Citrus Sinensis ID: 014443


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420----
MLWSEKLNWVVFYFVGILCVCSLITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASKLLHSPDASSSDKPLKGKSFIRFETVTFVRPKESASKQNEMQTITGMVEAIILEVKERERIGGSFLKTDLLCCTHNLSKEGSCSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQISEEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELA
cccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEEccccEEEEcccccccccccccccccccccEEEEEEEEEccccHHHHHcccccccccEEEEEEEEEcccccccccccccccccccccccccccccccEEEEcccccccccEEEEEEEccccccccccEEEEEccccEEEEEEEEEccccccEEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEc
cccHHHHHHHHHHHHHHHHHHHHHHHHcccHHHcccccccccccEEEEEccccEEEEcccccccccccccccccccEEEEEEEEEEEccHHHHHHcccccccccEEEEEEEEEccHHHccccccccEEEEEcHHHHHcccccccEEEEEcccccccccEEEEEEEcccccccccccEEEEccccEEEEEEEEEcccccccEEEEEEEEEcccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
mlwseklnWVVFYFVGILCVCSLITNvsgsiheykneafypksnafffhggseglyaskllhspdasssdkplkgksfirfetvtfvrpkesaskqnEMQTITGMVEAIILEVKEReriggsflktDLLCcthnlskegscsvgeviihvdpenhewpRRIKAFFQgtneetqisEEVEIERTGMYYLYFMycdpqlkgtmikgrtvwknpdgylpgkmaplmTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYanfnstgsrpmgITLWAVTFTSVKKTVSRLLLLAVSMGygvvrptlgglTFKVIFLGLVYFVASEALEMFENLgnindfsgkakLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELA
MLWSEKLNWVVFYFVGILCVCSLITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASKLLHSPDAsssdkplkgksfirfetvtfvrpkesaskqnemqtITGMVEAIILEVKERERIGGSFLKTDLLCCTHNLSKEGSCSVGEVIIHVDPENHEWPRRIKAFfqgtneetqiseevEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELA
MLWSEKLNWVVFYFVGILCVCSLITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASKLLHSPDASSSDKPLKGKSFIRFETVTFVRPKESASKQNEMQTITGMVEAIILEVKERERIGGSFLKTDLLCCTHNLSKEGSCSVGEVIIHVDPENHEWPRRIKAFFQGTNeetqiseeveieRTGMYYLYFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELA
**WSEKLNWVVFYFVGILCVCSLITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASK******************FIRFETVTFV*************TITGMVEAIILEVKERERIGGSFLKTDLLCCTHNLSKEGSCSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQISEEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFE**
******LNWVVFYFVGILCVCSLITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASKL************LKGKSFIRFETVTFV*****************MVEAIILEVKERERIGGSFLKTDLLCCTHNLSKEGSCSVGEVIIHVDPE*HEWPRR***************EEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELA
MLWSEKLNWVVFYFVGILCVCSLITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASKLLH**********LKGKSFIRFETVTFVRPKESASKQNEMQTITGMVEAIILEVKERERIGGSFLKTDLLCCTHNLSKEGSCSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQISEEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELA
MLWSEKLNWVVFYFVGILCVCSLITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASKL************LKGKSFIRFETVTFVRPKESASKQ***QTITGMVEAIILEVKERERIGGSFLKTDLLCCTHNLSKEGSCSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQISEEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELA
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
iiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
SSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooo
iiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MLWSEKLNWVVFYFVGILCVCSLITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASKLLHSPDASSSDKPLKGKSFIRFETVTFVRPKESASKQNEMQTITGMVEAIILEVKERERIGGSFLKTDLLCCTHNLSKEGSCSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQISEEVEIERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFELA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query424 2.2.26 [Sep-21-2011]
Q8BKU8 555 Transmembrane protein 87B yes no 0.471 0.360 0.416 5e-37
Q28EW0 541 Transmembrane protein 87A yes no 0.474 0.371 0.377 6e-36
Q96K49 555 Transmembrane protein 87B yes no 0.490 0.374 0.374 9e-36
Q8NBN3 555 Transmembrane protein 87A no no 0.488 0.372 0.360 3e-31
Q8BXN9 555 Transmembrane protein 87A no no 0.488 0.372 0.355 2e-30
O13989 505 Uncharacterized protein C yes no 0.535 0.449 0.263 2e-10
P32857 523 Membrane protein PTM1 OS= yes no 0.466 0.378 0.243 2e-07
A6ZZS6 523 Membrane protein PTM1 OS= N/A no 0.466 0.378 0.243 2e-07
P38745 532 Uncharacterized membrane no no 0.665 0.530 0.241 0.0003
>sp|Q8BKU8|TM87B_MOUSE Transmembrane protein 87B OS=Mus musculus GN=Tmem87b PE=2 SV=1 Back     alignment and function desciption
 Score =  155 bits (392), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 87/209 (41%), Positives = 130/209 (62%), Gaps = 9/209 (4%)

Query: 211 PDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITGVIALGMCEVA 270
           P GY+     PLM FY +M + Y++ G+ W L     WKDI+++ ++I  VI LGM E A
Sbjct: 206 PHGYISASDWPLMIFYMVMCIVYILYGVLWLLWSACYWKDILRIQFWIAAVIFLGMLEKA 265

Query: 271 VWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVI 330
           V+Y EY N NSTG    G+ ++A   ++VK+T++RLL++ VS+GYG+V+P LG +  +VI
Sbjct: 266 VFYSEYQNINSTGLSTQGLLIFAELISAVKRTLARLLVIIVSLGYGIVKPRLGTVMHRVI 325

Query: 331 FLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLP---VTVLDVCFILWIFSSLSRTLE 387
            LGL+Y + + A+E     G +    G   L  VL    + V+D  F+ +IF SL++T++
Sbjct: 326 GLGLLYLIFA-AIE-----GVMRVIGGSKHLAVVLTDIVLAVIDSIFVWFIFISLAQTMK 379

Query: 388 KLQMRRNLAKLELYRKFTNALAACVLLSI 416
            L++R+N  K  LYR FTN L   VL SI
Sbjct: 380 TLRLRKNTVKFSLYRHFTNTLIFAVLASI 408





Mus musculus (taxid: 10090)
>sp|Q28EW0|TM87A_XENTR Transmembrane protein 87A OS=Xenopus tropicalis GN=tmem87a PE=2 SV=1 Back     alignment and function description
>sp|Q96K49|TM87B_HUMAN Transmembrane protein 87B OS=Homo sapiens GN=TMEM87B PE=1 SV=1 Back     alignment and function description
>sp|Q8NBN3|TM87A_HUMAN Transmembrane protein 87A OS=Homo sapiens GN=TMEM87A PE=1 SV=3 Back     alignment and function description
>sp|Q8BXN9|TM87A_MOUSE Transmembrane protein 87A OS=Mus musculus GN=Tmem87a PE=1 SV=1 Back     alignment and function description
>sp|O13989|YEG7_SCHPO Uncharacterized protein C26H5.07c OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC26H5.07c PE=3 SV=2 Back     alignment and function description
>sp|P32857|PTM1_YEAST Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=PTM1 PE=1 SV=2 Back     alignment and function description
>sp|A6ZZS6|PTM1_YEAS7 Membrane protein PTM1 OS=Saccharomyces cerevisiae (strain YJM789) GN=PTM1 PE=3 SV=1 Back     alignment and function description
>sp|P38745|YHB7_YEAST Uncharacterized membrane protein YHL071W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YHL017W PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query424
225448713524 PREDICTED: transmembrane protein 87B [Vi 0.976 0.790 0.715 1e-178
147828308520 hypothetical protein VITISV_015392 [Viti 0.971 0.792 0.695 1e-168
225439703520 PREDICTED: transmembrane protein 87A [Vi 0.971 0.792 0.693 1e-168
224091120485 predicted protein [Populus trichocarpa] 0.931 0.814 0.742 1e-167
224140609455 predicted protein [Populus trichocarpa] 0.955 0.890 0.735 1e-166
449522001 539 PREDICTED: transmembrane protein 87B-lik 0.978 0.769 0.653 1e-165
449457393 539 PREDICTED: transmembrane protein 87B-lik 0.978 0.769 0.653 1e-165
297840387511 hypothetical protein ARALYDRAFT_893342 [ 0.969 0.804 0.697 1e-164
357490249 541 Transmembrane protein 87B [Medicago trun 0.952 0.746 0.687 1e-163
4508069 534 Hypothetical protein [Arabidopsis thalia 0.969 0.769 0.699 1e-163
>gi|225448713|ref|XP_002280844.1| PREDICTED: transmembrane protein 87B [Vitis vinifera] gi|297736477|emb|CBI25348.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 297/415 (71%), Positives = 349/415 (84%), Gaps = 1/415 (0%)

Query: 9   WVVFYFVGILCVCSLITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASKLLHSPDASS 68
           W +  F+G + + S  T V  SIHEY+NE F  + N++FFHGGSEGLYASKL H P  +S
Sbjct: 6   WDLVRFLGFMLLWSSATVVQASIHEYRNEGFSRRLNSYFFHGGSEGLYASKL-HLPHPNS 64

Query: 69  SDKPLKGKSFIRFETVTFVRPKESASKQNEMQTITGMVEAIILEVKERERIGGSFLKTDL 128
            DKPL GKSFIRFE++TF R KE+  KQNEMQ  TG++EAII+EVK+R RIGGS+  TD+
Sbjct: 65  EDKPLNGKSFIRFESITFRRTKETTEKQNEMQQKTGLIEAIIVEVKDRGRIGGSYENTDV 124

Query: 129 LCCTHNLSKEGSCSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQISEEVEIERTGMYYL 188
           +CC   L+++GSC VGEVII  DP N +WP+RI+  F+G NEE  + + VEI  TGMYYL
Sbjct: 125 ICCNPKLAEQGSCKVGEVIIRQDPNNPDWPKRIQTSFEGKNEEATLIQTVEINSTGMYYL 184

Query: 189 YFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLW 248
           YFM+CDPQLKGT++ GRTVW+NPDGYLPGKMAPLMTF G MSLAYLVLGL WFL+FVQ W
Sbjct: 185 YFMFCDPQLKGTILSGRTVWRNPDGYLPGKMAPLMTFSGFMSLAYLVLGLVWFLQFVQYW 244

Query: 249 KDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLL 308
           KDII LHY+IT VI LGMCE+A WYFEYANFNSTG+RPMGITLWAVTF++VKKTVSRLLL
Sbjct: 245 KDIIHLHYHITAVIGLGMCEMAFWYFEYANFNSTGNRPMGITLWAVTFSAVKKTVSRLLL 304

Query: 309 LAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLPVT 368
           L VSMGYGVVRPTLGG+T KV+ LG +YFVA+EALE+ E+LGNINDFSGKAK+F VLPV 
Sbjct: 305 LVVSMGYGVVRPTLGGITPKVLLLGFMYFVATEALELVEHLGNINDFSGKAKVFLVLPVA 364

Query: 369 VLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFEL 423
           +LD CFILWIFSSLS+TLEKLQMRR++AK+ELYRKFTNALA  VLLS+AWIG+EL
Sbjct: 365 LLDACFILWIFSSLSKTLEKLQMRRSMAKMELYRKFTNALAVSVLLSVAWIGYEL 419




Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147828308|emb|CAN66485.1| hypothetical protein VITISV_015392 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225439703|ref|XP_002272360.1| PREDICTED: transmembrane protein 87A [Vitis vinifera] gi|297735536|emb|CBI18030.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224091120|ref|XP_002309185.1| predicted protein [Populus trichocarpa] gi|222855161|gb|EEE92708.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224140609|ref|XP_002323674.1| predicted protein [Populus trichocarpa] gi|222868304|gb|EEF05435.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449522001|ref|XP_004168017.1| PREDICTED: transmembrane protein 87B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449457393|ref|XP_004146433.1| PREDICTED: transmembrane protein 87B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297840387|ref|XP_002888075.1| hypothetical protein ARALYDRAFT_893342 [Arabidopsis lyrata subsp. lyrata] gi|297333916|gb|EFH64334.1| hypothetical protein ARALYDRAFT_893342 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357490249|ref|XP_003615412.1| Transmembrane protein 87B [Medicago truncatula] gi|355516747|gb|AES98370.1| Transmembrane protein 87B [Medicago truncatula] Back     alignment and taxonomy information
>gi|4508069|gb|AAD21413.1| Hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query424
TAIR|locus:2195758513 AT1G61670 "AT1G61670" [Arabido 0.971 0.803 0.687 4e-154
TAIR|locus:2194017 509 AT1G72480 "AT1G72480" [Arabido 0.945 0.787 0.501 1.9e-108
TAIR|locus:2197449516 AT1G10980 "AT1G10980" [Arabido 0.959 0.788 0.490 5.3e-104
TAIR|locus:2045766496 AT2G01070 "AT2G01070" [Arabido 0.879 0.752 0.463 3e-95
UNIPROTKB|F6X9D0 556 TMEM87B "Uncharacterized prote 0.485 0.370 0.387 2.1e-38
MGI|MGI:1919727 555 Tmem87b "transmembrane protein 0.478 0.365 0.410 4.3e-38
UNIPROTKB|F1SU90 552 LOC100737870 "Uncharacterized 0.483 0.371 0.388 1.1e-37
UNIPROTKB|F1SU99 553 LOC100737870 "Uncharacterized 0.483 0.370 0.388 1.1e-37
UNIPROTKB|E2QV48487 TMEM87B "Uncharacterized prote 0.483 0.420 0.388 1.5e-37
UNIPROTKB|E2RFT6 551 TMEM87B "Uncharacterized prote 0.471 0.362 0.389 1.9e-37
TAIR|locus:2195758 AT1G61670 "AT1G61670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1503 (534.1 bits), Expect = 4.0e-154, P = 4.0e-154
 Identities = 284/413 (68%), Positives = 336/413 (81%)

Query:    12 FYFVGILCVCSLITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASKLLHSPDASSSDK 71
             F+ +G+L + SLI    GSIHEY NE F  K NA FFHGGSEGLYASK      +SSSD 
Sbjct:     8 FWAIGVLLIGSLIGATEGSIHEYNNEKFTAKFNARFFHGGSEGLYASKSQDLNSSSSSDN 67

Query:    72 PLKGKSFIRFETVTFVRPKESASKQNEMQTITGMVEAIILEVKERERIGGSFLKTDLLCC 131
               KGKSFIRF+ VTFVR KESASKQN MQ+ +G+VEAIILEVK+R+RIGG+FLK++++CC
Sbjct:    68 SFKGKSFIRFDDVTFVRTKESASKQNAMQSTSGLVEAIILEVKDRDRIGGTFLKSEVICC 127

Query:   132 THNLSKEGSCSVGEVIIHVDPENHEWPRRIKAFFQGTNXXXXXX-XXXXXXRTGMYYLYF 190
             T  L+  GSCS+GEVII  +  + EWPR+IK FF+G               +TGMYYLYF
Sbjct:   128 TPELADTGSCSLGEVIIKRESNDVEWPRQIKTFFKGNKTEVNMSPETVVINKTGMYYLYF 187

Query:   191 MYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKD 250
             M CDP+L GT IKGRTVWKNPDGYLPGK+APLM  +G MSLAY++LGL WF+RFVQ WKD
Sbjct:   188 MICDPELDGTRIKGRTVWKNPDGYLPGKVAPLMNVFGFMSLAYILLGLVWFVRFVQFWKD 247

Query:   251 IIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLA 310
             IIQLHY+IT VIALGMCE+AV YFEY NFNSTG RPM +TLWAVTF+S+KKT+SRLLLL 
Sbjct:   248 IIQLHYHITLVIALGMCEMAVRYFEYVNFNSTGMRPMDVTLWAVTFSSIKKTLSRLLLLV 307

Query:   311 VSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDFSGKAKLFFVLPVTVL 370
             VSMGYGVV+PTLGG+T +++ LG++YFVA+EALE+ E+LGNINDFSGK  +  V+PV +L
Sbjct:   308 VSMGYGVVKPTLGGITSRILLLGVIYFVATEALELVEHLGNINDFSGKTMIVLVIPVALL 367

Query:   371 DVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIGFEL 423
             D CFILWIFSSL+RTLEKLQ++RN+AKLELYR FTNALA  VLLSIAWIGFEL
Sbjct:   368 DACFILWIFSSLARTLEKLQIKRNMAKLELYRNFTNALAISVLLSIAWIGFEL 420




GO:0003674 "molecular_function" evidence=ND
GO:0005794 "Golgi apparatus" evidence=ISM;IDA
GO:0016021 "integral to membrane" evidence=IEA
TAIR|locus:2194017 AT1G72480 "AT1G72480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2197449 AT1G10980 "AT1G10980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2045766 AT2G01070 "AT2G01070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F6X9D0 TMEM87B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:1919727 Tmem87b "transmembrane protein 87B" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|F1SU90 LOC100737870 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|F1SU99 LOC100737870 "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|E2QV48 TMEM87B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RFT6 TMEM87B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
GSVIVG00029462001
SubName- Full=Chromosome chr13 scaffold_48, whole genome shotgun sequence; (524 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query424
pfam06814287 pfam06814, Lung_7-TM_R, Lung seven transmembrane r 1e-103
>gnl|CDD|219188 pfam06814, Lung_7-TM_R, Lung seven transmembrane receptor Back     alignment and domain information
 Score =  307 bits (789), Expect = e-103
 Identities = 124/244 (50%), Positives = 160/244 (65%), Gaps = 2/244 (0%)

Query: 180 IERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLA 239
           I++TG+Y LYF         T +KG+  WKNP GYL    APLM FYG+MSLAY++LG  
Sbjct: 1   IKKTGLYCLYFH--SGSKSSTALKGKVNWKNPYGYLSASEAPLMPFYGIMSLAYVLLGAL 58

Query: 240 WFLRFVQLWKDIIQLHYYITGVIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSV 299
           WF    + W DI+ L  YI  VIALGM E+A  Y +YA  NS GS P G+ ++A   +++
Sbjct: 59  WFFILFKYWHDILPLQKYIAAVIALGMVELAFHYIDYAFINSKGSSPEGLAVFASILSAL 118

Query: 300 KKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVASEALEMFENLGNINDFSGKA 359
           KKT+SR+LLL VS+GYG+V+PTLG    KV  +GL+YFVA+  L +    G  +D S K 
Sbjct: 119 KKTLSRILLLIVSLGYGIVKPTLGDTLKKVAGIGLLYFVAACVLFIVRESGIESDSSYKL 178

Query: 360 KLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWI 419
            LFF+LP+ +LD+ FI WIF SLS+TL  L++RRNL KL LYR FTN LA  V+ S   I
Sbjct: 179 VLFFLLPLALLDLFFIYWIFRSLSKTLRDLKLRRNLVKLSLYRHFTNMLACSVVASFIII 238

Query: 420 GFEL 423
             E 
Sbjct: 239 LVEK 242


This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins. Length = 287

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 424
KOG2568 518 consensus Predicted membrane protein [Function unk 100.0
PF06814295 Lung_7-TM_R: Lung seven transmembrane receptor; In 100.0
KOG2569440 consensus G protein-coupled seven transmembrane re 100.0
PF10192257 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane dom 99.33
KOG4290429 consensus Predicted membrane protein [Function unk 97.94
>KOG2568 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information
Probab=100.00  E-value=3.6e-95  Score=749.72  Aligned_cols=391  Identities=48%  Similarity=0.821  Sum_probs=373.4

Q ss_pred             hhhcceeeeeeccCCCccCCCCeEEEecCcceeeccCCCCCCCCCCCCCCCCCCceeEEeeeEeecCccccccccccccc
Q 014443           23 LITNVSGSIHEYKNEAFYPKSNAFFFHGGSEGLYASKLLHSPDASSSDKPLKGKSFIRFETVTFVRPKESASKQNEMQTI  102 (424)
Q Consensus        23 ~~~~~~~~~h~y~~~~f~~~~~~~~~~~~~~g~y~~~~~~~~~~~~~~~~~~~~s~I~f~~~~f~~~~~~~~~~~~~~~~  102 (424)
                      +.+.+..++|+|..++|....|++.+|||+||+|++..   +|+.++..|   .|+|||+++++.|+++.++++|+    
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ys~~~---~d~~~s~~p---~~~~~f~~~t~~~~~~~~~~~n~----   80 (518)
T KOG2568|consen   11 ISLLAWLSFLSYVYSEFASELNAQHFHGVSEGIYSSFV---SDLFGSLDP---ESFIRFDSITLVRTSESADEQNS----   80 (518)
T ss_pred             HHHhhhHhheechhhhhhhhhcceeeeccccccccccH---HHhcCCCCc---cccccceeEEEEEccCccccccc----
Confidence            33445899999999999999999999999999999854   577777666   89999999999999987665554    


Q ss_pred             cceEEEEEEeeccccccCCcCC-CCceeecCcccccCCCCCCCCEEecCCCCCCCCceeeeeeeccCcccccc-ceeEEe
Q 014443          103 TGMVEAIILEVKERERIGGSFL-KTDLLCCTHNLSKEGSCSVGEVIIHVDPENHEWPRRIKAFFQGTNEETQI-SEEVEI  180 (424)
Q Consensus       103 ~g~v~~vIfe~~D~~~iG~~~~-g~~~~cC~~~~~~~g~C~~g~~Ii~~~~~~~~~~~~~~~~f~~~~~~~~~-~~~y~V  180 (424)
                      .|.|+++||||||+++||++++ |++.||||+++++.|.|++|++|+.|+++||.||++..+.+++++.+..+ +..|+|
T Consensus        81 ~~~v~~~ife~kd~~~iG~~~~~~e~~~~C~~~~~~~g~c~~~~~i~~~~~~dp~~~~~~~~~~t~~~~e~~m~~~~~~I  160 (518)
T KOG2568|consen   81 NGLVEALIFEFKDRNKIGGSDDDGEKLYICTPDLADTGSCKEGEVIYLPNPTDPEWPKLNSVILTFNDAEVGMSPPAYPI  160 (518)
T ss_pred             ccceeeeeeehhhhhccCCcCCCCceEEecCHhHHhcCCcCCCceEEecCCCCCCcccccceeecccccccCCCCceEEe
Confidence            5899999999999999999998 89999999999999999999999999999999999999999998888888 999999


Q ss_pred             CccceEEEEEEEeCCCCCceEEEEEEEEECCCCCCCCcccCchhHHHHHHHHHHHHHHHHHHHHHhhchhhHHHHHHHHH
Q 014443          181 ERTGMYYLYFMYCDPQLKGTMIKGRTVWKNPDGYLPGKMAPLMTFYGLMSLAYLVLGLAWFLRFVQLWKDIIQLHYYITG  260 (424)
Q Consensus       181 ~ktG~Y~v~~~~C~~~~~~~~~~g~v~fkN~yGyLpa~~~pll~fY~~m~i~Y~~l~i~W~~~~~k~rk~ll~lq~~I~a  260 (424)
                      +|||+||+++.+|+++.++.+.+|+|+||||||||||+++|++|||++|+++|.+++++|+++++|||||++|||+||++
T Consensus       161 ~ktG~Y~v~~~~~~~s~~~~~~~~~v~wkNpyGyL~a~~~Plm~fy~~m~laYvllgllW~~~~~~y~~diL~lQ~~I~~  240 (518)
T KOG2568|consen  161 KKTGYYCVYFISCDSSLESYKATGSVNWKNPYGYLPASDAPLMPFYGFMCLAYVLLGLLWFFQCAQYWHDILPLQKYITA  240 (518)
T ss_pred             ccCcEEEEEEEeecCccccccccceEEEECCCCCcChhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998888999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhhcCcCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCccceeeccCcceeeEEeehhHHHHHH
Q 014443          261 VIALGMCEVAVWYFEYANFNSTGSRPMGITLWAVTFTSVKKTVSRLLLLAVSMGYGVVRPTLGGLTFKVIFLGLVYFVAS  340 (424)
Q Consensus       261 vi~l~~~e~~~~~~~y~~~N~~G~~~~~~~v~~~il~a~k~tls~~LlLlVsmGYGVVkp~L~~~~~kv~~l~v~yfv~s  340 (424)
                      +++|+|+|++++|.+|.+.|.+|.++++.++++++++|+|+|++|+|+|+||||||||||+||+.+.|+..+++.||+++
T Consensus       241 Vi~lgm~E~av~y~~y~~~N~tG~~~~~~~~~a~i~sa~K~Tlsr~LlLIVSlGYGIVkP~Lg~~l~rv~~ig~~~~i~s  320 (518)
T KOG2568|consen  241 VIALGMAETAVFYSEYANFNSTGMSPKVYTVFASILSAIKKTLSRLLLLIVSLGYGIVKPTLGGTLLRVCQIGVIYFIAS  320 (518)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHhcCcceEecCcchHHHHHHHHhHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCCCCCCccchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 014443          341 EALEMFENLGNINDFSGKAKLFFVLPVTVLDVCFILWIFSSLSRTLEKLQMRRNLAKLELYRKFTNALAACVLLSIAWIG  420 (424)
Q Consensus       341 ~~l~v~~~v~~~~d~s~~~~l~~~lpla~~~a~f~vWi~~SL~~T~~~Lk~~rq~~KL~lYr~f~~~li~~vv~s~~fi~  420 (424)
                      +++++++++++++|.++...++.++|+|+++++|++|||+||++|+|+||.|||++||+|||||+++++++|++|++|++
T Consensus       321 ~i~~l~~~~g~~se~~~~~~lf~~ip~ai~d~~f~~wIF~SL~~Tlk~Lr~rRn~vKl~lYr~F~n~l~~~Vvas~~~i~  400 (518)
T KOG2568|consen  321 EILGLARVIGNISELSSLLILFAALPLAILDAAFIYWIFISLAKTLKKLRLRRNIVKLSLYRKFTNTLAFSVVASFAFIL  400 (518)
T ss_pred             HHHHHHHHhcCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcc
Q 014443          421 FEL  423 (424)
Q Consensus       421 ~~~  423 (424)
                      ||+
T Consensus       401 ~~~  403 (518)
T KOG2568|consen  401 VET  403 (518)
T ss_pred             HHH
Confidence            985



>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins Back     alignment and domain information
>KOG2569 consensus G protein-coupled seven transmembrane receptor [Signal transduction mechanisms] Back     alignment and domain information
>PF10192 GpcrRhopsn4: Rhodopsin-like GPCR transmembrane domain; InterPro: IPR019336 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes) Back     alignment and domain information
>KOG4290 consensus Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00