Citrus Sinensis ID: 014483

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD
ccHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHccHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHcccccHHHHHHHccccccccccc
ccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccHHHcccEcccccccHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEccEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcEEccccccccccccccccHHHHHHHHHHHHHccccEEcccHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccEccEcccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHcEEcHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHcccccHHHHHHHccHHHcccccc
MPEPIVRAFGILKKCAAKVnmeygldpAIGKAIMQAAQEVAegklndhfplvvwqtgsgtqsnmNANEVIANRAAEILghkrgekivhpndhvnrsqssndtfpTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGrthtqdatpltlgqefsgytTQVKYGIDRvicclprmyqlaqggtavgtglntkkgfDVKIASAVaeetslpfvtaENKFEALAAHDAFVETSGALNTVAASLMKIANDvrllgsgprcglgelilpenepgssimpgkvnptqcEALTMVCAQVIGNHVAitvggsnghfelnvfkPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVtslnpkigydNAAAVAKKAHKEGTTLKDAALKLGvlnseefdnlvvpekmigpsd
MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKivhpndhvnrsqssndTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRthtqdatpltlgqefsGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGvlnseefdnlvvpekmigpsd
MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD
****IVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGS*********EVIANRAAEIL*************************PTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILP************VNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLV**********
MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG***
MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD
MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG***
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIGPSD
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query423 2.2.26 [Sep-21-2011]
Q9FI53499 Fumarate hydratase 2, chl yes no 1.0 0.847 0.895 0.0
P93033492 Fumarate hydratase 1, mit yes no 1.0 0.859 0.900 0.0
Q60HF9510 Fumarate hydratase, mitoc N/A no 0.995 0.825 0.725 0.0
Q7SX99509 Fumarate hydratase, mitoc yes no 0.995 0.827 0.725 0.0
P07954510 Fumarate hydratase, mitoc yes no 0.995 0.825 0.725 0.0
P14408507 Fumarate hydratase, mitoc yes no 0.995 0.830 0.720 1e-180
P97807507 Fumarate hydratase, mitoc yes no 0.995 0.830 0.720 1e-180
P10173466 Fumarate hydratase, mitoc yes no 0.995 0.903 0.722 1e-179
P55250494 Fumarate hydratase, mitoc N/A no 1.0 0.856 0.716 1e-175
O17214501 Probable fumarate hydrata yes no 0.995 0.840 0.701 1e-175
>sp|Q9FI53|FUM2_ARATH Fumarate hydratase 2, chloroplastic OS=Arabidopsis thaliana GN=FUM2 PE=2 SV=1 Back     alignment and function desciption
 Score =  795 bits (2052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 379/423 (89%), Positives = 402/423 (95%)

Query: 1   MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 60
           MPEPIVRAFG+LKKCAAKVNMEYGLDP IG+AIM+AAQEVAEGKLNDHFPLVVWQTGSGT
Sbjct: 77  MPEPIVRAFGVLKKCAAKVNMEYGLDPMIGEAIMEAAQEVAEGKLNDHFPLVVWQTGSGT 136

Query: 61  QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 120
           QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAA E  SRLI
Sbjct: 137 QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAATEITSRLI 196

Query: 121 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPR 180
           P+LK LH+SL SKS EFKDIVKIGRTHTQDATPLTLGQEF GY TQV+YG++RV C LPR
Sbjct: 197 PSLKNLHSSLESKSFEFKDIVKIGRTHTQDATPLTLGQEFGGYATQVEYGLNRVACTLPR 256

Query: 181 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 240
           +YQLAQGGTAVGTGLNTKKGFDVKIA+AVAEET+LPFVTAENKFEALAAHDA VETSG+L
Sbjct: 257 IYQLAQGGTAVGTGLNTKKGFDVKIAAAVAEETNLPFVTAENKFEALAAHDACVETSGSL 316

Query: 241 NTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVI 300
           NT+A SLMKIAND+R LGSGPRCGLGEL LPENEPGSSIMPGKVNPTQCEALTMVCAQV+
Sbjct: 317 NTIATSLMKIANDIRFLGSGPRCGLGELSLPENEPGSSIMPGKVNPTQCEALTMVCAQVM 376

Query: 301 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 360
           GNHVA+T+GGSNGHFELNVFKP+IAS LLHS+RL+ DASASFEKNCVRGI+ANRERISKL
Sbjct: 377 GNHVAVTIGGSNGHFELNVFKPVIASALLHSIRLIADASASFEKNCVRGIEANRERISKL 436

Query: 361 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 420
           LHESLMLVTSLNPKIGYDNAAAVAK+AHKEG TLK AA+KLGVL SEEFD LVVPEKMIG
Sbjct: 437 LHESLMLVTSLNPKIGYDNAAAVAKRAHKEGCTLKHAAMKLGVLTSEEFDTLVVPEKMIG 496

Query: 421 PSD 423
           PSD
Sbjct: 497 PSD 499

Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 2
>sp|P93033|FUM1_ARATH Fumarate hydratase 1, mitochondrial OS=Arabidopsis thaliana GN=FUM1 PE=1 SV=2 Back     alignment and function description
>sp|Q60HF9|FUMH_MACFA Fumarate hydratase, mitochondrial OS=Macaca fascicularis GN=FH PE=2 SV=1 Back     alignment and function description
>sp|Q7SX99|FUMH_DANRE Fumarate hydratase, mitochondrial OS=Danio rerio GN=fh PE=2 SV=1 Back     alignment and function description
>sp|P07954|FUMH_HUMAN Fumarate hydratase, mitochondrial OS=Homo sapiens GN=FH PE=1 SV=3 Back     alignment and function description
>sp|P14408|FUMH_RAT Fumarate hydratase, mitochondrial OS=Rattus norvegicus GN=Fh PE=1 SV=1 Back     alignment and function description
>sp|P97807|FUMH_MOUSE Fumarate hydratase, mitochondrial OS=Mus musculus GN=Fh PE=1 SV=3 Back     alignment and function description
>sp|P10173|FUMH_PIG Fumarate hydratase, mitochondrial OS=Sus scrofa GN=FH PE=1 SV=1 Back     alignment and function description
>sp|P55250|FUMH_RHIOR Fumarate hydratase, mitochondrial OS=Rhizopus oryzae GN=FUMR PE=3 SV=1 Back     alignment and function description
>sp|O17214|FUMH_CAEEL Probable fumarate hydratase, mitochondrial OS=Caenorhabditis elegans GN=fum-1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
224068388490 predicted protein [Populus trichocarpa] 1.0 0.863 0.936 0.0
356500262495 PREDICTED: fumarate hydratase 1, mitocho 1.0 0.854 0.924 0.0
356500272465 PREDICTED: fumarate hydratase 2, chlorop 1.0 0.909 0.921 0.0
356534969495 PREDICTED: fumarate hydratase 1, mitocho 1.0 0.854 0.914 0.0
449469056495 PREDICTED: fumarate hydratase 1, mitocho 1.0 0.854 0.919 0.0
15241331499 fumarate hydratase 2 [Arabidopsis thalia 1.0 0.847 0.895 0.0
186531130423 fumarate hydratase 2 [Arabidopsis thalia 1.0 1.0 0.895 0.0
225437455494 PREDICTED: fumarate hydratase 1, mitocho 1.0 0.856 0.917 0.0
297824853492 hypothetical protein ARALYDRAFT_483931 [ 1.0 0.859 0.905 0.0
15226618492 fumarate hydratase, class II [Arabidopsi 1.0 0.859 0.900 0.0
>gi|224068388|ref|XP_002302734.1| predicted protein [Populus trichocarpa] gi|222844460|gb|EEE82007.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  826 bits (2133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 396/423 (93%), Positives = 410/423 (96%)

Query: 1   MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 60
           MPEPI+RAFGILKKCAAKVNM+YGLDP+IGKAIMQAA EVAEGKL+DHFPLVVWQTGSGT
Sbjct: 68  MPEPIIRAFGILKKCAAKVNMQYGLDPSIGKAIMQAAHEVAEGKLSDHFPLVVWQTGSGT 127

Query: 61  QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 120
           QSNMNANEVIANRAAEILGHKRGEK VHPNDHVNRSQSSNDTFPTVMHIAAA E NSRLI
Sbjct: 128 QSNMNANEVIANRAAEILGHKRGEKFVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLI 187

Query: 121 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPR 180
           P LK LH +LHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRV+C LP 
Sbjct: 188 PKLKTLHLTLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVMCTLPH 247

Query: 181 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 240
           MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEET+LPFVTAENKFEALAAHDAFVETSGAL
Sbjct: 248 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETNLPFVTAENKFEALAAHDAFVETSGAL 307

Query: 241 NTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVI 300
           NTVA SLMKIAND+RLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV+
Sbjct: 308 NTVATSLMKIANDIRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVM 367

Query: 301 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 360
           GNHVAITVGGSNGHFELNVFKPMIASGLLHS+RLLGDASASFEKNCVRGIQANRERISKL
Sbjct: 368 GNHVAITVGGSNGHFELNVFKPMIASGLLHSIRLLGDASASFEKNCVRGIQANRERISKL 427

Query: 361 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 420
           LHESLMLVTSLNPKIGYDNAAAVAK AHKEG+TLK+AALKLG+L SEEFD LVVPEKMIG
Sbjct: 428 LHESLMLVTSLNPKIGYDNAAAVAKLAHKEGSTLKEAALKLGMLTSEEFDTLVVPEKMIG 487

Query: 421 PSD 423
           P+D
Sbjct: 488 PTD 490

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|356500262|ref|XP_003518952.1| PREDICTED: fumarate hydratase 1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|356500272|ref|XP_003518957.1| PREDICTED: fumarate hydratase 2, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|356534969|ref|XP_003536023.1| PREDICTED: fumarate hydratase 1, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|449469056|ref|XP_004152237.1| PREDICTED: fumarate hydratase 1, mitochondrial-like [Cucumis sativus] gi|449484240|ref|XP_004156827.1| PREDICTED: fumarate hydratase 1, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|15241331|ref|NP_199908.1| fumarate hydratase 2 [Arabidopsis thaliana] gi|39931631|sp|Q9FI53.1|FUM2_ARATH RecName: Full=Fumarate hydratase 2, chloroplastic; Short=Fumarase 2; Flags: Precursor gi|9758242|dbj|BAB08741.1| fumarate hydratase [Arabidopsis thaliana] gi|15529147|gb|AAK97668.1| AT5g50950/K3K7_11 [Arabidopsis thaliana] gi|21360525|gb|AAM47378.1| AT5g50950/K3K7_11 [Arabidopsis thaliana] gi|332008632|gb|AED96015.1| fumarate hydratase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|186531130|ref|NP_001119412.1| fumarate hydratase 2 [Arabidopsis thaliana] gi|332008633|gb|AED96016.1| fumarate hydratase 2 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225437455|ref|XP_002273033.1| PREDICTED: fumarate hydratase 1, mitochondrial [Vitis vinifera] gi|297743928|emb|CBI36898.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297824853|ref|XP_002880309.1| hypothetical protein ARALYDRAFT_483931 [Arabidopsis lyrata subsp. lyrata] gi|297326148|gb|EFH56568.1| hypothetical protein ARALYDRAFT_483931 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15226618|ref|NP_182273.1| fumarate hydratase, class II [Arabidopsis thaliana] gi|145331433|ref|NP_001078075.1| fumarate hydratase, class II [Arabidopsis thaliana] gi|39931311|sp|P93033.2|FUM1_ARATH RecName: Full=Fumarate hydratase 1, mitochondrial; Short=Fumarase 1; Flags: Precursor gi|2443751|gb|AAB71399.1| fumarase [Arabidopsis thaliana] gi|2529676|gb|AAC62859.1| putative fumarase [Arabidopsis thaliana] gi|15809968|gb|AAL06911.1| At2g47510/T30B22.19 [Arabidopsis thaliana] gi|17064768|gb|AAL32538.1| putative fumarase [Arabidopsis thaliana] gi|28059023|gb|AAO29979.1| putative fumarase [Arabidopsis thaliana] gi|330255758|gb|AEC10852.1| fumarate hydratase, class II [Arabidopsis thaliana] gi|330255759|gb|AEC10853.1| fumarate hydratase, class II [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query423
TAIR|locus:2061966492 FUM1 "fumarase 1" [Arabidopsis 1.0 0.859 0.900 8.8e-205
UNIPROTKB|Q5ZLD1507 FH "Uncharacterized protein" [ 0.995 0.830 0.739 8.7e-166
UNIPROTKB|P07954510 FH "Fumarate hydratase, mitoch 0.995 0.825 0.725 1.3e-164
UNIPROTKB|Q5M964507 Fh "Protein Fh1" [Rattus norve 0.995 0.830 0.720 5.5e-164
UNIPROTKB|Q148D3510 FH "Fumarate hydratase" [Bos t 0.995 0.825 0.727 9e-164
RGD|2614507 Fh "fumarate hydratase" [Rattu 0.995 0.830 0.720 1.2e-163
UNIPROTKB|E2RGR9508 FH "Uncharacterized protein" [ 0.995 0.828 0.722 5e-163
MGI|MGI:95530507 Fh1 "fumarate hydratase 1" [Mu 0.995 0.830 0.720 5e-163
UNIPROTKB|P10173466 FH "Fumarate hydratase, mitoch 0.995 0.903 0.722 1.3e-162
UNIPROTKB|I3LPP1466 FH "Fumarate hydratase, mitoch 0.992 0.901 0.722 3.5e-162
TAIR|locus:2061966 FUM1 "fumarase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1981 (702.4 bits), Expect = 8.8e-205, P = 8.8e-205
 Identities = 381/423 (90%), Positives = 402/423 (95%)

Query:     1 MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 60
             MPEPIVRAFG+LKKCAAKVNMEYGLDP IGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT
Sbjct:    70 MPEPIVRAFGVLKKCAAKVNMEYGLDPTIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 129

Query:    61 QSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLI 120
             QSNMNANEVIANRAAEILG KRGEK VHPNDHVNRSQSSNDTFPTVMHIAAA E NSRLI
Sbjct:   130 QSNMNANEVIANRAAEILGRKRGEKCVHPNDHVNRSQSSNDTFPTVMHIAAATEINSRLI 189

Query:   121 PNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLPR 180
             P+LK LH++L SKS EFKDIVKIGRTHTQDATPLTLGQEF GY TQVKYG++RV C LPR
Sbjct:   190 PSLKTLHSTLESKSFEFKDIVKIGRTHTQDATPLTLGQEFGGYATQVKYGLNRVTCTLPR 249

Query:   181 MYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGAL 240
             +YQLAQGGTAVGTGLNTKKGFDVKIA+AVAEET+LPFVTAENKFEALAAHDA VETSG+L
Sbjct:   250 LYQLAQGGTAVGTGLNTKKGFDVKIAAAVAEETNLPFVTAENKFEALAAHDACVETSGSL 309

Query:   241 NTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVI 300
             NT+A SLMKIAND+R LGSGPRCGLGEL+LPENEPGSSIMPGKVNPTQCEALTMVCAQV+
Sbjct:   310 NTIATSLMKIANDIRFLGSGPRCGLGELVLPENEPGSSIMPGKVNPTQCEALTMVCAQVM 369

Query:   301 GNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKL 360
             GNHVA+TVGGSNGHFELNVFKP+IAS LLHS+RL+ DASASFEKNCVRGI+ANRERISKL
Sbjct:   370 GNHVAVTVGGSNGHFELNVFKPVIASALLHSVRLIADASASFEKNCVRGIEANRERISKL 429

Query:   361 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMIG 420
             LHESLMLVTSLNPKIGYDNAAAVAKKAHKEG TLK+AAL LGVL +EEFD LVVPEKMIG
Sbjct:   430 LHESLMLVTSLNPKIGYDNAAAVAKKAHKEGCTLKEAALNLGVLTAEEFDTLVVPEKMIG 489

Query:   421 PSD 423
             PSD
Sbjct:   490 PSD 492
GO:0003824 "catalytic activity" evidence=IEA
GO:0004333 "fumarate hydratase activity" evidence=IEA;ISS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006099 "tricarboxylic acid cycle" evidence=IEA
GO:0006106 "fumarate metabolic process" evidence=IEA
GO:0016829 "lyase activity" evidence=IEA
GO:0045239 "tricarboxylic acid cycle enzyme complex" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IDA
GO:0009651 "response to salt stress" evidence=IEP
GO:0048868 "pollen tube development" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
UNIPROTKB|Q5ZLD1 FH "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P07954 FH "Fumarate hydratase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5M964 Fh "Protein Fh1" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q148D3 FH "Fumarate hydratase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
RGD|2614 Fh "fumarate hydratase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2RGR9 FH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:95530 Fh1 "fumarate hydratase 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P10173 FH "Fumarate hydratase, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|I3LPP1 FH "Fumarate hydratase, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O25883FUMC_HELPY4, ., 2, ., 1, ., 20.57210.99520.9092yesno
Q9ZCQ4FUMC_RICPR4, ., 2, ., 1, ., 20.64370.99050.9088yesno
Q8UEY7FUMC_AGRT54, ., 2, ., 1, ., 20.63270.99290.9071yesno
Q92PB6FUMC_RHIME4, ., 2, ., 1, ., 20.64300.99520.9092yesno
Q8DIP7FUMC_THEEB4, ., 2, ., 1, ., 20.59000.99290.8993yesno
Q8FX90FUMC_BRUSU4, ., 2, ., 1, ., 20.62880.99520.9092yesno
Q8F9L0FUMC_LEPIN4, ., 2, ., 1, ., 20.64620.99760.9094yesno
P28894FUMC1_BRAJA4, ., 2, ., 1, ., 20.65240.99520.8900yesno
O17214FUMH_CAEEL4, ., 2, ., 1, ., 20.70140.99520.8403yesno
Q9FI53FUM2_ARATH4, ., 2, ., 1, ., 20.89591.00.8476yesno
Q7W4N9FUMC_BORPA4, ., 2, ., 1, ., 20.62380.98810.9028yesno
P08417FUMH_YEAST4, ., 2, ., 1, ., 20.69900.99520.8627yesno
P05042FUMC_ECOLI4, ., 2, ., 1, ., 20.61370.99290.8993N/Ano
Q72VY3FUMC_LEPIC4, ., 2, ., 1, ., 20.64620.99760.9094yesno
Q8Z6R6FUMC_SALTI4, ., 2, ., 1, ., 20.60420.99290.8993N/Ano
Q8ZEB6FUMC_YERPE4, ., 2, ., 1, ., 20.59470.99290.9032yesno
Q4UMT4FUMC_RICFE4, ., 2, ., 1, ., 20.64920.99290.9110yesno
Q92GW0FUMC_RICCN4, ., 2, ., 1, ., 20.63670.99760.9114yesno
P71384FUMC_HAEIN4, ., 2, ., 1, ., 20.59470.99290.9051yesno
Q983U5FUMC_RHILO4, ., 2, ., 1, ., 20.64210.99290.9032yesno
P93033FUM1_ARATH4, ., 2, ., 1, ., 20.90071.00.8597yesno
Q9ZJQ9FUMC_HELPJ4, ., 2, ., 1, ., 20.56260.99520.9092yesno
Q8ZPL7FUMC_SALTY4, ., 2, ., 1, ., 20.60900.99290.8993yesno
P97807FUMH_MOUSE4, ., 2, ., 1, ., 20.72030.99520.8303yesno
Q8XQE8FUMC_RALSO4, ., 2, ., 1, ., 20.59710.99290.9110yesno
Q1RHL6FUMC_RICBR4, ., 2, ., 1, ., 20.63910.99760.9114yesno
Q8KTE1FUMC_METEA4, ., 2, ., 1, ., 20.65240.99520.8919yesno
Q83CL8FUMC_COXBU4, ., 2, ., 1, ., 20.60660.99290.9150yesno
Q55674FUMC_SYNY34, ., 2, ., 1, ., 20.59330.99520.9034N/Ano
Q83ML8FUMC_SHIFL4, ., 2, ., 1, ., 20.61130.99290.8993yesno
Q68W74FUMC_RICTY4, ., 2, ., 1, ., 20.63420.99050.9088yesno
Q7W0A2FUMC_BORPE4, ., 2, ., 1, ., 20.62380.98810.9028yesno
Q8FHA7FUMC_ECOL64, ., 2, ., 1, ., 20.61370.99290.8993yesno
P55250FUMH_RHIOR4, ., 2, ., 1, ., 20.71691.00.8562N/Ano
Q8YB50FUMC_BRUME4, ., 2, ., 1, ., 20.62880.99520.9092yesno
P10173FUMH_PIG4, ., 2, ., 1, ., 20.72270.99520.9034yesno
Q8X769FUMC_ECO574, ., 2, ., 1, ., 20.61370.99290.8993N/Ano
Q7VKC9FUMC_HAEDU4, ., 2, ., 1, ., 20.59470.99290.9051yesno
Q7SX99FUMH_DANRE4, ., 2, ., 1, ., 20.72510.99520.8271yesno
O94552FUMH_SCHPO4, ., 2, ., 1, ., 20.67850.99050.8057yesno
Q7N4H8FUMC_PHOLL4, ., 2, ., 1, ., 20.60420.99290.9051yesno
P07954FUMH_HUMAN4, ., 2, ., 1, ., 20.72510.99520.8254yesno
Q9A6I5FUMC_CAUCR4, ., 2, ., 1, ., 20.65400.99290.9071yesno
Q7WG65FUMC_BORBR4, ., 2, ., 1, ., 20.62380.98810.9028yesno
Q54VA2FUMH_DICDI4, ., 2, ., 1, ., 20.71090.99290.8659yesno
Q60HF9FUMH_MACFA4, ., 2, ., 1, ., 20.72510.99520.8254N/Ano
P14408FUMH_RAT4, ., 2, ., 1, ., 20.72030.99520.8303yesno
Q9CMK1FUMC_PASMU4, ., 2, ., 1, ., 20.60900.99290.9051yesno
P95331FUMC_MYXXD4, ., 2, ., 1, ., 20.58530.99290.9012yesno
Q82SM5FUMC_NITEU4, ., 2, ., 1, ., 20.60.98810.9047yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.983
4th Layer4.2.1.20.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00021795
aspartate ammonia-lyase (EC-4.2.1.2) (490 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_LG_I2224
succinate dehydrogenase (EC-1.3.5.1) (285 aa)
•  • •• 0.994
gw1.VII.3485.1
succinate dehydrogenase (EC-1.3.5.1) (633 aa)
•  • •• 0.958
eugene3.00570187
succinate dehydrogenase (EC-1.3.5.1) (638 aa)
•  • •• 0.957
estExt_Genewise1_v1.C_LG_I4975
malate dehydrogenase (EC-1.1.1.37) (340 aa)
     •• 0.927
estExt_fgenesh4_pg.C_LG_XI0680
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (341 aa)
     •• 0.927
estExt_fgenesh4_pg.C_LG_VII1232
malate dehydrogenase (EC-1.1.1.37) (355 aa)
     •• 0.924
eugene3.00021309
malate dehydrogenase (EC-1.1.1.37) (332 aa)
     •• 0.923
estExt_Genewise1_v1.C_2730019
malate dehydrogenase (EC-1.1.1.37) (332 aa)
     •• 0.923
eugene3.00081537
RecName- Full=Malate dehydrogenase; EC=1.1.1.37; (332 aa)
     •• 0.923
grail3.0001073802
SubName- Full=Putative uncharacterized protein; (354 aa)
     •• 0.921

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
PLN00134458 PLN00134, PLN00134, fumarate hydratase; Provisiona 0.0
PRK00485464 PRK00485, fumC, fumarate hydratase; Reviewed 0.0
cd01362455 cd01362, Fumarase_classII, Class II fumarases 0.0
COG0114462 COG0114, FumC, Fumarase [Energy production and con 0.0
cd01596450 cd01596, Aspartase_like, aspartase (L-aspartate am 0.0
TIGR00979458 TIGR00979, fumC_II, fumarate hydratase, class II 0.0
PRK12273472 PRK12273, aspA, aspartate ammonia-lyase; Provision 0.0
PRK12425464 PRK12425, PRK12425, fumarate hydratase; Provisiona 0.0
cd01357450 cd01357, Aspartase, Aspartase 0.0
PRK13353473 PRK13353, PRK13353, aspartate ammonia-lyase; Provi 1e-173
COG1027471 COG1027, AspA, Aspartate ammonia-lyase [Amino acid 1e-165
TIGR00839468 TIGR00839, aspA, aspartate ammonia-lyase 1e-139
PRK14515479 PRK14515, PRK14515, aspartate ammonia-lyase; Provi 1e-119
pfam00206312 pfam00206, Lyase_1, Lyase 1e-117
cd01334325 cd01334, Lyase_I, Lyase class I family; a group of 1e-117
cd01594231 cd01594, Lyase_I_like, Lyase class I_like superfam 1e-58
pfam1041555 pfam10415, FumaraseC_C, Fumarase C C-terminus 2e-25
cd01595381 cd01595, Adenylsuccinate_lyase_like, Adenylsuccina 1e-22
COG0015438 COG0015, PurB, Adenylosuccinate lyase [Nucleotide 1e-19
cd01597437 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muco 6e-19
TIGR00928435 TIGR00928, purB, adenylosuccinate lyase 1e-16
PRK08540449 PRK08540, PRK08540, adenylosuccinate lyase; Review 4e-16
cd01360387 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate 4e-15
PRK06390451 PRK06390, PRK06390, adenylosuccinate lyase; Provis 5e-13
PRK09053452 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cyc 6e-12
TIGR00838455 TIGR00838, argH, argininosuccinate lyase 1e-11
TIGR02426338 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-mucona 1e-09
COG0165459 COG0165, ArgH, Argininosuccinate lyase [Amino acid 1e-08
cd01359435 cd01359, Argininosuccinate_lyase, Argininosuccinat 6e-08
PLN02646474 PLN02646, PLN02646, argininosuccinate lyase 1e-07
cd01598425 cd01598, PurB, PurB_like adenylosuccinases (adenyl 1e-07
cd03302436 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate 7e-07
PRK07380431 PRK07380, PRK07380, adenylosuccinate lyase; Provis 8e-07
PRK08937216 PRK08937, PRK08937, adenylosuccinate lyase; Provis 3e-06
PRK07492435 PRK07492, PRK07492, adenylosuccinate lyase; Provis 5e-06
PRK06705502 PRK06705, PRK06705, argininosuccinate lyase; Provi 1e-05
PRK09285456 PRK09285, PRK09285, adenylosuccinate lyase; Provis 3e-04
PRK12308 614 PRK12308, PRK12308, bifunctional argininosuccinate 9e-04
PLN02848458 PLN02848, PLN02848, adenylosuccinate lyase 0.002
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional Back     alignment and domain information 
 Score =  838 bits (2167), Expect = 0.0
 Identities = 371/425 (87%), Positives = 389/425 (91%), Gaps = 2/425 (0%)

Query: 1   MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
           MPEPIVRAFGI+KK AAKVNMEYG LDP IGKAIMQAA EVAEGKL+DHFPLVVWQTGSG
Sbjct: 32  MPEPIVRAFGIVKKAAAKVNMEYGLLDPDIGKAIMQAADEVAEGKLDDHFPLVVWQTGSG 91

Query: 60  TQSNMNANEVIANRAAEILGHKRGEK-IVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSR 118
           TQ+NMNANEVIANRAAEILG   GEK  VHPNDHVNRSQSSNDTFPT MHIAAA E +SR
Sbjct: 92  TQTNMNANEVIANRAAEILGGPVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSR 151

Query: 119 LIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCL 178
           LIP LK LH SL +KS EFKDIVKIGRTH QDA PLTLGQEFSGY TQVKYG++RV C L
Sbjct: 152 LIPALKELHESLRAKSFEFKDIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRVQCTL 211

Query: 179 PRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG 238
           PR+Y+LAQGGTAVGTGLNTKKGFD KIA+AVAEET LPFVTA NKFEALAAHDAFVE SG
Sbjct: 212 PRLYELAQGGTAVGTGLNTKKGFDEKIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSG 271

Query: 239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQ 298
           ALNTVA SLMKIAND+RLLGSGPRCGLGEL LPENEPGSSIMPGKVNPTQCEALTMVCAQ
Sbjct: 272 ALNTVAVSLMKIANDIRLLGSGPRCGLGELNLPENEPGSSIMPGKVNPTQCEALTMVCAQ 331

Query: 299 VIGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERIS 358
           V+GNHVAITVGGS GHFELNVFKP+IA  LLHS+RLLGDASASF KNCVRGI+ANRERIS
Sbjct: 332 VMGNHVAITVGGSAGHFELNVFKPLIAYNLLHSIRLLGDASASFRKNCVRGIEANRERIS 391

Query: 359 KLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKM 418
           KLLHESLMLVT+LNPKIGYD AAAVAKKAHKEGTTLK+AALKLGVL +EEFD LVVPEKM
Sbjct: 392 KLLHESLMLVTALNPKIGYDKAAAVAKKAHKEGTTLKEAALKLGVLTAEEFDELVVPEKM 451

Query: 419 IGPSD 423
            GPSD
Sbjct: 452 TGPSD 456

Length = 458
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed Back     alignment and domain information
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases Back     alignment and domain information
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II Back     alignment and domain information
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional Back     alignment and domain information
>gnl|CDD|176462 cd01357, Aspartase, Aspartase Back     alignment and domain information
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase Back     alignment and domain information
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional Back     alignment and domain information
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase Back     alignment and domain information
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>gnl|CDD|204481 pfam10415, FumaraseC_C, Fumarase C C-terminus Back     alignment and domain information
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase Back     alignment and domain information
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed Back     alignment and domain information
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase Back     alignment and domain information
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional Back     alignment and domain information
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>gnl|CDD|178440 PLN02848, PLN02848, adenylosuccinate lyase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 423
PLN00134458 fumarate hydratase; Provisional 100.0
PRK12425464 fumarate hydratase; Provisional 100.0
TIGR00979458 fumC_II fumarate hydratase, class II. Putative fum 100.0
PRK00485464 fumC fumarate hydratase; Reviewed 100.0
PRK13353473 aspartate ammonia-lyase; Provisional 100.0
PRK14515479 aspartate ammonia-lyase; Provisional 100.0
PRK12273472 aspA aspartate ammonia-lyase; Provisional 100.0
cd01357450 Aspartase Aspartase. This subgroup contains Escher 100.0
TIGR00839468 aspA aspartate ammonia-lyase. Fumarate hydratase s 100.0
cd01362455 Fumarase_classII Class II fumarases. This subgroup 100.0
COG0114462 FumC Fumarase [Energy production and conversion] 100.0
cd01596450 Aspartase_like aspartase (L-aspartate ammonia-lyas 100.0
COG1027471 AspA Aspartate ammonia-lyase [Amino acid transport 100.0
COG0165459 ArgH Argininosuccinate lyase [Amino acid transport 100.0
PRK09053452 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 100.0
PLN02646474 argininosuccinate lyase 100.0
TIGR00838455 argH argininosuccinate lyase. This model describes 100.0
PRK06705502 argininosuccinate lyase; Provisional 100.0
PRK07492435 adenylosuccinate lyase; Provisional 100.0
cd01597437 pCLME prokaryotic 3-carboxy-cis,cis-muconate cyclo 100.0
PRK08470442 adenylosuccinate lyase; Provisional 100.0
cd01359435 Argininosuccinate_lyase Argininosuccinate lyase (a 100.0
PRK00855459 argininosuccinate lyase; Provisional 100.0
PRK07380431 adenylosuccinate lyase; Provisional 100.0
TIGR00928435 purB adenylosuccinate lyase. This family consists 100.0
PRK08540449 adenylosuccinate lyase; Reviewed 100.0
COG0015438 PurB Adenylosuccinate lyase [Nucleotide transport 100.0
PRK04833455 argininosuccinate lyase; Provisional 100.0
KOG1317487 consensus Fumarase [Energy production and conversi 100.0
cd03302436 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL 100.0
PRK06390451 adenylosuccinate lyase; Provisional 100.0
cd01595381 Adenylsuccinate_lyase_like Adenylsuccinate lyase ( 100.0
PRK12308 614 bifunctional argininosuccinate lyase/N-acetylgluta 100.0
cd01360387 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL 100.0
PRK02186887 argininosuccinate lyase; Provisional 100.0
KOG1316464 consensus Argininosuccinate lyase [Amino acid tran 100.0
TIGR02426338 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisom 100.0
cd01334325 Lyase_I Lyase class I family; a group of proteins 100.0
PRK06389434 argininosuccinate lyase; Provisional 100.0
PRK09285456 adenylosuccinate lyase; Provisional 100.0
cd01598425 PurB PurB_like adenylosuccinases (adenylsuccinate 100.0
PRK05975351 3-carboxy-cis,cis-muconate cycloisomerase; Provisi 100.0
PLN02848458 adenylosuccinate lyase 100.0
PF00206312 Lyase_1: Lyase; InterPro: IPR022761 This entry rep 100.0
KOG2700481 consensus Adenylosuccinate lyase [Nucleotide trans 100.0
cd01594231 Lyase_I_like Lyase class I_like superfamily: conta 100.0
PRK08937216 adenylosuccinate lyase; Provisional 99.97
PF1041555 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR0 98.68
PF1039781 ADSL_C: Adenylosuccinate lyase C-terminus; InterPr 98.18
PF1469870 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1 96.39
PF08328115 ASL_C: Adenylosuccinate lyase C-terminal; InterPro 96.38
KOG2700481 consensus Adenylosuccinate lyase [Nucleotide trans 94.11
>PLN00134 fumarate hydratase; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.3e-97  Score=761.10  Aligned_cols=423  Identities=88%  Similarity=1.271  Sum_probs=406.7

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhC
Q 014483            1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG   79 (423)
Q Consensus         1 ~~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g   79 (423)
                      +|+++|++|+.|++||+.++.+.| ||++++++|.++|+++.++...++|+++++|++.+++.++++|+|||+++++.+|
T Consensus        32 ~~~~~i~a~~~v~~A~a~~l~~~G~l~~~~a~~I~~al~ei~~~~~~~~f~~~~~~~g~g~~~~~~v~evie~~l~e~~g  111 (458)
T PLN00134         32 MPEPIVRAFGIVKKAAAKVNMEYGLLDPDIGKAIMQAADEVAEGKLDDHFPLVVWQTGSGTQTNMNANEVIANRAAEILG  111 (458)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHcCcccCCccccccccCCcccccCcHHHHHHHHHHHHhC
Confidence            578999999999999999999999 9999999999999999987777899999999999999999999999999999999


Q ss_pred             ccCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhH
Q 014483           80 HKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQ  158 (423)
Q Consensus        80 ~~~g~~~-~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~  158 (423)
                      ++.|+|. +||++|||+|+||||+++|+++|+++++++..+.+.|..|+++|.++|++|+||+||||||+|+||||||||
T Consensus       112 ~~~g~~~~lHp~d~vh~G~S~nDiv~Ta~~L~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~  191 (458)
T PLN00134        112 GPVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFKDIVKIGRTHLQDAVPLTLGQ  191 (458)
T ss_pred             cccCCccccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCeeecHHH
Confidence            7788775 999999999999999999999999887777899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHH
Q 014483          159 EFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG  238 (423)
Q Consensus       159 ~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~  238 (423)
                      |+++|+++|.|+++||.+++++++.+||||||+||++++++.|+.++++++++.|||+.++.+|++|++++||+++++++
T Consensus       192 ~~~~~~~~l~r~~~RL~~~~~~~~~~~lGg~AvGT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~  271 (458)
T PLN00134        192 EFSGYATQVKYGLNRVQCTLPRLYELAQGGTAVGTGLNTKKGFDEKIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSG  271 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeecCCccCChhHHHHHHHHHHHHhCCCCCCCccHHHHhcCCHHHHHHHH
Confidence            99999999999999999999999999999988999999999999999999999999998778999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCcccccc
Q 014483          239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN  318 (423)
Q Consensus       239 ~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~~  318 (423)
                      +++.++++|+|||+||++|+|+||+||||+.+|+.++|||||||||||+.+|.++++|+++.|++.+++.....++++.+
T Consensus       272 ~l~~la~~L~kia~Dl~llss~p~~e~gev~lp~~~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~  351 (458)
T PLN00134        272 ALNTVAVSLMKIANDIRLLGSGPRCGLGELNLPENEPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFELN  351 (458)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccccCCcceEECCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhh
Confidence            99999999999999999999999999999999988899999999999999999999999999999999876778888887


Q ss_pred             cchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccccHHHHHHHHHHHHHcCCCHHHHH
Q 014483          319 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAA  398 (423)
Q Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~g~~~a~~~~~~a~~~g~~l~e~~  398 (423)
                      ..++++.|.++++++.+.+++..++..|+++|+||++||++|++.+++++++|++++||+.|+++++++.++|++++|++
T Consensus       352 ~~~~~i~~~~l~~~~~~~~~~~~~~~~~l~~l~vn~erm~~~l~~~~~l~~~La~~ig~~~A~~~~~~a~~~g~~l~e~~  431 (458)
T PLN00134        352 VFKPLIAYNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLVTALNPKIGYDKAAAVAKKAHKEGTTLKEAA  431 (458)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccchHHHhhhccCHHHHHHHHHHHHHhCCCHHHHH
Confidence            77888889999999999999999988999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCHHHHhhccCcccccCCCC
Q 014483          399 LKLGVLNSEEFDNLVVPEKMIGPSD  423 (423)
Q Consensus       399 ~~~~~l~~~~l~~~~dp~~~~g~~~  423 (423)
                      .+.+.++++++++++||.+|+|++|
T Consensus       432 ~~~~~l~~~el~~~ldP~~~~~~~~  456 (458)
T PLN00134        432 LKLGVLTAEEFDELVVPEKMTGPSD  456 (458)
T ss_pred             HhcCCCCHHHHHHHcCHHHhcCCCC
Confidence            9989999999999999999999876

>PRK12425 fumarate hydratase; Provisional Back     alignment and domain information
>TIGR00979 fumC_II fumarate hydratase, class II Back     alignment and domain information
>PRK00485 fumC fumarate hydratase; Reviewed Back     alignment and domain information
>PRK13353 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>PRK14515 aspartate ammonia-lyase; Provisional Back     alignment and domain information
>PRK12273 aspA aspartate ammonia-lyase; Provisional Back     alignment and domain information
>cd01357 Aspartase Aspartase Back     alignment and domain information
>TIGR00839 aspA aspartate ammonia-lyase Back     alignment and domain information
>cd01362 Fumarase_classII Class II fumarases Back     alignment and domain information
>COG0114 FumC Fumarase [Energy production and conversion] Back     alignment and domain information
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes Back     alignment and domain information
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism] Back     alignment and domain information
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>PLN02646 argininosuccinate lyase Back     alignment and domain information
>TIGR00838 argH argininosuccinate lyase Back     alignment and domain information
>PRK06705 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK07492 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like Back     alignment and domain information
>PRK08470 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL) Back     alignment and domain information
>PRK00855 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK07380 adenylosuccinate lyase; Provisional Back     alignment and domain information
>TIGR00928 purB adenylosuccinate lyase Back     alignment and domain information
>PRK08540 adenylosuccinate lyase; Reviewed Back     alignment and domain information
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK04833 argininosuccinate lyase; Provisional Back     alignment and domain information
>KOG1317 consensus Fumarase [Energy production and conversion] Back     alignment and domain information
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2 Back     alignment and domain information
>PRK06390 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like Back     alignment and domain information
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional Back     alignment and domain information
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1 Back     alignment and domain information
>PRK02186 argininosuccinate lyase; Provisional Back     alignment and domain information
>KOG1316 consensus Argininosuccinate lyase [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase Back     alignment and domain information
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions Back     alignment and domain information
>PRK06389 argininosuccinate lyase; Provisional Back     alignment and domain information
>PRK09285 adenylosuccinate lyase; Provisional Back     alignment and domain information
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL) Back     alignment and domain information
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional Back     alignment and domain information
>PLN02848 adenylosuccinate lyase Back     alignment and domain information
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F Back     alignment and domain information
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions Back     alignment and domain information
>PRK08937 adenylosuccinate lyase; Provisional Back     alignment and domain information
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle Back     alignment and domain information
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) [] Back     alignment and domain information
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B Back     alignment and domain information
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli) Back     alignment and domain information
>KOG2700 consensus Adenylosuccinate lyase [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
3e04_A490 Crystal Structure Of Human Fumarate Hydratase Lengt 0.0
1yfm_A488 Recombinant Yeast Fumarase Length = 488 1e-167
3gtd_A482 2.4 Angstrom Crystal Structure Of Fumarate Hydratas 1e-157
4hgv_A495 Crystal Structure Of A Fumarate Hydratase Length = 1e-150
3tv2_A459 Structure Of A Class Ii Fumarate Hydratase From Bur 1e-149
1fuo_A467 Fumarase C With Bound Citrate Length = 467 1e-144
1fup_A472 Fumarase With Bound Pyromellitic Acid Length = 472 1e-143
1kq7_A467 E315q Mutant Form Of Fumarase C From E.Coli Length 1e-143
1fur_A467 Fumarase Mutant H188n With Bound Substrate L-Malate 1e-143
2fus_A467 Mutations Of Fumarase That Distinguish Between The 1e-143
1vdk_A466 Crystal Structure Of Fumarase From Thermus Thermoph 1e-134
3qbp_A478 Crystal Structure Of Fumarase Fum From Mycobacteriu 1e-111
4adl_A495 Crystal Structures Of Rv1098c In Complex With Malat 1e-109
3no9_A475 Crystal Structure Of Apo Fumarate Hydratase From My 1e-109
4apa_A474 Crystal Structure Of Mycobacterium Tuberculosis Fum 1e-109
4apb_A474 Crystal Structure Of Mycobacterium Tuberculosis Fum 1e-109
3rd8_A489 Crystal Structure Of Fumarate Hydratase Class Ii My 1e-108
3rrp_A471 Crystal Structure Of Fumarate Hydratase Fum From My 1e-101
1j3u_A468 Crystal Structure Of Aspartase From Bacillus Sp. Ym 7e-98
3oce_A474 Crystal Structure Of Fumarate Lyase:delta Crystalli 1e-83
3r6y_A401 Crystal Structure Of Chymotrypsin-Treated Aspartase 1e-83
3ocf_A478 Crystal Structure Of Fumarate Lyase:delta Crystalli 1e-83
1jsw_A478 Native L-Aspartate Ammonia Lyase Length = 478 1e-81
3c8t_A451 Crystal Structure Of Fumarate Lyase From Mesorhizob 5e-10
1re5_A450 Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate Lac 5e-09
4eei_A438 Crystal Structure Of Adenylosuccinate Lyase From Fr 2e-08
2e9f_A462 Crystal Structure Of T.th.hb8 Argininosuccinate Lya 9e-07
1q5n_A454 Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate 1e-06
2qga_B465 Plasmodium Vivax Adenylosuccinate Lyase Pv003765 Wi 2e-06
1f1o_A431 Structural Studies Of Adenylosuccinate Lyases Lengt 9e-06
2hvg_A482 Crystal Structure Of Adenylosuccinate Lyase From Pl 1e-05
1c3c_A429 T. Maritima Adenylosuccinate Lyase Length = 429 2e-05
1c3u_A431 T. Maritima Adenylosuccinate Lyase Length = 431 2e-05
1dof_A403 The Crystal Structure Of Adenylosuccinate Lyase Fro 5e-05
3gzh_A482 Crystal Structure Of Phosphate-Bound Adenylosuccina 2e-04
1tj7_A457 Structure Determination And Refinement At 2.44 A Re 3e-04
2pfm_A444 Crystal Structure Of Adenylosuccinate Lyase (Purb) 8e-04
2x75_A431 Staphylococcus Aureus Adenylosuccinate Lyase Length 8e-04
4efc_A472 Crystal Structure Of Adenylosuccinate Lyase From Tr 8e-04
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase Length = 490 Back     alignment and structure 
Iteration: 1

 Score =  635 bits (1639), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/422 (72%), Positives = 355/422 (84%), Gaps = 1/422 (0%)
Query: 1   MPEPIVRAFGILKKCAAKVNMEYGLDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGT 60
           MP P+++AFGILK+ AA+VN +YGLDP I  AIM+AA EVAEGKLNDHFPLVVWQTGSGT
Sbjct: 68  MPTPVIKAFGILKRAAAEVNQDYGLDPKIANAIMKAADEVAEGKLNDHFPLVVWQTGSGT 127
Query: 61  QSNMNANEVIANRAAEILGHKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
           Q+NMN NEVI+NRA E+LG + G KI VHPNDHVN+SQSSNDTFPT MHIAAA+E +  L
Sbjct: 128 QTNMNVNEVISNRAIEMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVL 187
Query: 120 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 179
           +P L+ LH++L +KS EF  I+KIGRTHTQDA PLTLGQEFSGY  QVKY + R+   +P
Sbjct: 188 LPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMP 247
Query: 180 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239
           R+Y+LA GGTAVGTGLNT+ GF  K+A+ VA  T LPFVTA NKFEALAAHDA VE SGA
Sbjct: 248 RIYELAAGGTAVGTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGA 307
Query: 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 299
           +NT A SLMKIAND+R LGSGPR GLGELILPENEPGSSIMPGKVNPTQCEA+TMV AQV
Sbjct: 308 MNTTACSLMKIANDIRFLGSGPRSGLGELILPENEPGSSIMPGKVNPTQCEAMTMVAAQV 367
Query: 300 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
           +GNHVA+TVGGSNGHFELNVFKPM+   +LHS RLLGDAS SF +NCV GIQAN ERI+K
Sbjct: 368 MGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINK 427
Query: 360 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 419
           L++ESLMLVT+LNP IGYD AA +AK AHK G+TLK+ A++LG L +E+FD  V P+ M+
Sbjct: 428 LMNESLMLVTALNPHIGYDKAAKIAKTAHKNGSTLKETAIELGYLTAEQFDEWVKPKDML 487
Query: 420 GP 421
           GP
Sbjct: 488 GP 489
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase Length = 488 Back     alignment and structure
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From Rickettsia Prowazekii Length = 482 Back     alignment and structure
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase Length = 495 Back     alignment and structure
>pdb|3TV2|A Chain A, Structure Of A Class Ii Fumarate Hydratase From Burkholderia Pseudomallei Length = 459 Back     alignment and structure
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate Length = 467 Back     alignment and structure
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid Length = 472 Back     alignment and structure
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli Length = 467 Back     alignment and structure
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At Putative Activator Site Length = 467 Back     alignment and structure
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active Site And A Nearby Dicarboxylic Acid Binding Site Length = 467 Back     alignment and structure
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus Hb8 Length = 466 Back     alignment and structure
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium Marinum Length = 478 Back     alignment and structure
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate Length = 495 Back     alignment and structure
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From Mycobacterium Tuberculosis Length = 475 Back     alignment and structure
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (Rv1098c) S318a In Apo Form Length = 474 Back     alignment and structure
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase ( Rv1098c) S318c In Complex With Fumarate Length = 474 Back     alignment and structure
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii Mycobacterium Smegmatis Length = 489 Back     alignment and structure
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From Mycobacterium Abscessus With Malate Bound Length = 471 Back     alignment and structure
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1 Length = 468 Back     alignment and structure
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From Brucella Melitensis Bound To Cobalt Length = 474 Back     alignment and structure
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From Bacillus Sp. Ym55-1 Length = 401 Back     alignment and structure
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From Brucella Melitensis In Native Form Length = 478 Back     alignment and structure
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase Length = 478 Back     alignment and structure
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp. Bnc1 Length = 451 Back     alignment and structure
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From Pseudomonas Putida Length = 450 Back     alignment and structure
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Francisella Tularensis Complexed With Amp And Succinate Length = 438 Back     alignment and structure
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase Complexed With L-arginine Length = 462 Back     alignment and structure
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus Sp. Adp1 Length = 454 Back     alignment and structure
>pdb|2QGA|B Chain B, Plasmodium Vivax Adenylosuccinate Lyase Pv003765 With Amp Bound Length = 465 Back     alignment and structure
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases Length = 431 Back     alignment and structure
>pdb|2HVG|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Plasmodium Vivax Length = 482 Back     alignment and structure
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 429 Back     alignment and structure
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase Length = 431 Back     alignment and structure
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From Pyrobaculum Aerophilum: Insights Into Thermal Stability And Human Pathology Length = 403 Back     alignment and structure
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate Lyase From E. Coli Length = 482 Back     alignment and structure
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A Resolution Of Argininosuccinate Lyase From E. Coli Length = 457 Back     alignment and structure
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From Bacillus Anthracis Length = 444 Back     alignment and structure
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase Length = 431 Back     alignment and structure
>pdb|4EFC|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From Trypanosoma Brucei, Tb427tmp.160.5560 Length = 472 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query423
1vdk_A466 Fumarase C, fumarate hydratase class II; TCA cycle 0.0
1yfm_A488 Fumarase, YFUM; lyase, krebs cycle, active site wa 0.0
3e04_A490 Fumarase, fumarate hydratase; TCA cycle, structura 0.0
1fur_A467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 0.0
3gtd_A482 Fumarase C, fumarate hydratase class II; structura 0.0
4adm_A495 Fumarase C, fumarate hydratase class II; lyase, tr 0.0
3r6q_A468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 0.0
1jsw_A478 L-aspartase, L-aspartate ammonia-lyase; amino acid 0.0
3ocf_A478 Fumarate lyase:delta crystallin; fumarase, brucell 0.0
1q5n_A454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 1e-27
1re5_A450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 4e-27
3c8t_A451 Fumarate lyase; structural genomics, PSI-2, protei 6e-27
2pfm_A444 Adenylosuccinate lyase; PURB, purine biosynthesis, 3e-23
1c3c_A429 Protein (adenylosuccinate lyase); purine biosynthe 4e-22
2fel_A359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 2e-20
1dof_A403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 8e-19
4eei_A438 Adenylosuccinate lyase; structural genomics, niaid 2e-18
3bhg_A459 Adenylosuccinate lyase; structural G PSI-2, protei 3e-14
1yis_A478 Adenylosuccinate lyase; structural genomics, PSI, 3e-14
2ptr_A462 Adenylosuccinate lyase; mutant-substrate complex; 4e-14
2j91_A503 Adenylosuccinate lyase; disease mutation, adenylos 5e-14
2qga_B465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 4e-13
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-07
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Length = 466 Back     alignment and structure
 Score =  857 bits (2216), Expect = 0.0
 Identities = 238/424 (56%), Positives = 296/424 (69%), Gaps = 1/424 (0%)

Query: 1   MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
           MP  I+RA+G+LKK AA+ N+E G L   I KAI+QAA+EV +GK +DHFPLVV+QTGSG
Sbjct: 41  MPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQAAEEVVQGKWDDHFPLVVFQTGSG 100

Query: 60  TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
           TQ+NMN NEVIANRA+EILG   G K  HPNDHVNR QSSNDTFPT M++A A+  + RL
Sbjct: 101 TQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRL 160

Query: 120 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 179
            P ++ L  +  +K+  F  IVK+GRTH  DA P+TLGQE   +  Q+K  +  V     
Sbjct: 161 YPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEK 220

Query: 180 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239
            +Y LA GGTAVGTGLN    F   +A  +AEET LPF  AEN+F ALAAHD  V   GA
Sbjct: 221 GLYNLAIGGTAVGTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGA 280

Query: 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 299
           + T+A +LMKI NDVR L SGP  G+GE+ +P NEPGSSIMPGKVNPTQ EALTMV  +V
Sbjct: 281 IRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRV 340

Query: 300 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
            GN   +   GS G+F+LNV+KP++A   L S+ LL DA ASF+ +  +GI+ N ERI +
Sbjct: 341 YGNDHTVAFAGSQGNFQLNVYKPVMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEE 400

Query: 360 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 419
            L ++ ML T+LN  IGYD AA + KKA KE  TLK AAL+LG L  EEFD +VVP ++ 
Sbjct: 401 YLQKNPMLATALNKAIGYDKAAEIVKKALKEKKTLKQAALELGYLTEEEFDRIVVPMRLA 460

Query: 420 GPSD 423
            P +
Sbjct: 461 KPHE 464
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Length = 488 Back     alignment and structure
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Length = 490 Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Length = 467 Back     alignment and structure
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Length = 482 Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Length = 495 Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB: 1j3u_A 3r6v_A 3r6y_A Length = 468 Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Length = 478 Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Length = 478 Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Length = 454 Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Length = 450 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Length = 451 Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Length = 444 Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Length = 429 Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Length = 359 Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Length = 403 Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Length = 438 Back     alignment and structure
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Length = 459 Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Length = 478 Back     alignment and structure
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Length = 462 Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Length = 503 Back     alignment and structure
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Length = 465 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
3gtd_A482 Fumarase C, fumarate hydratase class II; structura 100.0
3e04_A490 Fumarase, fumarate hydratase; TCA cycle, structura 100.0
3r6q_A468 Aspartase; aspartate ammonia lyase, lyase; 2.40A { 100.0
1yfm_A488 Fumarase, YFUM; lyase, krebs cycle, active site wa 100.0
3ocf_A478 Fumarate lyase:delta crystallin; fumarase, brucell 100.0
1fur_A467 Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, 100.0
4adm_A495 Fumarase C, fumarate hydratase class II; lyase, tr 100.0
1jsw_A478 L-aspartase, L-aspartate ammonia-lyase; amino acid 100.0
1vdk_A466 Fumarase C, fumarate hydratase class II; TCA cycle 100.0
4hgv_A495 Fumarase C, fumarate hydratase class II; nysgrc, P 100.0
1q5n_A454 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, a 100.0
3c8t_A451 Fumarate lyase; structural genomics, PSI-2, protei 100.0
2pfm_A444 Adenylosuccinate lyase; PURB, purine biosynthesis, 100.0
1c3c_A429 Protein (adenylosuccinate lyase); purine biosynthe 100.0
1re5_A450 3-carboxy-CIS,CIS-muconate cycloisomerase; homotet 100.0
2e9f_A462 Argininosuccinate lyase; alpha helix bundle; HET: 100.0
1k7w_A468 Delta 2 crystallin; eye lens protein, argininosucc 100.0
1tj7_A457 Argininosuccinate lyase; crystallin, E. coli, fuma 100.0
1dof_A403 Adenylosuccinate lyase; purine biosynthesis; 2.10A 100.0
4eei_A438 Adenylosuccinate lyase; structural genomics, niaid 100.0
2ptr_A462 Adenylosuccinate lyase; mutant-substrate complex; 100.0
1yis_A478 Adenylosuccinate lyase; structural genomics, PSI, 100.0
2j91_A503 Adenylosuccinate lyase; disease mutation, adenylos 100.0
2fel_A359 3-carboxy-CIS,CIS-muconate lactonizing enzyme; bio 100.0
2qga_B465 Adenylosuccinate lyase; malaria, PV003765, SGC, st 100.0
3bhg_A459 Adenylosuccinate lyase; structural G PSI-2, protei 100.0
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii} Back     alignment and structure
Probab=100.00  E-value=1.6e-100  Score=781.13  Aligned_cols=420  Identities=65%  Similarity=0.993  Sum_probs=404.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhC
Q 014483            1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG   79 (423)
Q Consensus         1 ~~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g   79 (423)
                      +|+++|++|+.||+|+|.++.+.| ||++.+++|.++|++|.++..+++||++.+|+|++|+.|||+||||++++.+++|
T Consensus        61 ~~~~~i~a~~~vk~AaA~an~~~G~l~~~~a~aI~~a~~ev~~g~~~~~fp~~~~q~gsGt~~Nmn~NevIa~ra~e~~G  140 (482)
T 3gtd_A           61 MPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKAIDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASIANEELT  140 (482)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTTTTTSCCCBSSSCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCcccCCCeehhccCCCccccchHHHHHHHHHHHHhC
Confidence            589999999999999999999999 9999999999999999998888999999999999999999999999999999999


Q ss_pred             ccCCCcc-cccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhH
Q 014483           80 HKRGEKI-VHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQ  158 (423)
Q Consensus        80 ~~~g~~~-~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~  158 (423)
                      .+.|+|. +|+++|||+||||||+++|+++|++++++.+.|.+.|..|+++|.++|++|+|++||||||+|+||||||||
T Consensus       141 ~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~  220 (482)
T 3gtd_A          141 GKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQ  220 (482)
T ss_dssp             SCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHH
T ss_pred             cccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHH
Confidence            8888874 799999999999999999999999987765689999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHH
Q 014483          159 EFSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSG  238 (423)
Q Consensus       159 ~~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~  238 (423)
                      ||++|+++|.|+++||.+++++++.+||||||+||+++++++|+..+.+++++.|||+.++.+|++|++++||+++++++
T Consensus       221 ~~~~~~~~l~rd~~RL~~~~~~l~~~~lGgtAvGT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~  300 (482)
T 3gtd_A          221 EFSGYITQIEYALERIEDALKKVYLLAQGGTAVGTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSG  300 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccccCCCcCCchhHHHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHH
Confidence            99999999999999999999999999999988999999999999999999999999998778999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCcccccc
Q 014483          239 ALNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELN  318 (423)
Q Consensus       239 ~l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~~  318 (423)
                      +|+.++++|+|||+||++|+|+||+||||+.+|++++|||||||||||+.+|.++++|++++|+.+++.....++++|++
T Consensus       301 ~L~~la~~L~Kia~DlrllsSgpr~g~gEi~lp~~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln  380 (482)
T 3gtd_A          301 TLNTIAVSLMKIANDIRLLGSGPRCGLGELHLPENEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSNGHLELN  380 (482)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTCCBTTBC
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCccCeeEEECCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcccchhc
Confidence            99999999999999999999999999999999988999999999999999999999999999999999888889999999


Q ss_pred             cchhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccccHHHHHHHHHHHHHcCCCHHHHH
Q 014483          319 VFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAA  398 (423)
Q Consensus       319 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~g~~~a~~~~~~a~~~g~~l~e~~  398 (423)
                      .++|++.|+++++++++.+++..++..|+++|+||++||+++++++++++|+|++++||+.|++++++|.++|++++|++
T Consensus       381 ~~~pl~~~~~l~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lvTaLa~~iGy~~a~~ia~~A~~~g~~l~e~~  460 (482)
T 3gtd_A          381 VFKPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHIGYDNAAKIAKEAHKYGITLKEAA  460 (482)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEECHHHHHHHHHHCGGGHHHHHHHHCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhhhHHHHHhhhHHHHHHHHHHHHHHHHhCCCHHHHH
Confidence            99999999999999999999999998999999999999999999999999999999999999999999999999999999


Q ss_pred             HHcCCCCHHHHhhccCcccccC
Q 014483          399 LKLGVLNSEEFDNLVVPEKMIG  420 (423)
Q Consensus       399 ~~~~~l~~~~l~~~~dp~~~~g  420 (423)
                      .+.+.+++++++++|||.+++|
T Consensus       461 ~~~~~ls~eeld~~ldP~~~~g  482 (482)
T 3gtd_A          461 KKLNFLSEEEFDKIVVPEKMIS  482 (482)
T ss_dssp             HHTTSCCHHHHHHHHSCC----
T ss_pred             HHcCCCCHHHHHHHcCHHHhcC
Confidence            9999999999999999999987
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens} Back     alignment and structure
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A Back     alignment and structure
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1 Back     alignment and structure
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A Back     alignment and structure
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A Back     alignment and structure
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A Back     alignment and structure
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1 Back     alignment and structure
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti} Back     alignment and structure
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1 Back     alignment and structure
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP} Back     alignment and structure
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A* Back     alignment and structure
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A Back     alignment and structure
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1 Back     alignment and structure
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus} Back     alignment and structure
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A Back     alignment and structure
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1 Back     alignment and structure
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1 Back     alignment and structure
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp} Back     alignment and structure
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A Back     alignment and structure
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans} Back     alignment and structure
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A* Back     alignment and structure
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A Back     alignment and structure
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A Back     alignment and structure
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 423
d1yfma_459 a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomy 1e-147
d1fuoa_456 a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 1e-137
d1vdka_460 a.127.1.1 (A:) Fumarase {Thermus thermophilus [Tax 1e-134
d1j3ua_462 a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus 1e-110
d1jswa_459 a.127.1.1 (A:) L-aspartate ammonia lyase {Escheric 1e-104
d1re5a_448 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 2e-49
d1c3ca_429 a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga 6e-43
d1q5na_444 a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloiso 1e-42
d1k62b_459 a.127.1.1 (B:) Argininosuccinate lyase/delta-cryst 5e-37
d1tj7a_455 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 1e-36
d1tjva_449 a.127.1.1 (A:) Argininosuccinate lyase/delta-cryst 1e-33
d1dofa_402 a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Py 4e-33
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 459 Back     information, alignment and structure

class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  423 bits (1088), Expect = e-147
 Identities = 292/420 (69%), Positives = 335/420 (79%), Gaps = 1/420 (0%)

Query: 1   MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSG 59
           MP P+V AFG+LKK AA VN   G LDP I KAI QAA EVA GKL+DHFPLVV+QTGSG
Sbjct: 40  MPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSG 99

Query: 60  TQSNMNANEVIANRAAEILGHKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRL 119
           TQSNMNANEVI+NRA EILG K G K VHPN+H N+SQSSNDTFPTVMHIAA+++  + L
Sbjct: 100 TQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNEL 159

Query: 120 IPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQEFSGYTTQVKYGIDRVICCLP 179
           IP L  L N+L +KS EF  IVKIGRTH QDATPLTLGQEFSGY  QV+ GI RV   L 
Sbjct: 160 IPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLK 219

Query: 180 RMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA 239
            +  LAQGGTAVGTGLNTK GFDVKIA  +++ET L F TA N+FEALAAHDA VE SGA
Sbjct: 220 TLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGA 279

Query: 240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQV 299
           LNT+A SL KIA D+R LGSGPRCG  EL+LPENEPGSSIMPGKVNPTQ EALT VC QV
Sbjct: 280 LNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQV 339

Query: 300 IGNHVAITVGGSNGHFELNVFKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISK 359
           +GN+ AIT  GS G FELNVFKP++ + LL+S+RL+ DA+ SF  +CV GI+AN  RI +
Sbjct: 340 MGNNAAITFAGSQGQFELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHE 399

Query: 360 LLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAALKLGVLNSEEFDNLVVPEKMI 419
           LL +SLMLVT+LNPKIGYD A+ VAK AHK+G TLK++AL+LGVL  +EFD  VVPE M+
Sbjct: 400 LLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESALELGVLTEKEFDEWVVPEHML 459
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Length = 456 Back     information, alignment and structure
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Length = 460 Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Length = 462 Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Length = 459 Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Length = 448 Back     information, alignment and structure
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Length = 429 Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Length = 444 Back     information, alignment and structure
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Length = 459 Back     information, alignment and structure
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Length = 455 Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Length = 449 Back     information, alignment and structure
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 402 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query423
d1yfma_459 Fumarase {Baker's yeast (Saccharomyces cerevisiae) 100.0
d1vdka_460 Fumarase {Thermus thermophilus [TaxId: 274]} 100.0
d1j3ua_462 L-aspartate ammonia lyase {Bacillus sp., ym55-1 [T 100.0
d1jswa_459 L-aspartate ammonia lyase {Escherichia coli [TaxId 100.0
d1fuoa_456 Fumarase {Escherichia coli [TaxId: 562]} 100.0
d1f1oa_408 Adenylosuccinate lyase {Bacillus subtilis [TaxId: 100.0
d1tj7a_455 Argininosuccinate lyase/delta-crystallin {Escheric 100.0
d1re5a_448 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1k62b_459 Argininosuccinate lyase/delta-crystallin {Human (H 100.0
d1q5na_444 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) { 100.0
d1tjva_449 Argininosuccinate lyase/delta-crystallin {Domestic 100.0
d1c3ca_429 Adenylosuccinate lyase {Thermotoga maritima [TaxId 100.0
d1dofa_402 Adenylosuccinate lyase {Archaeon Pyrobaculum aerop 100.0
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: All alpha proteins
fold: L-aspartase-like
superfamily: L-aspartase-like
family: L-aspartase/fumarase
domain: Fumarase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=2.1e-95  Score=743.39  Aligned_cols=419  Identities=70%  Similarity=1.026  Sum_probs=397.8

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHccccCCCCcccccccCcccccccchHHHHHHHHHHHhC
Q 014483            1 MPEPIVRAFGILKKCAAKVNMEYG-LDPAIGKAIMQAAQEVAEGKLNDHFPLVVWQTGSGTQSNMNANEVIANRAAEILG   79 (423)
Q Consensus         1 ~~~~~~~~~~~ve~A~a~a~~~~g-ip~~~a~~I~~a~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ie~~l~~~~g   79 (423)
                      +|++||+++..||+|+|++|+++| ||++.+++|.++|++|.++.++++||++.++++++++.|+|+|+||.++..+..|
T Consensus        40 ~~~~~i~a~~~vk~A~A~an~~lG~l~~~~a~aI~~a~~ei~~g~~~~~f~~~~~q~g~gt~~nmn~nevia~~a~~~~~  119 (459)
T d1yfma_          40 MPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQAADEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILG  119 (459)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCccccccchHHhhccccccccchhhhhHHHHHHHhh
Confidence            588999999999999999999999 9999999999999999998888999999999999999999999999999999888


Q ss_pred             ccCCCcccccccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceecccCCCCCcCCChhHH
Q 014483           80 HKRGEKIVHPNDHVNRSQSSNDTFPTVMHIAAAMETNSRLIPNLKVLHNSLHSKSVEFKDIVKIGRTHTQDATPLTLGQE  159 (423)
Q Consensus        80 ~~~g~~~~h~~~~v~~g~S~nDi~~Ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~grTh~Q~A~P~T~G~~  159 (423)
                      .+.|.+.+|+++|||+|+||||+++|+++|++++++.+.|.+.|..|+++|..+|++|++|+||||||+|||+|||||||
T Consensus       120 ~~~~~~~vhp~d~v~~gqSsnD~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~e~~~~im~GRTHlQ~A~PiT~G~~  199 (459)
T d1yfma_         120 GKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQE  199 (459)
T ss_dssp             -------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHH
T ss_pred             ccccccccCcchhhhhccchHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeehhHhhCCcCCCeeHHHH
Confidence            77777669999999999999999999999998777666899999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhcccccccccCCCCCCCcchHHHHHHHHHHcCCCCCcCCchhHHhhhchHHHHHHHH
Q 014483          160 FSGYTTQVKYGIDRVICCLPRMYQLAQGGTAVGTGLNTKKGFDVKIASAVAEETSLPFVTAENKFEALAAHDAFVETSGA  239 (423)
Q Consensus       160 ~a~~~~~l~r~~~rL~~~~~r~~~~~lGg~A~Gt~~~~~~~~~~~~~~~la~~LGl~~~~~~n~~da~~~rd~~~e~~~~  239 (423)
                      |++|+++|.|+++||.+++++++.+||||+|+||+.+..++++..+.+.+++.|||..++++|++||+++||++++++++
T Consensus       200 ~~~~~~~l~r~~~RL~~~~~~l~~~~lGgta~gtg~~a~~~~~~~v~~~l~~~lgl~~~~~~n~~~a~~~rD~~~e~~~~  279 (459)
T d1yfma_         200 FSGYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGA  279 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhhhcccchhhccccCCCcchHHHHHHHHHHcCCCCcccCchHHHHcCChhHHHHHHH
Confidence            99999999999999999999999999999888999888889999999999999999998899999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHhcCCCCCcceeEecCCCCCCCCCCCCCCChhHHHHHHHHHHHhhhhhHHHhhhhcCccccccc
Q 014483          240 LNTVAASLMKIANDVRLLGSGPRCGLGELILPENEPGSSIMPGKVNPTQCEALTMVCAQVIGNHVAITVGGSNGHFELNV  319 (423)
Q Consensus       240 l~~~~~~L~ria~Dl~~~~s~~r~e~gev~~~~~~~gSS~MPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~e~~~  319 (423)
                      |++++++|+|||+|+++|+|+|+.||+|+.+|+.++|||||||||||+.+|.++++|+++.|+.+++......+++|+|.
T Consensus       280 L~~la~~L~Kia~Dlrll~s~~~~g~~El~~~~~~~GSSiMP~K~NPv~~E~v~~~~~~v~G~~~~i~~~~~~~~~e~n~  359 (459)
T d1yfma_         280 LNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNV  359 (459)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCSSSSCCCEECCCCSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCS
T ss_pred             HHHHHHHHHHHHHHHHHhccceeeeEEeeecccccccCcccccccChhhHHHHHHHHHHhccHhhHHHHHHhcCcccccc
Confidence            99999999999999999999999999999999899999999999999999999999999999999998888999999999


Q ss_pred             chhhhHhhhhhHHHHHHHHHHHHHHHhhhCceeCHHHHHHHHHhhhhHHHhhcccccHHHHHHHHHHHHHcCCCHHHHHH
Q 014483          320 FKPMIASGLLHSLRLLGDASASFEKNCVRGIQANRERISKLLHESLMLVTSLNPKIGYDNAAAVAKKAHKEGTTLKDAAL  399 (423)
Q Consensus       320 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~~~la~~~g~~~a~~~~~~a~~~g~~l~e~~~  399 (423)
                      ..|.+.|.+++++..+.+++..++..|+++|+||++||++|++.+.+++++|++++||+.|+++|++|.++|++|+|++.
T Consensus       360 ~~~~~~~~~l~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~taL~~~iGy~~A~~ia~~a~~~g~~lre~~~  439 (459)
T d1yfma_         360 FKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKIGYDAASKVAKNAHKKGITLKESAL  439 (459)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGTTTGGGTCHHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHhccCEECHHHHHHHHHhCccHHHHhcchhhHHHHHHHHHHHHHhCCCHHHHHH
Confidence            99999999999999999999999888999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCHHHHhhccCccccc
Q 014483          400 KLGVLNSEEFDNLVVPEKMI  419 (423)
Q Consensus       400 ~~~~l~~~~l~~~~dp~~~~  419 (423)
                      +.+.++++|+++++||++|+
T Consensus       440 ~~~~Ls~~eld~lldP~~~l  459 (459)
T d1yfma_         440 ELGVLTEKEFDEWVVPEHML  459 (459)
T ss_dssp             HTTSCCHHHHHHHCCGGGCC
T ss_pred             HhCCCCHHHHHHHcCHHHhC
Confidence            99999999999999999986
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]} Back     information, alignment and structure
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]} Back     information, alignment and structure
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]} Back     information, alignment and structure
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]} Back     information, alignment and structure
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure