~~hpmkP~R~~mth~Lv~~YgL~k~M~i~~p~~a~~~dm~~FHt~eYi~fL~~V~p~n~~   83 (425)
T KOG1342|consen    4 LIKRRVSYFYDPDVGNFHYGQGHPMKPHRIRMTHSLVLNYGLYKKMEIYRPDKASAQDMTRFHTDEYINFLQSVTPENME   83 (425)
T ss_pred             cCCceEEEEecCccccccccCCCCCCcceehhhhHHHHhcchhhceeeccCCCCCHHHHHhhchHHHHHHHhhCCccccc
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hhHhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHccCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHH
Q 014167           82 LFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLK  161 (429)
Q Consensus        82 ~~~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ll~  161 (429)
                      ....++.+||+++|||+|++||+||++++||||.||++|++++++|||||+||+|||||++||||||+|||||||++|||
T Consensus        84 ~~~~~~~~fNvg~DCPvF~gL~~fC~~~~GgSl~aa~kLn~~~~dIaINW~GGlHHAKK~eASGFCYvNDIVL~ILeLlK  163 (425)
T KOG1342|consen   84 TFNKELKQFNVGEDCPVFDGLYDYCQLYTGGSLNAAQKLNRGECDIAINWAGGLHHAKKSEASGFCYVNDIVLGILELLK  163 (425)
T ss_pred             ccchHHHhcCCCCCCccccCHHHHHHHhcccchHHHHHhCCCCceEEEecCcccccccccccCcceeehHHHHHHHHHHH
Confidence            88888999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChHHHHHHHHHH
Q 014167          162 YHARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTI  241 (429)
Q Consensus       162 ~~~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~i  241 (429)
                      +++||||||||+|||||||+|||.++||||||||+||+.||||||++.++|.++||+|+|||||++|++|++|..+|++|
T Consensus       164 ~h~RVLYIDIDvHHGDGVEeAFy~TDRVmTvSfHKyg~~fFPGTG~l~d~G~~kGkyyavNVPL~dGidD~sy~~if~pI  243 (425)
T KOG1342|consen  164 YHKRVLYIDIDVHHGDGVEEAFYTTDRVMTVSFHKYGPGFFPGTGDLSDIGAGKGKYYAVNVPLKDGIDDESYESIFKPI  243 (425)
T ss_pred             hCCceEEEEecccCCccHHHHHhccceeEEEEEEeccCCCCCCCCcceeccCCCCceEEEccchhccCCcHHHHHHHHHH
Confidence            99999999999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHHHHHhhhhcCCC
Q 014167          242 ISKVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTEL  321 (429)
Q Consensus       242 i~~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~~~t~~llg~~~  321 (429)
                      |.++++.|+|++||+|||+|||.||||||||||++||++|+++++++++|+++|||||||++||||||||+|++++|+++
T Consensus       244 i~~v~e~f~P~AiVLQCGaDSL~gDRlgcFnLsi~Gh~~Cv~fvksfn~pllvlGGGGYT~rNVARcWtYeT~v~~~~~~  323 (425)
T KOG1342|consen  244 ISKVMERFQPEAIVLQCGADSLAGDRLGCFNLSIKGHAECVKFVKSFNLPLLVLGGGGYTLRNVARCWTYETGVLLDQEL  323 (425)
T ss_pred             HHHHHHHhCCceEEEEcCCccccCCccceeeecchhHHHHHHHHHHcCCcEEEecCCccchhhhHHHHHHHhhhhcCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCchhhhhhCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCccccccCCCCCCCCCCccccCCccccc
Q 014167          322 PNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQMQEVPPDFYIPEFDEDEQNPDERM  401 (429)
Q Consensus       322 ~~~lP~~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~~~~~l~~~~~~p~v~~~~~~~~~~~~~~~~~~~~~~~~~  401 (429)
                      |++||+|+||+||+|||+|++.+++++|+|+++||++|++++.+|||++++|||||||.+|+.-......+++++++.|.
T Consensus       324 ~~elP~n~y~~yF~PDy~l~~~~~~~~n~Nt~~~l~~i~~~~~enL~~l~~apSVqm~~~p~~~~d~~~~~~~~~~d~~~  403 (425)
T KOG1342|consen  324 PNELPYNDYFEYFGPDYKLHIDPSNMENFNTPHYLESIRNEILENLRMLQHAPSVQMQMIPNPDFDEDMVEDEKDPDLRS  403 (425)
T ss_pred             cccCCCccchhhhCCCcccccCccchhcccCHHHHHHHHHHHHHHHHhccCCCcccccccCCCccchhhhhhhhCccccc
Confidence            99999999999999999999999999999999999999999999999999999999999998333333346778889999


Q ss_pred             cccccccccCCCCCCCCCCCCC
Q 014167          402 DQHTQDKQIQRDDEFYEGDNDN  423 (429)
Q Consensus       402 ~~~~~~~~~~~~~~~~~~~~~~  423 (429)
                      ++...|++++.++||+|+++++
T Consensus       404 ~~~~~~~~~~~~~e~~d~~~~~  425 (425)
T KOG1342|consen  404 SQESEDKDVQDDNEFYDGENEG  425 (425)
T ss_pred             chhhhhcccccchhhcccccCC
Confidence            9999999999999999998864

>PTZ00063 histone deacetylase; Provisional Back     alignment and domain information
>PTZ00346 histone deacetylase; Provisional Back     alignment and domain information
>COG0123 AcuC Deacetylases, including yeast histone deacetylase and acetoin utilization protein [Chromatin structure and dynamics / Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF00850 Hist_deacetyl: Histone deacetylase domain; InterPro: IPR023801 Regulation of transcription is, in part, modulated by reversible histone acetylation on several lysine Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1344 consensus Predicted histone deacetylase [Chromatin structure and dynamics] Back     alignment and domain information
>KOG1343 consensus Histone deacetylase complex, catalytic component HDA1 [Chromatin structure and dynamics] Back     alignment and domain information
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
4a69_A376 Structure Of Hdac3 Bound To Corepressor And Inosito 1e-141
3max_A367 Crystal Structure Of Human Hdac2 Complexed With An 1e-138
3f07_A388 Crystal Structure Analysis Of Human Hdac8 Complexed 6e-86
3mz3_A389 Crystal Structure Of Co2+ Hdac8 Complexed With M344 6e-86
3sff_A378 Crystal Structure Of Human Hdac8 Inhibitor Complex, 7e-86
1t64_A377 Crystal Structure Of Human Hdac8 Complexed With Tri 7e-86
2v5x_A388 Crystal Structure Of Hdac8-Inhibitor Complex Length 2e-85
2v5w_A388 Crystal Structure Of Hdac8-Substrate Complex Length 2e-85
3ezt_A388 Crystal Structure Analysis Of Human Hdac8 D101e Var 2e-85
3ezp_A388 Crystal Structure Analysis Of Human Hdac8 D101n Var 2e-85
3f06_A388 Crystal Structure Analysis Of Human Hdac8 D101a Var 4e-85
3ewf_A388 Crystal Structure Analysis Of Human Hdac8 H143a Var 5e-85
3ew8_A388 Crystal Structure Analysis Of Human Hdac8 D101l Var 7e-85
3mz4_A389 Crystal Structure Of D101l Mn2+ Hdac8 Complexed Wit 8e-85
1c3r_A375 Crystal Structure Of An Hdac Homolog Complexed With 1e-40
1c3p_A375 Crystal Structure Of An Hdac Homolog From Aquifex A 6e-40
2vqo_A413 Structure Of Hdac4 Catalytic Domain With A Gain-Of- 6e-21
2vqq_A413 Structure Of Hdac4 Catalytic Domain (A Double Cyste 7e-21
2vqw_G413 Structure Of Inhibitor-Free Hdac4 Catalytic Domain 8e-21
2vqj_A413 Structure Of Hdac4 Catalytic Domain Bound To A Trif 9e-21
3men_A362 Crystal Structure Of Acetylpolyamine Aminohydrolase 2e-18
3c0y_A423 Crystal Structure Of Catalytic Domain Of Human Hist 6e-18
1zz0_A369 Crystal Structure Of A Hdac-Like Protein With Aceta 7e-16
2vcg_A375 Crystal Structure Of A Hdac-like Protein Hdah From 7e-16
3q9b_A341 Crystal Structure Of Apah Complexed With M344 Lengt 7e-11
3q9c_A341 Crystal Structure Of H159a Apah Complexed With N8-A 5e-10
>pdb|4A69|A Chain A, Structure Of Hdac3 Bound To Corepressor And Inositol Tetraphosphate Length = 376 Back     alignment and structure 
Iteration: 1

 Score =  498 bits (1281), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 225/372 (60%), Positives = 289/372 (77%), Gaps = 1/372 (0%)
Query: 7   ISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSA 66
           ++YFYD DVG+ ++G  HPMKPHRL +TH LVL Y L+KKM +++P++A   ++ +FHS 
Sbjct: 5   VAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSE 64
Query: 67  DYVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCD 126
           DY++FL R++P     F + L  +N+G+DCPVF  LFEFC  Y G ++  A +LNN++CD
Sbjct: 65  DYIDFLQRVSPTNMQGFTKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICD 124
Query: 127 IAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFT 186
           IAINWAGGLHHAKK EASGFCY+ND+V+GILELLKYH RVLYIDID+HHGDGV+EAFY T
Sbjct: 125 IAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYHPRVLYIDIDIHHGDGVQEAFYLT 184
Query: 187 DRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVV 246
           DRVMTVSFHK+G+ FFPGTGD+ E+G   G++Y +NVPL+DGIDD S+  LF+ +I++VV
Sbjct: 185 DRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVINQVV 244
Query: 247 ETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVA 306
           + Y P  IVLQCGADSL  DRLGCFNLSI GH ECV +VK FN+PLLV GGGGYT  NVA
Sbjct: 245 DFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVA 304
Query: 307 RCWTVETGILLDTELPNEIPENEYIKYFAPECSLRIP-NGHIENLNSKSYLSTIKMQVLE 365
           RCWT ET +L++  +  E+P +EY +YFAP+ +L    +  IEN NS+ YL  I+  + E
Sbjct: 305 RCWTYETSLLVEEAISEELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFE 364
Query: 366 NLRSIQHAPSVQ 377
           NL+ + HAPSVQ
Sbjct: 365 NLKMLNHAPSVQ 376
>pdb|3MAX|A Chain A, Crystal Structure Of Human Hdac2 Complexed With An N-(2-Amin Benzamide Length = 367 Back     alignment and structure
>pdb|3F07|A Chain A, Crystal Structure Analysis Of Human Hdac8 Complexed With Apha In A New Monoclinic Crystal Form Length = 388 Back     alignment and structure
>pdb|3MZ3|A Chain A, Crystal Structure Of Co2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|3SFF|A Chain A, Crystal Structure Of Human Hdac8 Inhibitor Complex, An Amino Acid Derived Inhibitor Length = 378 Back     alignment and structure
>pdb|1T64|A Chain A, Crystal Structure Of Human Hdac8 Complexed With Trichostatin A Length = 377 Back     alignment and structure
>pdb|2V5X|A Chain A, Crystal Structure Of Hdac8-Inhibitor Complex Length = 388 Back     alignment and structure
>pdb|2V5W|A Chain A, Crystal Structure Of Hdac8-Substrate Complex Length = 388 Back     alignment and structure
>pdb|3EZT|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101e Variant Length = 388 Back     alignment and structure
>pdb|3EZP|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101n Variant Length = 388 Back     alignment and structure
>pdb|3F06|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101a Variant. Length = 388 Back     alignment and structure
>pdb|3EWF|A Chain A, Crystal Structure Analysis Of Human Hdac8 H143a Variant Complexed With Substrate. Length = 388 Back     alignment and structure
>pdb|3EW8|A Chain A, Crystal Structure Analysis Of Human Hdac8 D101l Variant Length = 388 Back     alignment and structure
>pdb|3MZ4|A Chain A, Crystal Structure Of D101l Mn2+ Hdac8 Complexed With M344 Length = 389 Back     alignment and structure
>pdb|1C3R|A Chain A, Crystal Structure Of An Hdac Homolog Complexed With Trichostatin A Length = 375 Back     alignment and structure
>pdb|1C3P|A Chain A, Crystal Structure Of An Hdac Homolog From Aquifex Aeolicus Length = 375 Back     alignment and structure
>pdb|2VQO|A Chain A, Structure Of Hdac4 Catalytic Domain With A Gain-Of-Function Muation Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQQ|A Chain A, Structure Of Hdac4 Catalytic Domain (A Double Cysteine-To- Alanine Mutant) Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|2VQW|G Chain G, Structure Of Inhibitor-Free Hdac4 Catalytic Domain (With Gain-Of-Function Mutation His332tyr) Length = 413 Back     alignment and structure
>pdb|2VQJ|A Chain A, Structure Of Hdac4 Catalytic Domain Bound To A Trifluoromethylketone Inhbitor Length = 413 Back     alignment and structure
>pdb|3MEN|A Chain A, Crystal Structure Of Acetylpolyamine Aminohydrolase From Burkholderia Pseudomallei, Iodide Soak Length = 362 Back     alignment and structure
>pdb|3C0Y|A Chain A, Crystal Structure Of Catalytic Domain Of Human Histone Deacetylase Hdac7 Length = 423 Back     alignment and structure
>pdb|1ZZ0|A Chain A, Crystal Structure Of A Hdac-Like Protein With Acetate Bound Length = 369 Back     alignment and structure
>pdb|2VCG|A Chain A, Crystal Structure Of A Hdac-like Protein Hdah From Bordetella Sp. With The Bound Inhibitor St-17 Length = 375 Back     alignment and structure
>pdb|3Q9B|A Chain A, Crystal Structure Of Apah Complexed With M344 Length = 341 Back     alignment and structure
>pdb|3Q9C|A Chain A, Crystal Structure Of H159a Apah Complexed With N8-Acetylspermidine Length = 341 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query429
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 0.0
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 0.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 0.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 0.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 4e-47
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 7e-46
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 9e-43
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 2e-40
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Length = 388 Back     alignment and structure
 Score =  594 bits (1534), Expect = 0.0
 Identities = 148/372 (39%), Positives = 226/372 (60%), Gaps = 3/372 (0%)

Query: 8   SYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSAD 67
            Y Y  +  S     +    P R  M H L+ +Y LHK+M I +P  A   E+A FH+  
Sbjct: 17  VYIYSPEYVS--MCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDA 74

Query: 68  YVEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDI 127
           Y++ L +++ +        + +Y LG  CP  E +F++     G TI AA+ L + +C +
Sbjct: 75  YLQHLQKVSQEGDDDHPDSI-EYGLGYLCPATEGIFDYAAAIGGATITAAQCLIDGMCKV 133

Query: 128 AINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTD 187
           AINW+GG HHAKK EASGFCY+ND VLGIL L +   R+LY+D+D+HHGDGVE+AF FT 
Sbjct: 134 AINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTS 193

Query: 188 RVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVE 247
           +VMTVS HKF   FFPGTGDV ++G  +G++Y++NVP++DGI D  + ++ ++++ +V +
Sbjct: 194 KVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQ 253

Query: 248 TYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVAR 307
            + P A+VLQ GAD++AGD +  FN++  G  +C++++ ++ L  L+ GGGGY   N AR
Sbjct: 254 AFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTAR 313

Query: 308 CWTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENL 367
           CWT  TG++L   L +EIP++E+   + P+  L I      + N    +  I   +  NL
Sbjct: 314 CWTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNL 373

Query: 368 RSIQHAPSVQMQ 379
           + +         
Sbjct: 374 KHVVIEGRSHHH 385
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Length = 376 Back     alignment and structure
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Length = 367 Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Length = 375 Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Length = 362 Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Length = 369 Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Length = 341 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
4a69_A376 Histone deacetylase 3,; transcription, hydrolase; 100.0
3max_A367 HD2, histone deacetylase 2; class 2, HDAC, foot po 100.0
3ew8_A388 HD8, histone deacetylase 8; hydrolase, HDAC, metal 100.0
1c3p_A375 Protein (HDLP (histone deacetylase-like protein) ) 100.0
1zz1_A369 Histone deacetylase-like amidohydrolase; HET: SHH; 100.0
2vqm_A413 HD4, histone deacetylase 4; inhibitor, repressor, 100.0
3q9b_A341 Acetylpolyamine amidohydrolase; HDAC, polyamines, 100.0
3men_A362 Acetylpolyamine aminohydrolase; histone deacetylas 100.0
2pqp_A421 HD7A, histone deacetylase 7A; HDAC, structural gen 100.0
>4a69_A Histone deacetylase 3,; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=8e-117  Score=897.83  Aligned_cols=374  Identities=60%  Similarity=1.151  Sum_probs=358.9

Q ss_pred             CCeEEEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhhh
Q 014167            4 KDKISYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLF   83 (429)
Q Consensus         4 ~~~v~~~y~~~~~~~~~g~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~~~~   83 (429)
                      |+||+|+|||+|++|.+|++|||+|.|+++++++|+++||++.+++++|++||.++|++|||++||++|++.++.+..+.
T Consensus         2 ~~~~~~~y~~~~~~~~~g~~HPe~p~Rl~~i~~~l~~~gl~~~~~~~~p~~At~e~L~~vHs~~Yi~~l~~~~~~~~~~~   81 (376)
T 4a69_A            2 AKTVAYFYDPDVGNFHYGAGHPMKPHRLALTHSLVLHYGLYKKMIVFKPYQASQHDMCRFHSEDYIDFLQRVSPTNMQGF   81 (376)
T ss_dssp             CCCEEEECCTTTTCCCCCTTCSCCTHHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHCCTTTGGGG
T ss_pred             CCeEEEEEChHHhCcCCCCCCCcCHHHHHHHHHHHHhcCCCCCceEeCCCCCCHHHHHHhCCHHHHHHHHHhCcccchhh
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999988665554


Q ss_pred             HhhhhccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHccCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHHhC
Q 014167           84 RQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYH  163 (429)
Q Consensus        84 ~~~~~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ll~~~  163 (429)
                      .....+|+++.|||+|+++|++|+++|||+|.||++|++|++++||||+||+|||++++|+||||||||||||++|++++
T Consensus        82 ~~~~~~~~l~~Dtpv~~~~~e~a~~aaGgtl~Aa~~v~~g~~~~A~~~~gG~HHA~~~~a~GFC~~NdvAiAa~~l~~~~  161 (376)
T 4a69_A           82 TKSLNAFNVGDDCPVFPGLFEFCSRYTGASLQGATQLNNKICDIAINWAGGLHHAKKFEASGFCYVNDIVIGILELLKYH  161 (376)
T ss_dssp             HHHHHHHTCSSSSCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTC
T ss_pred             hhhhceeccCCCCCcchHHHHHHHHHHHHHHHHHHHHHcCCcceeeeCCCCCCcCCcCCCCcchhhhHHHHHHHHHHHhC
Confidence            55566889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcEEEEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChHHHHHHHHHHHH
Q 014167          164 ARVLYIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIIS  243 (429)
Q Consensus       164 ~RVl~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~ii~  243 (429)
                      +||||||||||||||||++||+||+|||+|||+++..||||||..+++|.++|+||+|||||++|++|++|+.+|+++|.
T Consensus       162 ~RV~ivD~DvHHGnGtq~iF~~d~~Vl~~S~H~~~~~~fPgtG~~~e~G~g~g~g~~vNvPL~~G~~D~~yl~~~~~~l~  241 (376)
T 4a69_A          162 PRVLYIDIDIHHGDGVQEAFYLTDRVMTVSFHKYGNYFFPGTGDMYEVGAESGRYYCLNVPLRDGIDDQSYKHLFQPVIN  241 (376)
T ss_dssp             SCEEEEECSSSCCHHHHHHTTTCSSEEEEEEEECSTTCTTCCCCTTCCCCGGGTTSEEEEEECTTCBHHHHHHHHHHHHH
T ss_pred             CcEEEEeccCCCCcchhhHhcCCCCEEEEecccCCCcCCCCCCCccccCCCCCCceeEeeecCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999889999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHHHHHhhhhcCCCCC
Q 014167          244 KVVETYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPN  323 (429)
Q Consensus       244 ~i~~~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~~~t~~llg~~~~~  323 (429)
                      |++++|+||+||+|||+|+|.+||||+|+||++||++|+++++++++|+++++||||++++++|||+++|++++|.++|+
T Consensus       242 p~~~~f~Pd~IvvsaG~Da~~~DpLg~l~Lt~~g~~~~~~~l~~~~~p~v~v~eGGY~~~~var~w~~~~a~l~g~~~~~  321 (376)
T 4a69_A          242 QVVDFYQPTCIVLQCGADSLGCDRLGCFNLSIRGHGECVEYVKSFNIPLLVLGGGGYTVRNVARCWTYETSLLVEEAISE  321 (376)
T ss_dssp             HHHHHHCCSEEEEECCGGGBTTCSSCCCBBCHHHHHHHHHHHHTTCCCEEEECCCCCSHHHHHHHHHHHHHHHTTCCCCS
T ss_pred             HHHHHhCCCEEEEeCcccCCCCCcccCeecCHHHHHHHHHHHHHcCCCEEEEECCCCChhHHHHHHHHHHHHhcCCCccC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCchhhhhhCCCCCCCCC-CCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCccc
Q 014167          324 EIPENEYIKYFAPECSLRIP-NGHIENLNSKSYLSTIKMQVLENLRSIQHAPSVQ  377 (429)
Q Consensus       324 ~lP~~~~~~~~~p~~~l~~~-~~~~~n~n~~~~l~~i~~~~~~~l~~~~~~p~v~  377 (429)
                      +||+++|++||+|+|+|+++ +++|+|+|+++||++|+++|+||||++++|||||
T Consensus       322 ~~P~~~~~~~~~p~~~l~~~~~~~~~~~n~~~~l~~~~~~~~~~l~~~~~~p~~~  376 (376)
T 4a69_A          322 ELPYSEYFEYFAPDFTLHPDVSTRIENQNSRQYLDQIRQTIFENLKMLNHAPSVQ  376 (376)
T ss_dssp             BCCCCTTGGGGTTTCBSSCCCCCCSCCCCCHHHHHHHHHHHHHHHHTTC------
T ss_pred             CCCCchHHHHhCCCcccCCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCCCCCCC
Confidence            99999999999999999999 8999999999999999999999999999999998
>3max_A HD2, histone deacetylase 2; class 2, HDAC, foot pocket, hydrolase; HET: LLX NHE; 2.05A {Homo sapiens} Back     alignment and structure
>3ew8_A HD8, histone deacetylase 8; hydrolase, HDAC, metalloenzyme, arginase fold, HDAC8, histon deacetylase, hydroxamate inhibitor, unliganded; HET: B3N; 1.80A {Homo sapiens} SCOP: c.42.1.2 PDB: 3f06_A* 3ezp_A* 3ezt_A* 3f0r_A* 3f07_A* 2v5w_A* 2v5x_A* 3ewf_A* 3mz4_A* 3mz6_A* 3mz7_A* 3rqd_A* 3mz3_A* 1t64_A* 1t67_A* 1t69_A* 1vkg_A* 1w22_A* 3sff_A* 3sfh_A* Back     alignment and structure
>1c3p_A Protein (HDLP (histone deacetylase-like protein) ); alpha/beta fold, lyase; 1.80A {Aquifex aeolicus} SCOP: c.42.1.2 PDB: 1c3r_A* 1c3s_A* Back     alignment and structure
>1zz1_A Histone deacetylase-like amidohydrolase; HET: SHH; 1.57A {Alcaligenaceae bacterium} PDB: 1zz0_A* 1zz3_A* 2gh6_A* 2vcg_A* Back     alignment and structure
>2vqm_A HD4, histone deacetylase 4; inhibitor, repressor, chromatin, coiled coil, transcription regulation, UBL conjugation, chromatin regulator; HET: HA3; 1.8A {Homo sapiens} PDB: 2vqj_A* 2vqw_G 2vqq_A* 2vqo_A* 2vqv_A* 3c10_A* 3c0z_A 3c0y_A* Back     alignment and structure
>3q9b_A Acetylpolyamine amidohydrolase; HDAC, polyamines, arginase fold, deacetylase, hydrolase-HYDR inhibitor complex; HET: B3N; 2.25A {Mycoplana ramosa} PDB: 3q9f_A* 3q9c_A* 3q9e_A* Back     alignment and structure
>3men_A Acetylpolyamine aminohydrolase; histone deacetylase; 2.20A {Burkholderia pseudomallei 1710B} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 429
d1t64a_364 c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human 1e-101
d1c3pa_372 c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [Ta 4e-79
d3c10a1386 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 2e-54
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Length = 364 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  304 bits (780), Expect = e-101
 Identities = 149/362 (41%), Positives = 227/362 (62%), Gaps = 3/362 (0%)

Query: 9   YFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADY 68
           Y Y  +  S     +    P R  M H L+ +Y LHK+M I +P  A   E+A FH+  Y
Sbjct: 5   YIYSPEYVS--MCDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAY 62

Query: 69  VEFLHRITPDTQHLFRQELTKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIA 128
           ++ L +++ +       +  +Y LG DCP  E +F++     G TI AA+ L + +C +A
Sbjct: 63  LQHLQKVSQEGDDDHP-DSIEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVA 121

Query: 129 INWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVLYIDIDVHHGDGVEEAFYFTDR 188
           INW+GG HHAKK EASGFCY+ND VLGIL L +   R+LY+D+D+HHGDGVE+AF FT +
Sbjct: 122 INWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERILYVDLDLHHGDGVEDAFSFTSK 181

Query: 189 VMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVET 248
           VMTVS HKF   FFPGTGDV ++G  +G++Y++NVP++DGI D  + ++ ++++ +V + 
Sbjct: 182 VMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQA 241

Query: 249 YAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARC 308
           + P A+VLQ GAD++AGD +  FN++  G  +C++++ ++ L  L+ GGGGY   N ARC
Sbjct: 242 FNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARC 301

Query: 309 WTVETGILLDTELPNEIPENEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLR 368
           WT  TG++L   L +EIP++E+   + P+  L I      + N    +  I   +  NL+
Sbjct: 302 WTYLTGVILGKTLSSEIPDHEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLK 361

Query: 369 SI 370
            +
Sbjct: 362 HV 363
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Length = 372 Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Length = 386 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query429
d1t64a_364 Histone deacetylase 8, HDAC8 {Human (Homo sapiens) 100.0
d1c3pa_372 HDAC homologue {Aquifex aeolicus [TaxId: 63363]} 100.0
d3c10a1386 Histone deacetylase 7, HDAC7 {Human (Homo sapiens) 100.0
>d1t64a_ c.42.1.2 (A:) Histone deacetylase 8, HDAC8 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Arginase/deacetylase
superfamily: Arginase/deacetylase
family: Histone deacetylase, HDAC
domain: Histone deacetylase 8, HDAC8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.2e-106  Score=817.93  Aligned_cols=360  Identities=41%  Similarity=0.812  Sum_probs=345.1

Q ss_pred             EEEEcccccCCCCCCCCCCChHHHHHHHHHHHhCCCCCCcEEeCCCCCCHHHHHccCchHHHHHHHHhCCCchhhhHhhh
Q 014167            8 SYFYDGDVGSVYFGPNHPMKPHRLCMTHHLVLSYDLHKKMEIYRPHKAYPVELAQFHSADYVEFLHRITPDTQHLFRQEL   87 (429)
Q Consensus         8 ~~~y~~~~~~~~~g~~HP~~p~R~~~~~~ll~~~gl~~~~~~~~p~~at~~el~~~Hs~~Yi~~l~~~~~~~~~~~~~~~   87 (429)
                      .|+|||++.++  ++.|||+|.|++++++||+++||++++++++|++||.++|++|||++||++|++.++...... .+.
T Consensus         4 vyiy~~~~~~~--~~~hP~~P~R~~~~~~ll~~~gl~~~~~~v~p~~At~~el~~vHs~~Yi~~l~~~~~~~~~~~-~~~   80 (364)
T d1t64a_           4 VYIYSPEYVSM--CDSLAKIPKRASMVHSLIEAYALHKQMRIVKPKVASMEEMATFHTDAYLQHLQKVSQEGDDDH-PDS   80 (364)
T ss_dssp             EEECCHHHHHH--HTCSSSSCCHHHHHHHHHHHTTGGGGSEEECCCCCCHHHHTTTSCHHHHHHHHHHHHHCSSCC-TTT
T ss_pred             eEEeCHHHhcc--CCCCCCCcHHHHHHHHHHHHcCCccCCEEeCCCCCCHHHHHHhCCHHHHHHHHHhhhcccccc-chh
Confidence            68999999875  789999999999999999999999999999999999999999999999999998764332211 123


Q ss_pred             hccccCCCCCCChhHHHHHHHHHHHHHHHHHHHHccCcceeeecCCCCCCccccCCCCccccchHHHHHHHHHHhCCcEE
Q 014167           88 TKYNLGEDCPVFENLFEFCQIYAGGTIDAARRLNNQLCDIAINWAGGLHHAKKCEASGFCYINDLVLGILELLKYHARVL  167 (429)
Q Consensus        88 ~~~~l~~D~p~f~~l~~~~~~~aGgsl~aa~~l~~g~~~~Ain~~GG~HHA~~~~asGFC~~Ndiaiai~~ll~~~~RVl  167 (429)
                      .+|+++.|||+|+++|+++++++||+++|++.+.+|++++|+||+||+|||++++|+||||||||||||+++++..+||+
T Consensus        81 ~~~~l~~d~p~~~~~~~~~~~~aG~~l~A~~~~~~g~~~~a~~~~gg~HHA~~~~a~GFC~~NdvaiA~~~~~~~~~RV~  160 (364)
T d1t64a_          81 IEYGLGYDCPATEGIFDYAAAIGGATITAAQCLIDGMCKVAINWSGGWHHAKKDEASGFCYLNDAVLGILRLRRKFERIL  160 (364)
T ss_dssp             TTTTCBTTBCCCTTHHHHHHHHHHHHHHHHHHHHTTSCSEEEETTCCCTTCBTTBCBTTBSSCHHHHHHHHHTTTCSCEE
T ss_pred             eeecCCCCCCCCchHHHHHHHHhhhHHHHHHHHHcCCcccccccCccccccccccccccccccHHHHHHHHHHhhhceEE
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999988889999


Q ss_pred             EEecccccCCcceeccccCCCEEEEeecccCCCCCCCCCCCcccCCCCCcceEEeccCCCCCChHHHHHHHHHHHHHHHH
Q 014167          168 YIDIDVHHGDGVEEAFYFTDRVMTVSFHKFGDLFFPGTGDVKEIGEREGKFYAINVPLKDGIDDTSFTRLFKTIISKVVE  247 (429)
Q Consensus       168 ~IDiDvHHGDGtq~aF~~d~~VltiSiH~~g~~ffPgtG~~~~~G~g~G~~~~vNvPL~~g~~D~~y~~~f~~ii~~i~~  247 (429)
                      |||||||||||||++|++||+|+|+|||+++.+||||||..+++|.++|++|++||||++|++|++|+.+|+++|.|+++
T Consensus       161 iiD~DvHhGnGtq~iF~~d~~V~~~SiH~~~~~~~Pgtg~~~e~G~g~g~~~~~NvPL~~g~~d~~y~~~~~~~i~~~~~  240 (364)
T d1t64a_         161 YVDLDLHHGDGVEDAFSFTSKVMTVSLHKFSPGFFPGTGDVSDVGLGKGRYYSVNVPIQDGIQDEKYYQICESVLKEVYQ  240 (364)
T ss_dssp             EEECSSSCCHHHHHHHTTCSSEEEEEEEECCTTCTTCCCCTTCCCCGGGTTCEEEEEECTTCCHHHHHHHHHHHHHHHHH
T ss_pred             EEecccCCCCceeeeeecCCcccccccccccCCCCCCCCChhccCCcccccceeeeecccccChHHHHHHHHHhhHHHhh
Confidence            99999999999999999999999999999998999999999999999999999999999999999999999999999999


Q ss_pred             hcCCCEEEEecCCCCCCCCCCCCcccCHHHHHHHHHHHHhcCCCEEEEcCCCCCchhHHHHHHHHHhhhhcCCCCCCCCC
Q 014167          248 TYAPGAIVLQCGADSLAGDRLGCFNLSIDGHAECVRFVKKFNLPLLVTGGGGYTKENVARCWTVETGILLDTELPNEIPE  327 (429)
Q Consensus       248 ~f~Pd~Ivvq~G~Ds~~gDplg~~~ls~~g~~~~~~~l~~~~~pvl~lggGGY~~~~var~w~~~t~~llg~~~~~~lP~  327 (429)
                      +|+||+||+|||+|+|.+||||.|+||++||++|+++++++++|++++|||||++.++||||+++|++++|++++++||+
T Consensus       241 ~f~Pd~IvvsaG~D~~~~Dplg~~~lt~~g~~~~~~~l~~~~~p~~~~~~GGY~~~~~ar~w~~~~~~l~g~~~~~~~P~  320 (364)
T d1t64a_         241 AFNPKAVVLQLGADTIAGDPMCSFNMTPVGIGKCLKYILQWQLATLILGGGGYNLANTARCWTYLTGVILGKTLSSEIPD  320 (364)
T ss_dssp             HHCCSEEEEECCSTTBTTCTTCCCCBCHHHHHHHHHHHHTTCCEEEEECCCCCSHHHHHHHHHHHHHHHHTCCCCSBCCC
T ss_pred             cCCCCEEEEECCccCCCCCCCCCCcCCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHHHHHHHHcCCCCCccCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhhhCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcC
Q 014167          328 NEYIKYFAPECSLRIPNGHIENLNSKSYLSTIKMQVLENLRSI  370 (429)
Q Consensus       328 ~~~~~~~~p~~~l~~~~~~~~n~n~~~~l~~i~~~~~~~l~~~  370 (429)
                      |+||++|+|+|+|++.+++++|+|+.+||++|++.|.+|||++
T Consensus       321 ~~~~~~~~p~~~~~~~~~~~~~~n~~~~~~~i~~~i~~~l~~~  363 (364)
T d1t64a_         321 HEFFTAYGPDYVLEITPSCRPDRNEPHRIQQILNYIKGNLKHV  363 (364)
T ss_dssp             CTTGGGGTTTCBSCCCCCSCCCCCCHHHHHHHHHHHHHHHTTC
T ss_pred             chhhhhcCCCcccccCcccccccCCHHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999999999999999999986
>d1c3pa_ c.42.1.2 (A:) HDAC homologue {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
>d3c10a1 c.42.1.2 (A:515-900) Histone deacetylase 7, HDAC7 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure