Citrus Sinensis ID: 014507

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420---
Protein Sequence
MAPCDCNMLPRSYSAYQVFDEITAPKPGLRLSWRNLSLHRKPAKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKIPGSRSIAL
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHccccccccccccHHHHHcccHHHHHHcccHHHHHHHHHHHHHcccccccccccHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHHcccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccEEEEc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHccccccEEEHHHHHHHHHccccHHHHHHHHHHHcccccEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEEEEEEc
Coil and Loop (DISEMBL)
mapcdcnmlprsysayqvfdeitapkpglrlswrnlslhrkpakwsrslrsgpaleaikaedmgktqvkddtsmftwiqigpnitEEQKQAISQFPRKMTKRCKAFVKQIICvspetgnlSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGepldkrsygSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYsmngnsegAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNmrkaglepsDKCVALILSACEKENQLNRALEFLIDLErdgfmvgkeASCTLAAWFKRLGVVEEVEHVLREYglretyskipgsrsial
Flexible Loop (DISEMBL)
MAPCDCNMLPRSYSAYQVFDEITAPKPGLRLSWRNLSlhrkpakwsrslrsgpaleaikaedmgktqvkddTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIIcvspetgnLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLgepldkrsygSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVlreyglretyskipgsrsial
Low Complexity Region (SEG)
MAPCDCNMLPRSYSAYQVFDEITAPKPGLRLSWRNLSLHRKPAKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVaelalleesfeaNIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKIPGSRSIAL
Disordered region (IsUnstruct)
*****CNMLPRSYSAYQVFDEITAPKPGLRLSWRNLSLH********************************TSMFTWIQIGPNITEE**QAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETY***********
Disordered Region (DISOPRED)
*APCDCNMLPRSYSAYQVFDEITAPKPGLRLSWRNLSLHRKPAKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKIPGSRSIAL
Disordered Region (DISEMBL)
MAPCDCNMLPRSYSAYQVFDEITAPKPGLRLSWRNLSLHRKPAKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKI********
Disordered Region (DISPRO)
*APCDCNMLPRSYSAYQVFDEITAPKPGLRLSWRNLSLHRKPAKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKIPGSRSIAL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAPCDCNMLPRSYSAYQVFDEITAPKPGLRLSWRNLSLHRKPAKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKIPGSRSIAL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	423	2.2.26 [Sep-21-2011]
Q9LPC4	409	Pentatricopeptide repeat-	yes	no	0.813	0.841	0.631	1e-130
Q940Z1	316	Pentatricopeptide repeat-	no	no	0.491	0.658	0.401	2e-37
Q0WMY5	952	Pentatricopeptide repeat-	no	no	0.588	0.261	0.245	3e-19
Q9FLD8	678	Pentatricopeptide repeat-	no	no	0.600	0.374	0.238	3e-17
O64624	822	Pentatricopeptide repeat-	no	no	0.453	0.233	0.261	7e-15
Q9SF38	778	Pentatricopeptide repeat-	no	no	0.423	0.230	0.291	3e-14
O04504	606	Pentatricopeptide repeat-	no	no	0.576	0.402	0.252	3e-14
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.475	0.269	0.247	3e-14
Q9LYT2	583	Pentatricopeptide repeat-	no	no	0.475	0.344	0.265	9e-14
Q9LR67	660	Pentatricopeptide repeat-	no	no	0.567	0.363	0.226	9e-14

>sp|Q9LPC4|PPR1_ARATH Pentatricopeptide repeat-containing protein At1g01970 OS=Arabidopsis thaliana GN=At1g01970 PE=2 SV=1

 Score =  465 bits (1196), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 219/347 (63%), Positives = 281/347 (80%), Gaps = 3/347 (0%)

Query: 63  MGKTQVKDD---TSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGN 119
           +G+   K+D   +  F W  +G N+TEEQ +AI++ P KM+KRC+A ++QIIC SPE G+
Sbjct: 55  IGEVVEKEDAEQSRSFNWADVGLNLTEEQDEAITRIPIKMSKRCQALMRQIICFSPEKGS 114

Query: 120 LSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHG 179
             DLL AW+R M P RADWL++LK+LK ++ P Y++VAE +LL++SFEAN RDYTKIIH 
Sbjct: 115 FCDLLGAWLRRMNPIRADWLSILKELKNLDSPFYIKVAEFSLLQDSFEANARDYTKIIHY 174

Query: 180 YGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD 239
           YGK  Q+++AE TLL+MK RGF+ DQVTLT MV +YSKAG  K+AEETF EIKLLGEPLD
Sbjct: 175 YGKLNQVEDAERTLLSMKNRGFLIDQVTLTAMVQLYSKAGCHKLAEETFNEIKLLGEPLD 234

Query: 240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFE 299
            RSYGSM+MAY+RAG+ ++GE LLREMD+QE+  G EVYKALLR YSM G++EGA+RVF+
Sbjct: 235 YRSYGSMIMAYIRAGVPEKGESLLREMDSQEICAGREVYKALLRDYSMGGDAEGAKRVFD 294

Query: 300 AIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN 359
           A+Q AGITPD ++C LLINAY ++GQSQ A  AF+NMRKAG++ +DKCVAL+L+A EKE 
Sbjct: 295 AVQIAGITPDVKLCGLLINAYSVSGQSQNARLAFENMRKAGIKATDKCVALVLAAYEKEE 354

Query: 360 QLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406
           +LN AL FL++LE+D  M+GKEAS  LA WFK+LGVVEEVE +LRE+
Sbjct: 355 KLNEALGFLVELEKDSIMLGKEASAVLAQWFKKLGVVEEVELLLREF 401

Arabidopsis thaliana (taxid: 3702)

>sp|Q940Z1|PPR51_ARATH Pentatricopeptide repeat-containing protein At1g19525 OS=Arabidopsis thaliana GN=At1g19525 PE=2 SV=2

 Score =  157 bits (396), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 84/209 (40%), Positives = 122/209 (58%), Gaps = 1/209 (0%)

Query: 196 MKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255
           M + G   D +T T +V MYSK+GN + A E FE +K  G   D++ Y +M++ YV AG 
Sbjct: 1   MSQNGIFPDILTATALVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGK 60

Query: 256 LDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCA 314
              GE L++EM A+E+    EVY ALLR Y+  G++ GA  +  ++Q+A   P      +
Sbjct: 61  PKLGERLMKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYS 120

Query: 315 LLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374
           L + AY  AGQ  KA + F  MRK G +P DKC+A ++ A + EN L++AL  L+ LE+D
Sbjct: 121 LFVEAYGKAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKD 180

Query: 375 GFMVGKEASCTLAAWFKRLGVVEEVEHVL 403
           G  +G      L  W   LG++EE E +L
Sbjct: 181 GIEIGVITYTVLVDWMANLGLIEEAEQLL 209

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WMY5|PP365_ARATH Pentatricopeptide repeat-containing protein At5g04810, chloroplastic OS=Arabidopsis thaliana GN=PPR4 PE=1 SV=1

 Score = 97.1 bits (240), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/265 (24%), Positives = 126/265 (47%), Gaps = 16/265 (6%)

Query: 119 NLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFE--------ANI 170
           N   +++A+ +  KP R ++  ++K         Y +  ++    E+FE           
Sbjct: 293 NWQAVISAFEKISKPSRTEFGLMVK--------FYGRRGDMHRARETFERMRARGITPTS 344

Query: 171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEE 230
           R YT +IH Y     +  A + +  MK  G     VT +V+V  +SKAG+ + A+  F+E
Sbjct: 345 RIYTSLIHAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDE 404

Query: 231 IKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN 290
            K + + L+   YG ++ A+ +   ++R E L+REM+ + +     +Y  ++ GY+M  +
Sbjct: 405 AKRIHKTLNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVAD 464

Query: 291 SEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVAL 350
            +    VF+ ++  G TP       LIN Y   G+  KA    + M++ G++ + K  ++
Sbjct: 465 EKKGLVVFKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSM 524

Query: 351 ILSACEKENQLNRALEFLIDLERDG 375
           +++   K      A     D+ ++G
Sbjct: 525 MINGFVKLKDWANAFAVFEDMVKEG 549

May play a role in the plastid ribosome biogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FLD8|PP408_ARATH Pentatricopeptide repeat-containing protein At5g39980, chloroplastic OS=Arabidopsis thaliana GN=At5g39980 PE=2 SV=1

 Score = 90.1 bits (222), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 68/285 (23%), Positives = 124/285 (43%), Gaps = 31/285 (10%)

Query: 164 ESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKM 223
           +  E N+  Y  +I  YGK M+ + A N +  M+ RG   + +T + ++ ++ KAG L  
Sbjct: 394 KDIEQNVVTYNTMIKIYGKTMEHEKATNLVQEMQSRGIEPNAITYSTIISIWGKAGKLDR 453

Query: 224 AEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREM----------------- 266
           A   F++++  G  +D+  Y +M++AY R G++   + LL E+                 
Sbjct: 454 AATLFQKLRSSGVEIDQVLYQTMIVAYERVGLMGHAKRLLHELKLPDNIPRETAITILAK 513

Query: 267 -----DAQEVYVGS---------EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARM 312
                +A  V+  +          V+  ++  YS N        VFE ++ AG  PD+ +
Sbjct: 514 AGRTEEATWVFRQAFESGEVKDISVFGCMINLYSRNQRYVNVIEVFEKMRTAGYFPDSNV 573

Query: 313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE 372
            A+++NAY    + +KA T ++ M++ G    D+    +LS    +            LE
Sbjct: 574 IAMVLNAYGKQREFEKADTVYREMQEEGCVFPDEVHFQMLSLYSSKKDFEMVESLFQRLE 633

Query: 373 RDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKIPG 417
            D  +  KE    +AA ++R   + +   V+     R      PG
Sbjct: 634 SDPNVNSKELHLVVAALYERADKLNDASRVMNRMRERGILKPFPG 678

Arabidopsis thaliana (taxid: 3702)

>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940 OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 55/210 (26%), Positives = 102/210 (48%)

Query: 196 MKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255
           M+ +G   D+ T + ++   ++ G L+ A+E F E+K  G      +Y +++  + +AG+
Sbjct: 272 MRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAELKSCGYEPGTVTYNALLQVFGKAGV 331

Query: 256 LDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCAL 315
                 +L+EM+       S  Y  L+  Y   G S+ A  V E +   G+ P+A     
Sbjct: 332 YTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTT 391

Query: 316 LINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDG 375
           +I+AY  AG+  +A   F +M++AG  P+      +LS   K+++ N  ++ L D++ +G
Sbjct: 392 VIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSNG 451

Query: 376 FMVGKEASCTLAAWFKRLGVVEEVEHVLRE 405
               +    T+ A     G+ + V  V RE
Sbjct: 452 CSPNRATWNTMLALCGNKGMDKFVNRVFRE 481

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SF38|PP222_ARATH Pentatricopeptide repeat-containing protein At3g09650, chloroplastic OS=Arabidopsis thaliana GN=HCF152 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 54/185 (29%), Positives = 90/185 (48%), Gaps = 6/185 (3%)

Query: 157 AELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKR---RGFICDQVTLTVMVV 213
            E  LL + F  + R YT ++ GY K  ++ +    L AM+R   R    D+VT T +V 
Sbjct: 401 GEPPLLPKVFAPDSRIYTTLMKGYMKNGRVADTARMLEAMRRQDDRNSHPDEVTYTTVVS 460

Query: 214 MYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV 273
            +  AG +  A +   E+  +G P ++ +Y  ++  Y +   +DR E LLREM  ++  +
Sbjct: 461 AFVNAGLMDRARQVLAEMARMGVPANRITYNVLLKGYCKQLQIDRAEDLLREM-TEDAGI 519

Query: 274 GSEV--YKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYT 331
             +V  Y  ++ G  +  +S GA   F  ++  GI P       L+ A+ M+GQ + A  
Sbjct: 520 EPDVVSYNIIIDGCILIDDSAGALAFFNEMRTRGIAPTKISYTTLMKAFAMSGQPKLANR 579

Query: 332 AFQNM 336
            F  M
Sbjct: 580 VFDEM 584

Involved in the processing of polycistronic chloroplast psbB-psbT-psbH-petB-petD transcript. Could bind RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820 OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 110/246 (44%), Gaps = 2/246 (0%)

Query: 161 LLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN 220
           +L++  + N+  Y  +I+G     +I  A +    M   G   + +T   ++  + K   
Sbjct: 322 MLDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDM 381

Query: 221 LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKA 280
           LK A + F  +K  G     R Y  ++ AY + G +D G  L  EM+ + +      Y  
Sbjct: 382 LKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNC 441

Query: 281 LLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG 340
           L+ G   NGN E A+++F+ +   G+ PD     +L+  Y   G+S+KA    + M K G
Sbjct: 442 LIAGLCRNGNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMG 500

Query: 341 LEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCT-LAAWFKRLGVVEEV 399
           L+P      +++    KE  L  A      +E++  +    AS   L   + + G +E+ 
Sbjct: 501 LKPRHLTYNIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDA 560

Query: 400 EHVLRE 405
             +L E
Sbjct: 561 NMLLNE 566

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 91/202 (45%)

Query: 164 ESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKM 223
           +  E N+  Y  +I+G  ++ +++     L  M RRG+  D+VT   ++  Y K GN   
Sbjct: 269 KGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQ 328

Query: 224 AEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR 283
           A     E+   G      +Y S++ +  +AG ++R    L +M  + +      Y  L+ 
Sbjct: 329 ALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVD 388

Query: 284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP 343
           G+S  G    A RV   +   G +P       LIN + + G+ + A    ++M++ GL P
Sbjct: 389 GFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSP 448

Query: 344 SDKCVALILSACEKENQLNRAL 365
                + +LS   +   ++ AL
Sbjct: 449 DVVSYSTVLSGFCRSYDVDEAL 470

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LYT2|PP287_ARATH Pentatricopeptide repeat-containing protein At3g59040 OS=Arabidopsis thaliana GN=At3g59040 PE=2 SV=2

 Score = 78.6 bits (192), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 99/211 (46%), Gaps = 10/211 (4%)

Query: 169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETF 228
           N+  YT ++  YG+  +  NAE     M+  G     +T  +++  + +    K AEE F
Sbjct: 173 NVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVF 232

Query: 229 EEIKLLGE---PL--DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR 283
           E   LL E   PL  D++ Y  M+  Y +AG  ++   +   M  + V   +  Y +L+ 
Sbjct: 233 E--TLLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLM- 289

Query: 284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP 343
             S   + +   ++++ +Q + I PD    ALLI AY  A + ++A + F+ M  AG+ P
Sbjct: 290 --SFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRP 347

Query: 344 SDKCVALILSACEKENQLNRALEFLIDLERD 374
           + K   ++L A      + +A      + RD
Sbjct: 348 THKAYNILLDAFAISGMVEQAKTVFKSMRRD 378

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1

 Score = 78.6 bits (192), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 55/243 (22%), Positives = 98/243 (40%)

Query: 163 EESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLK 222
           E   E  +  Y  +++G    M + +AE     M+      D VT   M+  Y KAG  +
Sbjct: 215 ENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQ 274

Query: 223 MAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALL 282
            A E   +++  G   DK +Y +M+ A            L +EMD + + V    +  ++
Sbjct: 275 KAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVI 334

Query: 283 RGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE 342
            G    G       VFE +   G  P+  +  +LI+ Y  +G  + A      M   G +
Sbjct: 335 GGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFK 394

Query: 343 PSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHV 402
           P     +++++   K  ++  AL++      DG  +      +L     + G V+E E +
Sbjct: 395 PDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERL 454

Query: 403 LRE 405
             E
Sbjct: 455 FEE 457

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
224130012	407	predicted protein [Populus trichocarpa]	0.952	0.990	0.608	1e-140
225453925	352	PREDICTED: pentatricopeptide repeat-cont	0.813	0.977	0.718	1e-139
296089159	353	unnamed protein product [Vitis vinifera]	0.796	0.954	0.729	1e-139
388518405	414	unknown [Lotus japonicus]	0.952	0.973	0.613	1e-138
449433119	404	PREDICTED: pentatricopeptide repeat-cont	0.829	0.868	0.663	1e-138
357506869	426	Pentatricopeptide repeat-containing prot	0.799	0.793	0.674	1e-132
356530135	356	PREDICTED: pentatricopeptide repeat-cont	0.829	0.985	0.642	1e-131
356568284	414	PREDICTED: pentatricopeptide repeat-cont	0.796	0.814	0.661	1e-130
15217583	409	pentatricopeptide repeat-containing prot	0.813	0.841	0.631	1e-128
297848306	409	pentatricopeptide repeat-containing prot	0.813	0.841	0.628	1e-128

>gi|224130012|ref|XP_002320730.1| predicted protein [Populus trichocarpa] gi|222861503|gb|EEE99045.1| predicted protein [Populus trichocarpa]

 Score =  503 bits (1295), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 249/409 (60%), Positives = 313/409 (76%), Gaps = 6/409 (1%)

Query: 1   MAPCDCNMLPRSYSAYQVFDEITAPKPGLRLSWRNLSLHRKPAKWSRSLRSG--PALEAI 58
           MA    N+LP S     +  E   PK    L +   SL ++P   + S +S   P L AI
Sbjct: 1   MATYVINILPFSSPTCPLHSE---PKKTSNLHFLGNSLCQQPVTLT-SCKSQIQPVLAAI 56

Query: 59  KAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETG 118
             E+  + ++  +   F W++IGPNI EEQKQAISQ P KMTKRCKA ++QIIC + + G
Sbjct: 57  NVEEKVEGEIGKEKPKFRWVEIGPNIPEEQKQAISQLPFKMTKRCKALMRQIICFNDKKG 116

Query: 119 NLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIH 178
           +L  LL+AWV+ MKPRR DWL++LK+L  MEHPLYL+V E+ALLEESFEAN+RDYTKIIH
Sbjct: 117 SLRGLLSAWVKIMKPRRKDWLSILKELNKMEHPLYLEVVEIALLEESFEANVRDYTKIIH 176

Query: 179 GYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPL 238
            YG   Q++ AE T LAM+ RGF+ DQVTLT M+ MYSK GNL +AEETFEE+KLLG+PL
Sbjct: 177 FYGMNNQLEEAERTRLAMEERGFVSDQVTLTAMIHMYSKGGNLTLAEETFEELKLLGQPL 236

Query: 239 DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVF 298
           D+RSYGSM+MAY+RAGM ++GE++LREMDAQE+  GSEVYKALLR YS+ G+++GAQRVF
Sbjct: 237 DRRSYGSMIMAYIRAGMPEKGEMILREMDAQEIRAGSEVYKALLRAYSIIGDADGAQRVF 296

Query: 299 EAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKE 358
           +AIQ AGI PD R CA+L+NAY MAGQSQ AY  F+NM +AG+EP+D+CVAL+L+A EKE
Sbjct: 297 DAIQLAGIPPDDRTCAVLLNAYGMAGQSQNAYATFENMWRAGIEPTDRCVALVLAAYEKE 356

Query: 359 NQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG 407
           N+LN+AL+FLI LER+  ++GKEAS  LA WF RLGVV+EVE VLREY 
Sbjct: 357 NKLNQALDFLIGLEREKLIIGKEASEVLAEWFGRLGVVKEVELVLREYA 405

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453925|ref|XP_002273719.1| PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like [Vitis vinifera]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/344 (71%), Positives = 301/344 (87%)

Query: 75  FTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRFMKPR 134
           + WI+IGPNITE QK  ISQ   KMTKRCKA VKQIIC SPE  +LSDLLAAWV+ MKPR
Sbjct: 9   YKWIEIGPNITEAQKMTISQISLKMTKRCKALVKQIICFSPEERSLSDLLAAWVKIMKPR 68

Query: 135 RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLL 194
           RADWL+VLK+L  ++HPL L+VAELALLEESFEANIRDYTKII GYGK+ ++Q+AENTL 
Sbjct: 69  RADWLSVLKELGRLDHPLLLEVAELALLEESFEANIRDYTKIIDGYGKQNRLQDAENTLS 128

Query: 195 AMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG 254
           AMKRRGFICDQVTLT M+ MYSKAGNL++AE+TFEEIKLLG PLDKRSYGSM+MAY+RAG
Sbjct: 129 AMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEIKLLGHPLDKRSYGSMIMAYIRAG 188

Query: 255 MLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA 314
           M D+GE+L++EM+A+E+Y G EVYKALLR YS   ++EGAQRVF+AIQFAGI+PD ++CA
Sbjct: 189 MPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDAEGAQRVFDAIQFAGISPDVKLCA 248

Query: 315 LLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374
           LLINAY++AGQ+QKA+ AF+NMR++GL+P+DK +AL+L+A EKEN+LN+AL+FLIDLERD
Sbjct: 249 LLINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALMLAAYEKENKLNKALDFLIDLERD 308

Query: 375 GFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKIPGS 418
           G ++GKEAS  LAAWF+RLGVV+EVE VLREY  +E   ++  S
Sbjct: 309 GIVLGKEASELLAAWFQRLGVVKEVELVLREYSAKEASCEVHPS 352

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296089159|emb|CBI38862.3| unnamed protein product [Vitis vinifera]

 Score =  502 bits (1293), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 246/337 (72%), Positives = 298/337 (88%)

Query: 75  FTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRFMKPR 134
           + WI+IGPNITE QK  ISQ   KMTKRCKA VKQIIC SPE  +LSDLLAAWV+ MKPR
Sbjct: 9   YKWIEIGPNITEAQKMTISQISLKMTKRCKALVKQIICFSPEERSLSDLLAAWVKIMKPR 68

Query: 135 RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLL 194
           RADWL+VLK+L  ++HPL L+VAELALLEESFEANIRDYTKII GYGK+ ++Q+AENTL 
Sbjct: 69  RADWLSVLKELGRLDHPLLLEVAELALLEESFEANIRDYTKIIDGYGKQNRLQDAENTLS 128

Query: 195 AMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG 254
           AMKRRGFICDQVTLT M+ MYSKAGNL++AE+TFEEIKLLG PLDKRSYGSM+MAY+RAG
Sbjct: 129 AMKRRGFICDQVTLTAMINMYSKAGNLELAEKTFEEIKLLGHPLDKRSYGSMIMAYIRAG 188

Query: 255 MLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA 314
           M D+GE+L++EM+A+E+Y G EVYKALLR YS   ++EGAQRVF+AIQFAGI+PD ++CA
Sbjct: 189 MPDQGEILVKEMEAKEIYAGREVYKALLRAYSNTSDAEGAQRVFDAIQFAGISPDVKLCA 248

Query: 315 LLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374
           LLINAY++AGQ+QKA+ AF+NMR++GL+P+DK +AL+L+A EKEN+LN+AL+FLIDLERD
Sbjct: 249 LLINAYRVAGQTQKAHVAFENMRRSGLKPNDKSIALMLAAYEKENKLNKALDFLIDLERD 308

Query: 375 GFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRET 411
           G ++GKEAS  LAAWF+RLGVV+EVE VLREY  +E 
Sbjct: 309 GIVLGKEASELLAAWFQRLGVVKEVELVLREYSAKEA 345

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388518405|gb|AFK47264.1| unknown [Lotus japonicus]

 Score =  499 bits (1284), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 251/409 (61%), Positives = 308/409 (75%), Gaps = 6/409 (1%)

Query: 1   MAPCDCNMLPR-SYSAYQVFDEITAPKPGLRLSWRNLSLHRKPAKWS-RSLRSGPALEAI 58
           M  C  N+L    Y  Y + + IT      R+  R  SL++KP+       R   AL  I
Sbjct: 2   MGTCCYNLLSNLYYPPYLITNSIT---KFCRVQTRGNSLYQKPSNLDLHRHRFDSALVGI 58

Query: 59  KAEDMGKTQVKDDTSM-FTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPET 117
             E++ K +VKD+    F W +IG NIT EQ +AIS+ P KMTKRCKA ++QIIC S E 
Sbjct: 59  GMEEIVKEEVKDENHRRFRWTEIGHNITHEQNEAISKLPFKMTKRCKALMRQIICFSAEK 118

Query: 118 GNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKII 177
           GN+SDLL AWV+ MKP RA+WL+VLK+L+ MEHPLYL+VAE ALLEESFE NIRDYT II
Sbjct: 119 GNVSDLLNAWVKIMKPIRAEWLSVLKELETMEHPLYLEVAEHALLEESFEVNIRDYTNII 178

Query: 178 HGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP 237
           H  GK  Q++ AEN L AMK+RGFICDQV LT MV +YSKAG+L  AEE FEEI+LLGEP
Sbjct: 179 HYCGKHNQLEEAENILTAMKQRGFICDQVILTTMVHIYSKAGHLDRAEEYFEEIRLLGEP 238

Query: 238 LDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRV 297
           LDKRSYGSM+ AY+RAGM +RGE LL EMDA+E+Y GSEVYKALLR YS  GN+EGAQRV
Sbjct: 239 LDKRSYGSMITAYIRAGMPERGESLLEEMDAREIYAGSEVYKALLRAYSRIGNAEGAQRV 298

Query: 298 FEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEK 357
           F+AIQ AGI PD ++C L+  AY MAGQS+KA  AF+NM++AG+EP+D+C+  +L A EK
Sbjct: 299 FDAIQLAGIIPDDKICGLVTKAYGMAGQSEKARIAFENMKRAGIEPTDRCIGSVLVAYEK 358

Query: 358 ENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406
           E++LN ALEFLIDLE++G MVG+EAS  LA WF++LGVVEEVE VLR++
Sbjct: 359 ESKLNTALEFLIDLEKEGIMVGEEASAILAGWFRKLGVVEEVELVLRDF 407

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433119|ref|XP_004134345.1| PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like [Cucumis sativus] gi|449480346|ref|XP_004155867.1| PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like [Cucumis sativus]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 233/351 (66%), Positives = 287/351 (81%)

Query: 61  EDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNL 120
           +++ K + + +   F W+++G +ITE QKQAISQ P KMTKRCKA +KQIIC SP+ G L
Sbjct: 52  DEIHKLESEREKPRFRWVEVGYDITETQKQAISQLPPKMTKRCKAVMKQIICFSPQKGEL 111

Query: 121 SDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGY 180
           SD+LAAWVR MKP RADWL VLK L+++ HPLY+QVAE AL E +FEAN RDYTKIIH Y
Sbjct: 112 SDMLAAWVRIMKPERADWLLVLKHLRILNHPLYIQVAEAALEEITFEANTRDYTKIIHHY 171

Query: 181 GKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK 240
           GK+ Q+++AE  LL+M+ RGF+CDQ+TLT M+ +YSKA  L +A++TFEE+KLL +PLDK
Sbjct: 172 GKQNQLEDAEKVLLSMRERGFVCDQITLTTMIHIYSKADKLNLAKQTFEELKLLEQPLDK 231

Query: 241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEA 300
           RS+G+M+MAYVRAG  + GE +L+EMDA+++Y GSEVYKALLR YSM GN+EGAQRVF+A
Sbjct: 232 RSFGAMIMAYVRAGFPEEGEKILKEMDAKDIYAGSEVYKALLRAYSMVGNAEGAQRVFDA 291

Query: 301 IQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ 360
           IQ A ITPD ++C LLINAY MAGQS++A  AF NMR+AG+EPSDKC+AL LSA EKEN+
Sbjct: 292 IQLAAITPDEKLCGLLINAYLMAGQSREAQIAFDNMRRAGIEPSDKCIALALSAYEKENR 351

Query: 361 LNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRET 411
           LN ALE LIDLE+D  MVGKEAS  LAAW KRLGVVEEVE VLREY  +E 
Sbjct: 352 LNSALELLIDLEKDNVMVGKEASKILAAWLKRLGVVEEVEIVLREYTEKEV 402

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357506869|ref|XP_003623723.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355498738|gb|AES79941.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  477 bits (1228), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 228/338 (67%), Positives = 275/338 (81%)

Query: 75  FTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRFMKPR 134
           F W +I  +ITEEQKQAI++ P +M KRCKA ++QIIC S E G L D+L AWV  MKP 
Sbjct: 86  FRWNEIRNDITEEQKQAIAKLPFRMEKRCKAVMRQIICFSEEKGRLCDVLRAWVEIMKPT 145

Query: 135 RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLL 194
           RADWL+VLK+LK M+HPLYL+VAE AL+EESFE N+RDYTK+IH Y K+ Q++ AEN   
Sbjct: 146 RADWLSVLKELKNMDHPLYLEVAEHALVEESFEPNLRDYTKLIHYYSKENQLEAAENIFT 205

Query: 195 AMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG 254
            MK+RGFICDQV LT MV MYSKAG+L  AEE FEEIKLLGEPLDKRSYGSM+MAY+RAG
Sbjct: 206 LMKQRGFICDQVILTTMVHMYSKAGHLDRAEEYFEEIKLLGEPLDKRSYGSMIMAYIRAG 265

Query: 255 MLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA 314
           M ++GE LL EMDAQ++Y GSEVYKALLR YS+ GN+EGAQRVF+AIQ AGI PD +MC+
Sbjct: 266 MPEKGESLLEEMDAQDIYAGSEVYKALLRAYSVIGNAEGAQRVFDAIQLAGIIPDDKMCS 325

Query: 315 LLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374
           LLI AY MAGQSQKA  AF+NM++AG+EP+DKC++ +L A EKEN LN ALEFLI+LERD
Sbjct: 326 LLIYAYSMAGQSQKARIAFENMKRAGIEPTDKCISSVLVAYEKENMLNTALEFLIELERD 385

Query: 375 GFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETY 412
           G MV +E S  LA WF++LGVVEEVE VLR++    ++
Sbjct: 386 GIMVKEETSRILAGWFRKLGVVEEVELVLRDFATTTSH 423

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530135|ref|XP_003533639.1| PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like [Glycine max]

 Score =  475 bits (1222), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 226/352 (64%), Positives = 283/352 (80%), Gaps = 1/352 (0%)

Query: 61  EDMGKTQVKD-DTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGN 119
           E + K +VK+ +   + WI++G N+T+EQ+QAIS+ P +M  R KA ++QIIC S E G 
Sbjct: 2   EQIVKEEVKEGNERRYRWIEVGKNVTKEQQQAISKLPFRMADRSKALMRQIICFSAEKGT 61

Query: 120 LSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHG 179
           +SDLL +WV+ MKP RADWL+VLK+L+  EHP YL+VA+  LLEESFE NIRDYTKIIH 
Sbjct: 62  ISDLLRSWVKLMKPTRADWLSVLKELRTTEHPFYLEVAKHTLLEESFEVNIRDYTKIIHY 121

Query: 180 YGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD 239
           YG+   +++AE  L  MK+RGFI DQV LT MV M SKAGN   A+E FEEIKLLGEPLD
Sbjct: 122 YGEHNLLEDAEKFLTLMKQRGFIYDQVILTTMVHMSSKAGNHDRAKEYFEEIKLLGEPLD 181

Query: 240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFE 299
           KRSYGSM+MAY+RAGM + GE LL++M+AQE+  GSE+YKALLR YSM GN+EGAQRVF+
Sbjct: 182 KRSYGSMIMAYIRAGMPEEGENLLQQMEAQEILAGSEIYKALLRAYSMIGNAEGAQRVFD 241

Query: 300 AIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN 359
           AIQ AGITPD ++C+LL+NAY MAGQSQKA  AF+NMR+AG++PSDKC+A +L A EKE+
Sbjct: 242 AIQLAGITPDDKICSLLVNAYAMAGQSQKALIAFENMRRAGIKPSDKCIASVLVAYEKES 301

Query: 360 QLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRET 411
           ++N ALEFLIDLERDG MVG+EAS  LA WF++LGVVEEVE VLR++ + E 
Sbjct: 302 KINTALEFLIDLERDGIMVGEEASAVLAKWFRKLGVVEEVELVLRDFAIIEV 353

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568284|ref|XP_003552343.1| PREDICTED: pentatricopeptide repeat-containing protein At1g01970-like [Glycine max]

 Score =  473 bits (1216), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 223/337 (66%), Positives = 279/337 (82%)

Query: 70  DDTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVR 129
           D+   + WI++G N+ +EQ+QAIS+ P +M  RCKA ++QIIC S E G++SDLL +WV+
Sbjct: 71  DNDRRYRWIEVGKNVPKEQQQAISKLPFRMADRCKALMRQIICYSAEKGSMSDLLRSWVK 130

Query: 130 FMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNA 189
            MKP RADWL+VLK+LK+ EHP+YL+VA+ AL+EESFE NIRDYTKIIH YG+   +++A
Sbjct: 131 LMKPTRADWLSVLKELKIREHPVYLEVAKHALMEESFEVNIRDYTKIIHYYGEHNLLEDA 190

Query: 190 ENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA 249
           E  L  MK+RGFI DQV LT MV MYSKAGN   A+E FEEIKLLG+PLDKRSYGSM+MA
Sbjct: 191 EKFLTLMKQRGFIYDQVILTTMVHMYSKAGNHDRAKEYFEEIKLLGKPLDKRSYGSMIMA 250

Query: 250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD 309
           Y+RAGM + GE LL+EM+AQE+  GSEVYKALLR YSM GN+EGAQRVF+AIQ AGITPD
Sbjct: 251 YIRAGMPEEGENLLQEMEAQEILAGSEVYKALLRAYSMIGNAEGAQRVFDAIQLAGITPD 310

Query: 310 ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLI 369
            ++C+L++NAY MAGQSQKA  AF+NMR+AG++PSDKC+A +L A EKE+++N ALEFLI
Sbjct: 311 DKICSLVVNAYVMAGQSQKALIAFENMRRAGIKPSDKCIASVLVAYEKESKINTALEFLI 370

Query: 370 DLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406
           DLERDG MV +EAS  LA WF++LGVVEEVE VLR++
Sbjct: 371 DLERDGIMVEEEASAVLAKWFRKLGVVEEVELVLRDF 407

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15217583|ref|NP_171699.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75264110|sp|Q9LPC4.1|PPR1_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g01970 gi|8570448|gb|AAF76475.1|AC020622_9 Contains similarity to an unknown protein gi|AAD26479 from Arabidopsis thaliana BAC gb|AC007169 and contains multiple PPR PF|01535 repeats [Arabidopsis thaliana] gi|34098825|gb|AAQ56795.1| At1g01970 [Arabidopsis thaliana] gi|110735700|dbj|BAE99830.1| hypothetical protein [Arabidopsis thaliana] gi|332189240|gb|AEE27361.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  465 bits (1196), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 219/347 (63%), Positives = 281/347 (80%), Gaps = 3/347 (0%)

Query: 63  MGKTQVKDD---TSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGN 119
           +G+   K+D   +  F W  +G N+TEEQ +AI++ P KM+KRC+A ++QIIC SPE G+
Sbjct: 55  IGEVVEKEDAEQSRSFNWADVGLNLTEEQDEAITRIPIKMSKRCQALMRQIICFSPEKGS 114

Query: 120 LSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHG 179
             DLL AW+R M P RADWL++LK+LK ++ P Y++VAE +LL++SFEAN RDYTKIIH 
Sbjct: 115 FCDLLGAWLRRMNPIRADWLSILKELKNLDSPFYIKVAEFSLLQDSFEANARDYTKIIHY 174

Query: 180 YGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD 239
           YGK  Q+++AE TLL+MK RGF+ DQVTLT MV +YSKAG  K+AEETF EIKLLGEPLD
Sbjct: 175 YGKLNQVEDAERTLLSMKNRGFLIDQVTLTAMVQLYSKAGCHKLAEETFNEIKLLGEPLD 234

Query: 240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFE 299
            RSYGSM+MAY+RAG+ ++GE LLREMD+QE+  G EVYKALLR YSM G++EGA+RVF+
Sbjct: 235 YRSYGSMIMAYIRAGVPEKGESLLREMDSQEICAGREVYKALLRDYSMGGDAEGAKRVFD 294

Query: 300 AIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN 359
           A+Q AGITPD ++C LLINAY ++GQSQ A  AF+NMRKAG++ +DKCVAL+L+A EKE 
Sbjct: 295 AVQIAGITPDVKLCGLLINAYSVSGQSQNARLAFENMRKAGIKATDKCVALVLAAYEKEE 354

Query: 360 QLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406
           +LN AL FL++LE+D  M+GKEAS  LA WFK+LGVVEEVE +LRE+
Sbjct: 355 KLNEALGFLVELEKDSIMLGKEASAVLAQWFKKLGVVEEVELLLREF 401

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848306|ref|XP_002892034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297337876|gb|EFH68293.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  464 bits (1193), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 218/347 (62%), Positives = 279/347 (80%), Gaps = 3/347 (0%)

Query: 63  MGKTQVKDDTSMF---TWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGN 119
           +G+   K+DT       W+ +G ++TEEQ +AI++ P KM+KRC+A ++QIIC S E G+
Sbjct: 55  IGEVVEKEDTEQIPRSNWVDVGLDLTEEQDEAITRIPIKMSKRCQALMRQIICFSSEKGS 114

Query: 120 LSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHG 179
             DLL AWVR M P RADWL++LK+LK ++ P Y++VAE +LLE+SFEAN RDYTKIIH 
Sbjct: 115 FCDLLGAWVRRMNPIRADWLSILKELKNLDSPFYIKVAEFSLLEDSFEANARDYTKIIHY 174

Query: 180 YGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD 239
           YGK  Q+++AE TLL+MK RGF+ DQVTLT +V +YSKAG  K+AEETF EIKL+GEPLD
Sbjct: 175 YGKLNQVEDAERTLLSMKNRGFLIDQVTLTAIVQLYSKAGYHKLAEETFNEIKLIGEPLD 234

Query: 240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFE 299
            RSYGSM+MAY+RAG  ++GE LLREMD+QE+  G EVYKALLR YSM G++EGA+RVF+
Sbjct: 235 NRSYGSMIMAYIRAGAPEKGEALLREMDSQEICAGREVYKALLRAYSMGGDAEGAKRVFD 294

Query: 300 AIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN 359
           A+Q AGITPD ++C LLINAY ++GQSQ A  AF+NMRKAG++ +DKCVAL+L+A EKE 
Sbjct: 295 AVQIAGITPDVKLCGLLINAYSVSGQSQNARLAFENMRKAGIKATDKCVALVLAAYEKEE 354

Query: 360 QLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406
           +LN AL FL++LE+D  MVGKEAS  LA WFK+LGVVEEVE +LRE+
Sbjct: 355 KLNEALGFLVELEKDSIMVGKEASAVLAQWFKKLGVVEEVELLLREF 401

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	423
TAIR|locus:2025442	409	AT1G01970 "AT1G01970" [Arabido	0.813	0.841	0.608	1.8e-112
TAIR|locus:2016402	316	NFD5 "NUCLEAR FUSION DEFECTIVE	0.491	0.658	0.401	2.4e-37
TAIR|locus:2175443	952	AT5G04810 [Arabidopsis thalian	0.737	0.327	0.216	2.6e-17
TAIR|locus:2024301	606	AT1G09820 "AT1G09820" [Arabido	0.557	0.389	0.256	3e-14
TAIR|locus:2044430	822	AT2G18940 [Arabidopsis thalian	0.550	0.283	0.256	3e-14
TAIR|locus:2077637	871	AT3G06920 "AT3G06920" [Arabido	0.536	0.260	0.222	4.2e-13
TAIR|locus:2077735	590	AT3G59040 "AT3G59040" [Arabido	0.475	0.340	0.265	6.3e-13
TAIR|locus:2151281	819	AT5G02860 [Arabidopsis thalian	0.513	0.264	0.278	3e-12
TAIR|locus:2174008	974	AT5G61990 "AT5G61990" [Arabido	0.541	0.235	0.243	3.9e-12
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.489	0.277	0.241	5.6e-12

TAIR|locus:2025442 AT1G01970 "AT1G01970" [Arabidopsis thaliana (taxid:3702)]

 Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
 Identities = 211/347 (60%), Positives = 269/347 (77%)

Query:    63 MGKTQVKDDTSM---FTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGN 119
             +G+   K+D      F W  +G N+TEEQ +AI++ P KM+KRC+A ++QIIC SPE G+
Sbjct:    55 IGEVVEKEDAEQSRSFNWADVGLNLTEEQDEAITRIPIKMSKRCQALMRQIICFSPEKGS 114

Query:   120 LSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVXXXXXXXXXXXXNIRDYTKIIHG 179
               DLL AW+R M P RADWL++LK+LK ++ P Y++V            N RDYTKIIH 
Sbjct:   115 FCDLLGAWLRRMNPIRADWLSILKELKNLDSPFYIKVAEFSLLQDSFEANARDYTKIIHY 174

Query:   180 YGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD 239
             YGK  Q+++AE TLL+MK RGF+ DQVTLT MV +YSKAG  K+AEETF EIKLLGEPLD
Sbjct:   175 YGKLNQVEDAERTLLSMKNRGFLIDQVTLTAMVQLYSKAGCHKLAEETFNEIKLLGEPLD 234

Query:   240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFE 299
              RSYGSM+MAY+RAG+ ++GE LLREMD+QE+  G EVYKALLR YSM G++EGA+RVF+
Sbjct:   235 YRSYGSMIMAYIRAGVPEKGESLLREMDSQEICAGREVYKALLRDYSMGGDAEGAKRVFD 294

Query:   300 AIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN 359
             A+Q AGITPD ++C LLINAY ++GQSQ A  AF+NMRKAG++ +DKCVAL+L+A EKE 
Sbjct:   295 AVQIAGITPDVKLCGLLINAYSVSGQSQNARLAFENMRKAGIKATDKCVALVLAAYEKEE 354

Query:   360 QLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY 406
             +LN AL FL++LE+D  M+GKEAS  LA WFK+LGVVEEVE +LRE+
Sbjct:   355 KLNEALGFLVELEKDSIMLGKEASAVLAQWFKKLGVVEEVELLLREF 401

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2016402 NFD5 "NUCLEAR FUSION DEFECTIVE 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 401 (146.2 bits), Expect = 2.4e-37, P = 2.4e-37
 Identities = 84/209 (40%), Positives = 122/209 (58%)

Query:   196 MKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM 255
             M + G   D +T T +V MYSK+GN + A E FE +K  G   D++ Y +M++ YV AG 
Sbjct:     1 MSQNGIFPDILTATALVHMYSKSGNFERATEAFENLKSYGLRPDEKIYEAMILGYVNAGK 60

Query:   256 LDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCA 314
                GE L++EM A+E+    EVY ALLR Y+  G++ GA  +  ++Q+A   P      +
Sbjct:    61 PKLGERLMKEMQAKELKASEEVYMALLRAYAQMGDANGAAGISSSMQYASDGPLSFEAYS 120

Query:   315 LLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD 374
             L + AY  AGQ  KA + F  MRK G +P DKC+A ++ A + EN L++AL  L+ LE+D
Sbjct:   121 LFVEAYGKAGQVDKAKSNFDEMRKLGHKPDDKCIANLVRAYKGENSLDKALRLLLQLEKD 180

Query:   375 GFMVGKEASCTLAAWFKRLGVVEEVEHVL 403
             G  +G      L  W   LG++EE E +L
Sbjct:   181 GIEIGVITYTVLVDWMANLGLIEEAEQLL 209

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2175443 AT5G04810 [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 2.6e-17, P = 2.6e-17
 Identities = 69/318 (21%), Positives = 148/318 (46%)

Query:    58 IKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPET 117
             +K +D  + + K +  +  W++ G   T+   ++     R+ +++    +++I+  + + 
Sbjct:   238 VKLDDGKRLKTKAEQRV-RWVEEGEEDTKMSNKSSWHQEREGSRKS---LQRILDTNGD- 292

Query:   118 GNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVXXXXXXXXXXXXNIRDYTKII 177
              N   +++A+ +  KP R ++  ++K           +               R YT +I
Sbjct:   293 -NWQAVISAFEKISKPSRTEFGLMVKFYGRRGDMHRARETFERMRARGITPTSRIYTSLI 351

Query:   178 HGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP 237
             H Y     +  A + +  MK  G     VT +V+V  +SKAG+ + A+  F+E K + + 
Sbjct:   352 HAYAVGRDMDEALSCVRKMKEEGIEMSLVTYSVIVGGFSKAGHAEAADYWFDEAKRIHKT 411

Query:   238 LDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRV 297
             L+   YG ++ A+ +   ++R E L+REM+ + +     +Y  ++ GY+M  + +    V
Sbjct:   412 LNASIYGKIIYAHCQTCNMERAEALVREMEEEGIDAPIAIYHTMMDGYTMVADEKKGLVV 471

Query:   298 FEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEK 357
             F+ ++  G TP       LIN Y   G+  KA    + M++ G++ + K  +++++   K
Sbjct:   472 FKRLKECGFTPTVVTYGCLINLYTKVGKISKALEVSRVMKEEGVKHNLKTYSMMINGFVK 531

Query:   358 ENQLNRALEFLIDLERDG 375
                   A     D+ ++G
Sbjct:   532 LKDWANAFAVFEDMVKEG 549

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

TAIR|locus:2024301 AT1G09820 "AT1G09820" [Arabidopsis thaliana (taxid:3702)]

 Score = 212 (79.7 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 61/238 (25%), Positives = 105/238 (44%)

Query:   169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETF 228
             N+  Y  +I+G     +I  A +    M   G   + +T   ++  + K   LK A + F
Sbjct:   330 NVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGFCKNDMLKEALDMF 389

Query:   229 EEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN 288
               +K  G     R Y  ++ AY + G +D G  L  EM+ + +      Y  L+ G   N
Sbjct:   390 GSVKGQGAVPTTRMYNMLIDAYCKLGKIDDGFALKEEMEREGIVPDVGTYNCLIAGLCRN 449

Query:   289 GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCV 348
             GN E A+++F+ +   G+ PD     +L+  Y   G+S+KA    + M K GL+P     
Sbjct:   450 GNIEAAKKLFDQLTSKGL-PDLVTFHILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTY 508

Query:   349 ALILSACEKENQLNRALEFLIDLERDGFMVGKEASCT-LAAWFKRLGVVEEVEHVLRE 405
              +++    KE  L  A      +E++  +    AS   L   + + G +E+   +L E
Sbjct:   509 NIVMKGYCKEGNLKAATNMRTQMEKERRLRMNVASYNVLLQGYSQKGKLEDANMLLNE 566

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2044430 AT2G18940 [Arabidopsis thaliana (taxid:3702)]

 Score = 214 (80.4 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 60/234 (25%), Positives = 111/234 (47%)

Query:   173 YTKIIHGYGKKMQI-QNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEI 231
             Y  I+  +GK  +  +     L  M+ +G   D+ T + ++   ++ G L+ A+E F E+
Sbjct:   248 YNVILDVFGKMGRSWRKILGVLDEMRSKGLKFDEFTCSTVLSACAREGLLREAKEFFAEL 307

Query:   232 KLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS 291
             K  G      +Y +++  + +AG+      +L+EM+       S  Y  L+  Y   G S
Sbjct:   308 KSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGFS 367

Query:   292 EGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALI 351
             + A  V E +   G+ P+A     +I+AY  AG+  +A   F +M++AG  P+      +
Sbjct:   368 KEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAV 427

Query:   352 LSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLRE 405
             LS   K+++ N  ++ L D++ +G    +    T+ A     G+ + V  V RE
Sbjct:   428 LSLLGKKSRSNEMIKMLCDMKSNGCSPNRATWNTMLALCGNKGMDKFVNRVFRE 481

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 4.2e-13, P = 4.2e-13
 Identities = 51/229 (22%), Positives = 104/229 (45%)

Query:   171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEE 230
             R Y+ +IHG  K            +MK +G + D     +++  + K G +  A +  EE
Sbjct:   553 RSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQLLEE 612

Query:   231 IKLLG-EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG 289
             +K  G EP    +YGS++    +   LD   +L  E  ++ + +   +Y +L+ G+   G
Sbjct:   613 MKTKGFEPTVV-TYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGKVG 671

Query:   290 NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA 349
               + A  + E +   G+TP+      L++A   A +  +A   FQ+M++    P+     
Sbjct:   672 RIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVTYG 731

Query:   350 LILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEE 398
             ++++   K  + N+A  F  ++++ G      +  T+ +   + G + E
Sbjct:   732 ILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAE 780

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077735 AT3G59040 "AT3G59040" [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 6.3e-13, P = 6.3e-13
 Identities = 56/211 (26%), Positives = 99/211 (46%)

Query:   169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETF 228
             N+  YT ++  YG+  +  NAE     M+  G     +T  +++  + +    K AEE F
Sbjct:   180 NVISYTALMESYGRGGKCNNAEAIFRRMQSSGPEPSAITYQIILKTFVEGDKFKEAEEVF 239

Query:   229 EEIKLLGE---PL--DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR 283
             E   LL E   PL  D++ Y  M+  Y +AG  ++   +   M  + V   +  Y +L+ 
Sbjct:   240 ET--LLDEKKSPLKPDQKMYHMMIYMYKKAGNYEKARKVFSSMVGKGVPQSTVTYNSLM- 296

Query:   284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP 343
               S   + +   ++++ +Q + I PD    ALLI AY  A + ++A + F+ M  AG+ P
Sbjct:   297 --SFETSYKEVSKIYDQMQRSDIQPDVVSYALLIKAYGRARREEEALSVFEEMLDAGVRP 354

Query:   344 SDKCVALILSACEKENQLNRALEFLIDLERD 374
             + K   ++L A      + +A      + RD
Sbjct:   355 THKAYNILLDAFAISGMVEQAKTVFKSMRRD 385

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

TAIR|locus:2151281 AT5G02860 [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 3.0e-12, P = 3.0e-12
 Identities = 61/219 (27%), Positives = 94/219 (42%)

Query:   187 QNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM 246
             Q A      MK  GF  D+VT   ++ +Y K+   K A +   E+ L G      +Y S+
Sbjct:   296 QEAAQVFEEMKAAGFSYDKVTYNALLDVYGKSHRPKEAMKVLNEMVLNGFSPSIVTYNSL 355

Query:   247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGI 306
             + AY R GMLD    L  +M  +        Y  LL G+   G  E A  +FE ++ AG 
Sbjct:   356 ISAYARDGMLDEAMELKNQMAEKGTKPDVFTYTTLLSGFERAGKVESAMSIFEEMRNAGC 415

Query:   307 TPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALE 366
              P+       I  Y   G+  +    F  +   GL P D      L A   +N ++  + 
Sbjct:   416 KPNICTFNAFIKMYGNRGKFTEMMKIFDEINVCGLSP-DIVTWNTLLAVFGQNGMDSEVS 474

Query:   367 FLI-DLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLR 404
              +  +++R GF+  +E   TL + + R G  E+   V R
Sbjct:   475 GVFKEMKRAGFVPERETFNTLISAYSRCGSFEQAMTVYR 513

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2174008 AT5G61990 "AT5G61990" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 3.9e-12, P = 3.9e-12
 Identities = 56/230 (24%), Positives = 101/230 (43%)

Query:   174 TKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL 233
             T +I+ Y KK ++  A +   +M  +G + D  T TV++    K   +  AEE F E++ 
Sbjct:   561 TGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRG 620

Query:   234 LGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEG 293
              G   D  SYG ++  + + G + +   +  EM  + +     +Y  LL G+  +G  E 
Sbjct:   621 KGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEK 680

Query:   294 AQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILS 353
             A+ + + +   G+ P+A     +I+ Y  +G   +A+  F  M+  GL P       ++ 
Sbjct:   681 AKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYTTLVD 740

Query:   354 ACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVL 403
              C + N + RA+  +    + G          L  W  + G  E    VL
Sbjct:   741 GCCRLNDVERAIT-IFGTNKKGCASSTAPFNALINWVFKFGKTELKTEVL 789

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 5.6e-12, P = 5.6e-12
 Identities = 50/207 (24%), Positives = 92/207 (44%)

Query:   169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETF 228
             N+  Y  +I+G  ++ +++     L  M RRG+  D+VT   ++  Y K GN   A    
Sbjct:   274 NLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMH 333

Query:   229 EEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN 288
              E+   G      +Y S++ +  +AG ++R    L +M  + +      Y  L+ G+S  
Sbjct:   334 AEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQK 393

Query:   289 GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCV 348
             G    A RV   +   G +P       LIN + + G+ + A    ++M++ GL P     
Sbjct:   394 GYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSY 453

Query:   349 ALILSACEKENQLNRALEFLIDLERDG 375
             + +LS   +   ++ AL    ++   G
Sbjct:   454 STVLSGFCRSYDVDEALRVKREMVEKG 480

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LPC4	PPR1_ARATH	No assigned EC number	0.6311	0.8132	0.8410	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIV.814.1 hypothetical protein (337 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	423
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-11
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-11
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-07
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	1e-06
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	1e-05
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	6e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	0.003
pfam06239	229	pfam06239, ECSIT, Evolutionarily conserved signall	0.004

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 65.3 bits (159), Expect = 3e-11
 Identities = 41/167 (24%), Positives = 78/167 (46%)

Query: 209 TVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDA 268
           T+ V   S+ G+   A   ++++K  G   D+  + ++V     AG LD+   +L++   
Sbjct: 618 TIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677

Query: 269 QEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK 328
           Q + +G+  Y +L+   S   N + A  ++E I+   + P       LI A     Q  K
Sbjct: 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPK 737

Query: 329 AYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDG 375
           A      M++ GL P+    +++L A E+++  +  L+ L   + DG
Sbjct: 738 ALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDG 784

Length = 1060

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 64.9 bits (158), Expect = 3e-11
 Identities = 56/249 (22%), Positives = 103/249 (41%), Gaps = 39/249 (15%)

Query: 167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEE 226
           EAN+  +  +I G  +  Q+  A      M+ +    D+V    ++    ++G +  A +
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563

Query: 227 TFEEIKLLGEPL--DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRG 284
              E+K    P+  D  + G+++ A   AG +DR + + + +    +    EVY   +  
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623

Query: 285 YSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP- 343
            S  G+ + A  +++ ++  G+ PD    + L++    AG   KA+   Q+ RK G++  
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG 683

Query: 344 ----------------------------SDKCV-------ALILSACEKENQLNRALEFL 368
                                       S K         ALI + CE  NQL +ALE L
Sbjct: 684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEG-NQLPKALEVL 742

Query: 369 IDLERDGFM 377
            +++R G  
Sbjct: 743 SEMKRLGLC 751

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 51.8 bits (124), Expect = 4e-07
 Identities = 42/203 (20%), Positives = 89/203 (43%), Gaps = 5/203 (2%)

Query: 167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEE 226
           E     +  ++ GY      + A      M+  G   DQ T ++M+ ++S+   L+ A++
Sbjct: 287 EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQ 346

Query: 227 TFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS 286
               +   G PLD  +  ++V  Y + G ++    +   M  + +      + AL+ GY 
Sbjct: 347 AHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLIS----WNALIAGYG 402

Query: 287 MNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNM-RKAGLEPSD 345
            +G    A  +FE +   G+ P+      +++A + +G S++ +  FQ+M     ++P  
Sbjct: 403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRA 462

Query: 346 KCVALILSACEKENQLNRALEFL 368
              A ++    +E  L+ A   +
Sbjct: 463 MHYACMIELLGREGLLDEAYAMI 485

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 41/195 (21%), Positives = 82/195 (42%), Gaps = 8/195 (4%)

Query: 186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS 245
           I  A   L  ++  G   D    T ++   +K+G +    E F E+   G   +  ++G+
Sbjct: 453 IDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA 512

Query: 246 MVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG 305
           ++    RAG + +       M ++ V     V+ AL+   S  G S    R F+ +    
Sbjct: 513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALI---SACGQSGAVDRAFDVLAEMK 569

Query: 306 -----ITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ 360
                I PD      L+ A   AGQ  +A   +Q + +  ++ + +   + +++C ++  
Sbjct: 570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGD 629

Query: 361 LNRALEFLIDLERDG 375
            + AL    D+++ G
Sbjct: 630 WDFALSIYDDMKKKG 644

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 47.2 bits (112), Expect = 1e-05
 Identities = 57/286 (19%), Positives = 108/286 (37%), Gaps = 47/286 (16%)

Query: 154 LQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVV 213
           L++ E+      F      Y  ++        I+  +     ++  GF  DQ  +  +++
Sbjct: 107 LELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLL 166

Query: 214 MYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREM-----DA 268
           M+ K G L  A   F+E+          S+G+++   V AG       L REM     DA
Sbjct: 167 MHVKCGMLIDARRLFDEMPERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222

Query: 269 Q---------------EVYVGSEVYK---------------ALLRGYSMNGNSEGAQRVF 298
           +                   G +++                AL+  YS  G+ E A+ VF
Sbjct: 223 EPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVF 282

Query: 299 EAIQFAGITPDARMCAL--LINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACE 356
           + +      P+    A   ++  Y + G S++A   +  MR +G+       ++++    
Sbjct: 283 DGM------PEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFS 336

Query: 357 KENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHV 402
           +   L  A +    L R GF +   A+  L   + + G +E+  +V
Sbjct: 337 RLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNV 382

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 43/215 (20%)

Query: 198 RRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD 257
           R GF  D   +  ++ MY K G++  A   F+ +       D  S+ +M+  Y   G   
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECL 270

Query: 258 RG-------------------------------EVLLREMDAQEVYVG----SEVYKALL 282
            G                               E L REM    V  G      V  +L+
Sbjct: 271 EGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLI 330

Query: 283 RGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE 342
           + Y   G+   A++VF  ++    T DA     +I+ Y+  G   KA   +  M +  + 
Sbjct: 331 QMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386

Query: 343 PSDKCVALILSACEKENQLNRALEFLIDLERDGFM 377
           P +  +A +LSAC     L+  ++     ER G +
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLI 421

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 37.0 bits (87), Expect = 6e-04
 Identities = 12/40 (30%), Positives = 22/40 (55%)

Query: 173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMV 212
           Y  +I GY KK +++ A      MK+RG   +  T ++++
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILI 45

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 39.5 bits (92), Expect = 0.003
 Identities = 19/75 (25%), Positives = 36/75 (48%)

Query: 290 NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA 349
           + +GA RV   +Q AG+  D ++   LI+    +G+    +  F  M  AG+E +     
Sbjct: 452 DIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFG 511

Query: 350 LILSACEKENQLNRA 364
            ++  C +  Q+ +A
Sbjct: 512 ALIDGCARAGQVAKA 526

Length = 1060

>gnl|CDD|148068 pfam06239, ECSIT, Evolutionarily conserved signalling intermediate in Toll pathway

 Score = 38.1 bits (89), Expect = 0.004
 Identities = 34/131 (25%), Positives = 51/131 (38%), Gaps = 23/131 (17%)

Query: 221 LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEV-----LLREMDAQEVYVGS 275
           L   E+ FE     GE  DK S+   V ++    +  RG V      L++M+   V    
Sbjct: 31  LAAHEDLFERA--EGEKRDKASFLEAVESFEERDVRRRGHVEFIYAALKKMEEYGVEKDL 88

Query: 276 EVYKALL----RGYSMNGN------------SEGAQRVFEAIQFAGITPDARMCALLINA 319
           EVY ALL    +G  +  N             + A  V E ++  G+ PD     LL+N 
Sbjct: 89  EVYNALLDVFPKGVFIPRNIFQAEFMHYPRQQQCAIDVLEQMENHGVMPDKETEFLLVNI 148

Query: 320 YQMAGQSQKAY 330
           +       + Y
Sbjct: 149 FGKKSHPMRKY 159

Activation of NF-kappaB as a consequence of signaling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signaling pathways between TRAF-6 and MEKK-1. Length = 229

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	423
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.91
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.9
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.88
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.8
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.79
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.77
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.74
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.73
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.73
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.72
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.72
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.68
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.67
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.66
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.65
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.64
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.61
PRK14574	822	hmsH outer membrane protein; Provisional	99.58
PRK14574	822	hmsH outer membrane protein; Provisional	99.57
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.57
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.54
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.54
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.54
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.5
KOG2076	895	consensus RNA polymerase III transcription factor	99.49
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.49
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.48
KOG1126	638	consensus DNA-binding cell division cycle control	99.47
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.46
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.45
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.44
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.44
KOG1126	638	consensus DNA-binding cell division cycle control	99.43
PF13041	50	PPR_2: PPR repeat family	99.41
KOG2003	840	consensus TPR repeat-containing protein [General f	99.41
PF13041	50	PPR_2: PPR repeat family	99.4
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.37
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.37
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.36
PRK12370	553	invasion protein regulator; Provisional	99.35
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.33
PRK12370	553	invasion protein regulator; Provisional	99.31
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.3
KOG2003	840	consensus TPR repeat-containing protein [General f	99.28
KOG2076	895	consensus RNA polymerase III transcription factor	99.27
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.24
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.23
KOG1129	478	consensus TPR repeat-containing protein [General f	99.23
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.18
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.18
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.15
KOG1129	478	consensus TPR repeat-containing protein [General f	99.14
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.14
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.11
PRK11189	296	lipoprotein NlpI; Provisional	99.07
PRK11189	296	lipoprotein NlpI; Provisional	99.06
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.06
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.05
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.05
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.02
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.0
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.94
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.94
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.86
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.85
PF12854	34	PPR_1: PPR repeat	98.83
PF12854	34	PPR_1: PPR repeat	98.83
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.82
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.79
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.79
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.77
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.77
PLN02789	320	farnesyltranstransferase	98.74
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.74
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.7
KOG1125	579	consensus TPR repeat-containing protein [General f	98.65
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.6
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.59
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.57
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.56
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.56
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.51
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.5
PLN02789	320	farnesyltranstransferase	98.5
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.49
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.49
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.49
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.48
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.48
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.47
PRK04841	903	transcriptional regulator MalT; Provisional	98.46
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.45
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.44
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.44
KOG1125	579	consensus TPR repeat-containing protein [General f	98.43
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.41
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.4
PRK15359	144	type III secretion system chaperone protein SscB;	98.39
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.38
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.36
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.36
PRK15359	144	type III secretion system chaperone protein SscB;	98.33
PRK04841	903	transcriptional regulator MalT; Provisional	98.31
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.3
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.3
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.29
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.28
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.26
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.26
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.25
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.24
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.24
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.22
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.22
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.22
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.21
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.2
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.19
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.18
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.16
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.16
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.14
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.14
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.12
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.1
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.09
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.08
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.07
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	98.05
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.02
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.02
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.01
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.96
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.94
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.92
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.91
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.9
COG4783	484	Putative Zn-dependent protease, contains TPR repea	97.89
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.88
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.87
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.86
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.84
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.78
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.72
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.71
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.7
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.7
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.68
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.66
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.63
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.62
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.62
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.61
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.6
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.56
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.56
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.5
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.49
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.48
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.47
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.46
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.45
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.44
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.44
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.41
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.38
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.35
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.34
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.25
PF12688	120	TPR_5: Tetratrico peptide repeat	97.19
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.17
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.12
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.1
PF12688	120	TPR_5: Tetratrico peptide repeat	97.09
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.08
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.03
KOG0553	304	consensus TPR repeat-containing protein [General f	97.03
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	97.02
KOG0553	304	consensus TPR repeat-containing protein [General f	97.01
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.0
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.96
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.94
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.89
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.86
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	96.86
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.83
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.8
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.71
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.7
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.7
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.69
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.67
PRK10803	263	tol-pal system protein YbgF; Provisional	96.66
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.64
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.6
KOG3941	406	consensus Intermediate in Toll signal transduction	96.57
PRK10803	263	tol-pal system protein YbgF; Provisional	96.53
COG3898	531	Uncharacterized membrane-bound protein [Function u	96.46
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.43
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.32
PF13371	73	TPR_9: Tetratricopeptide repeat	96.21
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.19
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.18
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.15
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.14
PF13371	73	TPR_9: Tetratricopeptide repeat	95.98
KOG3941	406	consensus Intermediate in Toll signal transduction	95.97
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.96
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.94
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.92
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.9
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.73
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.71
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.7
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.57
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.56
PRK15331	165	chaperone protein SicA; Provisional	95.54
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.49
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.47
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.47
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.45
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.42
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.37
PRK15331	165	chaperone protein SicA; Provisional	95.34
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.29
KOG2041	1189	consensus WD40 repeat protein [General function pr	95.28
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	95.21
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.16
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	94.92
KOG2610	491	consensus Uncharacterized conserved protein [Funct	94.88
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.72
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.7
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	94.69
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	94.45
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	94.42
KOG1585	308	consensus Protein required for fusion of vesicles	94.37
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.35
KOG1941	518	consensus Acetylcholine receptor-associated protei	94.26
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	94.25
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.17
COG3898	531	Uncharacterized membrane-bound protein [Function u	94.14
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	94.0
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	93.89
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.75
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.74
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	93.5
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.45
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.44
KOG4555	175	consensus TPR repeat-containing protein [Function	93.4
KOG1941	518	consensus Acetylcholine receptor-associated protei	93.32
KOG4555	175	consensus TPR repeat-containing protein [Function	92.94
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	92.8
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.7
COG3118	304	Thioredoxin domain-containing protein [Posttransla	92.69
COG4105	254	ComL DNA uptake lipoprotein [General function pred	92.67
COG0457	291	NrfG FOG: TPR repeat [General function prediction	92.65
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.64
PF13929	292	mRNA_stabil: mRNA stabilisation	92.47
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.42
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.36
COG0457	291	NrfG FOG: TPR repeat [General function prediction	92.3
PF13428	44	TPR_14: Tetratricopeptide repeat	92.16
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.15
PF13428	44	TPR_14: Tetratricopeptide repeat	92.0
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.92
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.82
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	91.69
PF13512	142	TPR_18: Tetratricopeptide repeat	91.46
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	90.91
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	90.89
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.87
PRK11906	458	transcriptional regulator; Provisional	90.69
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	90.65
KOG4570	418	consensus Uncharacterized conserved protein [Funct	90.62
COG4105	254	ComL DNA uptake lipoprotein [General function pred	90.52
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.14
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.78
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.4
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	89.39
PRK11619	644	lytic murein transglycosylase; Provisional	89.16
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	88.46
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	88.44
PF13929	292	mRNA_stabil: mRNA stabilisation	88.37
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	88.14
PRK11906	458	transcriptional regulator; Provisional	88.0
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	87.97
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.95
PHA02875	413	ankyrin repeat protein; Provisional	87.38
COG1747	711	Uncharacterized N-terminal domain of the transcrip	87.06
PF13512	142	TPR_18: Tetratricopeptide repeat	86.89
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.87
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.54
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	86.47
KOG1550	552	consensus Extracellular protein SEL-1 and related	86.24
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	86.11
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	86.08
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	85.81
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	85.56
PF13431	34	TPR_17: Tetratricopeptide repeat	85.41
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	85.41
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	85.26
PHA02875	413	ankyrin repeat protein; Provisional	85.01
PF13431	34	TPR_17: Tetratricopeptide repeat	84.71
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	84.53
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	83.63
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	82.76
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	82.72
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	82.45
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	81.83
PRK09687	280	putative lyase; Provisional	80.87
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	80.56
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	80.24

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.3e-58  Score=466.70  Aligned_cols=367  Identities=17%  Similarity=0.184  Sum_probs=306.3

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHH-HHHHhcCChhhhh----hhHHHHHHHHhccCCCCCH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQ-KQAISQFPRKMTK----RCKAFVKQIICVSPETGNL  120 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~-~~~a~~~~~~m~~----~~~~~~~~ll~~~~~~g~~  120 (423)
                      ++.|+++.|..+  |++|.+.|+.|+.  .+||+++.+|++.+ .+.|.++|++|.+    +|..+|+.+|.+|++.|++
T Consensus       448 ~k~g~~e~A~~l--f~~M~~~Gl~pD~--~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~  523 (1060)
T PLN03218        448 ASSQDIDGALRV--LRLVQEAGLKADC--KLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV  523 (1060)
T ss_pred             HhCcCHHHHHHH--HHHHHHcCCCCCH--HHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence            667788888777  8888888888876  88888888888644 4888888888874    6888888888888888888


Q ss_pred             HHHHHHHHHh----cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhh--cccCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 014507          121 SDLLAAWVRF----MKPRRADWLAVLKQLKLMEHPLYLQVAELALLE--ESFEANIRDYTKIIHGYGKKMQIQNAENTLL  194 (423)
Q Consensus       121 ~~a~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  194 (423)
                      ++|+++|++|    +.||..+|+.++.+|++.|+.+.|..++..|..  .|+.||..+|+++|.+|++.|++++|.++|+
T Consensus       524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~  603 (1060)
T PLN03218        524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ  603 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            8888888887    568888888888888888888888888888865  5678888888888888888888888888888


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 014507          195 AMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVG  274 (423)
Q Consensus       195 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  274 (423)
                      .|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus       604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd  683 (1060)
T PLN03218        604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG  683 (1060)
T ss_pred             HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014507          275 SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSA  354 (423)
Q Consensus       275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  354 (423)
                      ..+|+.||.+|++.|++++|.++|++|.+.|+.||..+||.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+
T Consensus       684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a  763 (1060)
T PLN03218        684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA  763 (1060)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH----HcC-------------------CHHHHHHHHHHhcccCC
Q 014507          355 CEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFK----RLG-------------------VVEEVEHVLREYGLRET  411 (423)
Q Consensus       355 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~----~~g-------------------~~~~A~~~~~~m~~~~~  411 (423)
                      |++.|++++|.+++++|.+.|+.||..+|++++..|.    +++                   ..++|..+|++|.+.++
T Consensus       764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi  843 (1060)
T PLN03218        764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT  843 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence            8888888888888888888888888888888876543    221                   23568888888888888


Q ss_pred             cCCCC
Q 014507          412 YSKIP  416 (423)
Q Consensus       412 ~~~~~  416 (423)
                      .|+..
T Consensus       844 ~Pd~~  848 (1060)
T PLN03218        844 LPTME  848 (1060)
T ss_pred             CCCHH
Confidence            77643

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=2.6e-58  Score=464.46  Aligned_cols=368  Identities=16%  Similarity=0.181  Sum_probs=236.5

Q ss_pred             hhhcCchhhHhhhhhcccccccccC-CC-----------------------------cceeeeeeccccch-HHHHHHhc
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKD-DT-----------------------------SMFTWIQIGPNITE-EQKQAISQ   94 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~-~~-----------------------------~~~~~~~l~~~~~~-~~~~~a~~   94 (423)
                      ++.|++++|+.+  |++|.+.|+.+ +.                             +..+|+.++.+|++ +..+.|..
T Consensus       381 ~r~G~l~eAl~L--fd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~a~~k~g~~e~A~~  458 (1060)
T PLN03218        381 LRDGRIKDCIDL--LEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCASSQDIDGALR  458 (1060)
T ss_pred             HHCcCHHHHHHH--HHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHhCcCHHHHHH
Confidence            677899999888  99999888642 21                             22555566665554 33355666


Q ss_pred             CChhhhh----hhHHHHHHHHhccCCCCCHHHHHHHHHHh----cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhccc
Q 014507           95 FPRKMTK----RCKAFVKQIICVSPETGNLSDLLAAWVRF----MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESF  166 (423)
Q Consensus        95 ~~~~m~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  166 (423)
                      +|++|.+    +|..+|+.+|.+|++.|+++.|.++|++|    +.||..+|+.+|.+|++.|+.++|..++..|.+.|+
T Consensus       459 lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv  538 (1060)
T PLN03218        459 VLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNV  538 (1060)
T ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence            6666653    45566666666666666666666666665    246666666666666666666666666666666666


Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014507          167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKR--RGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYG  244 (423)
Q Consensus       167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~  244 (423)
                      .||..+|+.+|.+|++.|++++|.++|++|..  .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+
T Consensus       539 ~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tyn  618 (1060)
T PLN03218        539 KPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT  618 (1060)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHH
Confidence            66666666666666666666666666666654  4556666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 014507          245 SMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAG  324 (423)
Q Consensus       245 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  324 (423)
                      .+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|
T Consensus       619 sLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G  698 (1060)
T PLN03218        619 IAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK  698 (1060)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507          325 QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLR  404 (423)
Q Consensus       325 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  404 (423)
                      ++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|+
T Consensus       699 ~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~  778 (1060)
T PLN03218        699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLS  778 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            66666666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HhcccCCcCCC
Q 014507          405 EYGLRETYSKI  415 (423)
Q Consensus       405 ~m~~~~~~~~~  415 (423)
                      +|.+.++.++.
T Consensus       779 ~M~k~Gi~pd~  789 (1060)
T PLN03218        779 QAKEDGIKPNL  789 (1060)
T ss_pred             HHHHcCCCCCH
Confidence            66666655543

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=8.6e-56  Score=442.45  Aligned_cols=338  Identities=17%  Similarity=0.194  Sum_probs=273.4

Q ss_pred             hcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhhhhHHHHHHHHhccCCCCCHHHHHHHHHHh----cCCC
Q 014507           60 AEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRF----MKPR  134 (423)
Q Consensus        60 ~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~p~  134 (423)
                      +.+|.+.|+.|+.  .+||.++.+|++ +..+.|.++|++|+++|.++||.+|.+|++.|++++|+++|++|    ..||
T Consensus       146 ~~~m~~~g~~~~~--~~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~  223 (697)
T PLN03081        146 YWHVESSGFEPDQ--YMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAE  223 (697)
T ss_pred             HHHHHHhCCCcch--HHHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCC
Confidence            4444444444433  444444444443 22244555555555555555555555555555555555555544    3344


Q ss_pred             hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          135 RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVM  214 (423)
Q Consensus       135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  214 (423)
                      ..+|+.++.+|+..|....+.+++..+.+.|+.||..+|+++|++|+++|++++|.++|++|.+.    |..+||++|.+
T Consensus       224 ~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~----~~vt~n~li~~  299 (697)
T PLN03081        224 PRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAG  299 (697)
T ss_pred             hhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCC----ChhHHHHHHHH
Confidence            45555555555555555555555555555566667777788999999999999999999999754    89999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 014507          215 YSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGA  294 (423)
Q Consensus       215 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  294 (423)
                      |++.|++++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.||..+|+.||++|++.|++++|
T Consensus       300 y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A  379 (697)
T PLN03081        300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDA  379 (697)
T ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-
Q 014507          295 QRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER-  373 (423)
Q Consensus       295 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-  373 (423)
                      .++|++|.    .||..+||+||.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ 
T Consensus       380 ~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~  455 (697)
T PLN03081        380 RNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSEN  455 (697)
T ss_pred             HHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHh
Confidence            99999997    5899999999999999999999999999999999999999999999999999999999999999986 


Q ss_pred             CCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          374 DGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       374 ~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      .|+.|+..+|+.++++|++.|++++|.+++++|.
T Consensus       456 ~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~  489 (697)
T PLN03081        456 HRIKPRAMHYACMIELLGREGLLDEAYAMIRRAP  489 (697)
T ss_pred             cCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCC
Confidence            5999999999999999999999999999999885

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=9e-55  Score=435.10  Aligned_cols=364  Identities=17%  Similarity=0.191  Sum_probs=318.5

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhh----hhHHHHHHHHhccCCCCCH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTK----RCKAFVKQIICVSPETGNL  120 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~----~~~~~~~~ll~~~~~~g~~  120 (423)
                      ++.|++++|+.+  |++|.+.|..|+.  .+|+.++.++++ +..+.+.+++..+.+    +|..+|+.||++|++.|++
T Consensus       200 ~~~g~~~~A~~l--f~~M~~~g~~p~~--~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~  275 (697)
T PLN03081        200 VDAGNYREAFAL--FREMWEDGSDAEP--RTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI  275 (697)
T ss_pred             HHCcCHHHHHHH--HHHHHHhCCCCCh--hhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCH
Confidence            344444444444  4444444444433  444444444442 112333333333332    4667889999999999999


Q ss_pred             HHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 014507          121 SDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRG  200 (423)
Q Consensus       121 ~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g  200 (423)
                      ++|.++|++|..+|..+|+.++.+|++.|+.++|..++..|.+.|+.||..+|+.++.+|++.|++++|.+++..|.+.|
T Consensus       276 ~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g  355 (697)
T PLN03081        276 EDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG  355 (697)
T ss_pred             HHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 014507          201 FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKA  280 (423)
Q Consensus       201 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  280 (423)
                      +.||..+|++||.+|++.|++++|.++|++|.    .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.
T Consensus       356 ~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~----~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~  431 (697)
T PLN03081        356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLA  431 (697)
T ss_pred             CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC----CCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence            99999999999999999999999999999996    47999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 014507          281 LLRGYSMNGNSEGAQRVFEAIQF-AGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN  359 (423)
Q Consensus       281 li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  359 (423)
                      ++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|++++|.+++++|   ++.||..+|+.|+.+|...|
T Consensus       432 ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g  508 (697)
T PLN03081        432 VLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHK  508 (697)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999986 699999999999999999999999999999876   47899999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCcCCCCCcccccC
Q 014507          360 QLNRALEFLIDLERDGFMV-GKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKIPGSRSIAL  423 (423)
Q Consensus       360 ~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~~~~  423 (423)
                      +++.|..+++++.+  +.| +..+|..|++.|++.|++++|.+++++|+++++ .+.||+||+++
T Consensus       509 ~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~-~k~~g~s~i~~  570 (697)
T PLN03081        509 NLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL-SMHPACTWIEV  570 (697)
T ss_pred             CcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCC-ccCCCeeEEEE
Confidence            99999999999875  445 578999999999999999999999999999887 57799999874

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=7.8e-54  Score=438.06  Aligned_cols=356  Identities=18%  Similarity=0.189  Sum_probs=320.8

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCC---------------------------------cceeeeeeccccchH-HHHH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDT---------------------------------SMFTWIQIGPNITEE-QKQA   91 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~---------------------------------~~~~~~~l~~~~~~~-~~~~   91 (423)
                      ++.|++++|+.+  |++|.+.|+.|+.                                 +.++||+++.+|++. +.+.
T Consensus       163 ~~~g~~~~A~~~--f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~  240 (857)
T PLN03077        163 AKAGYFDEALCL--YHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVS  240 (857)
T ss_pred             HhCCCHHHHHHH--HHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHH
Confidence            778889999888  8998888888764                                 124556677777754 4488


Q ss_pred             HhcCChhhhhhhHHHHHHHHhccCCCCCHHHHHHHHHHh----cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccC
Q 014507           92 ISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRF----MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFE  167 (423)
Q Consensus        92 a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~  167 (423)
                      |..+|++|+++|.++||.+|.+|++.|++++|+++|.+|    +.||..||+.++.+|++.|+.+.+.+++..+.+.|+.
T Consensus       241 A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~  320 (857)
T PLN03077        241 ARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFA  320 (857)
T ss_pred             HHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Confidence            999999999999999999999999999999999999998    6899999999999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014507          168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMV  247 (423)
Q Consensus       168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li  247 (423)
                      ||..+||.+|.+|++.|++++|.++|++|.+    ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++
T Consensus       321 ~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll  396 (857)
T PLN03077        321 VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVL  396 (857)
T ss_pred             cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHH
Confidence            9999999999999999999999999999875    488899999999999999999999999999999999999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----------------------
Q 014507          248 MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG----------------------  305 (423)
Q Consensus       248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g----------------------  305 (423)
                      .+|++.|+++.|.++++.|.+.|+.|+..+|+.||++|++.|++++|.++|++|.+.+                      
T Consensus       397 ~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~  476 (857)
T PLN03077        397 SACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALI  476 (857)
T ss_pred             HHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999999999999888888888888888888888888877664321                      


Q ss_pred             --------C-----------------------------------------------------------------CCCHHH
Q 014507          306 --------I-----------------------------------------------------------------TPDARM  312 (423)
Q Consensus       306 --------~-----------------------------------------------------------------~p~~~~  312 (423)
                              +                                                                 .||..+
T Consensus       477 lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s  556 (857)
T PLN03077        477 FFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVS  556 (857)
T ss_pred             HHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhh
Confidence                    1                                                                 456677


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HCCCCcCHHHHHHHHHHHH
Q 014507          313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE-RDGFMVGKEASCTLAAWFK  391 (423)
Q Consensus       313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~~~~~~~~~l~~~~~  391 (423)
                      ||++|.+|+++|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|. +.|+.|+..+|+.++++|+
T Consensus       557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~  636 (857)
T PLN03077        557 WNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG  636 (857)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Confidence            889999999999999999999999999999999999999999999999999999999999 5699999999999999999


Q ss_pred             HcCCHHHHHHHHHHhc
Q 014507          392 RLGVVEEVEHVLREYG  407 (423)
Q Consensus       392 ~~g~~~~A~~~~~~m~  407 (423)
                      +.|++++|.+++++|+
T Consensus       637 r~G~~~eA~~~~~~m~  652 (857)
T PLN03077        637 RAGKLTEAYNFINKMP  652 (857)
T ss_pred             hCCCHHHHHHHHHHCC
Confidence            9999999999999995

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=2.9e-53  Score=433.89  Aligned_cols=358  Identities=18%  Similarity=0.177  Sum_probs=336.7

Q ss_pred             hhhhcCchhhHhhhhhcccccccccCCCc---------------------------------ceeeeeeccccchHH-HH
Q 014507           45 WSRSLRSGPALEAIKAEDMGKTQVKDDTS---------------------------------MFTWIQIGPNITEEQ-KQ   90 (423)
Q Consensus        45 ~~~~~~~~~a~~~~~~~~m~~~g~~~~~~---------------------------------~~~~~~l~~~~~~~~-~~   90 (423)
                      +++.|++++|+.+  |++|.+.|+.|+..                                 ...+|+++..|++.+ .+
T Consensus        61 l~~~g~~~~A~~l--~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~  138 (857)
T PLN03077         61 LCSHGQLEQALKL--LESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELV  138 (857)
T ss_pred             HHhCCCHHHHHHH--HHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChH
Confidence            3888999999988  99999988777651                                 123466666667543 48


Q ss_pred             HHhcCChhhhhhhHHHHHHHHhccCCCCCHHHHHHHHHHh----cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhccc
Q 014507           91 AISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRF----MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESF  166 (423)
Q Consensus        91 ~a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~  166 (423)
                      .|..+|++|+++|+.+||.+|.+|++.|++++|+++|++|    +.||..||+.++++|+..++...+.+++..+.+.|+
T Consensus       139 ~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~  218 (857)
T PLN03077        139 HAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGF  218 (857)
T ss_pred             HHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCC
Confidence            8999999999999999999999999999999999999998    679999999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507          167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM  246 (423)
Q Consensus       167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  246 (423)
                      .||..+||.+|.+|+++|++++|.++|++|.+    ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+
T Consensus       219 ~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~l  294 (857)
T PLN03077        219 ELDVDVVNALITMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSV  294 (857)
T ss_pred             CcccchHhHHHHHHhcCCCHHHHHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHH
Confidence            99999999999999999999999999999975    48999999999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507          247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS  326 (423)
Q Consensus       247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  326 (423)
                      +.+|++.|+.+.|.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|.    .||..+||.+|.+|++.|++
T Consensus       295 l~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~  370 (857)
T PLN03077        295 ISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLP  370 (857)
T ss_pred             HHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCH
Confidence            99999999999999999999999999999999999999999999999999999997    68999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          327 QKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       327 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      ++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+++|+++|++++|.++|++|
T Consensus       371 ~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m  450 (857)
T PLN03077        371 DKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNI  450 (857)
T ss_pred             HHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCc
Q 014507          407 GLRETY  412 (423)
Q Consensus       407 ~~~~~~  412 (423)
                      .+.+.+
T Consensus       451 ~~~d~v  456 (857)
T PLN03077        451 PEKDVI  456 (857)
T ss_pred             CCCCee
Confidence            987654

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.91  E-value=7.5e-21  Score=197.76  Aligned_cols=309  Identities=10%  Similarity=0.034  Sum_probs=191.4

Q ss_pred             HHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhh
Q 014507           90 QAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKLMEHPLYLQVAELALLE  163 (423)
Q Consensus        90 ~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  163 (423)
                      +.+..+++++.+   .+...|..+...+.+.|++++|++.|+++.  .| +...+..+...+...|+.+.|...+..+.+
T Consensus       584 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  663 (899)
T TIGR02917       584 KKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALE  663 (899)
T ss_pred             HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            444444444432   234455555555556666666666665542  22 234455555555556666666555555544


Q ss_pred             cccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014507          164 ESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY  243 (423)
Q Consensus       164 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~  243 (423)
                      .. +.+...+..+...+...|++++|.++++.+.+.+. .+...+..+...+.+.|++++|.+.|+++...+  |+..++
T Consensus       664 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~  739 (899)
T TIGR02917       664 LK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNA  739 (899)
T ss_pred             cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHH
Confidence            32 23455556666666666666666666666655532 245555666666666666666666666666543  333555


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507          244 GSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMA  323 (423)
Q Consensus       244 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  323 (423)
                      ..+..++.+.|++++|.+.++++.+... .+...+..+...|.+.|+.++|.++|+++.+.. +.+...++.+...+...
T Consensus       740 ~~l~~~~~~~g~~~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~  817 (899)
T TIGR02917       740 IKLHRALLASGNTAEAVKTLEAWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLEL  817 (899)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence            5566666666666666666666665533 256666666777777777777777777776553 34566677777777777


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          324 GQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVL  403 (423)
Q Consensus       324 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~  403 (423)
                      |+ .+|++.+++..+.. +-+..++..+...+...|++++|.+.++++.+.+. .+..++..+..++.+.|++++|.+++
T Consensus       818 ~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~  894 (899)
T TIGR02917       818 KD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP-EAAAIRYHLALALLATGRKAEARKEL  894 (899)
T ss_pred             Cc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CChHHHHHHHHHHHHcCCHHHHHHHH
Confidence            77 66777777766532 12345566677777778888888888888877653 37777778888888888888888888


Q ss_pred             HHhc
Q 014507          404 REYG  407 (423)
Q Consensus       404 ~~m~  407 (423)
                      ++|.
T Consensus       895 ~~~~  898 (899)
T TIGR02917       895 DKLL  898 (899)
T ss_pred             HHHh
Confidence            8775

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.90  E-value=2.4e-20  Score=193.97  Aligned_cols=351  Identities=15%  Similarity=0.045  Sum_probs=211.9

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLS  121 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~  121 (423)
                      +..|++++|+..  ++++.+.  .|+. ..+|+.+...+.. ++.+.|...|+++.+   .+...+..+...+...|+++
T Consensus       442 ~~~~~~~~A~~~--~~~~~~~--~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~  516 (899)
T TIGR02917       442 LRSGQFDKALAA--AKKLEKK--QPDN-ASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPD  516 (899)
T ss_pred             HhcCCHHHHHHH--HHHHHHh--CCCC-cHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHH
Confidence            455566666555  5554432  2221 1344555554443 334556666655533   23344555556666666666


Q ss_pred             HHHHHHHHhc--C-CChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 014507          122 DLLAAWVRFM--K-PRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKR  198 (423)
Q Consensus       122 ~a~~~~~~~~--~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  198 (423)
                      +|.+.|+++.  . .+..++..+...+.+.|+.+++...+..+...+ +.+...+..++..+.+.|++++|..+++.+.+
T Consensus       517 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  595 (899)
T TIGR02917       517 DAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAAD  595 (899)
T ss_pred             HHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6666666652  2 233555566666666666666666666555443 33445555666666666666666666666665


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 014507          199 RGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVY  278 (423)
Q Consensus       199 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  278 (423)
                      .. +.+...|..+...+.+.|++++|...|+++.+.. +.+...+..+..++.+.|++++|...++++.+.... +..++
T Consensus       596 ~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~  672 (899)
T TIGR02917       596 AA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD-NTEAQ  672 (899)
T ss_pred             cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHH
Confidence            42 3355666666677777777777777776666543 334556666666666677777777777666654322 45566


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507          279 KALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKE  358 (423)
Q Consensus       279 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  358 (423)
                      ..+...+...|++++|.++++.+...+ +++...+..+...+...|++++|.+.|+.+.+.  .|+..++..+...+.+.
T Consensus       673 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~  749 (899)
T TIGR02917       673 IGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLAS  749 (899)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHC
Confidence            666666666677777777766666553 335556666666667777777777777766653  24445566666666677


Q ss_pred             CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          359 NQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       359 g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      |++++|.+.++++.+. .+.+...+..+...|.+.|++++|.++|+++.+.
T Consensus       750 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~  799 (899)
T TIGR02917       750 GNTAEAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK  799 (899)
T ss_pred             CCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence            7777777777666654 2345666666777777777777777777766543

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.90  E-value=3e-20  Score=174.64  Aligned_cols=296  Identities=15%  Similarity=0.114  Sum_probs=246.8

Q ss_pred             ccCCCCCHHHHHHHHHHhc--CCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCC---HHHHHHHHHHHHccCCH
Q 014507          113 VSPETGNLSDLLAAWVRFM--KPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEAN---IRDYTKIIHGYGKKMQI  186 (423)
Q Consensus       113 ~~~~~g~~~~a~~~~~~~~--~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~  186 (423)
                      .+...|++++|++.|.++.  .|+. .++..+...+...|+++.|..+++.+...+..++   ...+..+...+.+.|++
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence            4457899999999999984  4543 5788888899999999999999998887543222   35678889999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHH
Q 014507          187 QNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK----RSYGSMVMAYVRAGMLDRGEVL  262 (423)
Q Consensus       187 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~  262 (423)
                      ++|..+|+++.+.. +++..++..++..+.+.|++++|.+.++.+.+.+..++.    ..+..+...+.+.|++++|...
T Consensus       124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  202 (389)
T PRK11788        124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL  202 (389)
T ss_pred             HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99999999998863 346788999999999999999999999999886533322    2456677888999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507          263 LREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE  342 (423)
Q Consensus       263 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  342 (423)
                      |+++.+.... +...+..+...+.+.|++++|.++++++...+......+++.++.+|...|++++|.+.++++.+.  .
T Consensus       203 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~  279 (389)
T PRK11788        203 LKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--Y  279 (389)
T ss_pred             HHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--C
Confidence            9999886532 566888899999999999999999999987532223467889999999999999999999999885  5


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH---cCCHHHHHHHHHHhcccCCcCC
Q 014507          343 PSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR---LGVVEEVEHVLREYGLRETYSK  414 (423)
Q Consensus       343 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~  414 (423)
                      |+...+..+...+.+.|++++|..+++++.+.  .|+...+..++..+..   .|+.+++..++++|.++.+.++
T Consensus       280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~  352 (389)
T PRK11788        280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK  352 (389)
T ss_pred             CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence            77777788999999999999999999998875  5888899988888775   5689999999999998777555

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.88  E-value=9.4e-20  Score=171.31  Aligned_cols=289  Identities=13%  Similarity=0.075  Sum_probs=241.3

Q ss_pred             HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHhcC-CC------hhhHHHHHHHHHhcCCchHHHH
Q 014507           87 EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRFMK-PR------RADWLAVLKQLKLMEHPLYLQV  156 (423)
Q Consensus        87 ~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-p~------~~~~~~ll~~~~~~~~~~~a~~  156 (423)
                      ++.+.|...|+++.+   .+..+|..+...+...|++++|++.++.+.. |+      ...+..+...+...|+++.|..
T Consensus        49 ~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~  128 (389)
T PRK11788         49 EQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEE  128 (389)
T ss_pred             CChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence            445667777877765   2445788888999999999999999998743 32      1457788889999999999999


Q ss_pred             HHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          157 AELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ----VTLTVMVVMYSKAGNLKMAEETFEEIK  232 (423)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~  232 (423)
                      ++..+.+.. +++..+++.++..+.+.|++++|.+.++.+.+.+..+..    ..+..+...+.+.|++++|...|+++.
T Consensus       129 ~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al  207 (389)
T PRK11788        129 LFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKAL  207 (389)
T ss_pred             HHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            999988753 457788999999999999999999999999887644322    245667788899999999999999998


Q ss_pred             HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 014507          233 LLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARM  312 (423)
Q Consensus       233 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~  312 (423)
                      +.. +.+...+..+...+.+.|++++|.+.++++.+.+......+++.++.+|.+.|++++|.+.++.+.+.  .|+...
T Consensus       208 ~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~  284 (389)
T PRK11788        208 AAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE--YPGADL  284 (389)
T ss_pred             hHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCchH
Confidence            864 34567888899999999999999999999998654433567889999999999999999999999876  567677


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCcCHH
Q 014507          313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEK---ENQLNRALEFLIDLERDGFMVGKE  381 (423)
Q Consensus       313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~  381 (423)
                      +..++..+.+.|++++|.++++++.+.  .|+..++..++..+..   .|+.+++..++++|.+.++.|++.
T Consensus       285 ~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        285 LLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            789999999999999999999998874  6999899988887764   558999999999999887777765

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.80  E-value=9.5e-16  Score=151.83  Aligned_cols=318  Identities=13%  Similarity=0.014  Sum_probs=165.3

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSD  122 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~  122 (423)
                      .++|+++.|+.+  ++.....  .|+.+...++..+.....++.+.|...++++.+   .+...|..+...+.+.|++++
T Consensus        53 ~~~g~~~~A~~l--~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~  128 (656)
T PRK15174         53 LRKDETDVGLTL--LSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYAT  128 (656)
T ss_pred             HhcCCcchhHHH--hHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHH
Confidence            556666666666  5544432  233222333333333334444555555555543   233445555555566666666


Q ss_pred             HHHHHHHh--cCCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 014507          123 LLAAWVRF--MKPR-RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR  199 (423)
Q Consensus       123 a~~~~~~~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  199 (423)
                      |++.+++.  ..|+ ...+..+...+...|+.++|...+..+......+ ...+..+ ..+...|++++|...++.+.+.
T Consensus       129 Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~  206 (656)
T PRK15174        129 VADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPF  206 (656)
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhc
Confidence            66666665  2233 2445555555666666666665555444433222 2222222 2345556666666666665554


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH----HHHHHHHHHhCCCCCCH
Q 014507          200 GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDR----GEVLLREMDAQEVYVGS  275 (423)
Q Consensus       200 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~----a~~~~~~m~~~~~~p~~  275 (423)
                      ...++...+..+...+.+.|++++|...|++..+.. +.+...+..+...+...|++++    |...|++..+.... +.
T Consensus       207 ~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~  284 (656)
T PRK15174        207 FALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NV  284 (656)
T ss_pred             CCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CH
Confidence            322333334444555556666666666666665543 2345555556666666666554    55666665554322 44


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHH
Q 014507          276 EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDK-CVALILSA  354 (423)
Q Consensus       276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~  354 (423)
                      ..+..+...+.+.|++++|...+++..... +.+...+..+..++.+.|++++|.+.++.+.+.  .|+.. .+..+..+
T Consensus       285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~a  361 (656)
T PRK15174        285 RIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAA  361 (656)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHH
Confidence            556666666666666666666666655532 123444555556666666666666666665543  23322 22223445


Q ss_pred             HHHcCCHHHHHHHHHHHHHC
Q 014507          355 CEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       355 ~~~~g~~~~a~~~~~~m~~~  374 (423)
                      +...|+.++|...|++..+.
T Consensus       362 l~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        362 LLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHh
Confidence            55666666666666665543

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.79  E-value=7.7e-16  Score=152.49  Aligned_cols=315  Identities=13%  Similarity=0.063  Sum_probs=252.4

Q ss_pred             hHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHHHH
Q 014507           86 EEQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVAEL  159 (423)
Q Consensus        86 ~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~  159 (423)
                      .+..+.|..+++....   .+...+..+..+....|+++.|++.+++.  ..|+. ..+..+...+...|+.+.|...+.
T Consensus        55 ~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~  134 (656)
T PRK15174         55 KDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAE  134 (656)
T ss_pred             cCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4455667777766643   34455666667777899999999999998  45654 567778888899999999999999


Q ss_pred             HHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 014507          160 ALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD  239 (423)
Q Consensus       160 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~  239 (423)
                      ..++.. +.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++.+.+....++
T Consensus       135 ~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~  211 (656)
T PRK15174        135 QAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALER  211 (656)
T ss_pred             HHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcc
Confidence            887763 446778889999999999999999999988776444 33344333 347889999999999999887643345


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH----HHHHHHHHHHCCCCCCHHHHHH
Q 014507          240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEG----AQRVFEAIQFAGITPDARMCAL  315 (423)
Q Consensus       240 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~g~~p~~~~~~~  315 (423)
                      ...+..+..++...|++++|...+++..+.... +...+..+...+...|++++    |...|++..... +.+...+..
T Consensus       212 ~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~~~~a~~~  289 (656)
T PRK15174        212 QESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SDNVRIVTL  289 (656)
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CCCHHHHHH
Confidence            556666778899999999999999999987643 67788889999999999986    899999988753 336778999


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH-HHHHHHHHHHHHc
Q 014507          316 LINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVGK-EASCTLAAWFKRL  393 (423)
Q Consensus       316 li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~-~~~~~l~~~~~~~  393 (423)
                      +...+...|++++|...+++..+.  .|+ ...+..+...+.+.|++++|...++++.+.  .|+. ..+..+..++...
T Consensus       290 lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~  365 (656)
T PRK15174        290 YADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQA  365 (656)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHC
Confidence            999999999999999999999874  454 567778889999999999999999999875  3443 3444567788999


Q ss_pred             CCHHHHHHHHHHhccc
Q 014507          394 GVVEEVEHVLREYGLR  409 (423)
Q Consensus       394 g~~~~A~~~~~~m~~~  409 (423)
                      |+.++|.+.|++..+.
T Consensus       366 G~~deA~~~l~~al~~  381 (656)
T PRK15174        366 GKTSEAESVFEHYIQA  381 (656)
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            9999999999987554

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.77  E-value=2.7e-15  Score=148.81  Aligned_cols=352  Identities=13%  Similarity=-0.036  Sum_probs=261.6

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLS  121 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~  121 (423)
                      ...|++++|+..  |++.++  +.|+.  ..|..+..+|.+ ++++.|...+++..+   .+...|..+..++...|+++
T Consensus       138 ~~~~~~~~Ai~~--y~~al~--~~p~~--~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~  211 (615)
T TIGR00990       138 YRNKDFNKAIKL--YSKAIE--CKPDP--VYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA  211 (615)
T ss_pred             HHcCCHHHHHHH--HHHHHh--cCCch--HHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence            677899999999  888664  56664  455556566664 555777777776654   35567888888999999999


Q ss_pred             HHHHHHHHhc--------------------------------CCCh-hhHHHHHHHH-----------------------
Q 014507          122 DLLAAWVRFM--------------------------------KPRR-ADWLAVLKQL-----------------------  145 (423)
Q Consensus       122 ~a~~~~~~~~--------------------------------~p~~-~~~~~ll~~~-----------------------  145 (423)
                      +|+.-|....                                .|.. ..+..+...+                       
T Consensus       212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (615)
T TIGR00990       212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG  291 (615)
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence            9987654321                                0100 0000000000                       


Q ss_pred             -------------HhcCCchHHHHHHHHHhhcc-c-CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507          146 -------------KLMEHPLYLQVAELALLEES-F-EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTV  210 (423)
Q Consensus       146 -------------~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  210 (423)
                                   ...+++++|...+...++.+ . +.+...|+.+...+...|++++|+..+++..+.... +...|..
T Consensus       292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~  370 (615)
T TIGR00990       292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIK  370 (615)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHH
Confidence                         01235566677777766654 2 334567888888999999999999999999887432 4668888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507          211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN  290 (423)
Q Consensus       211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  290 (423)
                      +...+...|++++|...|++..+.. +.+..+|..+...+...|++++|...|++..+.... +...+..+...+.+.|+
T Consensus       371 la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~  448 (615)
T TIGR00990       371 RASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGS  448 (615)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCC
Confidence            9999999999999999999998864 446788999999999999999999999999987543 67788889999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--C---CH-HHHHHHHHHHHHcCCHHHH
Q 014507          291 SEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE--P---SD-KCVALILSACEKENQLNRA  364 (423)
Q Consensus       291 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p---~~-~~~~~li~~~~~~g~~~~a  364 (423)
                      +++|+..|+...... +.+...|+.+..++...|++++|.+.|++..+..-.  +   +. ..++.....+...|++++|
T Consensus       449 ~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA  527 (615)
T TIGR00990       449 IASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA  527 (615)
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence            999999999988652 336788999999999999999999999998874211  1   11 1122222233446999999


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          365 LEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       365 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      ..++++..+.. +.+...+..+...+.+.|++++|.+.|++..+
T Consensus       528 ~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~  570 (615)
T TIGR00990       528 ENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAE  570 (615)
T ss_pred             HHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            99999988753 23455788999999999999999999988643

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.74  E-value=2.4e-16  Score=144.10  Aligned_cols=282  Identities=12%  Similarity=0.079  Sum_probs=182.2

Q ss_pred             HHHHHHhccCCCCCHHHHHHHHHHhcCCCh---hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHc
Q 014507          106 FVKQIICVSPETGNLSDLLAAWVRFMKPRR---ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGK  182 (423)
Q Consensus       106 ~~~~ll~~~~~~g~~~~a~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~  182 (423)
                      .|..|-..+-..|+...|+..|++.++.|.   .+|-.|...+...+.++.|...+...+... +-....|..+...|-.
T Consensus       220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYye  298 (966)
T KOG4626|consen  220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYE  298 (966)
T ss_pred             eehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEec
Confidence            455566666666777777777777644333   567777777777777777766655443321 2234556666666777


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014507          183 KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVL  262 (423)
Q Consensus       183 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~  262 (423)
                      .|++|.|+..+++..+.... =...|+.|..++-..|+..+|.+.|++..... +.-....+.|...|...|.++.|..+
T Consensus       299 qG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~l  376 (966)
T KOG4626|consen  299 QGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRL  376 (966)
T ss_pred             cccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHH
Confidence            77777777777777665322 24567777777777777777777777776653 33455666777777777777777777


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507          263 LREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD-ARMCALLINAYQMAGQSQKAYTAFQNMRKAGL  341 (423)
Q Consensus       263 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  341 (423)
                      |....+-... -...++.|...|-+.|++++|...+++...  +.|+ ...|+.+-..|-..|+.+.|...+.+.+.  +
T Consensus       377 y~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~--~  451 (966)
T KOG4626|consen  377 YLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ--I  451 (966)
T ss_pred             HHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh--c
Confidence            7776664222 244667777777777777777777777665  3553 45677777777777777777777777665  4


Q ss_pred             CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHH
Q 014507          342 EPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVG-KEASCTLAAWFKRLGVVE  397 (423)
Q Consensus       342 ~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~  397 (423)
                      .|. ...++.|...|-.+|++.+|+.-+++..+  ++|| +..|..++.++.--.+|.
T Consensus       452 nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDfpdA~cNllh~lq~vcdw~  507 (966)
T KOG4626|consen  452 NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDFPDAYCNLLHCLQIVCDWT  507 (966)
T ss_pred             CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCCchhhhHHHHHHHHHhccc
Confidence            454 45677777777777777777777777666  3454 445555665554433333

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=2e-14  Score=126.29  Aligned_cols=309  Identities=11%  Similarity=0.085  Sum_probs=222.3

Q ss_pred             hhHHHHHHHHhccCCCCCHHHHHHHHHHh----cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHH
Q 014507          102 RCKAFVKQIICVSPETGNLSDLLAAWVRF----MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKII  177 (423)
Q Consensus       102 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li  177 (423)
                      ++-.+|.+||.++++-...++|.+++.+.    .+.+..+||.++.+-.-...    +.+..+|......||..|+|+++
T Consensus       205 KT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL  280 (625)
T KOG4422|consen  205 KTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALL  280 (625)
T ss_pred             CCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHH
Confidence            34468888999888888889999988875    66788888888877654333    66777888888899999999999


Q ss_pred             HHHHccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHc--C--CCC----CHHHHH
Q 014507          178 HGYGKKMQIQN----AENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKM-AEETFEEIKLL--G--EPL----DKRSYG  244 (423)
Q Consensus       178 ~~~~~~~~~~~----a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~--g--~~~----~~~~~~  244 (423)
                      .+..+.|+++.    |.+++.+|++.|+.|...+|..+|..+++.++..+ |..+..++...  |  ++|    |..-|.
T Consensus       281 ~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~  360 (625)
T KOG4422|consen  281 SCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQ  360 (625)
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHH
Confidence            99999987764    46778888888999999999999888888887644 45555555431  2  222    345577


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhCC----CCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014507          245 SMVMAYVRAGMLDRGEVLLREMDAQE----VYVG---SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLI  317 (423)
Q Consensus       245 ~li~~~~~~~~~~~a~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li  317 (423)
                      ..|..|.+..+.+-|.++..-+....    +.|+   ..-|..+....|+....+.-...|+.|+-.-.-|+..+...++
T Consensus       361 ~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~l  440 (625)
T KOG4422|consen  361 SAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLL  440 (625)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHH
Confidence            78888888888888888776665421    2333   2245667777888888888888888888776778888888899


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CH--------------------HHHHHHHHHHHHCCC
Q 014507          318 NAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN-QL--------------------NRALEFLIDLERDGF  376 (423)
Q Consensus       318 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------------------~~a~~~~~~m~~~g~  376 (423)
                      ++....|+++-.-++|.+++..|...+...-.-++..+++.. ..                    +....--.+|.+  .
T Consensus       441 rA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--~  518 (625)
T KOG4422|consen  441 RALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--Q  518 (625)
T ss_pred             HHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--c
Confidence            999999999999999999988774444433333444444332 10                    111111112232  3


Q ss_pred             CcCHHHHHHHHHHHHHcCCHHHHHHHHHHh-cccCCcCCCC
Q 014507          377 MVGKEASCTLAAWFKRLGVVEEVEHVLREY-GLRETYSKIP  416 (423)
Q Consensus       377 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m-~~~~~~~~~~  416 (423)
                      +......+...-.+.+.|+.++|.++|..+ ++++.++..|
T Consensus       519 ~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p  559 (625)
T KOG4422|consen  519 DWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSP  559 (625)
T ss_pred             cCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCc
Confidence            445566777888899999999999999998 6667777666

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.73  E-value=1.3e-13  Score=136.97  Aligned_cols=298  Identities=10%  Similarity=-0.022  Sum_probs=236.5

Q ss_pred             HHHHHHhccCCCCCHHHHHHHHHHh--cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHcc
Q 014507          106 FVKQIICVSPETGNLSDLLAAWVRF--MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKK  183 (423)
Q Consensus       106 ~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  183 (423)
                      .+......+.+.|++++|++.|++.  ..|+...|..+..++...|+++.|...+...++.. +.+...|..+..++...
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHc
Confidence            4556677888999999999999997  56888889999999999999999999988887764 34667888899999999


Q ss_pred             CCHHHHHHHHHHHHHcCC----------------------------CC-CHHHHHHH-----------------------
Q 014507          184 MQIQNAENTLLAMKRRGF----------------------------IC-DQVTLTVM-----------------------  211 (423)
Q Consensus       184 ~~~~~a~~~~~~m~~~g~----------------------------~p-~~~~~~~l-----------------------  211 (423)
                      |++++|..-|......+.                            .| +...+..+                       
T Consensus       208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (615)
T TIGR00990       208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD  287 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence            999999876654432210                            00 00000000                       


Q ss_pred             -------HHHH------HHcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 014507          212 -------VVMY------SKAGNLKMAEETFEEIKLLG-EPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSE  276 (423)
Q Consensus       212 -------i~~~------~~~g~~~~A~~~~~~m~~~g-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  276 (423)
                             +..+      ...+++++|.+.|++..+.+ ..| ....|..+...+...|++++|...+++..+.... ...
T Consensus       288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~  366 (615)
T TIGR00990       288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQ  366 (615)
T ss_pred             cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHH
Confidence                   0000      11257889999999998765 223 4567888888999999999999999999886432 466


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSAC  355 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~  355 (423)
                      .|..+...+...|++++|...|++..+.. +.+...|..+...+...|++++|...|++..+.  .| +...+..+...+
T Consensus       367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~la~~~  443 (615)
T TIGR00990       367 SYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQLGVTQ  443 (615)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHHHHHHH
Confidence            88899999999999999999999988753 336788999999999999999999999999874  45 467788888899


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          356 EKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       356 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      .+.|++++|...+++..+. .+.+...++.+...+...|++++|.+.|++..+.
T Consensus       444 ~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       444 YKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             HHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            9999999999999998875 3456888999999999999999999999986543

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.72  E-value=9.6e-16  Score=140.19  Aligned_cols=225  Identities=16%  Similarity=0.165  Sum_probs=136.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHH
Q 014507          173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD-KRSYGSMVMAYV  251 (423)
Q Consensus       173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~  251 (423)
                      |-.|.+.|...+.++.|...+.+....... ....|..+...|...|++|.|+..|++..+.  .|+ ...|+.|..++-
T Consensus       255 YiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALk  331 (966)
T KOG4626|consen  255 YINLGNVYKEARIFDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALK  331 (966)
T ss_pred             HhhHHHHHHHHhcchHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHH
Confidence            333334444444444444444333332111 2333444444444555566666666555553  333 345666666666


Q ss_pred             HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 014507          252 RAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAY  330 (423)
Q Consensus       252 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~  330 (423)
                      ..|++.+|++.|.+....... .....+.|...|...|.++.|..+|....+-  .| -....|.|...|-++|++++|.
T Consensus       332 d~G~V~ea~~cYnkaL~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai  408 (966)
T KOG4626|consen  332 DKGSVTEAVDCYNKALRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAI  408 (966)
T ss_pred             hccchHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHH
Confidence            666666666666666654322 3445666666666666666666666665542  33 3455677777777777777777


Q ss_pred             HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          331 TAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVG-KEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       331 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      ..|++...  +.|+ ...|+.+...|...|+.+.|...+.+.+..  .|. .+..+.|...|...|+..+|++-|++-.
T Consensus       409 ~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aL  483 (966)
T KOG4626|consen  409 MCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTAL  483 (966)
T ss_pred             HHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHH
Confidence            77777765  6676 456777777777777887777777777663  343 5667778888888888888888877654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.72  E-value=3.7e-14  Score=149.84  Aligned_cols=352  Identities=9%  Similarity=-0.048  Sum_probs=234.1

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhhhh-----HHHHHH----------
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTKRC-----KAFVKQ----------  109 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~~~-----~~~~~~----------  109 (423)
                      ...|++++|+..  |++..+  ..|+. ...+..+..++.+ ++.+.|...|++..+.+     ...|..          
T Consensus       280 ~~~g~~~~A~~~--l~~aL~--~~P~~-~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~  354 (1157)
T PRK11447        280 VDSGQGGKAIPE--LQQAVR--ANPKD-SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLL  354 (1157)
T ss_pred             HHCCCHHHHHHH--HHHHHH--hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHH
Confidence            677888888888  777665  35543 2445556565553 45577777777665411     111211          


Q ss_pred             --HHhccCCCCCHHHHHHHHHHh--cCCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHH---------
Q 014507          110 --IICVSPETGNLSDLLAAWVRF--MKPR-RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTK---------  175 (423)
Q Consensus       110 --ll~~~~~~g~~~~a~~~~~~~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---------  175 (423)
                        ....+.+.|++++|++.|++.  ..|+ ...+..+...+...|+.++|...++..++... .+...+..         
T Consensus       355 ~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~~~~  433 (1157)
T PRK11447        355 IQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYRQQS  433 (1157)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcC
Confidence              123556788888888888887  3343 35666677788888888888888887776532 22222222         


Q ss_pred             ---------------------------------HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 014507          176 ---------------------------------IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLK  222 (423)
Q Consensus       176 ---------------------------------li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  222 (423)
                                                       +...+...|++++|.+.+++..+.... +...+..+...|.+.|+++
T Consensus       434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~  512 (1157)
T PRK11447        434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRS  512 (1157)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence                                             233345568888888888887776433 5666777888888888888


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC---------------------------------
Q 014507          223 MAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ---------------------------------  269 (423)
Q Consensus       223 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------------------------------  269 (423)
                      +|...++++.+.. +.+...+..+...+...++.++|...++.+...                                 
T Consensus       513 ~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e  591 (1157)
T PRK11447        513 QADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE  591 (1157)
T ss_pred             HHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence            8888888877643 223333333333334444555544444332110                                 


Q ss_pred             ------CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 014507          270 ------EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP  343 (423)
Q Consensus       270 ------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  343 (423)
                            ..+.+...+..+...+.+.|+.++|.+.|+...... +.+...+..+...|...|++++|.+.++...+.  .|
T Consensus       592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p  668 (1157)
T PRK11447        592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--AN  668 (1157)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence                  012344566677788888899999999998888753 336778888899999999999999999977653  34


Q ss_pred             -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--Cc---CHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          344 -SDKCVALILSACEKENQLNRALEFLIDLERDGF--MV---GKEASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       344 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                       +......+..++...|++++|.++++++.....  +|   +...+..+...+...|++++|.+.|++...
T Consensus       669 ~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        669 DSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence             355666777788889999999999998876521  22   234566678888899999999999887743

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.68  E-value=4.8e-13  Score=141.52  Aligned_cols=317  Identities=12%  Similarity=0.035  Sum_probs=213.7

Q ss_pred             HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHhc--CCChh---hHHH------------HHHHHH
Q 014507           87 EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRFM--KPRRA---DWLA------------VLKQLK  146 (423)
Q Consensus        87 ~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p~~~---~~~~------------ll~~~~  146 (423)
                      ++.+.|...|++..+   .+...+..+...+.+.|++++|++.|++..  .|+..   .|..            ....+.
T Consensus       283 g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~  362 (1157)
T PRK11447        283 GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAAL  362 (1157)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHH
Confidence            334666666666544   356677788888888899999998888863  34321   1211            123556


Q ss_pred             hcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH---------------
Q 014507          147 LMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVM---------------  211 (423)
Q Consensus       147 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l---------------  211 (423)
                      +.|++++|...++..++.. +.+...+..+...+...|++++|++.|++..+.... +...+..+               
T Consensus       363 ~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~~~~~~~A~~~  440 (1157)
T PRK11447        363 KANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYRQQSPEKALAF  440 (1157)
T ss_pred             HCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCHHHHHHH
Confidence            7888888888888877764 345667777888888899999999999888775322 23333222               


Q ss_pred             ---------------------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014507          212 ---------------------------VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLR  264 (423)
Q Consensus       212 ---------------------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~  264 (423)
                                                 ...+...|++++|.+.|++..+.. +-+...+..+...|.+.|++++|...++
T Consensus       441 l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~  519 (1157)
T PRK11447        441 IASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMR  519 (1157)
T ss_pred             HHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                       233445678888888888887754 3356667778888888888888888888


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---------------------------------------C
Q 014507          265 EMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA---------------------------------------G  305 (423)
Q Consensus       265 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------------------g  305 (423)
                      ++.+.... +...+..+...+...++.++|...++.+...                                       .
T Consensus       520 ~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~  598 (1157)
T PRK11447        520 RLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ  598 (1157)
T ss_pred             HHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence            87764332 3333332223333344444444433322100                                       0


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH
Q 014507          306 ITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCT  385 (423)
Q Consensus       306 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~  385 (423)
                      .+.+...+..+...+.+.|++++|.+.|++..+.. +-+...+..+...+...|++++|.+.++.+.+. -+.+...+..
T Consensus       599 ~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~-~p~~~~~~~~  676 (1157)
T PRK11447        599 QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT-ANDSLNTQRR  676 (1157)
T ss_pred             CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-CCCChHHHHH
Confidence            13344566677788888899999999999888743 235778888888999999999999999987764 2234566777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHhccc
Q 014507          386 LAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       386 l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      +..++...|++++|.++++++...
T Consensus       677 la~~~~~~g~~~eA~~~~~~al~~  700 (1157)
T PRK11447        677 VALAWAALGDTAAAQRTFNRLIPQ  700 (1157)
T ss_pred             HHHHHHhCCCHHHHHHHHHHHhhh
Confidence            888888999999999999987653

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.67  E-value=2.7e-13  Score=119.30  Aligned_cols=337  Identities=12%  Similarity=0.033  Sum_probs=246.8

Q ss_pred             eeeeeeccccch-HHHHHHhcCChhhhh----hhHHHHHHHHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcC
Q 014507           75 FTWIQIGPNITE-EQKQAISQFPRKMTK----RCKAFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLME  149 (423)
Q Consensus        75 ~~~~~l~~~~~~-~~~~~a~~~~~~m~~----~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~  149 (423)
                      .++.++|.++++ .+.+.|..++++...    .+..++|.+|.+-.-.-+-+-.-++..+-+.||..|||+++.+.++.|
T Consensus       208 et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg  287 (625)
T KOG4422|consen  208 ETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQKMTPNLFTFNALLSCAAKFG  287 (625)
T ss_pred             hhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHhhcCCchHhHHHHHHHHHHhc
Confidence            678889999887 455889999988865    466788888876543333222333333337899999999999999999


Q ss_pred             CchHH----HHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHH-HHHHHHHHHH----cCCCC----CHHHHHHHHHHHH
Q 014507          150 HPLYL----QVAELALLEESFEANIRDYTKIIHGYGKKMQIQN-AENTLLAMKR----RGFIC----DQVTLTVMVVMYS  216 (423)
Q Consensus       150 ~~~~a----~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~~~m~~----~g~~p----~~~~~~~li~~~~  216 (423)
                      +++.+    .++..+|.+-|+.|...+|..+|..+.+.++..+ |..+..++..    ..++|    |...|...+..|.
T Consensus       288 ~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~  367 (625)
T KOG4422|consen  288 KFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICS  367 (625)
T ss_pred             chHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHH
Confidence            88765    6777889999999999999999999999888754 4444444433    22333    5566788899999


Q ss_pred             HcCCHHHHHHHHHHHHHcC----CCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 014507          217 KAGNLKMAEETFEEIKLLG----EPLDK---RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG  289 (423)
Q Consensus       217 ~~g~~~~A~~~~~~m~~~g----~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  289 (423)
                      +..+.+.|.++-.-+....    +.|+.   .-|..+..+.+.....+.-...|+.|.-.-+-|+..+...++.+..-.|
T Consensus       368 ~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~  447 (625)
T KOG4422|consen  368 SLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVAN  447 (625)
T ss_pred             HhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcC
Confidence            9999999988876665422    33442   3467788888899999999999999998888899999999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CH--------------------HHHHHHHHHHHHCCCCCCHHHH
Q 014507          290 NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAG-QS--------------------QKAYTAFQNMRKAGLEPSDKCV  348 (423)
Q Consensus       290 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~--------------------~~a~~~~~~m~~~~~~p~~~~~  348 (423)
                      .++-.-++|..++..|.......-..++..+++.. +.                    +.....-.+|.+..+  .....
T Consensus       448 ~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~~~~--~~t~l  525 (625)
T KOG4422|consen  448 RLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRAQDW--PATSL  525 (625)
T ss_pred             cchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccC--ChhHH
Confidence            99999999999998875554444444445555443 11                    111112223444343  34567


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCC----CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCcC
Q 014507          349 ALILSACEKENQLNRALEFLIDLERDG----FMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYS  413 (423)
Q Consensus       349 ~~li~~~~~~g~~~~a~~~~~~m~~~g----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~  413 (423)
                      +.+.-.+.+.|+.++|.+++..+.+.+    ..|.......+++.-.+..+...|..+++-|...+...
T Consensus       526 ~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~  594 (625)
T KOG4422|consen  526 NCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPI  594 (625)
T ss_pred             HHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchh
Confidence            777778899999999999999996653    23344445567777778899999999999887665543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.66  E-value=8e-13  Score=133.84  Aligned_cols=355  Identities=12%  Similarity=-0.003  Sum_probs=243.4

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLS  121 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~  121 (423)
                      ...|+.++|+..  +.+...  ..|.. ...+..+..++.. ++.+.|..++++..+   .+...+..+...+...|+++
T Consensus        26 ~~~g~~~~A~~~--~~~~~~--~~~~~-a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~  100 (765)
T PRK10049         26 LWAGQDAEVITV--YNRYRV--HMQLP-ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYD  100 (765)
T ss_pred             HHcCCHHHHHHH--HHHHHh--hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence            677888888766  666544  22332 2234555554543 455777777777533   34556667777778888888


Q ss_pred             HHHHHHHHh--cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHH---------
Q 014507          122 DLLAAWVRF--MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAE---------  190 (423)
Q Consensus       122 ~a~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~---------  190 (423)
                      +|+..+++.  ..|+...+..+..++...|+.+.|...++...+..+ .+...+..+..++...+..+.|+         
T Consensus       101 eA~~~l~~~l~~~P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~  179 (765)
T PRK10049        101 EALVKAKQLVSGAPDKANLLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRLSAPALGAIDDANLT  179 (765)
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCC
Confidence            888888886  334433366677777788888888888887777643 24444455555555555555444         


Q ss_pred             -------------------------------------HHHHHHHHc-CCCCCHH-HHH----HHHHHHHHcCCHHHHHHH
Q 014507          191 -------------------------------------NTLLAMKRR-GFICDQV-TLT----VMVVMYSKAGNLKMAEET  227 (423)
Q Consensus       191 -------------------------------------~~~~~m~~~-g~~p~~~-~~~----~li~~~~~~g~~~~A~~~  227 (423)
                                                           +.++.+.+. ...|+.. .+.    ..+.++...|++++|...
T Consensus       180 p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~  259 (765)
T PRK10049        180 PAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISE  259 (765)
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence                                                 444444432 1122211 111    113445677999999999


Q ss_pred             HHHHHHcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507          228 FEEIKLLGEP-LDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV---GSEVYKALLRGYSMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       228 ~~~m~~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  303 (423)
                      |+++.+.+.+ |+. .-..+..+|...|++++|...|+++.+.....   .......+..++...|++++|.++++.+..
T Consensus       260 ~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~  338 (765)
T PRK10049        260 YQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTIN  338 (765)
T ss_pred             HHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhh
Confidence            9999987632 332 22235778999999999999999987654221   134566777788999999999999999886


Q ss_pred             CCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507          304 AGI-----------TPD---ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLI  369 (423)
Q Consensus       304 ~g~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  369 (423)
                      ..-           .|+   ...+..+...+...|+.++|.++++++.... +-+...+..+...+...|++++|++.++
T Consensus       339 ~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~  417 (765)
T PRK10049        339 NSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELK  417 (765)
T ss_pred             cCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            521           123   2345667788899999999999999998752 3357788888899999999999999999


Q ss_pred             HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          370 DLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       370 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      +..... +.+...+......+.+.|++++|..+++++.+.
T Consensus       418 ~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~  456 (765)
T PRK10049        418 KAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR  456 (765)
T ss_pred             HHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence            988853 334677777888899999999999999988653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.65  E-value=2.4e-12  Score=120.43  Aligned_cols=278  Identities=9%  Similarity=-0.033  Sum_probs=216.6

Q ss_pred             CCCHHHHHHHHHHhcCC--Chhh-HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHH--HHHHHHHccCCHHHHHH
Q 014507          117 TGNLSDLLAAWVRFMKP--RRAD-WLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYT--KIIHGYGKKMQIQNAEN  191 (423)
Q Consensus       117 ~g~~~~a~~~~~~~~~p--~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~  191 (423)
                      .|+++.|.+........  +... |.....+..+.|+.+.+...+..+.+.  .|+...+.  .....+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            79999999988876432  2222 323334446799999999999888764  44543333  34678889999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHH
Q 014507          192 TLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK-------RSYGSMVMAYVRAGMLDRGEVLLR  264 (423)
Q Consensus       192 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~  264 (423)
                      .++++.+..+. +......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++++
T Consensus       175 ~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~  253 (398)
T PRK10747        175 GVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWK  253 (398)
T ss_pred             HHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            99999998644 7788999999999999999999999999998754322       133444444445556666777777


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-
Q 014507          265 EMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-  343 (423)
Q Consensus       265 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-  343 (423)
                      .+.+. .+.+......+...+...|+.++|.+++++..+.  .||...  .++.+....++.+++++..+...+.  .| 
T Consensus       254 ~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~--~P~  326 (398)
T PRK10747        254 NQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ--HGD  326 (398)
T ss_pred             hCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh--CCC
Confidence            76543 2347788999999999999999999999998874  455532  2344445669999999999999875  35 


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          344 SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       344 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      |...+..+...|.+.+++++|.+.|+...+  ..|+...+..+...+.+.|+.++|.+++++=
T Consensus       327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~  387 (398)
T PRK10747        327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDG  387 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            466788899999999999999999999998  4699999999999999999999999999864

>TIGR00540 hemY_coli hemY protein

Probab=99.64  E-value=2.5e-12  Score=120.95  Aligned_cols=286  Identities=10%  Similarity=-0.020  Sum_probs=212.0

Q ss_pred             CCCCCHHHHHHHHHHhc--CCChhh-HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHH
Q 014507          115 PETGNLSDLLAAWVRFM--KPRRAD-WLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAEN  191 (423)
Q Consensus       115 ~~~g~~~~a~~~~~~~~--~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  191 (423)
                      ...|+++.|.+.+.+..  .|+... +-....+..+.|+.+.+...+....+....+....--.....+...|+++.|..
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~  174 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH  174 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence            36899999999998873  455433 334445667789999999999887665433333344445788889999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HHcCChhHHHHHHHHHH
Q 014507          192 TLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYG-SMVMAY---VRAGMLDRGEVLLREMD  267 (423)
Q Consensus       192 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~---~~~~~~~~a~~~~~~m~  267 (423)
                      .++.+.+..+. +...+..+...+.+.|++++|.+++..+.+.++. +...+. .-..++   ...+..+.+.+.+..+.
T Consensus       175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999998644 7778899999999999999999999999998754 433332 222222   33333333444555555


Q ss_pred             hCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507          268 AQEVY---VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARM---CALLINAYQMAGQSQKAYTAFQNMRKAGL  341 (423)
Q Consensus       268 ~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~  341 (423)
                      +....   .+...+..+...+...|+.++|.+++++..+.  .||...   ...........++.+.+.+.++...+.  
T Consensus       253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--  328 (409)
T TIGR00540       253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--  328 (409)
T ss_pred             HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--
Confidence            44321   37789999999999999999999999999986  344432   122222234457888898888887764  


Q ss_pred             CCC-H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          342 EPS-D--KCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       342 ~p~-~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      .|+ +  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~  396 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS  396 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            454 3  5567889999999999999999996555446799999999999999999999999999973

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.61  E-value=1.4e-11  Score=124.94  Aligned_cols=319  Identities=12%  Similarity=0.024  Sum_probs=234.4

Q ss_pred             HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCC-hhhHHHHHHHHHhcCCchHHHHHHHH
Q 014507           87 EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPR-RADWLAVLKQLKLMEHPLYLQVAELA  160 (423)
Q Consensus        87 ~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~  160 (423)
                      ++.+.|..++.+...   .+...+..+...+.+.|++++|++.|++.  ..|+ ...+..+...+...|+.++|...++.
T Consensus        29 g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~  108 (765)
T PRK10049         29 GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQ  108 (765)
T ss_pred             CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            445666677777654   34456888899999999999999999996  4454 46677777888999999999999998


Q ss_pred             HhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH------------
Q 014507          161 LLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETF------------  228 (423)
Q Consensus       161 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~------------  228 (423)
                      .++.. +.+.. +..+..++...|+.++|+..++++.+.... +...+..+..++...+..+.|++.+            
T Consensus       109 ~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~  185 (765)
T PRK10049        109 LVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRD  185 (765)
T ss_pred             HHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHH
Confidence            88773 44556 888899999999999999999999997544 5556666666666666655444433            


Q ss_pred             ----------------------------------HHHHHc-CCCCCHH-HHH----HHHHHHHHcCChhHHHHHHHHHHh
Q 014507          229 ----------------------------------EEIKLL-GEPLDKR-SYG----SMVMAYVRAGMLDRGEVLLREMDA  268 (423)
Q Consensus       229 ----------------------------------~~m~~~-g~~~~~~-~~~----~li~~~~~~~~~~~a~~~~~~m~~  268 (423)
                                                        +.+.+. ...|+.. .+.    ..+.++...|++++|...|+++.+
T Consensus       186 l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~  265 (765)
T PRK10049        186 LEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA  265 (765)
T ss_pred             HHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence                                              344322 1122211 111    113345677899999999999988


Q ss_pred             CCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC----
Q 014507          269 QEVY-VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP---DARMCALLINAYQMAGQSQKAYTAFQNMRKAG----  340 (423)
Q Consensus       269 ~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----  340 (423)
                      .+.. |+. .-..+...|...|++++|+..|+.+.......   .......+..++...|++++|.++++.+.+..    
T Consensus       266 ~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~  344 (765)
T PRK10049        266 EGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFL  344 (765)
T ss_pred             cCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceE
Confidence            7642 332 22235778999999999999999987642111   13456667778899999999999999988642    


Q ss_pred             -------CCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507          341 -------LEPS---DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       341 -------~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  410 (423)
                             -.|+   ...+..+...+...|++++|++.++++... .+.+...+..+...+...|++++|++.+++..+.+
T Consensus       345 ~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~  423 (765)
T PRK10049        345 RLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLE  423 (765)
T ss_pred             eecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence                   1233   234566777888999999999999999876 35568888999999999999999999999877643

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.58  E-value=1.1e-11  Score=123.98  Aligned_cols=354  Identities=12%  Similarity=0.026  Sum_probs=251.7

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccc-hHHHHHHhcCChhhhhhhHH-HHHHH--HhccCCCCCHH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNIT-EEQKQAISQFPRKMTKRCKA-FVKQI--ICVSPETGNLS  121 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~m~~~~~~-~~~~l--l~~~~~~g~~~  121 (423)
                      .+.|++++|+..  |.+..+  ..|+.+...+ .++..+. .++.+.|...+++...++.. .+..+  ...+...|+++
T Consensus        45 ~r~Gd~~~Al~~--L~qaL~--~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd  119 (822)
T PRK14574         45 ARAGDTAPVLDY--LQEESK--AGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWD  119 (822)
T ss_pred             HhCCCHHHHHHH--HHHHHh--hCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHH
Confidence            899999999988  887665  4555321222 4444444 35567788888877654322 33333  45788889999


Q ss_pred             HHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHH
Q 014507          122 DLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKR  198 (423)
Q Consensus       122 ~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  198 (423)
                      +|+++|+++  ..|+. ..+..+...+...++.++|......+...  .|+...+-.++..+...++..+|++.++++.+
T Consensus       120 ~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        120 QALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            999999998  34544 55666777888899999998888877665  45555564444445446666669999999999


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-----------------------------------------------
Q 014507          199 RGFICDQVTLTVMVVMYSKAGNLKMAEETFEEI-----------------------------------------------  231 (423)
Q Consensus       199 ~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-----------------------------------------------  231 (423)
                      .... +...+..+..++.+.|-...|.++..+-                                               
T Consensus       198 ~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~  276 (822)
T PRK14574        198 LAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN  276 (822)
T ss_pred             hCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence            8533 6777777888888777655555444322                                               


Q ss_pred             -HH-cCCCCCH-----HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507          232 -KL-LGEPLDK-----RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA  304 (423)
Q Consensus       232 -~~-~g~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  304 (423)
                       .. .+-.|..     .+..-.+-++...|++.++.+.|+.+...+.+....+-..+.++|...+++++|+.+++.+...
T Consensus       277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~  356 (822)
T PRK14574        277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS  356 (822)
T ss_pred             HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence             21 1111221     1222345566778899999999999998887656678888999999999999999999998653


Q ss_pred             C-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-------------CCCC-HHHHHHHHHHHHHcCCHHHHH
Q 014507          305 G-----ITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG-------------LEPS-DKCVALILSACEKENQLNRAL  365 (423)
Q Consensus       305 g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------~~p~-~~~~~~li~~~~~~g~~~~a~  365 (423)
                      .     ..++......|.-+|...+++++|..+++.+.+..             ..|| ...+..++..+.-.|++.+|+
T Consensus       357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae  436 (822)
T PRK14574        357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ  436 (822)
T ss_pred             cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence            2     12344446788899999999999999999998721             1122 233455666788899999999


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          366 EFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       366 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      +.++++... -+-|......+.+.+...|...+|++.++....
T Consensus       437 ~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~  478 (822)
T PRK14574        437 KKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVES  478 (822)
T ss_pred             HHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence            999999775 355788888999999999999999999976543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.57  E-value=1.8e-11  Score=122.29  Aligned_cols=352  Identities=9%  Similarity=-0.012  Sum_probs=257.2

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeee--ccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCC
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQI--GPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGN  119 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l--~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~  119 (423)
                      ...|+.++|+..  +++.+    .|+. ...+..+  ...+.. ++.+.|..+++++.+   .+...+..++..+.+.++
T Consensus        79 ~~~G~~~~A~~~--~eka~----~p~n-~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q  151 (822)
T PRK14574         79 GWAGRDQEVIDV--YERYQ----SSMN-ISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGR  151 (822)
T ss_pred             HHcCCcHHHHHH--HHHhc----cCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCC
Confidence            677888888877  77655    4432 1222222  224443 566899999999865   345667778889999999


Q ss_pred             HHHHHHHHHHhc--CCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHH-
Q 014507          120 LSDLLAAWVRFM--KPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAM-  196 (423)
Q Consensus       120 ~~~a~~~~~~~~--~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m-  196 (423)
                      .++|++.+++..  .|+...+..+...+...++...|...++.+.+.. +-+...+..+..++.+.|-...|+++..+- 
T Consensus       152 ~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p  230 (822)
T PRK14574        152 GGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP  230 (822)
T ss_pred             HHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence            999999999984  4665555333333333555556888888888875 446666677777777776665555444321 


Q ss_pred             -----------------------------------------------HHc-CCCCCH-HHH----HHHHHHHHHcCCHHH
Q 014507          197 -----------------------------------------------KRR-GFICDQ-VTL----TVMVVMYSKAGNLKM  223 (423)
Q Consensus       197 -----------------------------------------------~~~-g~~p~~-~~~----~~li~~~~~~g~~~~  223 (423)
                                                                     ... +-.|.. ..|    -=.+-++...|+.++
T Consensus       231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~  310 (822)
T PRK14574        231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD  310 (822)
T ss_pred             cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence                                                           111 111221 112    224566778899999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 014507          224 AEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE-----VYVGSEVYKALLRGYSMNGNSEGAQRVF  298 (423)
Q Consensus       224 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~  298 (423)
                      |++.|+.+...|.+....+-..+.++|...+.+++|..+|+.+....     ..++......|.-+|...+++++|..++
T Consensus       311 vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l  390 (822)
T PRK14574        311 LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFA  390 (822)
T ss_pred             HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence            99999999999877677788999999999999999999999997643     2334445688999999999999999999


Q ss_pred             HHHHHCCC-----------CC--CH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507          299 EAIQFAGI-----------TP--DA-RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRA  364 (423)
Q Consensus       299 ~~m~~~g~-----------~p--~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  364 (423)
                      +.+.+...           .|  |- ..+..++..+...|+..+|++.++++.... +-|......+...+...|.+.+|
T Consensus       391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A  469 (822)
T PRK14574        391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKA  469 (822)
T ss_pred             HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence            99987311           12  21 234556788899999999999999998753 44788899999999999999999


Q ss_pred             HHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          365 LEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       365 ~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      +..++..... -+-+..+.......+...|+|++|..+.+.+.
T Consensus       470 ~~~~k~a~~l-~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~  511 (822)
T PRK14574        470 EQELKAVESL-APRSLILERAQAETAMALQEWHQMELLTDDVI  511 (822)
T ss_pred             HHHHHHHhhh-CCccHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            9999777665 34457778889999999999999988886653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.57  E-value=2.1e-14  Score=128.27  Aligned_cols=257  Identities=15%  Similarity=0.044  Sum_probs=89.7

Q ss_pred             HHHHHhcCCchHHHHHHHHHhhcc-cCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507          142 LKQLKLMEHPLYLQVAELALLEES-FEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN  220 (423)
Q Consensus       142 l~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  220 (423)
                      -..+.+.|+++.|..++....... .+.|...|..+...+...++++.|.+.++++...+.. +...+..++.. ...++
T Consensus        15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence            334445555555555553333332 2334445555555666677777777777777666433 45556666665 57777


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 014507          221 LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE-VYVGSEVYKALLRGYSMNGNSEGAQRVFE  299 (423)
Q Consensus       221 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~  299 (423)
                      +++|.+++.+..+.  .++...+..++..+.+.++++++..+++.+.... ...+...|..+...+.+.|+.++|++.++
T Consensus        93 ~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~  170 (280)
T PF13429_consen   93 PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYR  170 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHH
T ss_pred             cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            77777777665543  2455566667777777777777777777765432 23456667777777777777777777777


Q ss_pred             HHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 014507          300 AIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMV  378 (423)
Q Consensus       300 ~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~  378 (423)
                      +..+.  .| |....+.++..+...|+.+++.++++...+.. +.|+..+..+..++...|+.++|..++++..+. -+.
T Consensus       171 ~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~-~p~  246 (280)
T PF13429_consen  171 KALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKL-NPD  246 (280)
T ss_dssp             HHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHH-STT
T ss_pred             HHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccccccccccccc-ccc
Confidence            77665  34 45666677777777777777777777666543 334455667777777777777777777777664 234


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          379 GKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      |+.+...+.+++...|+.++|.++.++.
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~  274 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQA  274 (280)
T ss_dssp             -HHHHHHHHHHHT---------------
T ss_pred             cccccccccccccccccccccccccccc
Confidence            6666777777777777777777776654

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.54  E-value=6.8e-14  Score=125.04  Aligned_cols=258  Identities=17%  Similarity=0.148  Sum_probs=112.5

Q ss_pred             HHHhccCCCCCHHHHHHHHHHh---c-CCChhhHHH-HHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHcc
Q 014507          109 QIICVSPETGNLSDLLAAWVRF---M-KPRRADWLA-VLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKK  183 (423)
Q Consensus       109 ~ll~~~~~~g~~~~a~~~~~~~---~-~p~~~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  183 (423)
                      .+...+.+.|++++|++++.+.   . .|+...|-. +...+...++.+.|...++.+...+.. ++..+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            3456777889999999999654   2 344444444 444555688899999999988877643 66677777777 789


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014507          184 MQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG-EPLDKRSYGSMVMAYVRAGMLDRGEVL  262 (423)
Q Consensus       184 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~  262 (423)
                      +++++|.++++...+..  ++...+..++..+.+.++++++.+++++..... .+.+...|..+...+.+.|+.++|.+.
T Consensus        91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999998876653  466677888899999999999999999987643 356778888899999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507          263 LREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE  342 (423)
Q Consensus       263 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  342 (423)
                      +++..+.... |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++..+.. +
T Consensus       169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p  245 (280)
T PF13429_consen  169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-P  245 (280)
T ss_dssp             HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc-c
Confidence            9999986543 67788899999999999999999888887653 4466678889999999999999999999988743 3


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          343 PSDKCVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       343 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                      .|......+..++...|+.++|.++.++..+
T Consensus       246 ~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  246 DDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             T-HHHHHHHHHHHT-----------------
T ss_pred             ccccccccccccccccccccccccccccccc
Confidence            4788888999999999999999998887654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.54  E-value=8.9e-11  Score=119.83  Aligned_cols=285  Identities=12%  Similarity=0.029  Sum_probs=214.9

Q ss_pred             cCCCCCHHHHHHHHHHhcC--CCh----hhHHHHHHHHHhcCCchHHHH---H----------------------HHHHh
Q 014507          114 SPETGNLSDLLAAWVRFMK--PRR----ADWLAVLKQLKLMEHPLYLQV---A----------------------ELALL  162 (423)
Q Consensus       114 ~~~~g~~~~a~~~~~~~~~--p~~----~~~~~ll~~~~~~~~~~~a~~---~----------------------~~~~~  162 (423)
                      ..+.|+.++|.+++.+...  ++.    .....++..+.+.+......+   +                      .....
T Consensus       386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (987)
T PRK09782        386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV  465 (987)
T ss_pred             HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence            4478899999999988733  222    234466667766655222211   1                      11111


Q ss_pred             hc-cc-CC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 014507          163 EE-SF-EA--NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPL  238 (423)
Q Consensus       163 ~~-~~-~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~  238 (423)
                      .. +. ++  +...|..+..++.. ++.++|...+.+.....  |+......+...+...|++++|...|+++...  +|
T Consensus       466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p  540 (987)
T PRK09782        466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DM  540 (987)
T ss_pred             HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence            11 11 33  67788888888876 88999999888877763  55544444455556899999999999998654  45


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507          239 DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLIN  318 (423)
Q Consensus       239 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~  318 (423)
                      +...+..+..++.+.|++++|...+++..+.+.. +...+..+.....+.|++++|...+++..+.  .|+...|..+..
T Consensus       541 ~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~  617 (987)
T PRK09782        541 SNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARAT  617 (987)
T ss_pred             CcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHH
Confidence            5566777788899999999999999999887532 3344444445556679999999999999875  578889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH
Q 014507          319 AYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVE  397 (423)
Q Consensus       319 ~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~  397 (423)
                      ++.+.|++++|...+++..+.  .|+ ...+..+...+...|++++|...+++..+.. +-+...+..+..++...|+++
T Consensus       618 ~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~  694 (987)
T PRK09782        618 IYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMA  694 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHH
Confidence            999999999999999999885  454 6677888889999999999999999998852 346788899999999999999


Q ss_pred             HHHHHHHHhccc
Q 014507          398 EVEHVLREYGLR  409 (423)
Q Consensus       398 ~A~~~~~~m~~~  409 (423)
                      +|...|++..+.
T Consensus       695 eA~~~l~~Al~l  706 (987)
T PRK09782        695 ATQHYARLVIDD  706 (987)
T ss_pred             HHHHHHHHHHhc
Confidence            999999987544

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.54  E-value=2e-11  Score=114.35  Aligned_cols=279  Identities=10%  Similarity=-0.021  Sum_probs=214.5

Q ss_pred             hHHHHHHhcCChhhhhh--h-HHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChhhHH--HHHHHHHhcCCchHHHHHH
Q 014507           86 EEQKQAISQFPRKMTKR--C-KAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRADWL--AVLKQLKLMEHPLYLQVAE  158 (423)
Q Consensus        86 ~~~~~~a~~~~~~m~~~--~-~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~--~ll~~~~~~~~~~~a~~~~  158 (423)
                      .++++.|++.....++.  + ...|-.......+.|+++.|.+.+.++  ..|+...+.  .....+...|+.+.|....
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l  176 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGV  176 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            45556666666655542  1 223333344557999999999999998  346654443  2345777899999999999


Q ss_pred             HHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          159 LALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ-------VTLTVMVVMYSKAGNLKMAEETFEEI  231 (423)
Q Consensus       159 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m  231 (423)
                      +...+.. +-+......+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++++.+
T Consensus       177 ~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~l  255 (398)
T PRK10747        177 DKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQ  255 (398)
T ss_pred             HHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence            9888776 456788889999999999999999999999998665322       23344454445556667777777776


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 014507          232 KLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDAR  311 (423)
Q Consensus       232 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  311 (423)
                      .+. .+.++.....+..++...|+.++|.+++++..+.  .|+...  .++.+....++.+++.+..+...+.. +-|..
T Consensus       256 p~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~  329 (398)
T PRK10747        256 SRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPL  329 (398)
T ss_pred             CHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhC-CCCHH
Confidence            543 2557888999999999999999999999999884  344422  23444456699999999999998763 33667


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          312 MCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                      .+.++.+.+.+.|++++|.+.|+...+  ..|+..++..+...+.+.|+.++|.+++++-..
T Consensus       330 l~l~lgrl~~~~~~~~~A~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        330 LWSTLGQLLMKHGEWQEASLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            788999999999999999999999997  469999999999999999999999999997654

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.50  E-value=1.8e-10  Score=98.33  Aligned_cols=293  Identities=13%  Similarity=0.125  Sum_probs=221.2

Q ss_pred             CCCHHHHHHHHHHhcCCChhhH---HHHHHHHHhcCCchHHHHHHHHHhhcc-cCCC--HHHHHHHHHHHHccCCHHHHH
Q 014507          117 TGNLSDLLAAWVRFMKPRRADW---LAVLKQLKLMEHPLYLQVAELALLEES-FEAN--IRDYTKIIHGYGKKMQIQNAE  190 (423)
Q Consensus       117 ~g~~~~a~~~~~~~~~p~~~~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~--~~~~~~li~~~~~~~~~~~a~  190 (423)
                      +.+.++|.+.|-+|.+-|..||   -+|.+.+...|..+.|..++..+.++. ..-+  ......+..-|...|-+|.|+
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            4678999999999977666554   457788889999999999998887642 1111  123345667788999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCChhHHHHHHHHH
Q 014507          191 NTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK----RSYGSMVMAYVRAGMLDRGEVLLREM  266 (423)
Q Consensus       191 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m  266 (423)
                      .+|..+.+.|.- -......|+..|-..++|++|++.-+++.+.|-++..    ..|.-|...+....+.+.|...+++.
T Consensus       128 ~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         128 DIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            999999886432 4557788999999999999999999999887644432    23556666667778999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 014507          267 DAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDK  346 (423)
Q Consensus       267 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  346 (423)
                      .+.+.+ .+..--.+-+.+...|++++|.+.++...+.+..--..+...+..+|.+.|+.++...++.++.+....++. 
T Consensus       207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~-  284 (389)
T COG2956         207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADA-  284 (389)
T ss_pred             HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccH-
Confidence            887544 444555667889999999999999999998865445677888999999999999999999999885433443 


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH---cCCHHHHHHHHHHhcccCCcCCC
Q 014507          347 CVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR---LGVVEEVEHVLREYGLRETYSKI  415 (423)
Q Consensus       347 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~~~~~~~  415 (423)
                       -..+...-....-.+.|...+.+-...  .|+...+..+++.-..   .|.+.+-...++.|....+..+.
T Consensus       285 -~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~~~~  353 (389)
T COG2956         285 -ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLRRKP  353 (389)
T ss_pred             -HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHhhcC
Confidence             333433333444456666666555543  5999999999987643   56688888889999877666553

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.49  E-value=1.5e-10  Score=111.12  Aligned_cols=333  Identities=11%  Similarity=0.055  Sum_probs=243.4

Q ss_pred             cchHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--c-CCChhhHHHHHHHHHhcCCchHHHHH
Q 014507           84 ITEEQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--M-KPRRADWLAVLKQLKLMEHPLYLQVA  157 (423)
Q Consensus        84 ~~~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~-~p~~~~~~~ll~~~~~~~~~~~a~~~  157 (423)
                      ++++..+.|..++.+..+   ++...|-.|-..|-+.|+.++++..|--.  . +-|...|..+-.-..+.|.+..|...
T Consensus       150 farg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~c  229 (895)
T KOG2076|consen  150 FARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYC  229 (895)
T ss_pred             HHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence            345666888888887765   45567888888888889998888887665  3 33457788888888888888888888


Q ss_pred             HHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          158 ELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTL----TVMVVMYSKAGNLKMAEETFEEIKL  233 (423)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~li~~~~~~g~~~~A~~~~~~m~~  233 (423)
                      +...++.. +++...+--=...|-+.|+...|.+.|.++.....+.|..-+    -..++.+...++-+.|.+.+.....
T Consensus       230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s  308 (895)
T KOG2076|consen  230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS  308 (895)
T ss_pred             HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            88887776 345555545567788889999998888888887443233222    2345556667777888888877766


Q ss_pred             cC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC---------------------------CCHHHHHHHHHHH
Q 014507          234 LG-EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY---------------------------VGSEVYKALLRGY  285 (423)
Q Consensus       234 ~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------p~~~~~~~li~~~  285 (423)
                      .+ -..+...++.++..+.+...++.|......+......                           ++..+ ..++-++
T Consensus       309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL  387 (895)
T KOG2076|consen  309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICL  387 (895)
T ss_pred             hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhh
Confidence            22 2345567888888888888888888877776652222                           22222 2344455


Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507          286 SMNGNSEGAQRVFEAIQFAGITP--DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNR  363 (423)
Q Consensus       286 ~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  363 (423)
                      .+....+....+........+.|  +...|.-+..+|.+.|++.+|+.+|..+.....--+...|..+.++|...|..++
T Consensus       388 ~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~  467 (895)
T KOG2076|consen  388 VHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEE  467 (895)
T ss_pred             hcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHH
Confidence            66666777777777777766444  5677889999999999999999999999875444457789999999999999999


Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCCcCCCCCccc
Q 014507          364 ALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRETYSKIPGSRS  420 (423)
Q Consensus       364 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~~~~~~~~~~  420 (423)
                      |.+.+++.... -+.+...--.|...+.+.|+.++|.+++..|...+.. +.++++|
T Consensus       468 A~e~y~kvl~~-~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~-~~e~~a~  522 (895)
T KOG2076|consen  468 AIEFYEKVLIL-APDNLDARITLASLYQQLGNHEKALETLEQIINPDGR-NAEACAW  522 (895)
T ss_pred             HHHHHHHHHhc-CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCcc-chhhccc
Confidence            99999999885 2345666678888899999999999999998754433 2344444

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.49  E-value=8.7e-10  Score=96.91  Aligned_cols=282  Identities=12%  Similarity=0.032  Sum_probs=223.7

Q ss_pred             CCCCHHHHHHHHHHhcC-CCh--hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHH
Q 014507          116 ETGNLSDLLAAWVRFMK-PRR--ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENT  192 (423)
Q Consensus       116 ~~g~~~~a~~~~~~~~~-p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  192 (423)
                      ..|+|.+|.+...+-.+ -+.  ..|..-..+.-+.|+.+.+..+.....+..-.++...+-+........|+++.|..-
T Consensus        96 ~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            37999999999987522 222  344444555567889999988888777765567778888888999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCChhHHHHHHHH
Q 014507          193 LLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK-------RSYGSMVMAYVRAGMLDRGEVLLRE  265 (423)
Q Consensus       193 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~  265 (423)
                      ++++.+.+.. +........++|.+.|++.++..++.++.+.|.-.|.       .+|..++.-....+..+.-...++.
T Consensus       176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            9999988665 6788899999999999999999999999999876555       4677777777777777666666766


Q ss_pred             HHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCC
Q 014507          266 MDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK-AGLEPS  344 (423)
Q Consensus       266 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~  344 (423)
                      .... ..-++..-.+++.-+.++|+.++|.++.++..+++..|...    ..-.+.+-++.+.-.+..+.-.+ .+..  
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~~--  327 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPED--  327 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCCC--
Confidence            6543 33356678888999999999999999999999887766622    22234566777776666665544 3333  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          345 DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       345 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      +-.+..|...|.+.+.+.+|...|+...+  ..|+..+|+.+.+++.+.|+.++|.+++++-.
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            46788999999999999999999997776  57999999999999999999999999998765

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.48  E-value=4.2e-10  Score=114.99  Aligned_cols=260  Identities=11%  Similarity=-0.011  Sum_probs=200.3

Q ss_pred             ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507          134 RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVV  213 (423)
Q Consensus       134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  213 (423)
                      +...|..+..++.. ++.++|...+.......  |+......+...+...|++++|...|+++...  +|+...+..+..
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~  550 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAAN  550 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHH
Confidence            44566666666665 78888887666655443  55444444455557899999999999997665  344556677788


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 014507          214 MYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEG  293 (423)
Q Consensus       214 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  293 (423)
                      .+.+.|++++|...|++..+.. +.+...+..+.....+.|++++|...+++..+..  |+...+..+...+.+.|+.++
T Consensus       551 all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~de  627 (987)
T PRK09782        551 TAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPA  627 (987)
T ss_pred             HHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHH
Confidence            8899999999999999998864 3333444444455556799999999999998754  567889999999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          294 AQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLE  372 (423)
Q Consensus       294 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  372 (423)
                      |+..++...... +.+...++.+..++...|++++|.+.+++..+.  .| +...+..+..++...|++++|...+++..
T Consensus       628 A~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al  704 (987)
T PRK09782        628 AVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--LPDDPALIRQLAYVNQRLDDMAATQHYARLVI  704 (987)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999998763 336777888888999999999999999999874  45 47788899999999999999999999998


Q ss_pred             HCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          373 RDGFMVG-KEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       373 ~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      +.  .|+ ..+.-.......+..+++.|.+-+++-
T Consensus       705 ~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~  737 (987)
T PRK09782        705 DD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRR  737 (987)
T ss_pred             hc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence            75  343 455556666677777788888776653

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=2.8e-11  Score=112.57  Aligned_cols=281  Identities=11%  Similarity=-0.019  Sum_probs=207.7

Q ss_pred             CHHHHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhccc--CCCHHHHHHHHHHHHccCCHHHHHHHH
Q 014507          119 NLSDLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESF--EANIRDYTKIIHGYGKKMQIQNAENTL  193 (423)
Q Consensus       119 ~~~~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~  193 (423)
                      +.++|+..|.+.  ..++. .....+.++|-+.++.+.++.+|..+.+...  ..+.+.|.+.+--+-+    +.++..+
T Consensus       334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L  409 (638)
T KOG1126|consen  334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL  409 (638)
T ss_pred             HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence            456677777663  23443 3445566788888888888888887765432  3466777776655433    2222222


Q ss_pred             H-HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 014507          194 L-AMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY  272 (423)
Q Consensus       194 ~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  272 (423)
                      . .+.+. -+-.+.+|.++.+.|+-+++.+.|++.|++..+.. +....+|+.+..-+....++|.|...|+........
T Consensus       410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r  487 (638)
T KOG1126|consen  410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR  487 (638)
T ss_pred             HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch
Confidence            2 22222 12267899999999999999999999999998763 236789999999999999999999999988775333


Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014507          273 VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALIL  352 (423)
Q Consensus       273 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  352 (423)
                       +-.+|.-+...|.+.++++.|+-.|++..+-+ +-+.+....+...+-+.|+.|+|+.++++..... .-|+.+--.-+
T Consensus       488 -hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~  564 (638)
T KOG1126|consen  488 -HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRA  564 (638)
T ss_pred             -hhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHH
Confidence             33355556788999999999999999988753 2367777788888899999999999999988744 22444444556


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          353 SACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       353 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      ..+...+++++|...++++++. ++-+..+|..+.+.|.+.|+.+.|..-|--+.+-
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l  620 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL  620 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence            6777889999999999999885 4445777889999999999999999988877654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.46  E-value=3.5e-10  Score=100.96  Aligned_cols=258  Identities=15%  Similarity=0.118  Sum_probs=194.6

Q ss_pred             HHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHH-------------
Q 014507          144 QLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI--CDQVTL-------------  208 (423)
Q Consensus       144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~-------------  208 (423)
                      ++......+++..-.+.+...|++-+...-+....+.-...++++|+.+|+++.+..+-  -|..+|             
T Consensus       236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL  315 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL  315 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence            44444455556555566667777666665555566666788999999999999886320  033333             


Q ss_pred             ------------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 014507          209 ------------------TVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE  270 (423)
Q Consensus       209 ------------------~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  270 (423)
                                        .++.+.|+-.++.++|..+|+...+.+ +.....|+.+..-|....+...|..-++...+.+
T Consensus       316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~  394 (559)
T KOG1155|consen  316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN  394 (559)
T ss_pred             HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence                              444555666778899999999998875 4466789989999999999999999999999876


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507          271 VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA  349 (423)
Q Consensus       271 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  349 (423)
                      .. |-..|-.|.++|.-.+.+.-|+-.|++....  +| |...|.+|..+|.+.++.++|.+.|......| ..+...+.
T Consensus       395 p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~--kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~  470 (559)
T KOG1155|consen  395 PR-DYRAWYGLGQAYEIMKMHFYALYYFQKALEL--KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALV  470 (559)
T ss_pred             ch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHH
Confidence            54 8889999999999999999999999988874  55 88999999999999999999999999998765 34667888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          350 LILSACEKENQLNRALEFLIDLERD----GFMVG--KEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       350 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      .|...+-+.++.++|...+++.++.    |...+  ...-.-|..-+.+.+++++|.......
T Consensus       471 ~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~  533 (559)
T KOG1155|consen  471 RLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV  533 (559)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            9999999999999999888877652    33222  222233556667788888877755443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.45  E-value=2.1e-10  Score=99.35  Aligned_cols=200  Identities=14%  Similarity=0.120  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      ...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDP-DDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            34444455555555555555555555544321 133444444555555555555555555544432 2233344444444


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507          250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKA  329 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  329 (423)
                      +...|++++|.+.+++..+....                                  ......+..+..++...|++++|
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~----------------------------------~~~~~~~~~l~~~~~~~g~~~~A  154 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLY----------------------------------PQPARSLENAGLCALKAGDFDKA  154 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhcccc----------------------------------ccchHHHHHHHHHHHHcCCHHHH
Confidence            44444455554444444432111                                  11223344445555555555555


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          330 YTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       330 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      .+.+++..+.. +.+...+..+...+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.
T Consensus       155 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  230 (234)
T TIGR02521       155 EKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQ  230 (234)
T ss_pred             HHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            55555554422 112344555555555555555555555555544 22344444455555555566666655555543

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00540 hemY_coli hemY protein

Probab=99.44  E-value=4.1e-10  Score=106.02  Aligned_cols=283  Identities=9%  Similarity=-0.042  Sum_probs=202.4

Q ss_pred             HHHHHHhcCChhhhhh--h-HHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChh--hHHHHHHHHHhcCCchHHHHHHH
Q 014507           87 EQKQAISQFPRKMTKR--C-KAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRA--DWLAVLKQLKLMEHPLYLQVAEL  159 (423)
Q Consensus        87 ~~~~~a~~~~~~m~~~--~-~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~--~~~~ll~~~~~~~~~~~a~~~~~  159 (423)
                      ++++.|.+.+.+..+.  + ...+-.......+.|+.+.|.+.+.+.  ..|+..  ............|+.+.|...++
T Consensus        98 g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~  177 (409)
T TIGR00540        98 GDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHGVD  177 (409)
T ss_pred             CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4556666665555442  2 223334445677889999999999987  346653  23334677788999999999999


Q ss_pred             HHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHH---HHcCCHHHHHHHHHHHHHcC
Q 014507          160 ALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLT-VMVVMY---SKAGNLKMAEETFEEIKLLG  235 (423)
Q Consensus       160 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~---~~~g~~~~A~~~~~~m~~~g  235 (423)
                      .+.+.. +-+......+...+...|++++|.+++..+.+.++. +...+. .-..++   ...+..+++.+.+.++.+..
T Consensus       178 ~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~  255 (409)
T TIGR00540       178 KLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQ  255 (409)
T ss_pred             HHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHC
Confidence            888876 456678889999999999999999999999998765 333332 111221   22333333344555554432


Q ss_pred             C---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CH
Q 014507          236 E---PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVY-KALLRGYSMNGNSEGAQRVFEAIQFAGITP-DA  310 (423)
Q Consensus       236 ~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~  310 (423)
                      .   +.+...+..+...+...|+.++|.+++++..+.........+ ..........++.+.+.+.++...+.  .| |.
T Consensus       256 p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~  333 (409)
T TIGR00540       256 PRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKP  333 (409)
T ss_pred             CHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCCh
Confidence            1   237888999999999999999999999999986543221111 22222334457888999999888765  44 33


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          311 --RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       311 --~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                        ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus       334 ~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       334 KCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence              556688899999999999999999654444679999999999999999999999999997643

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.44  E-value=3.4e-10  Score=98.02  Aligned_cols=200  Identities=16%  Similarity=0.080  Sum_probs=157.1

Q ss_pred             hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          135 RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVM  214 (423)
Q Consensus       135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  214 (423)
                      ...+..+...+...|+.+.+...+....+.. +.+...+..+...+...|++++|.+.+++..+.... +...+..+...
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHH
Confidence            4667888889999999999999998887654 445778888999999999999999999999887543 66788889999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 014507          215 YSKAGNLKMAEETFEEIKLLGE-PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEG  293 (423)
Q Consensus       215 ~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  293 (423)
                      +...|++++|.+.+++...... ......+..+...+...|++++|...+++..+.... +...+..+...+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999987532 223456677778888888888888888888775433 45667777788888888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          294 AQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       294 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      |...+++.... .+.+...+..+...+...|+.++|..+++.+.+
T Consensus       188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            88888877765 234556666677777777888888877776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.43  E-value=3.4e-11  Score=112.00  Aligned_cols=276  Identities=9%  Similarity=0.011  Sum_probs=211.7

Q ss_pred             HHHhcCChhhhh--hhHH-HHHHHHhccCCCCCHHHHHHHHHHh--cC----CChhhHHHHHHHHHhcCCchHHHHHHHH
Q 014507           90 QAISQFPRKMTK--RCKA-FVKQIICVSPETGNLSDLLAAWVRF--MK----PRRADWLAVLKQLKLMEHPLYLQVAELA  160 (423)
Q Consensus        90 ~~a~~~~~~m~~--~~~~-~~~~ll~~~~~~g~~~~a~~~~~~~--~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~  160 (423)
                      ..|...|.+.++  .|+. ....+-.+|-..+++++|.++|+..  ..    -+...|.++|--+-+.-..   -.+-..
T Consensus       336 ~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~L---s~Laq~  412 (638)
T KOG1126|consen  336 REALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVAL---SYLAQD  412 (638)
T ss_pred             HHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHH---HHHHHH
Confidence            556666666554  2332 2344666888999999999999987  23    3557788777543221111   111111


Q ss_pred             HhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 014507          161 LLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK  240 (423)
Q Consensus       161 ~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~  240 (423)
                      +.+. -+-.+.+|.++.++|.-.++.+.|++.|++..+.... ...+|+.+..-+.....+|.|...|+...... +.+-
T Consensus       413 Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-~rhY  489 (638)
T KOG1126|consen  413 LIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-PRHY  489 (638)
T ss_pred             HHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-chhh
Confidence            2222 2456789999999999999999999999999887433 67889989899999999999999999987532 1233


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507          241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAY  320 (423)
Q Consensus       241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  320 (423)
                      .+|.-|...|.+.++++.|+-.|++..+.+.. +.+....+...+.+.|+.|+|++++++..... ..|+.+--..+..+
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld-~kn~l~~~~~~~il  567 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLD-PKNPLCKYHRASIL  567 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcC-CCCchhHHHHHHHH
Confidence            45556778899999999999999999998765 77888889999999999999999999988754 33666656667788


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507          321 QMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDG  375 (423)
Q Consensus       321 ~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  375 (423)
                      ...+++++|+..++++++  +.|+ ...|..+...|.+.|+.+.|..-|.-+.+..
T Consensus       568 ~~~~~~~eal~~LEeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  568 FSLGRYVEALQELEELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HhhcchHHHHHHHHHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            889999999999999998  5676 5667888889999999999999998887753

>PF13041 PPR_2: PPR repeat family

Probab=99.41  E-value=7.7e-13  Score=83.98  Aligned_cols=49  Identities=27%  Similarity=0.494  Sum_probs=27.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507          308 PDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACE  356 (423)
Q Consensus       308 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  356 (423)
                      ||..+||++|++|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555555555555555555555555555555555555555555555554

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.41  E-value=3e-10  Score=101.08  Aligned_cols=209  Identities=14%  Similarity=0.153  Sum_probs=163.6

Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHH
Q 014507          180 YGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRG  259 (423)
Q Consensus       180 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a  259 (423)
                      ....|++++|.+.+.+.....-......|| +.-.+-..|++++|++.|-++-.. +.-+..+...+.+.|....+...|
T Consensus       500 ~f~ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqa  577 (840)
T KOG2003|consen  500 AFANGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQA  577 (840)
T ss_pred             eeecCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHH
Confidence            344688899999999988773332333344 233456789999999999777543 233667777888889889999999


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          260 EVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA  339 (423)
Q Consensus       260 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  339 (423)
                      .+++.+.... ++.|+.+...|...|-+.|+-.+|.+.+-+--.. ++-+..+..-+..-|....-++++..+|++..- 
T Consensus       578 ie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal-  654 (840)
T KOG2003|consen  578 IELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL-  654 (840)
T ss_pred             HHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh-
Confidence            9988776654 4557889999999999999999999887554432 344778888888888888899999999998764 


Q ss_pred             CCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 014507          340 GLEPSDKCVALILSACE-KENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGV  395 (423)
Q Consensus       340 ~~~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~  395 (423)
                       +.|+..-|..++..|. +.|++..|.++++...+. ++-|.....-|++.+...|.
T Consensus       655 -iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  655 -IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             -cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence             7899999999988775 589999999999998775 88899999999998877764

>PF13041 PPR_2: PPR repeat family

Probab=99.40  E-value=1e-12  Score=83.37  Aligned_cols=49  Identities=29%  Similarity=0.401  Sum_probs=22.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507          203 CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV  251 (423)
Q Consensus       203 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  251 (423)
                      ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            3444444444444444444444444444444444444444444444443

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=2e-09  Score=96.19  Aligned_cols=289  Identities=18%  Similarity=0.137  Sum_probs=214.8

Q ss_pred             HHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCH-HHH-HHHHHHHHccCCHH
Q 014507          110 IICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANI-RDY-TKIIHGYGKKMQIQ  187 (423)
Q Consensus       110 ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~-~~li~~~~~~~~~~  187 (423)
                      .-..+.+.|....|.+.|...+..-+..|..-+....-..+.+.+..    +. .+.+.|. ..- -.+..++....+.+
T Consensus       170 ~Gvv~k~~~~~s~A~~sfv~~v~~~P~~W~AWleL~~lit~~e~~~~----l~-~~l~~~~h~M~~~F~~~a~~el~q~~  244 (559)
T KOG1155|consen  170 YGVVLKELGLLSLAIDSFVEVVNRYPWFWSAWLELSELITDIEILSI----LV-VGLPSDMHWMKKFFLKKAYQELHQHE  244 (559)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHhcCCcchHHHHHHHHhhchHHHHHH----HH-hcCcccchHHHHHHHHHHHHHHHHHH
Confidence            33355577888888888887755333444444433322333332221    11 1222221 111 12445666667888


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHH------------------
Q 014507          188 NAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE--PLDKRSYGSMV------------------  247 (423)
Q Consensus       188 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li------------------  247 (423)
                      ++..-.+.....|++-+...-+....+.....++|+|+.+|+++.+...  --|..+|..++                  
T Consensus       245 e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~  324 (559)
T KOG1155|consen  245 EALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN  324 (559)
T ss_pred             HHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH
Confidence            9998888899999886666656666666788999999999999988631  11444555444                  


Q ss_pred             -------------HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507          248 -------------MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA  314 (423)
Q Consensus       248 -------------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  314 (423)
                                   +-|.-.++.++|...|+...+.+.. ....|+.+.+-|....+...|.+-++..++-+ +.|-..|-
T Consensus       325 idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWY  402 (559)
T KOG1155|consen  325 IDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWY  402 (559)
T ss_pred             hccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHh
Confidence                         3345567889999999999987655 56788888899999999999999999998753 45889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 014507          315 LLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRL  393 (423)
Q Consensus       315 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~  393 (423)
                      .+.++|.-.+...-|+-.|++..+  .+| |...|..|...|.+.++.++|++.|......|- .+...+..|.+.|.+.
T Consensus       403 GLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l  479 (559)
T KOG1155|consen  403 GLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEEL  479 (559)
T ss_pred             hhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHH
Confidence            999999999999999999999887  455 688999999999999999999999999988764 4678899999999999


Q ss_pred             CCHHHHHHHHHHhcc
Q 014507          394 GVVEEVEHVLREYGL  408 (423)
Q Consensus       394 g~~~~A~~~~~~m~~  408 (423)
                      ++.++|.+.|++-.+
T Consensus       480 ~d~~eAa~~yek~v~  494 (559)
T KOG1155|consen  480 KDLNEAAQYYEKYVE  494 (559)
T ss_pred             HhHHHHHHHHHHHHH
Confidence            999999999887544

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.37  E-value=1.6e-09  Score=92.65  Aligned_cols=255  Identities=14%  Similarity=0.128  Sum_probs=194.1

Q ss_pred             cCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCC--HHHHHHHHHHHHHcCCHHHH
Q 014507          148 MEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRG-FICD--QVTLTVMVVMYSKAGNLKMA  224 (423)
Q Consensus       148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A  224 (423)
                      ....+.|...|-.|.+.. +-+..+.-++.+.|.+.|..|.|+++.+.+.++. .+-+  ......|..-|...|-+|.|
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRA  126 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRA  126 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHH
Confidence            567788888888887743 3455667788999999999999999999998872 1111  22345577778899999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH----HHHHHHHHHHHhCCCHHHHHHHHHH
Q 014507          225 EETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGS----EVYKALLRGYSMNGNSEGAQRVFEA  300 (423)
Q Consensus       225 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~  300 (423)
                      +.+|..+.+.| ..-......|+..|-...+|++|.++-+++.+.+-.+..    ..|.-|...+....+++.|..++.+
T Consensus       127 E~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~k  205 (389)
T COG2956         127 EDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKK  205 (389)
T ss_pred             HHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence            99999999876 446678889999999999999999999999987766543    4677788888888999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH
Q 014507          301 IQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGK  380 (423)
Q Consensus       301 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~  380 (423)
                      ..+.+ +..+..--.+.+.+...|+++.|.+.|+...+.+..--..+...|..+|...|+.++...++..+.+....+  
T Consensus       206 Alqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--  282 (389)
T COG2956         206 ALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--  282 (389)
T ss_pred             HHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--
Confidence            88753 223334445667889999999999999999988755556788999999999999999999999998863333  


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHH-HHhc
Q 014507          381 EASCTLAAWFKRLGVVEEVEHVL-REYG  407 (423)
Q Consensus       381 ~~~~~l~~~~~~~g~~~~A~~~~-~~m~  407 (423)
                      ..-..+.+.-....-.+.|..++ +.+.
T Consensus       283 ~~~l~l~~lie~~~G~~~Aq~~l~~Ql~  310 (389)
T COG2956         283 DAELMLADLIELQEGIDAAQAYLTRQLR  310 (389)
T ss_pred             cHHHHHHHHHHHhhChHHHHHHHHHHHh
Confidence            33344444333333445555444 4443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.36  E-value=1.1e-09  Score=106.13  Aligned_cols=363  Identities=11%  Similarity=0.055  Sum_probs=236.4

Q ss_pred             ccccchhhhhhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHH-HHHHhcCChhhhh---hhHHHHHHHHh
Q 014507           37 SLHRKPAKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQ-KQAISQFPRKMTK---RCKAFVKQIIC  112 (423)
Q Consensus        37 ~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~-~~~a~~~~~~m~~---~~~~~~~~ll~  112 (423)
                      +.++..-.|-.+|++++|...    .|...+..|+..++.+--+.+.+-+.+ .+.+..-|+..-+   .+..+...+-.
T Consensus       309 s~Y~~gRs~Ha~Gd~ekA~~y----Y~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~  384 (1018)
T KOG2002|consen  309 SFYQLGRSYHAQGDFEKAFKY----YMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGC  384 (1018)
T ss_pred             HHHHHHHHHHhhccHHHHHHH----HHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHh
Confidence            334444444678899999888    677888888762333334556666544 4667666776654   23455556666


Q ss_pred             ccCCCC----CHHHHHHHHHHhcCCC---hhhHHHHHHHHHhcCCchHHHHHHH----HHhhcccCCCHHHHHHHHHHHH
Q 014507          113 VSPETG----NLSDLLAAWVRFMKPR---RADWLAVLKQLKLMEHPLYLQVAEL----ALLEESFEANIRDYTKIIHGYG  181 (423)
Q Consensus       113 ~~~~~g----~~~~a~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~----~~~~~~~~~~~~~~~~li~~~~  181 (423)
                      .|+..+    ..++|..+..+...+.   ..+|..+-..+.. ++......++.    .+...+-.+.+...|.+...+.
T Consensus       385 Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf  463 (1018)
T KOG2002|consen  385 LYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHF  463 (1018)
T ss_pred             HHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHH
Confidence            666554    5677777777775443   3455555444433 33333333333    3445566688888999999999


Q ss_pred             ccCCHHHHHHHHHHHHHc---CCCCCH------H-HHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------------
Q 014507          182 KKMQIQNAENTLLAMKRR---GFICDQ------V-TLTVMVVMYSKAGNLKMAEETFEEIKLLG----------------  235 (423)
Q Consensus       182 ~~~~~~~a~~~~~~m~~~---g~~p~~------~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g----------------  235 (423)
                      ..|++++|...|+.....   ...+|.      . -|| +....-..++++.|.+.|....+..                
T Consensus       464 ~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~  542 (1018)
T KOG2002|consen  464 RLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARD  542 (1018)
T ss_pred             HhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHh
Confidence            999999999999887655   122222      1 222 3333333445555555555554431                


Q ss_pred             -----------------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh----------
Q 014507          236 -----------------EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ-EVYVGSEVYKALLRGYSM----------  287 (423)
Q Consensus       236 -----------------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~----------  287 (423)
                                       ...++..++.+...+.+..++..|.+-|....+. ...+|+++.-.|.+.|.+          
T Consensus       543 k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~e  622 (1018)
T KOG2002|consen  543 KNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPE  622 (1018)
T ss_pred             ccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChH
Confidence                             1223334444444455555555555544443332 122455555555554443          


Q ss_pred             --CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507          288 --NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRAL  365 (423)
Q Consensus       288 --~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  365 (423)
                        .+..++|+++|.+..... +.|...-|-+.-+++..|++++|..+|...++... -+..+|..+.+.|...|++..|+
T Consensus       623 k~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~AI  700 (1018)
T KOG2002|consen  623 KEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRLAI  700 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHHHH
Confidence              235678999999888763 44888888999999999999999999999998653 23457889999999999999999


Q ss_pred             HHHHHHHHC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          366 EFLIDLERD-GFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       366 ~~~~~m~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      ++|+...+. .-.-+..+...|.+++.++|.+.+|.+.+..-.
T Consensus       701 qmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~  743 (1018)
T KOG2002|consen  701 QMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR  743 (1018)
T ss_pred             HHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            999987665 556688999999999999999999999876543

>PRK12370 invasion protein regulator; Provisional

Probab=99.35  E-value=4.3e-09  Score=102.94  Aligned_cols=265  Identities=11%  Similarity=0.062  Sum_probs=180.4

Q ss_pred             ChhhHHHHHHHHHhc-----CCchHHHHHHHHHhhcccCCCHHHHHHHHHHHH---------ccCCHHHHHHHHHHHHHc
Q 014507          134 RRADWLAVLKQLKLM-----EHPLYLQVAELALLEESFEANIRDYTKIIHGYG---------KKMQIQNAENTLLAMKRR  199 (423)
Q Consensus       134 ~~~~~~~ll~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~  199 (423)
                      +...|...+.+....     +..+.|...++..++..+ -+...|..+..++.         ..+++++|...+++..+.
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP-~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l  333 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP-NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL  333 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence            335566666654332     234566777776665432 23455555554433         234588999999999888


Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 014507          200 GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYK  279 (423)
Q Consensus       200 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  279 (423)
                      ... +...+..+...+...|++++|...|++..+.+ +.+...+..+..++...|++++|...+++..+.+.. +...+.
T Consensus       334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~  410 (553)
T PRK12370        334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGI  410 (553)
T ss_pred             CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHH
Confidence            544 77888888888899999999999999998875 445678888899999999999999999999887544 233334


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHH
Q 014507          280 ALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDK-CVALILSACEK  357 (423)
Q Consensus       280 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~  357 (423)
                      .++..+...|++++|...+++..... .| +...+..+..++...|+.++|...++++...  .|+.. ..+.+...+..
T Consensus       411 ~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~  487 (553)
T PRK12370        411 TKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQ  487 (553)
T ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhc
Confidence            44555677899999999999887653 24 4556777888888999999999999887653  44433 34444555666


Q ss_pred             cCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507          358 ENQLNRALEFLIDLERD-GFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       358 ~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  410 (423)
                      .|  +.+...++.+.+. ...+.....  +-..|.-.|+-+.+..+ +++.+.+
T Consensus       488 ~g--~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        488 NS--ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             cH--HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            66  4777777776654 222322222  33334456666666665 7776653

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.33  E-value=1.3e-08  Score=89.70  Aligned_cols=285  Identities=12%  Similarity=-0.022  Sum_probs=219.2

Q ss_pred             hHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHhcCC--Ch--hhHHHHHHHHHhcCCchHHHHHH
Q 014507           86 EEQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRFMKP--RR--ADWLAVLKQLKLMEHPLYLQVAE  158 (423)
Q Consensus        86 ~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~p--~~--~~~~~ll~~~~~~~~~~~a~~~~  158 (423)
                      ++++..|+++..+-.+   ..+..|-.-..+.-+.|+.+.+-+...+.-++  |.  ..+-+........|+.+.|..-.
T Consensus        97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v  176 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV  176 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence            3555666655554333   23344555566777899999999999998433  44  44555556677789999998777


Q ss_pred             HHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          159 LALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ-------VTLTVMVVMYSKAGNLKMAEETFEEI  231 (423)
Q Consensus       159 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m  231 (423)
                      ..+.+.+ +.++.......++|.+.|++..+..++..+.+.|.--+.       .+|+.+++-....+..+.-...|++.
T Consensus       177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~  255 (400)
T COG3071         177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ  255 (400)
T ss_pred             HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence            7777665 467788899999999999999999999999999876554       46777777777777777777777777


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 014507          232 KLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDAR  311 (423)
Q Consensus       232 ~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  311 (423)
                      ... .+.++..-.+++.-+.+.|+.++|.++..+..+.+-.|+    -...-.+.+-++.+.-.+..++-.+.. +-+..
T Consensus       256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h-~~~p~  329 (400)
T COG3071         256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQH-PEDPL  329 (400)
T ss_pred             cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhC-CCChh
Confidence            654 355677777888999999999999999999999887766    223345667788888887777665542 22447


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC
Q 014507          312 MCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVG  379 (423)
Q Consensus       312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~  379 (423)
                      .+.++-..|.+++.|.+|.+.|+...+  ..|+..+|+.+..++.+.|+..+|.++.++....-.+|+
T Consensus       330 L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         330 LLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            888999999999999999999997766  579999999999999999999999999998765433443

>PRK12370 invasion protein regulator; Provisional

Probab=99.31  E-value=4.4e-09  Score=102.87  Aligned_cols=233  Identities=12%  Similarity=0.044  Sum_probs=173.4

Q ss_pred             CCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---------HcCCHHHHHHHHHHHHH
Q 014507          168 ANIRDYTKIIHGYGK-----KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYS---------KAGNLKMAEETFEEIKL  233 (423)
Q Consensus       168 ~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~  233 (423)
                      .+...|...+++-..     .+++++|...|++..+.... +...|..+..++.         ..+++++|...+++..+
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~  332 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE  332 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence            455666666666322     24568999999999887433 4556666655444         23458999999999998


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHH
Q 014507          234 LGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD-ARM  312 (423)
Q Consensus       234 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~  312 (423)
                      .. +-+..++..+...+...|++++|...|++..+.+.. +...+..+...+...|++++|...+++..+.  .|+ ...
T Consensus       333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~  408 (553)
T PRK12370        333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAA  408 (553)
T ss_pred             cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhh
Confidence            75 447788888988999999999999999999987643 5678888999999999999999999999876  443 333


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 014507          313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFK  391 (423)
Q Consensus       313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~  391 (423)
                      +..+...+...|++++|.+.+++..+.. .|+ ...+..+...+...|+.++|...++++... .+.+....+.+...|.
T Consensus       409 ~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~-~~~~~~~~~~l~~~~~  486 (553)
T PRK12370        409 GITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ-EITGLIAVNLLYAEYC  486 (553)
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-cchhHHHHHHHHHHHh
Confidence            3444555777899999999999987653 353 455677788888999999999999987664 2223444556666777


Q ss_pred             HcCCHHHHHHHHHHhccc
Q 014507          392 RLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       392 ~~g~~~~A~~~~~~m~~~  409 (423)
                      ..|  ++|...++++.+.
T Consensus       487 ~~g--~~a~~~l~~ll~~  502 (553)
T PRK12370        487 QNS--ERALPTIREFLES  502 (553)
T ss_pred             ccH--HHHHHHHHHHHHH
Confidence            777  5888877776553

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.30  E-value=4.1e-11  Score=114.52  Aligned_cols=242  Identities=15%  Similarity=0.101  Sum_probs=154.0

Q ss_pred             hcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014507          130 FMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLT  209 (423)
Q Consensus       130 ~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  209 (423)
                      +..|+.+||..++..|+..|+.+.|- ++.-|.-...+.+...|+.++.++..+++.+.+.           .|...||+
T Consensus        20 gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aDtyt   87 (1088)
T KOG4318|consen   20 GILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLADTYT   87 (1088)
T ss_pred             cCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchhHHH
Confidence            37888888888888888888888887 7777777777778888888888888888888777           66788899


Q ss_pred             HHHHHHHHcCCHHH---HHHHHHHHH----HcCCCCCHHHHHHHHHHH--------------HHcCChhHHHHHHHHHHh
Q 014507          210 VMVVMYSKAGNLKM---AEETFEEIK----LLGEPLDKRSYGSMVMAY--------------VRAGMLDRGEVLLREMDA  268 (423)
Q Consensus       210 ~li~~~~~~g~~~~---A~~~~~~m~----~~g~~~~~~~~~~li~~~--------------~~~~~~~~a~~~~~~m~~  268 (423)
                      .|..+|...||+..   +.+.+....    ..|+......+-..+.++              .-.|.++.+.+++..+. 
T Consensus        88 ~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~P-  166 (1088)
T KOG4318|consen   88 NLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKVP-  166 (1088)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhCC-
Confidence            99999999988654   333222222    233322222221221211              12223333333332221 


Q ss_pred             CCCCCCHHHHHH---HHHHHHh-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 014507          269 QEVYVGSEVYKA---LLRGYSM-NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS  344 (423)
Q Consensus       269 ~~~~p~~~~~~~---li~~~~~-~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  344 (423)
                           ...-++.   +++-+.. ...+++-..+-....+   .|++.+|..++.+-.-+|+.+.|..++.+|++.|++.+
T Consensus       167 -----vsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir  238 (1088)
T KOG4318|consen  167 -----VSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR  238 (1088)
T ss_pred             -----cccccchHHHHHHHhccCCchHHHHHHHHHHhhc---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence                 1111111   1222221 1222333333222322   57888888888888888888888888888888888777


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 014507          345 DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGV  395 (423)
Q Consensus       345 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~  395 (423)
                      ..-|..|+-+   .++...++.+++-|.+.|+.|+.+|+...+..+.+.|.
T Consensus       239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            7777777765   67777788888888888888888888776666665443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.28  E-value=2e-08  Score=89.75  Aligned_cols=365  Identities=12%  Similarity=0.096  Sum_probs=195.4

Q ss_pred             cccchhhhhhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhh----hh----hhHHHHH
Q 014507           38 LHRKPAKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKM----TK----RCKAFVK  108 (423)
Q Consensus        38 ~~~~~~~~~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m----~~----~~~~~~~  108 (423)
                      +.+...+|.-..-..+|+..  ++-.++....|+..+.-.| +.+.+-+ .....|.++++..    |.    ..+...+
T Consensus       204 l~nlaqqy~~ndm~~ealnt--yeiivknkmf~nag~lkmn-igni~~kkr~fskaikfyrmaldqvpsink~~rikil~  280 (840)
T KOG2003|consen  204 LFNLAQQYEANDMTAEALNT--YEIIVKNKMFPNAGILKMN-IGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILN  280 (840)
T ss_pred             HHHHHHHhhhhHHHHHHhhh--hhhhhcccccCCCceeeee-ecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHh
Confidence            34444444445566778777  8888888888886433333 4555553 4446677666533    21    1234566


Q ss_pred             HHHhccCCCCCHHHHHHHHHHh--cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccC------------CCHHHHH
Q 014507          109 QIICVSPETGNLSDLLAAWVRF--MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFE------------ANIRDYT  174 (423)
Q Consensus       109 ~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~~~~  174 (423)
                      .+-..+.+.|.++.|+..|+..  ..|+..+--.|+-.+-.-|+.+...+.+..|+.--..            |+....+
T Consensus       281 nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~  360 (840)
T KOG2003|consen  281 NIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLN  360 (840)
T ss_pred             hcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHH
Confidence            6667888999999999999886  4577755444444444566666666666666543221            2222222


Q ss_pred             HHHH-----HHHccC--CHHHHHHHHHHHHHcCCCCCHH-------------HH--------HHHHHHHHHcCCHHHHHH
Q 014507          175 KIIH-----GYGKKM--QIQNAENTLLAMKRRGFICDQV-------------TL--------TVMVVMYSKAGNLKMAEE  226 (423)
Q Consensus       175 ~li~-----~~~~~~--~~~~a~~~~~~m~~~g~~p~~~-------------~~--------~~li~~~~~~g~~~~A~~  226 (423)
                      -.|.     -.-+.+  +.++++-.--++...-+.|+-.             .|        -.-...+.+.|+++.|.+
T Consensus       361 eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aie  440 (840)
T KOG2003|consen  361 EAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIE  440 (840)
T ss_pred             HHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHH
Confidence            2221     111111  1122222222222211222110             01        111234567777777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHH------------------------------------HHHcCChhHHHHHHHHHHhCC
Q 014507          227 TFEEIKLLGEPLDKRSYGSMVMA------------------------------------YVRAGMLDRGEVLLREMDAQE  270 (423)
Q Consensus       227 ~~~~m~~~g~~~~~~~~~~li~~------------------------------------~~~~~~~~~a~~~~~~m~~~~  270 (423)
                      +++-+.+..-+.-...-+.|...                                    ...+|++++|.+.|++....+
T Consensus       441 ilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~nd  520 (840)
T KOG2003|consen  441 ILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNND  520 (840)
T ss_pred             HHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCc
Confidence            77766554322111111111110                                    013577888888888777765


Q ss_pred             CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------------------------------CCCCC-CHHHHHHHH
Q 014507          271 VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF--------------------------------AGITP-DARMCALLI  317 (423)
Q Consensus       271 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------------------------------~g~~p-~~~~~~~li  317 (423)
                      ..-....||. -..+-..|++++|++.|-++..                                ..+.| |....+.+.
T Consensus       521 asc~ealfni-glt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~  599 (840)
T KOG2003|consen  521 ASCTEALFNI-GLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLA  599 (840)
T ss_pred             hHHHHHHHHh-cccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHH
Confidence            4423333332 2344556666766666654431                                11122 444455555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HHcCCH
Q 014507          318 NAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWF-KRLGVV  396 (423)
Q Consensus       318 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~-~~~g~~  396 (423)
                      ..|-+.|+-..|++.+-+--.. ++-|..|..-|..-|....-.++++.+|++..-  +.|+..-|..++..| .+.|++
T Consensus       600 dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgny  676 (840)
T KOG2003|consen  600 DLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNY  676 (840)
T ss_pred             HHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccH
Confidence            5555555555555543322111 222444544444445555556667777776543  789999998777655 568999


Q ss_pred             HHHHHHHHHhccc
Q 014507          397 EEVEHVLREYGLR  409 (423)
Q Consensus       397 ~~A~~~~~~m~~~  409 (423)
                      ++|.++|+.+..+
T Consensus       677 qka~d~yk~~hrk  689 (840)
T KOG2003|consen  677 QKAFDLYKDIHRK  689 (840)
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999988754

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.27  E-value=7e-09  Score=99.94  Aligned_cols=355  Identities=14%  Similarity=0.094  Sum_probs=260.6

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchH-HHHHHhcCChhh---hhhhHHHHHHHHhccCCCCCHH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEE-QKQAISQFPRKM---TKRCKAFVKQIICVSPETGNLS  121 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~-~~~~a~~~~~~m---~~~~~~~~~~ll~~~~~~g~~~  121 (423)
                      --+|++++|..+  +.|.+++.  |. ....|-.+...|-.. +-+.+...+-..   ...|...|-.+-....+.|+++
T Consensus       150 farg~~eeA~~i--~~EvIkqd--p~-~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~  224 (895)
T KOG2076|consen  150 FARGDLEEAEEI--LMEVIKQD--PR-NPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNIN  224 (895)
T ss_pred             HHhCCHHHHHHH--HHHHHHhC--cc-chhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHH
Confidence            345999999988  88887753  32 235677787777743 335554433322   2357789999999999999999


Q ss_pred             HHHHHHHHhcCCChhhHH---HHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHH----HHHHHHHccCCHHHHHHHHH
Q 014507          122 DLLAAWVRFMKPRRADWL---AVLKQLKLMEHPLYLQVAELALLEESFEANIRDYT----KIIHGYGKKMQIQNAENTLL  194 (423)
Q Consensus       122 ~a~~~~~~~~~p~~~~~~---~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~li~~~~~~~~~~~a~~~~~  194 (423)
                      +|.-.|.+.++-++.-|-   .=...|-+.|+...|..-+..+.....+.|..-+.    .+++.+...++-+.|.+.++
T Consensus       225 qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le  304 (895)
T KOG2076|consen  225 QARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE  304 (895)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999998543332233   33456778999999999999888876544443333    34566777788899999988


Q ss_pred             HHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---------------------------CCCCCHHHHHHH
Q 014507          195 AMKRR-GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL---------------------------GEPLDKRSYGSM  246 (423)
Q Consensus       195 ~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------g~~~~~~~~~~l  246 (423)
                      ..... +-..+...++.++..+.+...++.|......+...                           ++.++..++ -+
T Consensus       305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl  383 (895)
T KOG2076|consen  305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RL  383 (895)
T ss_pred             HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hH
Confidence            87763 22335667889999999999999999998888762                           122333331 23


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 014507          247 VMAYVRAGMLDRGEVLLREMDAQEVY--VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAG  324 (423)
Q Consensus       247 i~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  324 (423)
                      +-++.+.+..+....+..-+.+..+.  -+...|.-+..+|...|++.+|..+|..+...-..-+...|-.+.++|...|
T Consensus       384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~  463 (895)
T KOG2076|consen  384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG  463 (895)
T ss_pred             hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence            33445555556666666666666643  3567899999999999999999999999998654557789999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH--------HCCCCcCHHHHHHHHHHHHHcCC
Q 014507          325 QSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLE--------RDGFMVGKEASCTLAAWFKRLGV  395 (423)
Q Consensus       325 ~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~--------~~g~~~~~~~~~~l~~~~~~~g~  395 (423)
                      .+++|.+.|+.....  .|+ ...-..|-..+.+.|+.++|.+.+..+.        ..+..|+..........|.+.|+
T Consensus       464 e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk  541 (895)
T KOG2076|consen  464 EYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGK  541 (895)
T ss_pred             hHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhh
Confidence            999999999999873  454 3445566677889999999999999853        33567788888888899999999


Q ss_pred             HHHHHHHHHHhcc
Q 014507          396 VEEVEHVLREYGL  408 (423)
Q Consensus       396 ~~~A~~~~~~m~~  408 (423)
                      .++=..+-.+|..
T Consensus       542 ~E~fi~t~~~Lv~  554 (895)
T KOG2076|consen  542 REEFINTASTLVD  554 (895)
T ss_pred             HHHHHHHHHHHHH
Confidence            9886666555544

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.24  E-value=5e-10  Score=107.27  Aligned_cols=248  Identities=14%  Similarity=0.115  Sum_probs=167.2

Q ss_pred             hcccccccccCCCcceeeeeeccccchHHH-HHHhcCChhhhhh----hHHHHHHHHhccCCCCCHHHHHHHHHHhcCCC
Q 014507           60 AEDMGKTQVKDDTSMFTWIQIGPNITEEQK-QAISQFPRKMTKR----CKAFVKQIICVSPETGNLSDLLAAWVRFMKPR  134 (423)
Q Consensus        60 ~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~-~~a~~~~~~m~~~----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~p~  134 (423)
                      +-.+...|+.|+-  .||..++.-|+..++ +.|. +|..|.-+    +...++.++.+..+.++.+.+.       .|.
T Consensus        13 la~~e~~gi~PnR--vtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~   82 (1088)
T KOG4318|consen   13 LALHEISGILPNR--VTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL   82 (1088)
T ss_pred             HHHHHHhcCCCch--hhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence            5578899999976  999999999996555 6666 88888653    4467889999999888888776       788


Q ss_pred             hhhHHHHHHHHHhcCCchHHHHHHHHHhh-------cccC-CCHHH-------------HHHHHHHHHccCCHHHHHHHH
Q 014507          135 RADWLAVLKQLKLMEHPLYLQVAELALLE-------ESFE-ANIRD-------------YTKIIHGYGKKMQIQNAENTL  193 (423)
Q Consensus       135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-------~~~~-~~~~~-------------~~~li~~~~~~~~~~~a~~~~  193 (423)
                      ..+|..|+.+|++.|+......+...+..       .|+- |....             -..++.-....|.++.+++++
T Consensus        83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll  162 (1088)
T KOG4318|consen   83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL  162 (1088)
T ss_pred             hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999997665444443322       1211 00000             111222333344445555554


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 014507          194 LAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV  273 (423)
Q Consensus       194 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  273 (423)
                      ..+...... .  +...+++-+....  .-..++....+...-.|+..+|+.++.+-..+|+.+.|..++.+|++.|.+.
T Consensus       163 ~~~Pvsa~~-~--p~~vfLrqnv~~n--tpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpi  237 (1088)
T KOG4318|consen  163 AKVPVSAWN-A--PFQVFLRQNVVDN--TPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPI  237 (1088)
T ss_pred             hhCCccccc-c--hHHHHHHHhccCC--chHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCc
Confidence            444332111 0  1111233332222  2233333332221115899999999999999999999999999999999988


Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507          274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ  325 (423)
Q Consensus       274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  325 (423)
                      +..-|..|+-+   .++...++.+++.|...|+.|+..|+...+..+..+|.
T Consensus       238 r~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  238 RAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             ccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            88877777766   78888899999999999999999998888877777555

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.23  E-value=3e-08  Score=94.23  Aligned_cols=287  Identities=11%  Similarity=0.028  Sum_probs=205.4

Q ss_pred             ccCCCCCHHHHHHHHHHh--cCCChhhH-HHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHcc-----C
Q 014507          113 VSPETGNLSDLLAAWVRF--MKPRRADW-LAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKK-----M  184 (423)
Q Consensus       113 ~~~~~g~~~~a~~~~~~~--~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-----~  184 (423)
                      .+...|++++|++.++..  .-+|..++ ......+.+.|+.++|..++..+++.++ .|..-|..+..+..-.     .
T Consensus        13 il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g~~~~~~~~   91 (517)
T PF12569_consen   13 ILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALGLQLQLSDE   91 (517)
T ss_pred             HHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHhhhcccccc
Confidence            346779999999999875  44666544 4566677889999999999999999873 4555566666666332     3


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 014507          185 QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNL-KMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLL  263 (423)
Q Consensus       185 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~  263 (423)
                      +.+...++++++...-  |.......+.-.+..-..+ ..+..++..+...|+++   +|+.|-..|....+.+-..+++
T Consensus        92 ~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~  166 (517)
T PF12569_consen   92 DVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV  166 (517)
T ss_pred             cHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence            5778889999887763  3333333232222222223 34666777788888654   5666666666555555556666


Q ss_pred             HHHHhC----C----------CCCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCH
Q 014507          264 REMDAQ----E----------VYVGS--EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD-ARMCALLINAYQMAGQS  326 (423)
Q Consensus       264 ~~m~~~----~----------~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~  326 (423)
                      ......    +          -.|+.  .++..+.+.|-..|++++|++++++..+.  .|+ +..|..-.+.+-+.|++
T Consensus       167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G~~  244 (517)
T PF12569_consen  167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAGDL  244 (517)
T ss_pred             HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCCCH
Confidence            655432    1          12344  35566788899999999999999999886  565 67788889999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH--------HHHHHHHHHHcCCHHH
Q 014507          327 QKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEA--------SCTLAAWFKRLGVVEE  398 (423)
Q Consensus       327 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~--------~~~l~~~~~~~g~~~~  398 (423)
                      .+|.+.++..++.. .-|...=+-.+..+.+.|++++|.+++....+.+..|....        ......+|.+.|++..
T Consensus       245 ~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~  323 (517)
T PF12569_consen  245 KEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL  323 (517)
T ss_pred             HHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            99999999999865 34676777778888899999999999999988775553322        2466788999999999


Q ss_pred             HHHHHHHhcc
Q 014507          399 VEHVLREYGL  408 (423)
Q Consensus       399 A~~~~~~m~~  408 (423)
                      |++-|..+.+
T Consensus       324 ALk~~~~v~k  333 (517)
T PF12569_consen  324 ALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHH
Confidence            8887765543

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.23  E-value=2.1e-09  Score=91.94  Aligned_cols=231  Identities=15%  Similarity=0.033  Sum_probs=189.8

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507          173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR  252 (423)
Q Consensus       173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  252 (423)
                      -+-+..+|.+.|.+.+|++.|+.-.+.  .|-+.||-.|-..|.+..+++.|+.++.+-.+. .+.|+....-+...+-.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence            366888999999999999999988776  456678888999999999999999999988875 23344444556777888


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507          253 AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTA  332 (423)
Q Consensus       253 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~  332 (423)
                      .++.++|.++|+...+.... +.....++...|.-.+++|-|++.++.+...|+ -+...|+.+.-+|.-.+++|-++..
T Consensus       303 m~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~-~speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGA-QSPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcC-CChHHHhhHHHHHHhhcchhhhHHH
Confidence            89999999999999886543 667777888888899999999999999999885 4788899999999999999999999


Q ss_pred             HHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          333 FQNMRKAGLEPS--DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       333 ~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      |++....--.|+  ...|..+-......|++..|.+.|+-..... ..+...++.|.-.-.+.|++++|..+++.-++.
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            998877544455  3467777777888999999999999877653 346788888888889999999999999876543

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.18  E-value=3.1e-08  Score=93.13  Aligned_cols=242  Identities=15%  Similarity=0.150  Sum_probs=179.5

Q ss_pred             cCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-----CC-CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q 014507          166 FEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR-----GF-ICDQVT-LTVMVVMYSKAGNLKMAEETFEEIKL-----  233 (423)
Q Consensus       166 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~-~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~-----  233 (423)
                      .+.-..+...+...|...|+++.|+.+++...+.     |. .|...+ .+.+...|...+++++|..+|+++..     
T Consensus       195 ~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~  274 (508)
T KOG1840|consen  195 DPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEV  274 (508)
T ss_pred             CchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence            3334466677999999999999999999987654     31 223333 34477788999999999999999875     


Q ss_pred             cC-CCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhC-----CCC-CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507          234 LG-EPLD-KRSYGSMVMAYVRAGMLDRGEVLLREMDAQ-----EVY-VG-SEVYKALLRGYSMNGNSEGAQRVFEAIQFA  304 (423)
Q Consensus       234 ~g-~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~-p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  304 (423)
                      .| ..|. ..+++.|..+|.+.|++++|...++...+.     |.. |. ...++.+...|+..+++++|..+++...+.
T Consensus       275 ~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i  354 (508)
T KOG1840|consen  275 FGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKI  354 (508)
T ss_pred             cCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence            23 1222 346888888999999999998888776531     221 22 235677788899999999999999865541


Q ss_pred             ---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          305 ---GITP----DARMCALLINAYQMAGQSQKAYTAFQNMRKA------GLEP-SDKCVALILSACEKENQLNRALEFLID  370 (423)
Q Consensus       305 ---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~  370 (423)
                         -+.+    -..+++.|...|...|++++|.+++++....      +..+ ....++.+...|.+.+.+.+|.++|.+
T Consensus       355 ~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~  434 (508)
T KOG1840|consen  355 YLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEE  434 (508)
T ss_pred             HHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHH
Confidence               1122    2457999999999999999999999988641      1122 245788899999999999999888886


Q ss_pred             HHH----CC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          371 LER----DG--FMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       371 m~~----~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      ...    .|  .+-...+|..|...|.+.|++++|.++.+...
T Consensus       435 ~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  435 AKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            542    22  22235779999999999999999999988764

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=4.1e-08  Score=88.60  Aligned_cols=223  Identities=12%  Similarity=0.022  Sum_probs=174.2

Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 014507          178 HGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD  257 (423)
Q Consensus       178 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~  257 (423)
                      ..+.-.|+.-.|..-|+...+....++. .|--+..+|....+.++....|++..+.+ +-++.+|..-...+.-.++++
T Consensus       334 tF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e  411 (606)
T KOG0547|consen  334 TFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYE  411 (606)
T ss_pred             hhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHH
Confidence            3455678888899999988887555333 37777888999999999999999998876 446777887788888888999


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          258 RGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMR  337 (423)
Q Consensus       258 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  337 (423)
                      +|..=|++.+..... +...|-.+.-+..+.+++++++..|++..++ ++-.+..|+....++...++++.|.+.|+..+
T Consensus       412 ~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai  489 (606)
T KOG0547|consen  412 EAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAI  489 (606)
T ss_pred             HHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHH
Confidence            999999999887654 6777888888888999999999999999876 45578899999999999999999999999887


Q ss_pred             HC-----CCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          338 KA-----GLEPSDKCVAL-ILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLRE  405 (423)
Q Consensus       338 ~~-----~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  405 (423)
                      +.     ++..+..++.. -+-.+.-.+++..|..++++..+.. +-....|..|...-.+.|+.++|+++|++
T Consensus       490 ~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEk  562 (606)
T KOG0547|consen  490 ELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEK  562 (606)
T ss_pred             hhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            62     22222222211 1111112488999999999988752 23466799999999999999999999986

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.15  E-value=1.1e-07  Score=92.72  Aligned_cols=201  Identities=12%  Similarity=0.061  Sum_probs=84.0

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI--CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM  246 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  246 (423)
                      |+...+.|.+.|.-.|+++.++.+...+......  .-...|-.+.++|-..|++++|..+|.+..+..-.--+-.+--|
T Consensus       269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~Gl  348 (1018)
T KOG2002|consen  269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGL  348 (1018)
T ss_pred             CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccch
Confidence            4444555555555555555555555555443110  01223444555555555555555555544443211011223334


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 014507          247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG----NSEGAQRVFEAIQFAGITPDARMCALLINAYQM  322 (423)
Q Consensus       247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  322 (423)
                      ...|.+.|+.+.+...|+...+.... +..+...|...|...+    ..+.|..++.+..+.- .-|...|-.+...+-.
T Consensus       349 gQm~i~~~dle~s~~~fEkv~k~~p~-~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~  426 (1018)
T KOG2002|consen  349 GQMYIKRGDLEESKFCFEKVLKQLPN-NYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ  426 (1018)
T ss_pred             hHHHHHhchHHHHHHHHHHHHHhCcc-hHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence            44555555555555555555543221 3334444444444332    2333444444333321 1234444333333332


Q ss_pred             cCCHHHHHHHHHHHH----HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          323 AGQSQKAYTAFQNMR----KAGLEPSDKCVALILSACEKENQLNRALEFLIDLE  372 (423)
Q Consensus       323 ~g~~~~a~~~~~~m~----~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  372 (423)
                      .. ...++.+|....    ..+-.+.+...|.+.......|+++.|...|....
T Consensus       427 ~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~  479 (1018)
T KOG2002|consen  427 TD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSAL  479 (1018)
T ss_pred             cC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHh
Confidence            22 222233333222    22222334444444444444455554444444443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.14  E-value=7.1e-09  Score=88.84  Aligned_cols=231  Identities=10%  Similarity=0.006  Sum_probs=194.6

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507          138 WLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK  217 (423)
Q Consensus       138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  217 (423)
                      -+.+.+.|.+.|.+.+|+..+..-+..  .|-+.||-.+-.+|.+..+.+.|+.++.+-.+. ++-|+....-+.+.+-.
T Consensus       226 k~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~ea  302 (478)
T KOG1129|consen  226 KQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEA  302 (478)
T ss_pred             HHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHH
Confidence            356778889999999998888776665  466778888999999999999999999998876 34355555667788888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 014507          218 AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRV  297 (423)
Q Consensus       218 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  297 (423)
                      .++.++|.++|+...+.. +.++....++...|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.++++-++.-
T Consensus       303 m~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~s  380 (478)
T KOG1129|consen  303 MEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPS  380 (478)
T ss_pred             HHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHH
Confidence            999999999999998865 457778888888899999999999999999999998 889999999999999999999999


Q ss_pred             HHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          298 FEAIQFAGITPD--ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       298 ~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      |+.....--.|+  ...|..+-......|++..|.+.|+-....+ .-+...++.|.-.-.+.|++++|..+++.....
T Consensus       381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            998876543443  4568888888889999999999999887654 334778999988889999999999999987763

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.14  E-value=9.9e-07  Score=82.65  Aligned_cols=272  Identities=13%  Similarity=0.083  Sum_probs=175.1

Q ss_pred             HHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--------cCCChhhHHHHHHHHHhcCCchHHHHHH
Q 014507           90 QAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--------MKPRRADWLAVLKQLKLMEHPLYLQVAE  158 (423)
Q Consensus        90 ~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--------~~p~~~~~~~ll~~~~~~~~~~~a~~~~  158 (423)
                      +-|.+++.+..+   .+...|-+-...=-.+|+.+.+.++.+++        +..+...|..=..+|-..|..-.++.+.
T Consensus       423 enAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi  502 (913)
T KOG0495|consen  423 ENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAII  502 (913)
T ss_pred             HHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHH
Confidence            444555554443   35566666555556788999988888875        4567777877778888888888888888


Q ss_pred             HHHhhcccCC--CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 014507          159 LALLEESFEA--NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE  236 (423)
Q Consensus       159 ~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  236 (423)
                      ...+.-|++-  -..+|..-...|.+.+.++-|..+|....+- ++-+...|......=-..|..++...+|++....- 
T Consensus       503 ~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~-  580 (913)
T KOG0495|consen  503 RAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC-  580 (913)
T ss_pred             HHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-
Confidence            8877777643  3467888888888888888888888877765 33355666666655556677777777777776652 


Q ss_pred             CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014507          237 PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALL  316 (423)
Q Consensus       237 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  316 (423)
                      +-....|-.....+-..||...|..++.+..+.... +...|-.-+.....+.+++.|..+|.+....  .|+...|.--
T Consensus       581 pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs  657 (913)
T KOG0495|consen  581 PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKS  657 (913)
T ss_pred             CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHH
Confidence            334445555555666667777777777777665443 5666666677777777777777777666653  4566666555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          317 INAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFL  368 (423)
Q Consensus       317 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~  368 (423)
                      +....-.|..++|.+++++..+  ..|+ ...|..+...+-+.++++.|.+.|
T Consensus       658 ~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY  708 (913)
T KOG0495|consen  658 ANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAY  708 (913)
T ss_pred             hHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            5555556666666666666554  2333 223333333444444444444444

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.11  E-value=8.2e-08  Score=90.32  Aligned_cols=237  Identities=14%  Similarity=0.066  Sum_probs=177.9

Q ss_pred             hhHHHHHHHHHhcCCchHHHHHHHHHhhc-----cc-CCCHH-HHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCC-
Q 014507          136 ADWLAVLKQLKLMEHPLYLQVAELALLEE-----SF-EANIR-DYTKIIHGYGKKMQIQNAENTLLAMKRR-----GFI-  202 (423)
Q Consensus       136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~-~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g~~-  202 (423)
                      .+...+...|...|+++.|..+++..++.     |. .|... ..+.+...|...+++++|..+|+++...     |-. 
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            55666888999999999998888776654     21 23332 2344677889999999999999998652     221 


Q ss_pred             C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCC-CCCH-HHHHHHHHHHHHcCChhHHHHHHHHHHhC---CC
Q 014507          203 C-DQVTLTVMVVMYSKAGNLKMAEETFEEIKL-----LGE-PLDK-RSYGSMVMAYVRAGMLDRGEVLLREMDAQ---EV  271 (423)
Q Consensus       203 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~  271 (423)
                      | -..+++.|..+|.+.|++++|..+++...+     .|. .|.+ ..++.+...|...+++++|..+++...+.   -+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            1 235678888899999999998888877654     222 2232 24777888899999999999999876542   12


Q ss_pred             CC----CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Q 014507          272 YV----GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA----GI--TP-DARMCALLINAYQMAGQSQKAYTAFQNMRK--  338 (423)
Q Consensus       272 ~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--  338 (423)
                      .+    -..+++.|...|.+.|++++|++++++....    +.  .+ ....++.+...|.+.+++++|.++|.+-..  
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            22    2468999999999999999999999987642    11  22 356788899999999999999999987543  


Q ss_pred             --CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          339 --AGL-EPS-DKCVALILSACEKENQLNRALEFLIDLE  372 (423)
Q Consensus       339 --~~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  372 (423)
                        .|. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence              332 344 5789999999999999999999988775

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.07  E-value=3.1e-07  Score=82.47  Aligned_cols=198  Identities=11%  Similarity=-0.028  Sum_probs=138.6

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      ...|......+...|+.++|...|++..+.... +...|+.+...+...|++++|...|++..+.. +-+..+|..+..+
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~  141 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIA  141 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            355777778888899999999999998887543 67889999999999999999999999988754 3346778888888


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507          250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKA  329 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  329 (423)
                      +...|++++|.+.|+...+.... +. ........+...++.++|.+.+++..... .|+...+ .  ......|+..++
T Consensus       142 l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~  215 (296)
T PRK11189        142 LYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE  215 (296)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH
Confidence            88899999999999998876433 22 22222233445678999999997655332 2332222 2  233345665544


Q ss_pred             HHHHHHHHHC---C--CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507          330 YTAFQNMRKA---G--LEP-SDKCVALILSACEKENQLNRALEFLIDLERDGF  376 (423)
Q Consensus       330 ~~~~~~m~~~---~--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  376 (423)
                       +.+..+.+.   .  +.| ....|..+...+...|++++|...|++..+...
T Consensus       216 -~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~  267 (296)
T PRK11189        216 -TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV  267 (296)
T ss_pred             -HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence             344554431   1  112 235788888899999999999999999887653

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.06  E-value=2.4e-07  Score=83.20  Aligned_cols=220  Identities=14%  Similarity=0.040  Sum_probs=159.6

Q ss_pred             ccCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 014507          182 KKMQIQNAENTLLAMKRRG-FIC--DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDR  258 (423)
Q Consensus       182 ~~~~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~  258 (423)
                      ..+..+.++.-+.++.... ..|  ....|..+...|...|+.++|...|++..+.. +.+...|+.+...+...|++++
T Consensus        38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~  116 (296)
T PRK11189         38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDA  116 (296)
T ss_pred             CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHH
Confidence            3456777888888877542 222  24567888888999999999999999999875 4468899999999999999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          259 GEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       259 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      |...|++..+.... +..++..+..++...|++++|.+.|+...+.  .|+..........+...++.++|.+.+.+...
T Consensus       117 A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~  193 (296)
T PRK11189        117 AYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRYE  193 (296)
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            99999999986544 5678888999999999999999999998875  45432222222234557889999999977654


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CC----Cc-CHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507          339 AGLEPSDKCVALILSACEKENQLNRALEFLIDLERD-GF----MV-GKEASCTLAAWFKRLGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       339 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  410 (423)
                      .. .|+...+ .  ......|+...+ +.++.+.+. ..    .| ....|..+...+.+.|++++|...|++..+.+
T Consensus       194 ~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        194 KL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             hC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            32 3332221 2  223345666554 355555432 11    11 34678899999999999999999999877654

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.06  E-value=6.1e-07  Score=82.67  Aligned_cols=279  Identities=11%  Similarity=-0.038  Sum_probs=215.1

Q ss_pred             HHHHHhccCCCCCHHHHHHHHHHhcC---CChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHcc
Q 014507          107 VKQIICVSPETGNLSDLLAAWVRFMK---PRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKK  183 (423)
Q Consensus       107 ~~~ll~~~~~~g~~~~a~~~~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  183 (423)
                      ...-.+-+-..+++.+..++++....   +....+..=|..+...|+...-..+-..+.+. .+-.+.+|-++...|.-.
T Consensus       247 l~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i  325 (611)
T KOG1173|consen  247 LAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMI  325 (611)
T ss_pred             HHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHh
Confidence            33344455677899999999988743   44456666677888888888777766667665 456778899999999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHH
Q 014507          184 MQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLL  263 (423)
Q Consensus       184 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~  263 (423)
                      |..++|.+.|.+....... =...|-.+...|+-.|..|.|+..|...-+.= +-..-.+--+.--|.+.+..+.|.++|
T Consensus       326 ~k~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~-~G~hlP~LYlgmey~~t~n~kLAe~Ff  403 (611)
T KOG1173|consen  326 GKYSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLM-PGCHLPSLYLGMEYMRTNNLKLAEKFF  403 (611)
T ss_pred             cCcHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhc-cCCcchHHHHHHHHHHhccHHHHHHHH
Confidence            9999999999988766322 23578889999999999999999998877631 112222333555688899999999999


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC---C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          264 REMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA--GI---T-PDARMCALLINAYQMAGQSQKAYTAFQNMR  337 (423)
Q Consensus       264 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~---~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  337 (423)
                      .+....... |+...+-+.-.....+.+.+|..+|+.....  .+   . ....+++.+..+|.+.+.+++|...++...
T Consensus       404 ~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL  482 (611)
T KOG1173|consen  404 KQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKAL  482 (611)
T ss_pred             HHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            998886443 7788888888888889999999999887621  11   1 245678899999999999999999999988


Q ss_pred             HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH
Q 014507          338 KAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR  392 (423)
Q Consensus       338 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~  392 (423)
                      ... +-|..++.++.-.+...|+++.|.+.|.+...  +.|+..+-..++..+..
T Consensus       483 ~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~aie  534 (611)
T KOG1173|consen  483 LLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAIE  534 (611)
T ss_pred             HcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHHH
Confidence            743 44788999999999999999999999998775  67887777777765543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.05  E-value=5.4e-07  Score=85.82  Aligned_cols=259  Identities=12%  Similarity=0.056  Sum_probs=187.1

Q ss_pred             HHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----
Q 014507          143 KQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKA----  218 (423)
Q Consensus       143 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----  218 (423)
                      ..+...|+.+.|...+..-.. .+.............+.+.|+.++|..++..+.++++. |..-|..+..+..-.    
T Consensus        12 ~il~e~g~~~~AL~~L~~~~~-~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   12 SILEEAGDYEEALEHLEKNEK-QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHHCCCHHHHHHHHHhhhh-hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence            455778999999888764322 23334455667788899999999999999999998542 444444555554222    


Q ss_pred             -CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 014507          219 -GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD-RGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQR  296 (423)
Q Consensus       219 -g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  296 (423)
                       .+.+....+|+++...-  |.......+.-.+.....+. .+...+..+...|+++   +|+.+-..|......+-..+
T Consensus        90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~  164 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIES  164 (517)
T ss_pred             cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHH
Confidence             25778888999887652  44444433333333222332 3556677778888864   77777777776666666667


Q ss_pred             HHHHHHHC----C----------CCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcC
Q 014507          297 VFEAIQFA----G----------ITPDAR--MCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKEN  359 (423)
Q Consensus       297 ~~~~m~~~----g----------~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g  359 (423)
                      ++......    +          -.|+..  ++..+...|-..|++++|++++++.++.  .|+ +..|..-.+.+-+.|
T Consensus       165 l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~KarilKh~G  242 (517)
T PF12569_consen  165 LVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARILKHAG  242 (517)
T ss_pred             HHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHCC
Confidence            77665432    1          134443  4466678889999999999999999885  566 678888889999999


Q ss_pred             CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507          360 QLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRET  411 (423)
Q Consensus       360 ~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  411 (423)
                      ++.+|.+.++...... .-|...-+..+..+.++|++++|.+++......+.
T Consensus       243 ~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  243 DLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV  293 (517)
T ss_pred             CHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence            9999999999998864 35778888888999999999999999999987775

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.05  E-value=1.5e-06  Score=78.56  Aligned_cols=155  Identities=9%  Similarity=0.005  Sum_probs=105.3

Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507          253 AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGY----SMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK  328 (423)
Q Consensus       253 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  328 (423)
                      ..|++.+.++|+...+. ++....||.-+--+|    .++.++..|.+++....  |.-|-..+|...|..-.+.++++.
T Consensus       379 ~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDR  455 (677)
T KOG1915|consen  379 AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDR  455 (677)
T ss_pred             hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHH
Confidence            34555555555555551 222333444333333    34566677777766555  346777788888888888889999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          329 AYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDG-FMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       329 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      +..+++...+.+ +-|..+|......-...|+.+.|..+|+-.++.. .......+.+.|+.=...|.++.|..+++.+.
T Consensus       456 cRkLYEkfle~~-Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL  534 (677)
T KOG1915|consen  456 CRKLYEKFLEFS-PENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL  534 (677)
T ss_pred             HHHHHHHHHhcC-hHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence            999999988854 3367788888777778899999999999887752 22234456666666678899999999999887


Q ss_pred             ccCC
Q 014507          408 LRET  411 (423)
Q Consensus       408 ~~~~  411 (423)
                      +...
T Consensus       535 ~rt~  538 (677)
T KOG1915|consen  535 DRTQ  538 (677)
T ss_pred             Hhcc
Confidence            6543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.02  E-value=2.9e-06  Score=79.59  Aligned_cols=296  Identities=12%  Similarity=0.044  Sum_probs=205.1

Q ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHhc--CCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Q 014507          105 AFVKQIICVSPETGNLSDLLAAWVRFM--KPR-RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYG  181 (423)
Q Consensus       105 ~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  181 (423)
                      ..|......--..|..+....++++.+  .|- ...|....+..-..|+...+..+.....+... .+...|-..+..-.
T Consensus       551 slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~p-nseeiwlaavKle~  629 (913)
T KOG0495|consen  551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANP-NSEEIWLAAVKLEF  629 (913)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCC-CcHHHHHHHHHHhh
Confidence            445555554445577777777777752  232 23444444555567888888888777777653 36677877888888


Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCChhHHH
Q 014507          182 KKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK-RSYGSMVMAYVRAGMLDRGE  260 (423)
Q Consensus       182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~-~~~~~li~~~~~~~~~~~a~  260 (423)
                      ...+++.|..+|.+....  .|+...|.--+..-.-.++.++|.+++++..+.  -|+- ..|-.+...+-+.++.+.|.
T Consensus       630 en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR  705 (913)
T KOG0495|consen  630 ENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAR  705 (913)
T ss_pred             ccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHH
Confidence            888888888888776664  456666665555555677788888888777764  3443 34656666666777777777


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-
Q 014507          261 VLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA-  339 (423)
Q Consensus       261 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-  339 (423)
                      ..|..-.+. ++-..-.|-.|...--+.|.+-+|..+++...-++ +.+...|-..|+.-.+.|..+.|..+..+..+. 
T Consensus       706 ~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQec  783 (913)
T KOG0495|consen  706 EAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQEC  783 (913)
T ss_pred             HHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            766554443 22234467777777777788888888888877664 447788888888888888888887776654421 


Q ss_pred             ---C-------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 014507          340 ---G-------------------------LEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFK  391 (423)
Q Consensus       340 ---~-------------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~  391 (423)
                         |                         ..-|+.....+...+-...+++.|.+.|.+..+.+ +.+..+|.-+...+.
T Consensus       784 p~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel  862 (913)
T KOG0495|consen  784 PSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFEL  862 (913)
T ss_pred             CccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHH
Confidence               1                         12344555666667777788999999999988863 345788899999999


Q ss_pred             HcCCHHHHHHHHHHhcc
Q 014507          392 RLGVVEEVEHVLREYGL  408 (423)
Q Consensus       392 ~~g~~~~A~~~~~~m~~  408 (423)
                      +.|.-++-.++++....
T Consensus       863 ~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  863 RHGTEEDQKEVLKKCET  879 (913)
T ss_pred             HhCCHHHHHHHHHHHhc
Confidence            99998888888887654

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.00  E-value=7.7e-07  Score=73.05  Aligned_cols=197  Identities=14%  Similarity=0.077  Sum_probs=101.6

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507          173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR  252 (423)
Q Consensus       173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  252 (423)
                      ..-+.-.|...|+...|..-+++..+.... +..+|..+...|.+.|+.+.|.+.|++..+.. +-+-.+.|....-+|.
T Consensus        38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~  115 (250)
T COG3063          38 RLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCA  115 (250)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHh
Confidence            333444555556666666666665555332 44555555555556666666666665555543 2234445555555555


Q ss_pred             cCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507          253 AGMLDRGEVLLREMDAQE-VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYT  331 (423)
Q Consensus       253 ~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  331 (423)
                      .|++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.+...+.|++-.|..
T Consensus       116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar~  194 (250)
T COG3063         116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPARL  194 (250)
T ss_pred             CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHHH
Confidence            556666665555554431 11123355555555555555555555555555432 1122334445555555555555555


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          332 AFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       332 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                      +++.....+. ++..+....|+.-...|+.+.+.++=..+.+
T Consensus       195 ~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r  235 (250)
T COG3063         195 YLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR  235 (250)
T ss_pred             HHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            5555554442 5555555555555555555555544444433

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.94  E-value=2.9e-06  Score=69.75  Aligned_cols=196  Identities=15%  Similarity=0.039  Sum_probs=133.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS  286 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  286 (423)
                      +...|.-.|.+.|+...|..-+++..+.. +-+..+|..+...|-+.|+.+.|.+-|++..+.... +..+.|..-..+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence            34455667777777777777777777764 334567777777777777777777777777776544 5567777777777


Q ss_pred             hCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507          287 MNGNSEGAQRVFEAIQFAGI-TPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRAL  365 (423)
Q Consensus       287 ~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  365 (423)
                      ..|++++|...|+.....-. .--..+|..+.-+..+.|+.+.|.+.|++-.+.. +-...+...+.....+.|++..|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcccchHHH
Confidence            77777777777777665211 1134566677767777777777777777776642 112455666677777777777777


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          366 EFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       366 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      .+++.....+. ++....-..|+.-.+.|+.+.+.++=..+
T Consensus       194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL  233 (250)
T COG3063         194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL  233 (250)
T ss_pred             HHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            77777766644 77777777777777777777776654444

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.94  E-value=1.1e-05  Score=74.85  Aligned_cols=298  Identities=11%  Similarity=-0.045  Sum_probs=176.5

Q ss_pred             HHHHHhccCCCCCHHHHHHHHHHh---c--CCChhhHH-HHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHH---HH
Q 014507          107 VKQIICVSPETGNLSDLLAAWVRF---M--KPRRADWL-AVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTK---II  177 (423)
Q Consensus       107 ~~~ll~~~~~~g~~~~a~~~~~~~---~--~p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~---li  177 (423)
                      |..+...+...|+.+.+.+.+.+.   .  .++..... .....+...|+.+.+...++...+.. +.|...+..   ..
T Consensus         9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~~~   87 (355)
T cd05804           9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLGAF   87 (355)
T ss_pred             HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHHHH
Confidence            333344444556666666555553   1  22221111 12224456788999988888877664 334444442   11


Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 014507          178 HGYGKKMQIQNAENTLLAMKRRGFICD-QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGML  256 (423)
Q Consensus       178 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~  256 (423)
                      ......+..+.+.+.++.  ..+..|+ ......+...+...|++++|...+++..+.. +.+...+..+...+...|++
T Consensus        88 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~  164 (355)
T cd05804          88 GLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRF  164 (355)
T ss_pred             HhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCH
Confidence            222234555556655554  1122233 3445566678889999999999999999875 44567888899999999999


Q ss_pred             hHHHHHHHHHHhCCC-CCCH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCHHHH
Q 014507          257 DRGEVLLREMDAQEV-YVGS--EVYKALLRGYSMNGNSEGAQRVFEAIQFAGI-TPDARMC-A--LLINAYQMAGQSQKA  329 (423)
Q Consensus       257 ~~a~~~~~~m~~~~~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~a  329 (423)
                      ++|...+++..+... .|+.  ..|..+...+...|+.++|.+++++...... .+..... +  .++.-+...|..+.+
T Consensus       165 ~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~  244 (355)
T cd05804         165 KEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVG  244 (355)
T ss_pred             HHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChH
Confidence            999999998877532 2232  3456788889999999999999999864321 1222211 1  223333444433333


Q ss_pred             HHH--HHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--------cCHHHHHHHHHHHHHcCCHH
Q 014507          330 YTA--FQNMRKAGL--EPSDKCVALILSACEKENQLNRALEFLIDLERDGFM--------VGKEASCTLAAWFKRLGVVE  397 (423)
Q Consensus       330 ~~~--~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--------~~~~~~~~l~~~~~~~g~~~  397 (423)
                      .++  .........  ............++...|+.+.|..+++.+......        ......-...-++...|+++
T Consensus       245 ~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~  324 (355)
T cd05804         245 DRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYA  324 (355)
T ss_pred             HHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHH
Confidence            332  111111110  111222235667778899999999999988764222        01222233334456899999


Q ss_pred             HHHHHHHHhcc
Q 014507          398 EVEHVLREYGL  408 (423)
Q Consensus       398 ~A~~~~~~m~~  408 (423)
                      +|.+.+.....
T Consensus       325 ~A~~~L~~al~  335 (355)
T cd05804         325 TALELLGPVRD  335 (355)
T ss_pred             HHHHHHHHHHH
Confidence            99999876543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.86  E-value=5.1e-05  Score=68.94  Aligned_cols=135  Identities=13%  Similarity=0.087  Sum_probs=85.7

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHH--------HHHHcCCHHHHHHHHHHHHH-----
Q 014507          274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDA--RMCALLIN--------AYQMAGQSQKAYTAFQNMRK-----  338 (423)
Q Consensus       274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~--~~~~~li~--------~~~~~g~~~~a~~~~~~m~~-----  338 (423)
                      |-.+|--.+..-...|+.+...++|+..... ++|-.  ..|...|-        .-....+.+.+.++|+...+     
T Consensus       321 nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHk  399 (677)
T KOG1915|consen  321 NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHK  399 (677)
T ss_pred             CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcc
Confidence            5557777777777889999999999988854 45521  12222211        11234566666666654432     


Q ss_pred             -------------------------------CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 014507          339 -------------------------------AGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLA  387 (423)
Q Consensus       339 -------------------------------~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~  387 (423)
                                                     -|.-|-..+|...|..-.+.+.++.+..++++..+.+ +-|..+|....
T Consensus       400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~c~~W~kya  478 (677)
T KOG1915|consen  400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PENCYAWSKYA  478 (677)
T ss_pred             cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHhhHHHHHHH
Confidence                                           2445666666666666667777777777777777753 23566676666


Q ss_pred             HHHHHcCCHHHHHHHHHHhcccC
Q 014507          388 AWFKRLGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       388 ~~~~~~g~~~~A~~~~~~m~~~~  410 (423)
                      ..=...|+++.|..+|.--.+..
T Consensus       479 ElE~~LgdtdRaRaifelAi~qp  501 (677)
T KOG1915|consen  479 ELETSLGDTDRARAIFELAISQP  501 (677)
T ss_pred             HHHHHhhhHHHHHHHHHHHhcCc
Confidence            66667788888888877655443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.85  E-value=1.7e-05  Score=73.65  Aligned_cols=268  Identities=13%  Similarity=-0.019  Sum_probs=165.1

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHhhccc-CCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          137 DWLAVLKQLKLMEHPLYLQVAELALLEESF-EANI-RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVM  214 (423)
Q Consensus       137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  214 (423)
                      .|..+...+...++.+.+...+....+... .++. .........+...|++++|.+.+++..+... .|...+.. ...
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P-~~~~a~~~-~~~   85 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP-RDLLALKL-HLG   85 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHH-hHH
Confidence            344444555556777765444444333221 2232 2222334456788999999999999888733 24445443 223


Q ss_pred             HHH----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 014507          215 YSK----AGNLKMAEETFEEIKLLGEPLD-KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG  289 (423)
Q Consensus       215 ~~~----~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  289 (423)
                      +..    .+..+.+.+.+..  .....|+ ......+...+...|++++|...+++..+.... +...+..+...+...|
T Consensus        86 ~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g  162 (355)
T cd05804          86 AFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQG  162 (355)
T ss_pred             HHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcC
Confidence            333    3445555555544  1122333 344556667888999999999999999987643 5678888999999999


Q ss_pred             CHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHHcCCHH
Q 014507          290 NSEGAQRVFEAIQFAGI-TPDA--RMCALLINAYQMAGQSQKAYTAFQNMRKAGL-EPSDKCV-A--LILSACEKENQLN  362 (423)
Q Consensus       290 ~~~~a~~~~~~m~~~g~-~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~  362 (423)
                      ++++|...+++...... .|+.  ..|..+...+...|++++|.+++++...... .+..... +  .++.-+...|...
T Consensus       163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  242 (355)
T cd05804         163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD  242 (355)
T ss_pred             CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence            99999999998876421 2332  3466788899999999999999999864322 1222211 1  3333344455433


Q ss_pred             HHHHH--HHHHHHCCC--CcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          363 RALEF--LIDLERDGF--MVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       363 ~a~~~--~~~m~~~g~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      .+.++  +........  ............++...|+.++|..+++.+...
T Consensus       243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~  293 (355)
T cd05804         243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGR  293 (355)
T ss_pred             hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            33333  211111111  111222235777788899999999999988653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PF12854 PPR_1: PPR repeat

Probab=98.83  E-value=7.1e-09  Score=59.11  Aligned_cols=33  Identities=21%  Similarity=0.177  Sum_probs=25.7

Q ss_pred             CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          375 GFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       375 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      |+.||..+|++||++|++.|++++|.++|++|+
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~   34 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK   34 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence            677788888888888888888888888877774

>PF12854 PPR_1: PPR repeat

Probab=98.83  E-value=5.8e-09  Score=59.48  Aligned_cols=32  Identities=34%  Similarity=0.612  Sum_probs=17.2

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          305 GITPDARMCALLINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       305 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  336 (423)
                      |+.||..|||++|.+|++.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44555555555555555555555555555554

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=6.3e-06  Score=76.21  Aligned_cols=257  Identities=12%  Similarity=0.011  Sum_probs=200.3

Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507          140 AVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG  219 (423)
Q Consensus       140 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  219 (423)
                      .-..-|...+++.+...+...+++.. +++...+-.-|.++...|+..+-..+=.++.+.- +-...+|-++.-.|.-.|
T Consensus       249 ~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~  326 (611)
T KOG1173|consen  249 EKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIG  326 (611)
T ss_pred             HHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhc
Confidence            33344555788888888888777654 4566666667778889999888888888888873 337789999999898999


Q ss_pred             CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 014507          220 NLKMAEETFEEIKLLGEPLD-KRSYGSMVMAYVRAGMLDRGEVLLREMDAQ--EVYVGSEVYKALLRGYSMNGNSEGAQR  296 (423)
Q Consensus       220 ~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~  296 (423)
                      ...+|.+.|.+....  .|. ...|-.+..+|+-.|..|+|+..+...-+.  |.. -+..|  +.--|.+.++.+.|.+
T Consensus       327 k~seARry~SKat~l--D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP~LY--lgmey~~t~n~kLAe~  401 (611)
T KOG1173|consen  327 KYSEARRYFSKATTL--DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LPSLY--LGMEYMRTNNLKLAEK  401 (611)
T ss_pred             CcHHHHHHHHHHhhc--CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-chHHH--HHHHHHHhccHHHHHH
Confidence            999999999887654  333 357888899999999999999988776652  221 11222  3345778899999999


Q ss_pred             HHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507          297 VFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKA-----GLE-PSDKCVALILSACEKENQLNRALEFLI  369 (423)
Q Consensus       297 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~  369 (423)
                      .|......  -| |+...+-+.-.....+.+.+|..+|+.....     .-. .-..+++.|..+|.+.+++++|+..++
T Consensus       402 Ff~~A~ai--~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q  479 (611)
T KOG1173|consen  402 FFKQALAI--APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ  479 (611)
T ss_pred             HHHHHHhc--CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence            99888754  44 7778888877778889999999999887631     111 134579999999999999999999999


Q ss_pred             HHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          370 DLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       370 ~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      +.... .+-+..++.++.-.|...|+++.|.+.|.+-
T Consensus       480 ~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKa  515 (611)
T KOG1173|consen  480 KALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKA  515 (611)
T ss_pred             HHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            98886 4568999999999999999999999999863

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=3.8e-05  Score=68.55  Aligned_cols=236  Identities=11%  Similarity=0.032  Sum_probs=136.7

Q ss_pred             cccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014507          164 ESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY  243 (423)
Q Consensus       164 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~  243 (423)
                      .-++-|+.....+...+...|+.++|+..|+.....++- +......-.-.+.+.|+.+....+...+.... +-+...|
T Consensus       226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~w  303 (564)
T KOG1174|consen  226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHW  303 (564)
T ss_pred             ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhh
Confidence            345677888888888888889888888888887665211 11111111222345555555555555544321 1122222


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHH
Q 014507          244 GSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQM  322 (423)
Q Consensus       244 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~  322 (423)
                      -.-.......++++.|+.+-++.++.+.. +...|-.--..+...|++++|.=-|+....-  .| +..+|.-++.+|..
T Consensus       304 fV~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~L--ap~rL~~Y~GL~hsYLA  380 (564)
T KOG1174|consen  304 FVHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQML--APYRLEIYRGLFHSYLA  380 (564)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhc--chhhHHHHHHHHHHHHh
Confidence            22222233344455555554444443221 2223322233444445555555555444432  22 44455555555555


Q ss_pred             cCCHHHH------------------------------------HHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 014507          323 AGQSQKA------------------------------------YTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRAL  365 (423)
Q Consensus       323 ~g~~~~a------------------------------------~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~  365 (423)
                      .|.+.+|                                    .++++.-.+  +.|+ ....+.+...|...|+.++++
T Consensus       381 ~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i  458 (564)
T KOG1174|consen  381 QKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDII  458 (564)
T ss_pred             hchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHH
Confidence            5544444                                    444443332  4565 456677788889999999999


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          366 EFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       366 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      .++++...  ..||....+.|.+.+.....+++|.+.|..-..
T Consensus       459 ~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr  499 (564)
T KOG1174|consen  459 KLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR  499 (564)
T ss_pred             HHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            99998877  468889999999999999999999998876543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.79  E-value=1.3e-06  Score=79.13  Aligned_cols=217  Identities=13%  Similarity=0.068  Sum_probs=126.2

Q ss_pred             cCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507          148 MEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEET  227 (423)
Q Consensus       148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~  227 (423)
                      .|+...+..-+...+.....++. .|--+...|....+-++....|+...+.+.. +..+|..-...+.-.+++++|..=
T Consensus       339 ~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aD  416 (606)
T KOG0547|consen  339 KGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIAD  416 (606)
T ss_pred             cCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHH
Confidence            45555555555555544332222 2555556666666777777777766666443 555666666666666677777777


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 014507          228 FEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGIT  307 (423)
Q Consensus       228 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  307 (423)
                      |++..... +-+...|.-+..+..+.+.+++++..|++.++. .+..+..|+.....+...+++++|.+.|+...+.  .
T Consensus       417 F~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L--E  492 (606)
T KOG0547|consen  417 FQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL--E  492 (606)
T ss_pred             HHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh--c
Confidence            76666543 224455666666666666777777777776665 3334566666667777777777777777665542  1


Q ss_pred             CC-------H--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          308 PD-------A--RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       308 p~-------~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                      |+       .  ..--.++ .+.-.+++..|..+++...+..  | ....|..|...-.+.|+.++|+++|++...
T Consensus       493 ~~~~~~~v~~~plV~Ka~l-~~qwk~d~~~a~~Ll~KA~e~D--pkce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  493 PREHLIIVNAAPLVHKALL-VLQWKEDINQAENLLRKAIELD--PKCEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             cccccccccchhhhhhhHh-hhchhhhHHHHHHHHHHHHccC--chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            21       1  1111111 1113366677777777666532  3 244566666666677777777777766543

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.77  E-value=4.5e-05  Score=71.82  Aligned_cols=361  Identities=15%  Similarity=0.159  Sum_probs=215.7

Q ss_pred             ccccccchhhhhhhcCchhhHhhhhhcccccccccCCC-cceeeeeeccccchH-HHHHHhcCChhhhh---hhHHHHHH
Q 014507           35 NLSLHRKPAKWSRSLRSGPALEAIKAEDMGKTQVKDDT-SMFTWIQIGPNITEE-QKQAISQFPRKMTK---RCKAFVKQ  109 (423)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~m~~~g~~~~~-~~~~~~~l~~~~~~~-~~~~a~~~~~~m~~---~~~~~~~~  109 (423)
                      |.++--.-++.++.|+-++|...      ++.|+.-+. +-+.|.++.-.+... ..+.|.+-|...-.   -|...|..
T Consensus        41 geslAmkGL~L~~lg~~~ea~~~------vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrD  114 (700)
T KOG1156|consen   41 GESLAMKGLTLNCLGKKEEAYEL------VRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRD  114 (700)
T ss_pred             chhHHhccchhhcccchHHHHHH------HHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            44444444444777777777544      444544333 446777766555533 33666666665432   34555666


Q ss_pred             HHhccCCCCCHHHHHHHHHHhc--CCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcc-cCCCHHHHHHHH------HH
Q 014507          110 IICVSPETGNLSDLLAAWVRFM--KPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEES-FEANIRDYTKII------HG  179 (423)
Q Consensus       110 ll~~~~~~g~~~~a~~~~~~~~--~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~li------~~  179 (423)
                      +--.=++.|+++...+...+..  .|+. ..|..+..+.--.|+...|..+.....+.. -.|+...|....      ..
T Consensus       115 lslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i  194 (700)
T KOG1156|consen  115 LSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQI  194 (700)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH
Confidence            5555566777777777776653  3433 456666666666777777777766665543 245555544333      23


Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCChh
Q 014507          180 YGKKMQIQNAENTLLAMKRRGFICDQVT-LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS-MVMAYVRAGMLD  257 (423)
Q Consensus       180 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li~~~~~~~~~~  257 (423)
                      ..+.|..+.|.+.+..-... +. |... -.+-...+.+.+++++|..+|..+...  .||..-|.. +..++.+..+.-
T Consensus       195 ~~E~g~~q~ale~L~~~e~~-i~-Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~  270 (700)
T KOG1156|consen  195 LIEAGSLQKALEHLLDNEKQ-IV-DKLAFEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDML  270 (700)
T ss_pred             HHHcccHHHHHHHHHhhhhH-HH-HHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhH
Confidence            44567777777666555443 11 3222 234556677788888888888888876  355555444 333443232222


Q ss_pred             HHH-HHHHHH----------------------------------HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507          258 RGE-VLLREM----------------------------------DAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQ  302 (423)
Q Consensus       258 ~a~-~~~~~m----------------------------------~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  302 (423)
                      ++. .+|...                                  .+.|+++   ++..+...|-.-...+-.+++.-.+.
T Consensus       271 ~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~  347 (700)
T KOG1156|consen  271 EALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQ  347 (700)
T ss_pred             HHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHH
Confidence            222 334333                                  2333322   33333333322222221222222221


Q ss_pred             H--CC------------CCCCHHHHH--HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHH
Q 014507          303 F--AG------------ITPDARMCA--LLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRAL  365 (423)
Q Consensus       303 ~--~g------------~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~  365 (423)
                      .  .|            -+|....|+  .++..+-..|+++.|+.+++....+  .|+ ...|..=.+.+...|+++.|.
T Consensus       348 ~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa  425 (700)
T KOG1156|consen  348 HSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAA  425 (700)
T ss_pred             hhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHH
Confidence            1  01            145555554  4678889999999999999998864  566 445656667888999999999


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507          366 EFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRET  411 (423)
Q Consensus       366 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  411 (423)
                      .++++..+-. .+|...-..-..-..++.+.++|.++.....+.+.
T Consensus       426 ~~l~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  426 AWLDEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence            9999988763 46776666777777889999999999999877764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=1.7e-05  Score=70.64  Aligned_cols=262  Identities=10%  Similarity=0.018  Sum_probs=192.6

Q ss_pred             hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChh----hHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHH
Q 014507          102 RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRA----DWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTK  175 (423)
Q Consensus       102 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  175 (423)
                      -|+.....+.+++...|+.++|...|++.  ..|+..    .|..|   +.+.|+.+....+...++... +.+...|-.
T Consensus       230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~L---L~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV  305 (564)
T KOG1174|consen  230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVL---LGQEGGCEQDSALMDYLFAKV-KYTASHWFV  305 (564)
T ss_pred             ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHH---HHhccCHhhHHHHHHHHHhhh-hcchhhhhh
Confidence            36667788888999999999999999886  555542    23333   345777777766666555432 345555655


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507          176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM  255 (423)
Q Consensus       176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~  255 (423)
                      -........+++.|+.+-++..+.... +...|-.-...+...|+.++|.-.|+..+... +-+...|.-|+.+|...|.
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence            566667788999999998888776322 44555545567788899999999999988753 4578899999999999999


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhC-CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 014507          256 LDRGEVLLREMDAQEVYVGSEVYKALL-RGYSMN-GNSEGAQRVFEAIQFAGITPD-ARMCALLINAYQMAGQSQKAYTA  332 (423)
Q Consensus       256 ~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~-g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~  332 (423)
                      +.+|.-+-+...+. ++.+..+.+.+- ..+.-. .--++|..+++.-...  .|+ ....+.+...+...|..+.+..+
T Consensus       384 ~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L  460 (564)
T KOG1174|consen  384 FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL  460 (564)
T ss_pred             HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence            99988777665543 222444444441 222222 2347788888877654  564 45677888889999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          333 FQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       333 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      ++.-..  ..||....+.|...+...+.+.++.+.|....+.
T Consensus       461 Le~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  461 LEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            998876  5799999999999999999999999999988774

>PLN02789 farnesyltranstransferase

Probab=98.74  E-value=2.6e-05  Score=70.25  Aligned_cols=231  Identities=7%  Similarity=-0.048  Sum_probs=131.4

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507          176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG-NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG  254 (423)
Q Consensus       176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~  254 (423)
                      +-..+...++.++|+.+.+++.+.... +..+|+..-..+...| ++++++..++++.+.. +-+..+|+.....+.+.|
T Consensus        43 ~ra~l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~  120 (320)
T PLN02789         43 FRAVYASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLG  120 (320)
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcC
Confidence            334444556666777777766665322 3344554444445555 4567777777766654 224445554444444455


Q ss_pred             Ch--hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCH---
Q 014507          255 ML--DRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMA---GQS---  326 (423)
Q Consensus       255 ~~--~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~---  326 (423)
                      +.  +++..+++++.+.+.. +..+|+....++.+.|+++++++.++++.+.+ .-+...|+....++.+.   |..   
T Consensus       121 ~~~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d-~~N~sAW~~R~~vl~~~~~l~~~~~~  198 (320)
T PLN02789        121 PDAANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED-VRNNSAWNQRYFVITRSPLLGGLEAM  198 (320)
T ss_pred             chhhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC-CCchhHHHHHHHHHHhcccccccccc
Confidence            42  4566666666666554 66667666666667777777777777776654 23555565555444443   222   


Q ss_pred             -HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC------
Q 014507          327 -QKAYTAFQNMRKAGLEP-SDKCVALILSACEKE----NQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLG------  394 (423)
Q Consensus       327 -~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g------  394 (423)
                       ++..++..++.+.  .| |...|+.+...+...    +...+|.+++.+..+.+ +.+......|++.|+...      
T Consensus       199 ~e~el~y~~~aI~~--~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~  275 (320)
T PLN02789        199 RDSELKYTIDAILA--NPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEF  275 (320)
T ss_pred             HHHHHHHHHHHHHh--CCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhh
Confidence             3455555555543  33 455666666666552    23345666666655532 245566677777776532      


Q ss_pred             ------------CHHHHHHHHHHhcccCCcC
Q 014507          395 ------------VVEEVEHVLREYGLRETYS  413 (423)
Q Consensus       395 ------------~~~~A~~~~~~m~~~~~~~  413 (423)
                                  ..++|.++++.+.+.+.+.
T Consensus       276 ~~~~~~~~~~~~~~~~a~~~~~~l~~~d~ir  306 (320)
T PLN02789        276 RDTVDTLAEELSDSTLAQAVCSELEVADPMR  306 (320)
T ss_pred             hhhhhccccccccHHHHHHHHHHHHhhCcHH
Confidence                        3467888888886555443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.74  E-value=4e-07  Score=80.74  Aligned_cols=242  Identities=10%  Similarity=0.059  Sum_probs=121.5

Q ss_pred             CCCHHHHHHHHHHh-cCCC--hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHH
Q 014507          117 TGNLSDLLAAWVRF-MKPR--RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTL  193 (423)
Q Consensus       117 ~g~~~~a~~~~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  193 (423)
                      .|++..++.-.+.- ..|+  ......+.+++...|..+.+.   ..+.. +..|.......+...+...++-+.+..-+
T Consensus        14 ~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~-~~~~~l~av~~la~y~~~~~~~e~~l~~l   89 (290)
T PF04733_consen   14 LGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKK-SSSPELQAVRLLAEYLSSPSDKESALEEL   89 (290)
T ss_dssp             TT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-T-TSSCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred             hhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhcc-CCChhHHHHHHHHHHHhCccchHHHHHHH
Confidence            45566665444311 1111  123334455555566544332   21212 22455555544444443333444444444


Q ss_pred             HHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Q 014507          194 LAMKRRGFICDQVTLT-VMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY  272 (423)
Q Consensus       194 ~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  272 (423)
                      ++....+..++..++. .....+...|++++|++++...      .+.......+..|.+.+++|.|.+.++.|.+.+  
T Consensus        90 ~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--  161 (290)
T PF04733_consen   90 KELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--  161 (290)
T ss_dssp             HHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--
T ss_pred             HHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--
Confidence            3332222222222222 2223444567777777666532      345566666677777777777777777776643  


Q ss_pred             CCHHHHHHHHHHH----HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014507          273 VGSEVYKALLRGY----SMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCV  348 (423)
Q Consensus       273 p~~~~~~~li~~~----~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  348 (423)
                      .|. +...+..++    .-.+.+.+|..+|+++.+. ..++..+.|.+.-++...|++++|.+++.+..+.+ +-|..+.
T Consensus       162 eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~L  238 (290)
T PF04733_consen  162 EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTL  238 (290)
T ss_dssp             CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHH
T ss_pred             CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHH
Confidence            232 233333332    2233567777777776543 34566777777777777777777777777765432 2245566


Q ss_pred             HHHHHHHHHcCCH-HHHHHHHHHHHH
Q 014507          349 ALILSACEKENQL-NRALEFLIDLER  373 (423)
Q Consensus       349 ~~li~~~~~~g~~-~~a~~~~~~m~~  373 (423)
                      ..++......|+. +.+.+.+.++..
T Consensus       239 aNliv~~~~~gk~~~~~~~~l~qL~~  264 (290)
T PF04733_consen  239 ANLIVCSLHLGKPTEAAERYLSQLKQ  264 (290)
T ss_dssp             HHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred             HHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            6666666666666 556666666665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.70  E-value=7.1e-07  Score=79.18  Aligned_cols=224  Identities=13%  Similarity=0.074  Sum_probs=151.6

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYG-SMVM  248 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~  248 (423)
                      ...-..+.+++...|+.+.+.   .++.... .|.......+...+...++-+.+..-+++....+..++..++. ....
T Consensus        35 ~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~  110 (290)
T PF04733_consen   35 LERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAAT  110 (290)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            344556788899999877544   4443433 6666666655555544455555655555544333332333333 3334


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----HcC
Q 014507          249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQ----MAG  324 (423)
Q Consensus       249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g  324 (423)
                      .+...|++++|++++..-      .+.......+..|.+.++++.|.+.++.|.+.  ..|.. ...+..++.    ..+
T Consensus       111 i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~eD~~-l~qLa~awv~l~~g~e  181 (290)
T PF04733_consen  111 ILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DEDSI-LTQLAEAWVNLATGGE  181 (290)
T ss_dssp             HHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SCCHH-HHHHHHHHHHHHHTTT
T ss_pred             HHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHH-HHHHHHHHHHHHhCch
Confidence            455679999999888542      36678888999999999999999999999975  34433 333444433    344


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH-HHHHHHH
Q 014507          325 QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVV-EEVEHVL  403 (423)
Q Consensus       325 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~~  403 (423)
                      .+.+|..+|+++.+. ..++..+.+.+..+....|++++|.+++++..... +-+..+...++-+....|+. +.+.+++
T Consensus       182 ~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l  259 (290)
T PF04733_consen  182 KYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYL  259 (290)
T ss_dssp             CCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHH
Confidence            799999999998764 46788999999999999999999999999987653 34677777888888888888 7788898


Q ss_pred             HHhcc
Q 014507          404 REYGL  408 (423)
Q Consensus       404 ~~m~~  408 (423)
                      .+++.
T Consensus       260 ~qL~~  264 (290)
T PF04733_consen  260 SQLKQ  264 (290)
T ss_dssp             HHCHH
T ss_pred             HHHHH
Confidence            88775

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.65  E-value=9.8e-06  Score=75.19  Aligned_cols=247  Identities=16%  Similarity=0.136  Sum_probs=182.4

Q ss_pred             HhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507          146 KLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAE  225 (423)
Q Consensus       146 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  225 (423)
                      .+.|+...|...++..++.. +-+...|-.|.......++-..|+..+.+..+.... +....-.|.-.|...|.-..|+
T Consensus       296 m~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  296 MKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence            45677777777777666655 457788988888889999999999999998888544 6778888888899999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHH-----------HHHHHcCChhHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHhCCCHHH
Q 014507          226 ETFEEIKLLGEPLDKRSYGSMV-----------MAYVRAGMLDRGEVLLREMD-AQEVYVGSEVYKALLRGYSMNGNSEG  293 (423)
Q Consensus       226 ~~~~~m~~~g~~~~~~~~~~li-----------~~~~~~~~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~  293 (423)
                      +.++.......+     |..+.           ........+....++|-++. ..+..+|..++..|--.|--.|++++
T Consensus       374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999888654311     00000           11112222334555555544 45555788899999999999999999


Q ss_pred             HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          294 AQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDL  371 (423)
Q Consensus       294 a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m  371 (423)
                      |...|+.....  +| |...||.|-..++...+.++|..-|++..+  ++|+ ......|.-+|...|.+++|.+.|-..
T Consensus       449 aiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  449 AVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            99999998874  56 788999999999999999999999999987  6776 445566777899999999998887765


Q ss_pred             HH---C------CCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          372 ER---D------GFMVGKEASCTLAAWFKRLGVVEEVEHVL  403 (423)
Q Consensus       372 ~~---~------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~  403 (423)
                      +.   .      +..++...|..|=.++.-.++.+-+.++.
T Consensus       525 L~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~  565 (579)
T KOG1125|consen  525 LSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA  565 (579)
T ss_pred             HHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence            42   2      11224467777777777777777665544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.60  E-value=1.4e-05  Score=69.44  Aligned_cols=185  Identities=11%  Similarity=0.025  Sum_probs=124.1

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH--HHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK---RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGS--EVY  278 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~  278 (423)
                      ....+-.+...+.+.|++++|...|++..... +.+.   .++..+..++...|++++|...++++.+.......  .++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            56677778888888999999999998887753 2122   46677888888899999999999998875432111  244


Q ss_pred             HHHHHHHHhC--------CCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507          279 KALLRGYSMN--------GNSEGAQRVFEAIQFAGITPDA-RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA  349 (423)
Q Consensus       279 ~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  349 (423)
                      ..+..++.+.        |+.++|.+.++.+...  .|+. ..+..+.....    ....      ..        ....
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~------~~--------~~~~  170 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNR------LA--------GKEL  170 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHH------HH--------HHHH
Confidence            4455555544        6778888888888765  3432 22222211100    0000      00        0112


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          350 LILSACEKENQLNRALEFLIDLERDG--FMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       350 ~li~~~~~~g~~~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      .+...+.+.|++.+|...+++..+..  -+.....+..+..++.+.|++++|.++++.+..+
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            45566888999999999999988752  2234577888999999999999999999888654

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.59  E-value=1.1e-05  Score=68.83  Aligned_cols=320  Identities=9%  Similarity=0.013  Sum_probs=192.1

Q ss_pred             eeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChhhHHH-HHHHHHhcC
Q 014507           77 WIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRADWLA-VLKQLKLME  149 (423)
Q Consensus        77 ~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~~-ll~~~~~~~  149 (423)
                      +.+++..+.+ .+...+.+++..-.+   ++......+-.+|-...++..|-+.|++.  ..|...-|.. -...+.+.+
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~   92 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKAC   92 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhc
Confidence            4455554444 333555555544433   35556666777777888888888888876  4565555543 233556677


Q ss_pred             CchHHHHHHHHHhhcccCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507          150 HPLYLQVAELALLEESFEANIRDYTKIIHG--YGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEET  227 (423)
Q Consensus       150 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~  227 (423)
                      .+..|..+...|.+.   ++...-..-+.+  .-..+++..+..++++....|   +..+.+...-...+.|++++|.+-
T Consensus        93 i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvqk  166 (459)
T KOG4340|consen   93 IYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQK  166 (459)
T ss_pred             ccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHHH
Confidence            777777777665542   222222222222  234577777788877776443   455555555556688889999888


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-------------CH---------------HHHH
Q 014507          228 FEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV-------------GS---------------EVYK  279 (423)
Q Consensus       228 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-------------~~---------------~~~~  279 (423)
                      |+...+-|---....|+..+.. .+.|+.+.|++...++.++|+.-             |.               ..+|
T Consensus       167 FqaAlqvsGyqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfN  245 (459)
T KOG4340|consen  167 FQAALQVSGYQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFN  245 (459)
T ss_pred             HHHHHhhcCCCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhh
Confidence            8888775433356677765544 46688888999888888887651             11               1334


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507          280 ALLRGYSMNGNSEGAQRVFEAIQFAG-ITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKE  358 (423)
Q Consensus       280 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  358 (423)
                      .-...+.+.|+.+.|.+-+-.|.-+. ...|.+|...+.-. -..+++.+..+-+.-+.+.+. ....||..++-.||+.
T Consensus       246 LKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLllyCKN  323 (459)
T KOG4340|consen  246 LKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPETFANLLLLYCKN  323 (459)
T ss_pred             hhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChHHHHHHHHHHhhh
Confidence            44445567788888888887776432 23466666554432 223455555555555555432 3457888888888888


Q ss_pred             CCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHHH-cCCHHHHHHHHHHh
Q 014507          359 NQLNRALEFLIDLERDGFM-VGKEASCTLAAWFKR-LGVVEEVEHVLREY  406 (423)
Q Consensus       359 g~~~~a~~~~~~m~~~g~~-~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m  406 (423)
                      .-++.|-.++.+=-...+. .+...|+ |++++.- .-..++|.+-++.+
T Consensus       324 eyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~L  372 (459)
T KOG4340|consen  324 EYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGL  372 (459)
T ss_pred             HHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHH
Confidence            8888888877653222111 2344444 5555544 34466666655544

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.57  E-value=2.4e-05  Score=67.99  Aligned_cols=189  Identities=12%  Similarity=0.001  Sum_probs=130.6

Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HH
Q 014507          167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI-C-DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK--RS  242 (423)
Q Consensus       167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~--~~  242 (423)
                      ......+-.....+...|++++|...|+++...... | ....+..+..++.+.|++++|...++++.+.......  .+
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a  109 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA  109 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence            456777888889999999999999999999876322 1 1246777889999999999999999999876422111  24


Q ss_pred             HHHHHHHHHHc--------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507          243 YGSMVMAYVRA--------GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA  314 (423)
Q Consensus       243 ~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  314 (423)
                      +..+..++...        |+.+.|.+.++.+.+.... +...+..+.....    ..      ....        ....
T Consensus       110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~------~~~~--------~~~~  170 (235)
T TIGR03302       110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LR------NRLA--------GKEL  170 (235)
T ss_pred             HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HH------HHHH--------HHHH
Confidence            55556666654        6788999999999876443 2222222211100    00      0000        1112


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          315 LLINAYQMAGQSQKAYTAFQNMRKAGL-EP-SDKCVALILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       315 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      .+...|.+.|++++|...+++..+..- .| ....+..+..++...|++++|...++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            455678888999999999998877421 22 3567888889999999999999988887764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.56  E-value=2.1e-05  Score=74.98  Aligned_cols=231  Identities=12%  Similarity=0.071  Sum_probs=179.9

Q ss_pred             HHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHH
Q 014507          110 IICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNA  189 (423)
Q Consensus       110 ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  189 (423)
                      +...+...|-...|+.+|++     ...|..++..|...|+...|..+.....+  -+||+..|..+.+......-+++|
T Consensus       404 laell~slGitksAl~I~Er-----lemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEka  476 (777)
T KOG1128|consen  404 LAELLLSLGITKSALVIFER-----LEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKA  476 (777)
T ss_pred             HHHHHHHcchHHHHHHHHHh-----HHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHH
Confidence            44455677889999999987     45677788899999998899888777766  478999999999998888889999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 014507          190 ENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ  269 (423)
Q Consensus       190 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  269 (423)
                      .++++..-.+       .-..+.....+.+++.++.+.|+.-.+.. +....+|-.+..+..+.++++.|.+-|..-...
T Consensus       477 wElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvtL  548 (777)
T KOG1128|consen  477 WELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTL  548 (777)
T ss_pred             HHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence            9999876554       11122222234789999999998877754 456788988999999999999999999888775


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHH
Q 014507          270 EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG-LEPSDKCV  348 (423)
Q Consensus       270 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~  348 (423)
                      ... +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.+.+.++.+.. ..-|....
T Consensus       549 ~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl  626 (777)
T KOG1128|consen  549 EPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVL  626 (777)
T ss_pred             CCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhh
Confidence            443 56799999999999999999999999999876 4566677778888899999999999999887621 12255555


Q ss_pred             HHHHHHHHH
Q 014507          349 ALILSACEK  357 (423)
Q Consensus       349 ~~li~~~~~  357 (423)
                      ..++....+
T Consensus       627 ~~iv~~~~~  635 (777)
T KOG1128|consen  627 LIIVRTVLE  635 (777)
T ss_pred             HHHHHHHHh
Confidence            555555443

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.56  E-value=0.00012  Score=74.70  Aligned_cols=225  Identities=11%  Similarity=0.027  Sum_probs=175.3

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014507          168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR-GFICD---QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY  243 (423)
Q Consensus       168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~  243 (423)
                      -....|-..|..+...+++++|.+++++.... ++.-.   ...|.++++.-..-|.-+...++|++..+..  -....|
T Consensus      1456 NSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~ 1533 (1710)
T KOG1070|consen 1456 NSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVH 1533 (1710)
T ss_pred             CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHH
Confidence            34567888888999999999999999998765 22211   2357777777777788889999999998853  234568


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHH
Q 014507          244 GSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP---DARMCALLINAY  320 (423)
Q Consensus       244 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~  320 (423)
                      ..|...|.+.+..++|.++++.|.+.=- -....|...+..+.+..+-+.|..++.+..+.  .|   ......-.+..-
T Consensus      1534 ~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~--lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1534 LKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALKS--LPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh--cchhhhHHHHHHHHHHH
Confidence            8999999999999999999999987633 46779999999999999999999999988764  34   344455566667


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHHcCCHHH
Q 014507          321 QMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVG--KEASCTLAAWFKRLGVVEE  398 (423)
Q Consensus       321 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~  398 (423)
                      .+.|+.+.+..+|+...... +--...|+..++.-.++|+.+.+..+|++....++.|.  -..|...+..=-+.|+-+.
T Consensus      1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence            88999999999999988643 11345799999999999999999999999999888774  4556666664445566443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.51  E-value=0.00072  Score=64.01  Aligned_cols=299  Identities=11%  Similarity=0.054  Sum_probs=179.1

Q ss_pred             HHHHHHHHhccCCCCCHHHHHHHHHHhcC--CChhhHHHHHHHHHhcCCchHH----------------------HHHHH
Q 014507          104 KAFVKQIICVSPETGNLSDLLAAWVRFMK--PRRADWLAVLKQLKLMEHPLYL----------------------QVAEL  159 (423)
Q Consensus       104 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--p~~~~~~~ll~~~~~~~~~~~a----------------------~~~~~  159 (423)
                      ...|+.|.+.|.+.|.+++|.++|++.+.  -+...|..+..+|++......+                      ..-++
T Consensus       248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e  327 (835)
T KOG2047|consen  248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFE  327 (835)
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHH
Confidence            35799999999999999999999999743  3445566666666543221111                      11111


Q ss_pred             HHhhcc-----------cCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCCHH
Q 014507          160 ALLEES-----------FEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFIC------DQVTLTVMVVMYSKAGNLK  222 (423)
Q Consensus       160 ~~~~~~-----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~  222 (423)
                      .+....           -+.++..|..-+.  ...|+..+-...+.+..+. +.|      -...|..+...|-..|+++
T Consensus       328 ~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~  404 (835)
T KOG2047|consen  328 SLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLD  404 (835)
T ss_pred             HHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence            111111           1234444443333  2346667777777777654 332      1346788889999999999


Q ss_pred             HHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC----------CC-------CHHHHHHHH
Q 014507          223 MAEETFEEIKLLGEPLD---KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEV----------YV-------GSEVYKALL  282 (423)
Q Consensus       223 ~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----------~p-------~~~~~~~li  282 (423)
                      .|..+|++..+...+--   ..+|......=.+..+++.|+++.+.....--          .|       +...|...+
T Consensus       405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~  484 (835)
T KOG2047|consen  405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYA  484 (835)
T ss_pred             HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHH
Confidence            99999999887543211   23455555555667778888887776543211          11       234566666


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHH---c
Q 014507          283 RGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSD-KCVALILSACEK---E  358 (423)
Q Consensus       283 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~---~  358 (423)
                      +.--..|-++....+++.+.+..+. ++...-.....+-.+.-++++.+.|++-+..=-.|+. ..|+..+.-+.+   .
T Consensus       485 DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg  563 (835)
T KOG2047|consen  485 DLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGG  563 (835)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcC
Confidence            6666778888888888888765432 2222122222334566778888888776553223442 345555544433   3


Q ss_pred             CCHHHHHHHHHHHHHCCCCcCH-HH-HHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          359 NQLNRALEFLIDLERDGFMVGK-EA-SCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       359 g~~~~a~~~~~~m~~~g~~~~~-~~-~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      ..++.|..+|++..+ |.+|.. .+ |-.....=.+-|....|.+++++..
T Consensus       564 ~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat  613 (835)
T KOG2047|consen  564 TKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT  613 (835)
T ss_pred             CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            467888899988888 566542 22 2222222234577888888888743

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.50  E-value=0.00063  Score=59.57  Aligned_cols=293  Identities=13%  Similarity=0.055  Sum_probs=191.6

Q ss_pred             HHHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHH---HHHhcCCchHHHHHHHHHhhcccCCCHHHHHH-HHHHHHccC
Q 014507          109 QIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLK---QLKLMEHPLYLQVAELALLEESFEANIRDYTK-IIHGYGKKM  184 (423)
Q Consensus       109 ~ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~  184 (423)
                      -+-..+...|.+..|+.-|...+.-|+..|-++.+   .|...|+...|..-+..+++.  +||-..-.. =...+.+.|
T Consensus        43 ElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~G  120 (504)
T KOG0624|consen   43 ELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQG  120 (504)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcc
Confidence            34455556788888888888887777766666654   556677777666555555543  455433221 124567888


Q ss_pred             CHHHHHHHHHHHHHcCCCCC------------HHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507          185 QIQNAENTLLAMKRRGFICD------------QVT--LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY  250 (423)
Q Consensus       185 ~~~~a~~~~~~m~~~g~~p~------------~~~--~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  250 (423)
                      .++.|..=|+...+....-+            ...  ....+..+...|+...|+.....+.+.. +-|...|..-..+|
T Consensus       121 ele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~Rakc~  199 (504)
T KOG0624|consen  121 ELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQARAKCY  199 (504)
T ss_pred             cHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHHHHHH
Confidence            88888888888877633111            111  1233455566788888888888888765 34777888888888


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH----HHHH---------H
Q 014507          251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARM----CALL---------I  317 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~----~~~l---------i  317 (423)
                      ...|++..|..=++...+..-. ++.++.-+-..+...|+.+.++...++..+.  .||...    |..+         +
T Consensus       200 i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~  276 (504)
T KOG0624|consen  200 IAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESA  276 (504)
T ss_pred             HhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHH
Confidence            8888888888777776665443 5556666777788888888888888877764  454321    2111         1


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHHHHc
Q 014507          318 NAYQMAGQSQKAYTAFQNMRKAGLEPSD---KCVALILSACEKENQLNRALEFLIDLERDGFMV-GKEASCTLAAWFKRL  393 (423)
Q Consensus       318 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~~~~  393 (423)
                      ......++|-++++..+...+..-....   ..+..+-.++...|.+.+|+..-.+..+.  .| |+.++.--.++|.-.
T Consensus       277 e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~d  354 (504)
T KOG0624|consen  277 EQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGD  354 (504)
T ss_pred             HHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhh
Confidence            2234567777777777776664322112   23444445556677888888888877763  44 477888888888888


Q ss_pred             CCHHHHHHHHHHhccc
Q 014507          394 GVVEEVEHVLREYGLR  409 (423)
Q Consensus       394 g~~~~A~~~~~~m~~~  409 (423)
                      ..+++|+.=|+.-.+.
T Consensus       355 E~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  355 EMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            8888888877766554

>PLN02789 farnesyltranstransferase

Probab=98.50  E-value=0.00034  Score=63.09  Aligned_cols=168  Identities=7%  Similarity=-0.021  Sum_probs=82.2

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014507          185 QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNL--KMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVL  262 (423)
Q Consensus       185 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~  262 (423)
                      ++++++..++++.+...+ +..+|+.....+.+.|+.  +++..+++++.+.. +-+..+|+....++.+.|+++++++.
T Consensus        87 ~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~  164 (320)
T PLN02789         87 DLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEY  164 (320)
T ss_pred             hHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHH
Confidence            345555555555554333 333444433333334432  44555555555543 23455555555555555666666666


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhC---CC----HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCHHHHHH
Q 014507          263 LREMDAQEVYVGSEVYKALLRGYSMN---GN----SEGAQRVFEAIQFAGITPDARMCALLINAYQMA----GQSQKAYT  331 (423)
Q Consensus       263 ~~~m~~~~~~p~~~~~~~li~~~~~~---g~----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~  331 (423)
                      ++++.+.+.. +..+|+.....+.+.   |.    .++..+...++.... +-|...|+.+...+...    ++..+|.+
T Consensus       165 ~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~  242 (320)
T PLN02789        165 CHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSS  242 (320)
T ss_pred             HHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHH
Confidence            6666655544 444444444333332   11    133444444444331 22555666665555552    23345666


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHH
Q 014507          332 AFQNMRKAGLEPSDKCVALILSACEK  357 (423)
Q Consensus       332 ~~~~m~~~~~~p~~~~~~~li~~~~~  357 (423)
                      .+.+..+.+ ..+......|+..|+.
T Consensus       243 ~~~~~~~~~-~~s~~al~~l~d~~~~  267 (320)
T PLN02789        243 VCLEVLSKD-SNHVFALSDLLDLLCE  267 (320)
T ss_pred             HHHHhhccc-CCcHHHHHHHHHHHHh
Confidence            666655432 2234556666666654

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.49  E-value=0.00011  Score=74.93  Aligned_cols=236  Identities=9%  Similarity=0.012  Sum_probs=182.8

Q ss_pred             CCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhc-ccC---CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 014507          132 KPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEE-SFE---ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQV  206 (423)
Q Consensus       132 ~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  206 (423)
                      .|+. ..|..-|.-..+.++.+.|+.+.+..+.. ++.   --...|.++++.-..-|.-+...++|++..+.. . .-.
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-d-~~~ 1531 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-D-AYT 1531 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-c-hHH
Confidence            4655 56777777888899999998888876654 221   123467777777777788899999999998872 1 245


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHH
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VGSEVYKALLRGY  285 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~  285 (423)
                      .|..|...|.+.+.+++|.++|+.|.+.= .-....|...+..+.+.++-+.|..++.+..+.-.. -......-.+..-
T Consensus      1532 V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1532 VHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred             HHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence            78899999999999999999999999853 346788999999999999999999999998875322 1344566677788


Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHH
Q 014507          286 SMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSD--KCVALILSACEKENQLNR  363 (423)
Q Consensus       286 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~  363 (423)
                      .+.|+.+++..+|+...... +.-...|+..|+.-.++|+.+.+..+|++....++.|-.  ..|...+.---+.|+-+.
T Consensus      1611 Fk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~ 1689 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKN 1689 (1710)
T ss_pred             hhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhh
Confidence            89999999999999998753 336789999999999999999999999999998887753  455555555555666555


Q ss_pred             HHHHHHHH
Q 014507          364 ALEFLIDL  371 (423)
Q Consensus       364 a~~~~~~m  371 (423)
                      ++.+=.++
T Consensus      1690 vE~VKarA 1697 (1710)
T KOG1070|consen 1690 VEYVKARA 1697 (1710)
T ss_pred             HHHHHHHH
Confidence            44444443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.49  E-value=3.2e-05  Score=66.05  Aligned_cols=317  Identities=12%  Similarity=-0.015  Sum_probs=172.7

Q ss_pred             hhhhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHHH-HHHhcCChhhhh--hhHHHHHHH-HhccCCCCC
Q 014507           44 KWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQK-QAISQFPRKMTK--RCKAFVKQI-ICVSPETGN  119 (423)
Q Consensus        44 ~~~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~-~~a~~~~~~m~~--~~~~~~~~l-l~~~~~~g~  119 (423)
                      +..+..++..|+.+  +..-.+  -.|. +......+.-+|-+.+. ..|-.-++++..  |...-|.-. ...+-+.+.
T Consensus        19 ~lI~d~ry~DaI~~--l~s~~E--r~p~-~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i   93 (459)
T KOG4340|consen   19 RLIRDARYADAIQL--LGSELE--RSPR-SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACI   93 (459)
T ss_pred             HHHHHhhHHHHHHH--HHHHHh--cCcc-chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcc
Confidence            33677777777666  332222  1232 12333344444444333 444444444432  111112111 123335667


Q ss_pred             HHHHHHHHHHhcC-CChhhHHHHHHHHH--hcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Q 014507          120 LSDLLAAWVRFMK-PRRADWLAVLKQLK--LMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAM  196 (423)
Q Consensus       120 ~~~a~~~~~~~~~-p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  196 (423)
                      +..|+++...+.. |+...-..-+.+..  ..+++..++.+.++...   +-+..+.+.......+.|+++.|.+-|+..
T Consensus        94 ~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~---en~Ad~~in~gCllykegqyEaAvqkFqaA  170 (459)
T KOG4340|consen   94 YADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS---ENEADGQINLGCLLYKEGQYEAAVQKFQAA  170 (459)
T ss_pred             cHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccC---CCccchhccchheeeccccHHHHHHHHHHH
Confidence            7888888877754 43333222333332  35666666666554432   234555555566667888888888888887


Q ss_pred             HHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------CCHH--------HHHHHH-------
Q 014507          197 KRR-GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP-------------LDKR--------SYGSMV-------  247 (423)
Q Consensus       197 ~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------~~~~--------~~~~li-------  247 (423)
                      .+- |+. ....||..+.. .+.|+.+.|+++..++.++|++             ||+.        .-..++       
T Consensus       171 lqvsGyq-pllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKa  248 (459)
T KOG4340|consen  171 LQVSGYQ-PLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKA  248 (459)
T ss_pred             HhhcCCC-chhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhh
Confidence            665 555 45677755544 4678888888888888888864             1211        122222       


Q ss_pred             HHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507          248 MAYVRAGMLDRGEVLLREMDAQ-EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS  326 (423)
Q Consensus       248 ~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  326 (423)
                      ..+.+.|+++.|.+-+-+|.-+ ....|+.|...+.-.=. .+++.+..+-+..+...+ +-...||..++-.||++.-+
T Consensus       249 AIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf  326 (459)
T KOG4340|consen  249 AIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYF  326 (459)
T ss_pred             hhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHH
Confidence            2345677888888777777532 23345566655433222 344555555555555442 23567888888888888888


Q ss_pred             HHHHHHHHHHHHCCC-CCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHH
Q 014507          327 QKAYTAFQNMRKAGL-EPSDKCVALILSACE-KENQLNRALEFLIDLER  373 (423)
Q Consensus       327 ~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~  373 (423)
                      +-|.+++.+=...-. -.+...|+. +.++. -.-..+++.+-++.+.+
T Consensus       327 ~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La~  374 (459)
T KOG4340|consen  327 DLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLAG  374 (459)
T ss_pred             hHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHHH
Confidence            888887765332211 123334443 33333 34456666666665543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.49  E-value=6.2e-05  Score=63.07  Aligned_cols=119  Identities=13%  Similarity=0.137  Sum_probs=76.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhCCC--HHHH
Q 014507          218 AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRG-YSMNGN--SEGA  294 (423)
Q Consensus       218 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a  294 (423)
                      .++.+++...+++..+.. +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            455566666666655554 446667777777777777777777777777665543 55566666654 355555  4677


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          295 QRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA  339 (423)
Q Consensus       295 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  339 (423)
                      .+++++..+.+ +-+...+..+...+.+.|++++|...|+++.+.
T Consensus       130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            77777776653 225566666677777777777777777777664

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.48  E-value=0.00011  Score=61.94  Aligned_cols=154  Identities=11%  Similarity=0.101  Sum_probs=65.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507          211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN  290 (423)
Q Consensus       211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  290 (423)
                      +-..+...|+-+....+..+..... ..|.......+....+.|++..|...+++..... ++|...|+.+--+|.+.|+
T Consensus        72 ~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          72 LATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccC
Confidence            3344444444444444443322211 1233333334444444555555555554444432 2244445555445555555


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          291 SEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFL  368 (423)
Q Consensus       291 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  368 (423)
                      .+.|..-|.+..+-- .-+...+|.+.-.+.-.|+.+.|..++......+ .-|...-..+.......|+++.|..+.
T Consensus       150 ~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         150 FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            555554444444321 1123334444444444445555555444444332 112333334444444444544444444

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.48  E-value=0.00051  Score=66.28  Aligned_cols=124  Identities=19%  Similarity=0.136  Sum_probs=91.8

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 014507          280 ALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKE  358 (423)
Q Consensus       280 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~  358 (423)
                      .....+.+.+..++|...+.+..... .-....|......+...|.+++|.+.|.....  +.|+ ......+...+.+.
T Consensus       655 laa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~  731 (799)
T KOG4162|consen  655 LAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLEL  731 (799)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHh
Confidence            34444555555666665555554321 22344555555667778889999998888776  4565 67888999999999


Q ss_pred             CCHHHHHH--HHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          359 NQLNRALE--FLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       359 g~~~~a~~--~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      |+..-+..  ++.++.+.+ +.+...|..+...+.+.|+.++|.+.|..-.
T Consensus       732 G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~  781 (799)
T KOG4162|consen  732 GSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL  781 (799)
T ss_pred             CCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence            98887777  999999874 4578999999999999999999999998643

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.47  E-value=3.3e-05  Score=65.00  Aligned_cols=158  Identities=15%  Similarity=0.093  Sum_probs=95.4

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507          174 TKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA  253 (423)
Q Consensus       174 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  253 (423)
                      ...-..+.-.|+-+....+........ +-|.......+....+.|++.+|...|++..... ++|..+|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHc
Confidence            344455555566666555555543331 2244555556666666777777777776666543 55666777777777777


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          254 GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAF  333 (423)
Q Consensus       254 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~  333 (423)
                      |++++|..-|.+..+.... +...++.+.-.+.-.|+.+.|..++......+ .-|...-..+..+....|++++|.++.
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHHHhhc
Confidence            7777777666666664332 44566666666666677777777766666543 225555556666666667777766654


Q ss_pred             HH
Q 014507          334 QN  335 (423)
Q Consensus       334 ~~  335 (423)
                      ..
T Consensus       226 ~~  227 (257)
T COG5010         226 VQ  227 (257)
T ss_pred             cc
Confidence            43

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.46  E-value=0.0006  Score=71.75  Aligned_cols=294  Identities=14%  Similarity=-0.020  Sum_probs=187.1

Q ss_pred             CCCCCHHHHHHHHHHh---cC-------CChh--hHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCH----HHHHHHHH
Q 014507          115 PETGNLSDLLAAWVRF---MK-------PRRA--DWLAVLKQLKLMEHPLYLQVAELALLEESFEANI----RDYTKIIH  178 (423)
Q Consensus       115 ~~~g~~~~a~~~~~~~---~~-------p~~~--~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~li~  178 (423)
                      ...|+++++...+...   ..       |...  ....+-..+...|+++.+....+.........+.    ...+.+..
T Consensus       420 ~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~  499 (903)
T PRK04841        420 QSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGE  499 (903)
T ss_pred             HHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHH
Confidence            4567888888777654   11       1111  1111223445688999998888776653222221    23455666


Q ss_pred             HHHccCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHH
Q 014507          179 GYGKKMQIQNAENTLLAMKRR----GFI-CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL----GEP--L-DKRSYGSM  246 (423)
Q Consensus       179 ~~~~~~~~~~a~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~-~~~~~~~l  246 (423)
                      .+...|++++|...+++....    |.. ....++..+...+...|++++|...+++....    |..  + ....+..+
T Consensus       500 ~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l  579 (903)
T PRK04841        500 VHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIR  579 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHH
Confidence            778899999999999887643    111 11234556677788999999999998887652    211  1 22345556


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhC--CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHH-----HHH
Q 014507          247 VMAYVRAGMLDRGEVLLREMDAQ--EVYV--GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGI-TPDARMC-----ALL  316 (423)
Q Consensus       247 i~~~~~~~~~~~a~~~~~~m~~~--~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~-----~~l  316 (423)
                      ...+...|++++|...+++....  ...+  ....+..+...+...|+.++|.+.++......- ......+     ...
T Consensus       580 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~  659 (903)
T PRK04841        580 AQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVR  659 (903)
T ss_pred             HHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHH
Confidence            66677789999999999887553  1112  233455566778889999999999988754210 1111111     112


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC-HHHHHHHHH
Q 014507          317 INAYQMAGQSQKAYTAFQNMRKAGLEPS---DKCVALILSACEKENQLNRALEFLIDLERD----GFMVG-KEASCTLAA  388 (423)
Q Consensus       317 i~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~~~l~~  388 (423)
                      +..+...|+.+.|.+++...........   ...+..+..++...|+.++|...+++....    |..++ ..+...+..
T Consensus       660 ~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~  739 (903)
T PRK04841        660 LIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQ  739 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence            3445668899999999877654221111   112445667788899999999999987653    33332 345677788


Q ss_pred             HHHHcCCHHHHHHHHHHhcc
Q 014507          389 WFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       389 ~~~~~g~~~~A~~~~~~m~~  408 (423)
                      ++.+.|+.++|.+.+.+..+
T Consensus       740 a~~~~G~~~~A~~~L~~Al~  759 (903)
T PRK04841        740 LYWQQGRKSEAQRVLLEALK  759 (903)
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            88999999999888877643

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.45  E-value=2e-05  Score=75.13  Aligned_cols=215  Identities=14%  Similarity=-0.007  Sum_probs=126.5

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507          173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR  252 (423)
Q Consensus       173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  252 (423)
                      =..+...+...|-...|..+|+++.         .|...|..|...|+.++|..+..+-.++  +||...|..+.+....
T Consensus       401 q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~d  469 (777)
T KOG1128|consen  401 QRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLHD  469 (777)
T ss_pred             HHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhccC
Confidence            3345555666666667766666543         3455666677777777777776666652  5666666666665555


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507          253 AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTA  332 (423)
Q Consensus       253 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~  332 (423)
                      .--+++|.++.+.....       .-..+.....+.++++++.+.|+.-.+.+ ..-..+|-..-.+..+.+++..|.+.
T Consensus       470 ~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~a  541 (777)
T KOG1128|consen  470 PSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKA  541 (777)
T ss_pred             hHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHH
Confidence            44555565555543322       11111112233566666666666544432 22455666666666666777777776


Q ss_pred             HHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          333 FQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       333 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      |..-..  ..|| ...|+.+-.+|.+.++-.+|...+++..+.+ .-+..+|...+....+.|.+++|.+.+.+|.+-
T Consensus       542 F~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  542 FHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            666654  3454 5567777777777777777777777766655 334445555555566677777777776665443

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.44  E-value=0.00017  Score=71.62  Aligned_cols=134  Identities=11%  Similarity=0.028  Sum_probs=87.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 014507          201 FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD-KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYK  279 (423)
Q Consensus       201 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  279 (423)
                      ...+...+-.|.....+.|.+++|..+++...+.  .|| ......+...+.+.+++++|...+++....... +.....
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~  158 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREIL  158 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHH
Confidence            3345666666777777777777777777777665  333 445666666667777777777777777665544 555666


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          280 ALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       280 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      .+..++.+.|++++|.++|+++...+ .-+..++..+..++-..|+.++|...|+...+
T Consensus       159 ~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~  216 (694)
T PRK15179        159 LEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD  216 (694)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            66666777777777777777776532 22356666666666777777777777776665

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.44  E-value=7.8e-05  Score=62.51  Aligned_cols=127  Identities=10%  Similarity=0.070  Sum_probs=95.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCC--hhHH
Q 014507          183 KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY-VRAGM--LDRG  259 (423)
Q Consensus       183 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~-~~~~~--~~~a  259 (423)
                      .++.+++...++...+.... |...|..+...|...|++++|...|++..+.. +-+...+..+..++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            56667777777777666433 78888888888888888888888888888765 34667777777764 56666  4888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014507          260 EVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMC  313 (423)
Q Consensus       260 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  313 (423)
                      .+++++..+.+.. +..++..+...+.+.|++++|...|+++.+.. .|+..-+
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~  181 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRT  181 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHH
Confidence            8888888887665 67788888888888888888888888887653 4444433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=2.5e-05  Score=72.59  Aligned_cols=221  Identities=13%  Similarity=0.108  Sum_probs=169.0

Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 014507          178 HGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD  257 (423)
Q Consensus       178 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~  257 (423)
                      .-+.+.|++.+|.-.|+...+..+. +...|.-|.......++-..|+..+++..+.. +-+....-.|.-.|...|.-.
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHH
Confidence            3456889999999999999888555 78899999999999999999999999998864 346778888888999999999


Q ss_pred             HHHHHHHHHHhCCCC--------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507          258 RGEVLLREMDAQEVY--------VGSEVYKALLRGYSMNGNSEGAQRVFEAIQF-AGITPDARMCALLINAYQMAGQSQK  328 (423)
Q Consensus       258 ~a~~~~~~m~~~~~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~  328 (423)
                      .|...++.-.....+        ++...-..  ..+.....+....++|-++.. .+-.+|......|--.|--.|++++
T Consensus       371 ~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            999999887654321        00000000  112222234455555555544 4545788888888888999999999


Q ss_pred             HHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          329 AYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLERDGFMVG-KEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       329 a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      |.+.|+....  ++| |..+|+.|...++...+.++|+..|++.++  +.|+ +.+...|.-.|...|.+++|.+.|-+.
T Consensus       449 aiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A  524 (579)
T KOG1125|consen  449 AVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA  524 (579)
T ss_pred             HHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence            9999999987  567 578899999999999999999999999998  4565 444445777899999999999988653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.41  E-value=0.00053  Score=60.01  Aligned_cols=283  Identities=12%  Similarity=-0.003  Sum_probs=192.6

Q ss_pred             hHHHHHHhcCChhhhhhhHHHHHHHH---hccCCCCCHHHHHHHHHHh--cCCChhhHH-HHHHHHHhcCCchHHHHHHH
Q 014507           86 EEQKQAISQFPRKMTKRCKAFVKQII---CVSPETGNLSDLLAAWVRF--MKPRRADWL-AVLKQLKLMEHPLYLQVAEL  159 (423)
Q Consensus        86 ~~~~~~a~~~~~~m~~~~~~~~~~ll---~~~~~~g~~~~a~~~~~~~--~~p~~~~~~-~ll~~~~~~~~~~~a~~~~~  159 (423)
                      +++...|..-|....+.|...|-++.   ..|...|+...|+.=+.+.  .+||-..-. .-...+.+.|..+.|..-|.
T Consensus        51 ~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~  130 (504)
T KOG0624|consen   51 RGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFD  130 (504)
T ss_pred             hhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHH
Confidence            44555555555656565555555543   3666777777777777776  566653322 12234566788888888887


Q ss_pred             HHhhcccCCC------------HHH--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507          160 ALLEESFEAN------------IRD--YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAE  225 (423)
Q Consensus       160 ~~~~~~~~~~------------~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  225 (423)
                      .+++....-+            ...  ....+..+.-.|+...|+.....+.+..+- |...|..-..+|...|++..|+
T Consensus       131 ~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI  209 (504)
T KOG0624|consen  131 QVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAI  209 (504)
T ss_pred             HHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHH
Confidence            7776643211            111  223445566789999999999999887443 7888888899999999999998


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH----HHH-------H--HHHHHhCCCHH
Q 014507          226 ETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEV----YKA-------L--LRGYSMNGNSE  292 (423)
Q Consensus       226 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~-------l--i~~~~~~g~~~  292 (423)
                      .=++...+.. .-+..++--+-..+...|+.+.++...++..+.+  ||...    |..       |  +......+++.
T Consensus       210 ~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t  286 (504)
T KOG0624|consen  210 HDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECLKLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWT  286 (504)
T ss_pred             HHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence            8888777654 3355566667777888999999999999888854  44322    211       1  23345567788


Q ss_pred             HHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          293 GAQRVFEAIQFAGITPDA---RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFL  368 (423)
Q Consensus       293 ~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~  368 (423)
                      ++.+-.+...+....-..   ..+..+-.++...|++.+|+....+..+  +.|| ..++---..+|.-..+++.|+.=|
T Consensus       287 ~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dy  364 (504)
T KOG0624|consen  287 ECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDY  364 (504)
T ss_pred             HHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            888888877765322122   3345566778888999999999998876  5565 677777777787777888888877


Q ss_pred             HHHHHC
Q 014507          369 IDLERD  374 (423)
Q Consensus       369 ~~m~~~  374 (423)
                      +...+.
T Consensus       365 e~A~e~  370 (504)
T KOG0624|consen  365 EKALEL  370 (504)
T ss_pred             HHHHhc
Confidence            777654

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.40  E-value=0.00032  Score=65.62  Aligned_cols=60  Identities=10%  Similarity=-0.067  Sum_probs=40.7

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcC-------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 014507          176 IIHGYGKKMQIQNAENTLLAMKRRG-------------FICDQV-TLTVMVVMYSKAGNLKMAEETFEEIKLLG  235 (423)
Q Consensus       176 li~~~~~~~~~~~a~~~~~~m~~~g-------------~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g  235 (423)
                      ....+...|++.+|+++++...+.+             +.-+.. .-..+.-.+-..|+.++|..+|....+..
T Consensus       181 ~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~  254 (652)
T KOG2376|consen  181 TACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN  254 (652)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence            3455667899999999999883221             110111 12345566778899999999999998875

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.39  E-value=5e-05  Score=60.15  Aligned_cols=90  Identities=11%  Similarity=-0.007  Sum_probs=37.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507          211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN  290 (423)
Q Consensus       211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  290 (423)
                      +...+...|++++|...|+...... +.+...|..+..++.+.|++++|...|++..+.+.. +...+..+..++.+.|+
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcCC
Confidence            3334444444444444444444332 223344444444444444444444444444443221 33344444444444444


Q ss_pred             HHHHHHHHHHHH
Q 014507          291 SEGAQRVFEAIQ  302 (423)
Q Consensus       291 ~~~a~~~~~~m~  302 (423)
                      .++|...|+...
T Consensus       108 ~~eAi~~~~~Al  119 (144)
T PRK15359        108 PGLAREAFQTAI  119 (144)
T ss_pred             HHHHHHHHHHHH
Confidence            444444444443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.38  E-value=0.0023  Score=60.71  Aligned_cols=302  Identities=12%  Similarity=0.086  Sum_probs=199.4

Q ss_pred             hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHH
Q 014507          102 RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIH  178 (423)
Q Consensus       102 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  178 (423)
                      ++-+.|+.+--.+....++++|+..|...  ..||. ..+.-+--.=++.++.+........+++.. +-....|..+..
T Consensus        73 ~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Av  151 (700)
T KOG1156|consen   73 KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAV  151 (700)
T ss_pred             ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHH
Confidence            34477999988999999999999999987  55665 445544444467788888777777776654 345567888888


Q ss_pred             HHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH------HHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH
Q 014507          179 GYGKKMQIQNAENTLLAMKRRG-FICDQVTLTVMVVM------YSKAGNLKMAEETFEEIKLLGEPLDKRSY-GSMVMAY  250 (423)
Q Consensus       179 ~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~------~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~  250 (423)
                      ++.-.|+...|..++++..+.. -.|+...|......      ....|..+.|.+.+..-...  ..|...+ .+-...+
T Consensus       152 s~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~--i~Dkla~~e~ka~l~  229 (700)
T KOG1156|consen  152 AQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ--IVDKLAFEETKADLL  229 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH--HHHHHHHhhhHHHHH
Confidence            9999999999999999998764 35677777654433      45678888888888766543  2344443 3556677


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH-HHHHhCCCHHHHH-HHHHHHHHC---CCCC-----C---HHHHHHHH
Q 014507          251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALL-RGYSMNGNSEGAQ-RVFEAIQFA---GITP-----D---ARMCALLI  317 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~g~~~~a~-~~~~~m~~~---g~~p-----~---~~~~~~li  317 (423)
                      .+.+++++|..++..+...+  ||...|.-.. .++.+-.+.-++. .+|....+.   ...|     +   ...+...+
T Consensus       230 ~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~v  307 (700)
T KOG1156|consen  230 MKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIV  307 (700)
T ss_pred             HHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHH
Confidence            88999999999999999975  5666655554 4444444444444 677665432   1011     0   01111111


Q ss_pred             HHHH----HcC-------------CHHHHHHHHHHHH----H----CC----------CCCCHH--HHHHHHHHHHHcCC
Q 014507          318 NAYQ----MAG-------------QSQKAYTAFQNMR----K----AG----------LEPSDK--CVALILSACEKENQ  360 (423)
Q Consensus       318 ~~~~----~~g-------------~~~~a~~~~~~m~----~----~~----------~~p~~~--~~~~li~~~~~~g~  360 (423)
                      +-|.    +.|             +..++- ++++..    .    .|          -+|+..  |+..++..+-+.|+
T Consensus       308 dkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~  386 (700)
T KOG1156|consen  308 DKYLRPLLSKGVPSVFKDLRSLYKDPEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGD  386 (700)
T ss_pred             HHHHHHHhhcCCCchhhhhHHHHhchhHhH-HHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHccc
Confidence            1111    111             111111 222221    1    11          134433  45667778889999


Q ss_pred             HHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507          361 LNRALEFLIDLERDGFMVG-KEASCTLAAWFKRLGVVEEVEHVLREYGLRET  411 (423)
Q Consensus       361 ~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  411 (423)
                      ++.|..+++.....  .|+ ++.|..=.+.+...|+.++|..++++-.+-+.
T Consensus       387 ~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~  436 (700)
T KOG1156|consen  387 YEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT  436 (700)
T ss_pred             HHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc
Confidence            99999999998875  454 56676777899999999999999998766544

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.36  E-value=0.00054  Score=68.23  Aligned_cols=204  Identities=15%  Similarity=0.070  Sum_probs=147.3

Q ss_pred             CCCHHHHHHHHHHHHccCCHHHH-HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507          167 EANIRDYTKIIHGYGKKMQIQNA-ENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS  245 (423)
Q Consensus       167 ~~~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~  245 (423)
                      ..++.....+=.+.+.-|..++| .+++.+..+.            +..........+++.-....... ...++..+..
T Consensus        25 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~   91 (694)
T PRK15179         25 ASGPTILDLLEAALAEPGESEEAGRELLQQARQV------------LERHAAVHKPAAALPELLDYVRR-YPHTELFQVL   91 (694)
T ss_pred             CCCcHHHhHHHHHhcCcccchhHHHHHHHHHHHH------------HHHhhhhcchHhhHHHHHHHHHh-ccccHHHHHH
Confidence            33445555555666677777666 3444444432            22222222223333222222222 3557889999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507          246 MVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ  325 (423)
Q Consensus       246 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  325 (423)
                      |.....+.|..++|..+++...+.... +......+...+.+.+++++|+...+...... +-+....+.+..++.+.|+
T Consensus        92 La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a~~l~~~g~  169 (694)
T PRK15179         92 VARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEAKSWDEIGQ  169 (694)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHHHhcc
Confidence            999999999999999999999986543 56678888999999999999999999999763 2356677888889999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 014507          326 SQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLA  387 (423)
Q Consensus       326 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~  387 (423)
                      +++|.++|++....+ .-+..++..+..++...|+.++|...|++..+. ..+...-|+.++
T Consensus       170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~  229 (694)
T PRK15179        170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL  229 (694)
T ss_pred             hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence            999999999999843 223788999999999999999999999999876 334445554433

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.36  E-value=0.0021  Score=60.94  Aligned_cols=224  Identities=11%  Similarity=0.079  Sum_probs=105.8

Q ss_pred             HHHHhccCCCCCHHHHHHHHHHhcC----------CChhhHHHHHHHHHhcCCchH---HHHHHHHHhhcccCCCHHHHH
Q 014507          108 KQIICVSPETGNLSDLLAAWVRFMK----------PRRADWLAVLKQLKLMEHPLY---LQVAELALLEESFEANIRDYT  174 (423)
Q Consensus       108 ~~ll~~~~~~g~~~~a~~~~~~~~~----------p~~~~~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~  174 (423)
                      +..|..+++.+++++|-+.+...+.          .+...|..+-...++..+.-.   ...+.+.++..-...=-..|+
T Consensus       173 eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~  252 (835)
T KOG2047|consen  173 EEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWC  252 (835)
T ss_pred             HHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHH
Confidence            3445555566666666666655422          222334444333333322222   222222222221111125688


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----------------------CHHHHHHHHHHHH
Q 014507          175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG----------------------NLKMAEETFEEIK  232 (423)
Q Consensus       175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g----------------------~~~~A~~~~~~m~  232 (423)
                      +|...|.+.|++++|..++++....-  .++.-|+.+.++|++-.                      +++-.+.-|+.+.
T Consensus       253 SLAdYYIr~g~~ekarDvyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm  330 (835)
T KOG2047|consen  253 SLADYYIRSGLFEKARDVYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLM  330 (835)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHH
Confidence            88888999999999999988876652  24444555555554321                      1222333343333


Q ss_pred             HcC-----------CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC------CHHHHHHHHHHHHhCCCHHHHH
Q 014507          233 LLG-----------EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV------GSEVYKALLRGYSMNGNSEGAQ  295 (423)
Q Consensus       233 ~~g-----------~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p------~~~~~~~li~~~~~~g~~~~a~  295 (423)
                      ..+           -+.++..|..-...  ..|+..+...+|.+..+. +.|      -...|..+.+.|-..|+++.|.
T Consensus       331 ~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aR  407 (835)
T KOG2047|consen  331 NRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDAR  407 (835)
T ss_pred             hccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHH
Confidence            221           01122223222221  133444445555555432 111      1235666666666677777777


Q ss_pred             HHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          296 RVFEAIQFAGITPD---ARMCALLINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       296 ~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m  336 (423)
                      .+|++..+-..+.-   ..+|..-...-.++.+++.|+++.++.
T Consensus       408 vifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A  451 (835)
T KOG2047|consen  408 VIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA  451 (835)
T ss_pred             HHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence            77766654322111   223333334444555555666555544

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.33  E-value=5.1e-05  Score=60.10  Aligned_cols=97  Identities=4%  Similarity=-0.162  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV  251 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  251 (423)
                      .+......+...|++++|...|+........ +...|..+...+.+.|++++|...|++..+.. +.+..++..+..++.
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~  103 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLK  103 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence            4555677778888888888888888777433 67788888888888888888888888888764 457778888888888


Q ss_pred             HcCChhHHHHHHHHHHhCC
Q 014507          252 RAGMLDRGEVLLREMDAQE  270 (423)
Q Consensus       252 ~~~~~~~a~~~~~~m~~~~  270 (423)
                      ..|++++|...|+...+..
T Consensus       104 ~~g~~~eAi~~~~~Al~~~  122 (144)
T PRK15359        104 MMGEPGLAREAFQTAIKMS  122 (144)
T ss_pred             HcCCHHHHHHHHHHHHHhC
Confidence            8888888888888887754

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.31  E-value=0.0027  Score=66.82  Aligned_cols=266  Identities=11%  Similarity=-0.040  Sum_probs=158.8

Q ss_pred             HHHHhcCCchHHHHHHHHHhhccc------CCC--HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHH
Q 014507          143 KQLKLMEHPLYLQVAELALLEESF------EAN--IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ----VTLTV  210 (423)
Q Consensus       143 ~~~~~~~~~~~a~~~~~~~~~~~~------~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~  210 (423)
                      ..+...++.+++..........--      .+.  ......+...+...|++++|...+++..+.-...+.    ...+.
T Consensus       417 ~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~  496 (903)
T PRK04841        417 WLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSV  496 (903)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence            344557777777666665433210      111  112222334456788999999988887653111121    23455


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHHcCChhHHHHHHHHHHh----CCCC--C-CHHHH
Q 014507          211 MVVMYSKAGNLKMAEETFEEIKLLGE---PL--DKRSYGSMVMAYVRAGMLDRGEVLLREMDA----QEVY--V-GSEVY  278 (423)
Q Consensus       211 li~~~~~~g~~~~A~~~~~~m~~~g~---~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~--p-~~~~~  278 (423)
                      +...+...|++++|...+.+.....-   .+  ...++..+...+...|+++.|...+++...    .+..  + ....+
T Consensus       497 lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  576 (903)
T PRK04841        497 LGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLL  576 (903)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHH
Confidence            66667788999999888888764211   11  123455566677888999999888877654    2221  1 22344


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHC--CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHH--HH--
Q 014507          279 KALLRGYSMNGNSEGAQRVFEAIQFA--GITP--DARMCALLINAYQMAGQSQKAYTAFQNMRKA--GLEPSDK--CV--  348 (423)
Q Consensus       279 ~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~--~~--  348 (423)
                      ..+...+...|++++|...+++....  ...+  ....+..+...+...|++++|.+.++.....  .......  ..  
T Consensus       577 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~  656 (903)
T PRK04841        577 RIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANAD  656 (903)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHH
Confidence            55566677789999998888876542  1112  2334555666778889999998888877541  1111110  10  


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC---HHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          349 ALILSACEKENQLNRALEFLIDLERDGFMVG---KEASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       349 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      ...+..+...|+.+.|..++...........   ...+..+..++...|++++|...+++...
T Consensus       657 ~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~  719 (903)
T PRK04841        657 KVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNE  719 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            1112334557888888888776544211111   11134677778889999999999887654

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.30  E-value=1.4e-06  Score=50.27  Aligned_cols=33  Identities=30%  Similarity=0.515  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 014507          312 MCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS  344 (423)
Q Consensus       312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  344 (423)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            466666666666666666666666666666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.30  E-value=0.00036  Score=67.70  Aligned_cols=144  Identities=17%  Similarity=0.170  Sum_probs=73.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------cC---------C
Q 014507          176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL----------LG---------E  236 (423)
Q Consensus       176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~----------~g---------~  236 (423)
                      +=..|-..|.|++|.++-+.-.+..+   ..||..-...+-..++.+.|++.|++...          ..         -
T Consensus       832 lNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~  908 (1416)
T KOG3617|consen  832 LNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRR  908 (1416)
T ss_pred             HHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHh
Confidence            33444455666666655544322222   22444444444455566666666554311          00         0


Q ss_pred             CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014507          237 PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALL  316 (423)
Q Consensus       237 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  316 (423)
                      ..|...|.-...-.-..|+.|.|+.+|...++         |.+++...|-.|+.++|-++-++-      .|......+
T Consensus       909 ~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhl  973 (1416)
T KOG3617|consen  909 KRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHL  973 (1416)
T ss_pred             ccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHH
Confidence            11222233233333344555555555544332         344455555566666666555432      255566677


Q ss_pred             HHHHHHcCCHHHHHHHHHHHH
Q 014507          317 INAYQMAGQSQKAYTAFQNMR  337 (423)
Q Consensus       317 i~~~~~~g~~~~a~~~~~~m~  337 (423)
                      .+.|-+.|++.+|..+|.+..
T Consensus       974 aR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  974 ARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             HHHhhhhHHHHHHHHHHHHHH
Confidence            888888888888888887664

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.29  E-value=0.00047  Score=60.58  Aligned_cols=284  Identities=8%  Similarity=0.041  Sum_probs=155.5

Q ss_pred             CCCHHHHHHHHHHhcC--CChhhHHHHHHH-HHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHcc--CCHHHHH-
Q 014507          117 TGNLSDLLAAWVRFMK--PRRADWLAVLKQ-LKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKK--MQIQNAE-  190 (423)
Q Consensus       117 ~g~~~~a~~~~~~~~~--p~~~~~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~--~~~~~a~-  190 (423)
                      .-.+.+|+++|.+.+.  |+-...|.-+.. |.+..-++-+..+....++. ++-++..-|.......+.  |+..+++ 
T Consensus       164 R~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~  242 (557)
T KOG3785|consen  164 RMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEK  242 (557)
T ss_pred             HHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence            3467889999988854  333455554443 45566666666666554443 333334444443333332  2221111 


Q ss_pred             -HH----------HHHHHHcC------------CCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 014507          191 -NT----------LLAMKRRG------------FIC-----DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRS  242 (423)
Q Consensus       191 -~~----------~~~m~~~g------------~~p-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~  242 (423)
                       ++          .+.+.+.+            +-|     -+..--.|+-.|.+.++..+|..+.+++.    +.++.-
T Consensus       243 k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~----PttP~E  318 (557)
T KOG3785|consen  243 KELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLD----PTTPYE  318 (557)
T ss_pred             HHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcC----CCChHH
Confidence             11          11111111            011     12233446667788999999988887764    223333


Q ss_pred             HHHHHHHHHHcC-------ChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507          243 YGSMVMAYVRAG-------MLDRGEVLLREMDAQEVYVGSE-VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA  314 (423)
Q Consensus       243 ~~~li~~~~~~~-------~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  314 (423)
                      |-.-.-..+..|       ...-|.+.|+..-+.+..-|+. --.++.+.+.-..++++++-.++.+...=...|...+ 
T Consensus       319 yilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-  397 (557)
T KOG3785|consen  319 YILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-  397 (557)
T ss_pred             HHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-
Confidence            322222222323       3455677776666555443321 2334445555556777777777777764333344444 


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHH-HHHHHHHHHH
Q 014507          315 LLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA-LILSACEKENQLNRALEFLIDLERDGFMVGKEA-SCTLAAWFKR  392 (423)
Q Consensus       315 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~-~~~l~~~~~~  392 (423)
                      .+.++++..|.+.+|+++|-......++ |..+|- .|.++|.+.+.++.|.+++-++.   -+.+..+ ...+..-|.+
T Consensus       398 N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk  473 (557)
T KOG3785|consen  398 NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYK  473 (557)
T ss_pred             HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHH
Confidence            4577888888888888888776654433 344554 44556777888887776664432   2222222 3445566778


Q ss_pred             cCCHHHHHHHHHHhcccC
Q 014507          393 LGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       393 ~g~~~~A~~~~~~m~~~~  410 (423)
                      ++.+--|-+.|+.+...+
T Consensus       474 ~~eFyyaaKAFd~lE~lD  491 (557)
T KOG3785|consen  474 ANEFYYAAKAFDELEILD  491 (557)
T ss_pred             HHHHHHHHHhhhHHHccC
Confidence            888888888888776543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.28  E-value=0.00055  Score=69.06  Aligned_cols=218  Identities=8%  Similarity=0.051  Sum_probs=132.4

Q ss_pred             hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChhhHHHHH-HHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHH
Q 014507          102 RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRADWLAVL-KQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIH  178 (423)
Q Consensus       102 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~~ll-~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  178 (423)
                      .+...|..|+..+...+++++|.++.+..  ..|+...+-..+ ..+.+.++...+..+                 .++.
T Consensus        29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~   91 (906)
T PRK14720         29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------NLID   91 (906)
T ss_pred             chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------hhhh
Confidence            34567888999999999999999999876  456664433322 233344443333222                 4555


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhH
Q 014507          179 GYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDR  258 (423)
Q Consensus       179 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~  258 (423)
                      ......++..+..+...|...+-  +...+-.+..+|-+.|+.++|..+|+++.+.. +-|+.+.|.+...|... ++++
T Consensus        92 ~~~~~~~~~~ve~~~~~i~~~~~--~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~K  167 (906)
T PRK14720         92 SFSQNLKWAIVEHICDKILLYGE--NKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEK  167 (906)
T ss_pred             hcccccchhHHHHHHHHHHhhhh--hhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHH
Confidence            55566666555555555555422  44566677777778888888888888887766 44677777777777777 7777


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC-------------------CCCCCHHHHHHHHHH
Q 014507          259 GEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA-------------------GITPDARMCALLINA  319 (423)
Q Consensus       259 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------------g~~p~~~~~~~li~~  319 (423)
                      |.+++.+....               +...+++.++.++|.++...                   |...-..++--+-..
T Consensus       168 A~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~  232 (906)
T PRK14720        168 AITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEP  232 (906)
T ss_pred             HHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHH
Confidence            77777776654               44445555566666555543                   112223334444455


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507          320 YQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACE  356 (423)
Q Consensus       320 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  356 (423)
                      |...++|+++..+++...+.. +-|.....-++..|.
T Consensus       233 y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        233 YKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             HhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            556666666666666666532 123444445554444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=0.0012  Score=55.99  Aligned_cols=243  Identities=9%  Similarity=0.067  Sum_probs=149.1

Q ss_pred             CCCHHHHHHHHHHh-cC-CChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHH-HHHHH
Q 014507          117 TGNLSDLLAAWVRF-MK-PRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQN-AENTL  193 (423)
Q Consensus       117 ~g~~~~a~~~~~~~-~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~-a~~~~  193 (423)
                      .|++..++..-... .. .+...-.-+-++|...|.......-   . ..|-.|.....-.+......-++-++ ..++.
T Consensus        21 ~Gnyq~~ine~~~~~~~~~~~e~d~y~~raylAlg~~~~~~~e---I-~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~   96 (299)
T KOG3081|consen   21 LGNYQQCINEAEKFSSSKTDVELDVYMYRAYLALGQYQIVISE---I-KEGKATPLQAVRLLAEYLELESNKKSILASLY   96 (299)
T ss_pred             hhHHHHHHHHHHhhccccchhHHHHHHHHHHHHcccccccccc---c-ccccCChHHHHHHHHHHhhCcchhHHHHHHHH
Confidence            45666665554443 22 3333334455566666665443211   1 11223333333333333333444333 33455


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 014507          194 LAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV  273 (423)
Q Consensus       194 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  273 (423)
                      +.+......-+......-...|+..|++++|++......      +......=...+.+..+.|.|.+.+++|.+..   
T Consensus        97 E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~id---  167 (299)
T KOG3081|consen   97 ELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQID---  167 (299)
T ss_pred             HHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc---
Confidence            555555444343444445567888899999988887622      23333333344567778899999999998853   


Q ss_pred             CHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507          274 GSEVYKALLRGYSM----NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA  349 (423)
Q Consensus       274 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  349 (423)
                      +..|.+.|.+++.+    .+.+.+|.-+|++|.++ ..|+..+.+...-++...|++++|..++++..... .-++.|..
T Consensus       168 ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd-~~dpetL~  245 (299)
T KOG3081|consen  168 EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD-AKDPETLA  245 (299)
T ss_pred             hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-CCCHHHHH
Confidence            45566666665554    46788999999999864 37888888999999999999999999999988754 33567777


Q ss_pred             HHHHHHHHcCCH-HHHHHHHHHHHHC
Q 014507          350 LILSACEKENQL-NRALEFLIDLERD  374 (423)
Q Consensus       350 ~li~~~~~~g~~-~~a~~~~~~m~~~  374 (423)
                      .++-.-...|.. +-..+.+..++..
T Consensus       246 Nliv~a~~~Gkd~~~~~r~l~QLk~~  271 (299)
T KOG3081|consen  246 NLIVLALHLGKDAEVTERNLSQLKLS  271 (299)
T ss_pred             HHHHHHHHhCCChHHHHHHHHHHHhc
Confidence            777766666655 4455566666553

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=0.0004  Score=58.67  Aligned_cols=173  Identities=13%  Similarity=0.100  Sum_probs=118.4

Q ss_pred             HHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          155 QVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      ..+.+.+......-+......-...|...|++++|++........    +....  =...+.+..+++.|.+.+++|.+.
T Consensus        93 ~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~~l----E~~Al--~VqI~lk~~r~d~A~~~lk~mq~i  166 (299)
T KOG3081|consen   93 ASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGENL----EAAAL--NVQILLKMHRFDLAEKELKKMQQI  166 (299)
T ss_pred             HHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccchH----HHHHH--HHHHHHHHHHHHHHHHHHHHHHcc
Confidence            344454555544445444455556788999999999888772222    33333  345556778899999999999874


Q ss_pred             CCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH
Q 014507          235 GEPLDKRSYGSMVMAYVR----AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDA  310 (423)
Q Consensus       235 g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~  310 (423)
                         -+..|.+-|..++.+    .++..+|.-+|++|-+. ..|+..+.+-...++...|++++|+.++++...+.- .+.
T Consensus       167 ---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~-~dp  241 (299)
T KOG3081|consen  167 ---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA-KDP  241 (299)
T ss_pred             ---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC-CCH
Confidence               266777777777764    35688899999999875 457888889999999999999999999999887642 355


Q ss_pred             HHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 014507          311 RMCALLINAYQMAGQS-QKAYTAFQNMRK  338 (423)
Q Consensus       311 ~~~~~li~~~~~~g~~-~~a~~~~~~m~~  338 (423)
                      .+...+|-+-...|.. +-..+.+..++.
T Consensus       242 etL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  242 ETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            5555555444444444 444556666655

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.25  E-value=0.00028  Score=71.14  Aligned_cols=219  Identities=11%  Similarity=0.060  Sum_probs=143.3

Q ss_pred             hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          135 RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVM  214 (423)
Q Consensus       135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  214 (423)
                      ...+..|+..+...++++.+..+.+..++..+ -....|-.+...+.+.++...+..+                 .++..
T Consensus        31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P-~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l~~   92 (906)
T PRK14720         31 FKELDDLIDAYKSENLTDEAKDICEEHLKEHK-KSISALYISGILSLSRRPLNDSNLL-----------------NLIDS   92 (906)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC-cceehHHHHHHHHHhhcchhhhhhh-----------------hhhhh
Confidence            35667777777777777777776664444321 1222233333355555554443333                 23333


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 014507          215 YSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGA  294 (423)
Q Consensus       215 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  294 (423)
                      .....++..+..+...|...+  -+...+..+..+|-+.|+.+++..+|+++.+.+.. |..+.|.+...|+.. ++++|
T Consensus        93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA  168 (906)
T PRK14720         93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKA  168 (906)
T ss_pred             cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHH
Confidence            334444544444455555532  34457888999999999999999999999998854 889999999999999 99999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------------------CCCCCHHHHHHHHHHH
Q 014507          295 QRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA-------------------GLEPSDKCVALILSAC  355 (423)
Q Consensus       295 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------------~~~p~~~~~~~li~~~  355 (423)
                      ++++.+....               +...+++..+.++|.++...                   |..--..++..+-..|
T Consensus       169 ~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y  233 (906)
T PRK14720        169 ITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPY  233 (906)
T ss_pred             HHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHH
Confidence            9999988753               34444555555555555442                   2222234455555667


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 014507          356 EKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFK  391 (423)
Q Consensus       356 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~  391 (423)
                      ...++++++..+++.+.+.. +-|.....-++.+|.
T Consensus       234 ~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        234 KALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             hhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            77888999999999998863 346666777888776

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.24  E-value=0.00061  Score=59.88  Aligned_cols=197  Identities=12%  Similarity=0.059  Sum_probs=95.6

Q ss_pred             HHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcC-------CchHHHHHHHHHhhcccCCCHH-HHHHHHHHHH
Q 014507          110 IICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLME-------HPLYLQVAELALLEESFEANIR-DYTKIIHGYG  181 (423)
Q Consensus       110 ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~-~~~~li~~~~  181 (423)
                      ++-.|.+.+++.+|..+..+.-..++.-|..-.-.++..|       ....|++.+..+-+++...|.. --.++..++.
T Consensus       291 L~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fF  370 (557)
T KOG3785|consen  291 LIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFF  370 (557)
T ss_pred             heeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHH
Confidence            4556677788888877776653333322221111112222       1233445554444444443332 2334445555


Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCChhHHH
Q 014507          182 KKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYG-SMVMAYVRAGMLDRGE  260 (423)
Q Consensus       182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~~~~~~a~  260 (423)
                      -..++++++..++.++..=..-|.+.+| +..+++..|++.+|+++|-......++ |..+|. .|.++|.++++++.|.
T Consensus       371 L~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW  448 (557)
T KOG3785|consen  371 LSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAW  448 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHH
Confidence            5556666666666665543333333333 556666666666666666555544333 333333 3445556666666665


Q ss_pred             HHHHHHHhCCCCCCHHHH-HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014507          261 VLLREMDAQEVYVGSEVY-KALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMC  313 (423)
Q Consensus       261 ~~~~~m~~~~~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~  313 (423)
                      .++-++..   +.+..+. ..+.+-|.+++++--|-+-|+.+...  .|+..-|
T Consensus       449 ~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~l--DP~pEnW  497 (557)
T KOG3785|consen  449 DMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEIL--DPTPENW  497 (557)
T ss_pred             HHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence            55433322   1122222 22234455566655555555555543  3444444

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.24  E-value=8.9e-05  Score=58.10  Aligned_cols=88  Identities=17%  Similarity=0.148  Sum_probs=33.4

Q ss_pred             HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507          248 MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQ  327 (423)
Q Consensus       248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  327 (423)
                      ..+...|++++|...++.....+.. +...+..+...+.+.|++++|...++.....+ +.+...+..+..++...|+++
T Consensus        25 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~  102 (135)
T TIGR02552        25 YNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLALGEPE  102 (135)
T ss_pred             HHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHcCCHH
Confidence            3333344444444444443332211 33333333334444444444444444333321 122333333333444444444


Q ss_pred             HHHHHHHHHH
Q 014507          328 KAYTAFQNMR  337 (423)
Q Consensus       328 ~a~~~~~~m~  337 (423)
                      +|...|+...
T Consensus       103 ~A~~~~~~al  112 (135)
T TIGR02552       103 SALKALDLAI  112 (135)
T ss_pred             HHHHHHHHHH
Confidence            4444444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.22  E-value=2.7e-06  Score=48.72  Aligned_cols=32  Identities=28%  Similarity=0.530  Sum_probs=16.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 014507          312 MCALLINAYQMAGQSQKAYTAFQNMRKAGLEP  343 (423)
Q Consensus       312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  343 (423)
                      +|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555444

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.22  E-value=0.0023  Score=53.80  Aligned_cols=84  Identities=21%  Similarity=0.163  Sum_probs=39.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 014507          218 AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRV  297 (423)
Q Consensus       218 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  297 (423)
                      .|++++|+++|+.+.+.. +.|.+++-.-+...-..|+.-+|.+-+.+..+. +..|...|.-+...|...|++++|.-.
T Consensus        99 ~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC  176 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC  176 (289)
T ss_pred             hhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence            344555555555555443 334444444444444444444444444444443 222445555555555555555555555


Q ss_pred             HHHHHH
Q 014507          298 FEAIQF  303 (423)
Q Consensus       298 ~~~m~~  303 (423)
                      ++++.-
T Consensus       177 lEE~ll  182 (289)
T KOG3060|consen  177 LEELLL  182 (289)
T ss_pred             HHHHHH
Confidence            555443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.22  E-value=2.9e-06  Score=48.88  Aligned_cols=33  Identities=30%  Similarity=0.315  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD  239 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~  239 (423)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            455555555555555555555555555555554

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.21  E-value=0.0002  Score=65.97  Aligned_cols=127  Identities=17%  Similarity=0.167  Sum_probs=99.8

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014507          275 SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSA  354 (423)
Q Consensus       275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  354 (423)
                      ......|+..+...++++.|..+++++.+..  |+.  ...+++.+...++-.+|.+++++..+.. +-|...+..-...
T Consensus       169 NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~f  243 (395)
T PF09295_consen  169 NYLVDTLLKYLSLTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEF  243 (395)
T ss_pred             hHHHHHHHHHHhhcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            3455666777777889999999999998763  553  4457788888888889999988888642 3356666767777


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          355 CEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       355 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      |.+.++++.|.++.+++.+. .+-+..+|..|..+|.+.|+++.|+-.++.++
T Consensus       244 Ll~k~~~~lAL~iAk~av~l-sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  244 LLSKKKYELALEIAKKAVEL-SPSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHhcCCHHHHHHHHHHHHHh-CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            88899999999999998885 23346689999999999999999999999887

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.20  E-value=0.00016  Score=69.30  Aligned_cols=195  Identities=16%  Similarity=0.184  Sum_probs=139.9

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507          176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM  255 (423)
Q Consensus       176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~  255 (423)
                      .+.+.....+|.+|+.+++.+.....  -..-|..+.+.|+..|+++.|.++|.+.-         .++-.|..|.+.|+
T Consensus       738 aieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~k  806 (1636)
T KOG3616|consen  738 AIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGK  806 (1636)
T ss_pred             HHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhcccc
Confidence            34556677888999999988887732  23346778888999999999999986532         35667888999999


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          256 LDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQN  335 (423)
Q Consensus       256 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  335 (423)
                      |+.|.++-.+..  |.......|-+-..-.-+.|++.+|+++|-.+.    .|+     ..|..|-+.|..+..+++.++
T Consensus       807 w~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmydk~~~~ddmirlv~k  875 (1636)
T KOG3616|consen  807 WEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYDKHGLDDDMIRLVEK  875 (1636)
T ss_pred             HHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence            999988765543  344456677777777788899999998886665    565     347788888888888887765


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507          336 MRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLR  404 (423)
Q Consensus       336 m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  404 (423)
                      -....   -..|-..+..-+-..|++..|.+-|-+..+         |.+-+++|...+.|++|.++-+
T Consensus       876 ~h~d~---l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~kaavnmyk~s~lw~dayriak  932 (1636)
T KOG3616|consen  876 HHGDH---LHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKAAVNMYKASELWEDAYRIAK  932 (1636)
T ss_pred             hChhh---hhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHHHHHHhhhhhhHHHHHHHHh
Confidence            43211   134556667777788888888877754332         5566777777788888777654

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.19  E-value=3e-06  Score=48.48  Aligned_cols=29  Identities=28%  Similarity=0.395  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 014507          208 LTVMVVMYSKAGNLKMAEETFEEIKLLGE  236 (423)
Q Consensus       208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~  236 (423)
                      |+.+|.+|++.|+++.|.++|++|++.|+
T Consensus         4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv   32 (34)
T PF13812_consen    4 YNALLRACAKAGDPDAALQLFDEMKEQGV   32 (34)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            33344444444444444444444433333

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.18  E-value=0.00018  Score=56.42  Aligned_cols=118  Identities=14%  Similarity=0.015  Sum_probs=87.8

Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507          262 LLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGL  341 (423)
Q Consensus       262 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  341 (423)
                      .+++....... +......+...+...|++++|.+.++.+...+ +.+...|..+...+...|++++|...++...+.+ 
T Consensus         5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-   81 (135)
T TIGR02552         5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-   81 (135)
T ss_pred             hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-
Confidence            44455554322 34556677788888999999999998887754 3477888888888889999999999999887754 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 014507          342 EPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASC  384 (423)
Q Consensus       342 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  384 (423)
                      +.+...+..+...+...|++++|...++...+.  .|+...+.
T Consensus        82 p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~  122 (135)
T TIGR02552        82 PDDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPEYS  122 (135)
T ss_pred             CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccchHH
Confidence            345677777888888999999999999888874  35444433

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.0069  Score=57.05  Aligned_cols=93  Identities=4%  Similarity=-0.145  Sum_probs=49.7

Q ss_pred             hHHHHHHHHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHH--hcCCchHHHHHHHHHhhcccCCCH-HHHHHHHHH
Q 014507          103 CKAFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLK--LMEHPLYLQVAELALLEESFEANI-RDYTKIIHG  179 (423)
Q Consensus       103 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~  179 (423)
                      |...+..-+-+..+.++|++|+.+.+.-...+....-.+=++|+  +.+..++|.....     |..++. .+...-...
T Consensus        45 d~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~L~AQv  119 (652)
T KOG2376|consen   45 DEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLELRAQV  119 (652)
T ss_pred             cHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHHHHHHH
Confidence            44445555566667777777775555422111110000233333  4666666655544     333332 244555566


Q ss_pred             HHccCCHHHHHHHHHHHHHcC
Q 014507          180 YGKKMQIQNAENTLLAMKRRG  200 (423)
Q Consensus       180 ~~~~~~~~~a~~~~~~m~~~g  200 (423)
                      +-+.|++++|..+|+.+.+.+
T Consensus       120 lYrl~~ydealdiY~~L~kn~  140 (652)
T KOG2376|consen  120 LYRLERYDEALDIYQHLAKNN  140 (652)
T ss_pred             HHHHhhHHHHHHHHHHHHhcC
Confidence            667777777777777776653

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.16  E-value=3.7e-05  Score=71.03  Aligned_cols=124  Identities=14%  Similarity=0.117  Sum_probs=97.9

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 014507          200 GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL--GEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEV  277 (423)
Q Consensus       200 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  277 (423)
                      +.+.+......+++.+....+.+.+..++.+....  ....-..|.+++++.|.+.|..+.++.+++.=...|+-||..+
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s  140 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS  140 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence            44557777888888888888888888888888764  2333345667888889988888888888888888888889999


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507          278 YKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMA  323 (423)
Q Consensus       278 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  323 (423)
                      +|.||+.+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus       141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999998888888888777666777776666666655

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.14  E-value=0.0041  Score=62.12  Aligned_cols=85  Identities=20%  Similarity=0.207  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507          276 EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC  355 (423)
Q Consensus       276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  355 (423)
                      ..|..+..+-.+.|.+.+|.+-|-+..      |...|..+|+...+.|.|++-.+++...++..-.|...+  .||-+|
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAY 1176 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHH
Confidence            355666666666666666555443222      555566666666666666666666665555444454332  455566


Q ss_pred             HHcCCHHHHHHHH
Q 014507          356 EKENQLNRALEFL  368 (423)
Q Consensus       356 ~~~g~~~~a~~~~  368 (423)
                      ++.+++.+.++++
T Consensus      1177 Akt~rl~elE~fi 1189 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI 1189 (1666)
T ss_pred             HHhchHHHHHHHh
Confidence            6666555544443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.14  E-value=0.0053  Score=56.58  Aligned_cols=199  Identities=15%  Similarity=0.064  Sum_probs=123.2

Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507          167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM  246 (423)
Q Consensus       167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  246 (423)
                      .|+...+...+.+......-..+-.++.+-.+.  .-...-|..-+. +...|++++|+..++.+...- +-|+......
T Consensus       271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~~-~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~  346 (484)
T COG4783         271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRALQ-TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELA  346 (484)
T ss_pred             CccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHHH-HHHhcccchHHHHHHHHHHhC-CCCHHHHHHH
Confidence            345555555555544443333333333332221  112333443333 347788888888888877652 3355556666


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507          247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS  326 (423)
Q Consensus       247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  326 (423)
                      ...+.+.++.++|.+.++++...... .....-.+..++.+.|++.+|..+++...... +-|...|..|.++|...|+.
T Consensus       347 ~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         347 GDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence            77788888888888888888875432 25566667788888888888888888777553 44788888888888888887


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHH
Q 014507          327 QKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD--GFMVGKEASCTLAAW  389 (423)
Q Consensus       327 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~l~~~  389 (423)
                      .++..-..+                  .+...|++++|...+....+.  .-.|+..-+...|+.
T Consensus       425 ~~a~~A~AE------------------~~~~~G~~~~A~~~l~~A~~~~~~~~~~~aR~dari~~  471 (484)
T COG4783         425 AEALLARAE------------------GYALAGRLEQAIIFLMRASQQVKLGFPDWARADARIDQ  471 (484)
T ss_pred             HHHHHHHHH------------------HHHhCCCHHHHHHHHHHHHHhccCCcHHHHHHHHHHHH
Confidence            777655443                  344567777777777666654  122333334444443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.12  E-value=7.6e-05  Score=54.33  Aligned_cols=78  Identities=14%  Similarity=0.272  Sum_probs=47.4

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014507          280 ALLRGYSMNGNSEGAQRVFEAIQFAGI-TPDARMCALLINAYQMAG--------QSQKAYTAFQNMRKAGLEPSDKCVAL  350 (423)
Q Consensus       280 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~  350 (423)
                      ..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        .+-+.+.+|++|...+++|+..||+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            344445555666666666666666666 666666666666655432        23345566666666667777777777


Q ss_pred             HHHHHHH
Q 014507          351 ILSACEK  357 (423)
Q Consensus       351 li~~~~~  357 (423)
                      ++..+.+
T Consensus       110 vl~~Llk  116 (120)
T PF08579_consen  110 VLGSLLK  116 (120)
T ss_pred             HHHHHHH
Confidence            6666543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.10  E-value=0.00019  Score=66.10  Aligned_cols=124  Identities=11%  Similarity=0.058  Sum_probs=75.9

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507          173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR  252 (423)
Q Consensus       173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  252 (423)
                      ...++..+...++++.|..+|+++.+..  |+  ....++..+...++-.+|.+++++..+.. +-+......-...+.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            3445555556667777777777776663  22  33446666666666667777776666542 3355555555556666


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507          253 AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQ  302 (423)
Q Consensus       253 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  302 (423)
                      .++++.|..+.+++.+.... +-.+|..|..+|.+.|+++.|+..++.+.
T Consensus       247 k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             cCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            66677777777666664322 34466666677777777777766666554

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.09  E-value=6.2e-05  Score=69.60  Aligned_cols=126  Identities=14%  Similarity=0.093  Sum_probs=109.8

Q ss_pred             hcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 014507          163 EESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR--GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK  240 (423)
Q Consensus       163 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~  240 (423)
                      ..+.+-+......+++.+....+++.+..++.+....  ....-..|..++++.|.+.|..+.++.+++.=...|+-||.
T Consensus        59 ~~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~  138 (429)
T PF10037_consen   59 ERKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDN  138 (429)
T ss_pred             hcCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCCh
Confidence            3455667888889999999999999999999998776  33233456679999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 014507          241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN  288 (423)
Q Consensus       241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  288 (423)
                      .+++.||+.+.+.|++..|.++..+|...+...+..|+...+.+|.+.
T Consensus       139 ~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  139 FSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            999999999999999999999999999888777888888888888776

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.08  E-value=9.1e-05  Score=53.93  Aligned_cols=77  Identities=9%  Similarity=0.141  Sum_probs=43.4

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCC--------hhHHHHHHHHHHhCCCCCCHHHHHH
Q 014507          210 VMVVMYSKAGNLKMAEETFEEIKLLGE-PLDKRSYGSMVMAYVRAGM--------LDRGEVLLREMDAQEVYVGSEVYKA  280 (423)
Q Consensus       210 ~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~--------~~~a~~~~~~m~~~~~~p~~~~~~~  280 (423)
                      ..|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..-        +-..+.+|++|...+++|+..+|+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            344455555666666666666666666 6666666666666555321        2234455555555555555555555


Q ss_pred             HHHHHH
Q 014507          281 LLRGYS  286 (423)
Q Consensus       281 li~~~~  286 (423)
                      ++..+.
T Consensus       110 vl~~Ll  115 (120)
T PF08579_consen  110 VLGSLL  115 (120)
T ss_pred             HHHHHH
Confidence            555443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=0.0027  Score=63.33  Aligned_cols=215  Identities=8%  Similarity=0.010  Sum_probs=113.6

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      +..|..+..+-.+.|.+.+|.+-|-+  ..    |+..|.-+++...+.|.+++-.+++.-.++..-+|.+.  +.||-+
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyik--ad----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIK--AD----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHh--cC----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence            34667777777777777777665522  22    55667777777777777777777776666655444443  356677


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--------------------CCCCC
Q 014507          250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA--------------------GITPD  309 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------g~~p~  309 (423)
                      |++.++..+.++++       ..|+......+-+-|...|.++.|.-+|......                    .-.-+
T Consensus      1176 yAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred             HHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            77777665554443       1234444444444444444444444333322100                    00114


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHH
Q 014507          310 ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAW  389 (423)
Q Consensus       310 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~  389 (423)
                      ..||..+-.+|...+.+.-|     .|-..++.....-..-++.-|...|-+++.+.+++..... -.....+|+.|.-.
T Consensus      1249 ~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL-ERAHMgmfTELaiL 1322 (1666)
T KOG0985|consen 1249 TKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL-ERAHMGMFTELAIL 1322 (1666)
T ss_pred             hhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch-hHHHHHHHHHHHHH
Confidence            44555555555544444322     2222233334445666777777777777776666553321 12234556666666


Q ss_pred             HHHcCCHHHHHHHHHHh
Q 014507          390 FKRLGVVEEVEHVLREY  406 (423)
Q Consensus       390 ~~~~g~~~~A~~~~~~m  406 (423)
                      |.+- +.++..+-++-.
T Consensus      1323 Ysky-kp~km~EHl~LF 1338 (1666)
T KOG0985|consen 1323 YSKY-KPEKMMEHLKLF 1338 (1666)
T ss_pred             HHhc-CHHHHHHHHHHH
Confidence            6653 344444444433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=98.05  E-value=0.0032  Score=56.71  Aligned_cols=114  Identities=14%  Similarity=0.121  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACE  356 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  356 (423)
                      +.+..|.-+...|+...|.++-.+..    .||..-|-..+.+++..++|++-.++...    .-.|  .-|..++.+|.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKsP--IGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----KKSP--IGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCCC--CChHHHHHHHH
Confidence            55566777788899999999988876    79999999999999999999988876442    2233  67899999999


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507          357 KENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       357 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  410 (423)
                      +.|...+|..+..+     ++     +..-+..|.++|++.+|.+.--+.++.+
T Consensus       249 ~~~~~~eA~~yI~k-----~~-----~~~rv~~y~~~~~~~~A~~~A~~~kd~~  292 (319)
T PF04840_consen  249 KYGNKKEASKYIPK-----IP-----DEERVEMYLKCGDYKEAAQEAFKEKDID  292 (319)
T ss_pred             HCCCHHHHHHHHHh-----CC-----hHHHHHHHHHCCCHHHHHHHHHHcCCHH
Confidence            99999999988877     22     2567788899999999988866655543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.02  E-value=0.00073  Score=53.66  Aligned_cols=125  Identities=16%  Similarity=0.163  Sum_probs=70.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD---ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS--DKCVALI  351 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~l  351 (423)
                      .|..++..+ ..++...+...++.+.... +.+   ....-.+...+...|++++|...|+........|+  ......+
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            344444444 3566666666666666542 112   12223344566667777777777777766542222  1233345


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          352 LSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLRE  405 (423)
Q Consensus       352 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  405 (423)
                      ...+...|++++|...++......  .....+....+.|.+.|++++|...|++
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            566666777777777775533222  2344555666777777777777777654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.02  E-value=0.00068  Score=53.82  Aligned_cols=20  Identities=20%  Similarity=0.172  Sum_probs=8.7

Q ss_pred             HHHcCChhHHHHHHHHHHhC
Q 014507          250 YVRAGMLDRGEVLLREMDAQ  269 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~  269 (423)
                      +...|++++|...|+...+.
T Consensus        58 ~~~~g~~~~A~~~l~~~~~~   77 (145)
T PF09976_consen   58 AYEQGDYDEAKAALEKALAN   77 (145)
T ss_pred             HHHCCCHHHHHHHHHHHHhh
Confidence            33444444444444444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.01  E-value=0.013  Score=54.63  Aligned_cols=321  Identities=13%  Similarity=0.022  Sum_probs=180.0

Q ss_pred             cchHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHH
Q 014507           84 ITEEQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVA  157 (423)
Q Consensus        84 ~~~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~  157 (423)
                      ++.++.+.|...|-....   .|-+.|..=..+|+..|++++|++=-.+-  +.|+. ..|+....++.-.|++++|..-
T Consensus        13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~a   92 (539)
T KOG0548|consen   13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILA   92 (539)
T ss_pred             cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHH
Confidence            344555556655554432   35556666677888888888887665554  55665 5688888888888888888777


Q ss_pred             HHHHhhcccCCCHHHHHHHHHHHHccCC---------------------------------------------------H
Q 014507          158 ELALLEESFEANIRDYTKIIHGYGKKMQ---------------------------------------------------I  186 (423)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~li~~~~~~~~---------------------------------------------------~  186 (423)
                      +..-++.. +-|...++.+..++.....                                                   +
T Consensus        93 y~~GL~~d-~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~  171 (539)
T KOG0548|consen   93 YSEGLEKD-PSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL  171 (539)
T ss_pred             HHHHhhcC-CchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence            76555443 2344556666655521100                                                   0


Q ss_pred             HHHHHHHHHHH-----HcC-------CCC------------C----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          187 QNAENTLLAMK-----RRG-------FIC------------D----------QVTLTVMVVMYSKAGNLKMAEETFEEIK  232 (423)
Q Consensus       187 ~~a~~~~~~m~-----~~g-------~~p------------~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~  232 (423)
                      ..|...+....     ..|       ..|            |          ..-...+.++..+..+++.|.+-+....
T Consensus       172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~  251 (539)
T KOG0548|consen  172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL  251 (539)
T ss_pred             HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            00000000000     000       001            0          0112445556666666777777777666


Q ss_pred             HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH-------HHHHHHhCCCHHHHHHHHHHHHHCC
Q 014507          233 LLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKA-------LLRGYSMNGNSEGAQRVFEAIQFAG  305 (423)
Q Consensus       233 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~-------li~~~~~~g~~~~a~~~~~~m~~~g  305 (423)
                      +..  -+..-++..-.+|...|.+......-....+.|.. ...-|+.       +-.+|.+.++++.|...|.+.....
T Consensus       252 el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~  328 (539)
T KOG0548|consen  252 ELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEH  328 (539)
T ss_pred             hHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhh
Confidence            653  34445556666667777666665555555554433 2222332       3335555667777777777655443


Q ss_pred             CCCCHHHH-------------------------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507          306 ITPDARMC-------------------------ALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ  360 (423)
Q Consensus       306 ~~p~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  360 (423)
                      ..|+..+-                         ..=...+.+.|++..|.+.|.++++.. +-|...|..-.-+|.+.|.
T Consensus       329 Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~  407 (539)
T KOG0548|consen  329 RTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGE  407 (539)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhh
Confidence            34433220                         111334566778888888888877754 3356777777777777777


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507          361 LNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       361 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  410 (423)
                      +..|..=.+...+.. ++....|..=..++.-..+|+.|.+.|.+-.+.+
T Consensus       408 ~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d  456 (539)
T KOG0548|consen  408 YPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            777776666655541 2233445444555555667777777777655543

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.96  E-value=0.013  Score=56.97  Aligned_cols=250  Identities=12%  Similarity=-0.002  Sum_probs=168.9

Q ss_pred             HHHHHHHHHhcCC---ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Q 014507          121 SDLLAAWVRFMKP---RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMK  197 (423)
Q Consensus       121 ~~a~~~~~~~~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  197 (423)
                      .++++.+++.++-   |..+.-.+---++..++.+.|.......++-+..-+...|..+.-.+...+++.+|+.+.+...
T Consensus       461 ~kslqale~av~~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al  540 (799)
T KOG4162|consen  461 KKSLQALEEAVQFDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAAL  540 (799)
T ss_pred             HHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            4566667766332   2233333344567788899998888888888778899999999999999999999999988765


Q ss_pred             Hc-CCC------------------CCHHHHHHHHHHHHH---------c--------------CCHHHHHHHHHHHH---
Q 014507          198 RR-GFI------------------CDQVTLTVMVVMYSK---------A--------------GNLKMAEETFEEIK---  232 (423)
Q Consensus       198 ~~-g~~------------------p~~~~~~~li~~~~~---------~--------------g~~~~A~~~~~~m~---  232 (423)
                      +. |..                  --..|...++..+-.         .              ++...|.+..+.+.   
T Consensus       541 ~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~  620 (799)
T KOG4162|consen  541 EEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLV  620 (799)
T ss_pred             HHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHH
Confidence            53 210                  001122222222210         0              01111111111110   


Q ss_pred             -----HcC---------CC--CC------HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507          233 -----LLG---------EP--LD------KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN  290 (423)
Q Consensus       233 -----~~g---------~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  290 (423)
                           ..|         +.  |+      ...|......+.+.+..++|...+.+..+.... ....|......+...|.
T Consensus       621 a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~  699 (799)
T KOG4162|consen  621 ASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQ  699 (799)
T ss_pred             HhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHh
Confidence                 001         01  11      123445556667777888888777777765432 56677777778888899


Q ss_pred             HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507          291 SEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYT--AFQNMRKAGLEPSDKCVALILSACEKENQLNRALEF  367 (423)
Q Consensus       291 ~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  367 (423)
                      .++|.+.|.....-  .| +..+..++...+.+.|+...|..  ++.++.+.+ +.+...|-.+...+.+.|+.++|.+.
T Consensus       700 ~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaec  776 (799)
T KOG4162|consen  700 LEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAEC  776 (799)
T ss_pred             hHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHH
Confidence            99999999887764  45 56778899999999999888888  999998865 44688999999999999999999999


Q ss_pred             HHHHHHC
Q 014507          368 LIDLERD  374 (423)
Q Consensus       368 ~~~m~~~  374 (423)
                      |....+.
T Consensus       777 f~aa~qL  783 (799)
T KOG4162|consen  777 FQAALQL  783 (799)
T ss_pred             HHHHHhh
Confidence            9987664

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.94  E-value=1e-05  Score=45.10  Aligned_cols=29  Identities=34%  Similarity=0.529  Sum_probs=13.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507          312 MCALLINAYQMAGQSQKAYTAFQNMRKAG  340 (423)
Q Consensus       312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~  340 (423)
                      +|+.+|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            34444444444444444444444444433

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.92  E-value=0.00039  Score=57.27  Aligned_cols=47  Identities=32%  Similarity=0.367  Sum_probs=24.3

Q ss_pred             CHHHHHHHHHHHHH-----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014507          239 DKRSYGSMVMAYVR-----AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGY  285 (423)
Q Consensus       239 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  285 (423)
                      |..+|..++..|.+     .|..+.....++.|.+-|+.-|..+|+.|++.+
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvF   97 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVF   97 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhC
Confidence            44455555555442     244555555555555555555555555555544

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.91  E-value=0.004  Score=60.85  Aligned_cols=240  Identities=10%  Similarity=0.049  Sum_probs=162.2

Q ss_pred             hHHHHHHHHh--ccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhc---------ccCCCHH
Q 014507          103 CKAFVKQIIC--VSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEE---------SFEANIR  171 (423)
Q Consensus       103 ~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---------~~~~~~~  171 (423)
                      |..|-.++++  .|...|+.+.|.+.++-.  .+...|..+.+.|.+..+.+-|......|...         .-.++ .
T Consensus       725 d~~TRkaml~FSfyvtiG~MD~AfksI~~I--kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e  801 (1416)
T KOG3617|consen  725 DESTRKAMLDFSFYVTIGSMDAAFKSIQFI--KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-E  801 (1416)
T ss_pred             CHHHHHhhhceeEEEEeccHHHHHHHHHHH--hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-c
Confidence            5567777776  788999999998776543  23457888888888888887776665555331         11232 2


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV  251 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  251 (423)
                      +=..+.-.....|.+++|+.++.+-++.    |     .|-..|-..|.+++|.++-+.--.-.   -..||..-..-+-
T Consensus       802 ~eakvAvLAieLgMlEeA~~lYr~ckR~----D-----LlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Le  869 (1416)
T KOG3617|consen  802 DEAKVAVLAIELGMLEEALILYRQCKRY----D-----LLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLE  869 (1416)
T ss_pred             hhhHHHHHHHHHhhHHHHHHHHHHHHHH----H-----HHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHH
Confidence            3333344456789999999999988775    2     34456677899999988875433221   2345666666666


Q ss_pred             HcCChhHHHHHHHHHHhC----------CC---------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH
Q 014507          252 RAGMLDRGEVLLREMDAQ----------EV---------YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARM  312 (423)
Q Consensus       252 ~~~~~~~a~~~~~~m~~~----------~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~  312 (423)
                      ..+|.+.|++.|++....          ..         ..|...|.-...-.-..|+++.|+.+|.....         
T Consensus       870 ar~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------  940 (1416)
T KOG3617|consen  870 ARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------  940 (1416)
T ss_pred             hhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------
Confidence            678888888777653211          10         11334444445555567777777777776653         


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE  372 (423)
Q Consensus       313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  372 (423)
                      |-++++..|-.|+.++|.++-++-      -|......+.+.|-..|++.+|..+|.+..
T Consensus       941 ~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence            457778888889999998876652      366667788999999999999999988765

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.90  E-value=0.00037  Score=57.41  Aligned_cols=49  Identities=14%  Similarity=0.353  Sum_probs=30.2

Q ss_pred             CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507          204 DQVTLTVMVVMYSKA-----GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR  252 (423)
Q Consensus       204 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  252 (423)
                      |..+|..+++.|.+.     |..+-....++.|.+-|+..|..+|+.|++.+=+
T Consensus        46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK   99 (228)
T PF06239_consen   46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK   99 (228)
T ss_pred             cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC
Confidence            555666666655533     4555566666666666766677777766666543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=97.89  E-value=0.011  Score=54.57  Aligned_cols=163  Identities=13%  Similarity=-0.008  Sum_probs=112.4

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014507          203 CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALL  282 (423)
Q Consensus       203 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  282 (423)
                      |+...+...+.+......-..+-.++.+..+.  .-...-|..- ..+...|+++.|+..++.+...... |........
T Consensus       272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~  347 (484)
T COG4783         272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAG  347 (484)
T ss_pred             ccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            44455555555544443333333333332221  1122334433 3455778999999999998876433 566666777


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507          283 RGYSMNGNSEGAQRVFEAIQFAGITPD-ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQL  361 (423)
Q Consensus       283 ~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  361 (423)
                      +.+.+.++.++|.+.++++...  .|+ ...+-.+..+|.+.|++.+|..++++..... +-|+..|..|..+|...|+.
T Consensus       348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence            8899999999999999998875  565 5566677888999999999999999887653 55788899999999999988


Q ss_pred             HHHHHHHHHHH
Q 014507          362 NRALEFLIDLE  372 (423)
Q Consensus       362 ~~a~~~~~~m~  372 (423)
                      .++.....+..
T Consensus       425 ~~a~~A~AE~~  435 (484)
T COG4783         425 AEALLARAEGY  435 (484)
T ss_pred             HHHHHHHHHHH
Confidence            88776665543

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.88  E-value=0.0011  Score=63.72  Aligned_cols=164  Identities=17%  Similarity=0.220  Sum_probs=76.7

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 014507          217 KAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQR  296 (423)
Q Consensus       217 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  296 (423)
                      ..+.|.+|+.+++.++...  .-..-|..+...|+..|+++.|.++|-+.   +      .++-.|.+|.+.|+++.|.+
T Consensus       744 ~akew~kai~ildniqdqk--~~s~yy~~iadhyan~~dfe~ae~lf~e~---~------~~~dai~my~k~~kw~da~k  812 (1636)
T KOG3616|consen  744 GAKEWKKAISILDNIQDQK--TASGYYGEIADHYANKGDFEIAEELFTEA---D------LFKDAIDMYGKAGKWEDAFK  812 (1636)
T ss_pred             hhhhhhhhHhHHHHhhhhc--cccccchHHHHHhccchhHHHHHHHHHhc---c------hhHHHHHHHhccccHHHHHH
Confidence            3344444444444444331  12223444445555555555555554321   1      23334555555555555555


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507          297 VFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGF  376 (423)
Q Consensus       297 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  376 (423)
                      +-++..  |....+..|-+-..-+-.+|++.+|.++|-...    .|+.     .|..|-+.|..++.+++.++-...  
T Consensus       813 la~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~h~d--  879 (1636)
T KOG3616|consen  813 LAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKHHGD--  879 (1636)
T ss_pred             HHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHhChh--
Confidence            544433  112233334444444445555555555543332    2332     345555666666655555442211  


Q ss_pred             CcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          377 MVGKEASCTLAAWFKRLGVVEEVEHVLRE  405 (423)
Q Consensus       377 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  405 (423)
                       .-..|...+..-|...|+...|.+-|-+
T Consensus       880 -~l~dt~~~f~~e~e~~g~lkaae~~fle  907 (1636)
T KOG3616|consen  880 -HLHDTHKHFAKELEAEGDLKAAEEHFLE  907 (1636)
T ss_pred             -hhhHHHHHHHHHHHhccChhHHHHHHHh
Confidence             1133445566666666777766665543

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.87  E-value=0.012  Score=49.65  Aligned_cols=185  Identities=12%  Similarity=0.025  Sum_probs=137.4

Q ss_pred             CCCCHHHHHHHHHHh--------cCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCH
Q 014507          116 ETGNLSDLLAAWVRF--------MKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQI  186 (423)
Q Consensus       116 ~~g~~~~a~~~~~~~--------~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  186 (423)
                      ...+.++.++++.++        ..|+. ..|-.++-+....++.+.|+.....+.+.- +-+..+--.-.--+-..|++
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f-p~S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF-PGSKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhch
Confidence            456778888888775        33555 456677788888999999999988876654 33333333223334567899


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 014507          187 QNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREM  266 (423)
Q Consensus       187 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  266 (423)
                      ++|.++++.+.+.. +.|..+|..=+...-..|.--+|++-+.+..+. +..|...|.-+...|...|++++|.-.++++
T Consensus       103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            99999999999886 337777877676666778877898888888876 4679999999999999999999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHC
Q 014507          267 DAQEVYVGSEVYKALLRGYSMNG---NSEGAQRVFEAIQFA  304 (423)
Q Consensus       267 ~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~  304 (423)
                      .-.... +...+..+...+.-.|   +.+.+.+.|....+.
T Consensus       181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            885432 4555556666555444   456788888888764

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.86  E-value=2.2e-05  Score=43.65  Aligned_cols=27  Identities=26%  Similarity=0.452  Sum_probs=11.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          208 LTVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       208 ~~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      |+.+|++|++.|++++|.++|++|.+.
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            444444444444444444444444433

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.84  E-value=0.016  Score=54.24  Aligned_cols=182  Identities=13%  Similarity=0.067  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHH
Q 014507          221 LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV-GSEVYKALLRGYSMNGNSEGAQRVFE  299 (423)
Q Consensus       221 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~  299 (423)
                      .+....+++++...-..--.-+|...|+.-.+..-+..|..+|.+..+.+..+ +..+++++|..||. ++.+-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence            56667777777664322233467778888888888999999999999988877 77788888888776 67889999998


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-C-
Q 014507          300 AIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS--DKCVALILSACEKENQLNRALEFLIDLERD-G-  375 (423)
Q Consensus       300 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g-  375 (423)
                      --.++ ..-+..--...++-+...++-..+..+|++....++.||  ...|..++.-=..-|++..+.++-+++... . 
T Consensus       426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~  504 (656)
T KOG1914|consen  426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA  504 (656)
T ss_pred             HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence            64443 122334446677888888999999999999998877776  468999999889999999998888876543 1 


Q ss_pred             -CCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507          376 -FMVGKEASCTLAAWFKRLGVVEEVEHVLR  404 (423)
Q Consensus       376 -~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  404 (423)
                       ..+....-..+++.|.-.+.+..-..=++
T Consensus       505 ~qe~~~~~~~~~v~RY~~~d~~~c~~~elk  534 (656)
T KOG1914|consen  505 DQEYEGNETALFVDRYGILDLYPCSLDELK  534 (656)
T ss_pred             hhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence             22223344456666665555544333333

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.78  E-value=0.034  Score=52.12  Aligned_cols=150  Identities=13%  Similarity=0.080  Sum_probs=115.4

Q ss_pred             hhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          256 LDRGEVLLREMDAQ-EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAF  333 (423)
Q Consensus       256 ~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~  333 (423)
                      .+.....++++... ...| .-+|..+|+.-.+..-++.|..+|.+..+.+..+ ++..++++|.-||. ++.+-|.++|
T Consensus       347 ~~~~~~~~~~ll~~~~~~~-tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF  424 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDL-TLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF  424 (656)
T ss_pred             hhhhHHHHHHHHhhhccCC-ceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence            34445555555543 2333 3478888999999999999999999999987777 78888999988775 5788999999


Q ss_pred             HHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          334 QNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVG--KEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       334 ~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      +--.+.  .+| +.--...+.-+...++-..+..+|++....+++++  ..+|..+++-=..-|+...+.++-+++...
T Consensus       425 eLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  425 ELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             HHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            876552  233 34445667777888998999999999998877665  588999999888999999999998877543

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.72  E-value=0.00096  Score=47.78  Aligned_cols=90  Identities=18%  Similarity=0.093  Sum_probs=42.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 014507          315 LLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLG  394 (423)
Q Consensus       315 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g  394 (423)
                      .+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~   82 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG   82 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence            33444444555555555555544421 1122344444444455555555555555544432 122234445555555555


Q ss_pred             CHHHHHHHHHHh
Q 014507          395 VVEEVEHVLREY  406 (423)
Q Consensus       395 ~~~~A~~~~~~m  406 (423)
                      ++++|...+++.
T Consensus        83 ~~~~a~~~~~~~   94 (100)
T cd00189          83 KYEEALEAYEKA   94 (100)
T ss_pred             hHHHHHHHHHHH
Confidence            555555555544

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.71  E-value=0.00097  Score=47.75  Aligned_cols=89  Identities=17%  Similarity=0.138  Sum_probs=38.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507          176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM  255 (423)
Q Consensus       176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~  255 (423)
                      +...+...|++++|...+++..+.... +...+..+...+...|++++|.+.|+...+.. +.+..++..+...+...|+
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~   83 (100)
T cd00189           6 LGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGK   83 (100)
T ss_pred             HHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHh
Confidence            333444444555555555444443211 22334444444444444444544444444432 1222334444444444444


Q ss_pred             hhHHHHHHHHH
Q 014507          256 LDRGEVLLREM  266 (423)
Q Consensus       256 ~~~a~~~~~~m  266 (423)
                      ++.|...+...
T Consensus        84 ~~~a~~~~~~~   94 (100)
T cd00189          84 YEEALEAYEKA   94 (100)
T ss_pred             HHHHHHHHHHH
Confidence            44444444443

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.70  E-value=0.0023  Score=48.60  Aligned_cols=95  Identities=11%  Similarity=-0.016  Sum_probs=43.7

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHH
Q 014507          175 KIIHGYGKKMQIQNAENTLLAMKRRGFI--CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP--LDKRSYGSMVMAY  250 (423)
Q Consensus       175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--~~~~~~~~li~~~  250 (423)
                      .....+.+.|++++|.+.|+.+.+....  .....+..+...+.+.|+++.|...|+.+......  .....+..+..++
T Consensus         7 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~   86 (119)
T TIGR02795         7 DAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMSL   86 (119)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHHH
Confidence            3444445555555555555555443211  01223344555555555555555555555442111  1123344444455


Q ss_pred             HHcCChhHHHHHHHHHHhC
Q 014507          251 VRAGMLDRGEVLLREMDAQ  269 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~~  269 (423)
                      .+.|+.++|...++++.+.
T Consensus        87 ~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        87 QELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHhCChHHHHHHHHHHHHH
Confidence            5555555555555555544

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.70  E-value=0.067  Score=53.18  Aligned_cols=220  Identities=10%  Similarity=0.067  Sum_probs=152.9

Q ss_pred             CCCCHHHHHHHHHHh--cCCChhhHHHHHHHHH--hcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHH
Q 014507          116 ETGNLSDLLAAWVRF--MKPRRADWLAVLKQLK--LMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAEN  191 (423)
Q Consensus       116 ~~g~~~~a~~~~~~~--~~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  191 (423)
                      ..+++.+|+.-..+.  ..|+. .|..+++++.  +.|+.++|..+.+.....+.. |..|...+-.+|...++.++|..
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~   98 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVH   98 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHH
Confidence            567888999888886  34554 5666777664  689999998777766555543 88899999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHH
Q 014507          192 TLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM----------LDRGEV  261 (423)
Q Consensus       192 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~----------~~~a~~  261 (423)
                      +|++....  -|+......+..+|.+.+++.+-.+.--+|-+. .+-....|-++++.....-.          ..-|.+
T Consensus        99 ~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~  175 (932)
T KOG2053|consen   99 LYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEK  175 (932)
T ss_pred             HHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHH
Confidence            99998876  456777788889999998887654444444432 23455566666666654321          234566


Q ss_pred             HHHHHHhCC-CCCCHHHHHHHHHHHHhCCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          262 LLREMDAQE-VYVGSEVYKALLRGYSMNGNSEGAQRVFE-AIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA  339 (423)
Q Consensus       262 ~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  339 (423)
                      .++.+.+.+ ..-+..-...-...+-..|++++|++++. ...+.-...+...-+.-+..+...++|.+..++-.++...
T Consensus       176 m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k  255 (932)
T KOG2053|consen  176 MVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEK  255 (932)
T ss_pred             HHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence            666666554 22233333344455667788999999994 4443322335555567778888899999999999888886


Q ss_pred             C
Q 014507          340 G  340 (423)
Q Consensus       340 ~  340 (423)
                      |
T Consensus       256 ~  256 (932)
T KOG2053|consen  256 G  256 (932)
T ss_pred             C
Confidence            5

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.68  E-value=0.073  Score=52.93  Aligned_cols=222  Identities=14%  Similarity=0.053  Sum_probs=149.6

Q ss_pred             hcCCchHHHHHHHHHhhcccCCCHHHHHHHHHH--HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507          147 LMEHPLYLQVAELALLEESFEANIRDYTKIIHG--YGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMA  224 (423)
Q Consensus       147 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  224 (423)
                      ..+++..|......+.+.-  ||. .|..++.+  +.+.|+.++|..+++.....+.. |..|...+-..|.+.+..++|
T Consensus        21 d~~qfkkal~~~~kllkk~--Pn~-~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~   96 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKH--PNA-LYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEA   96 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHC--CCc-HHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHH
Confidence            3455666655555554432  332 23444444  45789999999999988877666 899999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC----------HHHH
Q 014507          225 EETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN----------SEGA  294 (423)
Q Consensus       225 ~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a  294 (423)
                      ..+|+.....  .|+..-...+..+|.+.+.+.+-.+.--+|.+. .+-+.+.|-++++...+...          ..-|
T Consensus        97 ~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA  173 (932)
T KOG2053|consen   97 VHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALA  173 (932)
T ss_pred             HHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHH
Confidence            9999999875  577888888999999988877655554444443 33355666666666554321          2346


Q ss_pred             HHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          295 QRVFEAIQFAG-ITPDARMCALLINAYQMAGQSQKAYTAFQ-NMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE  372 (423)
Q Consensus       295 ~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~-~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  372 (423)
                      .+.++.+.+.+ -.-+..-.-.-...+-..|.+++|++++. ...+.-..-+...-+.-+..+...+++.+..++-.++.
T Consensus       174 ~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll  253 (932)
T KOG2053|consen  174 EKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLL  253 (932)
T ss_pred             HHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHH
Confidence            66667766543 11122222333445567888999999984 34333333344555566777788889998888888888


Q ss_pred             HCC
Q 014507          373 RDG  375 (423)
Q Consensus       373 ~~g  375 (423)
                      ..|
T Consensus       254 ~k~  256 (932)
T KOG2053|consen  254 EKG  256 (932)
T ss_pred             HhC
Confidence            875

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.66  E-value=0.0029  Score=48.04  Aligned_cols=21  Identities=33%  Similarity=0.381  Sum_probs=8.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHH
Q 014507          316 LINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       316 li~~~~~~g~~~~a~~~~~~m  336 (423)
                      +..++.+.|++++|.+.|+.+
T Consensus        45 l~~~~~~~~~~~~A~~~~~~~   65 (119)
T TIGR02795        45 LGEAYYAQGKYADAAKAFLAV   65 (119)
T ss_pred             HHHHHHhhccHHHHHHHHHHH
Confidence            333333444444444444433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.63  E-value=0.032  Score=48.45  Aligned_cols=57  Identities=16%  Similarity=0.128  Sum_probs=30.0

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          177 IHGYGKKMQIQNAENTLLAMKRRGFICDQVTL---TVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       177 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      ...+...|++++|.+.|+.+...-..+ ....   -.+..++.+.+++++|...+++..+.
T Consensus        39 A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~   98 (243)
T PRK10866         39 AQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL   98 (243)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            333445566666666666665543222 1111   23445555666666666666666554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.62  E-value=0.0023  Score=56.95  Aligned_cols=129  Identities=13%  Similarity=0.141  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVM-YSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY  250 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  250 (423)
                      +|..+++..-+.+..+.|..+|.+..+.+. .+...|...... |...++.+.|.++|+...+. +..+...|..-+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~-~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR-CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            344445555555555555555555543311 112222222222 11233444455555554443 233444444444555


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507          251 VRAGMLDRGEVLLREMDAQEVYVG---SEVYKALLRGYSMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~  303 (423)
                      .+.++.+.|..+|++.... +.++   ...|...+..-.+.|+.+.+..+.+.+.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            5555555555555554433 1111   12444444444444444444444444443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.62  E-value=0.0026  Score=56.62  Aligned_cols=144  Identities=10%  Similarity=0.101  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014507          206 VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR-AGMLDRGEVLLREMDAQEVYVGSEVYKALLRG  284 (423)
Q Consensus       206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  284 (423)
                      .+|..++...-+.+..+.|..+|.+..+.+ ..+...|......-.+ .++.+.|.++|+...+. ...+...+...++.
T Consensus         2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~   79 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDF   79 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence            467788888888888888888888887543 2234444444444223 46666688888888775 33467778888888


Q ss_pred             HHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507          285 YSMNGNSEGAQRVFEAIQFAGITPDA----RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC  355 (423)
Q Consensus       285 ~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  355 (423)
                      +.+.++.+.|..+|+.....  .|..    ..|...++-=.+.|+.+.+.++.+++.+  ..|+...+..++.-|
T Consensus        80 l~~~~d~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry  150 (280)
T PF05843_consen   80 LIKLNDINNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY  150 (280)
T ss_dssp             HHHTT-HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred             HHHhCcHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence            88888888888888888765  3333    4788888888888888888888888877  345544444554444

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.61  E-value=0.006  Score=49.98  Aligned_cols=82  Identities=16%  Similarity=0.088  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014507          208 LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD--KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGY  285 (423)
Q Consensus       208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  285 (423)
                      +..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++..+.... +...+..+...+
T Consensus        38 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~  116 (172)
T PRK02603         38 YYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            34444444444555555555544443221111  234444444445555555555555444443221 233333444444


Q ss_pred             HhCCC
Q 014507          286 SMNGN  290 (423)
Q Consensus       286 ~~~g~  290 (423)
                      ...|+
T Consensus       117 ~~~g~  121 (172)
T PRK02603        117 HKRGE  121 (172)
T ss_pred             HHcCC
Confidence            44444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.60  E-value=0.00017  Score=51.23  Aligned_cols=81  Identities=16%  Similarity=0.222  Sum_probs=43.4

Q ss_pred             cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 014507          323 AGQSQKAYTAFQNMRKAGL-EPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEH  401 (423)
Q Consensus       323 ~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~  401 (423)
                      .|+++.|+.+++++.+..- .|+...+..+..++.+.|++++|..++++ .+.+. .+......+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4566666666666665321 11333444456666667777777666666 22111 122333345666666777777766


Q ss_pred             HHHH
Q 014507          402 VLRE  405 (423)
Q Consensus       402 ~~~~  405 (423)
                      +|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.56  E-value=0.0084  Score=53.54  Aligned_cols=26  Identities=12%  Similarity=0.077  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMK  197 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~  197 (423)
                      .|....+.|-..+++++|.+.|.+..
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa   62 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAA   62 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHH
Confidence            45566667777777777777776654

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.56  E-value=0.003  Score=58.31  Aligned_cols=87  Identities=10%  Similarity=0.030  Sum_probs=38.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 014507          215 YSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGA  294 (423)
Q Consensus       215 ~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  294 (423)
                      +...|++++|+..|++..+.. +-+...|..+..+|.+.|++++|...++++.+.... +...|..+..+|...|++++|
T Consensus        12 a~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg~~~eA   89 (356)
T PLN03088         12 AFVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLEEYQTA   89 (356)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhCCHHHH
Confidence            334445555555555444432 223344444444444444444444444444443221 333444444444444444444


Q ss_pred             HHHHHHHHH
Q 014507          295 QRVFEAIQF  303 (423)
Q Consensus       295 ~~~~~~m~~  303 (423)
                      ...|+....
T Consensus        90 ~~~~~~al~   98 (356)
T PLN03088         90 KAALEKGAS   98 (356)
T ss_pred             HHHHHHHHH
Confidence            444444443

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.50  E-value=0.011  Score=48.47  Aligned_cols=94  Identities=13%  Similarity=0.048  Sum_probs=70.2

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICD--QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM  246 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  246 (423)
                      ....+..+...+...|++++|...|++..+.+..+.  ...+..+...+.+.|++++|...+++..+.. +-+...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence            345577778888889999999999998887644332  3578888899999999999999999888753 3356667777


Q ss_pred             HHHHHHcCChhHHHHHH
Q 014507          247 VMAYVRAGMLDRGEVLL  263 (423)
Q Consensus       247 i~~~~~~~~~~~a~~~~  263 (423)
                      ..++...|+...+..-+
T Consensus       113 g~~~~~~g~~~~a~~~~  129 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQ  129 (172)
T ss_pred             HHHHHHcCChHhHhhCH
Confidence            77887777765544333

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=0.09  Score=49.30  Aligned_cols=220  Identities=12%  Similarity=-0.012  Sum_probs=107.2

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH-------H
Q 014507          139 LAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTV-------M  211 (423)
Q Consensus       139 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-------l  211 (423)
                      ..+.++..+..++..+.+-+....+..  -+..-++....++...|.+..+...-+...+.|.. ...-|+.       +
T Consensus       228 k~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~  304 (539)
T KOG0548|consen  228 KELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARL  304 (539)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHh
Confidence            344455555555666655555555443  44555566666677777776666666555555432 2222222       2


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 014507          212 VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS  291 (423)
Q Consensus       212 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  291 (423)
                      ..+|.+.++++.|...|.+.......||...         +....+++........-.+... ..-...-...+.+.|++
T Consensus       305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy  374 (539)
T KOG0548|consen  305 GNAYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY  374 (539)
T ss_pred             hhhhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence            3344555666667776666544322221111         1111222222222221111110 01111113445556666


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          292 EGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLID  370 (423)
Q Consensus       292 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~  370 (423)
                      ..|...|.++.+.. +-|...|....-+|.+.|.+..|++-.+.-.+.  .|+ ...|.-=..++....+++.|.+.|++
T Consensus       375 ~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~e  451 (539)
T KOG0548|consen  375 PEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQE  451 (539)
T ss_pred             HHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            66666666666553 335566666666666666666666655555543  233 33333333344444556666666666


Q ss_pred             HHHC
Q 014507          371 LERD  374 (423)
Q Consensus       371 m~~~  374 (423)
                      ..+.
T Consensus       452 ale~  455 (539)
T KOG0548|consen  452 ALEL  455 (539)
T ss_pred             HHhc
Confidence            5553

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.48  E-value=0.0036  Score=51.12  Aligned_cols=61  Identities=15%  Similarity=-0.062  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507          243 YGSMVMAYVRAGMLDRGEVLLREMDAQEVYV--GSEVYKALLRGYSMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       243 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  303 (423)
                      |..+...+...|++++|...|++.......|  ...++..+...+...|++++|...++....
T Consensus        38 ~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~  100 (168)
T CHL00033         38 YYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE  100 (168)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444444444455555555555544332111  122444444555555555555555554443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.47  E-value=0.00033  Score=49.69  Aligned_cols=47  Identities=15%  Similarity=0.071  Sum_probs=19.6

Q ss_pred             CCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          184 MQIQNAENTLLAMKRRGFI-CDQVTLTVMVVMYSKAGNLKMAEETFEE  230 (423)
Q Consensus       184 ~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~  230 (423)
                      |+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4444444444444444221 1222233344444444555555444444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.46  E-value=0.061  Score=46.68  Aligned_cols=185  Identities=12%  Similarity=0.097  Sum_probs=114.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY---GSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKA  280 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  280 (423)
                      +...+-.....+.+.|++++|.+.|+++...-.. +...-   -.+..++.+.++++.|...+++..+....-...-|..
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~-s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~  109 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPF-GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVL  109 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHH
Confidence            3333334555567789999999999999886422 22222   3466778899999999999999988654433334444


Q ss_pred             HHHHHHh--CC---------------CH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507          281 LLRGYSM--NG---------------NS---EGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG  340 (423)
Q Consensus       281 li~~~~~--~g---------------~~---~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  340 (423)
                      .+.+.+.  .+               |.   .+|...|+.+.+.  -|++             .-..+|...+..+... 
T Consensus       110 Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~--yP~S-------------~ya~~A~~rl~~l~~~-  173 (243)
T PRK10866        110 YMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG--YPNS-------------QYTTDATKRLVFLKDR-  173 (243)
T ss_pred             HHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH--CcCC-------------hhHHHHHHHHHHHHHH-
Confidence            4444331  11               11   2344444444443  2332             3344444444433321 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          341 LEPSDKCVALILSACEKENQLNRALEFLIDLERD--GFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       341 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                        .-..-+ .+.+-|.+.|.+..|..-++.+.+.  +.+........++++|.+.|..++|.++...+..
T Consensus       174 --la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~~  240 (243)
T PRK10866        174 --LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIAA  240 (243)
T ss_pred             --HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHhc
Confidence              111112 4556678888888888888888876  5555667777888899999999998888776543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.45  E-value=0.0098  Score=46.86  Aligned_cols=91  Identities=8%  Similarity=-0.028  Sum_probs=48.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507          211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN  290 (423)
Q Consensus       211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  290 (423)
                      +..-+...|++++|.++|+.+.... +-+..-|-.|..++-..|++++|...|......++. |...+-.+-.++...|+
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~  118 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDN  118 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCC
Confidence            3334445566666666665555543 223444445555555556666666666555555433 45555555555555566


Q ss_pred             HHHHHHHHHHHHH
Q 014507          291 SEGAQRVFEAIQF  303 (423)
Q Consensus       291 ~~~a~~~~~~m~~  303 (423)
                      .+.|.+.|+....
T Consensus       119 ~~~A~~aF~~Ai~  131 (157)
T PRK15363        119 VCYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHHHHH
Confidence            6655555554443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.44  E-value=0.0048  Score=50.34  Aligned_cols=96  Identities=11%  Similarity=0.066  Sum_probs=70.0

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 014507          274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP--DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVAL  350 (423)
Q Consensus       274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~  350 (423)
                      ....+..+...+...|++++|+..|+........+  ...+|..+...+...|++++|.+.++...+.  .| ...++..
T Consensus        34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~--~~~~~~~~~~  111 (168)
T CHL00033         34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALER--NPFLPQALNN  111 (168)
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCcHHHHHH
Confidence            34567777888888999999999999887643222  2357888889999999999999999988764  33 3455666


Q ss_pred             HHHHHH-------HcCCHHHHHHHHHHH
Q 014507          351 ILSACE-------KENQLNRALEFLIDL  371 (423)
Q Consensus       351 li~~~~-------~~g~~~~a~~~~~~m  371 (423)
                      +...+.       ..|+++.|...+++.
T Consensus       112 la~i~~~~~~~~~~~g~~~~A~~~~~~a  139 (168)
T CHL00033        112 MAVICHYRGEQAIEQGDSEIAEAWFDQA  139 (168)
T ss_pred             HHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence            666666       677777665555543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.44  E-value=0.0054  Score=56.61  Aligned_cols=94  Identities=11%  Similarity=-0.073  Sum_probs=81.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507          176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM  255 (423)
Q Consensus       176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~  255 (423)
                      -...+...|++++|++.|++..+.... +...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|+
T Consensus         8 ~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          8 KAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCC
Confidence            356677889999999999999987544 77888889999999999999999999998875 4467789899999999999


Q ss_pred             hhHHHHHHHHHHhCCC
Q 014507          256 LDRGEVLLREMDAQEV  271 (423)
Q Consensus       256 ~~~a~~~~~~m~~~~~  271 (423)
                      +++|...|++..+.+.
T Consensus        86 ~~eA~~~~~~al~l~P  101 (356)
T PLN03088         86 YQTAKAALEKGASLAP  101 (356)
T ss_pred             HHHHHHHHHHHHHhCC
Confidence            9999999999998653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.41  E-value=0.053  Score=54.57  Aligned_cols=216  Identities=15%  Similarity=0.089  Sum_probs=150.2

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014507          185 QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLR  264 (423)
Q Consensus       185 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~  264 (423)
                      +...|+..|-+..+..+. =...|..|...|+..-+...|.+.|++..+.. ..|........+.|++..+++.|..+.-
T Consensus       473 ~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDVS-LAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            466677777666665332 24578899999998889999999999988765 4577788899999999999999998833


Q ss_pred             HHHhCCC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 014507          265 EMDAQEV-YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP  343 (423)
Q Consensus       265 ~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  343 (423)
                      ..-+... ..-...|...--.|.+.++..+|..-|+...... +.|...|..+..+|...|++..|.++|.+...  +.|
T Consensus       551 ~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--LrP  627 (1238)
T KOG1127|consen  551 RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LRP  627 (1238)
T ss_pred             HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cCc
Confidence            3222211 1111223334445777889999999998887653 33889999999999999999999999998876  456


Q ss_pred             CHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHC------CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          344 SDKCVALILSA--CEKENQLNRALEFLIDLERD------GFMVGKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       344 ~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~------g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      +. +|.....+  -+..|.+.++...++.....      +..--..++-.+...+.-.|-..+|.+++++-
T Consensus       628 ~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks  697 (1238)
T KOG1127|consen  628 LS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS  697 (1238)
T ss_pred             Hh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence            53 44443333  35678899998888876543      22233455555555555566666666666543

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.38  E-value=0.02  Score=55.40  Aligned_cols=134  Identities=18%  Similarity=0.135  Sum_probs=60.3

Q ss_pred             CCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC--------hhHHHHHHHHH
Q 014507          201 FICDQVTLTVMVVMYSKAG-----NLKMAEETFEEIKLLGEPLD-KRSYGSMVMAYVRAGM--------LDRGEVLLREM  266 (423)
Q Consensus       201 ~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~~~-~~~~~~li~~~~~~~~--------~~~a~~~~~~m  266 (423)
                      .+.+...|...+++.....     +.+.|..+|++..+.  .|+ ...|..+..++.....        ...+.+..++.
T Consensus       333 ~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a  410 (517)
T PRK10153        333 LPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNI  410 (517)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHh
Confidence            3445566666666543322     255666666666664  333 2334433333322111        11122222221


Q ss_pred             HhC-CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          267 DAQ-EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       267 ~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      ... ....+...|..+.-.....|++++|...+++....  .|+...|..+...+...|+.++|.+.+++...
T Consensus       411 ~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        411 VALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             hhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            111 11223344444444444445555555555555543  24455555555555555555555555555443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.35  E-value=0.02  Score=55.42  Aligned_cols=145  Identities=12%  Similarity=0.049  Sum_probs=104.0

Q ss_pred             cccCCCHHHHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHH
Q 014507          164 ESFEANIRDYTKIIHGYGKK-----MQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG--------NLKMAEETFEE  230 (423)
Q Consensus       164 ~~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~  230 (423)
                      .+.+.|...|...+++....     ++.+.|..+|++..+.... ....|..+..++....        ++..+.+...+
T Consensus       331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            45678889999999885543     2377899999999988433 4455555444443321        23344444444


Q ss_pred             HHHc-CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 014507          231 IKLL-GEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD  309 (423)
Q Consensus       231 m~~~-g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  309 (423)
                      .... ....+...|..+.......|++++|...+++..+.+  |+...|..+...+...|+.++|.+.+++....  .|.
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~  485 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG  485 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence            3332 234466788888777778899999999999999976  57889999999999999999999999988764  455


Q ss_pred             HHHH
Q 014507          310 ARMC  313 (423)
Q Consensus       310 ~~~~  313 (423)
                      ..+|
T Consensus       486 ~pt~  489 (517)
T PRK10153        486 ENTL  489 (517)
T ss_pred             CchH
Confidence            4454

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.34  E-value=0.04  Score=49.16  Aligned_cols=164  Identities=16%  Similarity=0.185  Sum_probs=74.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHh----CCCCC-CHHH
Q 014507          208 LTVMVVMYSKAGNLKMAEETFEEIKLL----GEPLD-KRSYGSMVMAYVRAGMLDRGEVLLREMDA----QEVYV-GSEV  277 (423)
Q Consensus       208 ~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p-~~~~  277 (423)
                      |......|-..|++++|.+.|.+..+.    +-..+ ...|......|.+ .++++|...+++..+    .|-.. -...
T Consensus        38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~  116 (282)
T PF14938_consen   38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAGRFSQAAKC  116 (282)
T ss_dssp             HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT-HHHHHHH
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            333444455566666666666555321    11101 1223333333333 366666666655443    22111 1224


Q ss_pred             HHHHHHHHHhC-CCHHHHHHHHHHHHH----CCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-----CCCH
Q 014507          278 YKALLRGYSMN-GNSEGAQRVFEAIQF----AGITP--DARMCALLINAYQMAGQSQKAYTAFQNMRKAGL-----EPSD  345 (423)
Q Consensus       278 ~~~li~~~~~~-g~~~~a~~~~~~m~~----~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----~p~~  345 (423)
                      +..+...|-.. |++++|.+.|++..+    .| .+  -..++..+...+.+.|++++|.++|++....-+     +.+.
T Consensus       117 ~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~  195 (282)
T PF14938_consen  117 LKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSA  195 (282)
T ss_dssp             HHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhH
Confidence            44555555555 666666666665543    12 11  123445555666666666666666666654321     1122


Q ss_pred             H-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          346 K-CVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       346 ~-~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                      . .|...+-.+...|++..|.+.+++...
T Consensus       196 ~~~~l~a~l~~L~~~D~v~A~~~~~~~~~  224 (282)
T PF14938_consen  196 KEYFLKAILCHLAMGDYVAARKALERYCS  224 (282)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHGT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            1 222233344445666666666666544

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.25  E-value=0.014  Score=45.97  Aligned_cols=97  Identities=4%  Similarity=-0.132  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY  250 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  250 (423)
                      ...-.+..-+...|++++|.++|+.+....+. +..-|-.|.-.+-..|++++|+..|....... +-|+..+-.+..++
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~  113 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECY  113 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence            34445666677889999999999998887544 56667778888888999999999999988876 35778888889999


Q ss_pred             HHcCChhHHHHHHHHHHhC
Q 014507          251 VRAGMLDRGEVLLREMDAQ  269 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~~  269 (423)
                      ...|+.+.|.+-|+.....
T Consensus       114 L~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        114 LACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            9999999999999887764

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.19  E-value=0.03  Score=42.37  Aligned_cols=20  Identities=15%  Similarity=0.099  Sum_probs=8.1

Q ss_pred             HHHHHhCCCHHHHHHHHHHH
Q 014507          282 LRGYSMNGNSEGAQRVFEAI  301 (423)
Q Consensus       282 i~~~~~~g~~~~a~~~~~~m  301 (423)
                      .+.+...|++++|..++++.
T Consensus        45 astlr~LG~~deA~~~L~~~   64 (120)
T PF12688_consen   45 ASTLRNLGRYDEALALLEEA   64 (120)
T ss_pred             HHHHHHcCCHHHHHHHHHHH
Confidence            33344444444444444433

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.17  E-value=0.032  Score=56.03  Aligned_cols=181  Identities=13%  Similarity=0.012  Sum_probs=117.6

Q ss_pred             CHHHHHHHHHHhcCCCh---hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 014507          119 NLSDLLAAWVRFMKPRR---ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLA  195 (423)
Q Consensus       119 ~~~~a~~~~~~~~~p~~---~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  195 (423)
                      +...|+..|-+..+.|.   ..|..|...|+...+...|...+....+.. ..+...+......|+...+++.|..+.-.
T Consensus       473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~  551 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLR  551 (1238)
T ss_pred             hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHH
Confidence            36677777766654443   567777777777777777777777665543 34566677788888888888888887333


Q ss_pred             HHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 014507          196 MKRRGF-ICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVG  274 (423)
Q Consensus       196 m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~  274 (423)
                      .-+... ..-...|....-.|.+.+++..|..-|+...... +-|...|..+..+|.+.|.+..|.++|.+....... +
T Consensus       552 ~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~-s  629 (1238)
T KOG1127|consen  552 AAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL-S  629 (1238)
T ss_pred             HhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH-h
Confidence            322210 0012233344555667788888888888877664 447778888888888888888888888877764322 1


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507          275 SEVYKALLRGYSMNGNSEGAQRVFEAIQ  302 (423)
Q Consensus       275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~  302 (423)
                      ...-.-..-..+..|.+.+|...+....
T Consensus       630 ~y~~fk~A~~ecd~GkYkeald~l~~ii  657 (1238)
T KOG1127|consen  630 KYGRFKEAVMECDNGKYKEALDALGLII  657 (1238)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            1111222234566778888877776654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.12  E-value=0.0024  Score=43.00  Aligned_cols=52  Identities=21%  Similarity=0.161  Sum_probs=25.5

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          182 KKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      +.|++++|.++|+.+.+.... +...+..+..+|.+.|++++|..+++++...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            345555555555555444222 4444445555555555555555555555543

...

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.10  E-value=0.12  Score=50.47  Aligned_cols=117  Identities=14%  Similarity=0.120  Sum_probs=92.3

Q ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014507          273 VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALIL  352 (423)
Q Consensus       273 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  352 (423)
                      ...-+.+--+.-+...|+..+|.++-.+.+    .||...|-.=+.+++..++|++-+++-+.++.      +.-|.-++
T Consensus       682 f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFV  751 (829)
T KOG2280|consen  682 FVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFV  751 (829)
T ss_pred             cccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHH
Confidence            344456666777788899999999998888    79999999999999999999998887666542      35577789


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          353 SACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       353 ~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      .+|.+.|+.++|.+++.+.     .+..    -.+.+|.+.|++.+|.++--+=++
T Consensus       752 e~c~~~~n~~EA~KYiprv-----~~l~----ekv~ay~~~~~~~eAad~A~~~rd  798 (829)
T KOG2280|consen  752 EACLKQGNKDEAKKYIPRV-----GGLQ----EKVKAYLRVGDVKEAADLAAEHRD  798 (829)
T ss_pred             HHHHhcccHHHHhhhhhcc-----CChH----HHHHHHHHhccHHHHHHHHHHhcC
Confidence            9999999999999998653     2222    678889999999998887554433

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.09  E-value=0.045  Score=41.44  Aligned_cols=55  Identities=16%  Similarity=0.101  Sum_probs=24.7

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 014507          214 MYSKAGNLKMAEETFEEIKLLGEPLD--KRSYGSMVMAYVRAGMLDRGEVLLREMDA  268 (423)
Q Consensus       214 ~~~~~g~~~~A~~~~~~m~~~g~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~  268 (423)
                      ++-..|+.++|+.+|++....|...+  ...+-.+.+++...|++++|..++++...
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            33344455555555555544443322  12333444444445555555555544443

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.08  E-value=0.018  Score=45.60  Aligned_cols=58  Identities=19%  Similarity=0.259  Sum_probs=28.0

Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          278 YKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       278 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  336 (423)
                      ...++..+...|++++|.++.+.+.... +-|...|..+|.+|...|+..+|.+.|+.+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3344444455555555555555555432 224445555555555555555555555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.03  E-value=0.0026  Score=42.83  Aligned_cols=50  Identities=20%  Similarity=0.262  Sum_probs=21.0

Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          288 NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       288 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      .|++++|.++|+.+.... +-+...+..+..+|.+.|++++|.++++.+..
T Consensus         4 ~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRN-PDNPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHT-TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444444444444331 11333444444444444444444444444443

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.03  E-value=0.012  Score=51.00  Aligned_cols=100  Identities=18%  Similarity=0.160  Sum_probs=67.1

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 014507          214 MYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEG  293 (423)
Q Consensus       214 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  293 (423)
                      -..+.+++.+|+..|.+.++.. +-|.+-|..-..+|.+.|.++.|++=.+.....+.. -..+|..|-.+|...|++++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHHH
Confidence            3556677777777777777753 345666667777777777777777766666664332 34577777777777777777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHH
Q 014507          294 AQRVFEAIQFAGITPDARMCALLI  317 (423)
Q Consensus       294 a~~~~~~m~~~g~~p~~~~~~~li  317 (423)
                      |.+.|++..+  +.|+-.+|-.=+
T Consensus       168 A~~aykKaLe--ldP~Ne~~K~nL  189 (304)
T KOG0553|consen  168 AIEAYKKALE--LDPDNESYKSNL  189 (304)
T ss_pred             HHHHHHhhhc--cCCCcHHHHHHH
Confidence            7777777665  366666554433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=97.02  E-value=0.22  Score=44.28  Aligned_cols=222  Identities=11%  Similarity=0.025  Sum_probs=131.7

Q ss_pred             HHccCCHHHHHHHHHHHHHcC--CCCCH------HHHHHHHHHHHHcC-CHHHHHHHHHHHHHc--------CCCCCH--
Q 014507          180 YGKKMQIQNAENTLLAMKRRG--FICDQ------VTLTVMVVMYSKAG-NLKMAEETFEEIKLL--------GEPLDK--  240 (423)
Q Consensus       180 ~~~~~~~~~a~~~~~~m~~~g--~~p~~------~~~~~li~~~~~~g-~~~~A~~~~~~m~~~--------g~~~~~--  240 (423)
                      ..+.|+++.|..++.+....-  ..|+.      ..|+.-... ...+ +++.|..++++..+.        ...|+.  
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~e   81 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSE   81 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHH
Confidence            457899999999999887653  23322      233433333 3455 888887777665442        123333  


Q ss_pred             ---HHHHHHHHHHHHcCChhH---HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507          241 ---RSYGSMVMAYVRAGMLDR---GEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA  314 (423)
Q Consensus       241 ---~~~~~li~~~~~~~~~~~---a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  314 (423)
                         .++..++.+|...+..+.   |.++++.+...... ....+..-+..+.+.++.+.+.+++..|...- .-....+.
T Consensus        82 lr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~  159 (278)
T PF08631_consen   82 LRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFD  159 (278)
T ss_pred             HHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHH
Confidence               467788888888877554   55566666544332 34566666777777999999999999999752 21334455


Q ss_pred             HHHHHH---HHcCCHHHHHHHHHHHHHCCCCCCHH-HHHH----HHHHHHHcC------CHHHHHHHHHHHHHC-CCCcC
Q 014507          315 LLINAY---QMAGQSQKAYTAFQNMRKAGLEPSDK-CVAL----ILSACEKEN------QLNRALEFLIDLERD-GFMVG  379 (423)
Q Consensus       315 ~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~----li~~~~~~g------~~~~a~~~~~~m~~~-g~~~~  379 (423)
                      .++..+   ... ....|...+..+....+.|... ....    .+....+.+      +++...++++...+. +.+.+
T Consensus       160 ~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls  238 (278)
T PF08631_consen  160 SILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLS  238 (278)
T ss_pred             HHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCC
Confidence            555544   443 3456777777776655555543 1111    111122222      245555666644443 44455


Q ss_pred             HHHHHHHHH-------HHHHcCCHHHHHHHHHH
Q 014507          380 KEASCTLAA-------WFKRLGVVEEVEHVLRE  405 (423)
Q Consensus       380 ~~~~~~l~~-------~~~~~g~~~~A~~~~~~  405 (423)
                      ..+-.++..       .+.+.+++++|.+.|+-
T Consensus       239 ~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~  271 (278)
T PF08631_consen  239 AEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL  271 (278)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            555444433       34578999999999873

It is also involved in sporulation [].

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.01  E-value=0.017  Score=50.07  Aligned_cols=102  Identities=18%  Similarity=0.157  Sum_probs=84.8

Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHH
Q 014507          249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQ  327 (423)
Q Consensus       249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~  327 (423)
                      -..+.+++.+|+..|.+.++.... |.+-|..-..+|.+.|.++.|.+=-+.....  .| ...+|..|-.+|...|+++
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i--Dp~yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSI--DPHYSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhc--ChHHHHHHHHHHHHHHccCcHH
Confidence            366789999999999999997654 7788888899999999999999888877764  34 5678999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507          328 KAYTAFQNMRKAGLEPSDKCVALILSAC  355 (423)
Q Consensus       328 ~a~~~~~~m~~~~~~p~~~~~~~li~~~  355 (423)
                      +|.+.|+...+  +.|+-.+|-.=+...
T Consensus       167 ~A~~aykKaLe--ldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  167 EAIEAYKKALE--LDPDNESYKSNLKIA  192 (304)
T ss_pred             HHHHHHHhhhc--cCCCcHHHHHHHHHH
Confidence            99999998877  778877776655543

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.00  E-value=0.17  Score=42.64  Aligned_cols=59  Identities=14%  Similarity=0.045  Sum_probs=33.5

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          176 IIHGYGKKMQIQNAENTLLAMKRRGFI--CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       176 li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      ....+...|++++|.+.|+.+...-..  --....-.++.++.+.|+++.|...++++.+.
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~   71 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL   71 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344455667777777777777665221  11233444566667777777777777776654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=0.049  Score=46.36  Aligned_cols=132  Identities=11%  Similarity=0.034  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-----
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM-----  246 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-----  246 (423)
                      +.+.+++.+.-.+.+.-...++.+..+...+.++.....+++.-.+.||.+.|...|++..+..-+.|..+++.+     
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            344556666666677777777777777655556666677777777777777777777766554333333333332     


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507          247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA  304 (423)
Q Consensus       247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  304 (423)
                      ...|.-.+++..|...+.+....+-. |....|.-.-+..-.|+..+|.+.++.|...
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            23344456666666667666665433 4444444444444456777777777777764

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.94  E-value=0.042  Score=52.59  Aligned_cols=241  Identities=11%  Similarity=-0.008  Sum_probs=128.7

Q ss_pred             HHHHHHhccCCCCCHHHHHHHHHHh-----------cCCChhhHHHHHHHHHhcCCchHHHHH--HHHHhhcccCCCHHH
Q 014507          106 FVKQIICVSPETGNLSDLLAAWVRF-----------MKPRRADWLAVLKQLKLMEHPLYLQVA--ELALLEESFEANIRD  172 (423)
Q Consensus       106 ~~~~ll~~~~~~g~~~~a~~~~~~~-----------~~p~~~~~~~ll~~~~~~~~~~~a~~~--~~~~~~~~~~~~~~~  172 (423)
                      .+.+=+..|...|.+++|.++---+           ...+.-.++..-++|.+..+...-+.+  ++.+.+.|-.|+...
T Consensus       558 p~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL  637 (1081)
T KOG1538|consen  558 PQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAMEALEALDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL  637 (1081)
T ss_pred             cccccchhhhhccchhhhhcccccceecchHHHHHHHHHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH
Confidence            3455566777888888887653322           122334455566677766665444333  345666777677654


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH------------HHHHH--cCCCC
Q 014507          173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETF------------EEIKL--LGEPL  238 (423)
Q Consensus       173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~------------~~m~~--~g~~~  238 (423)
                         +...++-.|.+.+|-++|.+-   |..      |..+..|...+.+|.|.++.            ++-.+  ..++-
T Consensus       638 ---lA~~~Ay~gKF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~ke  705 (1081)
T KOG1538|consen  638 ---LADVFAYQGKFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKE  705 (1081)
T ss_pred             ---HHHHHHhhhhHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCC
Confidence               345566678888888887653   322      11233333444444443333            22111  11111


Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHH------HHhCCCC---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC
Q 014507          239 DKRSYGSMVMAYVRAGMLDRGEVLLRE------MDAQEVY---VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD  309 (423)
Q Consensus       239 ~~~~~~~li~~~~~~~~~~~a~~~~~~------m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~  309 (423)
                      ..    +....+...|+.++|..+.-+      +.+.+-.   .+..+...+..-+.+...+.-|-++|..|-..     
T Consensus       706 Pk----aAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~-----  776 (1081)
T KOG1538|consen  706 PK----AAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL-----  776 (1081)
T ss_pred             cH----HHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH-----
Confidence            11    122333445666665544321      1121111   13334445555555666777788888777632     


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          310 ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDK-----------CVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       310 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-----------~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                          ..+++.....++|.+|..+-+...+  +.||..           -|.-.-.+|.+.|+-.+|..+++++..
T Consensus       777 ----ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  777 ----KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             ----HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence                3566777888889998888877654  334321           233444556666666666666666544

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.89  E-value=0.0062  Score=40.54  Aligned_cols=54  Identities=15%  Similarity=0.154  Sum_probs=24.5

Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      .+.+.|++++|.+.|+.+.+.. +-+...+..+..++...|++++|...|++..+
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444455555555555544432 11334444444444555555555555544443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.86  E-value=0.18  Score=40.76  Aligned_cols=130  Identities=13%  Similarity=0.064  Sum_probs=70.9

Q ss_pred             CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCCHHHH
Q 014507          237 PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG---ITPDARMC  313 (423)
Q Consensus       237 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~~~~~  313 (423)
                      .|++..--.|..+..+.|+..+|...|++....-..-|....-.+.++....+++..|...++++.+..   -.||  +.
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~  163 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GH  163 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--ch
Confidence            455555556666666666666666666666554444455555666666666666666666666655532   1222  23


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          314 ALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLID  370 (423)
Q Consensus       314 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  370 (423)
                      -.+.+.+...|.+..|..-|+.....  -|+...-......+.+.|+.+++..-+.+
T Consensus       164 Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~  218 (251)
T COG4700         164 LLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVA  218 (251)
T ss_pred             HHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHH
Confidence            34455666666666666666666552  34333322233344555555544443333

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=96.86  E-value=0.18  Score=42.51  Aligned_cols=179  Identities=15%  Similarity=0.126  Sum_probs=99.1

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014507          210 VMVVMYSKAGNLKMAEETFEEIKLLGE--PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM  287 (423)
Q Consensus       210 ~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  287 (423)
                      .....+...|++++|.+.|+++...-.  +--....-.++.++.+.|+++.|...+++..+.-..-...-+...+.+.+.
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~   89 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY   89 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence            345556788999999999999987531  122345667788888999999999999998775332222223333333222


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507          288 NGNSEGAQRVFEAIQFAGITPD-------ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ  360 (423)
Q Consensus       288 ~g~~~~a~~~~~~m~~~g~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  360 (423)
                      ........       .  ...|       ...+..+|.-|=......+|...+..+.+.   .-..- -.+..-|.+.|.
T Consensus        90 ~~~~~~~~-------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e-~~ia~~Y~~~~~  156 (203)
T PF13525_consen   90 YKQIPGIL-------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHE-LYIARFYYKRGK  156 (203)
T ss_dssp             HHHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHH-HHHHHHHHCTT-
T ss_pred             HHhCccch-------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHH-HHHHHHHHHccc
Confidence            11111110       0  0111       123444455555555556665555555431   11111 235666888888


Q ss_pred             HHHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 014507          361 LNRALEFLIDLERD--GFMVGKEASCTLAAWFKRLGVVEEVEH  401 (423)
Q Consensus       361 ~~~a~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~  401 (423)
                      +..|..-++.+.+.  +.+........++.+|.+.|..+.|..
T Consensus       157 y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  157 YKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            88888888888875  222234556778888888888875543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.83  E-value=0.0069  Score=40.33  Aligned_cols=54  Identities=7%  Similarity=-0.018  Sum_probs=25.2

Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          179 GYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL  233 (423)
Q Consensus       179 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  233 (423)
                      .+.+.|++++|.+.|+++.+.... +...+..+...+...|++++|...|++..+
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344445555555555555444321 344444444555555555555555554443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.80  E-value=0.0086  Score=40.39  Aligned_cols=61  Identities=15%  Similarity=0.085  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG-NLKMAEETFEEIK  232 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~  232 (423)
                      ..|..+...+...|++++|+..|++..+.... +...|..+..+|...| ++++|++.|++..
T Consensus         4 ~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al   65 (69)
T PF13414_consen    4 EAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL   65 (69)
T ss_dssp             HHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence            34444444555555555555555554444222 3444444444455554 3555555544443

...

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.71  E-value=0.44  Score=43.11  Aligned_cols=88  Identities=11%  Similarity=0.043  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 014507          311 RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWF  390 (423)
Q Consensus       311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~  390 (423)
                      .+.+..|.-+...|+...|.++-.+..    .||..-|..-+.+++..+++++..++...    .  -++.-|..++++|
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~~~  247 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVEAC  247 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHHHH
Confidence            456667788888999999999877775    48999999999999999999987776542    1  2345688999999


Q ss_pred             HHcCCHHHHHHHHHHhcc
Q 014507          391 KRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       391 ~~~g~~~~A~~~~~~m~~  408 (423)
                      .+.|+..+|..++.+++.
T Consensus       248 ~~~~~~~eA~~yI~k~~~  265 (319)
T PF04840_consen  248 LKYGNKKEASKYIPKIPD  265 (319)
T ss_pred             HHCCCHHHHHHHHHhCCh
Confidence            999999999999988654

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.70  E-value=0.057  Score=41.32  Aligned_cols=99  Identities=14%  Similarity=0.187  Sum_probs=54.7

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507          274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILS  353 (423)
Q Consensus       274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  353 (423)
                      |..++..+|.++++.|+++....+++..-.  +..+...         ..+.         --....+.|+..+..+++.
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~Wg--I~~~~~~---------~~~~---------~~~~spl~Pt~~lL~AIv~   60 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWG--IDVNGKK---------KEGD---------YPPSSPLYPTSRLLIAIVH   60 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcC--CCCCCcc---------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence            456777888888888888887777765432  1111000         0000         0011234566666666666


Q ss_pred             HHHHcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHH
Q 014507          354 ACEKENQLNRALEFLIDLERD-GFMVGKEASCTLAAWFKR  392 (423)
Q Consensus       354 ~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~  392 (423)
                      +|+..|++..|.++++...+. +++.+..+|..|++-...
T Consensus        61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v  100 (126)
T PF12921_consen   61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYV  100 (126)
T ss_pred             HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence            666666666666666665543 555556666666655443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.70  E-value=0.24  Score=40.04  Aligned_cols=133  Identities=10%  Similarity=0.016  Sum_probs=88.5

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC---CCCCHHH
Q 014507          201 FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE---VYVGSEV  277 (423)
Q Consensus       201 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~  277 (423)
                      ..|++...-.|..+....|+..+|...|++....-...|....-.+..+....+++..+..+++++.+..   -.||  +
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~  162 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G  162 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence            4566666667778888888888888888877765556677777777777777888888888887777643   2344  3


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          278 YKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMR  337 (423)
Q Consensus       278 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  337 (423)
                      .-.+...+...|..++|+.-|+.....  -|+...--..-..+.+.|+.+++..-+.++.
T Consensus       163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            445566777778888888888877765  3444333333334466676666655544443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.69  E-value=0.012  Score=39.58  Aligned_cols=64  Identities=19%  Similarity=0.250  Sum_probs=38.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-ChhHHHHHHHHHHh
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG-MLDRGEVLLREMDA  268 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~  268 (423)
                      +..+|..+...+...|++++|+..|.+..+.. +-+...|..+..+|...| ++++|.+.+++..+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            34556666666666666666666666666653 234555666666666666 56666666665544

...

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.67  E-value=0.044  Score=41.96  Aligned_cols=100  Identities=13%  Similarity=0.151  Sum_probs=68.6

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507          239 DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLIN  318 (423)
Q Consensus       239 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~  318 (423)
                      |..++..+|.++++.|+.+....+++..-.-++....           ..+.         .-......|+..+..+++.
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~-----------~~~~---------~~~~spl~Pt~~lL~AIv~   60 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKK-----------KEGD---------YPPSSPLYPTSRLLIAIVH   60 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCcc-----------ccCc---------cCCCCCCCCCHHHHHHHHH
Confidence            5678999999999999999999998765432222100           0000         1112345678888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHc
Q 014507          319 AYQMAGQSQKAYTAFQNMRK-AGLEPSDKCVALILSACEKE  358 (423)
Q Consensus       319 ~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~  358 (423)
                      +|+..|++..|+++.+...+ .+++.+..+|..|+.-+...
T Consensus        61 sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~  101 (126)
T PF12921_consen   61 SFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVL  101 (126)
T ss_pred             HHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence            88888888888888887765 46766777787777755443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.66  E-value=0.036  Score=48.55  Aligned_cols=97  Identities=12%  Similarity=0.067  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCCHHHHH
Q 014507          276 EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDA----RMCALLINAYQMAGQSQKAYTAFQNMRKAG--LEPSDKCVA  349 (423)
Q Consensus       276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~p~~~~~~  349 (423)
                      ..|...+..+.+.|++++|...|+.+.+.  .|+.    ..+..+..+|...|++++|...|+.+.+.-  -......+.
T Consensus       144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~--yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        144 TDYNAAIALVQDKSRQDDAIVAFQNFVKK--YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            34555555556667777777777777764  3432    455566677777777777777777776521  011133444


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          350 LILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       350 ~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      .+...+...|+.+.|..+++++.+.
T Consensus       222 klg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        222 KVGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            4555566677777777777776664

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.64  E-value=0.029  Score=44.46  Aligned_cols=73  Identities=18%  Similarity=0.161  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcCHHHHH
Q 014507          311 RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER-----DGFMVGKEASC  384 (423)
Q Consensus       311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~  384 (423)
                      .....++..+...|++++|..+.+.+.... +.|...|..+|.++...|+...|.+.|+++.+     .|+.|+..+-.
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            345667778889999999999999998853 44788999999999999999999999998753     39999887654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.22  Score=43.58  Aligned_cols=101  Identities=17%  Similarity=0.134  Sum_probs=53.8

Q ss_pred             CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHHCCCCCCHHHH
Q 014507          237 PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG---NSEGAQRVFEAIQFAGITPDARMC  313 (423)
Q Consensus       237 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~  313 (423)
                      +-|...|-.|...|...|+.+.|..-|....+...+ +...+..+..++....   ...++.++|+++.... .-|+.+-
T Consensus       153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D-~~~iral  230 (287)
T COG4235         153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALD-PANIRAL  230 (287)
T ss_pred             CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcC-CccHHHH
Confidence            345556666666666666666666666665553221 3444444443333221   2335666666666542 2244455


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          314 ALLINAYQMAGQSQKAYTAFQNMRKA  339 (423)
Q Consensus       314 ~~li~~~~~~g~~~~a~~~~~~m~~~  339 (423)
                      ..+...+...|++.+|...|+.|.+.
T Consensus       231 ~lLA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         231 SLLAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhc
Confidence            55555666666666666666666654

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.57  E-value=0.019  Score=49.20  Aligned_cols=117  Identities=11%  Similarity=0.167  Sum_probs=59.1

Q ss_pred             CCCHHHHHHHHHHHHc-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 014507          167 EANIRDYTKIIHGYGK-----KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKR  241 (423)
Q Consensus       167 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~  241 (423)
                      +.|..+|-..+..+..     .+.++-....++.|.+.|+.-|..+|+.|++.+-+-.-                .|. .
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkf----------------iP~-n  126 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKF----------------IPQ-N  126 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCccccc----------------ccH-H
Confidence            4455555555544432     24455555555566666666666666666555432211                010 0


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH-HHHHHHHHHHH
Q 014507          242 SYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS-EGAQRVFEAIQ  302 (423)
Q Consensus       242 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~  302 (423)
                      .+....-.|-+  +-+-+.+++++|...|+.||..+-..|++++.+.+-. .+..++.-.|.
T Consensus       127 vfQ~~F~HYP~--QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP  186 (406)
T KOG3941|consen  127 VFQKVFLHYPQ--QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP  186 (406)
T ss_pred             HHHHHHhhCch--hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence            11111111111  2234667777777777777777777777777776643 23444444443

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.53  E-value=0.083  Score=46.32  Aligned_cols=96  Identities=9%  Similarity=-0.013  Sum_probs=42.1

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHH
Q 014507          173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICD--QVTLTVMVVMYSKAGNLKMAEETFEEIKLLG--EPLDKRSYGSMVM  248 (423)
Q Consensus       173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~  248 (423)
                      |...+....+.|++++|...|+.+.+.-+...  ...+-.+...|...|++++|...|+.+.+.-  -+.....+-.+..
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            33333333444555555555555554421110  1233444555555555555555555554321  0111222333334


Q ss_pred             HHHHcCChhHHHHHHHHHHh
Q 014507          249 AYVRAGMLDRGEVLLREMDA  268 (423)
Q Consensus       249 ~~~~~~~~~~a~~~~~~m~~  268 (423)
                      .+...|+.+.|..+|+++.+
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            44445555555555555444

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=96.46  E-value=0.66  Score=42.12  Aligned_cols=291  Identities=12%  Similarity=0.018  Sum_probs=190.1

Q ss_pred             HHHHHHhccC--CCCCHHHHHHHHHHh---cCCChhhHHHHHHHHHh--cCCchHHHHHHHHHhhcccCCCHHHHHHHHH
Q 014507          106 FVKQIICVSP--ETGNLSDLLAAWVRF---MKPRRADWLAVLKQLKL--MEHPLYLQVAELALLEESFEANIRDYTKIIH  178 (423)
Q Consensus       106 ~~~~ll~~~~--~~g~~~~a~~~~~~~---~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  178 (423)
                      .|..|-.++.  -.|+-..|.++-.+.   +..|......++.+=..  .|+.+.+.+-|+.|...- +.-.--...|.-
T Consensus        84 gyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dP-EtRllGLRgLyl  162 (531)
T COG3898          84 GYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDP-ETRLLGLRGLYL  162 (531)
T ss_pred             HHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcCh-HHHHHhHHHHHH
Confidence            3555544443  457777787777664   56777777777775543  799999999999987641 111111233344


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHH--HHHHHHHHHH---
Q 014507          179 GYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG-EPLDKRS--YGSMVMAYVR---  252 (423)
Q Consensus       179 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~--~~~li~~~~~---  252 (423)
                      ..-+.|+.+.|.+.-+..-..-.. -...+...+...+..|+++.|+++.+.-++.. +.+++.-  -..|+.+-..   
T Consensus       163 eAqr~GareaAr~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~l  241 (531)
T COG3898         163 EAQRLGAREAARHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLL  241 (531)
T ss_pred             HHHhcccHHHHHHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHh
Confidence            445778999998888887665332 35678889999999999999999998877643 4455432  2233333221   


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHH-HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507          253 AGMLDRGEVLLREMDAQEVYVGSE-VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYT  331 (423)
Q Consensus       253 ~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  331 (423)
                      ..|...|...-.+..+  +.||.. .-..-..++.+.|+..++-.+++.+-+.  .|....+...+  +.+.|  +.+..
T Consensus       242 dadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~--ePHP~ia~lY~--~ar~g--dta~d  313 (531)
T COG3898         242 DADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA--EPHPDIALLYV--RARSG--DTALD  313 (531)
T ss_pred             cCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc--CCChHHHHHHH--HhcCC--CcHHH
Confidence            2344555555444444  344432 2334457889999999999999999987  45555443333  23444  44555


Q ss_pred             HHHHHHH-CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH-cCCHHHHHHHHHHhcc
Q 014507          332 AFQNMRK-AGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR-LGVVEEVEHVLREYGL  408 (423)
Q Consensus       332 ~~~~m~~-~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~m~~  408 (423)
                      -+++..+ ..++|| ..+-..+..+-...|++..|..--+...+  ..|....|-.|.+.-.- .|+-.++.+.+-+-..
T Consensus       314 RlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~  391 (531)
T COG3898         314 RLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVK  391 (531)
T ss_pred             HHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhc
Confidence            5555544 235665 56777778888889999888777666555  56888888888877654 4999999888776543

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.43  E-value=0.74  Score=42.27  Aligned_cols=165  Identities=13%  Similarity=0.040  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 014507          208 LTVMVVMYSKAGNLKMAEETFEEIKLLG---EPLDKRSYGSMVMAYVR---AGMLDRGEVLLREMDAQEVYVGSEVYKAL  281 (423)
Q Consensus       208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  281 (423)
                      ...++-+|-...+++...++.+.+...-   +.-+...-....-++-+   .|+.++|.+++..+......++..+|..+
T Consensus       144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~  223 (374)
T PF13281_consen  144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLL  223 (374)
T ss_pred             HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHH
Confidence            3345556788888888888888887641   11122222233344455   77888888888886665566677788777


Q ss_pred             HHHHHhC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HH---HHHHHH---HHH-HHCCC---
Q 014507          282 LRGYSMN---------GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ-SQ---KAYTAF---QNM-RKAGL---  341 (423)
Q Consensus       282 i~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~---~a~~~~---~~m-~~~~~---  341 (423)
                      ...|-..         ...++|...|.+.-+.  .||..+=-.+...+...|. .+   +..++-   ..+ .+.|.   
T Consensus       224 GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~  301 (374)
T PF13281_consen  224 GRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEK  301 (374)
T ss_pred             HHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccc
Confidence            6665431         1345566666554432  2432221111111122222 21   222222   111 12222   


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          342 EPSDKCVALILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       342 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      ..|---+..++.++.-.|+.++|.+..++|.+.
T Consensus       302 ~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  302 MQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            233445566677777777777777777777764

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.32  E-value=0.59  Score=40.08  Aligned_cols=132  Identities=10%  Similarity=0.048  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH----
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALL----  282 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li----  282 (423)
                      +.+.++..+.-.|.+.-....+++..+...+.++.....|++.-.+.||.+.|...|++..+..-..|..+++.++    
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            4455666666667777777777777776555566667777777777777777777777666543333333333332    


Q ss_pred             -HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          283 -RGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA  339 (423)
Q Consensus       283 -~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  339 (423)
                       ..|.-.+++..|...+.+..... ..|...-|.=.-+..-.|+..+|.+.++.|.+.
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D-~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~  315 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMD-PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ  315 (366)
T ss_pred             hhheecccchHHHHHHHhhccccC-CCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence             33444556666666666666542 224444444444444456777777777777663

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.21  E-value=0.048  Score=37.13  Aligned_cols=54  Identities=15%  Similarity=0.098  Sum_probs=24.4

Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      .|.+.+++++|.++++.+...+ +.+...|.....++...|++++|.+.|+...+
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            3444444444444444444432 12333444444444444555555554444443

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.19  E-value=0.026  Score=39.10  Aligned_cols=24  Identities=17%  Similarity=0.297  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          313 CALLINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       313 ~~~li~~~~~~g~~~~a~~~~~~m  336 (423)
                      |+.+...|...|++++|++.|++.
T Consensus         8 ~~~la~~~~~~~~~~~A~~~~~~a   31 (78)
T PF13424_consen    8 YNNLARVYRELGRYDEALDYYEKA   31 (78)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHH
Confidence            444444444444444444444443

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.18  E-value=0.42  Score=41.88  Aligned_cols=98  Identities=14%  Similarity=0.064  Sum_probs=42.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCCCHHHHHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG---MLDRGEVLLREMDAQEVYVGSEVYKA  280 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~  280 (423)
                      |...|-.|...|...|+++.|..-|.+..+.. .++...+..+..++....   +..++..+|+++...+.. |..+-..
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence            44444444444444444444444444444432 223333333333332221   223344444444443322 3344444


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHH
Q 014507          281 LLRGYSMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       281 li~~~~~~g~~~~a~~~~~~m~~  303 (423)
                      |...+...|++.+|...|+.|.+
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~  255 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLD  255 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHh
Confidence            44444444444444444444444

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.15  E-value=0.33  Score=43.39  Aligned_cols=130  Identities=13%  Similarity=0.208  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----ChhHHHHHHHHHHhCCC---CCCHHHHHHHHHHHHhCCC-
Q 014507          221 LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR--AG----MLDRGEVLLREMDAQEV---YVGSEVYKALLRGYSMNGN-  290 (423)
Q Consensus       221 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--~~----~~~~a~~~~~~m~~~~~---~p~~~~~~~li~~~~~~g~-  290 (423)
                      +++...+++.|.+.|+..+..+|-+.......  ..    ....+..+|+.|++...   .++...+..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            44567777778888777776665543333222  12    24457788888887543   2344556666544  3333 


Q ss_pred             ---HHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014507          291 ---SEGAQRVFEAIQFAGITPD-A-RMCALLINAYQMAGQ--SQKAYTAFQNMRKAGLEPSDKCVALIL  352 (423)
Q Consensus       291 ---~~~a~~~~~~m~~~g~~p~-~-~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li  352 (423)
                         .+.++.+|+.+.+.|+..+ . ...+.++...-....  ..++.++++.+.+.|+++....|..+.
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence               3567777888888777663 2 333333332222222  447788888888888887776665543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.14  E-value=1.6  Score=43.17  Aligned_cols=287  Identities=10%  Similarity=0.036  Sum_probs=166.9

Q ss_pred             HHHHHhccCCCCCHHHHHHHHHHhcCCC---hhhHHHHHHHHHhcCCch--HH-HHHHHHHhhcccCCCHHHHHHHHHHH
Q 014507          107 VKQIICVSPETGNLSDLLAAWVRFMKPR---RADWLAVLKQLKLMEHPL--YL-QVAELALLEESFEANIRDYTKIIHGY  180 (423)
Q Consensus       107 ~~~ll~~~~~~g~~~~a~~~~~~~~~p~---~~~~~~ll~~~~~~~~~~--~a-~~~~~~~~~~~~~~~~~~~~~li~~~  180 (423)
                      -..+|+-+...+.+..|+++-..+-.|.   ...|.....-+.+..+..  .+ ..+-..+ .... ..-.+|..+.+-.
T Consensus       440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kl-s~~~-~~~iSy~~iA~~A  517 (829)
T KOG2280|consen  440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKL-SAKL-TPGISYAAIARRA  517 (829)
T ss_pred             hhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHh-cccC-CCceeHHHHHHHH
Confidence            3446777788899999999988886666   345555555555543322  22 2222222 2222 3445677777777


Q ss_pred             HccCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----------CCCCHHHHHH
Q 014507          181 GKKMQIQNAENTLLAMKRRGFI----CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG-----------EPLDKRSYGS  245 (423)
Q Consensus       181 ~~~~~~~~a~~~~~~m~~~g~~----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~~~~~~~~~  245 (423)
                      ..+|+.+.|..+++.=...+-.    .+..-+...+.-+...|+.+....++-.+...-           .+.....|.-
T Consensus       518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~  597 (829)
T KOG2280|consen  518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQ  597 (829)
T ss_pred             HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHH
Confidence            7899999999888754433211    122345566777778888887777776665421           1111122222


Q ss_pred             HHHH--------HHHcCChhHHHHHH--HHHHh----CCCCCCHHHHHHHHHHHHhCCCHH----------HHHHHHHHH
Q 014507          246 MVMA--------YVRAGMLDRGEVLL--REMDA----QEVYVGSEVYKALLRGYSMNGNSE----------GAQRVFEAI  301 (423)
Q Consensus       246 li~~--------~~~~~~~~~a~~~~--~~m~~----~~~~p~~~~~~~li~~~~~~g~~~----------~a~~~~~~m  301 (423)
                      +++-        +...++-..+...|  +...+    .+..|   ......+.|.+.....          +-+.+.+.+
T Consensus       598 ~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~---~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~L  674 (829)
T KOG2280|consen  598 FMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIP---ALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTL  674 (829)
T ss_pred             HHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccch---hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            2221        01111111111111  11101    12222   2233334444443311          122222233


Q ss_pred             HH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH
Q 014507          302 QF-AGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGK  380 (423)
Q Consensus       302 ~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~  380 (423)
                      .. .|..-..-+.+--+.-+...|+-.+|.++-.+.+    -||...|..=+.+++..+++++.+++-+.++.      +
T Consensus       675 e~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------P  744 (829)
T KOG2280|consen  675 EDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------P  744 (829)
T ss_pred             HHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------C
Confidence            22 2333344455666777788899999999988876    58989999999999999999987777665442      3


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          381 EASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      .-|.-++..|.+.|+.++|.+++.+...
T Consensus       745 IGy~PFVe~c~~~~n~~EA~KYiprv~~  772 (829)
T KOG2280|consen  745 IGYLPFVEACLKQGNKDEAKKYIPRVGG  772 (829)
T ss_pred             CCchhHHHHHHhcccHHHHhhhhhccCC
Confidence            3466788999999999999999876643

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.98  E-value=0.064  Score=36.48  Aligned_cols=55  Identities=16%  Similarity=-0.021  Sum_probs=29.0

Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          179 GYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       179 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      .|.+.+++++|.++++.+...+.. +...|......+.+.|++++|.+.|+...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            344555555555555555555322 4444555555555555555555555555543

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.97  E-value=0.082  Score=45.53  Aligned_cols=103  Identities=17%  Similarity=0.337  Sum_probs=65.1

Q ss_pred             CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH
Q 014507          204 DQVTLTVMVVMYSKA-----GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVY  278 (423)
Q Consensus       204 ~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  278 (423)
                      |..+|-+.+..+...     +..+-....++.|.+.|+..|..+|+.|++.+-+-.                ..|.. .+
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgk----------------fiP~n-vf  128 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGK----------------FIPQN-VF  128 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccc----------------cccHH-HH
Confidence            666777666666543     445666666777777777777777777776654321                11111 11


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507          279 KALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ  325 (423)
Q Consensus       279 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  325 (423)
                      ....-.|=  .+-+-+..++++|...|+-||..+-..++.++.+.+.
T Consensus       129 Q~~F~HYP--~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  129 QKVFLHYP--QQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHhhCc--hhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            11111111  2334578889999999999999988888888877664

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.96  E-value=0.55  Score=45.17  Aligned_cols=164  Identities=16%  Similarity=0.158  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCC-----HHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHH
Q 014507          243 YGSMVMAYVRAGMLDRGEVLLREMDAQE-VYVG-----SEVYKALLRGYSM----NGNSEGAQRVFEAIQFAGITPDARM  312 (423)
Q Consensus       243 ~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~  312 (423)
                      +..+++...=.||-+.+++.+.+..+.+ +.-.     .-.|+..+..++.    ..+.+.|.++++.+...  -|+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHH
Confidence            3445555566788888888887766532 2211     1245555554443    45678899999999875  677776


Q ss_pred             HHHHH-HHHHHcCCHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHH-HH
Q 014507          313 CALLI-NAYQMAGQSQKAYTAFQNMRKA--GL-EPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCT-LA  387 (423)
Q Consensus       313 ~~~li-~~~~~~g~~~~a~~~~~~m~~~--~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~-l~  387 (423)
                      |...- +.+...|++++|.+.|++....  .. +.....+--+...+.-.+++++|.+.|..+.+.. ..+..+|.- ..
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a  347 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHH
Confidence            65543 5567789999999999976531  11 2234456666777788899999999999998862 123333332 33


Q ss_pred             HHHHHcCCH-------HHHHHHHHHhccc
Q 014507          388 AWFKRLGVV-------EEVEHVLREYGLR  409 (423)
Q Consensus       388 ~~~~~~g~~-------~~A~~~~~~m~~~  409 (423)
                      -++...|+.       ++|.++|++.+.-
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHHHH
Confidence            344567877       8899999887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.94  E-value=1.4  Score=40.92  Aligned_cols=357  Identities=10%  Similarity=0.011  Sum_probs=187.4

Q ss_pred             hhcCchhhHhhhhhcccccccc-cCCC-c-ceeeeeeccccchHHHHHHhcCChhhhhhh-HHHHHHHHh--ccCCCCCH
Q 014507           47 RSLRSGPALEAIKAEDMGKTQV-KDDT-S-MFTWIQIGPNITEEQKQAISQFPRKMTKRC-KAFVKQIIC--VSPETGNL  120 (423)
Q Consensus        47 ~~~~~~~a~~~~~~~~m~~~g~-~~~~-~-~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~ll~--~~~~~g~~  120 (423)
                      .++++++|..+  |.+..+..- .|.. . -..-+.++++|--+..+.......+..+.. ...|-.+..  .+-+.+.+
T Consensus        18 kq~~~~esEki--fskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~   95 (549)
T PF07079_consen   18 KQKKFQESEKI--FSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY   95 (549)
T ss_pred             HHhhhhHHHHH--HHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence            44567777666  666654322 2211 0 123355667776555544444444444311 122333332  22367888


Q ss_pred             HHHHHHHHHh------cC------------CChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccC----CCHHHHHHHHH
Q 014507          121 SDLLAAWVRF------MK------------PRRADWLAVLKQLKLMEHPLYLQVAELALLEESFE----ANIRDYTKIIH  178 (423)
Q Consensus       121 ~~a~~~~~~~------~~------------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~li~  178 (423)
                      ++|++.+..-      -+            +|-.--+.....+...|++.+++.+...+...-++    .+..+|+.++-
T Consensus        96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl  175 (549)
T PF07079_consen   96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL  175 (549)
T ss_pred             HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence            8887776432      11            22223345566778899999998888877665444    88888888665


Q ss_pred             HHHccC---------------CHHHHHHHHHHHHHc------CCCCCHHHH-----------------------------
Q 014507          179 GYGKKM---------------QIQNAENTLLAMKRR------GFICDQVTL-----------------------------  208 (423)
Q Consensus       179 ~~~~~~---------------~~~~a~~~~~~m~~~------g~~p~~~~~-----------------------------  208 (423)
                      .++++=               -++.+.-...+|...      .+.|.....                             
T Consensus       176 mlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~y  255 (549)
T PF07079_consen  176 MLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFY  255 (549)
T ss_pred             HHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhc
Confidence            555431               122333333333221      112221111                             


Q ss_pred             ---------HHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--
Q 014507          209 ---------TVMVVMYSKAGNLKMAEETFEEIKLLGEP----LDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV--  273 (423)
Q Consensus       209 ---------~~li~~~~~~g~~~~A~~~~~~m~~~g~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p--  273 (423)
                               ..+...+.+  +.+++..+-+.+....+.    .-..+|..++....+.++...|.+.+.-+.-.+...  
T Consensus       256 v~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp~~sv  333 (549)
T PF07079_consen  256 VHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDPRISV  333 (549)
T ss_pred             cCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCCcchh
Confidence                     112222211  334444444333322111    123467777777777777777777776655422110  


Q ss_pred             -----------------CHHHH------------------------HHHHH---HHHhCCC-HHHHHHHHHHHHHCCCCC
Q 014507          274 -----------------GSEVY------------------------KALLR---GYSMNGN-SEGAQRVFEAIQFAGITP  308 (423)
Q Consensus       274 -----------------~~~~~------------------------~~li~---~~~~~g~-~~~a~~~~~~m~~~g~~p  308 (423)
                                       |...|                        ..|+.   -+-+.|. -++|.++++.+..-. .-
T Consensus       334 s~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-~y  412 (549)
T PF07079_consen  334 SEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-NY  412 (549)
T ss_pred             hhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-cc
Confidence                             11111                        11111   1122233 556666666666531 12


Q ss_pred             CHHHHHHHHH----HHHH---cCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH--HHHcCCHHHHHHHHHHHHHCC
Q 014507          309 DARMCALLIN----AYQM---AGQSQKAYTAFQNMRKAGLEPSD----KCVALILSA--CEKENQLNRALEFLIDLERDG  375 (423)
Q Consensus       309 ~~~~~~~li~----~~~~---~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~--~~~~g~~~~a~~~~~~m~~~g  375 (423)
                      |..+-|.+..    +|.+   ...+.+-+.+-+-+.+.|+.|-.    ..-+.|..|  +...|++.++.-.-..+.+  
T Consensus       413 D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--  490 (549)
T PF07079_consen  413 DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--  490 (549)
T ss_pred             cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--
Confidence            4433333221    2222   12333444444444567877643    333444443  4568899888766666555  


Q ss_pred             CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507          376 FMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       376 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  410 (423)
                      +.|++.+|..+.-++....++++|.+++..++-++
T Consensus       491 iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~  525 (549)
T PF07079_consen  491 IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNE  525 (549)
T ss_pred             hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCch
Confidence            78999999999999999999999999999987644

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.92  E-value=0.027  Score=39.00  Aligned_cols=62  Identities=15%  Similarity=0.129  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CC-CcC-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          345 DKCVALILSACEKENQLNRALEFLIDLERD----GF-MVG-KEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       345 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      ..+|+.+...|...|++++|+..+++..+.    |- .|+ ..++..+..+|...|++++|.+++++-
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            457888999999999999999999988743    22 122 667889999999999999999999874

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.90  E-value=0.32  Score=46.19  Aligned_cols=158  Identities=15%  Similarity=0.134  Sum_probs=89.2

Q ss_pred             HHHHccCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 014507          178 HGYGKKMQIQNAENTLLAMK-RRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGML  256 (423)
Q Consensus       178 ~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~  256 (423)
                      ....-.++++++.+....-. -..+  ...-.+.++..+-+.|..+.|+.+-.+-.            .-.....+.|++
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L  334 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNL  334 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred             HHHHHcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence            34455677777777664111 1112  24456777777777888887776653321            123445567777


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          257 DRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       257 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  336 (423)
                      +.|.++.++.      .+...|..|.+...+.|+++-|++.|.+...         |..++-.|.-.|+.+...++.+..
T Consensus       335 ~~A~~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a  399 (443)
T PF04053_consen  335 DIALEIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIA  399 (443)
T ss_dssp             HHHHHHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             HHHHHHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHH
Confidence            7777654322      2566788888888888888888877776652         345666667777777777776666


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          337 RKAGLEPSDKCVALILSACEKENQLNRALEFLID  370 (423)
Q Consensus       337 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  370 (423)
                      ...|-      ++....++.-.|++++..+++.+
T Consensus       400 ~~~~~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  400 EERGD------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHTT-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHccC------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            65542      44455555566777777666643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.73  E-value=1.6  Score=40.08  Aligned_cols=168  Identities=14%  Similarity=0.048  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRG---FICDQVTLTVMVVMYSK---AGNLKMAEETFEEIKLLGEPLDKRSY  243 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~~  243 (423)
                      ..+...++-+|....+++...++++.+....   +.-+...-....-++.+   .|+.++|.+++..+......++..+|
T Consensus       141 ~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~  220 (374)
T PF13281_consen  141 PDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTL  220 (374)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHH
Confidence            3344456667889999999999999998762   11122333344556666   89999999999996666667889999


Q ss_pred             HHHHHHHHH---------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-H---HHHHHHH---H-HHHHCCC
Q 014507          244 GSMVMAYVR---------AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN-S---EGAQRVF---E-AIQFAGI  306 (423)
Q Consensus       244 ~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~---~~a~~~~---~-~m~~~g~  306 (423)
                      ..+...|-.         ....++|...|.+.-+..  ||.+.=-.+...+...|. .   .+..++-   . .+.++|.
T Consensus       221 gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~--~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~  298 (374)
T PF13281_consen  221 GLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE--PDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGS  298 (374)
T ss_pred             HHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC--ccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcc
Confidence            888887743         123667777777766543  443322122222222222 2   1233333   1 2223332


Q ss_pred             C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          307 T---PDARMCALLINAYQMAGQSQKAYTAFQNMRKA  339 (423)
Q Consensus       307 ~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  339 (423)
                      .   .|---+.+++.++.-.|+.++|.+..+.|.+.
T Consensus       299 ~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  299 LEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            2   24445678899999999999999999999875

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.71  E-value=0.49  Score=44.96  Aligned_cols=133  Identities=18%  Similarity=0.171  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      ....+.++..+-+.|..+.|+++..+-..+            .....+.|+++.|.++.++.      .+...|..|...
T Consensus       295 ~~~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~  356 (443)
T PF04053_consen  295 KDQGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKEL------DDPEKWKQLGDE  356 (443)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHH
Confidence            445777888888888888888776553332            44556778888887665443      366788888888


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507          250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKA  329 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  329 (423)
                      ..+.|+++-|++.|++..+         |..|+-.|.-.|+.+...++.+.....|-      +|....++.-.|+.++.
T Consensus       357 AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~c  421 (443)
T PF04053_consen  357 ALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQAALLLGDVEEC  421 (443)
T ss_dssp             HHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHH
T ss_pred             HHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHH
Confidence            8888888888888766543         56677777778888877777777776542      44555556666777777


Q ss_pred             HHHHHH
Q 014507          330 YTAFQN  335 (423)
Q Consensus       330 ~~~~~~  335 (423)
                      .+++.+
T Consensus       422 v~lL~~  427 (443)
T PF04053_consen  422 VDLLIE  427 (443)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.70  E-value=0.61  Score=43.14  Aligned_cols=127  Identities=14%  Similarity=0.164  Sum_probs=55.9

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHH
Q 014507          173 YTKIIHGYGKKMQIQNAENTLLAMKRRG-FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY-GSMVMAY  250 (423)
Q Consensus       173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~-~~li~~~  250 (423)
                      |...|+...+..-.+.|..+|-+..+.| +.+++..++++|..++ .|+...|.++|+--...  -||...| +-.+.-+
T Consensus       400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl~fL  476 (660)
T COG5107         400 FCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYLLFL  476 (660)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHHHHH
Confidence            4444444444555555555555555554 3444455555555443 34444555555443332  1222222 2233344


Q ss_pred             HHcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507          251 VRAGMLDRGEVLLREMDAQEVY-VGSEVYKALLRGYSMNGNSEGAQRVFEAIQ  302 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  302 (423)
                      .+.++-+.|..+|+....+--. .-...|..+|+--..-|++..+..+-+.|.
T Consensus       477 i~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~  529 (660)
T COG5107         477 IRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFR  529 (660)
T ss_pred             HHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHH
Confidence            4455555555555532221000 012345555555555555555444444444

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.57  E-value=0.85  Score=35.69  Aligned_cols=40  Identities=13%  Similarity=0.150  Sum_probs=16.3

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507          177 IHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK  217 (423)
Q Consensus       177 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  217 (423)
                      +..+...+........++.+...+. .+...++.++..|++
T Consensus        14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~   53 (140)
T smart00299       14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK   53 (140)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence            3333334444444444444443332 233344444444443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.56  E-value=1.2  Score=43.60  Aligned_cols=62  Identities=13%  Similarity=0.146  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          313 CALLINAYQMAGQSQKAYTAFQNMRK-AGLEPSDKCVALILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       313 ~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      |..|.+-....|..+.|+..--.+.. ..+-|....|+.+.-+.+..+.+....+.|-++...
T Consensus      1024 FmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkLe~~ 1086 (1189)
T KOG2041|consen 1024 FMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKLEAF 1086 (1189)
T ss_pred             HHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHHHhh
Confidence            33444445567888888887665554 346677888888877777777777777777666554

>PRK15331 chaperone protein SicA; Provisional

Probab=95.54  E-value=0.73  Score=36.73  Aligned_cols=90  Identities=12%  Similarity=0.002  Sum_probs=59.6

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507          282 LRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQL  361 (423)
Q Consensus       282 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  361 (423)
                      ..-+...|++++|+.+|..+...+. -+..-|..|..++-..+++++|...|...-..+. -|+..+-....++...|+.
T Consensus        44 Ay~~y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         44 AYEFYNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCH
Confidence            3345567888888888887766432 2555566777777777888888888776654331 2333344556677777888


Q ss_pred             HHHHHHHHHHHH
Q 014507          362 NRALEFLIDLER  373 (423)
Q Consensus       362 ~~a~~~~~~m~~  373 (423)
                      +.|...|+....
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            888888777766

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.49  E-value=0.91  Score=35.52  Aligned_cols=42  Identities=14%  Similarity=0.149  Sum_probs=19.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507          210 VMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR  252 (423)
Q Consensus       210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  252 (423)
                      .++..+.+.+.......+++.+...+ ..+...++.++..|++
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~   53 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAK   53 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHH
Confidence            34444444445555555555544443 2344444555555544

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.47  E-value=0.66  Score=43.35  Aligned_cols=68  Identities=9%  Similarity=-0.104  Sum_probs=55.7

Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ--VTLTVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      +.+...|+.+..+|.+.|++++|+..|++..+.......  .+|..+..+|...|+.++|+..+++..+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            456788899999999999999999999998887433111  45888999999999999999999998875

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.47  E-value=0.34  Score=45.16  Aligned_cols=66  Identities=12%  Similarity=-0.077  Sum_probs=55.5

Q ss_pred             ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 014507          134 RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANI--RDYTKIIHGYGKKMQIQNAENTLLAMKRR  199 (423)
Q Consensus       134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~  199 (423)
                      +...++.+..++...|++++|...++..++.......  .+|..+..+|.+.|+.++|+..+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            4478999999999999999999999888776533221  45888999999999999999999999886

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.45  E-value=0.83  Score=34.79  Aligned_cols=67  Identities=16%  Similarity=0.226  Sum_probs=36.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507          309 DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGF  376 (423)
Q Consensus       309 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  376 (423)
                      +.......+..+...|+-+.-.+++.++.+.+ .+++.....+..+|.+.|+..++.+++.+.-+.|+
T Consensus        85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            34444555666666666666666666665432 55666666666667777776666666666666665

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.42  E-value=0.28  Score=44.66  Aligned_cols=128  Identities=15%  Similarity=0.081  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHH----HHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCC-CCCHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAI----QFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRK----AGL-EPSDK  346 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m----~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~-~p~~~  346 (423)
                      .|..|-+.|.-.|+++.|....+.=    .+.|-+. .-..+..+..++.-.|+++.|.+.|+.-..    .|- .....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            4555555555566666666554321    1222111 223455566666666677666666655322    121 12233


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCcCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507          347 CVALILSACEKENQLNRALEFLIDLERD-----GFMVGKEASCTLAAWFKRLGVVEEVEHVLR  404 (423)
Q Consensus       347 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  404 (423)
                      +..+|..+|.-..++++|+.++.+-..-     ...-....+.+|..+|...|..++|..+.+
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae  339 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE  339 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            4445566666666666666665542211     112234556666777766676666666544

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.37  E-value=2.3  Score=39.50  Aligned_cols=149  Identities=15%  Similarity=0.153  Sum_probs=114.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH-HHHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG-EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEV-YKAL  281 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~l  281 (423)
                      =..+|...|++-.+..-++.|..+|-+..+.| +.+++..++++|..++ .|+...|.++|+.-...-  ||... -+-.
T Consensus       396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f--~d~~~y~~ky  472 (660)
T COG5107         396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF--PDSTLYKEKY  472 (660)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC--CCchHHHHHH
Confidence            45678889999888889999999999999998 6778888999998776 578889999998655432  34333 3556


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507          282 LRGYSMNGNSEGAQRVFEAIQFAGITPD--ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKE  358 (423)
Q Consensus       282 i~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  358 (423)
                      +..+.+.++-+.|..+|+..+.+ +..+  ...|..+|.--..-|+...|..+=++|.+  +.|...+.....+-|.-.
T Consensus       473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e--~~pQen~~evF~Sry~ik  548 (660)
T COG5107         473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE--LVPQENLIEVFTSRYAIK  548 (660)
T ss_pred             HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH--HcCcHhHHHHHHHHHhhh
Confidence            77788899999999999966543 1223  56899999999999999999998888887  456666666666655543

>PRK15331 chaperone protein SicA; Provisional

Probab=95.34  E-value=1.1  Score=35.69  Aligned_cols=88  Identities=10%  Similarity=-0.027  Sum_probs=59.6

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHH
Q 014507          214 MYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEG  293 (423)
Q Consensus       214 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  293 (423)
                      -+...|++++|..+|+-+.-.+ .-+..-|..|..++-..+++++|...|......+.. |...+-....+|...|+.+.
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d-~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~  123 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYD-FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAK  123 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHH
Confidence            3446788888888887777654 234555666666666777788888877776655432 44455566677777788888


Q ss_pred             HHHHHHHHHH
Q 014507          294 AQRVFEAIQF  303 (423)
Q Consensus       294 a~~~~~~m~~  303 (423)
                      |...|+....
T Consensus       124 A~~~f~~a~~  133 (165)
T PRK15331        124 ARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHh
Confidence            8877777765

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.29  E-value=1.8  Score=38.80  Aligned_cols=130  Identities=11%  Similarity=0.177  Sum_probs=81.1

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cCC----HHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHHcCC-
Q 014507          186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSK--AGN----LKMAEETFEEIKLLGE---PLDKRSYGSMVMAYVRAGM-  255 (423)
Q Consensus       186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~----~~~A~~~~~~m~~~g~---~~~~~~~~~li~~~~~~~~-  255 (423)
                      +++...+++.|.+.|+.-+..+|-+.......  ..+    ..+|..+|+.|++...   .++-.++..++..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            45667788888888888777776553333222  222    5578899999988642   2344556555544  3333 


Q ss_pred             ---hhHHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014507          256 ---LDRGEVLLREMDAQEVYVGSE--VYKALLRGYSMNGN--SEGAQRVFEAIQFAGITPDARMCALLI  317 (423)
Q Consensus       256 ---~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~~~~~~li  317 (423)
                         .+.++..|+.+.+.|...+..  ....++..+-....  ..++.++++.+.+.|+++....|..+.
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence               355778888888877765432  23333332222222  447888889999999888777776554

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=95.28  E-value=3.3  Score=40.73  Aligned_cols=187  Identities=14%  Similarity=0.060  Sum_probs=99.1

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH----
Q 014507          201 FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSE----  276 (423)
Q Consensus       201 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----  276 (423)
                      ++-+....-.+.+++.+.|.-++|.+.|-+.   + .|.     ..+.+|...++|.+|.++-+...-..+..-..    
T Consensus       848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~pk-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aa  918 (1189)
T KOG2041|consen  848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRR---S-LPK-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAA  918 (1189)
T ss_pred             cCcccchHHHHHHHHHhhchHHHHHHHHHhc---c-CcH-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence            3446667777888888888888887776443   2 222     23455666777777776665433222210000    


Q ss_pred             ------HHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCH----HHHHHH-HHHH----------HHcCCHHHHHH
Q 014507          277 ------VYKALLRGYSMNGNSEGAQRVFEAIQF----AGITPDA----RMCALL-INAY----------QMAGQSQKAYT  331 (423)
Q Consensus       277 ------~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~----~~~~~l-i~~~----------~~~g~~~~a~~  331 (423)
                            -.---|..+.+.|+.-.|.+++.+|.+    ++.+|-.    ....++ +.-+          -.+|..++|..
T Consensus       919 qll~~~~~~eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlLvE~h~~~ik~~~~~~~~g~~~dat~  998 (1189)
T KOG2041|consen  919 QLLADANHMEAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALLVENHRQTIKELRKIDKHGFLEDATD  998 (1189)
T ss_pred             HHHhhcchHHHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhcCcchhhhh
Confidence                  011235567778888778888777754    3333321    111111 1111          13456666666


Q ss_pred             HHHHHHHC-------CCCCCHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHC-CCCcCHHHHHHHHHHHHHcCCH
Q 014507          332 AFQNMRKA-------GLEPSDKCVALIL--SACEKENQLNRALEFLIDLERD-GFMVGKEASCTLAAWFKRLGVV  396 (423)
Q Consensus       332 ~~~~m~~~-------~~~p~~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~-g~~~~~~~~~~l~~~~~~~g~~  396 (423)
                      +++.-.-.       +.---...|..+|  .--...|.++.|..---.+.+. .+-|..+.|+.+.-+-+....+
T Consensus       999 lles~~l~~~~ri~~n~WrgAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raF 1073 (1189)
T KOG2041|consen  999 LLESGLLAEQSRILENTWRGAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAF 1073 (1189)
T ss_pred             hhhhhhhhhHHHHHHhhhhhHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhh
Confidence            55443210       0111223344444  3344568888877765555543 5667788887666555444333

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=95.21  E-value=0.89  Score=41.54  Aligned_cols=95  Identities=12%  Similarity=-0.023  Sum_probs=61.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHH
Q 014507          311 RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVG-KEASCTLAAW  389 (423)
Q Consensus       311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~  389 (423)
                      .+++.+..+|.+.+++.+|++..+...+.+ ++|....-.=..++...|+++.|+..|+++.+.  .|+ ...-+.|+.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence            455667777778888888888877777654 456666666677777788888888888887774  443 4444445554


Q ss_pred             HHHcCCHHH-HHHHHHHhcc
Q 014507          390 FKRLGVVEE-VEHVLREYGL  408 (423)
Q Consensus       390 ~~~~g~~~~-A~~~~~~m~~  408 (423)
                      -.+.....+ ..++|..|-.
T Consensus       335 ~~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            444444433 3566666643

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.16  E-value=1.7  Score=41.91  Aligned_cols=128  Identities=13%  Similarity=0.001  Sum_probs=57.4

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014507          175 KIIHGYGKKMQIQNAENTLLAMKRR-GFICD-----QVTLTVMVVMYSK----AGNLKMAEETFEEIKLLGEPLDKRSYG  244 (423)
Q Consensus       175 ~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-----~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~  244 (423)
                      .++...+-.|+-+.+++.+.+..+. |+.-.     ...|..++..++.    ..+.+.|.++++.+.+.  -|+...|.
T Consensus       193 kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl  270 (468)
T PF10300_consen  193 KLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFL  270 (468)
T ss_pred             HHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHH
Confidence            3455555555555555555544332 11110     1233333333332    23455556666555554  34444333


Q ss_pred             HH-HHHHHHcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507          245 SM-VMAYVRAGMLDRGEVLLREMDAQE---VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA  304 (423)
Q Consensus       245 ~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  304 (423)
                      .. .+.+...|++++|.+.|++.....   .+.....+--+.-.+.-..++++|.+.|..+.+.
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~  334 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE  334 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence            22 222334555666666665443211   1112233444444555556666666666665553

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=94.92  E-value=0.76  Score=42.03  Aligned_cols=261  Identities=16%  Similarity=0.043  Sum_probs=146.9

Q ss_pred             ccCCCCCHHHHHHHHHHhcCCChh-------hHHHHHHHHHhcCCchHHHHHHHHHh--hc--cc-CCCHHHHHHHHHHH
Q 014507          113 VSPETGNLSDLLAAWVRFMKPRRA-------DWLAVLKQLKLMEHPLYLQVAELALL--EE--SF-EANIRDYTKIIHGY  180 (423)
Q Consensus       113 ~~~~~g~~~~a~~~~~~~~~p~~~-------~~~~ll~~~~~~~~~~~a~~~~~~~~--~~--~~-~~~~~~~~~li~~~  180 (423)
                      -+++.|+.+..+++|+..++....       .|..|-++|--.++++.|.+++..=+  ..  |- .-...+...+.+.+
T Consensus        26 RLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGNtl  105 (639)
T KOG1130|consen   26 RLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGNTL  105 (639)
T ss_pred             HHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccchh
Confidence            356778888888888776554333       34444455555566666655543211  00  00 00111222344444


Q ss_pred             HccCCHHHHHHHHH----HHHHcCCCC-CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH---
Q 014507          181 GKKMQIQNAENTLL----AMKRRGFIC-DQVTLTVMVVMYSKAGN--------------------LKMAEETFEEIK---  232 (423)
Q Consensus       181 ~~~~~~~~a~~~~~----~m~~~g~~p-~~~~~~~li~~~~~~g~--------------------~~~A~~~~~~m~---  232 (423)
                      --.|.+++|...-.    -..+.|-.. ....+-.+...|...|.                    ++.|.++|.+=.   
T Consensus       106 Kv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~  185 (639)
T KOG1130|consen  106 KVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELS  185 (639)
T ss_pred             hhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHH
Confidence            45566666543221    122222110 12233345555554432                    334555554322   


Q ss_pred             -HcCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHH----hCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--
Q 014507          233 -LLGEP-LDKRSYGSMVMAYVRAGMLDRGEVLLREMD----AQEVY-VGSEVYKALLRGYSMNGNSEGAQRVFEAIQF--  303 (423)
Q Consensus       233 -~~g~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--  303 (423)
                       +.|-. .--..|..|...|.-.|+++.|....+.=.    +-|-. .-...+..+.+++.-.|+++.|.+.|+....  
T Consensus       186 ~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA  265 (639)
T KOG1130|consen  186 EKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA  265 (639)
T ss_pred             HHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence             22211 112357777777778899999987765532    22221 2345778888899999999999998876432  


Q ss_pred             --CCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          304 --AGI-TPDARMCALLINAYQMAGQSQKAYTAFQNMRK----A-GLEPSDKCVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       304 --~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                        -|- .....+..++...|.-..++++|..++.+-..    . ...-....+.+|..++...|..++|..+.+.-.+
T Consensus       266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence              221 22345556777888888888999888765432    1 1122346788889999999999998888776543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.88  E-value=1.1  Score=39.85  Aligned_cols=192  Identities=10%  Similarity=-0.035  Sum_probs=126.1

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCHH
Q 014507          216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ---EVYVGSEVYKALLRGYSMNGNSE  292 (423)
Q Consensus       216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~  292 (423)
                      ...|++.+|-..++++.+. .+.|...+..--.+|.-.|..+.-...+++....   +.+-..+.-..+.-++..+|-++
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence            3578888998899998876 4668888888889999999999988888888754   23222233334445566789999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507          293 GAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA---GLEPSDKCVALILSACEKENQLNRALEFLI  369 (423)
Q Consensus       293 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  369 (423)
                      +|++.-++..+-+ +-|.-.-.+....+-..|++.++.++..+-...   +.-.-...|-...-.+...+.++.|.++|+
T Consensus       193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            9999888877654 346667778888888899999999987765432   111112234444445566788999999998


Q ss_pred             H-HHHCCCCcCH---HHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          370 D-LERDGFMVGK---EASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       370 ~-m~~~g~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      . |.+.--+.|.   ..|.-+.-...+...+.+..++-+-+.++
T Consensus       272 ~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l~d~  315 (491)
T KOG2610|consen  272 REIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSLTDK  315 (491)
T ss_pred             HHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhhcch
Confidence            5 4444223333   22232333344444555555544444443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.72  E-value=0.81  Score=41.81  Aligned_cols=91  Identities=14%  Similarity=0.002  Sum_probs=49.0

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 014507          177 IHGYGKKMQIQNAENTLLAMKRR-----GFIC---------DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRS  242 (423)
Q Consensus       177 i~~~~~~~~~~~a~~~~~~m~~~-----g~~p---------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~  242 (423)
                      .+.+.+.|++..|..-|++....     +..+         -..++..+.-.|.+.+++..|+..-++....+ ++++-.
T Consensus       215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KA  293 (397)
T KOG0543|consen  215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKA  293 (397)
T ss_pred             hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhH
Confidence            45678888998888888876542     1111         11234444445555555555555555555443 334444


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHh
Q 014507          243 YGSMVMAYVRAGMLDRGEVLLREMDA  268 (423)
Q Consensus       243 ~~~li~~~~~~~~~~~a~~~~~~m~~  268 (423)
                      .-.-..+|...|+++.|...|+++++
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka~k  319 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKALK  319 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            44444555555555555555555555

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.70  E-value=0.53  Score=45.48  Aligned_cols=244  Identities=11%  Similarity=0.027  Sum_probs=129.7

Q ss_pred             hhhhcCchhhHhhhh-------hcccccccccCCCcceeeeeeccccchHHHH---HHhcCChhhhhhhHHHH-HHHHhc
Q 014507           45 WSRSLRSGPALEAIK-------AEDMGKTQVKDDTSMFTWIQIGPNITEEQKQ---AISQFPRKMTKRCKAFV-KQIICV  113 (423)
Q Consensus        45 ~~~~~~~~~a~~~~~-------~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~~---~a~~~~~~m~~~~~~~~-~~ll~~  113 (423)
                      |+.+|.+++|..+.+       ++++....+..    ..++.--.+|.+-+..   ....-++++.++...-- -.+...
T Consensus       566 ~Ieag~f~ea~~iaclgVv~~DW~~LA~~ALeA----L~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~  641 (1081)
T KOG1538|consen  566 YIERGLFKEAYQIACLGVTDTDWRELAMEALEA----LDFETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADV  641 (1081)
T ss_pred             hhhccchhhhhcccccceecchHHHHHHHHHhh----hhhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            377777777765544       55555544422    5566667777753332   22222344443222111 122345


Q ss_pred             cCCCCCHHHHHHHHHHhcCCCh--hhHHH-----HHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCH
Q 014507          114 SPETGNLSDLLAAWVRFMKPRR--ADWLA-----VLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQI  186 (423)
Q Consensus       114 ~~~~g~~~~a~~~~~~~~~p~~--~~~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  186 (423)
                      ++-.|++.+|-++|.+-...+.  ..|+-     ...-+...|..++-+.+.+.-  .....|+.-=.+....+..+|+.
T Consensus       642 ~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKR--A~WAr~~kePkaAAEmLiSaGe~  719 (1081)
T KOG1538|consen  642 FAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKR--ADWARNIKEPKAAAEMLISAGEH  719 (1081)
T ss_pred             HHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH--HHHhhhcCCcHHHHHHhhcccch
Confidence            6667888888888877533222  11111     111222233333322222110  11111111112234445566666


Q ss_pred             HHHHHHHH------HHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 014507          187 QNAENTLL------AMKRRGFIC---DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD  257 (423)
Q Consensus       187 ~~a~~~~~------~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~  257 (423)
                      ++|..+.-      -+.+.+-+.   +..+...+...+.+...+..|-++|.+|-+.         ..++......++|+
T Consensus       720 ~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~  790 (1081)
T KOG1538|consen  720 VKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWD  790 (1081)
T ss_pred             hhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccch
Confidence            66654421      111111111   4456666666666777788899999887542         24666777889999


Q ss_pred             HHHHHHHHHHhCCCCCCH-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 014507          258 RGEVLLREMDAQEVYVGS-----------EVYKALLRGYSMNGNSEGAQRVFEAIQFAG  305 (423)
Q Consensus       258 ~a~~~~~~m~~~~~~p~~-----------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  305 (423)
                      +|..+-+...+-  .||.           .-|.-.-.+|.++|+-.+|.++++++....
T Consensus       791 eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnna  847 (1081)
T KOG1538|consen  791 EAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNNA  847 (1081)
T ss_pred             HhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhh
Confidence            999888776552  2222           234555678888899999999988887543

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=94.69  E-value=3.5  Score=37.96  Aligned_cols=277  Identities=9%  Similarity=-0.064  Sum_probs=143.3

Q ss_pred             HHHhccCCCCCHHHHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCC
Q 014507          109 QIICVSPETGNLSDLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQ  185 (423)
Q Consensus       109 ~ll~~~~~~g~~~~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  185 (423)
                      ..-..+.+..++..|+..+...  .-||. .-|..=...+...++++++.--.+.-++... -....+.-.-+++...++
T Consensus        54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd-~~~k~~~r~~~c~~a~~~  132 (486)
T KOG0550|consen   54 EEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD-GFSKGQLREGQCHLALSD  132 (486)
T ss_pred             hhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCC-CccccccchhhhhhhhHH
Confidence            3445566778888888888776  33544 3455555566667777766444333222211 111234444555666666


Q ss_pred             HHHHHHHHHHHHHc----------C------CCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507          186 IQNAENTLLAMKRR----------G------FICDQVTLTVM-VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM  248 (423)
Q Consensus       186 ~~~a~~~~~~m~~~----------g------~~p~~~~~~~l-i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  248 (423)
                      ..+|.+.++.-...          .      -+|.-.+|..+ ...+...|+.++|...-....+.. ..+....-.--.
T Consensus       133 ~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~  211 (486)
T KOG0550|consen  133 LIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGL  211 (486)
T ss_pred             HHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc-cchhHHHHhccc
Confidence            66676666532200          0      01222233322 233445677777766666655542 112222222222


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHHHH-------------HHHHHHHHhCCCHHHHHHHHHHHHHC---CCCCCHHH
Q 014507          249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVY-------------KALLRGYSMNGNSEGAQRVFEAIQFA---GITPDARM  312 (423)
Q Consensus       249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-------------~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~  312 (423)
                      ++.-.++.+.+...|++....+  |+...-             ..=-+-..+.|++..|.+.|.+....   +..|+...
T Consensus       212 ~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~nakl  289 (486)
T KOG0550|consen  212 CLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKL  289 (486)
T ss_pred             ccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHH
Confidence            3334566777777777776654  332211             11122345567777777777776642   33445566


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHHH
Q 014507          313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMV-GKEASCTLAAWF  390 (423)
Q Consensus       313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~~  390 (423)
                      |.....+..+.|+.++|+.--++..+  +.|. ...|..-..++...++++.|++-++...+..-.+ ...++.....++
T Consensus       290 Y~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aL  367 (486)
T KOG0550|consen  290 YGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLAL  367 (486)
T ss_pred             HHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence            66666677777777777777666654  2221 1222222333444567777777777666542222 233444444444


Q ss_pred             H
Q 014507          391 K  391 (423)
Q Consensus       391 ~  391 (423)
                      -
T Consensus       368 k  368 (486)
T KOG0550|consen  368 K  368 (486)
T ss_pred             H
Confidence            3

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=94.45  E-value=2.1  Score=34.44  Aligned_cols=101  Identities=14%  Similarity=0.100  Sum_probs=43.1

Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 014507          226 ETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG  305 (423)
Q Consensus       226 ~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  305 (423)
                      ++.+.+.+.+++|+...|..++..+.+.|.+.    .+..+...++-+|.......+-.+..  ....+.++=-+|.++ 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR-   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR-   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence            34444445555555555555555555555532    23333344444444433333322221  112222222222211 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          306 ITPDARMCALLINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       306 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  336 (423)
                         =...+..+++.+...|++-+|+++.+..
T Consensus        88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence               0012344455555555555555555543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.42  E-value=3.2  Score=41.70  Aligned_cols=178  Identities=14%  Similarity=0.116  Sum_probs=122.4

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMV----VMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM  246 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li----~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  246 (423)
                      .....-++.+.+...++.|..+.+.   .+.  |..+...+.    +.+.+.|++++|...|-+-... ++|.     .+
T Consensus       335 k~le~kL~iL~kK~ly~~Ai~LAk~---~~~--d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~V  403 (933)
T KOG2114|consen  335 KDLETKLDILFKKNLYKVAINLAKS---QHL--DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EV  403 (933)
T ss_pred             ccHHHHHHHHHHhhhHHHHHHHHHh---cCC--CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HH
Confidence            3455678888888888888876543   333  344444444    4455789999999888776543 2332     24


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507          247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS  326 (423)
Q Consensus       247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  326 (423)
                      |.-|.......+-...++.+.+.|.. +...-+.|+.+|.+.++.++-.++.+.-. .|..-  .-....+..+.+.+-.
T Consensus       404 i~kfLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~~--fd~e~al~Ilr~snyl  479 (933)
T KOG2114|consen  404 IKKFLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEWF--FDVETALEILRKSNYL  479 (933)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Cccee--eeHHHHHHHHHHhChH
Confidence            55566666777778888899999887 77788899999999999999888877665 44331  1234567777888888


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          327 QKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDL  371 (423)
Q Consensus       327 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  371 (423)
                      ++|..+-.....     +......+   +-..+++++|.++++.+
T Consensus       480 ~~a~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  480 DEAELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence            888877665542     23333444   34578899999998764

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.37  E-value=2.9  Score=35.66  Aligned_cols=206  Identities=15%  Similarity=0.093  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY  250 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  250 (423)
                      ..|.....+|....++++|...+.+..+. .+-+...|.       ..+.++.|.-+.+++.+..  --+..|+--...|
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kls--Evvdl~eKAs~lY  101 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLS--EVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHH
Confidence            34555667777888888888776665532 121222222       1233455666666665431  1233466666677


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCC--CCCHHHHHHHHHHHHHcCC
Q 014507          251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF---AGI--TPDARMCALLINAYQMAGQ  325 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~--~p~~~~~~~li~~~~~~g~  325 (423)
                      ..+|.++.|-..+++.-+.                ...-++++|+++|++...   .+-  .--...+...-+.+.+...
T Consensus       102 ~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k  165 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK  165 (308)
T ss_pred             HHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence            7777777766666655431                111233444444443221   100  0112233444455566666


Q ss_pred             HHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHHcCCHH
Q 014507          326 SQKAYTAFQNMRK----AGLEPS-DKCVALILSACEKENQLNRALEFLIDLERD---GFMVGKEASCTLAAWFKRLGVVE  397 (423)
Q Consensus       326 ~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~l~~~~~~~g~~~  397 (423)
                      +++|-..+.+-..    -.--|+ -..|...|-.+....++..|.+.++.-.+.   .-+-+..+...|+.+| ..|+.+
T Consensus       166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E  244 (308)
T KOG1585|consen  166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIE  244 (308)
T ss_pred             hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHH
Confidence            6665554443221    111122 233555555556666777777777764433   1223456666777766 457777


Q ss_pred             HHHHHH
Q 014507          398 EVEHVL  403 (423)
Q Consensus       398 ~A~~~~  403 (423)
                      ++.+++
T Consensus       245 ~~~kvl  250 (308)
T KOG1585|consen  245 EIKKVL  250 (308)
T ss_pred             HHHHHH
Confidence            766654

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.35  E-value=0.77  Score=39.73  Aligned_cols=97  Identities=18%  Similarity=0.154  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGI--TPDARMCALLINAYQMAGQSQKAYTAFQNMRKA-GLEPS-DKCVALIL  352 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~li  352 (423)
                      .|+.-+..+ +.|++..|..-|....+..-  .-....+--|..++...|++++|..+|..+.+. +-.|- +..+--|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            444444433 33446666666655554321  011223334555556666666666666555542 11121 23444555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHC
Q 014507          353 SACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       353 ~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      ....+.|+.++|...|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            5555556666666666655553

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=94.26  E-value=3.2  Score=37.50  Aligned_cols=125  Identities=14%  Similarity=0.106  Sum_probs=58.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh----CCCCCCHHHH---
Q 014507          211 MVVMYSKAGNLKMAEETFEEIKLLG-----EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDA----QEVYVGSEVY---  278 (423)
Q Consensus       211 li~~~~~~g~~~~A~~~~~~m~~~g-----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p~~~~~---  278 (423)
                      +-.++...+.++++++.|+...+-.     -.....+|-.|-+.|.+..|+++|.-+..+..+    .++.--..-|   
T Consensus       128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~  207 (518)
T KOG1941|consen  128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM  207 (518)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence            4444555555666666665554311     111223556666666666666666555444332    1222001111   


Q ss_pred             --HHHHHHHHhCCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          279 --KALLRGYSMNGNSEGAQRVFEAIQF----AGITP-DARMCALLINAYQMAGQSQKAYTAFQN  335 (423)
Q Consensus       279 --~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~  335 (423)
                        ..|.-++...|+...|.+.-++..+    .|-.+ .......+.+.|...|+.|.|+.-|+.
T Consensus       208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ  271 (518)
T ss_pred             HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence              2223344555555555555444332    22222 223344455566666666666655554

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=94.25  E-value=1.9  Score=32.97  Aligned_cols=67  Identities=19%  Similarity=0.246  Sum_probs=50.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507          344 SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRET  411 (423)
Q Consensus       344 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  411 (423)
                      +...+...+......|+-++..+++.++.+. -.+++...-.+..+|.+.|+..++.+++++--++|+
T Consensus        85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   85 LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence            3455677788889999999999999998764 468888999999999999999999999999888775

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.17  E-value=0.85  Score=40.04  Aligned_cols=73  Identities=19%  Similarity=0.245  Sum_probs=38.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCCCHHHHHH
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDA-----QEVYVGSEVYKA  280 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~  280 (423)
                      ++..++..+...|+++.+.+.++++.... +-+...|..+|.+|.+.|+...|...|+.+.+     .|+.|...+...
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            44445555555555555555555555543 33555555555555555555555555555443     344444444333

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=94.14  E-value=4.5  Score=37.01  Aligned_cols=249  Identities=13%  Similarity=0.060  Sum_probs=162.2

Q ss_pred             CCCCCHHHHHHHHHHhc-CCChhh--HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHH
Q 014507          115 PETGNLSDLLAAWVRFM-KPRRAD--WLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAEN  191 (423)
Q Consensus       115 ~~~g~~~~a~~~~~~~~-~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  191 (423)
                      .-.|+++.|.+-|+.|. .|....  ...|.-..-+.|..+.+..+-+...... +.-...+...+...+..|+|+.|++
T Consensus       131 l~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~Alk  209 (531)
T COG3898         131 LLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALK  209 (531)
T ss_pred             HhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHH
Confidence            35799999999999995 454432  2334444456777777776665443332 2334678889999999999999999


Q ss_pred             HHHHHHHcC-CCCCHHH--HHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCChhHHHHHHH
Q 014507          192 TLLAMKRRG-FICDQVT--LTVMVVMYSK---AGNLKMAEETFEEIKLLGEPLDKRS-YGSMVMAYVRAGMLDRGEVLLR  264 (423)
Q Consensus       192 ~~~~m~~~g-~~p~~~~--~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~~-~~~li~~~~~~~~~~~a~~~~~  264 (423)
                      +++.-+... +.++..-  -..|+.+-..   ..+...|...-.+..+  +.||... --.-..++.+.|+..++-.+++
T Consensus       210 Lvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE  287 (531)
T COG3898         210 LVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILE  287 (531)
T ss_pred             HHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHH
Confidence            999877653 3444432  2233333221   2345556555555444  3566543 3345577889999999999999


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-CCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507          265 EMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF-AGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE  342 (423)
Q Consensus       265 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  342 (423)
                      .+-+....|+.  .  .+..+.+.|+.  +..=++...+ ...+| +..+--.+..+-...|++..|..--+....  ..
T Consensus       288 ~aWK~ePHP~i--a--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~  359 (531)
T COG3898         288 TAWKAEPHPDI--A--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EA  359 (531)
T ss_pred             HHHhcCCChHH--H--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hC
Confidence            99998766653  2  22234455553  2222222221 11234 566777788888899999888776665554  57


Q ss_pred             CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHC
Q 014507          343 PSDKCVALILSACE-KENQLNRALEFLIDLERD  374 (423)
Q Consensus       343 p~~~~~~~li~~~~-~~g~~~~a~~~~~~m~~~  374 (423)
                      |....|..|...-. ..|+-.++...+.+..+.
T Consensus       360 pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         360 PRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             chhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            88888888877644 459999999999888765

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=94.00  E-value=3.8  Score=38.79  Aligned_cols=62  Identities=11%  Similarity=0.009  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGIT-PDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      +-..+..++.+.|+.++|.+.+++|.+..-. -.......++.++...+.+.++..++.+-.+
T Consensus       261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD  323 (539)
T PF04184_consen  261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD  323 (539)
T ss_pred             hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence            3344555556666667676666666543111 1233455566666666666666666666543

The molecular function of this protein is uncertain.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.89  E-value=2.3  Score=36.86  Aligned_cols=97  Identities=12%  Similarity=0.119  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CC-CHHHHHHHH
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGE--PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEV-YV-GSEVYKALL  282 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~~~li  282 (423)
                      .|+.-+..+ +.|++..|...|....+...  .-....+--|..++...|++++|..+|..+.+.-. .| -+...--|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            344444332 44445555555555554320  01112233355555555555555555555544211 11 123444444


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHC
Q 014507          283 RGYSMNGNSEGAQRVFEAIQFA  304 (423)
Q Consensus       283 ~~~~~~g~~~~a~~~~~~m~~~  304 (423)
                      ....+.|+.++|..+|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            4455555555555555555443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.75  E-value=1.1  Score=39.43  Aligned_cols=78  Identities=13%  Similarity=0.054  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL-----LGEPLDKRSYGS  245 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~~~~~~~~~  245 (423)
                      .++..++..+...|+++.+.+.++++...... +...|..+|.+|.+.|+...|+..|+++.+     .|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            46777889999999999999999999998544 888999999999999999999999998876     688888887776


Q ss_pred             HHHH
Q 014507          246 MVMA  249 (423)
Q Consensus       246 li~~  249 (423)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            6655

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.74  E-value=5.5  Score=36.62  Aligned_cols=65  Identities=18%  Similarity=-0.020  Sum_probs=41.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc---CHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          344 SDKCVALILSACEKENQLNRALEFLIDLERDGFMV---GKEASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       344 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      ...++..+...+.+.|.++.|...+..+...+...   .+.+.-.-.+.+...|+..+|...+++..+
T Consensus       145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34567777777777777777777777776543111   334444556666677777777777766655

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=93.50  E-value=12  Score=39.55  Aligned_cols=111  Identities=15%  Similarity=0.139  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDK--CVALILSA  354 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~  354 (423)
                      .|.+..+.+.....+++|.-.|+..-+.         .-.+.+|..+|+|.+|+.+..++..   .-|..  +-..|+..
T Consensus       941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~ 1008 (1265)
T KOG1920|consen  941 IYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYKECGDWREALSLAAQLSE---GKDELVILAEELVSR 1008 (1265)
T ss_pred             HHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHH
Confidence            3444444555566677776666654421         2346677778888888888777652   11221  22556777


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          355 CEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       355 ~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      +...+++-+|-++..+....        ....+..|++...|++|..+...-.
T Consensus      1009 L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1009 LVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             HHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence            77888888888777766543        2344555666777777777765544

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.45  E-value=5.5  Score=35.70  Aligned_cols=49  Identities=12%  Similarity=0.026  Sum_probs=21.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          183 KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIK  232 (423)
Q Consensus       183 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  232 (423)
                      .|+..+|-..++++.+. .+.|...++..=.+|.-.|+.+.-...+++..
T Consensus       116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIi  164 (491)
T KOG2610|consen  116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKII  164 (491)
T ss_pred             cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhc
Confidence            34444444444444443 22244444444444444444444444444443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.44  E-value=1.6  Score=43.72  Aligned_cols=247  Identities=11%  Similarity=-0.000  Sum_probs=145.6

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCH--HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507          138 WLAVLKQLKLMEHPLYLQVAELALLEESFEANI--RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMY  215 (423)
Q Consensus       138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  215 (423)
                      ...-+..+.+...+..|..+..   ..+..++.  .......+.+.+.|++++|..-+-+-... +.|.     .+|.-|
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kf  407 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKF  407 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHh
Confidence            3344555555555555544432   23322221  22333444566789999998877665443 2322     256677


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 014507          216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQ  295 (423)
Q Consensus       216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  295 (423)
                      ..+....+-..+++.+.+.|+. +...-+.|+.+|.+.++.++-.++.+.-. .|..  ..-....+..+.+.+-.++|.
T Consensus       408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~  483 (933)
T KOG2114|consen  408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE  483 (933)
T ss_pred             cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence            7788888899999999999965 77777889999999999998888776655 3322  112445666677777777777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507          296 RVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDG  375 (423)
Q Consensus       296 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  375 (423)
                      .+-.....     +......+   +-..|++++|++.+..+.-...-+....|...+   . ...+++...++-+.....
T Consensus       484 ~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~slp~~e~l~~l~kyGk~L---l-~h~P~~t~~ili~~~t~~  551 (933)
T KOG2114|consen  484 LLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSLPISELLRTLNKYGKIL---L-EHDPEETMKILIELITEL  551 (933)
T ss_pred             HHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcCCHHHHHHHHHHHHHHH---H-hhChHHHHHHHHHHHhhc
Confidence            66555442     22333333   345689999999998764222222223333322   2 345666666666655443


Q ss_pred             CCcCHHHHHHHH-----HHHHHcCCHHHHHHHHHHhccc
Q 014507          376 FMVGKEASCTLA-----AWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       376 ~~~~~~~~~~l~-----~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      .+++.......+     ....-.++++....+++.|.+.
T Consensus       552 ~~~~~~~~~s~~~~~~~~i~if~~~~~~~~~Fl~~~~E~  590 (933)
T KOG2114|consen  552 NSQGKGKSLSNIPDSIEFIGIFSQNYQILLNFLESMSEI  590 (933)
T ss_pred             CCCCCCchhhcCccchhheeeeccCHHHHHHHHHHHHhc
Confidence            333322222222     2234466777777777766543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=93.40  E-value=2.7  Score=32.02  Aligned_cols=52  Identities=17%  Similarity=0.149  Sum_probs=25.0

Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507          251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  303 (423)
                      +..|+.+.|++.|.+....-.+ ....||.-.+++.-.|+.++|++=+++..+
T Consensus        54 aE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   54 AEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            3445555555555554443222 344555555555555555555555544443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=93.32  E-value=6.1  Score=35.82  Aligned_cols=128  Identities=13%  Similarity=0.053  Sum_probs=64.0

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH----CCCCCCHHHHHH
Q 014507          245 SMVMAYVRAGMLDRGEVLLREMDAQE-----VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF----AGITPDARMCAL  315 (423)
Q Consensus       245 ~li~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~g~~p~~~~~~~  315 (423)
                      ++-.++...+.++++++.|+...+..     ......+|..|-..|.+..|.++|.-+..+..+    .++..-..-|..
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            34455555556666666666654321     111234666666666666666666655544322    232222222332


Q ss_pred             H-----HHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          316 L-----INAYQMAGQSQKAYTAFQNMRK----AGLEPS-DKCVALILSACEKENQLNRALEFLIDLE  372 (423)
Q Consensus       316 l-----i~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  372 (423)
                      +     .-++...|+...|.+.-++..+    .|-+|. ......+.+.|...|+.+.|..-++...
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            2     2345556666666666665543    232221 2233444555556666666655555543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=92.94  E-value=3.2  Score=31.63  Aligned_cols=86  Identities=22%  Similarity=0.162  Sum_probs=37.3

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHH---HHHHHHHHHHhCCCH
Q 014507          216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ-EVYVGSE---VYKALLRGYSMNGNS  291 (423)
Q Consensus       216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~---~~~~li~~~~~~g~~  291 (423)
                      +..|+++.|++.|.+....- +-....||.-..++--.|+.++|+.=+++..+. |-. +..   .|..-...|...|+-
T Consensus        54 aE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~d  131 (175)
T KOG4555|consen   54 AEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGND  131 (175)
T ss_pred             HhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCch
Confidence            34455555555554444432 223444555555555555555555444444432 111 211   122222334445555


Q ss_pred             HHHHHHHHHHHH
Q 014507          292 EGAQRVFEAIQF  303 (423)
Q Consensus       292 ~~a~~~~~~m~~  303 (423)
                      +.|..=|+...+
T Consensus       132 d~AR~DFe~AA~  143 (175)
T KOG4555|consen  132 DAARADFEAAAQ  143 (175)
T ss_pred             HHHHHhHHHHHH
Confidence            555555544443

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.80  E-value=4.3  Score=32.69  Aligned_cols=52  Identities=10%  Similarity=0.052  Sum_probs=23.2

Q ss_pred             HcCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507          252 RAGMLDRGEVLLREMDAQEVYVG-SEVYKALLRGYSMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       252 ~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  303 (423)
                      +.+..++|+.-|.++.+.|...= .-.--.+.......|+...|...|+++-.
T Consensus        70 ~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~  122 (221)
T COG4649          70 QENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAA  122 (221)
T ss_pred             HcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhc
Confidence            44555566666666655544310 00111112233445555555555555544

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.70  E-value=9.4  Score=36.31  Aligned_cols=80  Identities=8%  Similarity=0.012  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 014507          241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLIN  318 (423)
Q Consensus       241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~  318 (423)
                      .+-..+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+-.+...+. -..+|+..+-
T Consensus       260 y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALL  339 (539)
T PF04184_consen  260 YAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALL  339 (539)
T ss_pred             hhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHH
Confidence            33445666677889999999999999865322 244578889999999999999999999876533222 3345666544


Q ss_pred             HH
Q 014507          319 AY  320 (423)
Q Consensus       319 ~~  320 (423)
                      -+
T Consensus       340 ka  341 (539)
T PF04184_consen  340 KA  341 (539)
T ss_pred             HH
Confidence            33

The molecular function of this protein is uncertain.

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=92.69  E-value=6.7  Score=34.58  Aligned_cols=143  Identities=14%  Similarity=0.098  Sum_probs=74.8

Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 014507          178 HGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD  257 (423)
Q Consensus       178 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~  257 (423)
                      ......|++.+|..+|+........ +...--.+...|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            3445667777777777776665333 344455567777777777777777776654321111222223344444444444


Q ss_pred             HHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC
Q 014507          258 RGEVLLREMDAQEVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGI-TPDARMCALLINAYQMAG  324 (423)
Q Consensus       258 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g  324 (423)
                      +...+-++.-..   | |...-..+...+...|+.+.|.+.+-.+.++.. .-|...-..++..+.-.|
T Consensus       221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            444444443332   2 445555566666666666666665555443211 123344444555444444

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=92.67  E-value=6.1  Score=34.07  Aligned_cols=81  Identities=17%  Similarity=0.169  Sum_probs=48.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014507          205 QVTLTVMVVMYSKAGNLKMAEETFEEIKLLG--EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALL  282 (423)
Q Consensus       205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  282 (423)
                      ...|+.-+.. .+.|++++|.+.|+.+....  -+-...+--.++-++.+.++++.|...+++............|...|
T Consensus        35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            3445544444 47788888888888877643  12234455566667777788888888877777654333333455555


Q ss_pred             HHHH
Q 014507          283 RGYS  286 (423)
Q Consensus       283 ~~~~  286 (423)
                      .+++
T Consensus       114 kgLs  117 (254)
T COG4105         114 KGLS  117 (254)
T ss_pred             HHHH
Confidence            5544

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=92.65  E-value=5.3  Score=33.34  Aligned_cols=200  Identities=15%  Similarity=0.028  Sum_probs=99.0

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRR-GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM  248 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  248 (423)
                      ...+......+...+++..+...+...... ........+......+...+++..+.+.+.........+ .........
T Consensus        59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  137 (291)
T COG0457          59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLAL  137 (291)
T ss_pred             hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHH
Confidence            445555556666666666666666655542 122244455555555555666666666666665543222 111222222


Q ss_pred             -HHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 014507          249 -AYVRAGMLDRGEVLLREMDAQEV--YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAG  324 (423)
Q Consensus       249 -~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g  324 (423)
                       .+...|+++.+...+.+......  ......+......+...++.+.+...+....... .. ....+..+-..+...+
T Consensus       138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  216 (291)
T COG0457         138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLN-PDDDAEALLNLGLLYLKLG  216 (291)
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhC-cccchHHHHHhhHHHHHcc
Confidence             45566666666666666544211  1122333333333455556666666666555432 11 2445555555555555


Q ss_pred             CHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          325 QSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       325 ~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                      +++.+...+......  .|+ ...+..+...+...+..+.+...+.+...
T Consensus       217 ~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         217 KYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             cHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            666666666555542  222 23333333333344455555555555544

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.64  E-value=4.6  Score=32.57  Aligned_cols=135  Identities=10%  Similarity=0.104  Sum_probs=79.7

Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 014507          190 ENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ  269 (423)
Q Consensus       190 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  269 (423)
                      .+.+..+.+.|++|+...+..+++.+.+.|++...    .++...++-+|.......+-.+..  ....+.++=-+|.++
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence            34555556677888888888888888888875543    455555666666665555543332  233444444444443


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          270 EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       270 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      =-    ..+..++..+...|++-+|.++.+.....    +......++.+-.+.++...-..+++-..+
T Consensus        88 L~----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   88 LG----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             hh----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            10    14566677778888888888887765321    222234556666666666555555554444

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.47  E-value=5.8  Score=34.91  Aligned_cols=121  Identities=7%  Similarity=0.044  Sum_probs=73.3

Q ss_pred             cCCCHHHHHHHHHHHHcc-C-CHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHH
Q 014507          166 FEANIRDYTKIIHGYGKK-M-QIQNAENTLLAMK-RRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL-GEPLDKR  241 (423)
Q Consensus       166 ~~~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~~~~~  241 (423)
                      +-.|..+-..+++..... + ....-.++.+-+. +.|-.++..+...++..+++.+++.+-.++++.-... +..-|..
T Consensus       160 Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~r  239 (292)
T PF13929_consen  160 IIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPR  239 (292)
T ss_pred             eeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCc
Confidence            445666666666665552 1 2222233333333 2345567777777788888888888887777776654 4455777


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHH-----HHhCCCCCCHHHHHHHHHHHH
Q 014507          242 SYGSMVMAYVRAGMLDRGEVLLRE-----MDAQEVYVGSEVYKALLRGYS  286 (423)
Q Consensus       242 ~~~~li~~~~~~~~~~~a~~~~~~-----m~~~~~~p~~~~~~~li~~~~  286 (423)
                      .|..+|..-...||..-..++..+     +++.++..+...-..+-..+.
T Consensus       240 pW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~  289 (292)
T PF13929_consen  240 PWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFK  289 (292)
T ss_pred             hHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHH
Confidence            788888888888887666666554     234556656555555544443

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.42  E-value=2.7  Score=34.41  Aligned_cols=60  Identities=13%  Similarity=0.141  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPS--DKCVALILSACEKENQLNRALEFLIDLE  372 (423)
Q Consensus       313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~  372 (423)
                      +..+...|.+.|+.++|.+.|.++.+....|.  ...+-.+|+.+...+++..+...+.+..
T Consensus        39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~  100 (177)
T PF10602_consen   39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAE  100 (177)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            44444455555555555555555544322222  2233444444444455554444444443

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.36  E-value=4.7  Score=32.09  Aligned_cols=91  Identities=10%  Similarity=-0.159  Sum_probs=48.6

Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh
Q 014507          179 GYGKKMQIQNAENTLLAMKRRGFI-CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD  257 (423)
Q Consensus       179 ~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~  257 (423)
                      .-.+.++.++++.+++.+.-..+. |...++.  ...+.+.|++++|.++|+++.+.+  |.......|+..|.....-.
T Consensus        19 ~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~--~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~   94 (160)
T PF09613_consen   19 VALRLGDPDDAEALLDALRVLRPEFPELDLFD--GWLHIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDP   94 (160)
T ss_pred             HHHccCChHHHHHHHHHHHHhCCCchHHHHHH--HHHHHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCCh
Confidence            344566777777777777665222 1223333  333456777888888887776543  33334444555554443333


Q ss_pred             HHHHHHHHHHhCCCCC
Q 014507          258 RGEVLLREMDAQEVYV  273 (423)
Q Consensus       258 ~a~~~~~~m~~~~~~p  273 (423)
                      .-...-+++.+.+-.|
T Consensus        95 ~Wr~~A~evle~~~d~  110 (160)
T PF09613_consen   95 SWRRYADEVLESGADP  110 (160)
T ss_pred             HHHHHHHHHHhcCCCh
Confidence            3333344455554433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=92.30  E-value=5.9  Score=33.04  Aligned_cols=199  Identities=14%  Similarity=-0.029  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHhhc-ccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-H
Q 014507          137 DWLAVLKQLKLMEHPLYLQVAELALLEE-SFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVV-M  214 (423)
Q Consensus       137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~  214 (423)
                      .+......+...+....+.......... ........+......+...+++..+.+.+.........+ ......... .
T Consensus        61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  139 (291)
T COG0457          61 LLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGA  139 (291)
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHH
Confidence            3444444444444444444443333321 222333344444444444445555555555544432222 111111122 4


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 014507          215 YSKAGNLKMAEETFEEIKLLGE--PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSE  292 (423)
Q Consensus       215 ~~~~g~~~~A~~~~~~m~~~g~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  292 (423)
                      +...|+++.|...+.+......  ......+......+...++.+.+...+....+.........+..+...+...++.+
T Consensus       140 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (291)
T COG0457         140 LYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYE  219 (291)
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHH
Confidence            4455555555555555433110  01222232333333444455555555555444322112334444444555555555


Q ss_pred             HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          293 GAQRVFEAIQFAGITPD-ARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       293 ~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      .|...+......  .|+ ...+..+...+...+..+++...+....+
T Consensus       220 ~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (291)
T COG0457         220 EALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALE  264 (291)
T ss_pred             HHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence            555555544432  121 22222222233344445555544444443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.16  E-value=0.63  Score=27.87  Aligned_cols=28  Identities=18%  Similarity=0.232  Sum_probs=15.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      ++..+...|.+.|++++|.++|++..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3444555555555555555555555554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.15  E-value=2.2  Score=34.98  Aligned_cols=63  Identities=10%  Similarity=-0.015  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICD--QVTLTVMVVMYSKAGNLKMAEETFEEIKL  233 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  233 (423)
                      ..+..+...|.+.|+.+.|.+.+.++.+....+.  ...+-.+|......+++..+.....+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3455666777777777777777777666533332  23455566666667777776666665544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.00  E-value=0.92  Score=27.16  Aligned_cols=28  Identities=18%  Similarity=0.140  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRR  199 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~  199 (423)
                      ++..+...|...|++++|+++|++..+.
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3444555555555555555555555554

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.92  E-value=9.2  Score=37.86  Aligned_cols=85  Identities=12%  Similarity=0.017  Sum_probs=38.7

Q ss_pred             HcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014507          217 KAGNLKMAEETFEEIKL-------LGEPLDKRSYGSMVMAYVRAG-----MLDRGEVLLREMDAQEVYVGSEVYKALLRG  284 (423)
Q Consensus       217 ~~g~~~~A~~~~~~m~~-------~g~~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  284 (423)
                      ...|++.|+.+|+...+       .|   ......-+..+|.+..     +.+.|..++.+..+.|.+ +....-..+..
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~  336 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYE  336 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence            44456666666665554       33   2223444455554432     334455555555555432 33222222222


Q ss_pred             HHh-CCCHHHHHHHHHHHHHCC
Q 014507          285 YSM-NGNSEGAQRVFEAIQFAG  305 (423)
Q Consensus       285 ~~~-~g~~~~a~~~~~~m~~~g  305 (423)
                      ... ..+...|.++|......|
T Consensus       337 ~g~~~~d~~~A~~yy~~Aa~~G  358 (552)
T KOG1550|consen  337 TGTKERDYRRAFEYYSLAAKAG  358 (552)
T ss_pred             cCCccccHHHHHHHHHHHHHcC
Confidence            222 234455555555555554

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.82  E-value=0.38  Score=27.41  Aligned_cols=25  Identities=16%  Similarity=0.173  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          382 ASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       382 ~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      +|..|.+.|.+.|++++|.++|++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~a   25 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQA   25 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4678889999999999999999873

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=91.69  E-value=11  Score=34.88  Aligned_cols=173  Identities=10%  Similarity=-0.035  Sum_probs=112.6

Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---HH------
Q 014507          178 HGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVM--YSKAGNLKMAEETFEEIKLLGEPLDKRSYG---SM------  246 (423)
Q Consensus       178 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---~l------  246 (423)
                      .++.-.|+.++|.+.-....+..-   ...+...+++  +.-.++.+.|...|++....+  |+...-.   ..      
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~  251 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEV  251 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHH
Confidence            345567888888888877777632   2223333333  334677888888888877653  3332211   11      


Q ss_pred             ----HHHHHHcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH---HHHHH
Q 014507          247 ----VMAYVRAGMLDRGEVLLREMDAQ---EVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDAR---MCALL  316 (423)
Q Consensus       247 ----i~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~---~~~~l  316 (423)
                          .+-..+.|.+..|.+.|.+.+..   ++.|+...|........+.|+.++|+.--+...+    .|..   .|..-
T Consensus       252 ~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----iD~syikall~r  327 (486)
T KOG0550|consen  252 KKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----IDSSYIKALLRR  327 (486)
T ss_pred             HHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh----cCHHHHHHHHHH
Confidence                22235789999999999998864   4567778888888899999999999988887774    2332   23333


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC
Q 014507          317 INAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKEN  359 (423)
Q Consensus       317 i~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g  359 (423)
                      ..++...++|++|.+-|+...+..-.+ ...++.....++-++.
T Consensus       328 a~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk  371 (486)
T KOG0550|consen  328 ANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSK  371 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence            345666788999988888876643222 3455555555555443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.46  E-value=5.6  Score=31.02  Aligned_cols=77  Identities=14%  Similarity=0.088  Sum_probs=51.0

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507          177 IHGYGKKMQIQNAENTLLAMKRRGFI--CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA  253 (423)
Q Consensus       177 i~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  253 (423)
                      .....+.|++++|.+.|+.+..+-..  -....--.++.+|.+.+++++|...+++..+........-|-..+.+++.-
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~   95 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY   95 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence            34445778888888888888876211  133445567888888888888888888888865333334455555555443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=90.91  E-value=11  Score=33.48  Aligned_cols=62  Identities=10%  Similarity=-0.017  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 014507          207 TLTVMVVMYSKAGNLK---MAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ  269 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~---~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  269 (423)
                      ++..++.+|...+..+   +|.++++.+.... .-.+..+..-+..+.+.++.+.+.+.+.+|...
T Consensus        86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   86 ILRLLANAYLEWDTYESVEKALNALRLLESEY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence            4455566666655533   3444555554432 212444545555555566666667777666654

It is also involved in sporulation [].

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=90.89  E-value=2.5  Score=30.23  Aligned_cols=62  Identities=19%  Similarity=0.224  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507          326 SQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAA  388 (423)
Q Consensus       326 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~  388 (423)
                      .-++.+-++.+....+.|++......+++|.+.+++..|.++++-.+.+ ...+...|..++.
T Consensus        23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq   84 (103)
T cd00923          23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence            3355555666666677788888888888888888888888888776643 2224445665553

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.87  E-value=0.69  Score=26.29  Aligned_cols=23  Identities=26%  Similarity=0.459  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q 014507          208 LTVMVVMYSKAGNLKMAEETFEE  230 (423)
Q Consensus       208 ~~~li~~~~~~g~~~~A~~~~~~  230 (423)
                      |..|...|.+.|++++|.++|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44555555556666666655555

>PRK11906 transcriptional regulator; Provisional

Probab=90.69  E-value=15  Score=34.70  Aligned_cols=77  Identities=10%  Similarity=0.048  Sum_probs=33.6

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          293 GAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDL  371 (423)
Q Consensus       293 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m  371 (423)
                      +|.++-+...+.+ .-|......+..+....|+++.|..+|++...  +.|| ..+|......+.-.|+.++|.+.+++.
T Consensus       322 ~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a  398 (458)
T PRK11906        322 KALELLDYVSDIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKS  398 (458)
T ss_pred             HHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444444444332 22444444444444444445555555555444  2343 223333333334445555555555553


Q ss_pred             H
Q 014507          372 E  372 (423)
Q Consensus       372 ~  372 (423)
                      .
T Consensus       399 l  399 (458)
T PRK11906        399 L  399 (458)
T ss_pred             h
Confidence            3

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=90.65  E-value=5  Score=29.07  Aligned_cols=60  Identities=20%  Similarity=0.229  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507          328 KAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAA  388 (423)
Q Consensus       328 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~  388 (423)
                      +..+-++.+....+.|++......+++|.+.+++..|+++++-.+.+ ..+....|..++.
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred             HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence            45555666666778888888888888888888888888888887765 2232336666654

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.62  E-value=3.8  Score=36.33  Aligned_cols=104  Identities=14%  Similarity=0.134  Sum_probs=63.6

Q ss_pred             CCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHH
Q 014507          235 GEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE---VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDAR  311 (423)
Q Consensus       235 g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~  311 (423)
                      |......+...++..-....+++.+...+-++...-   ..|+. +-...+..+. .-+++++..++..=...|+-||..
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~-~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNW-TIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccc-cHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence            334445555556655555667777777776665531   11221 1122222222 235667777777777778888888


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507          312 MCALLINAYQMAGQSQKAYTAFQNMRKAG  340 (423)
Q Consensus       312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~  340 (423)
                      +++.+|+.+.+.+++.+|..+.-.|....
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            88888888888888888877777766543

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=90.52  E-value=11  Score=32.63  Aligned_cols=190  Identities=13%  Similarity=0.059  Sum_probs=107.1

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507          168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI--CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS  245 (423)
Q Consensus       168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~  245 (423)
                      |-...|+.-+. -.+.|++++|.+.|+.+..+.+-  -...+.-.++.++.+.++++.|....++....-......-|-.
T Consensus        33 p~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~  111 (254)
T COG4105          33 PASELYNEGLT-ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAY  111 (254)
T ss_pred             CHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHH
Confidence            34455655444 45889999999999999876321  1344556677888899999999999999988543333334555


Q ss_pred             HHHHHHHc-------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507          246 MVMAYVRA-------GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLIN  318 (423)
Q Consensus       246 li~~~~~~-------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~  318 (423)
                      -|.+.+.-       .|...+.+-+..+.+            ++.-|=...-...|..-+..+...    =...=..+.+
T Consensus       112 YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~----LA~~Em~Iar  175 (254)
T COG4105         112 YLKGLSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA----LAGHEMAIAR  175 (254)
T ss_pred             HHHHHHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH----HHHHHHHHHH
Confidence            55555421       222233333333322            111111111112222222222210    0000123456


Q ss_pred             HHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          319 AYQMAGQSQKAYTAFQNMRKA--GLEPSDKCVALILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       319 ~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      -|.+.|.+..|..-+++|.+.  .-.-....+-.+..+|...|-.++|...-+-+...
T Consensus       176 yY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         176 YYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            778888888888888888774  11112345666777788888877777766655443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.14  E-value=7.7  Score=30.43  Aligned_cols=52  Identities=13%  Similarity=0.040  Sum_probs=33.8

Q ss_pred             ccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 014507          182 KKMQIQNAENTLLAMKRRGFI-CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG  235 (423)
Q Consensus       182 ~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  235 (423)
                      ..++.+++..+++.|.-..+. +...++-.++  +...|++++|.++|++..+.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence            467788888888887665222 2333444333  457788888888888887754

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.78  E-value=4.1  Score=36.09  Aligned_cols=105  Identities=10%  Similarity=0.121  Sum_probs=64.3

Q ss_pred             hcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 014507          163 EESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR---GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD  239 (423)
Q Consensus       163 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~  239 (423)
                      ..|.+....+...++..-....+++.++..+-+++..   -..|+...+ ++++.+ ..-+.++++.++..=.+-|+-||
T Consensus        57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~d  134 (418)
T KOG4570|consen   57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFPD  134 (418)
T ss_pred             hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhccccc
Confidence            3455555556666666666667777777776666543   112222111 122222 23356677777777777777778


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 014507          240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQ  269 (423)
Q Consensus       240 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  269 (423)
                      ..+++.+|+.+.+.+++.+|.++.-.|...
T Consensus       135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            888888888888887777777776666543

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.40  E-value=15  Score=32.54  Aligned_cols=143  Identities=10%  Similarity=0.096  Sum_probs=80.3

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 014507          213 VMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSE  292 (423)
Q Consensus       213 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  292 (423)
                      ......|++.+|..+|+......- -+...--.+..+|...|+.+.|..++..+....-.........-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~-~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAP-ENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCc-ccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            344567788888888877776542 2345556677777888888888888877655432222222223344444444444


Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcC
Q 014507          293 GAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGL-EPSDKCVALILSACEKEN  359 (423)
Q Consensus       293 ~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g  359 (423)
                      +...+-...-.   .| |...-..+...+...|+.++|++.+-.+.+... .-|...=..++..+.-.|
T Consensus       221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            44444444443   34 555556666777777777777766555544211 122333344444444444

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=89.39  E-value=4  Score=33.82  Aligned_cols=78  Identities=14%  Similarity=0.124  Sum_probs=49.8

Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCcCHHHHHHHHHHHHHcCCHH
Q 014507          321 QMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD---GFMVGKEASCTLAAWFKRLGVVE  397 (423)
Q Consensus       321 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~~~~~~~~~l~~~~~~~g~~~  397 (423)
                      .+.|+ +.|.+.|-.+...+.--++..... +..|....+.+++..++.+..+.   +-.+|+..+.+|+..|.+.|+++
T Consensus       118 sr~~d-~~A~~~fL~~E~~~~l~t~elq~a-LAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e  195 (203)
T PF11207_consen  118 SRFGD-QEALRRFLQLEGTPELETAELQYA-LATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE  195 (203)
T ss_pred             hccCc-HHHHHHHHHHcCCCCCCCHHHHHH-HHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence            44444 467777777776664434444433 44444466777777777776654   33677788888888888888877


Q ss_pred             HHH
Q 014507          398 EVE  400 (423)
Q Consensus       398 ~A~  400 (423)
                      .|.
T Consensus       196 ~AY  198 (203)
T PF11207_consen  196 QAY  198 (203)
T ss_pred             hhh
Confidence            764

>PRK11619 lytic murein transglycosylase; Provisional

Probab=89.16  E-value=27  Score=35.29  Aligned_cols=134  Identities=6%  Similarity=-0.019  Sum_probs=66.2

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHHHHHHhcCChhhhh-hhH-HHHHHHHhccCCCCCHHHH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTK-RCK-AFVKQIICVSPETGNLSDL  123 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~-~~~-~~~~~ll~~~~~~g~~~~a  123 (423)
                      +++|++..+..+  ..++...-+.   +...|-.+.........+.+..++++-+. |-. ..-...+..+.+.++++..
T Consensus        44 ~~~g~~~~~~~~--~~~l~d~pL~---~yl~y~~L~~~l~~~~~~ev~~Fl~~~~~~P~~~~Lr~~~l~~La~~~~w~~~  118 (644)
T PRK11619         44 WDNRQMDVVEQL--MPTLKDYPLY---PYLEYRQLTQDLMNQPAVQVTNFIRANPTLPPARSLQSRFVNELARREDWRGL  118 (644)
T ss_pred             HHCCCHHHHHHH--HHhccCCCcH---hHHHHHHHHhccccCCHHHHHHHHHHCCCCchHHHHHHHHHHHHHHccCHHHH
Confidence            788887777666  3333322222   22344444444333333444444444433 111 1122233344467788877


Q ss_pred             HHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCH
Q 014507          124 LAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQI  186 (423)
Q Consensus       124 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  186 (423)
                      ++ |..-...+..--.....+....|+.+.+......+-..| ...+..++.++..+.+.|.+
T Consensus       119 ~~-~~~~~p~~~~~~c~~~~A~~~~G~~~~A~~~a~~lW~~g-~~~p~~cd~l~~~~~~~g~l  179 (644)
T PRK11619        119 LA-FSPEKPKPVEARCNYYYAKWATGQQQEAWQGAKELWLTG-KSLPNACDKLFSVWQQSGKQ  179 (644)
T ss_pred             HH-hcCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-CCCChHHHHHHHHHHHcCCC
Confidence            77 332233444444566667777777665544444333333 22344566666666655543

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=88.46  E-value=7.7  Score=28.15  Aligned_cols=46  Identities=17%  Similarity=0.107  Sum_probs=26.5

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507          259 GEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA  304 (423)
Q Consensus       259 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  304 (423)
                      ..+-+..+...++.|++.+..+.+.+|.+.+++..|.++|+.++.+
T Consensus        29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            4444555555566666666666667777777777777766666543

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=88.44  E-value=38  Score=36.04  Aligned_cols=80  Identities=16%  Similarity=0.076  Sum_probs=43.5

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHH
Q 014507          318 NAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVE  397 (423)
Q Consensus       318 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~  397 (423)
                      ..+...+.+++|.-.|+..-+         ..-.+.+|...|++.+|..+..++.... .--..+-..|+.-+...|+.-
T Consensus       947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~-de~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen  947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGK-DELVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred             HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCH-HHHHHHHHHHHHHHHHcccch
Confidence            333445566666655554321         2234566666677777766666554221 011112245666777777777


Q ss_pred             HHHHHHHHhc
Q 014507          398 EVEHVLREYG  407 (423)
Q Consensus       398 ~A~~~~~~m~  407 (423)
                      +|-++..+-.
T Consensus      1017 eAa~il~e~~ 1026 (1265)
T KOG1920|consen 1017 EAAKILLEYL 1026 (1265)
T ss_pred             hHHHHHHHHh
Confidence            7777766543

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=88.37  E-value=17  Score=32.06  Aligned_cols=137  Identities=11%  Similarity=0.129  Sum_probs=82.4

Q ss_pred             hhHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHhC-C-CHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507          256 LDRGEVLLREMDA-QEVYVGSEVYKALLRGYSMN-G-NSEGAQRVFEAIQF-AGITPDARMCALLINAYQMAGQSQKAYT  331 (423)
Q Consensus       256 ~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~-g-~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~  331 (423)
                      +.+|+++|+...- ..+--|..+...+++..... + ....-.++.+-+.. .|-.++..+.-.+|..++..++|.+-.+
T Consensus       144 Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~  223 (292)
T PF13929_consen  144 VVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQ  223 (292)
T ss_pred             HHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHH
Confidence            3445555542221 22344666666666665552 2 22233344444443 2346677777788888888888888888


Q ss_pred             HHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHCCCCcCHHHHHHHHHHHHH
Q 014507          332 AFQNMRKA-GLEPSDKCVALILSACEKENQLNRALEFLID-----LERDGFMVGKEASCTLAAWFKR  392 (423)
Q Consensus       332 ~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~~~~~~~~~l~~~~~~  392 (423)
                      +|+.-... +..-|...|..+|+.....|+..-..++.++     +++.|+..+...-..+-+.+.+
T Consensus       224 fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~  290 (292)
T PF13929_consen  224 FWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKK  290 (292)
T ss_pred             HHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHh
Confidence            88877654 4455777788888888888887666555553     2344566666665555555443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=88.14  E-value=1.7  Score=24.06  Aligned_cols=27  Identities=26%  Similarity=0.215  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          312 MCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       312 ~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      +|..+..+|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            344444445555555555555544443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK11906 transcriptional regulator; Provisional

Probab=88.00  E-value=25  Score=33.39  Aligned_cols=131  Identities=11%  Similarity=0.044  Sum_probs=68.8

Q ss_pred             HHH--HHHHHHHHcc-----CCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHH---------cCCHHHHHHHHHHHH
Q 014507          171 RDY--TKIIHGYGKK-----MQIQNAENTLLAMKRR-GFICD-QVTLTVMVVMYSK---------AGNLKMAEETFEEIK  232 (423)
Q Consensus       171 ~~~--~~li~~~~~~-----~~~~~a~~~~~~m~~~-g~~p~-~~~~~~li~~~~~---------~g~~~~A~~~~~~m~  232 (423)
                      ..|  ...+++....     ...+.|..+|.+.... .+.|+ ...|..+...+..         ..+..+|.++-+...
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            445  5555555442     2345677778777721 22333 3333333222211         122345555555555


Q ss_pred             HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507          233 LLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       233 ~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  303 (423)
                      +.+ ..|......+..+....++++.|...|++....+.. ...+|......+.-+|+.++|.+.+++..+
T Consensus       332 eld-~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alr  400 (458)
T PRK11906        332 DIT-TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQ  400 (458)
T ss_pred             hcC-CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            554 446666666666666666677777777766664332 233444444445556666666666666443

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=87.97  E-value=15  Score=30.99  Aligned_cols=29  Identities=10%  Similarity=0.134  Sum_probs=15.2

Q ss_pred             HHHHHHhccCCCCCHHHHHHHHHHhcCCC
Q 014507          106 FVKQIICVSPETGNLSDLLAAWVRFMKPR  134 (423)
Q Consensus       106 ~~~~ll~~~~~~g~~~~a~~~~~~~~~p~  134 (423)
                      .+|-+--.+...|+++.|.+.|+...+.|
T Consensus       101 vfNyLG~Yl~~a~~fdaa~eaFds~~ELD  129 (297)
T COG4785         101 VFNYLGIYLTQAGNFDAAYEAFDSVLELD  129 (297)
T ss_pred             HHHHHHHHHHhcccchHHHHHhhhHhccC
Confidence            44444445555566666666665554433

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.95  E-value=12  Score=29.82  Aligned_cols=18  Identities=11%  Similarity=0.270  Sum_probs=9.6

Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 014507          321 QMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       321 ~~~g~~~~a~~~~~~m~~  338 (423)
                      ...|+|.+|..+|+++.+
T Consensus        55 i~r~~w~dA~rlLr~l~~   72 (160)
T PF09613_consen   55 IVRGDWDDALRLLRELEE   72 (160)
T ss_pred             HHhCCHHHHHHHHHHHhc
Confidence            445555555555555544

>PHA02875 ankyrin repeat protein; Provisional

Probab=87.38  E-value=11  Score=35.79  Aligned_cols=207  Identities=12%  Similarity=0.033  Sum_probs=93.8

Q ss_pred             CCCCCHHHHHHHHHHhcCCChhh--HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHH--HHHHHHHHHHccCCHHHHH
Q 014507          115 PETGNLSDLLAAWVRFMKPRRAD--WLAVLKQLKLMEHPLYLQVAELALLEESFEANIR--DYTKIIHGYGKKMQIQNAE  190 (423)
Q Consensus       115 ~~~g~~~~a~~~~~~~~~p~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~  190 (423)
                      +..|+.+.+..+++.+..|+...  ..+.+..++..|+.+.+    +.+.+.|..|+..  .....+...+..|+.+.+.
T Consensus        10 ~~~g~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v----~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~   85 (413)
T PHA02875         10 ILFGELDIARRLLDIGINPNFEIYDGISPIKLAMKFRDSEAI----KLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVE   85 (413)
T ss_pred             HHhCCHHHHHHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHH----HHHHhCCCCccccCCCcccHHHHHHHCCCHHHHH
Confidence            34577777777777666555422  23445555566665544    3344555544432  1223455556778877766


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHHcCChhHHHHHHHHHH
Q 014507          191 NTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKR---SYGSMVMAYVRAGMLDRGEVLLREMD  267 (423)
Q Consensus       191 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~  267 (423)
                      .+++.-....-..+..-. +.+...+..|+.+-+    +.+.+.|..|+..   -.+. +...+..|+.+.+..++    
T Consensus        86 ~Ll~~~~~~~~~~~~~g~-tpL~~A~~~~~~~iv----~~Ll~~gad~~~~~~~g~tp-Lh~A~~~~~~~~v~~Ll----  155 (413)
T PHA02875         86 ELLDLGKFADDVFYKDGM-TPLHLATILKKLDIM----KLLIARGADPDIPNTDKFSP-LHLAVMMGDIKGIELLI----  155 (413)
T ss_pred             HHHHcCCcccccccCCCC-CHHHHHHHhCCHHHH----HHHHhCCCCCCCCCCCCCCH-HHHHHHcCCHHHHHHHH----
Confidence            555432111000011112 233334456665433    4444555544332   2233 33344566655444443    


Q ss_pred             hCCCCCCH---HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507          268 AQEVYVGS---EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARM---CALLINAYQMAGQSQKAYTAFQNMRKAGL  341 (423)
Q Consensus       268 ~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~  341 (423)
                      +.|..++.   .-.+ .+...+..|+.+    +.+.+.+.|..++...   ..+.+...+..|+.+-    .+.+.+.|.
T Consensus       156 ~~g~~~~~~d~~g~T-pL~~A~~~g~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~i----v~~Ll~~ga  226 (413)
T PHA02875        156 DHKACLDIEDCCGCT-PLIIAMAKGDIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKIDI----VRLFIKRGA  226 (413)
T ss_pred             hcCCCCCCCCCCCCC-HHHHHHHcCCHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHHH----HHHHHHCCc
Confidence            33433221   1112 233344456654    3344455555554322   1234443455566543    333344554


Q ss_pred             CCC
Q 014507          342 EPS  344 (423)
Q Consensus       342 ~p~  344 (423)
                      .++
T Consensus       227 d~n  229 (413)
T PHA02875        227 DCN  229 (413)
T ss_pred             Ccc
Confidence            444

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=87.06  E-value=29  Score=33.26  Aligned_cols=179  Identities=9%  Similarity=0.075  Sum_probs=109.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR  283 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  283 (423)
                      |....-+++..+.++-.+.-++.+..+|..-|  -+...|..++.+|..+ ..+.-..+|+++.+.... |...-..|..
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            55566677777777777777888888887765  3667777788888777 556777777777776554 4444444444


Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHH
Q 014507          284 GYSMNGNSEGAQRVFEAIQFAGITP-----DARMCALLINAYQMAGQSQKAYTAFQNMRK-AGLEPSDKCVALILSACEK  357 (423)
Q Consensus       284 ~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~  357 (423)
                      -|-+ ++.+.+...|.+....=++.     =...|.-++..  -..+.+..+.+...+.+ .|..--...+.-+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            4444 77777777777766542211     12245554432  13456666666666655 3333344555666666777


Q ss_pred             cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 014507          358 ENQLNRALEFLIDLERDGFMVGKEASCTLAAWF  390 (423)
Q Consensus       358 ~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~  390 (423)
                      ..++++|.+++..+.+.. .-|...-..++..+
T Consensus       218 ~eN~~eai~Ilk~il~~d-~k~~~ar~~~i~~l  249 (711)
T COG1747         218 NENWTEAIRILKHILEHD-EKDVWARKEIIENL  249 (711)
T ss_pred             ccCHHHHHHHHHHHhhhc-chhhhHHHHHHHHH
Confidence            777888888877776652 23444444444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=86.89  E-value=13  Score=29.03  Aligned_cols=56  Identities=21%  Similarity=0.172  Sum_probs=34.1

Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          284 GYSMNGNSEGAQRVFEAIQFAGI--TPDARMCALLINAYQMAGQSQKAYTAFQNMRKA  339 (423)
Q Consensus       284 ~~~~~g~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  339 (423)
                      ...+.|++++|.+.|+.+..+-.  .-....--.++.+|.+.|++++|...+++.++.
T Consensus        19 ~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   19 EALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            34455677777777777665410  113344455667777777777777777777663

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.87  E-value=15  Score=35.82  Aligned_cols=99  Identities=21%  Similarity=0.228  Sum_probs=58.6

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 014507          216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQ  295 (423)
Q Consensus       216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  295 (423)
                      .+.|+++.|.++..+..      +..-|..|.++....+++..|.+.|....+         |..|+-.+...|+.+...
T Consensus       648 l~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~  712 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLA  712 (794)
T ss_pred             hhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHH
Confidence            45566666666554432      455677777777777777777776655444         334555666666666555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          296 RVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQN  335 (423)
Q Consensus       296 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  335 (423)
                      .+-....+.|. .     |....+|...|+++++.+++.+
T Consensus       713 ~la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  713 VLASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             HHHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence            55555555442 1     2333455566777777766554

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.54  E-value=13  Score=30.82  Aligned_cols=73  Identities=18%  Similarity=0.053  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhCCCHHHHH
Q 014507          222 KMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ---EVYVGSEVYKALLRGYSMNGNSEGAQ  295 (423)
Q Consensus       222 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~  295 (423)
                      +.|.+.|-++...+..-++.....|...|. ..|.+++..++.+..+.   +-.+|+..+.+|++.+.+.|+++.|.
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            566777777766664445544444444444 55667777777666542   33566777777777777777777664

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=86.47  E-value=16  Score=29.61  Aligned_cols=133  Identities=13%  Similarity=0.115  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ-VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKR-SYGSMVM  248 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~  248 (423)
                      ..|...++. .+.+..++|+.-|..+.+-|..--+ ...-.......+.|+...|...|++.-...-.|-.. -...|=.
T Consensus        60 d~flaAL~l-A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlra  138 (221)
T COG4649          60 DAFLAALKL-AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRA  138 (221)
T ss_pred             HHHHHHHHH-HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHH
Confidence            344444443 4566777777777777776544211 111223344556777777777777776643333322 1112222


Q ss_pred             H--HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507          249 A--YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA  304 (423)
Q Consensus       249 ~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  304 (423)
                      +  +..+|-++++....+.+-..+-+.-...-..|--+-.+.|++.+|...|..+...
T Consensus       139 a~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D  196 (221)
T COG4649         139 AYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND  196 (221)
T ss_pred             HHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence            2  3355667776666666655544444445556666666777777777777766653

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.24  E-value=37  Score=33.66  Aligned_cols=183  Identities=13%  Similarity=0.028  Sum_probs=112.7

Q ss_pred             hHHHHHHHHHhhcccCCCHH-HHHHHHHH-HHccCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHcC---
Q 014507          152 LYLQVAELALLEESFEANIR-DYTKIIHG-YGKKMQIQNAENTLLAMKR-------RGFICDQVTLTVMVVMYSKAG---  219 (423)
Q Consensus       152 ~~a~~~~~~~~~~~~~~~~~-~~~~li~~-~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~li~~~~~~g---  219 (423)
                      ..+..+++...+.|..-... .-.....+ +....+.+.|...|+...+       .|   +......+..+|.+..   
T Consensus       229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~  305 (552)
T KOG1550|consen  229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVE  305 (552)
T ss_pred             hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCc
Confidence            45566666666655321111 11122223 4567899999999999877       55   3346667777887743   


Q ss_pred             --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH--hCCCHHHH
Q 014507          220 --NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR-AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS--MNGNSEGA  294 (423)
Q Consensus       220 --~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a  294 (423)
                        +.+.|..+|.+..+.| .|+....-..+..... ..+...|.+.|...-+.|.. ...-+..++....  -..+.+.|
T Consensus       306 ~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~-~A~~~la~~y~~G~gv~r~~~~A  383 (552)
T KOG1550|consen  306 KIDYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI-LAIYRLALCYELGLGVERNLELA  383 (552)
T ss_pred             cccHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh-HHHHHHHHHHHhCCCcCCCHHHH
Confidence              6677999999999887 4455544333332222 24677999999999998865 2222222222222  33478889


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507          295 QRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGL  341 (423)
Q Consensus       295 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  341 (423)
                      ..++.+..+.| .|...---..+..+.. ++++.+.-.+..+.+.|.
T Consensus       384 ~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g~  428 (552)
T KOG1550|consen  384 FAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELGY  428 (552)
T ss_pred             HHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence            99999988887 3332222233334444 788888888888877664

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=86.11  E-value=2.3  Score=24.64  Aligned_cols=27  Identities=22%  Similarity=0.298  Sum_probs=15.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          311 RMCALLINAYQMAGQSQKAYTAFQNMR  337 (423)
Q Consensus       311 ~~~~~li~~~~~~g~~~~a~~~~~~m~  337 (423)
                      .+++.+...|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            355556666666666666666666554

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=86.08  E-value=25  Score=32.63  Aligned_cols=62  Identities=10%  Similarity=0.074  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKLLG--EPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDA  268 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  268 (423)
                      .+.-+...|..+|+++.|++.|-+.++--  .+.....|-.+|..-.-.|+|..+.....+...
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~s  215 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAES  215 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHh
Confidence            34445555556666666666665543321  011222333444444445555555555444443

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=85.81  E-value=0.25  Score=38.91  Aligned_cols=83  Identities=14%  Similarity=0.198  Sum_probs=40.1

Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507          281 LLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ  360 (423)
Q Consensus       281 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  360 (423)
                      +++.+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++...  +     .-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcch
Confidence            344445555555555555555554433445555566666666555555555544111  1     112234455555555


Q ss_pred             HHHHHHHHHH
Q 014507          361 LNRALEFLID  370 (423)
Q Consensus       361 ~~~a~~~~~~  370 (423)
                      ++.+..++.+
T Consensus        86 ~~~a~~Ly~~   95 (143)
T PF00637_consen   86 YEEAVYLYSK   95 (143)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            5555555544

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.56  E-value=14  Score=36.06  Aligned_cols=97  Identities=21%  Similarity=0.150  Sum_probs=49.1

Q ss_pred             HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507          252 RAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYT  331 (423)
Q Consensus       252 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  331 (423)
                      +.|+++.|.++..+.      -+..-|..|-++..+.+++..|.+.|.....         |..|+-.+...|+-+....
T Consensus       649 ~lgrl~iA~~la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~  713 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV  713 (794)
T ss_pred             hcCcHHHHHHHHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence            445555554443221      1444566666666666666666666655442         2344555555555555444


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507          332 AFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLI  369 (423)
Q Consensus       332 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  369 (423)
                      +-....+.|. -     |...-++...|+++++.+++.
T Consensus       714 la~~~~~~g~-~-----N~AF~~~~l~g~~~~C~~lLi  745 (794)
T KOG0276|consen  714 LASLAKKQGK-N-----NLAFLAYFLSGDYEECLELLI  745 (794)
T ss_pred             HHHHHHhhcc-c-----chHHHHHHHcCCHHHHHHHHH
Confidence            4444444442 1     222333445566666665554

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=85.41  E-value=1.2  Score=24.89  Aligned_cols=20  Identities=30%  Similarity=0.315  Sum_probs=8.1

Q ss_pred             HHHHHHHHHHHHHcCCHHHH
Q 014507          310 ARMCALLINAYQMAGQSQKA  329 (423)
Q Consensus       310 ~~~~~~li~~~~~~g~~~~a  329 (423)
                      ...|+.+...|...|++++|
T Consensus        13 ~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   13 AEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHHHHHHHHCcCHHhh
Confidence            33344444444444444433

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=85.41  E-value=17  Score=31.94  Aligned_cols=20  Identities=10%  Similarity=0.051  Sum_probs=9.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHH
Q 014507          317 INAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       317 i~~~~~~g~~~~a~~~~~~m  336 (423)
                      |-.|.+.|++..+.++-..-
T Consensus       125 ILLysKv~Ep~amlev~~~W  144 (309)
T PF07163_consen  125 ILLYSKVQEPAAMLEVASAW  144 (309)
T ss_pred             HHHHHHhcCHHHHHHHHHHH
Confidence            33444455544444444333

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=85.26  E-value=2.7  Score=24.28  Aligned_cols=26  Identities=27%  Similarity=0.312  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIK  232 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~  232 (423)
                      +++.+...|...|++++|..++++..
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            44555555555555555555555544

>PHA02875 ankyrin repeat protein; Provisional

Probab=85.01  E-value=18  Score=34.22  Aligned_cols=211  Identities=14%  Similarity=0.048  Sum_probs=105.2

Q ss_pred             HHHhcCCchHHHHHHHHHhhcccCCCHHH--HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcC
Q 014507          144 QLKLMEHPLYLQVAELALLEESFEANIRD--YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQV--TLTVMVVMYSKAG  219 (423)
Q Consensus       144 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g  219 (423)
                      ..+..|+.+.+    +.+++.|..|+...  ..+.+..++..|+.+-+.    .+.+.|..|+..  ...+.+...+..|
T Consensus         8 ~A~~~g~~~iv----~~Ll~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~----~Ll~~ga~~~~~~~~~~t~L~~A~~~g   79 (413)
T PHA02875          8 DAILFGELDIA----RRLLDIGINPNFEIYDGISPIKLAMKFRDSEAIK----LLMKHGAIPDVKYPDIESELHDAVEEG   79 (413)
T ss_pred             HHHHhCCHHHH----HHHHHCCCCCCccCCCCCCHHHHHHHcCCHHHHH----HHHhCCCCccccCCCcccHHHHHHHCC
Confidence            33455665544    44456677666533  334556667778876444    444556555432  1123455556889


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH--HHHHHHHHHhCCCHHHHHHH
Q 014507          220 NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEV--YKALLRGYSMNGNSEGAQRV  297 (423)
Q Consensus       220 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~~~li~~~~~~g~~~~a~~~  297 (423)
                      +.+.+..+++.-....-..+....+.| ...+..|+.    ++++.+.+.|..|+...  -.+.+...+..|+.+-+..+
T Consensus        80 ~~~~v~~Ll~~~~~~~~~~~~~g~tpL-~~A~~~~~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~L  154 (413)
T PHA02875         80 DVKAVEELLDLGKFADDVFYKDGMTPL-HLATILKKL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELL  154 (413)
T ss_pred             CHHHHHHHHHcCCcccccccCCCCCHH-HHHHHhCCH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHH
Confidence            888776665432110000111112333 334455665    44455556666554321  12344555677887655555


Q ss_pred             HHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          298 FEAIQFAGITPD---ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKC---VALILSACEKENQLNRALEFLIDL  371 (423)
Q Consensus       298 ~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m  371 (423)
                      +    +.|..++   ..-++.+. ..+..|+.+-    .+.+.+.|..|+...   ...++...+..|+.+    +.+.+
T Consensus       155 l----~~g~~~~~~d~~g~TpL~-~A~~~g~~ei----v~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~L  221 (413)
T PHA02875        155 I----DHKACLDIEDCCGCTPLI-IAMAKGDIAI----CKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLF  221 (413)
T ss_pred             H----hcCCCCCCCCCCCCCHHH-HHHHcCCHHH----HHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHH
Confidence            4    3443332   22233333 3455676653    444555666555322   123444445666654    44555


Q ss_pred             HHCCCCcCH
Q 014507          372 ERDGFMVGK  380 (423)
Q Consensus       372 ~~~g~~~~~  380 (423)
                      .+.|..++.
T Consensus       222 l~~gad~n~  230 (413)
T PHA02875        222 IKRGADCNI  230 (413)
T ss_pred             HHCCcCcch
Confidence            566776654

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=84.71  E-value=1.5  Score=24.50  Aligned_cols=20  Identities=15%  Similarity=0.285  Sum_probs=7.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHH
Q 014507          205 QVTLTVMVVMYSKAGNLKMA  224 (423)
Q Consensus       205 ~~~~~~li~~~~~~g~~~~A  224 (423)
                      ...|+.+...|...|++++|
T Consensus        13 ~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   13 AEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHHHHHHHHCcCHHhh
Confidence            33334444444444443333

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=84.53  E-value=3.3  Score=22.66  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=10.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          314 ALLINAYQMAGQSQKAYTAFQNMR  337 (423)
Q Consensus       314 ~~li~~~~~~g~~~~a~~~~~~m~  337 (423)
                      ..+..++...|++++|.+.|++..
T Consensus         5 ~~lg~~~~~~~~~~~A~~~~~~al   28 (34)
T PF07719_consen    5 YYLGQAYYQLGNYEEAIEYFEKAL   28 (34)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHH
Confidence            334444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=83.63  E-value=0.36  Score=37.96  Aligned_cols=51  Identities=8%  Similarity=0.069  Sum_probs=21.0

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014507          214 MYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLR  264 (423)
Q Consensus       214 ~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~  264 (423)
                      .+.+.+.++....+++.+...+...+....+.++..|++.++.+...++++
T Consensus        16 ~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   16 AFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             HCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            333344444444444444443333334444444444444444444444433

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.76  E-value=4.8  Score=22.07  Aligned_cols=25  Identities=16%  Similarity=0.154  Sum_probs=10.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          208 LTVMVVMYSKAGNLKMAEETFEEIK  232 (423)
Q Consensus       208 ~~~li~~~~~~g~~~~A~~~~~~m~  232 (423)
                      |..+...|...|++++|+..|++..
T Consensus         4 ~~~~g~~~~~~~~~~~A~~~~~~al   28 (34)
T PF00515_consen    4 YYNLGNAYFQLGDYEEALEYYQRAL   28 (34)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHH
Confidence            3344444444444444444444443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=82.72  E-value=22  Score=31.24  Aligned_cols=89  Identities=15%  Similarity=0.101  Sum_probs=51.2

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--
Q 014507          175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR--  252 (423)
Q Consensus       175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~--  252 (423)
                      .=|.+++..++|.++....-+--+.--+.........|-.|++.+++..+.++-......--.-+...|.++...|..  
T Consensus        88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~V  167 (309)
T PF07163_consen   88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHV  167 (309)
T ss_pred             hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHH
Confidence            346777777777777655444332211112344455566667777777777776666653222333447766666654  


Q ss_pred             ---cCChhHHHHHH
Q 014507          253 ---AGMLDRGEVLL  263 (423)
Q Consensus       253 ---~~~~~~a~~~~  263 (423)
                         .|.+++|+++.
T Consensus       168 LlPLG~~~eAeelv  181 (309)
T PF07163_consen  168 LLPLGHFSEAEELV  181 (309)
T ss_pred             HhccccHHHHHHHH
Confidence               46777776665

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=82.45  E-value=16  Score=26.45  Aligned_cols=78  Identities=12%  Similarity=0.084  Sum_probs=38.7

Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          256 LDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQN  335 (423)
Q Consensus       256 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  335 (423)
                      .++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+.+.    .||...|-++..  .+.|..+++..-+.+
T Consensus        21 HqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~----~pdlepw~ALce--~rlGl~s~l~~rl~r   93 (115)
T TIGR02508        21 HQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLC----YPDLEPWLALCE--WRLGLGSALESRLNR   93 (115)
T ss_pred             HHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCC----CchHHHHHHHHH--HhhccHHHHHHHHHH
Confidence            34455544444443321 12222222344555666666666655552    566666655543  345555555555555


Q ss_pred             HHHCC
Q 014507          336 MRKAG  340 (423)
Q Consensus       336 m~~~~  340 (423)
                      |..+|
T Consensus        94 la~sg   98 (115)
T TIGR02508        94 LAASG   98 (115)
T ss_pred             HHhCC
Confidence            55554

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=81.83  E-value=48  Score=31.40  Aligned_cols=205  Identities=17%  Similarity=0.160  Sum_probs=127.5

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHHHHHHH----cCCHHHHHHHHHHHHHcCCCC
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTL-------TVMVVMYSK----AGNLKMAEETFEEIKLLGEPL  238 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-------~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~  238 (423)
                      ..+|..++....+.++...|.+.+.-+.....  +...-       ..+-+..+.    .-+...-+.+|.......+..
T Consensus       298 i~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp--~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDr  375 (549)
T PF07079_consen  298 IDRFGNLLSFKVKQVQTEEAKQYLALLKILDP--RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDR  375 (549)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC--cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccH
Confidence            45788888899999999999998888776532  22211       112222221    112333455555555544321


Q ss_pred             CHHHHHHHHHH---HHHcCC-hhHHHHHHHHHHhCCCCCCHHHHHHH----HHHHHh---CCCHHHHHHHHHHHHHCCCC
Q 014507          239 DKRSYGSMVMA---YVRAGM-LDRGEVLLREMDAQEVYVGSEVYKAL----LRGYSM---NGNSEGAQRVFEAIQFAGIT  307 (423)
Q Consensus       239 ~~~~~~~li~~---~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~l----i~~~~~---~g~~~~a~~~~~~m~~~g~~  307 (423)
                      . ..-.-|+.+   +-+.|. -++|.++++...+-... |...-|.+    =.+|.+   ...+.+-..+-+.+.+.|+.
T Consensus       376 q-QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y-D~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~  453 (549)
T PF07079_consen  376 Q-QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY-DIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLT  453 (549)
T ss_pred             H-HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCC
Confidence            1 122223332   334454 77889999888773211 33222222    122322   23455566666777788887


Q ss_pred             CC----HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHH
Q 014507          308 PD----ARMCALLINA--YQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKE  381 (423)
Q Consensus       308 p~----~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~  381 (423)
                      |-    ...-|.+.++  +..+|++.++.-.-..+.+  +.|++.+|..+.-......++++|..++..     ++|+..
T Consensus       454 ~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~-----LP~n~~  526 (549)
T PF07079_consen  454 PITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQK-----LPPNER  526 (549)
T ss_pred             cccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHh-----CCCchh
Confidence            73    3445555544  5678999998877666665  789999999999899999999999999987     678877


Q ss_pred             HHHH
Q 014507          382 ASCT  385 (423)
Q Consensus       382 ~~~~  385 (423)
                      ++++
T Consensus       527 ~~ds  530 (549)
T PF07079_consen  527 MRDS  530 (549)
T ss_pred             hHHH
Confidence            7764

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PRK09687 putative lyase; Provisional

Probab=80.87  E-value=41  Score=29.98  Aligned_cols=236  Identities=11%  Similarity=0.002  Sum_probs=123.9

Q ss_pred             cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCH----HHHHHHHHHHHHcCCCCCHH
Q 014507          131 MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQI----QNAENTLLAMKRRGFICDQV  206 (423)
Q Consensus       131 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----~~a~~~~~~m~~~g~~p~~~  206 (423)
                      ..+|.......+.++...|..+-...+.. +..   .+|...=...+.+++..|+.    +++...+..+...  .++..
T Consensus        33 ~d~d~~vR~~A~~aL~~~~~~~~~~~l~~-ll~---~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~  106 (280)
T PRK09687         33 DDHNSLKRISSIRVLQLRGGQDVFRLAIE-LCS---SKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSAC  106 (280)
T ss_pred             hCCCHHHHHHHHHHHHhcCcchHHHHHHH-HHh---CCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHH
Confidence            34555555555555655554333333222 222   23444444455556666552    4566666655333  23555


Q ss_pred             HHHHHHHHHHHcCCH-----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 014507          207 TLTVMVVMYSKAGNL-----KMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKAL  281 (423)
Q Consensus       207 ~~~~li~~~~~~g~~-----~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  281 (423)
                      +-...+.++...+..     ..+...+.....   .++..+-...+.++.+.++ +.+...+-.+.+.   ++..+-...
T Consensus       107 VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A  179 (280)
T PRK09687        107 VRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWA  179 (280)
T ss_pred             HHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHH
Confidence            555555555554321     233333333332   3355555566677777666 3455555555542   344555555


Q ss_pred             HHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507          282 LRGYSMNG-NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ  360 (423)
Q Consensus       282 i~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  360 (423)
                      +.++.+.+ +.+.+...+..+..   .++...-...+.++.+.|+. .|...+-...+.+   +  .....+.++...|.
T Consensus       180 ~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~---~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        180 AFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG---T--VGDLIIEAAGELGD  250 (280)
T ss_pred             HHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC---c--hHHHHHHHHHhcCC
Confidence            66666543 23345555555543   45666667777777777774 4555444444432   2  23456777777777


Q ss_pred             HHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 014507          361 LNRALEFLIDLERDGFMVGKEASCTLAAWFK  391 (423)
Q Consensus       361 ~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~  391 (423)
                      . +|...+..+.+.  .||..+-...+.++.
T Consensus       251 ~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~  278 (280)
T PRK09687        251 K-TLLPVLDTLLYK--FDDNEIITKAIDKLK  278 (280)
T ss_pred             H-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence            4 577777777653  246665555555543

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=80.56  E-value=3  Score=21.57  Aligned_cols=22  Identities=32%  Similarity=0.332  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHH
Q 014507          383 SCTLAAWFKRLGVVEEVEHVLR  404 (423)
Q Consensus       383 ~~~l~~~~~~~g~~~~A~~~~~  404 (423)
                      ...+...+...|++++|..+++
T Consensus         4 ~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    4 RLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHh
Confidence            3445666667777777766654

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.24  E-value=4.9  Score=21.90  Aligned_cols=28  Identities=25%  Similarity=0.132  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          381 EASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       381 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      ..+..+...+.+.|++++|.+.|++..+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            4567788889999999999999987644

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	423
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-16
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 79.1 bits (193), Expect = 6e-16
 Identities = 36/281 (12%), Positives = 83/281 (29%), Gaps = 16/281 (5%)

Query: 116 ETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTK 175
                      W + ++  +      +++LK     +  Q  E   L    +   R  +K
Sbjct: 15  AKDATPVPCGRWAKILEKDKRTQQMRMQRLKAK-LQMPFQSGEFKALTRRLQVEPRLLSK 73

Query: 176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG 235
            + G  +    Q  E+             +  L  ++       +L + +    +     
Sbjct: 74  QMAGCLEDCTRQAPESP-----------WEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQ 122

Query: 236 EPLDKRSYGSMVMAYVRAGMLDRGEVLL---REMDAQEVYVGSEVYKALLRGYSMNGNSE 292
               ++   +     +    L     LL        +   +  ++Y A++ G++  G  +
Sbjct: 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFK 182

Query: 293 GAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAY-TAFQNMRKAGLEPSDKCVALI 351
               V   ++ AG+TPD    A  +       Q         + M + GL+      A++
Sbjct: 183 ELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVL 242

Query: 352 LSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR 392
           LS  ++   L    +          +     +  L      
Sbjct: 243 LSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYA 283

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.3 bits (101), Expect = 1e-04
 Identities = 72/496 (14%), Positives = 140/496 (28%), Gaps = 183/496 (36%)

Query: 11  RSYSAYQVFDE--ITAPKPGLRLSWRNLSLHRKPAKW-----------SRSLRSGPALEA 57
           R Y+  QVF +  ++  +P L+L  R   L  +PAK            +  +    AL+ 
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKL--RQALLELRPAKNVLIDGVLGSGKT-WV----ALDV 170

Query: 58  IKAEDMGKTQVKDDTSMFTWI--------------------QIGPNIT------------ 85
             +    K Q K D  +F W+                    QI PN T            
Sbjct: 171 CLSY---KVQCKMDFKIF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR 226

Query: 86  -EEQKQAISQ-FPRKMTKRC-------------KAF----------------------VK 108
               +  + +    K  + C              AF                        
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Query: 109 QIICVSPETGNLS-----DLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLE 163
             I +   +  L+      LL  ++   +P+       L +  L  +P  L +       
Sbjct: 287 THISLDHHSMTLTPDEVKSLLLKYLD-CRPQD------LPREVLTTNPRRLSI------- 332

Query: 164 ESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKM 223
                +IRD       + K +                  CD++T  +             
Sbjct: 333 --IAESIRDGLATWDNW-KHVN-----------------CDKLTTII------------- 359

Query: 224 AEETFEEIKLLGEPLDKRSYGSMVM----AYVRAGMLDRGEVLLREMDAQEVYVGSEVYK 279
             E+   + +L     ++ +  + +    A++   +L    ++  ++   +V     V  
Sbjct: 360 --ESS--LNVLEPAEYRKMFDRLSVFPPSAHIPTILL---SLIWFDVIKSDV----MVVV 408

Query: 280 ALLRGYSM-NGNSEGAQRVFEAIQFAGITPDARMCAL---LINAYQMAGQSQKAYTAFQN 335
             L  YS+     + +     +I            AL   +++ Y +     K +    +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI----PKTF----D 460

Query: 336 MRKAGLEPSDKCVAL-I---LSACEKENQLNRALEFLIDLERDGFMVGK-EASCTLAAWF 390
                    D+     I   L   E   ++       +D     F+  K     T  AW 
Sbjct: 461 SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDF---RFLEQKIRHDST--AWN 515

Query: 391 KRLGVVEEVEHVLREY 406
               ++  +   L+ Y
Sbjct: 516 ASGSILNTL-QQLKFY 530

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	423
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.95
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.92
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.88
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.87
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.86
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.81
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.81
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.8
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.8
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.79
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.78
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.77
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.76
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.76
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.75
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.74
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.73
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.71
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.68
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.67
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.65
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.65
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.64
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.64
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.64
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.62
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.62
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.61
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.6
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.6
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.59
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.57
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.57
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.57
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.55
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.55
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.54
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.52
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.51
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.5
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.49
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.47
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.47
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.47
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.47
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.46
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.46
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.46
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.46
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.46
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.45
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.45
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.44
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.42
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.37
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.36
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.35
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.35
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.34
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.32
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.27
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.26
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.26
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.25
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.23
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.22
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.19
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.12
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.1
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.09
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.08
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.07
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.02
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.99
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.98
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.98
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.97
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.97
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.93
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.91
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.9
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.89
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.86
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.86
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.85
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.85
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.85
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.84
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.83
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.83
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.83
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.82
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.8
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.8
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.78
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.74
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.73
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.73
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.71
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.68
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.68
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.68
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.66
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.66
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.64
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.64
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.63
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.61
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.59
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.59
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.57
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.57
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.55
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.54
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.54
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.54
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.53
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.53
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.53
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.52
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.51
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.51
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.51
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.49
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.47
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.45
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.44
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.43
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.39
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.39
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.38
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.38
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.35
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.35
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.34
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.34
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.34
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.31
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.27
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.26
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.26
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.26
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.26
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.25
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.24
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.23
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.23
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.23
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.23
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.21
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.2
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.19
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.15
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.15
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.14
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.12
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.1
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.05
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.98
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.97
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.97
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.96
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.94
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.93
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.91
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.88
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.87
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.84
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.83
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.83
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.83
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.73
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.71
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.69
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.69
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.69
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.66
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.65
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.64
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.63
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.57
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.57
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.46
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.42
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.4
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.4
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.15
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.1
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.1
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.02
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.99
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.86
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.74
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.69
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.64
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.63
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.56
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.45
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.34
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.12
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.89
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.63
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.55
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.4
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.26
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.12
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.11
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	95.04
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	94.87
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	93.64
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	93.24
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.23
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	93.15
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.05
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.05
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	92.69
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.57
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	92.38
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.87
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	91.8
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	91.3
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.15
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.03
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	90.53
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	90.41
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.08
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	88.85
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.73
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	87.89
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	86.8
2p58_C	116	Putative type III secretion protein YSCG; type III	86.23
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	84.78
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	84.29
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	84.22
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	83.67
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	83.3
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	81.96
2p58_C	116	Putative type III secretion protein YSCG; type III	81.76
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	80.09

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=3e-34  Score=274.23  Aligned_cols=205  Identities=15%  Similarity=0.132  Sum_probs=182.1

Q ss_pred             HHHHHHHHhhcccCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HHH
Q 014507          154 LQVAELALLEESFEANI-RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN---------LKM  223 (423)
Q Consensus       154 a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------~~~  223 (423)
                      ++.+.+.+.+.+..+.+ ..++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+.         +++
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~   88 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR   88 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence            34555666666666554 45888999999999999999999999999999999999999999988765         688


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507          224 AEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       224 A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  303 (423)
                      |.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus        89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A           89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507          304 AGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKE  358 (423)
Q Consensus       304 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  358 (423)
                      .|+.||..||++||.+|++.|++++|.+++++|++.|..|+..||+.++..|+..
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999998763

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.2e-34  Score=275.20  Aligned_cols=207  Identities=20%  Similarity=0.241  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------h
Q 014507          187 QNAENTLLAMKRRGFICDQ-VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM---------L  256 (423)
Q Consensus       187 ~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~---------~  256 (423)
                      ..++.+.+++.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..||++||.+|++.+.         +
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l   86 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGL   86 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHH
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchH
Confidence            4566777788888776554 46889999999999999999999999999999999999999999988765         6


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          257 DRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       257 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  336 (423)
                      +.|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|++|
T Consensus        87 ~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M  166 (501)
T 4g26_A           87 SRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHM  166 (501)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 014507          337 RKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRL  393 (423)
Q Consensus       337 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~  393 (423)
                      .+.|+.||..||+.||.+|++.|++++|.+++++|.+.|..|+..||+.++..|...
T Consensus       167 ~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          167 VESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            999999999999999999999999999999999999999999999999999999764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=6.2e-31  Score=259.68  Aligned_cols=353  Identities=10%  Similarity=-0.105  Sum_probs=215.0

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhh--hhhhHHHHHHHHhccCCCCCHHH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKM--TKRCKAFVKQIICVSPETGNLSD  122 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m--~~~~~~~~~~ll~~~~~~g~~~~  122 (423)
                      .+.|++++|+..  |++|.  +..|+.  .++..++.+|.+ ++.+.|..+|+++  ..++..+|+.++.+|.+.|++++
T Consensus        95 ~~~g~~~~A~~~--~~~~~--~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  168 (597)
T 2xpi_A           95 LMQQQYKCAAFV--GEKVL--DITGNP--NDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQG  168 (597)
T ss_dssp             HHTTCHHHHHHH--HHHHH--HHHCCH--HHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHccCchHHHHH--HHHHH--hhCCCc--hHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHH
Confidence            678899999988  99888  456764  667777777775 4558888888887  45778888999999999999999


Q ss_pred             HHHHHHHhcCC-------------------ChhhHHHHHHHHHhcCCchHHHHHHHHHhhccc-----------------
Q 014507          123 LLAAWVRFMKP-------------------RRADWLAVLKQLKLMEHPLYLQVAELALLEESF-----------------  166 (423)
Q Consensus       123 a~~~~~~~~~p-------------------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----------------  166 (423)
                      |+++|+++...                   +..+|+.++.++.+.|+.++|...++.+.+.++                 
T Consensus       169 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~  248 (597)
T 2xpi_A          169 ALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTA  248 (597)
T ss_dssp             HHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCH
T ss_pred             HHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccc
Confidence            99999864322                   367888888899999998888888877754332                 


Q ss_pred             -----------------------------------------------------CCCHHHHHHHHHHHHccCCHHHHHHHH
Q 014507          167 -----------------------------------------------------EANIRDYTKIIHGYGKKMQIQNAENTL  193 (423)
Q Consensus       167 -----------------------------------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~  193 (423)
                                                                           +++..+|+.++.++.+.|++++|.++|
T Consensus       249 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  328 (597)
T 2xpi_A          249 DEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAIT  328 (597)
T ss_dssp             HHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHH
Confidence                                                                 267777888888888888888888888


Q ss_pred             HHHHHcCCC---------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 014507          194 LAMKRRGFI---------------------------------CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK  240 (423)
Q Consensus       194 ~~m~~~g~~---------------------------------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~  240 (423)
                      +++.+.+..                                 .+..+|+.++..|.+.|++++|.++|+++.+.. +.+.
T Consensus       329 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~  407 (597)
T 2xpi_A          329 TKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFG  407 (597)
T ss_dssp             HHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCH
Confidence            887765422                                 133444444455555555555555555444432 2234


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507          241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAY  320 (423)
Q Consensus       241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  320 (423)
                      .+|+.++.+|.+.|++++|.++|+++.+.+.. +..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|
T Consensus       408 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  485 (597)
T 2xpi_A          408 PAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVA  485 (597)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence            44555555555555555555555555443321 44455555555555555555555555554432 22445555555555


Q ss_pred             HHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC
Q 014507          321 QMAGQSQKAYTAFQNMRKA----GLEPS--DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLG  394 (423)
Q Consensus       321 ~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g  394 (423)
                      .+.|++++|.++|+++.+.    +..|+  ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..+..+|.+.|
T Consensus       486 ~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g  564 (597)
T 2xpi_A          486 FNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKK  564 (597)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhC
Confidence            5555555555555555442    33444  4455555555555555555555555554432 234455555555555555


Q ss_pred             CHHHHHHHHHHhcc
Q 014507          395 VVEEVEHVLREYGL  408 (423)
Q Consensus       395 ~~~~A~~~~~~m~~  408 (423)
                      ++++|.++|+++.+
T Consensus       565 ~~~~A~~~~~~~l~  578 (597)
T 2xpi_A          565 IPGLAITHLHESLA  578 (597)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHh
Confidence            55555555555443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.8e-30  Score=256.33  Aligned_cols=335  Identities=11%  Similarity=-0.020  Sum_probs=283.1

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcce-------------------------------------eeeeeccccch-H
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMF-------------------------------------TWIQIGPNITE-E   87 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~-------------------------------------~~~~l~~~~~~-~   87 (423)
                      ...|++++|+..  |++|.+.  .|+....                                     +|+.++..|.+ +
T Consensus       211 ~~~g~~~~A~~~--~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g  286 (597)
T 2xpi_A          211 TNLSNFDRAKEC--YKEALMV--DAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHED  286 (597)
T ss_dssp             HHTTCHHHHHHH--HHHHHHH--CTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHH
T ss_pred             HHcCCHHHHHHH--HHHHHHh--CchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcc
Confidence            677888888888  8888764  3432110                                     13344666664 4


Q ss_pred             HHHHHhcCChhhhh--hhHHHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 014507           88 QKQAISQFPRKMTK--RCKAFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKLMEHPLYLQVAELALL  162 (423)
Q Consensus        88 ~~~~a~~~~~~m~~--~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  162 (423)
                      +.+.|..+|+++.+  ++..+|+.++..|.+.|++++|+++|+++.  .| +..++..++.++.+.|+.++|..++..+.
T Consensus       287 ~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  366 (597)
T 2xpi_A          287 ELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLV  366 (597)
T ss_dssp             HHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            45888888888876  788889999999999999999999998873  33 56788899999999999999999988887


Q ss_pred             hcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 014507          163 EESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRS  242 (423)
Q Consensus       163 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~  242 (423)
                      +.. +.+..+|+.++..|.+.|++++|.++|+++.+.... +..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+
T Consensus       367 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~  443 (597)
T 2xpi_A          367 DRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLP  443 (597)
T ss_dssp             HHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHH
T ss_pred             hhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHH
Confidence            543 567899999999999999999999999999886433 78899999999999999999999999999875 458899


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCCC--HHHHHHH
Q 014507          243 YGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA----GITPD--ARMCALL  316 (423)
Q Consensus       243 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~l  316 (423)
                      |+.++.+|.+.|++++|.++|+++.+.... +..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..+
T Consensus       444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l  522 (597)
T 2xpi_A          444 YLFLGMQHMQLGNILLANEYLQSSYALFQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL  522 (597)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence            999999999999999999999999986543 7899999999999999999999999999875    66787  8899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH
Q 014507          317 INAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWF  390 (423)
Q Consensus       317 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~  390 (423)
                      +.+|.+.|++++|.+.|+++.+.+ +.+..+|..+...|.+.|++++|.+.++++.+.. +.+...+..+..+|
T Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          523 GHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL  594 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence            999999999999999999998864 3478999999999999999999999999999852 33566676666554

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.95  E-value=2.3e-24  Score=201.18  Aligned_cols=355  Identities=12%  Similarity=0.036  Sum_probs=299.6

Q ss_pred             hhhhhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccc-hHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCC
Q 014507           43 AKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNIT-EEQKQAISQFPRKMTK---RCKAFVKQIICVSPETG  118 (423)
Q Consensus        43 ~~~~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~-~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g  118 (423)
                      ..+...|++++|+..  +.++.+  ..|+. ...+..+...+. .++.+.+..+++...+   .+..+|..+...+.+.|
T Consensus         7 ~~~~~~g~~~~A~~~--~~~~~~--~~p~~-~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g   81 (388)
T 1w3b_A            7 HREYQAGDFEAAERH--CMQLWR--QEPDN-TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHTCHHHHHHH--HHHHHH--HCTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHH--HHHHHH--hCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCC
Confidence            344788999999988  777655  45664 233333444444 3455777777776654   45678999999999999


Q ss_pred             CHHHHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 014507          119 NLSDLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLA  195 (423)
Q Consensus       119 ~~~~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  195 (423)
                      ++++|++.|+++  ..|+. .+|..+..++...|+.++|...+..+++.. +.+...+..+...+...|++++|.+.|++
T Consensus        82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  160 (388)
T 1w3b_A           82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence            999999999998  45654 579999999999999999999999888764 33556778888999999999999999999


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 014507          196 MKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGS  275 (423)
Q Consensus       196 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  275 (423)
                      +.+.... +..+|..+...+.+.|++++|...|+++.+.+ +.+...|..+...+...|++++|...+++..+.... +.
T Consensus       161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~  237 (388)
T 1w3b_A          161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA  237 (388)
T ss_dssp             HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred             HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CH
Confidence            9987433 68899999999999999999999999999875 446788999999999999999999999999886543 67


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507          276 EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC  355 (423)
Q Consensus       276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  355 (423)
                      .++..+...+.+.|++++|.+.|+++.+.+ +.+..+|..+..++.+.|++++|.+.|+++.+.. +.+..++..+...+
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  315 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHH
Confidence            899999999999999999999999999863 3367889999999999999999999999998853 45788999999999


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          356 EKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       356 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      ...|++++|...++++.+. .+.+..++..+...|.+.|++++|.+.|+++.+.
T Consensus       316 ~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  368 (388)
T 1w3b_A          316 REQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI  368 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            9999999999999999875 3456889999999999999999999999998763

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.92  E-value=7.6e-22  Score=184.10  Aligned_cols=317  Identities=9%  Similarity=-0.040  Sum_probs=273.4

Q ss_pred             hHHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--c-CCChhhHHHHHHHHHhcCCchHHHHHHH
Q 014507           86 EEQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--M-KPRRADWLAVLKQLKLMEHPLYLQVAEL  159 (423)
Q Consensus        86 ~~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~  159 (423)
                      .++.+.|...++.+.+   .+...+..+...+.+.|++++|...++..  . ..+..+|..+..++.+.|++++|...++
T Consensus        12 ~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   91 (388)
T 1w3b_A           12 AGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYR   91 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            4556778877777654   34456777777888999999999999886  2 3456789999999999999999999999


Q ss_pred             HHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 014507          160 ALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD  239 (423)
Q Consensus       160 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~  239 (423)
                      .+.+.. +.+...|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|.+.|+++.+.. +.+
T Consensus        92 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~  168 (388)
T 1w3b_A           92 HALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNF  168 (388)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCC
Confidence            888764 345678999999999999999999999999987533 56678888999999999999999999999874 446


Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014507          240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINA  319 (423)
Q Consensus       240 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  319 (423)
                      ..+|..+...+.+.|++++|...|+++.+.+.. +...+..+...+...|++++|...+++..... +.+..++..+..+
T Consensus       169 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~  246 (388)
T 1w3b_A          169 AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACV  246 (388)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHHHHHHHH
Confidence            789999999999999999999999999987544 67889999999999999999999999988753 2368899999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 014507          320 YQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEV  399 (423)
Q Consensus       320 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A  399 (423)
                      |...|++++|.+.|+++.+.+ +.+..+|..+...+.+.|++++|.+.++++.+. .+.+..++..+...+.+.|++++|
T Consensus       247 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A  324 (388)
T 1w3b_A          247 YYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEA  324 (388)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999999853 235778999999999999999999999999886 356789999999999999999999


Q ss_pred             HHHHHHhccc
Q 014507          400 EHVLREYGLR  409 (423)
Q Consensus       400 ~~~~~~m~~~  409 (423)
                      .+.++++.+.
T Consensus       325 ~~~~~~al~~  334 (388)
T 1w3b_A          325 VRLYRKALEV  334 (388)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHHhc
Confidence            9999998764

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=8.7e-21  Score=180.30  Aligned_cols=300  Identities=11%  Similarity=0.021  Sum_probs=255.2

Q ss_pred             hhHHHHHHHHhccCCCCCHHHHHHHHHHhc--C-CChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHH
Q 014507          102 RCKAFVKQIICVSPETGNLSDLLAAWVRFM--K-PRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIH  178 (423)
Q Consensus       102 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  178 (423)
                      .+...|..+...+.+.|++++|++.|++++  . .+..++..+..++...|+.+.|...+..+++.+ +.+...+..+..
T Consensus        24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  102 (450)
T 2y4t_A           24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGH  102 (450)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHH
Confidence            456788889999999999999999999973  3 456889999999999999999999999988875 456888999999


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014507          179 GYGKKMQIQNAENTLLAMKRRGFICDQ---VTLTVM------------VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY  243 (423)
Q Consensus       179 ~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~  243 (423)
                      ++.+.|++++|.+.|+++.+.... +.   ..+..+            ...+.+.|++++|...|+++.+.. +.+..++
T Consensus       103 ~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  180 (450)
T 2y4t_A          103 LLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELR  180 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence            999999999999999999887432 33   555555            444889999999999999999865 4578899


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------
Q 014507          244 GSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALL-------  316 (423)
Q Consensus       244 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l-------  316 (423)
                      ..+..+|.+.|++++|...|+++.+.... +..++..+...|...|++++|...|+++.... +.+...+..+       
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~  258 (450)
T 2y4t_A          181 ELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLN  258 (450)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHH
Confidence            99999999999999999999999876433 68899999999999999999999999998652 2245555554       


Q ss_pred             -----HHHHHHcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHH
Q 014507          317 -----INAYQMAGQSQKAYTAFQNMRKAGLEPS-----DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTL  386 (423)
Q Consensus       317 -----i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l  386 (423)
                           ...+...|++++|.+.|+++.+.  .|+     ...+..+...+.+.|++++|...++++.+.. +.+...+..+
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l  335 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence                 78899999999999999999873  454     4578888999999999999999999988752 3468899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHhccc
Q 014507          387 AAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       387 ~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      ..+|.+.|++++|.+.|++..+.
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~~  358 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQEH  358 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHh
Confidence            99999999999999999998663

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.88  E-value=8.4e-20  Score=173.50  Aligned_cols=323  Identities=11%  Similarity=0.026  Sum_probs=241.8

Q ss_pred             eeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHh
Q 014507           75 FTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKL  147 (423)
Q Consensus        75 ~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~  147 (423)
                      ..|..+...+.+ ++.+.|..+|+++.+   .+..+|..+..++...|++++|++.|++++  .| +..++..+...+..
T Consensus        27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  106 (450)
T 2y4t_A           27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK  106 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            344444444443 444666666666644   356678888888888899999999988873  34 35678888888888


Q ss_pred             cCCchHHHHHHHHHhhcccCCCH---HHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014507          148 MEHPLYLQVAELALLEESFEANI---RDYTKI------------IHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMV  212 (423)
Q Consensus       148 ~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li  212 (423)
                      .|+++.|...+..+.+... .+.   ..+..+            ...+.+.|++++|...|+++.+... .+...+..+.
T Consensus       107 ~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~  184 (450)
T 2y4t_A          107 QGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAELRELRA  184 (450)
T ss_dssp             TTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHH
Confidence            9999999888888876542 233   455544            3448888999999999999887643 3778888999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH-----------
Q 014507          213 VMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKAL-----------  281 (423)
Q Consensus       213 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-----------  281 (423)
                      ..|.+.|++++|...|+++.+.. +.+..++..+...|...|++++|...|+++.+.... +...+..+           
T Consensus       185 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~  262 (450)
T 2y4t_A          185 ECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIE  262 (450)
T ss_dssp             HHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999988764 457888999999999999999999999998875432 44445444           


Q ss_pred             -HHHHHhCCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507          282 -LRGYSMNGNSEGAQRVFEAIQFAGITPD-----ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC  355 (423)
Q Consensus       282 -i~~~~~~g~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  355 (423)
                       ...+.+.|++++|...|+.+.+.  .|+     ...|..+..++.+.|++++|.+.++++.+.. +.+...+..+..+|
T Consensus       263 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~  339 (450)
T 2y4t_A          263 SAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAY  339 (450)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence             78888999999999999998874  454     4578888899999999999999999987742 33578889999999


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCc-CHHHHHHHHHH------------HHHcC-----CHHHHHHHHHHh
Q 014507          356 EKENQLNRALEFLIDLERDGFMV-GKEASCTLAAW------------FKRLG-----VVEEVEHVLREY  406 (423)
Q Consensus       356 ~~~g~~~~a~~~~~~m~~~g~~~-~~~~~~~l~~~------------~~~~g-----~~~~A~~~~~~m  406 (423)
                      ...|++++|...++++.+.  .| +...+..+..+            |...|     +.+++.+.++++
T Consensus       340 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~  406 (450)
T 2y4t_A          340 LIEEMYDEAIQDYETAQEH--NENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKL  406 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHH
Confidence            9999999999999998874  34 45556655532            33334     455667766653

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.87  E-value=1.4e-20  Score=181.89  Aligned_cols=353  Identities=8%  Similarity=-0.070  Sum_probs=287.8

Q ss_pred             hhhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCH
Q 014507           45 WSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNL  120 (423)
Q Consensus        45 ~~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~  120 (423)
                      +...|++++|+..  |+++.+..  |+.  ..|..+..++.+ ++.+.|...++++.+   .+..+|..+..++.+.|++
T Consensus        16 ~~~~g~~~~A~~~--~~~al~~~--p~~--~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~   89 (514)
T 2gw1_A           16 FFRNKKYDDAIKY--YNWALELK--EDP--VFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF   89 (514)
T ss_dssp             HHHTSCHHHHHHH--HHHHHHHC--CCH--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhccHHHHHHH--HHHHHhcC--ccH--HHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence            3788999999999  99988765  654  677777777774 556888888888765   3567899999999999999


Q ss_pred             HHHHHHHHHhc--CC-C---------------------------------------------------------------
Q 014507          121 SDLLAAWVRFM--KP-R---------------------------------------------------------------  134 (423)
Q Consensus       121 ~~a~~~~~~~~--~p-~---------------------------------------------------------------  134 (423)
                      ++|+..|+++.  .| +                                                               
T Consensus        90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
T 2gw1_A           90 ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG  169 (514)
T ss_dssp             HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence            99999998872  22 1                                                               


Q ss_pred             ----------------hhhHHHHHHHHHh---cCCchHHHHHHHHHhh-----ccc--------CCCHHHHHHHHHHHHc
Q 014507          135 ----------------RADWLAVLKQLKL---MEHPLYLQVAELALLE-----ESF--------EANIRDYTKIIHGYGK  182 (423)
Q Consensus       135 ----------------~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~li~~~~~  182 (423)
                                      ...+......+..   .|+++.|...+..+.+     ..-        +.+...+..+...+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (514)
T 2gw1_A          170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL  249 (514)
T ss_dssp             TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence                            1112222222222   7889999998888877     211        2345678889999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014507          183 KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVL  262 (423)
Q Consensus       183 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~  262 (423)
                      .|++++|...++++.+....  ...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...
T Consensus       250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~  326 (514)
T 2gw1_A          250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQAGKD  326 (514)
T ss_dssp             SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            99999999999999987544  8889999999999999999999999998865 44678899999999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-
Q 014507          263 LREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGL-  341 (423)
Q Consensus       263 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-  341 (423)
                      +++..+.... +...+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|.+.++++.+... 
T Consensus       327 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  404 (514)
T 2gw1_A          327 FDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK  404 (514)
T ss_dssp             HHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            9999987554 66789999999999999999999999988753 33678899999999999999999999999876321 


Q ss_pred             CCC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          342 EPS----DKCVALILSACEK---ENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       342 ~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      .++    ...+..+...+..   .|++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+.
T Consensus       405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  478 (514)
T 2gw1_A          405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESADL  478 (514)
T ss_dssp             SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            122    3488899999999   999999999999998753 346788899999999999999999999987654

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.86  E-value=7e-18  Score=154.74  Aligned_cols=300  Identities=11%  Similarity=0.006  Sum_probs=248.7

Q ss_pred             hHHHHHHHHhccCCCCCHHHHHHHHHHh--cCC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHH
Q 014507          103 CKAFVKQIICVSPETGNLSDLLAAWVRF--MKP-RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHG  179 (423)
Q Consensus       103 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  179 (423)
                      |+..|..+...+...|++++|++.|++.  ..| +..++..+...+...|+++.|...+....+.. +.+...+..+...
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~   80 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL   80 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence            4556777788888999999999999997  334 45788888899999999999999999888764 3467889999999


Q ss_pred             HHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507          180 YGKKMQIQNAENTLLAMKRRGFI--CDQVTLTVM------------VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS  245 (423)
Q Consensus       180 ~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~  245 (423)
                      +...|++++|...+++..+....  .+...+..+            ...+...|++++|...++++.+.. +.+...+..
T Consensus        81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~  159 (359)
T 3ieg_A           81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL  159 (359)
T ss_dssp             HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence            99999999999999999887430  144445444            578889999999999999998875 457889999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH-----------
Q 014507          246 MVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA-----------  314 (423)
Q Consensus       246 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~-----------  314 (423)
                      +...+...|++++|...++++.+.... +..++..+...+...|++++|...++...+.. +.+...+.           
T Consensus       160 ~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~  237 (359)
T 3ieg_A          160 RAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKL  237 (359)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999987543 78899999999999999999999999988753 22444333           


Q ss_pred             -HHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507          315 -LLINAYQMAGQSQKAYTAFQNMRKAGLEPS-D----KCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAA  388 (423)
Q Consensus       315 -~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~  388 (423)
                       .+...+.+.|++++|.+.+++..+..  |+ .    ..+..+...+...|++++|...+++..+. .+.+..++..+..
T Consensus       238 ~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~  314 (359)
T 3ieg_A          238 IESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAE  314 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHH
Confidence             23667899999999999999998743  43 2    23556778899999999999999999885 2447889999999


Q ss_pred             HHHHcCCHHHHHHHHHHhccc
Q 014507          389 WFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       389 ~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      .|.+.|++++|.+.|++..+.
T Consensus       315 ~~~~~g~~~~A~~~~~~a~~~  335 (359)
T 3ieg_A          315 AYLIEEMYDEAIQDYEAAQEH  335 (359)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHhc
Confidence            999999999999999998764

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.83  E-value=4.6e-18  Score=164.11  Aligned_cols=301  Identities=8%  Similarity=-0.075  Sum_probs=248.7

Q ss_pred             hHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHH
Q 014507          103 CKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGY  180 (423)
Q Consensus       103 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~  180 (423)
                      ....|......+.+.|++++|++.|+++  ..|+..+|..+..++...|+++.|...+..+++.. +.+...|..+..++
T Consensus         5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~   83 (514)
T 2gw1_A            5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence            3455666777788899999999999998  46898999999999999999999999999888765 45678899999999


Q ss_pred             HccCCHHHHHHHHHHHHHcCCCC---------------------------------------------------------
Q 014507          181 GKKMQIQNAENTLLAMKRRGFIC---------------------------------------------------------  203 (423)
Q Consensus       181 ~~~~~~~~a~~~~~~m~~~g~~p---------------------------------------------------------  203 (423)
                      .+.|++++|...|+++.+.+...                                                         
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS  163 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence            99999999999999887764210                                                         


Q ss_pred             ---------------------CHHHHHHHHHHHHH---cCCHHHHHHHHHHHHH-----cCC--------CCCHHHHHHH
Q 014507          204 ---------------------DQVTLTVMVVMYSK---AGNLKMAEETFEEIKL-----LGE--------PLDKRSYGSM  246 (423)
Q Consensus       204 ---------------------~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~g~--------~~~~~~~~~l  246 (423)
                                           +...+......+..   .|++++|..+|+++.+     ...        +.+..++..+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (514)
T 2gw1_A          164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT  243 (514)
T ss_dssp             HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence                                 12333333333343   7999999999999988     311        2235678889


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507          247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS  326 (423)
Q Consensus       247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  326 (423)
                      ...+...|++++|...++++.+.+..  ...+..+...+...|++++|...++.+.... +.+...|..+...+...|++
T Consensus       244 ~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  320 (514)
T 2gw1_A          244 GIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNY  320 (514)
T ss_dssp             HHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCH
Confidence            99999999999999999999886544  8889999999999999999999999998753 34678899999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          327 QKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       327 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      ++|...+++..+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+.++++
T Consensus       321 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  398 (514)
T 2gw1_A          321 DQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLA  398 (514)
T ss_dssp             THHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            99999999998854 235678889999999999999999999999875 2346788999999999999999999999987


Q ss_pred             ccc
Q 014507          407 GLR  409 (423)
Q Consensus       407 ~~~  409 (423)
                      .+.
T Consensus       399 ~~~  401 (514)
T 2gw1_A          399 IEL  401 (514)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            653

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=2e-20  Score=184.44  Aligned_cols=114  Identities=18%  Similarity=0.224  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507          242 SYGSMVMAYVRAGMLDRGEVLLREMDA---QEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLIN  318 (423)
Q Consensus       242 ~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~  318 (423)
                      ||++||++|++.|++++|.++|++|.+   .|+.||..|||+||++||+.|++++|.++|++|.+.|+.||..|||++|.
T Consensus       129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntLI~  208 (1134)
T 3spa_A          129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence            444444444444444444444444332   24444555555555555555555555555555555555555555555555


Q ss_pred             HHHHcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507          319 AYQMAGQ-SQKAYTAFQNMRKAGLEPSDKCVALILSAC  355 (423)
Q Consensus       319 ~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  355 (423)
                      ++++.|+ .++|.++|++|.+.|+.||..||++++.++
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~  246 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEE  246 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHH
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChh
Confidence            5555444 234445555555555555555555444433

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.82  E-value=3.3e-17  Score=148.60  Aligned_cols=287  Identities=9%  Similarity=-0.088  Sum_probs=230.4

Q ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Q 014507          105 AFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYG  181 (423)
Q Consensus       105 ~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  181 (423)
                      ..+..+...+...|++++|++.|++..  .| +...+..+...+...|+.+.|...+..+.+.. +.+...|..+...+.
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  101 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYL  101 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHH
Confidence            445556666677799999999999873  33 33566677888889999999999988887754 346778888899999


Q ss_pred             ccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 014507          182 KKM-QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGE  260 (423)
Q Consensus       182 ~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~  260 (423)
                      ..| ++++|...|++..+.... +...|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|.
T Consensus       102 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  179 (330)
T 3hym_B          102 MVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAE  179 (330)
T ss_dssp             HSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHH
Confidence            999 999999999999887533 57788899999999999999999999998865 335667777999999999999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507          261 VLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG--------ITPDARMCALLINAYQMAGQSQKAYTA  332 (423)
Q Consensus       261 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~a~~~  332 (423)
                      ..+++..+.... +...+..+...+...|++++|...+++..+..        ...+...|..+..++...|++++|.+.
T Consensus       180 ~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  258 (330)
T 3hym_B          180 RFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDY  258 (330)
T ss_dssp             HHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            999999887543 67889999999999999999999999887531        123467888999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHH-HHcCCHH
Q 014507          333 FQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWF-KRLGVVE  397 (423)
Q Consensus       333 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~-~~~g~~~  397 (423)
                      +++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..++ ...|+.+
T Consensus       259 ~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          259 HRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            99988743 2356788889999999999999999999887752 34677788888877 4555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=9.9e-18  Score=154.69  Aligned_cols=286  Identities=11%  Similarity=0.013  Sum_probs=229.0

Q ss_pred             cCCCCCHHHHHH-HHHHhc--CC-----ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCC
Q 014507          114 SPETGNLSDLLA-AWVRFM--KP-----RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQ  185 (423)
Q Consensus       114 ~~~~g~~~~a~~-~~~~~~--~p-----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~  185 (423)
                      +...|++++|++ .|++..  .|     +...+..+...+...|+++.|...+..+++.. +.+...+..+..++...|+
T Consensus        35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence            445588999998 888752  22     34668889999999999999999999988765 4578899999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHH
Q 014507          186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS---------------MVMAY  250 (423)
Q Consensus       186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~---------------li~~~  250 (423)
                      +++|...|+++.+.... +..++..+...|...|++++|.+.|+++.+... .+...+..               .+..+
T Consensus       114 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (368)
T 1fch_A          114 ELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAGLGPSKRILGSL  191 (368)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTST-TTGGGCC---------------CTTHHH
T ss_pred             HHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence            99999999999987543 788999999999999999999999999998642 22222221               23444


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507          251 VRAGMLDRGEVLLREMDAQEVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKA  329 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  329 (423)
                      ...|++++|...++++.+..... +..++..+...|.+.|++++|...++++.... +.+...|..+..++...|++++|
T Consensus       192 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A  270 (368)
T 1fch_A          192 LSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEA  270 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             hhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHH
Confidence            48899999999999998864332 58899999999999999999999999988753 34688999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC----------cCHHHHHHHHHHHHHcCCHHHH
Q 014507          330 YTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFM----------VGKEASCTLAAWFKRLGVVEEV  399 (423)
Q Consensus       330 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~----------~~~~~~~~l~~~~~~~g~~~~A  399 (423)
                      .+.|+++.+.. +.+...+..+...+.+.|++++|...++++.+....          ....+|..+..+|.+.|++++|
T Consensus       271 ~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  349 (368)
T 1fch_A          271 VAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  349 (368)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhH
Confidence            99999998743 345788999999999999999999999998764211          1268899999999999999999


Q ss_pred             HHHHH
Q 014507          400 EHVLR  404 (423)
Q Consensus       400 ~~~~~  404 (423)
                      ..+++
T Consensus       350 ~~~~~  354 (368)
T 1fch_A          350 GAADA  354 (368)
T ss_dssp             HHHHT
T ss_pred             HHhHH
Confidence            99876

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.81  E-value=6.6e-18  Score=164.09  Aligned_cols=352  Identities=9%  Similarity=0.011  Sum_probs=272.3

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLS  121 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~  121 (423)
                      ...|++++|+..  |++..+.  .|+. ...|..+..++.+ ++.+.|...|+++.+   .+...|..+...+...|+++
T Consensus        36 ~~~g~~~~A~~~--~~~al~~--~p~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~  110 (537)
T 3fp2_A           36 FTAKNFNEAIKY--YQYAIEL--DPNE-PVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFT  110 (537)
T ss_dssp             HHTTCCC-CHHH--HHHHHHH--CTTC-HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHhccHHHHHHH--HHHHHhh--CCCC-cHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHH
Confidence            789999999999  9988764  4553 3566677777764 556888888888765   45678888999999999999


Q ss_pred             HHHHHHHHh-cCCChhh---------------------------------------------------------------
Q 014507          122 DLLAAWVRF-MKPRRAD---------------------------------------------------------------  137 (423)
Q Consensus       122 ~a~~~~~~~-~~p~~~~---------------------------------------------------------------  137 (423)
                      +|++.|+.. ..|+...                                                               
T Consensus       111 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (537)
T 3fp2_A          111 DAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD  190 (537)
T ss_dssp             HHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSC
T ss_pred             HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccc
Confidence            999999643 2232111                                                               


Q ss_pred             --HHHHHHHHHh------------cCCchHHHHHHHHHhhcccCCC-------HHHHHHHHHHHHccCCHHHHHHHHHHH
Q 014507          138 --WLAVLKQLKL------------MEHPLYLQVAELALLEESFEAN-------IRDYTKIIHGYGKKMQIQNAENTLLAM  196 (423)
Q Consensus       138 --~~~ll~~~~~------------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m  196 (423)
                        +..+..++..            .++++.|...+..+++.... +       ..++..+...+...|++++|...+++.
T Consensus       191 ~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~  269 (537)
T 3fp2_A          191 TAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTGIFHFLKNNLLDAQVLLQES  269 (537)
T ss_dssp             SSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence              0001111111            13566777777777665422 2       235677778888999999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 014507          197 KRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSE  276 (423)
Q Consensus       197 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  276 (423)
                      .+..  |+...|..+...+...|++++|...|++..+.. +.+..+|..+...+...|++++|...+++..+.... +..
T Consensus       270 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~  345 (537)
T 3fp2_A          270 INLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVY  345 (537)
T ss_dssp             HHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSH
T ss_pred             HhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHH
Confidence            9874  457889999999999999999999999998875 457889999999999999999999999999886543 567


Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG-----LEPSDKCVALI  351 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~l  351 (423)
                      .+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.|+++.+..     .......+...
T Consensus       346 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~  424 (537)
T 3fp2_A          346 PYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGK  424 (537)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHH
Confidence            89999999999999999999999998763 3467789999999999999999999999987631     11222334555


Q ss_pred             HHHHHHc----------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          352 LSACEKE----------NQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       352 i~~~~~~----------g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      ...+...          |++++|...++++.+.. +.+...+..+...|.+.|++++|.+.|++..+.
T Consensus       425 a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  491 (537)
T 3fp2_A          425 ATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAIL  491 (537)
T ss_dssp             HHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            6677777          99999999999998863 356788999999999999999999999987653

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.81  E-value=8.7e-17  Score=145.78  Aligned_cols=273  Identities=9%  Similarity=-0.055  Sum_probs=233.4

Q ss_pred             cCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507          131 MKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTV  210 (423)
Q Consensus       131 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  210 (423)
                      ...+...+..+...+...|+++.|..++..+.+.. +.+...+..++..+...|++++|...++++.+.... +...|..
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~   95 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFA   95 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHH
Confidence            34566778888888999999999999999888765 345667777888999999999999999999987433 6788999


Q ss_pred             HHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 014507          211 MVVMYSKAG-NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG  289 (423)
Q Consensus       211 li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  289 (423)
                      +...+...| ++++|...|++..+.. +.+...|..+...+...|++++|...++++.+.... +...+..+...|...|
T Consensus        96 l~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~  173 (330)
T 3hym_B           96 VGCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTN  173 (330)
T ss_dssp             HHHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHh
Confidence            999999999 9999999999999865 446788999999999999999999999999886543 4567777999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHHcCCH
Q 014507          290 NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG--------LEPSDKCVALILSACEKENQL  361 (423)
Q Consensus       290 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--------~~p~~~~~~~li~~~~~~g~~  361 (423)
                      ++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+..        ...+..++..+...+...|++
T Consensus       174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~  252 (330)
T 3hym_B          174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY  252 (330)
T ss_dssp             CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred             hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence            9999999999998764 4478899999999999999999999999987631        123457899999999999999


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          362 NRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       362 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      ++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++..+.
T Consensus       253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  299 (330)
T 3hym_B          253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL  299 (330)
T ss_dssp             HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred             HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence            99999999998863 346788999999999999999999999987653

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.80  E-value=5.9e-18  Score=156.27  Aligned_cols=266  Identities=11%  Similarity=-0.022  Sum_probs=217.9

Q ss_pred             ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507          134 RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVV  213 (423)
Q Consensus       134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  213 (423)
                      +...+..+...+.+.|+++.|...++.+++.. +.+...|..+...+...|++++|...|++..+.... +..+|..+..
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~  141 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAV  141 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHH
Confidence            44568888889999999999999999888765 457889999999999999999999999999887433 6889999999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCHHHHHHH
Q 014507          214 MYSKAGNLKMAEETFEEIKLLGEPLD-----------KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VGSEVYKAL  281 (423)
Q Consensus       214 ~~~~~g~~~~A~~~~~~m~~~g~~~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~l  281 (423)
                      .|...|++++|...|+++.+..  |+           ...+..+...+...|++++|...++++.+.... ++..++..+
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l  219 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGL  219 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHH
Confidence            9999999999999999998753  22           233445688899999999999999999886433 268899999


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507          282 LRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQL  361 (423)
Q Consensus       282 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  361 (423)
                      ...|.+.|++++|.+.+++..+.. +.+..+|+.+..+|...|++++|.+.|++..+.. +.+..++..+...|...|++
T Consensus       220 ~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          220 GVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAY  297 (365)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCH
Confidence            999999999999999999988763 4478899999999999999999999999998843 23488899999999999999


Q ss_pred             HHHHHHHHHHHHCC---CC--------cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          362 NRALEFLIDLERDG---FM--------VGKEASCTLAAWFKRLGVVEEVEHVLRE  405 (423)
Q Consensus       362 ~~a~~~~~~m~~~g---~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~  405 (423)
                      ++|...++++.+..   ..        .+...+..+..++...|+.+.+.++.++
T Consensus       298 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          298 REAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999999987641   11        1367899999999999999999988765

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.80  E-value=7.8e-20  Score=180.26  Aligned_cols=129  Identities=12%  Similarity=0.096  Sum_probs=117.2

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014507          274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQF---AGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVAL  350 (423)
Q Consensus       274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  350 (423)
                      -..||++||++||+.|++++|.++|++|.+   .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            346999999999999999999999988764   58999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCH-HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          351 ILSACEKENQL-NRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       351 li~~~~~~g~~-~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      +|.++++.|+. ++|.++|++|.+.|+.||..+|++++....+.    .+++.++++
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv  258 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV  258 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh
Confidence            99999999984 78999999999999999999999999887775    444444444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.79  E-value=6.9e-16  Score=141.36  Aligned_cols=297  Identities=10%  Similarity=-0.013  Sum_probs=231.3

Q ss_pred             HHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCC-ChhhHHHHHHHHHhcCCchHHHHHHHHHh
Q 014507           89 KQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKP-RRADWLAVLKQLKLMEHPLYLQVAELALL  162 (423)
Q Consensus        89 ~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  162 (423)
                      .+.|...|+++.+   .+..+|..+...+...|++++|++.|++.  ..| +...+..+...+...|+.+.|...+....
T Consensus        19 ~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~   98 (359)
T 3ieg_A           19 LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVL   98 (359)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            3445555544432   23456777777888889999999999887  344 44778888888888999999988888877


Q ss_pred             hcccC--CCHHHHHHH------------HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          163 EESFE--ANIRDYTKI------------IHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETF  228 (423)
Q Consensus       163 ~~~~~--~~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  228 (423)
                      +....  .+...+..+            ...+...|++++|.+.++++.+... .+...+..+...+...|++++|...+
T Consensus        99 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~  177 (359)
T 3ieg_A           99 KSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDL  177 (359)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence            65421  234444444            5788899999999999999988744 37889999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH------------HHHHHHHhCCCHHHHHH
Q 014507          229 EEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYK------------ALLRGYSMNGNSEGAQR  296 (423)
Q Consensus       229 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~------------~li~~~~~~g~~~~a~~  296 (423)
                      ++..+.. +.+..++..+...+...|++++|...+++..+.... +...+.            .+...+.+.|++++|..
T Consensus       178 ~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~  255 (359)
T 3ieg_A          178 KAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATS  255 (359)
T ss_dssp             HHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999875 557889999999999999999999999999876433 333333            33667999999999999


Q ss_pred             HHHHHHHCCCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          297 VFEAIQFAGITPD-A----RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDL  371 (423)
Q Consensus       297 ~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  371 (423)
                      .++.+.+..  |+ .    ..+..+..++...|++++|.+.+++..+.. +.+..++..+...+...|++++|...++++
T Consensus       256 ~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a  332 (359)
T 3ieg_A          256 KYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAA  332 (359)
T ss_dssp             HHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999988753  33 3    235567789999999999999999998853 336889999999999999999999999999


Q ss_pred             HHCCCCcCHHHHHHHHHHHHH
Q 014507          372 ERDGFMVGKEASCTLAAWFKR  392 (423)
Q Consensus       372 ~~~g~~~~~~~~~~l~~~~~~  392 (423)
                      .+.. +-+......+..+...
T Consensus       333 ~~~~-p~~~~~~~~l~~~~~~  352 (359)
T 3ieg_A          333 QEHN-ENDQQIREGLEKAQRL  352 (359)
T ss_dssp             HTTC-TTCHHHHHHHHHHHHH
T ss_pred             HhcC-CCChHHHHHHHHHHHH
Confidence            9853 2345666666655543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.78  E-value=1.5e-16  Score=144.01  Aligned_cols=265  Identities=10%  Similarity=-0.024  Sum_probs=209.8

Q ss_pred             hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507          136 ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMY  215 (423)
Q Consensus       136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  215 (423)
                      ..+......+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+... .+..++..+...+
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~   99 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSH   99 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-CCHHHHHHHHHHH
Confidence            345556666677777777777777766654 34677788888888999999999999998888743 3678888888999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHH
Q 014507          216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSM--------------VM-AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKA  280 (423)
Q Consensus       216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  280 (423)
                      ...|++++|.+.+++..+.. +.+...+..+              .. .+...|++++|...++++.+.... +...+..
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~  177 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHAS  177 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHH
Confidence            99999999999999988753 2222233322              22 367788999999999999886543 7889999


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507          281 LLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQ  360 (423)
Q Consensus       281 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  360 (423)
                      +...+.+.|++++|.+.++++.+.. +.+...|..+...+...|++++|.+.+++..+.. +.+...+..+...+...|+
T Consensus       178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~  255 (327)
T 3cv0_A          178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQ  255 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcc
Confidence            9999999999999999999988753 3468889999999999999999999999988743 3357889999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCc-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          361 LNRALEFLIDLERDGFMV-----------GKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       361 ~~~a~~~~~~m~~~g~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      +++|.+.++++.+.....           +...+..+..++.+.|++++|..++++.
T Consensus       256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            999999999988752211           4778999999999999999999998753

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.77  E-value=6.2e-18  Score=154.92  Aligned_cols=280  Identities=11%  Similarity=0.042  Sum_probs=137.6

Q ss_pred             HHHHhcCChhhhhhhHHHHHHHHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCC
Q 014507           89 KQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEA  168 (423)
Q Consensus        89 ~~~a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~  168 (423)
                      .+.|..++++++.++  +|..+..++.+.|++++|++.|.+.  +|..+|..++.++...|+++++..++...++.  .+
T Consensus        19 ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~   92 (449)
T 1b89_A           19 LDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--AR   92 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--Cc
Confidence            588888999997664  9999999999999999999999874  67779999999999999999999977766653  45


Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM  248 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  248 (423)
                      ++.+.+.++.+|.+.|+++++.++++       .|+..+|+.+...|...|.+++|..+|..+         ..|..+..
T Consensus        93 ~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~  156 (449)
T 1b89_A           93 ESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLAS  156 (449)
T ss_dssp             ----------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------TCHHHHHH
T ss_pred             cchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHH
Confidence            67889999999999999999998885       367789999999999999999999999977         37999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507          249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK  328 (423)
Q Consensus       249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  328 (423)
                      ++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|......+     ..++.....++..|.+.|++++
T Consensus       157 ~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Yek~G~~eE  225 (449)
T 1b89_A          157 TLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEE  225 (449)
T ss_dssp             HHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHHHHCCCHHH
Confidence            999999999999999988      27789999999999999999996655542     2344445579999999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCc------CHHHHHHHHHHHHHcCCHHHHHH
Q 014507          329 AYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD-GFMV------GKEASCTLAAWFKRLGVVEEVEH  401 (423)
Q Consensus       329 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~------~~~~~~~l~~~~~~~g~~~~A~~  401 (423)
                      |..+++...... +-....|+-+.-++++- ++++..+.++..... .++|      +...|..++-.|.+.|+++.|..
T Consensus       226 ai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~  303 (449)
T 1b89_A          226 LITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  303 (449)
T ss_dssp             HHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence            999999987643 34567788887777764 455555555544433 4544      46678889999999999998877


Q ss_pred             HH
Q 014507          402 VL  403 (423)
Q Consensus       402 ~~  403 (423)
                      ..
T Consensus       304 tm  305 (449)
T 1b89_A          304 TM  305 (449)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.76  E-value=9e-16  Score=148.99  Aligned_cols=301  Identities=11%  Similarity=-0.003  Sum_probs=232.6

Q ss_pred             hHHHHHHHHhccCCCCCHHHHHHHHHHh--cCC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHH
Q 014507          103 CKAFVKQIICVSPETGNLSDLLAAWVRF--MKP-RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHG  179 (423)
Q Consensus       103 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  179 (423)
                      ....|..+...+.+.|++++|++.|++.  ..| +..++..+..++...|+++.|...+...++.. +.+...+..+..+
T Consensus        24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  102 (537)
T 3fp2_A           24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            4456777777888889999999998887  334 45778888888888899999988888887765 4567788888888


Q ss_pred             HHccCCHHHHHHHHHHHHHcC------------------------------------CCCCHH-----------------
Q 014507          180 YGKKMQIQNAENTLLAMKRRG------------------------------------FICDQV-----------------  206 (423)
Q Consensus       180 ~~~~~~~~~a~~~~~~m~~~g------------------------------------~~p~~~-----------------  206 (423)
                      +...|++++|...|+.+....                                    ..|+..                 
T Consensus       103 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  182 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSS  182 (537)
T ss_dssp             HHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHH
Confidence            888899999988886432110                                    011111                 


Q ss_pred             -------------HHHHHHHHHH--------HcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHHHHHHcCChhH
Q 014507          207 -------------TLTVMVVMYS--------KAGNLKMAEETFEEIKLLGEPLD-------KRSYGSMVMAYVRAGMLDR  258 (423)
Q Consensus       207 -------------~~~~li~~~~--------~~g~~~~A~~~~~~m~~~g~~~~-------~~~~~~li~~~~~~~~~~~  258 (423)
                                   ....+...+.        ..|++++|..+|+++.+.. +.+       ..++..+...+...|++++
T Consensus       183 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~  261 (537)
T 3fp2_A          183 VNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNNLLD  261 (537)
T ss_dssp             SCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence                         1111111111        1247889999999998764 223       2357777788889999999


Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          259 GEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       259 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      |...++++.+..  |+...+..+...+...|++++|.+.++++.+.. +.+..+|..+...+...|++++|.+.+++..+
T Consensus       262 A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  338 (537)
T 3fp2_A          262 AQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQS  338 (537)
T ss_dssp             HHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            999999999854  557889999999999999999999999998764 34788999999999999999999999999988


Q ss_pred             CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507          339 AGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       339 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  410 (423)
                      .. +-+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+.|++..+.+
T Consensus       339 ~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          339 LN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            53 2246788999999999999999999999998863 4567789999999999999999999999876543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.76  E-value=6.7e-17  Score=149.13  Aligned_cols=266  Identities=13%  Similarity=-0.016  Sum_probs=214.9

Q ss_pred             hhHHHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHH
Q 014507          102 RCKAFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIH  178 (423)
Q Consensus       102 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~  178 (423)
                      .+...|..+...+.+.|++++|++.|++++  .| +..++..+...+...|+++.|...+...++.. +.+...|..+..
T Consensus        63 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~  141 (365)
T 4eqf_A           63 KDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV  141 (365)
T ss_dssp             TTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            345567788888899999999999999983  34 55789999999999999999999999888765 456889999999


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHH
Q 014507          179 GYGKKMQIQNAENTLLAMKRRGFI---------CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP-LDKRSYGSMVM  248 (423)
Q Consensus       179 ~~~~~~~~~~a~~~~~~m~~~g~~---------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~~~~~~li~  248 (423)
                      .+...|++++|...++++.+....         .....+..+...+...|++++|...|+++.+.... ++..++..+..
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~  221 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV  221 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred             HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence            999999999999999999876321         01223445688899999999999999999987422 16889999999


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507          249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK  328 (423)
Q Consensus       249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  328 (423)
                      .|...|++++|...|+++.+.... +..++..+..+|.+.|++++|...|+++.+.. +.+..+|..+..+|...|++++
T Consensus       222 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  299 (365)
T 4eqf_A          222 LFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYRE  299 (365)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence            999999999999999999986543 78899999999999999999999999998753 3368899999999999999999


Q ss_pred             HHHHHHHHHHCC---CC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          329 AYTAFQNMRKAG---LE--------PSDKCVALILSACEKENQLNRALEFLID  370 (423)
Q Consensus       329 a~~~~~~m~~~~---~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~  370 (423)
                      |.+.|++..+..   ..        .+...|..+..++...|+.+.+..+.++
T Consensus       300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999999987621   01        1357889999999999999988887664

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.75  E-value=2.5e-16  Score=145.27  Aligned_cols=264  Identities=12%  Similarity=-0.025  Sum_probs=219.1

Q ss_pred             hHHHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHH
Q 014507          103 CKAFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHG  179 (423)
Q Consensus       103 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~  179 (423)
                      +...|..+...+.+.|++++|+..|++++  .| +..++..+...+...|+++.|...+...++.. +.+...+..+...
T Consensus        63 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~  141 (368)
T 1fch_A           63 DHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVS  141 (368)
T ss_dssp             TCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence            34567777888889999999999999983  34 45788889999999999999999999888775 4578899999999


Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHH
Q 014507          180 YGKKMQIQNAENTLLAMKRRGFICDQVTLTV---------------MVVMYSKAGNLKMAEETFEEIKLLGEPL-DKRSY  243 (423)
Q Consensus       180 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---------------li~~~~~~g~~~~A~~~~~~m~~~g~~~-~~~~~  243 (423)
                      +...|++++|.+.++++.+.... +...+..               .+..+...|++++|...|+++.+..... +..++
T Consensus       142 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~  220 (368)
T 1fch_A          142 FTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQ  220 (368)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHH
Confidence            99999999999999999887433 2222221               2444448999999999999999864221 58899


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 014507          244 GSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMA  323 (423)
Q Consensus       244 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  323 (423)
                      ..+...+.+.|++++|...++++.+.... +..++..+...+.+.|++++|...++++.... +.+...+..+..+|.+.
T Consensus       221 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~  298 (368)
T 1fch_A          221 CGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINL  298 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHC
Confidence            99999999999999999999999886433 67899999999999999999999999988753 34688999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          324 GQSQKAYTAFQNMRKAGLE----------PSDKCVALILSACEKENQLNRALEFLID  370 (423)
Q Consensus       324 g~~~~a~~~~~~m~~~~~~----------p~~~~~~~li~~~~~~g~~~~a~~~~~~  370 (423)
                      |++++|.+.|++..+....          ....+|..+..++...|+.++|..++++
T Consensus       299 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          299 GAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             TCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            9999999999998763211          1268899999999999999999988764

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.74  E-value=5.9e-16  Score=140.08  Aligned_cols=262  Identities=10%  Similarity=-0.020  Sum_probs=215.6

Q ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHhc--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHH
Q 014507          105 AFVKQIICVSPETGNLSDLLAAWVRFM--KP-RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYG  181 (423)
Q Consensus       105 ~~~~~ll~~~~~~g~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  181 (423)
                      ..|-.+...+...|++++|++.|++..  .| +..++..+...+...|+++.|...+....+.. +.+...+..+...+.
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~  100 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT  100 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHH
Confidence            345556667778899999999999973  34 45778888889999999999999999888764 457888999999999


Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507          182 KKMQIQNAENTLLAMKRRGFICDQVTLTVM--------------VV-MYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM  246 (423)
Q Consensus       182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  246 (423)
                      ..|++++|.+.++++.+.... +...+..+              .. .+...|++++|...++++.+.. +.+..++..+
T Consensus       101 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l  178 (327)
T 3cv0_A          101 NEHNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL  178 (327)
T ss_dssp             HTTCHHHHHHHHHHHHHTSTT-TTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence            999999999999999887432 23333333              22 3677889999999999999875 4478899999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507          247 VMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS  326 (423)
Q Consensus       247 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  326 (423)
                      ...+...|++++|...++++.+.... +..++..+...+...|++++|...++++.+.. +.+...+..+..+|...|++
T Consensus       179 a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~  256 (327)
T 3cv0_A          179 GVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQY  256 (327)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccH
Confidence            99999999999999999999886543 67899999999999999999999999988753 34688999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          327 QKAYTAFQNMRKAGLEP-----------SDKCVALILSACEKENQLNRALEFLIDL  371 (423)
Q Consensus       327 ~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m  371 (423)
                      ++|.+.+++..+.....           +...+..+..++...|++++|..++++.
T Consensus       257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  312 (327)
T 3cv0_A          257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN  312 (327)
T ss_dssp             HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            99999999988732111           3678999999999999999999988754

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.73  E-value=9.2e-15  Score=130.26  Aligned_cols=269  Identities=10%  Similarity=0.033  Sum_probs=210.6

Q ss_pred             CCCCHHHHHHHHHHhcC--CCh--hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHH
Q 014507          116 ETGNLSDLLAAWVRFMK--PRR--ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAEN  191 (423)
Q Consensus       116 ~~g~~~~a~~~~~~~~~--p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  191 (423)
                      ..|++..|++.+++...  |+.  .....+.+++...|+.+.+...++.    .-+|+..++..+...+...++.++|.+
T Consensus        11 ~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~~A~~   86 (291)
T 3mkr_A           11 YIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRDAIVA   86 (291)
T ss_dssp             HTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHHHHHH
Confidence            46899999999887633  443  3445567889999999888754432    345677888899999999999999999


Q ss_pred             HHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 014507          192 TLLAMKRRGFIC-DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE  270 (423)
Q Consensus       192 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  270 (423)
                      .++++...+..| +...+..+...+...|++++|++.+++      +.+...+..+...+.+.|++++|.+.|+++.+..
T Consensus        87 ~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~  160 (291)
T 3mkr_A           87 ELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQD  160 (291)
T ss_dssp             HHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC
Confidence            999998877545 566677778999999999999999987      4678899999999999999999999999998865


Q ss_pred             CCCCHHH---HHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014507          271 VYVGSEV---YKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKC  347 (423)
Q Consensus       271 ~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  347 (423)
                        |+...   ...++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|.+.+++..+.. +-+..+
T Consensus       161 --p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~  236 (291)
T 3mkr_A          161 --EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPET  236 (291)
T ss_dssp             --TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             --cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHH
Confidence              44321   1233455556799999999999998863 5688899999999999999999999999988743 235788


Q ss_pred             HHHHHHHHHHcCCHHH-HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          348 VALILSACEKENQLNR-ALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVL  403 (423)
Q Consensus       348 ~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~  403 (423)
                      +..++..+...|+.++ +.++++++.+.  .|+...   +.+...+.+.++++..-|
T Consensus       237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~--~P~~~~---~~d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          237 LINLVVLSQHLGKPPEVTNRYLSQLKDA--HRSHPF---IKEYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTTCHH---HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHh--CCCChH---HHHHHHHHHHHHHHHHHc
Confidence            9999999999999875 67899988874  454332   334455666666665544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.72  E-value=3.4e-15  Score=133.06  Aligned_cols=252  Identities=11%  Similarity=-0.003  Sum_probs=201.2

Q ss_pred             HHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 014507          143 KQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLK  222 (423)
Q Consensus       143 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  222 (423)
                      +..-..|+++.+....+................+.++|...|+++.|...++.   . -+|+..++..+...+...++.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCCcHH
Confidence            34445788888877765543332222234556678999999999999986654   2 3557788899999999999999


Q ss_pred             HHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 014507          223 MAEETFEEIKLLGEPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAI  301 (423)
Q Consensus       223 ~A~~~~~~m~~~g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  301 (423)
                      +|.+.++++...+..| +...+..+...+...|++++|.+.+++      +.+...+..+...+.+.|++++|.+.++.+
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  156 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM  156 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            9999999999876545 566777788999999999999999987      457889999999999999999999999999


Q ss_pred             HHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCc
Q 014507          302 QFAGITPDARMC---ALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMV  378 (423)
Q Consensus       302 ~~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~  378 (423)
                      .+.  .|+....   ...+..+...|++++|..+|+++.+.. +.+...++.+..++.+.|++++|...+++..+.. +-
T Consensus       157 ~~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~  232 (291)
T 3mkr_A          157 QDQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SG  232 (291)
T ss_dssp             HHH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             Hhh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CC
Confidence            886  3553221   223344455699999999999999863 4578899999999999999999999999988853 45


Q ss_pred             CHHHHHHHHHHHHHcCCHHH-HHHHHHHhcc
Q 014507          379 GKEASCTLAAWFKRLGVVEE-VEHVLREYGL  408 (423)
Q Consensus       379 ~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~  408 (423)
                      +..++..++..+...|+.++ +.++++++.+
T Consensus       233 ~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~  263 (291)
T 3mkr_A          233 HPETLINLVVLSQHLGKPPEVTNRYLSQLKD  263 (291)
T ss_dssp             CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            78889999999999999976 5788887654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.71  E-value=7.5e-17  Score=147.77  Aligned_cols=252  Identities=11%  Similarity=0.064  Sum_probs=114.0

Q ss_pred             CCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 014507          116 ETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLA  195 (423)
Q Consensus       116 ~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  195 (423)
                      +.|++++|.+++++...|  .+|..+..++.+.|++++|...+..      .+|..+|..++.++...|++++|+..++.
T Consensus        15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~   86 (449)
T 1b89_A           15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM   86 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence            668899999999999555  4999999999999999999888753      36888999999999999999999998877


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 014507          196 MKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGS  275 (423)
Q Consensus       196 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  275 (423)
                      ..+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..+...|...|.+++|...|..+         
T Consensus        87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------  148 (449)
T 1b89_A           87 ARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------  148 (449)
T ss_dssp             ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------
T ss_pred             HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence            7664  4467889999999999999999998885       377789999999999999999999999977         


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507          276 EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC  355 (423)
Q Consensus       276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  355 (423)
                      ..|..++.++.+.|++++|.+.++++      .++.+|..++.+|...|+++.|......+     ..++.-...++..|
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~lv~~Y  217 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYY  217 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHHHHHHH
Confidence            37999999999999999999999988      27899999999999999999996655442     23334455789999


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          356 EKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       356 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      .+.|++++|..+++...... +-...+|+-|..+|++- +.++..+.++..
T Consensus       218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~  266 (449)
T 1b89_A          218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELF  266 (449)
T ss_dssp             HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHH
Confidence            99999999999999987654 45677888887777764 344444444433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.68  E-value=2.1e-14  Score=125.05  Aligned_cols=222  Identities=14%  Similarity=0.013  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE--PLD----KRSYGS  245 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~--~~~----~~~~~~  245 (423)
                      .|..+...+...|++++|...|++..+..  .+...|..+...+...|++++|...+++..+...  .++    ..++..
T Consensus         7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            34445555555555555555555555544  3455555555555555555555555555544210  111    344555


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507          246 MVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ  325 (423)
Q Consensus       246 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  325 (423)
                      +...+...|++++|...|++..+..  |+.       ..+.+.|++++|...++.+.... +.+...+..+...+...|+
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  154 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD  154 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence            5555555555555555555555432  221       22333455555555555555431 1133445555555555555


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          326 SQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLRE  405 (423)
Q Consensus       326 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  405 (423)
                      +++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...|.+.|++++|.+.|++
T Consensus       155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            555555555555432 2234555555555555555555555555555432 22345555555555555555555555554


Q ss_pred             hc
Q 014507          406 YG  407 (423)
Q Consensus       406 m~  407 (423)
                      ..
T Consensus       233 a~  234 (258)
T 3uq3_A          233 AR  234 (258)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.67  E-value=4e-13  Score=129.03  Aligned_cols=335  Identities=12%  Similarity=0.014  Sum_probs=268.6

Q ss_pred             hcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-----HHHHHHhcCChhhhh-hhHHHHHHHHhccCC----C
Q 014507           48 SLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-----EQKQAISQFPRKMTK-RCKAFVKQIICVSPE----T  117 (423)
Q Consensus        48 ~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-----~~~~~a~~~~~~m~~-~~~~~~~~ll~~~~~----~  117 (423)
                      .+++++|+.+  |++..+.|..     ..+..+...|..     .+.+.|..+|++..+ .+...+..|-..|..    .
T Consensus        56 ~~~~~~A~~~--~~~a~~~~~~-----~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~  128 (490)
T 2xm6_A           56 TKDLTQAMDW--FRRAAEQGYT-----PAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVK  128 (490)
T ss_dssp             CCCHHHHHHH--HHHHHHTTCH-----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSC
T ss_pred             CcCHHHHHHH--HHHHHHCCCH-----HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCC
Confidence            6788888888  8877665431     233444444443     344777777777655 355666666666665    7


Q ss_pred             CCHHHHHHHHHHhcCC-ChhhHHHHHHHHHh----cCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHc----cCCHHH
Q 014507          118 GNLSDLLAAWVRFMKP-RRADWLAVLKQLKL----MEHPLYLQVAELALLEESFEANIRDYTKIIHGYGK----KMQIQN  188 (423)
Q Consensus       118 g~~~~a~~~~~~~~~p-~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~  188 (423)
                      +++++|++.|++...+ +..++..+...+..    .++.+.|...++...+.|   +...+..+...|..    .++.++
T Consensus       129 ~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~  205 (490)
T 2xm6_A          129 VDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAI  205 (490)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred             CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHH
Confidence            8999999999987443 45667777777776    778999999988887764   67888888888887    899999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHH
Q 014507          189 AENTLLAMKRRGFICDQVTLTVMVVMYSK----AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR----AGMLDRGE  260 (423)
Q Consensus       189 a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~  260 (423)
                      |.+.|++..+.|   +...+..+...|..    .+++++|..+|++..+.|   +...+..+...|..    .+++++|.
T Consensus       206 A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~  279 (490)
T 2xm6_A          206 SAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKAL  279 (490)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHH
Confidence            999999998876   66788888888886    889999999999998764   56777778888888    89999999


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHH
Q 014507          261 VLLREMDAQEVYVGSEVYKALLRGYSMN-----GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAG---QSQKAYTA  332 (423)
Q Consensus       261 ~~~~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~a~~~  332 (423)
                      ..|++..+.|   +...+..+...|...     ++.++|...|++..+.|   +...+..+...|...|   ++++|.++
T Consensus       280 ~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~  353 (490)
T 2xm6_A          280 EWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEW  353 (490)
T ss_dssp             HHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHH
T ss_pred             HHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHH
Confidence            9999998875   456778888888887     89999999999998864   5677888888888766   78999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 014507          333 FQNMRKAGLEPSDKCVALILSACEK----ENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR----LGVVEEVEHVLR  404 (423)
Q Consensus       333 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~  404 (423)
                      |++..+.|   +...+..+...|..    .+++++|...+++..+.|   +...+..|...|.+    .++.++|.+.|+
T Consensus       354 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  427 (490)
T 2xm6_A          354 FRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFD  427 (490)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            99998864   56788888888888    899999999999999875   56788889999998    899999999999


Q ss_pred             HhcccC
Q 014507          405 EYGLRE  410 (423)
Q Consensus       405 ~m~~~~  410 (423)
                      +..+.+
T Consensus       428 ~A~~~~  433 (490)
T 2xm6_A          428 TASTND  433 (490)
T ss_dssp             HHHHHH
T ss_pred             HHHHCC
Confidence            877654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=3.5e-14  Score=120.84  Aligned_cols=210  Identities=13%  Similarity=-0.003  Sum_probs=103.8

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014507          168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMV  247 (423)
Q Consensus       168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li  247 (423)
                      ++...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|...|++..+.. +.+...+..+.
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            34444555555555555555555555555544322 44455555555555555555555555555442 22344444444


Q ss_pred             HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507          248 MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQ  327 (423)
Q Consensus       248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  327 (423)
                      .++...+..             .  ..         .+...|++++|...+++..+.. +-+...|..+..++...|+++
T Consensus        81 ~~~~~~~~~-------------~--~~---------~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~  135 (217)
T 2pl2_A           81 EAYVALYRQ-------------A--ED---------RERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERD  135 (217)
T ss_dssp             HHHHHHHHT-------------C--SS---------HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHhhhh-------------h--hh---------hcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChH
Confidence            444444000             0  00         0001166666666666665532 224556666666666666666


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          328 KAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       328 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      +|.+.|++..+..  .+...+..+...+...|++++|...+++..+.. +.+...+..+...+.+.|++++|.+.|++..
T Consensus       136 ~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          136 KAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            6666666666644  455666666666666666666666666666532 2345566666666666677777766666543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.65  E-value=2.8e-14  Score=121.46  Aligned_cols=167  Identities=13%  Similarity=0.005  Sum_probs=132.9

Q ss_pred             CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014507          237 PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALL  316 (423)
Q Consensus       237 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  316 (423)
                      +++...+..+...+.+.|++++|...|++..+.... +...+..+...+.+.|++++|...+++..+.. +.+...+..+
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   79 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVL   79 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence            345566667777777777777777777777765443 56677777777777777777777777776642 2356677777


Q ss_pred             HHHHHHc-----------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 014507          317 INAYQMA-----------GQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASC  384 (423)
Q Consensus       317 i~~~~~~-----------g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  384 (423)
                      ..++...           |++++|...+++..+.  .| +...+..+...+...|++++|...+++..+..  .+...+.
T Consensus        80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~  155 (217)
T 2pl2_A           80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRS  155 (217)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHH
T ss_pred             HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHH
Confidence            7777777           9999999999999884  45 47888999999999999999999999999876  7889999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          385 TLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       385 ~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      .+..+|...|++++|...|++..+.
T Consensus       156 ~la~~~~~~g~~~~A~~~~~~al~~  180 (217)
T 2pl2_A          156 ALAELYLSMGRLDEALAQYAKALEQ  180 (217)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999999987653

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.65  E-value=1.5e-13  Score=119.58  Aligned_cols=225  Identities=12%  Similarity=-0.042  Sum_probs=181.4

Q ss_pred             hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CC----HHHHH
Q 014507          136 ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI--CD----QVTLT  209 (423)
Q Consensus       136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~----~~~~~  209 (423)
                      ..+..+...+...|+++.|...+...++..  .+...+..+..++...|++++|...+++..+....  ++    ..+|.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            456667777777888888888777777766  77888888899999999999999999988765322  12    57888


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 014507          210 VMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG  289 (423)
Q Consensus       210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  289 (423)
                      .+...+...|++++|...|++..+.  .|+.       ..+...|++++|...++++.+.... +...+..+...+...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence            8899999999999999999998885  3453       3456678889999999998886433 5667888889999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507          290 NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLI  369 (423)
Q Consensus       290 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  369 (423)
                      ++++|...+++..... +.+...|..+..+|...|++++|.+.+++..+.. +.+...+..+...+...|++++|...++
T Consensus       154 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD  231 (258)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            9999999999988753 3467888999999999999999999999988753 3357788889999999999999999999


Q ss_pred             HHHHC
Q 014507          370 DLERD  374 (423)
Q Consensus       370 ~m~~~  374 (423)
                      +..+.
T Consensus       232 ~a~~~  236 (258)
T 3uq3_A          232 AARTK  236 (258)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            88764

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.64  E-value=1.3e-12  Score=115.25  Aligned_cols=222  Identities=11%  Similarity=0.009  Sum_probs=136.5

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK----AGNLKMAEETFEEIKLLGEPLDKRSYG  244 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~  244 (423)
                      +...+..+...+...|++++|.+.|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            34455556666666666666666666666532   44556666666666    666666666666666654   555666


Q ss_pred             HHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014507          245 SMVMAYVR----AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM----NGNSEGAQRVFEAIQFAGITPDARMCALL  316 (423)
Q Consensus       245 ~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  316 (423)
                      .+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            66666666    666666666666666654   45566666666666    666666666666666543   45555566


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507          317 INAYQM----AGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEK----ENQLNRALEFLIDLERDGFMVGKEASCTLAA  388 (423)
Q Consensus       317 i~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~  388 (423)
                      ...|..    .+++++|.+.|++..+.+   +...+..+...+..    .+++++|...+++..+.+.   ...+..+..
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~  226 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN---GGGCFNLGA  226 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHH
Confidence            666665    666666666666666543   34555566666666    6666666666666665432   445555666


Q ss_pred             HHHH----cCCHHHHHHHHHHhcc
Q 014507          389 WFKR----LGVVEEVEHVLREYGL  408 (423)
Q Consensus       389 ~~~~----~g~~~~A~~~~~~m~~  408 (423)
                      .|.+    .|++++|.+.|++..+
T Consensus       227 ~~~~g~~~~~~~~~A~~~~~~a~~  250 (273)
T 1ouv_A          227 MQYNGEGVTRNEKQAIENFKKGCK  250 (273)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHH
T ss_pred             HHHcCCCcccCHHHHHHHHHHHHH
Confidence            6666    6666666666665443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.64  E-value=3.3e-13  Score=117.34  Aligned_cols=201  Identities=12%  Similarity=0.093  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      ...+..+...+...|++++|.+.|+++.+... .+...+..+...|...|++++|.+.|+++.+.. +.+...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            45667777777788888888888888776632 256777777888888888888888888877654 3366777777777


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507          250 YVRAGMLDRGEVLLREMDAQEVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK  328 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  328 (423)
                      +...|++++|...++++.+.+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            888888888888888777633333 45566777777778888888888887776643 2356777777777788888888


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          329 AYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       329 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      |.+.+++..+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus       194 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          194 ARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            888887776642 335666777777777778888888877777664

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.64  E-value=7e-12  Score=120.37  Aligned_cols=302  Identities=10%  Similarity=0.003  Sum_probs=247.9

Q ss_pred             HHHHHhcCChhhhh-hhHHHHHHHHhccCC----CCCHHHHHHHHHHhcC-CChhhHHHHHHHHHh----cCCchHHHHH
Q 014507           88 QKQAISQFPRKMTK-RCKAFVKQIICVSPE----TGNLSDLLAAWVRFMK-PRRADWLAVLKQLKL----MEHPLYLQVA  157 (423)
Q Consensus        88 ~~~~a~~~~~~m~~-~~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~-p~~~~~~~ll~~~~~----~~~~~~a~~~  157 (423)
                      +.+.|..+|++..+ .+...+..+-..|..    .+++++|++.|.+... -+...+..+-..+..    .++.+.|...
T Consensus        58 ~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~  137 (490)
T 2xm6_A           58 DLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDKAESVKW  137 (490)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence            44666666666544 455666667666666    8999999999999744 355677777778877    7899999999


Q ss_pred             HHHHhhcccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 014507          158 ELALLEESFEANIRDYTKIIHGYGK----KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK----AGNLKMAEETFE  229 (423)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~  229 (423)
                      ++...+.|   +...+..+...|..    .+++++|.+.|++..+.|   +...+..+...|..    .++.++|.++|+
T Consensus       138 ~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~  211 (490)
T 2xm6_A          138 FRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYR  211 (490)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHH
Confidence            98887765   56778888888877    789999999999998875   77888889999988    899999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHH
Q 014507          230 EIKLLGEPLDKRSYGSMVMAYVR----AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM----NGNSEGAQRVFEAI  301 (423)
Q Consensus       230 ~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m  301 (423)
                      +..+.|   +...+..+...|..    .+++++|...|++..+.|   +...+..+...|..    .++.++|...|+..
T Consensus       212 ~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a  285 (490)
T 2xm6_A          212 KSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKS  285 (490)
T ss_dssp             HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Confidence            998865   67788888888886    789999999999998875   45677777778887    89999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHH
Q 014507          302 QFAGITPDARMCALLINAYQMA-----GQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN---QLNRALEFLIDLER  373 (423)
Q Consensus       302 ~~~g~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~  373 (423)
                      .+.|   +...+..+...|...     +++++|.++|++..+.|   +...+..+...+...|   ++++|.+++++..+
T Consensus       286 ~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~  359 (490)
T 2xm6_A          286 AEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAA  359 (490)
T ss_dssp             HTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHH
T ss_pred             HHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHH
Confidence            8754   667778888888887     89999999999998865   4567777888887766   78899999999988


Q ss_pred             CCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHhcccC
Q 014507          374 DGFMVGKEASCTLAAWFKR----LGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       374 ~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~  410 (423)
                      .|   +...+..|...|..    .+++++|.+.|++..+.+
T Consensus       360 ~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~  397 (490)
T 2xm6_A          360 KG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG  397 (490)
T ss_dssp             TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             CC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence            64   57788889999998    899999999999876653

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.62  E-value=6.5e-13  Score=112.99  Aligned_cols=202  Identities=12%  Similarity=-0.002  Sum_probs=145.1

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM  248 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  248 (423)
                      +...+..+...+...|++++|.+.++++.+... .+...+..+...+...|++++|.+.|++..+.. +.+..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence            455677777778888888888888888777633 256777778888888888888888888877754 346677777777


Q ss_pred             HHHHc-CChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507          249 AYVRA-GMLDRGEVLLREMDAQEVYVG-SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS  326 (423)
Q Consensus       249 ~~~~~-~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  326 (423)
                      .+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence            88888 888888888888777322333 4567777777788888888888887776642 23567777777778888888


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          327 QKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       327 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                      ++|.+.+++..+.....+...+..+...+...|+.+.+..+++.+.+
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  210 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA  210 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            88888887776643113556666666677777777777777777765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.62  E-value=3.2e-13  Score=117.39  Aligned_cols=201  Identities=9%  Similarity=-0.024  Sum_probs=176.2

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014507          205 QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRG  284 (423)
Q Consensus       205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  284 (423)
                      ...|..+...+...|++++|...|+++.+.. +.+..++..+...+...|++++|.+.++++.+.... +...+..+...
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence            5678888999999999999999999998875 457889999999999999999999999999886543 77899999999


Q ss_pred             HHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507          285 YSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNR  363 (423)
Q Consensus       285 ~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  363 (423)
                      |...|++++|.+.++++...+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999998733345 56788889999999999999999999998753 3357889999999999999999


Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          364 ALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       364 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      |...++++.+. .+.+...+..+...+.+.|++++|.++++++.+.
T Consensus       194 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          194 ARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            99999999875 3456788899999999999999999999998654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.61  E-value=9.3e-13  Score=112.02  Aligned_cols=203  Identities=10%  Similarity=-0.028  Sum_probs=175.4

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR  283 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  283 (423)
                      +...|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++++.+.... +..++..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence            56678889999999999999999999998865 456889999999999999999999999999886543 6788999999


Q ss_pred             HHHhC-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507          284 GYSMN-GNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQL  361 (423)
Q Consensus       284 ~~~~~-g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  361 (423)
                      .+... |++++|...++.+.+.+..| +...+..+..++...|++++|.+.++++.+.. +.+...+..+...+...|++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~  163 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQL  163 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCH
Confidence            99999 99999999999998733334 36788899999999999999999999998743 23578899999999999999


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          362 NRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       362 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      ++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.
T Consensus       164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            999999999987532256777888888899999999999999988643

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.60  E-value=3.9e-13  Score=118.19  Aligned_cols=232  Identities=11%  Similarity=-0.000  Sum_probs=129.0

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 014507          173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPL--DKRSYGSMVMAY  250 (423)
Q Consensus       173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li~~~  250 (423)
                      +......+...|++++|...|++..+.... +...+..+...|...|++++|...+++..+.+..+  ...+|..+...+
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            334455556666666666666666655322 33455566666666666666666666666532111  123356666666


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507          251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAY  330 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  330 (423)
                      ...|++++|...|++..+.... +..++..+...|...|++++|...+++..+.. +.+...|..+...+...+++++|.
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666666666654332 44566666666666666666666666665441 224455555552333344666666


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHC-CCCcC------HHHHHHHHHHHHHcCCHHHHH
Q 014507          331 TAFQNMRKAGLEPSDKCVALILSACEKENQ---LNRALEFLIDLERD-GFMVG------KEASCTLAAWFKRLGVVEEVE  400 (423)
Q Consensus       331 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~-g~~~~------~~~~~~l~~~~~~~g~~~~A~  400 (423)
                      +.|++..+.. +.+...+..+...+...|+   +++|...+++..+. .-.|+      ...|..+...|.+.|++++|.
T Consensus       163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            6666666532 1224555555555655555   55566666655543 11122      245555666666666666666


Q ss_pred             HHHHHhcc
Q 014507          401 HVLREYGL  408 (423)
Q Consensus       401 ~~~~~m~~  408 (423)
                      +.|++..+
T Consensus       242 ~~~~~al~  249 (272)
T 3u4t_A          242 AAWKNILA  249 (272)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66666543

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.60  E-value=1.8e-13  Score=118.19  Aligned_cols=202  Identities=10%  Similarity=0.003  Sum_probs=146.6

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014507          168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMV  247 (423)
Q Consensus       168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li  247 (423)
                      .+...|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...|++..+.. +.+..++..+.
T Consensus        21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la   98 (243)
T 2q7f_A           21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAG   98 (243)
T ss_dssp             ---------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence            45566777788888889999999999888876433 67788888888889999999999998888764 44677888888


Q ss_pred             HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507          248 MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQ  327 (423)
Q Consensus       248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  327 (423)
                      ..+...|++++|...++++.+.... +...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (243)
T 2q7f_A           99 NVYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLD  176 (243)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred             HHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHH
Confidence            8888899999999999888876533 67788888888888999999999988887653 346778888888888899999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          328 KAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       328 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      +|.+.+++..+.. +.+..++..+...+...|++++|...++++.+.
T Consensus       177 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          177 EALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            9999988887743 335778888888888889999999998888774

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.59  E-value=8.7e-12  Score=109.84  Aligned_cols=223  Identities=9%  Similarity=-0.038  Sum_probs=181.6

Q ss_pred             hhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507          135 RADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGK----KMQIQNAENTLLAMKRRGFICDQVTLTV  210 (423)
Q Consensus       135 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~  210 (423)
                      ..++..+...+...++.+.|...+....+   +-+...+..+...+..    .+++++|...|++..+.+   +...+..
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~   79 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL   79 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence            34556666667777777777777776666   2345677778888888    899999999999988876   6788888


Q ss_pred             HHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014507          211 MVVMYSK----AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR----AGMLDRGEVLLREMDAQEVYVGSEVYKALL  282 (423)
Q Consensus       211 li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  282 (423)
                      +...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+.
T Consensus        80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg  153 (273)
T 1ouv_A           80 LGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILG  153 (273)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHH
Confidence            8888888    899999999999988865   77888888888888    899999999999988876   566777888


Q ss_pred             HHHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014507          283 RGYSM----NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQM----AGQSQKAYTAFQNMRKAGLEPSDKCVALILSA  354 (423)
Q Consensus       283 ~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  354 (423)
                      ..|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|.+.|++..+.+   +...+..+...
T Consensus       154 ~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~  227 (273)
T 1ouv_A          154 SLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM  227 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence            88887    899999999999888754   56778888888888    899999999999988764   25677778888


Q ss_pred             HHH----cCCHHHHHHHHHHHHHCC
Q 014507          355 CEK----ENQLNRALEFLIDLERDG  375 (423)
Q Consensus       355 ~~~----~g~~~~a~~~~~~m~~~g  375 (423)
                      +..    .+++++|.+.+++..+.|
T Consensus       228 ~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          228 QYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHcCCCcccCHHHHHHHHHHHHHcC
Confidence            888    889999999999888765

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.57  E-value=2.5e-13  Score=117.24  Aligned_cols=201  Identities=14%  Similarity=0.053  Sum_probs=159.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR  283 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  283 (423)
                      ....|..+...+...|++++|..+|++..+.. +.+...+..+...+...|++++|...++++.+.... +...+..+..
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence            45677888889999999999999999998864 457889999999999999999999999999886543 7889999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507          284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNR  363 (423)
Q Consensus       284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  363 (423)
                      .+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~  177 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDE  177 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHH
Confidence            9999999999999999998764 4478889999999999999999999999998753 3467889999999999999999


Q ss_pred             HHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          364 ALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       364 a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      |...++++.+.. +.+..++..+...|.+.|++++|.+.+++..+.
T Consensus       178 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          178 ALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            999999998763 356888999999999999999999999988654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.57  E-value=8.4e-14  Score=122.62  Aligned_cols=224  Identities=11%  Similarity=-0.034  Sum_probs=133.1

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      ...+..+...+...|++++|...|++..+.... +..+|..+...|...|++++|...|++..+.. +.+..++..+...
T Consensus        43 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~  120 (275)
T 1xnf_A           43 AQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIA  120 (275)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-ccccHHHHHHHHH
Confidence            345556666666677777777777766665332 56666667777777777777777777766653 2345666667777


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507          250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKA  329 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  329 (423)
                      +.+.|++++|...++++.+..  |+.......+..+...|++++|...++...... +++...+. ++..+...++.++|
T Consensus       121 ~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a  196 (275)
T 1xnf_A          121 LYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTL  196 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHH
Confidence            777777777777777766643  232333334444455577777777776655432 23333333 55556666667777


Q ss_pred             HHHHHHHHHCCCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          330 YTAFQNMRKAGLE--P-SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVL  403 (423)
Q Consensus       330 ~~~~~~m~~~~~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~  403 (423)
                      .+.+++..+....  | +...+..+...+...|++++|...+++..+..  |+.  +.....++...|++++|.+.+
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence            7777766542211  1 14566777777777777777777777777642  321  222344566667777776665

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.57  E-value=3.2e-12  Score=124.04  Aligned_cols=182  Identities=7%  Similarity=-0.034  Sum_probs=119.8

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCChh-------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 014507          223 MAEETFEEIKLLGEPLDKRSYGSMVMAYVR-------AGMLD-------RGEVLLREMDAQEVYVGSEVYKALLRGYSMN  288 (423)
Q Consensus       223 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  288 (423)
                      +|..+|++..... +.+...|..+...+.+       .|+++       +|..+|++..+.-.+-+...|..++..+.+.
T Consensus       256 ~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          256 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            4555565555542 3356666666666654       57766       7788887777632223567777888888888


Q ss_pred             CCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHH
Q 014507          289 GNSEGAQRVFEAIQFAGITPD--ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSA-CEKENQLNRAL  365 (423)
Q Consensus       289 g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~  365 (423)
                      |++++|..+|+++.+.  .|+  ...|..++..+.+.|++++|.++|++..+.. +.+...|...... +...|++++|.
T Consensus       335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~  411 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF  411 (530)
T ss_dssp             TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred             CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence            8888888888887764  443  2467777777777888888888888877642 1122333222222 23577888888


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          366 EFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       366 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      .+|++..+. .+.+...+..++..+.+.|+.++|..+|++....
T Consensus       412 ~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~  454 (530)
T 2ooe_A          412 KIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTS  454 (530)
T ss_dssp             HHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhc
Confidence            888877664 2235677777787777888888888888877654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.57  E-value=8.7e-13  Score=121.65  Aligned_cols=228  Identities=8%  Similarity=-0.006  Sum_probs=153.6

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN-LKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      ..|+.+...+.+.|++++|+..+++..+.... +...|+.+...+...|+ +++|+..|++..+.. +-+...|..+..+
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~  175 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence            44556666666777777777777777766433 56677777777777775 777777777777654 3356677777777


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHH
Q 014507          250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQM-AGQSQK  328 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~  328 (423)
                      +...|++++|...|+++.+.... +...|..+..++.+.|++++|+..++++.+.. +-+...|+.+..++.. .|..++
T Consensus       176 ~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~e  253 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  253 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchH
Confidence            77777777777777777775544 66677777777777777777777777777653 2366677777777777 555466


Q ss_pred             H-----HHHHHHHHHCCCCC-CHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcC------
Q 014507          329 A-----YTAFQNMRKAGLEP-SDKCVALILSACEKEN--QLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLG------  394 (423)
Q Consensus       329 a-----~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g------  394 (423)
                      |     ++.+++..+  +.| +...|..+...+...|  ++++|.+.+.++ + ..+.+...+..+...|.+.|      
T Consensus       254 A~~~~el~~~~~Al~--l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~  329 (382)
T 2h6f_A          254 AVLEREVQYTLEMIK--LVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDN  329 (382)
T ss_dssp             HHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSS
T ss_pred             HHHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccc
Confidence            6     466666665  334 3566777666677666  467777777776 2 23345666777777777753      


Q ss_pred             ---CHHHHHHHHHHh
Q 014507          395 ---VVEEVEHVLREY  406 (423)
Q Consensus       395 ---~~~~A~~~~~~m  406 (423)
                         ..++|.++|+++
T Consensus       330 ~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          330 KEDILNKALELCEIL  344 (382)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHH
Confidence               247777777777

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.55  E-value=3.1e-12  Score=112.40  Aligned_cols=246  Identities=10%  Similarity=-0.053  Sum_probs=174.0

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 014507          138 WLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFIC--DQVTLTVMVVMY  215 (423)
Q Consensus       138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~  215 (423)
                      +......+...|+++.|...+...++.. +.+...+..+...+...|++++|...+++..+.+..+  ....|..+...+
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~   84 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKIL   84 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHH
Confidence            3344455566666666666666665543 2344577777888888888888888888887743222  234478888888


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 014507          216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQ  295 (423)
Q Consensus       216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  295 (423)
                      ...|++++|.+.|++..+.. +.+..++..+...|...|++++|...+++..+.... +...+..+...+...+++++|.
T Consensus        85 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~  162 (272)
T 3u4t_A           85 MKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKAD  162 (272)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHH
Confidence            88888999988888888764 345678888888888999999999988888876332 5667777773444455899999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHHcCCHHHHH
Q 014507          296 RVFEAIQFAGITPDARMCALLINAYQMAGQ---SQKAYTAFQNMRKAG-LEPS------DKCVALILSACEKENQLNRAL  365 (423)
Q Consensus       296 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~p~------~~~~~~li~~~~~~g~~~~a~  365 (423)
                      +.|++..+.. +.+...+..+..++...|+   +++|...+++..+.. -.|+      ...|..+...+...|++++|.
T Consensus       163 ~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  241 (272)
T 3u4t_A          163 SSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKAD  241 (272)
T ss_dssp             HHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9998888753 2356777778888888888   778888888876521 1233      256777888888899999999


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHH
Q 014507          366 EFLIDLERDGFMVGKEASCTLAA  388 (423)
Q Consensus       366 ~~~~~m~~~g~~~~~~~~~~l~~  388 (423)
                      +.+++..+.. +-+......+..
T Consensus       242 ~~~~~al~~~-p~~~~a~~~l~~  263 (272)
T 3u4t_A          242 AAWKNILALD-PTNKKAIDGLKM  263 (272)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHC-
T ss_pred             HHHHHHHhcC-ccHHHHHHHhhh
Confidence            9999888752 234444444433

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.55  E-value=5.3e-13  Score=117.47  Aligned_cols=225  Identities=12%  Similarity=0.035  Sum_probs=183.1

Q ss_pred             HHccCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 014507          180 YGKKMQIQNAENTLLAMKRRGFI---CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGML  256 (423)
Q Consensus       180 ~~~~~~~~~a~~~~~~m~~~g~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~  256 (423)
                      ....|++++|...++++.+....   .+..+|..+...+...|++++|...|++..+.. +.+..+|..+...+...|++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCH
Confidence            34568899999999999886421   246778899999999999999999999999875 44789999999999999999


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          257 DRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       257 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  336 (423)
                      ++|...|++..+.... +..++..+...|.+.|++++|...++++.+.  .|+.......+..+...|++++|...+++.
T Consensus        94 ~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  170 (275)
T 1xnf_A           94 DAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH  170 (275)
T ss_dssp             HHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9999999999986543 6789999999999999999999999999875  455445555556667789999999999887


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--c-CHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507          337 RKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFM--V-GKEASCTLAAWFKRLGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       337 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  410 (423)
                      .... +++...+ .++..+...++.++|...+++..+....  | +...+..+...|.+.|++++|.+.|++..+.+
T Consensus       171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  245 (275)
T 1xnf_A          171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN  245 (275)
T ss_dssp             HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence            7643 3343344 4677777888889999999988764211  1 25788899999999999999999999987653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.55  E-value=4e-12  Score=129.86  Aligned_cols=307  Identities=9%  Similarity=0.063  Sum_probs=190.5

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCC---cceeeeeeccccchHHHHHHhcCChhhhhhhHHHHHHHHhccCCCCCHHH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDT---SMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSD  122 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~---~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~  122 (423)
                      ...|.+.+|+.+  +++.+-   .|+.   ....-+.++.+-.+.+.........+...   .....+...+...|.+++
T Consensus       996 ~~aglp~EaieL--LEKivl---~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~---~d~~eIA~Iai~lglyEE 1067 (1630)
T 1xi4_A          996 MTADLPNELIEL--LEKIVL---DNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDN---YDAPDIANIAISNELFEE 1067 (1630)
T ss_pred             HhCCCHHHHHHH--HHHHHc---CCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhh---ccHHHHHHHHHhCCCHHH
Confidence            788899999888  887662   2331   11222333332223222222222222222   223445667778899999


Q ss_pred             HHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 014507          123 LLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI  202 (423)
Q Consensus       123 a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~  202 (423)
                      |..+|++...++. ..+.++.   ..+++++|..+....      -+..+|..+..++.+.|++++|...|.+.      
T Consensus      1068 Af~IYkKa~~~~~-A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAIdsYiKA------ 1131 (1630)
T 1xi4_A         1068 AFAIFRKFDVNTS-AVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------ 1131 (1630)
T ss_pred             HHHHHHHcCCHHH-HHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHHHHHHhc------
Confidence            9999988642221 1222222   566677776665533      34667778888888888888888888553      


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014507          203 CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALL  282 (423)
Q Consensus       203 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  282 (423)
                      -|...|..++.++.+.|++++|.++|....+..  ++....+.++.+|++.+++++...+.    +   .++...|..+.
T Consensus      1132 dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iG 1202 (1630)
T 1xi4_A         1132 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVG 1202 (1630)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHH
Confidence            267777788888888888888888887766643  33333445777788877777544332    1   23555666777


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507          283 RGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLN  362 (423)
Q Consensus       283 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  362 (423)
                      ..|...|++++|..+|...         ..|..+..+|.+.|++++|.+.+++.      -+..+|..+-.+|...|++.
T Consensus      1203 d~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~ 1267 (1630)
T 1xi4_A         1203 DRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR 1267 (1630)
T ss_pred             HHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHH
Confidence            7778888888888888774         36777777777778888777777755      23456666666666666666


Q ss_pred             HHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          363 RALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLRE  405 (423)
Q Consensus       363 ~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  405 (423)
                      .|......     +..++..+..++..|.+.|.+++|..+++.
T Consensus      1268 LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~ 1305 (1630)
T 1xi4_A         1268 LAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEA 1305 (1630)
T ss_pred             HHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            55554432     334455555666666666666666666654

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.54  E-value=8.3e-12  Score=115.09  Aligned_cols=246  Identities=12%  Similarity=-0.003  Sum_probs=173.9

Q ss_pred             hHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507          137 DWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQ-IQNAENTLLAMKRRGFICDQVTLTVMVVMY  215 (423)
Q Consensus       137 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  215 (423)
                      .|..+...+...|+.++|...+...++.. +-+...|+.+..++...|+ +++|+..|++..+.... +...|..+...+
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~~  176 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHH
Confidence            44555555556666666666666666544 3456777777788888886 88888888888877544 677888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-CCCHHHH
Q 014507          216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM-NGNSEGA  294 (423)
Q Consensus       216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a  294 (423)
                      ...|++++|+..|+++.+.. +-+...|..+..++.+.|++++|+..++++.+.... +...|+.+..++.+ .|..++|
T Consensus       177 ~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence            88888888888888888765 446778888888888888888888888888886654 67788888888888 5554666


Q ss_pred             -----HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--------
Q 014507          295 -----QRVFEAIQFAGITPDARMCALLINAYQMAG--QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN--------  359 (423)
Q Consensus       295 -----~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--------  359 (423)
                           ++.+++..... +-+...|+.+...+...|  ++++|.+.+.++ +. -..+...+..+...+.+.|        
T Consensus       255 ~~~~el~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~~~~~~~~~~  331 (382)
T 2h6f_A          255 VLEREVQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDMLENQCDNKE  331 (382)
T ss_dssp             HHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred             HHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHHhcccccchH
Confidence                 47777766642 236677888888888777  578888888877 32 2334667777887877764        


Q ss_pred             -CHHHHHHHHHHH-HHCCCCcC-HHHHHHHHHHHH
Q 014507          360 -QLNRALEFLIDL-ERDGFMVG-KEASCTLAAWFK  391 (423)
Q Consensus       360 -~~~~a~~~~~~m-~~~g~~~~-~~~~~~l~~~~~  391 (423)
                       .+++|.++++++ .+  +.|. ...|..+...+.
T Consensus       332 ~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          332 DILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             HHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence             257888888887 44  3343 445555555443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.52  E-value=1.7e-12  Score=123.79  Aligned_cols=330  Identities=15%  Similarity=-0.022  Sum_probs=183.5

Q ss_pred             eeeeeeccccc-hHHHHHHhcCChhhhh------------hhHHHHHHHHhccCCCCCHHHHHHHHHHhc----------
Q 014507           75 FTWIQIGPNIT-EEQKQAISQFPRKMTK------------RCKAFVKQIICVSPETGNLSDLLAAWVRFM----------  131 (423)
Q Consensus        75 ~~~~~l~~~~~-~~~~~~a~~~~~~m~~------------~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~----------  131 (423)
                      ..||.+...+. .++.+.|...|++..+            ....+|+.+...|...|++++|+..+++..          
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            44555555544 2444566555554321            123567777777777777777777776641          


Q ss_pred             CCC-hhhHHHHHHHHHhc--CCchHHHHHHHHHhhcccCCCHHHHHHHHHH---HHccCCHHHHHHHHHHHHHcCCCCCH
Q 014507          132 KPR-RADWLAVLKQLKLM--EHPLYLQVAELALLEESFEANIRDYTKIIHG---YGKKMQIQNAENTLLAMKRRGFICDQ  205 (423)
Q Consensus       132 ~p~-~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~g~~p~~  205 (423)
                      .++ ..++.....++...  ++.+.|...++..++..+ -++..+..+..+   +...++.++|++.+++..+.... +.
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~-~~  209 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD-NQ  209 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSS-CH
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCc-ch
Confidence            111 23454444444443  356677777776665432 234444444433   33456666777777776665332 45


Q ss_pred             HHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHH
Q 014507          206 VTLTVMVVMYSKA----GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKAL  281 (423)
Q Consensus       206 ~~~~~li~~~~~~----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  281 (423)
                      ..+..+...+...    |++++|.+++++..... +.+..++..+...|...|++++|...+++..+.... +..++..+
T Consensus       210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l  287 (472)
T 4g1t_A          210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQI  287 (472)
T ss_dssp             HHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHH
Confidence            5555555444443    45667777777776654 345667777777777777777777777777765433 45555555


Q ss_pred             HHHHHhC-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507          282 LRGYSMN-------------------GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE  342 (423)
Q Consensus       282 i~~~~~~-------------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  342 (423)
                      ...|...                   +..+.|...++...... +.+..++..+...|...|++++|.+.|++..+....
T Consensus       288 g~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~  366 (472)
T 4g1t_A          288 GCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELT  366 (472)
T ss_dssp             HHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCC
Confidence            5444321                   22455666666655432 224455666777777777777777777777664322


Q ss_pred             CCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCC-----------------------CCcCHHHHHHHHHHHHHcCCH
Q 014507          343 PSDK--CVALILS-ACEKENQLNRALEFLIDLERDG-----------------------FMVGKEASCTLAAWFKRLGVV  396 (423)
Q Consensus       343 p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~g-----------------------~~~~~~~~~~l~~~~~~~g~~  396 (423)
                      |...  .+..+.. .....|+.++|+..+++..+..                       -+.+..+|..+...|...|++
T Consensus       367 ~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~  446 (472)
T 4g1t_A          367 PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKM  446 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHC
T ss_pred             ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence            2211  1222221 2235677777777776655431                       134577899999999999999


Q ss_pred             HHHHHHHHHhccc
Q 014507          397 EEVEHVLREYGLR  409 (423)
Q Consensus       397 ~~A~~~~~~m~~~  409 (423)
                      ++|.+.|++-.+.
T Consensus       447 ~~A~~~y~kALe~  459 (472)
T 4g1t_A          447 QQADEDSERGLES  459 (472)
T ss_dssp             C------------
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999987664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.51  E-value=3.2e-11  Score=114.99  Aligned_cols=300  Identities=9%  Similarity=-0.026  Sum_probs=217.4

Q ss_pred             HHHHHHHHhccCCCCCHHHHHHHHHHhc-----------CCC-hhhHHHHHHHHHhcCCchHHHHHHHHHhhcc------
Q 014507          104 KAFVKQIICVSPETGNLSDLLAAWVRFM-----------KPR-RADWLAVLKQLKLMEHPLYLQVAELALLEES------  165 (423)
Q Consensus       104 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~-----------~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------  165 (423)
                      ...||.+-..+...|++++|++.|++..           .|+ ..+|+.+..++...|+.++|...+....+..      
T Consensus        51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~  130 (472)
T 4g1t_A           51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP  130 (472)
T ss_dssp             CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence            3568888889999999999999998751           233 3678999999999999999988887765421      


Q ss_pred             -cCCCHHHHHHHHHHHHcc--CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH---HHHcCCHHHHHHHHHHHHHcCCCCC
Q 014507          166 -FEANIRDYTKIIHGYGKK--MQIQNAENTLLAMKRRGFICDQVTLTVMVVM---YSKAGNLKMAEETFEEIKLLGEPLD  239 (423)
Q Consensus       166 -~~~~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~g~~~~  239 (423)
                       ......++.....++.+.  +++++|...|++..+..+. +...+..+...   +...++.++|++.+++..+.. +.+
T Consensus       131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~  208 (472)
T 4g1t_A          131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDN  208 (472)
T ss_dssp             SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSC
T ss_pred             cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccc
Confidence             112346666666565554  5799999999999887433 55556555544   445678889999999888764 446


Q ss_pred             HHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014507          240 KRSYGSMVMAYVR----AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCAL  315 (423)
Q Consensus       240 ~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~  315 (423)
                      ..++..+...+..    .+++++|.+.+++..+.... +..++..+...|.+.|++++|...+++..+.. +-+...+..
T Consensus       209 ~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~  286 (472)
T 4g1t_A          209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQ  286 (472)
T ss_dssp             HHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHH
Confidence            6777766666655    45788999999998876544 77889999999999999999999999988753 235667777


Q ss_pred             HHHHHHHc-------------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507          316 LINAYQMA-------------------GQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGF  376 (423)
Q Consensus       316 li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  376 (423)
                      +..+|...                   +.+++|...++...+.. +.+..++..+...+...|++++|...|++..+...
T Consensus       287 lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~  365 (472)
T 4g1t_A          287 IGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL  365 (472)
T ss_dssp             HHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence            76665432                   23567777887777643 22355678889999999999999999999988644


Q ss_pred             CcCH--HHHHHHHH-HHHHcCCHHHHHHHHHHhcc
Q 014507          377 MVGK--EASCTLAA-WFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       377 ~~~~--~~~~~l~~-~~~~~g~~~~A~~~~~~m~~  408 (423)
                      .+..  ..+..+.. .+...|++++|.+.|++..+
T Consensus       366 ~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~  400 (472)
T 4g1t_A          366 TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK  400 (472)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            3322  12333332 23468999999999987543

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.50  E-value=1.5e-11  Score=119.31  Aligned_cols=217  Identities=10%  Similarity=-0.015  Sum_probs=171.2

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507          187 QNAENTLLAMKRRGFICDQVTLTVMVVMYSK-------AGNLK-------MAEETFEEIKLLGEPLDKRSYGSMVMAYVR  252 (423)
Q Consensus       187 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-------~g~~~-------~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  252 (423)
                      +.|..+|++..... +-+...|......+.+       .|+++       +|..+|++..+.-.+-+...|..++..+.+
T Consensus       255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~  333 (530)
T 2ooe_A          255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  333 (530)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            36778888887763 3377888888888876       79987       899999998863234468889999999999


Q ss_pred             cCChhHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHHHcCCHHHHH
Q 014507          253 AGMLDRGEVLLREMDAQEVYVG-SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLIN-AYQMAGQSQKAY  330 (423)
Q Consensus       253 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~-~~~~~g~~~~a~  330 (423)
                      .|++++|..+|+++.+.... + ...|..++..+.+.|+.++|.++|+...+.. +.+...|..... .+...|+.++|.
T Consensus       334 ~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~  411 (530)
T 2ooe_A          334 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAF  411 (530)
T ss_dssp             TTCHHHHHHHHHHHHHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred             cCCHHHHHHHHHHHhCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHH
Confidence            99999999999999985322 3 3589999999999999999999999998752 122333332222 234689999999


Q ss_pred             HHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCc--CHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          331 TAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLERDG-FMV--GKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       331 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      .+|+...+.  .| +...|..++..+.+.|+.++|..+|++....+ ..|  ....|...+....+.|+.+.+.++++++
T Consensus       412 ~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~  489 (530)
T 2ooe_A          412 KIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  489 (530)
T ss_dssp             HHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999998874  35 57889999999999999999999999999863 233  2557888888888999999999999877


Q ss_pred             cc
Q 014507          407 GL  408 (423)
Q Consensus       407 ~~  408 (423)
                      .+
T Consensus       490 ~~  491 (530)
T 2ooe_A          490 FT  491 (530)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.50  E-value=9e-13  Score=123.33  Aligned_cols=235  Identities=14%  Similarity=0.031  Sum_probs=129.7

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRR----GF-ICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL----G-EPLDKR  241 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g-~~~~~~  241 (423)
                      .|..+...+...|++++|...+++..+.    +. ......+..+...|...|++++|...|++..+.    + ......
T Consensus        88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  167 (411)
T 4a1s_A           88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGR  167 (411)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence            4555556666666666666666655432    11 112344555666666666666666666655442    1 011233


Q ss_pred             HHHHHHHHHHHcCC-----------------hhHHHHHHHHHHhC----CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHH
Q 014507          242 SYGSMVMAYVRAGM-----------------LDRGEVLLREMDAQ----EV-YVGSEVYKALLRGYSMNGNSEGAQRVFE  299 (423)
Q Consensus       242 ~~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~  299 (423)
                      ++..+...|...|+                 +++|...+++..+.    +. .....++..+...|...|++++|.+.++
T Consensus       168 ~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  247 (411)
T 4a1s_A          168 ALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQ  247 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            55566666666666                 66666666554331    11 1122355666666677777777777766


Q ss_pred             HHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507          300 AIQFAGI-TPD----ARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLE-PSDKCVALILSACEKENQLNRALEFLI  369 (423)
Q Consensus       300 ~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~  369 (423)
                      +..+... .++    ...+..+...|...|++++|.+.+++..+.    +.. ....++..+...+...|++++|...++
T Consensus       248 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  327 (411)
T 4a1s_A          248 ERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHN  327 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            6543210 011    225666666777777777777777665541    100 113456666666777777777777777


Q ss_pred             HHHHC----CC-CcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          370 DLERD----GF-MVGKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       370 ~m~~~----g~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      +..+.    +. .....++..+...|.+.|++++|.+.|++.
T Consensus       328 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  369 (411)
T 4a1s_A          328 RHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH  369 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            66542    11 111345666677777777777777777653

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.49  E-value=1.6e-11  Score=101.19  Aligned_cols=166  Identities=16%  Similarity=0.067  Sum_probs=86.8

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM  248 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  248 (423)
                      ++.+|..+...+.+.|++++|++.|++..+..+. +...|..+...|.+.|++++|...+....... +.+...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence            3445555555555555555555555555554322 45555555555555555555555555555443 224444555555


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507          249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK  328 (423)
Q Consensus       249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  328 (423)
                      .+...++++.+...+.+..+.... +...+..+...|.+.|++++|.+.|++..+.. +.+...|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            555555555555555555543322 34455555555555555555555555554432 2244455555555555555555


Q ss_pred             HHHHHHHHHH
Q 014507          329 AYTAFQNMRK  338 (423)
Q Consensus       329 a~~~~~~m~~  338 (423)
                      |.+.|++..+
T Consensus       160 A~~~~~~al~  169 (184)
T 3vtx_A          160 AVKYFKKALE  169 (184)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5555555544

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.47  E-value=3.1e-12  Score=119.18  Aligned_cols=267  Identities=13%  Similarity=0.036  Sum_probs=126.7

Q ss_pred             HHHHHhccCCCCCHHHHHHHHHHh--cCCCh-----hhHHHHHHHHHhcCCchHHHHHHHHHhhcc----c-CCCHHHHH
Q 014507          107 VKQIICVSPETGNLSDLLAAWVRF--MKPRR-----ADWLAVLKQLKLMEHPLYLQVAELALLEES----F-EANIRDYT  174 (423)
Q Consensus       107 ~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~-~~~~~~~~  174 (423)
                      +......+...|++++|+..|++.  ..|+.     ..+..+...+...|+++.|...+...+...    . +.....+.
T Consensus        12 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   91 (406)
T 3sf4_A           12 LALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASG   91 (406)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHH
Confidence            344444555566666666666654  22321     344455555555666666655555443221    1 11133455


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Q 014507          175 KIIHGYGKKMQIQNAENTLLAMKRRGFI-CD----QVTLTVMVVMYSKAGN--------------------LKMAEETFE  229 (423)
Q Consensus       175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~~  229 (423)
                      .+...+...|++++|...+++..+.... ++    ..++..+...|...|+                    +++|...++
T Consensus        92 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~  171 (406)
T 3sf4_A           92 NLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYE  171 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHH
Confidence            5555555566666666555555432000 01    2245555555555555                    555555555


Q ss_pred             HHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCC----HHHHHHHHHHHHhCCCHHHHHHHHH
Q 014507          230 EIKLL----GEPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEV-YVG----SEVYKALLRGYSMNGNSEGAQRVFE  299 (423)
Q Consensus       230 ~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~  299 (423)
                      +..+.    +..+ ...++..+...|...|++++|...+++..+... .++    ..++..+...|...|++++|...++
T Consensus       172 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  251 (406)
T 3sf4_A          172 ENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYK  251 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            54331    1001 123455555555555555555555555443210 001    2245555555555555555555555


Q ss_pred             HHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507          300 AIQFAGI-TPD----ARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLEPS-DKCVALILSACEKENQLNRALEFLI  369 (423)
Q Consensus       300 ~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~  369 (423)
                      +...... .++    ..++..+...|...|++++|.+.+++..+.    +-.+. ..++..+...+...|++++|...++
T Consensus       252 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  331 (406)
T 3sf4_A          252 KTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAE  331 (406)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5443210 011    334455555555555555555555554431    10111 3344455555555555555555555


Q ss_pred             HHHH
Q 014507          370 DLER  373 (423)
Q Consensus       370 ~m~~  373 (423)
                      +..+
T Consensus       332 ~al~  335 (406)
T 3sf4_A          332 KHLE  335 (406)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.47  E-value=2e-12  Score=120.40  Aligned_cols=272  Identities=13%  Similarity=-0.002  Sum_probs=187.0

Q ss_pred             ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-C
Q 014507          134 RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEAN----IRDYTKIIHGYGKKMQIQNAENTLLAMKRR----GFIC-D  204 (423)
Q Consensus       134 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~  204 (423)
                      ....+......+...|+++.|...+...++.... +    ...+..+...+...|++++|...+++..+.    +..| .
T Consensus         8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~   86 (406)
T 3sf4_A            8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE   86 (406)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence            3445556666777888888888888877776422 3    356777888888888888888888876443    2121 2


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------hhHH
Q 014507          205 QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE-PLD----KRSYGSMVMAYVRAGM--------------------LDRG  259 (423)
Q Consensus       205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~~~--------------------~~~a  259 (423)
                      ..++..+...|...|++++|...+++..+... .++    ..++..+...|...|+                    +++|
T Consensus        87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A  166 (406)
T 3sf4_A           87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA  166 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence            45677788888888888888888887765310 012    3467778888888888                    8888


Q ss_pred             HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHH
Q 014507          260 EVLLREMDAQ----EVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGI-TPD----ARMCALLINAYQMAGQSQKA  329 (423)
Q Consensus       260 ~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a  329 (423)
                      ...+++..+.    +..| ...++..+...|...|++++|...+++..+... .++    ..++..+...|...|++++|
T Consensus       167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  246 (406)
T 3sf4_A          167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA  246 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence            8888776542    2111 234677778888888888888888887654210 122    33677788888888888888


Q ss_pred             HHHHHHHHHC----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCc-CHHHHHHHHHHHHHcCCHHHH
Q 014507          330 YTAFQNMRKA----GLEPS-DKCVALILSACEKENQLNRALEFLIDLERD----GFMV-GKEASCTLAAWFKRLGVVEEV  399 (423)
Q Consensus       330 ~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~~~~~~~l~~~~~~~g~~~~A  399 (423)
                      ...+++..+.    +..+. ..++..+...+...|++++|...+++..+.    +..+ ...++..+...|.+.|++++|
T Consensus       247 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  326 (406)
T 3sf4_A          247 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQA  326 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence            8888877642    11111 456777888888888888888888877653    1111 155677788888888888888


Q ss_pred             HHHHHHh
Q 014507          400 EHVLREY  406 (423)
Q Consensus       400 ~~~~~~m  406 (423)
                      .+.+++.
T Consensus       327 ~~~~~~a  333 (406)
T 3sf4_A          327 MHFAEKH  333 (406)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8887764

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.47  E-value=1.4e-10  Score=118.71  Aligned_cols=310  Identities=11%  Similarity=0.023  Sum_probs=217.9

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHHHHHHhcCChhhhhhhHHHHHHHHhccCCCCCHHHHHH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLA  125 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~  125 (423)
                      ...|++++|..+  |++-.   . .+   ...+.++.  .-+.++.|.++.++..  +..+|..+..++.+.|++++|++
T Consensus      1060 i~lglyEEAf~I--YkKa~---~-~~---~A~~VLie--~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G~~kEAId 1126 (1630)
T 1xi4_A         1060 ISNELFEEAFAI--FRKFD---V-NT---SAVQVLIE--HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKGMVKEAID 1126 (1630)
T ss_pred             HhCCCHHHHHHH--HHHcC---C-HH---HHHHHHHH--HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCCCHHHHHH
Confidence            566777888777  66531   1 10   11122222  1234566665555443  34678888888888899999998


Q ss_pred             HHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 014507          126 AWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQ  205 (423)
Q Consensus       126 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~  205 (423)
                      .|.+.  -|...|..+..++.+.|+++++.+++....+..  ++....+.++.+|++.+++++.....    +   .++.
T Consensus      1127 sYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ 1195 (1630)
T 1xi4_A         1127 SYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNN 1195 (1630)
T ss_pred             HHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCH
Confidence            88774  556677888888888999988888887666554  33333334888888888888544432    2   2366


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014507          206 VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGY  285 (423)
Q Consensus       206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  285 (423)
                      ..|..+...|...|++++|..+|...         ..|..+..++.+.|+++.|.+.+++.      -+..+|..+-.+|
T Consensus      1196 ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A         1196 AHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence            67777888888899999999988874         37888888899999999988888876      2457888888888


Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507          286 SMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRAL  365 (423)
Q Consensus       286 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  365 (423)
                      ...|++..|......+     .-+...+..++..|.+.|.+++|..+++...... +-....|.-+...+++. ++++..
T Consensus      1261 ve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy-~peklm 1333 (1630)
T 1xi4_A         1261 VDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMR 1333 (1630)
T ss_pred             hhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC-CHHHHH
Confidence            8888888888776643     3466777899999999999999999997776432 22345666666666663 344444


Q ss_pred             HHHHHHHHC-CCCc------CHHHHHHHHHHHHHcCCHHHHHH
Q 014507          366 EFLIDLERD-GFMV------GKEASCTLAAWFKRLGVVEEVEH  401 (423)
Q Consensus       366 ~~~~~m~~~-g~~~------~~~~~~~l~~~~~~~g~~~~A~~  401 (423)
                      +.++...+. .+++      +...|..++-.|.+.|+++.|..
T Consensus      1334 Ehlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A         1334 EHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred             HHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence            444433333 3433      56779999999999999999983

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.47  E-value=2.5e-12  Score=116.14  Aligned_cols=268  Identities=13%  Similarity=-0.005  Sum_probs=188.6

Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhhcccCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHH
Q 014507          140 AVLKQLKLMEHPLYLQVAELALLEESFEAN----IRDYTKIIHGYGKKMQIQNAENTLLAMKRR----GFIC-DQVTLTV  210 (423)
Q Consensus       140 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~  210 (423)
                      .....+...|+++.|...++..++.... +    ...+..+...+...|++++|.+.+++..+.    +..| ...++..
T Consensus        10 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (338)
T 3ro2_A           10 LEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   88 (338)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            3344555667777776666666655322 2    356777788888888888888888876443    2111 2456777


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------hhHHHHHHHH
Q 014507          211 MVVMYSKAGNLKMAEETFEEIKLLGE-PLD----KRSYGSMVMAYVRAGM--------------------LDRGEVLLRE  265 (423)
Q Consensus       211 li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~  265 (423)
                      +...+...|++++|...+++..+... .++    ..++..+...+...|+                    +++|...+++
T Consensus        89 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~  168 (338)
T 3ro2_A           89 LGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEE  168 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHH
Confidence            88888888899988888888765310 112    3467778888888888                    8888888877


Q ss_pred             HHhC----CCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          266 MDAQ----EVY-VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA----GITP-DARMCALLINAYQMAGQSQKAYTAFQN  335 (423)
Q Consensus       266 m~~~----~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~  335 (423)
                      ..+.    +.. ....++..+...+...|++++|.+.+++..+.    +..+ ...++..+...+...|++++|.+.+++
T Consensus       169 a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  248 (338)
T 3ro2_A          169 NLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKK  248 (338)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            6542    111 12347788888899999999999999877642    1111 234788888899999999999999988


Q ss_pred             HHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC-cCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          336 MRKA----GLEP-SDKCVALILSACEKENQLNRALEFLIDLERD----GFM-VGKEASCTLAAWFKRLGVVEEVEHVLRE  405 (423)
Q Consensus       336 m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~  405 (423)
                      ..+.    +..+ ...++..+...+...|++++|...+++..+.    +-. ....++..+...|.+.|++++|.+.+++
T Consensus       249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  328 (338)
T 3ro2_A          249 TLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK  328 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            7652    1111 1457788888899999999999999987653    111 1245678899999999999999999988


Q ss_pred             hcc
Q 014507          406 YGL  408 (423)
Q Consensus       406 m~~  408 (423)
                      ..+
T Consensus       329 a~~  331 (338)
T 3ro2_A          329 HLE  331 (338)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            754

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.46  E-value=8.5e-13  Score=118.25  Aligned_cols=240  Identities=13%  Similarity=0.105  Sum_probs=166.7

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Q 014507          168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR-------GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL------  234 (423)
Q Consensus       168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------  234 (423)
                      .+..++..+...+...|++++|..+++++.+.       ........+..+...|...|++++|...+++..+.      
T Consensus        25 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  104 (311)
T 3nf1_A           25 ARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLG  104 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC
Confidence            34567888888999999999999999988763       22334567888889999999999999999888764      


Q ss_pred             CC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC------CC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--
Q 014507          235 GE-PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ------EV-YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA--  304 (423)
Q Consensus       235 g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--  304 (423)
                      +- +....++..+...|...|++++|...+++..+.      +. ......+..+...+...|++++|.+.+++....  
T Consensus       105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~  184 (311)
T 3nf1_A          105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ  184 (311)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            21 223467888889999999999999999988764      22 224567888889999999999999999987753  


Q ss_pred             ----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCH-------HHHHHHHHHHHHcCCHHHHH
Q 014507          305 ----GITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKA-------GLEPSD-------KCVALILSACEKENQLNRAL  365 (423)
Q Consensus       305 ----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~-------~~~~~li~~~~~~g~~~~a~  365 (423)
                          +..| ...++..+..+|...|++++|.+.++++.+.       ...+..       ..+..+...+...+.+.++.
T Consensus       185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  264 (311)
T 3nf1_A          185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG  264 (311)
T ss_dssp             HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred             HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence                2122 3457888899999999999999999988752       112221       12222233333445555666


Q ss_pred             HHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          366 EFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       366 ~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      ..++..... .+.+..++..+..+|.+.|++++|.++|++..+
T Consensus       265 ~~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          265 GWYKACKVD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             ----------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHhhcCCC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            666665543 234567788999999999999999999987643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.46  E-value=5.6e-12  Score=120.28  Aligned_cols=211  Identities=12%  Similarity=0.024  Sum_probs=120.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHH
Q 014507          186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNL-KMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLR  264 (423)
Q Consensus       186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~  264 (423)
                      ++++...++...... +.+...+..+...+...|++ ++|++.|++..+.. +-+..+|..+..+|...|++++|...|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            344444444443331 22455555566666666666 66666666655543 2245556666666666666666666666


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhC---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------CCHH
Q 014507          265 EMDAQEVYVGSEVYKALLRGYSMN---------GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMA--------GQSQ  327 (423)
Q Consensus       265 ~m~~~~~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~~  327 (423)
                      +..+..  |+...+..+...+...         |++++|.+.+++..+.. +.+...|..+..+|...        |+++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence            665543  4445556666666666         66666666666665542 22455666666666666        6666


Q ss_pred             HHHHHHHHHHHCCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          328 KAYTAFQNMRKAGLEP----SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVL  403 (423)
Q Consensus       328 ~a~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~  403 (423)
                      +|.+.|++..+.  .|    +...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|.+.+
T Consensus       239 ~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~  315 (474)
T 4abn_A          239 QALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESK  315 (474)
T ss_dssp             HHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            666666666653  23    45566666666666666666666666665532 224455666666666666666666544


Q ss_pred             H
Q 014507          404 R  404 (423)
Q Consensus       404 ~  404 (423)
                      .
T Consensus       316 ~  316 (474)
T 4abn_A          316 G  316 (474)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.46  E-value=1.2e-10  Score=104.59  Aligned_cols=217  Identities=11%  Similarity=0.005  Sum_probs=117.6

Q ss_pred             HHHHHHHHHhhcccCCCHHHHHHHHHHHHc-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507          153 YLQVAELALLEESFEANIRDYTKIIHGYGK-------KMQI-------QNAENTLLAMKRRGFICDQVTLTVMVVMYSKA  218 (423)
Q Consensus       153 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~-------~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  218 (423)
                      .|..+++..+... +.+...|..++..+..       .|++       ++|..+|++..+.-.+-+...|..++..+.+.
T Consensus        34 ~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~  112 (308)
T 2ond_A           34 RVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  112 (308)
T ss_dssp             HHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            3444555544432 3455556555555542       3554       66666666666521112445566666666666


Q ss_pred             CCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH-hCCCHHHHH
Q 014507          219 GNLKMAEETFEEIKLLGEPLD-KR-SYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS-MNGNSEGAQ  295 (423)
Q Consensus       219 g~~~~A~~~~~~m~~~g~~~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~g~~~~a~  295 (423)
                      |++++|..+|++..+.  .|+ .. .|..+...+.+.|++++|..+|++..+.... +...|........ ..|+.++|.
T Consensus       113 ~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          113 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             TCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             CCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence            6666666666666653  232 22 5666666666666666666666666654322 3333333322221 246666666


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          296 RVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG-LEP--SDKCVALILSACEKENQLNRALEFLIDLE  372 (423)
Q Consensus       296 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~  372 (423)
                      .+|+...+.. +-+...|..++..+.+.|++++|..+|++..+.. +.|  ....|..++....+.|+.+.|..+++++.
T Consensus       190 ~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~  268 (308)
T 2ond_A          190 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            6666655431 2245556666666666666666666666666542 333  24455555666666666666666666665


Q ss_pred             HC
Q 014507          373 RD  374 (423)
Q Consensus       373 ~~  374 (423)
                      +.
T Consensus       269 ~~  270 (308)
T 2ond_A          269 TA  270 (308)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.46  E-value=1.5e-11  Score=116.56  Aligned_cols=339  Identities=10%  Similarity=0.030  Sum_probs=183.3

Q ss_pred             hhhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccc-hHHH---HHHhcCChhhhhhhHHHHHHHHhccCCC---
Q 014507           45 WSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNIT-EEQK---QAISQFPRKMTKRCKAFVKQIICVSPET---  117 (423)
Q Consensus        45 ~~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~-~~~~---~~a~~~~~~m~~~~~~~~~~ll~~~~~~---  117 (423)
                      ..++|++++|+.+  |++..+.|. +    ..+..+...|. .+..   +.|..+|++..+.+...+..+-..+...   
T Consensus        13 ~~~~g~~~~A~~~--~~~aa~~g~-~----~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~   85 (452)
T 3e4b_A           13 ALKRGDTVTAQQN--YQQLAELGY-S----EAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGA   85 (452)
T ss_dssp             HHHHHHHHHHHHH--HHHHHHHTC-C----TGGGTCC----------------------------CHHHHHHHHHTC--C
T ss_pred             HHhCCCHHHHHHH--HHHHHHCCC-H----HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCC
Confidence            3788999999999  998877663 2    23344555554 3444   6888888877666666666666633333   


Q ss_pred             --CCHHHHHHHHHHhcCCC-hhhHHHHHHHHHhcCCchHH---HHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHH
Q 014507          118 --GNLSDLLAAWVRFMKPR-RADWLAVLKQLKLMEHPLYL---QVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAEN  191 (423)
Q Consensus       118 --g~~~~a~~~~~~~~~p~-~~~~~~ll~~~~~~~~~~~a---~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~  191 (423)
                        +++++|++.|.+...++ ...+..|...+...+....+   ...+......|   +...+..+...|...+.++++..
T Consensus        86 ~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~  162 (452)
T 3e4b_A           86 TEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLD  162 (452)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHH
T ss_pred             CCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHH
Confidence              38899999999875443 34666677777665543332   33333233233   33455556666666664444333


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CChhHHHHHHH
Q 014507          192 TLLAMKRRGFICDQVTLTVMVVMYSKAG---NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA----GMLDRGEVLLR  264 (423)
Q Consensus       192 ~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~----~~~~~a~~~~~  264 (423)
                      ....+.+.-...+...+..+...|...|   +.++|++.|++..+.| .++...+..|...|...    +++++|...|+
T Consensus       163 ~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~  241 (452)
T 3e4b_A          163 DVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLE  241 (452)
T ss_dssp             HHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHH
Confidence            3222222211113336666777777777   6777777777777766 44555555566655443    56777777777


Q ss_pred             HHHhCCCCCCHHHHHHHHHH-H--HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHH
Q 014507          265 EMDAQEVYVGSEVYKALLRG-Y--SMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAG-----QSQKAYTAFQNM  336 (423)
Q Consensus       265 ~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m  336 (423)
                      +.. .|   +...+..|... +  ...++.++|.+.|++..+.|   +...+..+...|. .|     ++++|.++|++.
T Consensus       242 ~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A  313 (452)
T 3e4b_A          242 KIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA  313 (452)
T ss_dssp             HHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred             HHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence            766 22   33455555554 3  45677777777777776654   5556666666665 44     777777777766


Q ss_pred             HHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHH----cCCHHHHHHHHHHhcc
Q 014507          337 RKAGLEPSDKCVALILSACEK----ENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKR----LGVVEEVEHVLREYGL  408 (423)
Q Consensus       337 ~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~  408 (423)
                      . .|   +...+..|...|..    ..++++|..+|++..+.|.   ......|..+|..    ..+.++|..+|+.-.+
T Consensus       314 a-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~  386 (452)
T 3e4b_A          314 V-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKA  386 (452)
T ss_dssp             T-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHT
T ss_pred             h-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence            5 22   44555555555554    2367777777777766553   2233445555543    3466666666665544


Q ss_pred             c
Q 014507          409 R  409 (423)
Q Consensus       409 ~  409 (423)
                      .
T Consensus       387 ~  387 (452)
T 3e4b_A          387 Q  387 (452)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.46  E-value=4.1e-11  Score=98.66  Aligned_cols=167  Identities=14%  Similarity=0.095  Sum_probs=131.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR  283 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  283 (423)
                      +...|..+...|.+.|++++|++.|++..+.. +-+..++..+..+|.+.|++++|...+......... +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            56778888888888888888888888888764 446778888888888888888888888888776544 5667777778


Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507          284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNR  363 (423)
Q Consensus       284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  363 (423)
                      .+...++++.|...+++..... +.+...+..+..+|.+.|++++|.+.|++..+.. +-+...+..+...+.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            8888888888888888877643 3367778888888888888888888888887743 2356778888888888888888


Q ss_pred             HHHHHHHHHHC
Q 014507          364 ALEFLIDLERD  374 (423)
Q Consensus       364 a~~~~~~m~~~  374 (423)
                      |.+.|++..+.
T Consensus       160 A~~~~~~al~~  170 (184)
T 3vtx_A          160 AVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHHHHHT
T ss_pred             HHHHHHHHHhC
Confidence            88888887763

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.45  E-value=3.6e-12  Score=119.23  Aligned_cols=270  Identities=13%  Similarity=-0.001  Sum_probs=208.0

Q ss_pred             HHHHHHHhccCCCCCHHHHHHHHHHh--cCCCh-----hhHHHHHHHHHhcCCchHHHHHHHHHhhcc-----cCCCHHH
Q 014507          105 AFVKQIICVSPETGNLSDLLAAWVRF--MKPRR-----ADWLAVLKQLKLMEHPLYLQVAELALLEES-----FEANIRD  172 (423)
Q Consensus       105 ~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~-----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~  172 (423)
                      ..+..+...+...|++++|++.|++.  ..|+.     ..+..+...+...|+++.|...++..++..     .+.....
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            44556667788899999999999997  34443     467888889999999999988888776531     2334567


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 014507          173 YTKIIHGYGKKMQIQNAENTLLAMKRR----GF-ICDQVTLTVMVVMYSKAGN-----------------LKMAEETFEE  230 (423)
Q Consensus       173 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~-----------------~~~A~~~~~~  230 (423)
                      +..+...+...|++++|...+++..+.    +- .....++..+...|...|+                 +++|.+.+++
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~  208 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE  208 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence            888999999999999999999987654    11 1134578889999999999                 9999999988


Q ss_pred             HHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHH
Q 014507          231 IKLL----GEPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VG----SEVYKALLRGYSMNGNSEGAQRVFEA  300 (423)
Q Consensus       231 m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~  300 (423)
                      ..+.    +..+ ...++..+...|...|++++|...+++..+.... ++    ..++..+...|...|++++|.+.+++
T Consensus       209 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  288 (411)
T 4a1s_A          209 NLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKR  288 (411)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence            7542    1111 2357888999999999999999999988763211 12    34788899999999999999999988


Q ss_pred             HHHCCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          301 IQFAGI-TP----DARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLEP-SDKCVALILSACEKENQLNRALEFLID  370 (423)
Q Consensus       301 m~~~g~-~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~  370 (423)
                      ...... ..    ...++..+...|...|++++|.+.+++..+.    +..+ ...++..+...+...|++++|...+++
T Consensus       289 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~  368 (411)
T 4a1s_A          289 TLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQ  368 (411)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            765210 01    2567888999999999999999999988752    1111 145788889999999999999999999


Q ss_pred             HHHC
Q 014507          371 LERD  374 (423)
Q Consensus       371 m~~~  374 (423)
                      ..+.
T Consensus       369 al~~  372 (411)
T 4a1s_A          369 HLQL  372 (411)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.45  E-value=1.7e-10  Score=103.50  Aligned_cols=233  Identities=10%  Similarity=0.023  Sum_probs=181.6

Q ss_pred             HHHHHHHHhccCCC----CCH----HHHHHHHHHhc--CC-ChhhHHHHHHHHH-------hcCCc-------hHHHHHH
Q 014507          104 KAFVKQIICVSPET----GNL----SDLLAAWVRFM--KP-RRADWLAVLKQLK-------LMEHP-------LYLQVAE  158 (423)
Q Consensus       104 ~~~~~~ll~~~~~~----g~~----~~a~~~~~~~~--~p-~~~~~~~ll~~~~-------~~~~~-------~~a~~~~  158 (423)
                      ...|...+..-.+.    ++.    ++|+..|++.+  .| +...|......+.       +.|+.       ++|..++
T Consensus         8 ~~~W~~yi~~E~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~   87 (308)
T 2ond_A            8 VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIY   87 (308)
T ss_dssp             HHHHHHHHHHHHTCTTCCCCHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccCCchHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHH
Confidence            34566665543332    343    78889999873  34 4467777776665       35886       8888888


Q ss_pred             HHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 014507          159 LALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQV-TLTVMVVMYSKAGNLKMAEETFEEIKLLGEP  237 (423)
Q Consensus       159 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  237 (423)
                      +..++.-.+-+...|..++..+.+.|++++|.++|++..+.... +.. .|..+...+.+.|++++|..+|++..+.. +
T Consensus        88 ~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p  165 (308)
T 2ond_A           88 ERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-R  165 (308)
T ss_dssp             HHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-T
T ss_pred             HHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-C
Confidence            88877423456778999999999999999999999999986322 333 89999999999999999999999999864 3


Q ss_pred             CCHHHHHHHHHHHH-HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCC--CHHHH
Q 014507          238 LDKRSYGSMVMAYV-RAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG-ITP--DARMC  313 (423)
Q Consensus       238 ~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~  313 (423)
                      .+...|........ ..|++++|..+|++..+.... +...+..++..+.+.|++++|..+|++..... +.|  ....|
T Consensus       166 ~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~  244 (308)
T 2ond_A          166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIW  244 (308)
T ss_dssp             CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHH
T ss_pred             CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHH
Confidence            44555554433322 369999999999999876433 67899999999999999999999999999863 354  46789


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          314 ALLINAYQMAGQSQKAYTAFQNMRKA  339 (423)
Q Consensus       314 ~~li~~~~~~g~~~~a~~~~~~m~~~  339 (423)
                      ..++..+.+.|+.++|..+++++.+.
T Consensus       245 ~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          245 ARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999999999873

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.44  E-value=1.7e-11  Score=113.74  Aligned_cols=230  Identities=7%  Similarity=-0.080  Sum_probs=175.8

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CC-----CHHHHH
Q 014507          176 IIHGYGKKMQIQNAENTLLAMKRR----GFIC-DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE-PL-----DKRSYG  244 (423)
Q Consensus       176 li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~-----~~~~~~  244 (423)
                      ....+...|++++|...+++..+.    +-.+ ...++..+...|...|++++|...+++..+.-. .+     ...+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            556778899999999999998764    2111 346788899999999999999999999876311 11     235788


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 014507          245 SMVMAYVRAGMLDRGEVLLREMDAQ----EVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA----GI-TPDARMCA  314 (423)
Q Consensus       245 ~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~  314 (423)
                      .+...|...|++++|...+++..+.    +-.+ ...++..+...|...|++++|.+.+++..+.    +. +....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            8999999999999999999988753    2111 1347888999999999999999999988761    32 23467789


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCc-CHHHHHHH
Q 014507          315 LLINAYQMAGQSQKAYTAFQNMRKA----GLEPSDKCVALILSACEKENQ---LNRALEFLIDLERDGFMV-GKEASCTL  386 (423)
Q Consensus       315 ~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~-~~~~~~~l  386 (423)
                      .+..+|...|++++|.+.+++..+.    +-+.....+..+...+...|+   +++|..++++.   +..| ....+..+
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~l  345 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDV  345 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHH
Confidence            9999999999999999999988652    111123345667777888888   66666666654   3333 35567889


Q ss_pred             HHHHHHcCCHHHHHHHHHHhcc
Q 014507          387 AAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       387 ~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      ...|.+.|++++|.+.|++..+
T Consensus       346 a~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          346 AKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999987644

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.42  E-value=1.4e-11  Score=111.30  Aligned_cols=269  Identities=13%  Similarity=0.026  Sum_probs=203.8

Q ss_pred             HHHHHHhccCCCCCHHHHHHHHHHh--cCCC-----hhhHHHHHHHHHhcCCchHHHHHHHHHhhc----c-cCCCHHHH
Q 014507          106 FVKQIICVSPETGNLSDLLAAWVRF--MKPR-----RADWLAVLKQLKLMEHPLYLQVAELALLEE----S-FEANIRDY  173 (423)
Q Consensus       106 ~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~-----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~  173 (423)
                      .+......+...|++++|++.|++.  ..|+     ...+..+...+...|+++.|...+...++.    + .+.....+
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            3444555677889999999999997  3344     256778888999999999998888776543    1 12235678


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q 014507          174 TKIIHGYGKKMQIQNAENTLLAMKRRGF-ICD----QVTLTVMVVMYSKAGN--------------------LKMAEETF  228 (423)
Q Consensus       174 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~--------------------~~~A~~~~  228 (423)
                      ..+...+...|++++|...+++..+... .++    ..++..+...+...|+                    +++|...+
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~  166 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLY  166 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHH
Confidence            8889999999999999999998765411 112    3478888999999999                    99999999


Q ss_pred             HHHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC----C-CCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 014507          229 EEIKLL----GEPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE----V-YVGSEVYKALLRGYSMNGNSEGAQRVF  298 (423)
Q Consensus       229 ~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~----~-~p~~~~~~~li~~~~~~g~~~~a~~~~  298 (423)
                      ++..+.    +..+ ...++..+...+...|++++|...+++..+..    . .....++..+...+...|++++|...+
T Consensus       167 ~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  246 (338)
T 3ro2_A          167 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYY  246 (338)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            887542    1111 23478888899999999999999999886531    1 112347888899999999999999999


Q ss_pred             HHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          299 EAIQFAGI-TPD----ARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLEP-SDKCVALILSACEKENQLNRALEFL  368 (423)
Q Consensus       299 ~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~  368 (423)
                      ++...... .++    ..++..+...+...|++++|.+.+++..+.    +-.+ ...++..+...+...|++++|...+
T Consensus       247 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  326 (338)
T 3ro2_A          247 KKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFA  326 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence            98764210 112    567888899999999999999999988652    1111 1457788899999999999999999


Q ss_pred             HHHHHC
Q 014507          369 IDLERD  374 (423)
Q Consensus       369 ~~m~~~  374 (423)
                      ++..+.
T Consensus       327 ~~a~~~  332 (338)
T 3ro2_A          327 EKHLEI  332 (338)
T ss_dssp             HHHHHC
T ss_pred             HHHHHH
Confidence            998874

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.37  E-value=3.6e-11  Score=114.72  Aligned_cols=198  Identities=11%  Similarity=-0.025  Sum_probs=168.1

Q ss_pred             CCCHHHHHHHHHHHHccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014507          167 EANIRDYTKIIHGYGKKMQI-QNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS  245 (423)
Q Consensus       167 ~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~  245 (423)
                      +.+...+..+...+...|++ ++|++.|++..+.... +...|..+...|.+.|++++|...|++..+.  .|+...+..
T Consensus        99 ~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~  175 (474)
T 4abn_A           99 QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQN  175 (474)
T ss_dssp             CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHH
T ss_pred             chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHH
Confidence            45778888899999999999 9999999999887433 6889999999999999999999999999886  467788889


Q ss_pred             HHHHHHHc---------CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHHCCCC-
Q 014507          246 MVMAYVRA---------GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN--------GNSEGAQRVFEAIQFAGIT-  307 (423)
Q Consensus       246 li~~~~~~---------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~g~~-  307 (423)
                      +...+...         |++++|...|++..+.... +...|..+..+|...        |++++|.+.|++..+.. + 
T Consensus       176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~  253 (474)
T 4abn_A          176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RK  253 (474)
T ss_dssp             HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GG
T ss_pred             HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CC
Confidence            99999998         9999999999999886544 678899999999888        99999999999988752 2 


Q ss_pred             --CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          308 --PDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLID  370 (423)
Q Consensus       308 --p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  370 (423)
                        -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+...|++++|.+.+.+
T Consensus       254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~  317 (474)
T 4abn_A          254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK  317 (474)
T ss_dssp             GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred             cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence              378899999999999999999999999988743 22466788888888888888888875543

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.36  E-value=6.3e-11  Score=112.31  Aligned_cols=306  Identities=11%  Similarity=0.021  Sum_probs=203.5

Q ss_pred             hHHHHHHhcCChhhhh-hhHHHHHHHHhccCCCCCH---HHHHHHHHHhcCCChhhHHHHHHHHHhcC-----CchHHHH
Q 014507           86 EEQKQAISQFPRKMTK-RCKAFVKQIICVSPETGNL---SDLLAAWVRFMKPRRADWLAVLKQLKLME-----HPLYLQV  156 (423)
Q Consensus        86 ~~~~~~a~~~~~~m~~-~~~~~~~~ll~~~~~~g~~---~~a~~~~~~~~~p~~~~~~~ll~~~~~~~-----~~~~a~~  156 (423)
                      +++.+.|..+|++..+ .+...+..+-..|...|+.   ++|++.|.+....+...+..+...+...+     +.++|..
T Consensus        16 ~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~~~~~A~~   95 (452)
T 3e4b_A           16 RGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEAEHHEAES   95 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHTCCTGGGTCC----------------------------CHHHHHHHHHTC--CCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCcCHHHHHH
Confidence            4566888888887765 3555666777777778888   89999999986667777777777666655     6678888


Q ss_pred             HHHHHhhcccCCCHHHHHHHHHHHHccCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          157 AELALLEESFEANIRDYTKIIHGYGKKMQIQ---NAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL  233 (423)
Q Consensus       157 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  233 (423)
                      .++...+.|...   .+..+...|...+..+   ++.+.+......|   +...+..+...|...+.++++......+.+
T Consensus        96 ~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~  169 (452)
T 3e4b_A           96 LLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICK  169 (452)
T ss_dssp             HHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHH
T ss_pred             HHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHH
Confidence            888888766433   6666777777665543   3455555555555   345677788888888855554444333332


Q ss_pred             cCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC----CCHHHHHHHHHHHHHCCC
Q 014507          234 LGEPLDKRSYGSMVMAYVRAG---MLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN----GNSEGAQRVFEAIQFAGI  306 (423)
Q Consensus       234 ~g~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~  306 (423)
                      .....++..+..|...|...|   +.++|...|++..+.|.. +...+..+...|...    ++.++|.+.|+... .| 
T Consensus       170 ~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g-  246 (452)
T 3e4b_A          170 AALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG-  246 (452)
T ss_dssp             HHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG-
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC-
Confidence            222233348888999999999   999999999999998864 666667777777665    79999999999988 43 


Q ss_pred             CCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHHCCCCc
Q 014507          307 TPDARMCALLINA-Y--QMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN-----QLNRALEFLIDLERDGFMV  378 (423)
Q Consensus       307 ~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~g~~~  378 (423)
                        +...+..+... +  ...|++++|.++|++..+.|   +...+..+...|. .|     ++++|.++|++..    +-
T Consensus       247 --~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa----~g  316 (452)
T 3e4b_A          247 --YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV----GR  316 (452)
T ss_dssp             --STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT----TT
T ss_pred             --CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh----CC
Confidence              55566666665 3  46899999999999999877   5667777777776 55     9999999999877    34


Q ss_pred             CHHHHHHHHHHHHH----cCCHHHHHHHHHHhcccC
Q 014507          379 GKEASCTLAAWFKR----LGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       379 ~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~~  410 (423)
                      +...+..|...|..    ..++++|.+.|++-.+.+
T Consensus       317 ~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  352 (452)
T 3e4b_A          317 EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG  352 (452)
T ss_dssp             CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT
T ss_pred             CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC
Confidence            66777788888876    349999999999877654

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.35  E-value=2.8e-10  Score=105.29  Aligned_cols=290  Identities=9%  Similarity=-0.062  Sum_probs=198.3

Q ss_pred             CCCCCHHHHHHHHHHh------cCCCh--hhHHHHHHHHHh--cCCchHHH---------HHHHHHhhcccCCCH----H
Q 014507          115 PETGNLSDLLAAWVRF------MKPRR--ADWLAVLKQLKL--MEHPLYLQ---------VAELALLEESFEANI----R  171 (423)
Q Consensus       115 ~~~g~~~~a~~~~~~~------~~p~~--~~~~~ll~~~~~--~~~~~~a~---------~~~~~~~~~~~~~~~----~  171 (423)
                      ...+++++|.+++++.      .+.|.  ..|-.++..-..  .+......         ..+..+.....+.+.    .
T Consensus        23 i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~l~~~  102 (378)
T 3q15_A           23 IRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETPQKKLTGLLKYY  102 (378)
T ss_dssp             HHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGGGHHHHHHHHHH
T ss_pred             HHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhccCCCCccHHHHH
Confidence            3567889998888764      22333  333444432211  22222222         444443322111111    1


Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C---CC-CH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGF-IC----DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG--E---PL-DK  240 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~---~~-~~  240 (423)
                      .|......+...|++++|...|++..+... .+    ...++..+...|...|+++.|...+++..+..  .   .+ ..
T Consensus       103 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  182 (378)
T 3q15_A          103 SLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTI  182 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHH
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHH
Confidence            233445567789999999999999876411 12    24578889999999999999999999887531  1   11 24


Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCH
Q 014507          241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQ----EVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQF-----AGITPDA  310 (423)
Q Consensus       241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~  310 (423)
                      .+++.+...|...|++++|...+++..+.    +-.+ ...++..+...|...|++++|.+.+++...     .. +...
T Consensus       183 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~  261 (378)
T 3q15_A          183 QSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLP  261 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHH
Confidence            57888999999999999999999987653    2211 245788899999999999999999998876     32 2246


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC---CCC-HHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCc-CHHH
Q 014507          311 RMCALLINAYQMAGQSQKAYTAFQNMRKAGL---EPS-DKCVALILSACEKENQ---LNRALEFLIDLERDGFMV-GKEA  382 (423)
Q Consensus       311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~~-~~~~  382 (423)
                      .++..+..+|.+.|++++|.+.+++..+..-   .|. ...+..+...+...++   +.+|...+++   .+..+ ....
T Consensus       262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~  338 (378)
T 3q15_A          262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEAC  338 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHH
Confidence            7888899999999999999999999876311   222 3456666666677777   6666666665   33333 3456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          383 SCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       383 ~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      +..+...|.+.|++++|.+.|++..+
T Consensus       339 ~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          339 ARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77899999999999999999987643

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.35  E-value=2e-10  Score=94.09  Aligned_cols=163  Identities=15%  Similarity=0.116  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV  251 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  251 (423)
                      .|..+...+...|++++|...++++.+... .+...+..+...+...|++++|...+++..+.. +.+...+..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            444555566666666666666666555422 245556666666666666666666666665543 334555666666666


Q ss_pred             HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507          252 RAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYT  331 (423)
Q Consensus       252 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  331 (423)
                      ..|++++|...++++.+... .+...+..+...+...|++++|.+.+++..... +.+...+..+...+...|++++|.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            66666666666666555432 244555555555666666666666665555432 2244555555555555566666655


Q ss_pred             HHHHHHH
Q 014507          332 AFQNMRK  338 (423)
Q Consensus       332 ~~~~m~~  338 (423)
                      .+++..+
T Consensus       166 ~~~~~~~  172 (186)
T 3as5_A          166 HFKKANE  172 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5555543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=6.2e-12  Score=112.56  Aligned_cols=204  Identities=11%  Similarity=0.048  Sum_probs=120.0

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRR------GF-ICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL------G  235 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g  235 (423)
                      ....+..+...+...|++++|...+++..+.      +- +....++..+...|...|++++|...|++..+.      +
T Consensus        68 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  147 (311)
T 3nf1_A           68 VATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  147 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC
Confidence            3455666777777777777777777776543      11 223456677777777777777777777777653      2


Q ss_pred             CCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---
Q 014507          236 EPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ------EVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA---  304 (423)
Q Consensus       236 ~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---  304 (423)
                      ..| ...++..+...+...|++++|...++++.+.      +..| ...++..+...|...|++++|.+.++++...   
T Consensus       148 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  227 (311)
T 3nf1_A          148 DHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHE  227 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            112 2345677777777788888888877777653      1122 2446777777888888888888888776642   


Q ss_pred             ----CCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          305 ----GITPD-------ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       305 ----g~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                          ...+.       ...+..+...+...+.+.++...++...... ..+..++..+...|...|++++|.+.+++..+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          228 REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             HHHC------CCHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                11111       1222233333444555556666666555421 22356778888888888888888888887765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.34  E-value=2.4e-10  Score=93.63  Aligned_cols=163  Identities=12%  Similarity=0.107  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507          242 SYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQ  321 (423)
Q Consensus       242 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  321 (423)
                      .|..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus        10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   87 (186)
T 3as5_A           10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV   87 (186)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            4555556666666666666666666554322 45566666666666677777777666665542 235566666667777


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 014507          322 MAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEH  401 (423)
Q Consensus       322 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~  401 (423)
                      ..|++++|.+.++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.+.|++++|.+
T Consensus        88 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~  165 (186)
T 3as5_A           88 QVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP  165 (186)
T ss_dssp             HHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence            7777777777777766542 2345666666777777777777777777766642 3356667777777777777777777


Q ss_pred             HHHHhcc
Q 014507          402 VLREYGL  408 (423)
Q Consensus       402 ~~~~m~~  408 (423)
                      .+++..+
T Consensus       166 ~~~~~~~  172 (186)
T 3as5_A          166 HFKKANE  172 (186)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776644

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.32  E-value=9.7e-10  Score=101.29  Aligned_cols=290  Identities=11%  Similarity=-0.012  Sum_probs=165.6

Q ss_pred             hccCCCCCHHHHHHHHHHhc--CCCh------hhHHHHHHHHHhcCCchHHHHHHHHHhhcccC-CCH----HHHHHHHH
Q 014507          112 CVSPETGNLSDLLAAWVRFM--KPRR------ADWLAVLKQLKLMEHPLYLQVAELALLEESFE-ANI----RDYTKIIH  178 (423)
Q Consensus       112 ~~~~~~g~~~~a~~~~~~~~--~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~li~  178 (423)
                      ..+...|++++|.+.+++..  .|+.      .+++.+...+...|+++.|...+......... .+.    .++..+..
T Consensus        22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            34456788888888887752  1221      13444555666677777777766665543211 121    23455666


Q ss_pred             HHHccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----CHHHHHHHH
Q 014507          179 GYGKKMQIQNAENTLLAMKRR----GFI--C-DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPL----DKRSYGSMV  247 (423)
Q Consensus       179 ~~~~~~~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~----~~~~~~~li  247 (423)
                      .+...|++++|...+++..+.    +..  | ....+..+...+...|++++|...+++..+.....    ...++..+.
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la  181 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI  181 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence            677777777777777776543    221  2 23345556677777777777777777776532111    234566677


Q ss_pred             HHHHHcCChhHHHHHHHHHHhCCCCCC--HHHHH----HHHHHHHhCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHH
Q 014507          248 MAYVRAGMLDRGEVLLREMDAQEVYVG--SEVYK----ALLRGYSMNGNSEGAQRVFEAIQFAGITP---DARMCALLIN  318 (423)
Q Consensus       248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~  318 (423)
                      ..+...|++++|...+++.......++  .....    ..+..+...|++++|...++........+   ....+..+..
T Consensus       182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~  261 (373)
T 1hz4_A          182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR  261 (373)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence            777777777777777777654311111  11111    22334667777777777777765432111   1234556667


Q ss_pred             HHHHcCCHHHHHHHHHHHHH----CCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc
Q 014507          319 AYQMAGQSQKAYTAFQNMRK----AGLEPSD-KCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRL  393 (423)
Q Consensus       319 ~~~~~g~~~~a~~~~~~m~~----~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~  393 (423)
                      .+...|++++|.+.+++...    .|..++. ..+..+..++...|+.++|...+++.....  +.    .-.+..+...
T Consensus       262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~--~~----~g~~~~~~~~  335 (373)
T 1hz4_A          262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA--NR----TGFISHFVIE  335 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HH----HCCCHHHHTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh--cc----ccHHHHHHHc
Confidence            77777777777777776644    2222222 255555666777777777777777776641  10    1122334444


Q ss_pred             CCHHHHHHHHHHhccc
Q 014507          394 GVVEEVEHVLREYGLR  409 (423)
Q Consensus       394 g~~~~A~~~~~~m~~~  409 (423)
                      |  +....+++.+...
T Consensus       336 g--~~~~~ll~~~~~~  349 (373)
T 1hz4_A          336 G--EAMAQQLRQLIQL  349 (373)
T ss_dssp             H--HHHHHHHHHHHHT
T ss_pred             c--HHHHHHHHHHHhC
Confidence            4  5556666655443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.27  E-value=3.8e-10  Score=112.26  Aligned_cols=166  Identities=9%  Similarity=-0.033  Sum_probs=138.0

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM  248 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  248 (423)
                      +...|+.+...+.+.|++++|++.|++..+.... +...|..+...|.+.|++++|+..|++..+.. +-+..+|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            4577888899999999999999999998887433 67888889999999999999999999888864 335788888999


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507          249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK  328 (423)
Q Consensus       249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  328 (423)
                      +|.+.|++++|.+.|++..+.... +...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+..++...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence            999999999999999988886544 67788899999999999999999999888752 2267788888999999999998


Q ss_pred             HHHHHHHHHH
Q 014507          329 AYTAFQNMRK  338 (423)
Q Consensus       329 a~~~~~~m~~  338 (423)
                      |.+.+++..+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            8888877654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.26  E-value=8.1e-11  Score=103.50  Aligned_cols=227  Identities=11%  Similarity=0.062  Sum_probs=142.3

Q ss_pred             HccCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCC-CHHHHHHH
Q 014507          181 GKKMQIQNAENTLLAMKRR-------GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL------GEPL-DKRSYGSM  246 (423)
Q Consensus       181 ~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~~-~~~~~~~l  246 (423)
                      ...|++++|+..+++..+.       ..+....++..+...|...|++++|...|++..+.      +-.| ...++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            3456666666665555431       11223556777777888888888888888777653      2112 34567777


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhC------C-CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC------CCCC-CHHH
Q 014507          247 VMAYVRAGMLDRGEVLLREMDAQ------E-VYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA------GITP-DARM  312 (423)
Q Consensus       247 i~~~~~~~~~~~a~~~~~~m~~~------~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------g~~p-~~~~  312 (423)
                      ...|...|++++|...+++..+.      . .+....++..+...|...|++++|...+++..+.      +-.| ...+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            88888888888888888777653      1 1223567788888888888888888888877653      1122 3567


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHC-------CCCCCH-HHHHHHHHHHHHcCCHH------HHHHHHHHHHHCCCCc
Q 014507          313 CALLINAYQMAGQSQKAYTAFQNMRKA-------GLEPSD-KCVALILSACEKENQLN------RALEFLIDLERDGFMV  378 (423)
Q Consensus       313 ~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~-~~~~~li~~~~~~g~~~------~a~~~~~~m~~~g~~~  378 (423)
                      +..+..+|...|++++|.+.+++..+.       ...+.. ..+..+.......+...      .+...++.... ..+.
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~  250 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT  250 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence            888888999999999999999887652       122322 23333333333322222      22222221111 1123


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          379 GKEASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       379 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      ...++..+...|.+.|++++|.++|++..+
T Consensus       251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            456788899999999999999999987654

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.26  E-value=1.3e-09  Score=93.06  Aligned_cols=195  Identities=12%  Similarity=-0.027  Sum_probs=146.2

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014507          168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMV  247 (423)
Q Consensus       168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li  247 (423)
                      .|+..+......+...|++++|...|++..+....++...+..+...+...|++++|...|++..+.. +.+..+|..+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            45677788888888999999999999998887654677777778888999999999999999988764 33567788888


Q ss_pred             HHHHHcCChhHHHHHHHHHHhCCCCCCH-------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 014507          248 MAYVRAGMLDRGEVLLREMDAQEVYVGS-------EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD---ARMCALLI  317 (423)
Q Consensus       248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li  317 (423)
                      ..|...|++++|...+++..+.... +.       ..|..+...+...|++++|.+.|++..+.  .|+   ...|..+.
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            9999999999999999988875433 34       45777888888999999999999998875  454   45667777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          318 NAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       318 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      .+|...|     ...++++...+ ..+...|.....  ...+.+++|...+++..+.
T Consensus       161 ~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          161 VLFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence            7775544     34455555432 234445544433  3456688999999988874

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.25  E-value=5.7e-10  Score=111.01  Aligned_cols=165  Identities=12%  Similarity=0.078  Sum_probs=146.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR  283 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  283 (423)
                      +...|+.+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|...|++..+.... +...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            46789999999999999999999999999874 346789999999999999999999999999986544 6889999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHH
Q 014507          284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLN  362 (423)
Q Consensus       284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~  362 (423)
                      +|.+.|++++|++.|++..+.. +-+...|+.+..+|...|++++|.+.|++..+.  .|+ ...+..+...+...|+++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHH
Confidence            9999999999999999988753 336889999999999999999999999999884  564 788999999999999999


Q ss_pred             HHHHHHHHHHH
Q 014507          363 RALEFLIDLER  373 (423)
Q Consensus       363 ~a~~~~~~m~~  373 (423)
                      +|.+.++++.+
T Consensus       163 ~A~~~~~kal~  173 (723)
T 4gyw_A          163 DYDERMKKLVS  173 (723)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99998887754

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.23  E-value=4.5e-09  Score=96.78  Aligned_cols=269  Identities=13%  Similarity=-0.038  Sum_probs=175.6

Q ss_pred             HHHHHHHHhcCCchHHHHHHHHHhhcccCCCHH----HHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 014507          139 LAVLKQLKLMEHPLYLQVAELALLEESFEANIR----DYTKIIHGYGKKMQIQNAENTLLAMKRRGFI-CD----QVTLT  209 (423)
Q Consensus       139 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~  209 (423)
                      ......+...|+++.+...+...+......+..    .++.+...+...|++++|.+.+++..+.... .+    ..++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            333445566888888888777766654333322    4566667788888888888888877543110 12    23356


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc----CCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC----CCHHHH
Q 014507          210 VMVVMYSKAGNLKMAEETFEEIKLL----GEP--LD-KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY----VGSEVY  278 (423)
Q Consensus       210 ~li~~~~~~g~~~~A~~~~~~m~~~----g~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~  278 (423)
                      .+...+...|++++|...+++..+.    +..  |. ...+..+...+...|++++|...+++..+....    ....++
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  177 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCL  177 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHH
Confidence            6777788888888888888877652    221  22 345666777888888888888888887653221    123567


Q ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-C-HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCCC---CHHHHH
Q 014507          279 KALLRGYSMNGNSEGAQRVFEAIQFAGITP-D-ARMCA----LLINAYQMAGQSQKAYTAFQNMRKAGLEP---SDKCVA  349 (423)
Q Consensus       279 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~-~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~  349 (423)
                      ..+...+...|++++|...+++.....-.+ + .....    ..+..+...|++++|...+++.......+   ....+.
T Consensus       178 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~  257 (373)
T 1hz4_A          178 AMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWR  257 (373)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHH
Confidence            777888888888888888888776421111 1 11111    23344778888888888888776532111   133566


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHC----CCCcCH-HHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          350 LILSACEKENQLNRALEFLIDLERD----GFMVGK-EASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       350 ~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      .+...+...|++++|...+++....    |..++. ..+..+..++...|+.++|.+.+++..
T Consensus       258 ~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al  320 (373)
T 1hz4_A          258 NIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  320 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            7777888888888888888876543    322333 366677788888888888888887653

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.23  E-value=3.8e-09  Score=90.07  Aligned_cols=194  Identities=13%  Similarity=-0.020  Sum_probs=152.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR  283 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  283 (423)
                      |...+......+...|++++|...|++..+...+++...+..+..++...|++++|...+++..+.... +...+..+..
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence            667888899999999999999999999998764378888888999999999999999999999987544 6778999999


Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 014507          284 GYSMNGNSEGAQRVFEAIQFAGITPDA-------RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS---DKCVALILS  353 (423)
Q Consensus       284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~  353 (423)
                      .|...|++++|...+++..+.. +.+.       ..|..+...+...|++++|.+.|++..+.  .|+   ...+..+..
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~  161 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV  161 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence            9999999999999999988753 2244       45788888899999999999999999874  565   456666776


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          354 ACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       354 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      .+...|     ...++++...+ ..+...|.....  ...|.+++|...|++..+.
T Consensus       162 ~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          162 LFYNNG-----ADVLRKATPLA-SSNKEKYASEKA--KADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             HHHHHH-----HHHHHHHGGGT-TTCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHhcc-cCCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence            765443     44556665543 234555554443  3467789999999887653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.22  E-value=1.2e-10  Score=102.36  Aligned_cols=204  Identities=12%  Similarity=0.087  Sum_probs=121.7

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRR------GF-ICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL------G  235 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g  235 (423)
                      ...++..+...+...|++++|...+++..+.      +- +....++..+...|...|++++|...|++..+.      .
T Consensus        42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~  121 (283)
T 3edt_B           42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK  121 (283)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence            4556677777777777888777777776644      11 123456777777777788888887777777653      1


Q ss_pred             C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC------CCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---
Q 014507          236 E-PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ------EVYV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA---  304 (423)
Q Consensus       236 ~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---  304 (423)
                      . +....++..+...|...|++++|...+++..+.      +..| ...++..+...|...|++++|...+++..+.   
T Consensus       122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~  201 (283)
T 3edt_B          122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHE  201 (283)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            1 123456777777777888888888887777654      1122 3456777777888888888888888776642   


Q ss_pred             ----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          305 ----GITP-DARMCALLINAYQMAGQSQKAYTAFQNMRK----AG-LEP-SDKCVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       305 ----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~-~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                          ...+ ....|..+...+...+....+.. +.....    .+ ..| ...++..+...+...|++++|..++++..+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          202 KEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence                1112 22233333333333222222221 111111    11 112 245677778888888888888888887765

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.19  E-value=1.4e-09  Score=100.65  Aligned_cols=227  Identities=8%  Similarity=-0.047  Sum_probs=153.1

Q ss_pred             HHHhcCCchHHHHHHHHHhhc----ccCC-CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--CC----CCHHHHHHHH
Q 014507          144 QLKLMEHPLYLQVAELALLEE----SFEA-NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRG--FI----CDQVTLTVMV  212 (423)
Q Consensus       144 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~----p~~~~~~~li  212 (423)
                      .+...|+++.|...+....+.    +-.+ ...++..+...+...|++++|...+++..+.-  ..    ....+++.+.
T Consensus       112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  191 (383)
T 3ulq_A          112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA  191 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence            344556666665555555432    1111 23567777888888888888888888776531  11    1235677788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 014507          213 VMYSKAGNLKMAEETFEEIKLLGE-PLD----KRSYGSMVMAYVRAGMLDRGEVLLREMDA-----QEVYVGSEVYKALL  282 (423)
Q Consensus       213 ~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~li  282 (423)
                      ..|...|++++|...|++..+... .++    ..++..+...|...|++++|...+++..+     ...+....++..+.
T Consensus       192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  271 (383)
T 3ulq_A          192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT  271 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence            888888888888888888765310 111    24677888888888999999888888776     32133466788888


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 014507          283 RGYSMNGNSEGAQRVFEAIQFA----GITPDARMCALLINAYQMAGQ---SQKAYTAFQNMRKAGLEPS-DKCVALILSA  354 (423)
Q Consensus       283 ~~~~~~g~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~  354 (423)
                      ..|.+.|++++|...+++....    +-......+..+...+...|+   +++|+.++++.   +..|+ ...+..+...
T Consensus       272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~  348 (383)
T 3ulq_A          272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKY  348 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence            8888999999998888876542    111122335667777778888   66666666655   33333 4467778888


Q ss_pred             HHHcCCHHHHHHHHHHHHH
Q 014507          355 CEKENQLNRALEFLIDLER  373 (423)
Q Consensus       355 ~~~~g~~~~a~~~~~~m~~  373 (423)
                      |...|++++|...+++..+
T Consensus       349 y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          349 YHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            8899999999998887764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.13  E-value=2.6e-08  Score=87.52  Aligned_cols=242  Identities=10%  Similarity=-0.021  Sum_probs=164.2

Q ss_pred             CCCCHHHHHHHHHHhcCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHH
Q 014507          116 ETGNLSDLLAAWVRFMKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLL  194 (423)
Q Consensus       116 ~~g~~~~a~~~~~~~~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  194 (423)
                      -.|++..+++-..+.-.-+. ..-.-+.+++...|+....         ....|....+..+...+ ..+    |...|+
T Consensus        25 y~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~   90 (310)
T 3mv2_B           25 YTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELE   90 (310)
T ss_dssp             TTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHH
T ss_pred             HhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHH
Confidence            35777777774443311111 2222344677777776642         12334444444444443 322    777888


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 014507          195 AMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE-PLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYV  273 (423)
Q Consensus       195 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p  273 (423)
                      +..+.+ .++..++..+..++...|++++|++++.+....|. .-+...+..++..+.+.|+.+.|.+.+++|.+.  .|
T Consensus        91 ~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~  167 (310)
T 3mv2_B           91 NLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IE  167 (310)
T ss_dssp             HTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SC
T ss_pred             HHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cc
Confidence            777665 45666677888999999999999999999877653 236678889999999999999999999999875  34


Q ss_pred             -----CHHHHHHHHHH--HHh--CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----
Q 014507          274 -----GSEVYKALLRG--YSM--NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA-----  339 (423)
Q Consensus       274 -----~~~~~~~li~~--~~~--~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----  339 (423)
                           +..+...|..+  ...  .++..+|..+|+++...  .|+..+-..++.++.+.|++++|.+.++.+.+.     
T Consensus       168 d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~  245 (310)
T 3mv2_B          168 DTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVE  245 (310)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTT
T ss_pred             cccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence                 34555666655  222  34899999999998765  455444445555889999999999999876542     


Q ss_pred             CC---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCH
Q 014507          340 GL---EP-SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGK  380 (423)
Q Consensus       340 ~~---~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~  380 (423)
                      +.   .| |..++..+|......|+  .|.++++++.+.  .|+.
T Consensus       246 ~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~--~P~h  286 (310)
T 3mv2_B          246 QKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL--DHEH  286 (310)
T ss_dssp             TCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT--TCCC
T ss_pred             ccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh--CCCC
Confidence            10   24 46677677777777786  888999999885  4544

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.12  E-value=1.1e-08  Score=94.58  Aligned_cols=226  Identities=12%  Similarity=0.001  Sum_probs=158.9

Q ss_pred             HHHhcCCchHHHHHHHHHhhccc-CC----CHHHHHHHHHHHHccCCHHHHHHHHHHHHHc----C-CCC-CHHHHHHHH
Q 014507          144 QLKLMEHPLYLQVAELALLEESF-EA----NIRDYTKIIHGYGKKMQIQNAENTLLAMKRR----G-FIC-DQVTLTVMV  212 (423)
Q Consensus       144 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g-~~p-~~~~~~~li  212 (423)
                      .+...|+.+.|...+....+... .+    ...++..+...+...|+++.|...+++..+.    + ..+ ...+++.+.
T Consensus       110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg  189 (378)
T 3q15_A          110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA  189 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence            34556777777766666554311 12    2456777888888899999998888887653    1 111 245677888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHh-----CCCCCCHHHHHHHH
Q 014507          213 VMYSKAGNLKMAEETFEEIKLL----GEPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDA-----QEVYVGSEVYKALL  282 (423)
Q Consensus       213 ~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~~p~~~~~~~li  282 (423)
                      ..|...|++++|.+.|++..+.    +..+ ...++..+...|...|++++|...+++..+     .... ...++..+.
T Consensus       190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la  268 (378)
T 3q15_A          190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLFGLS  268 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHHHHH
Confidence            8899999999999998887652    1111 234677888889999999999999988876     4333 367888888


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHH
Q 014507          283 RGYSMNGNSEGAQRVFEAIQFAG----ITPDARMCALLINAYQMAGQ---SQKAYTAFQNMRKAGLEPS-DKCVALILSA  354 (423)
Q Consensus       283 ~~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~  354 (423)
                      ..+.+.|++++|...+++..+..    -+.....+..+-..+...|+   +.+|+..+++   .+..|+ ...+..+...
T Consensus       269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~  345 (378)
T 3q15_A          269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV  345 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence            99999999999999998877631    12223455666666777777   6677776665   233333 3466778888


Q ss_pred             HHHcCCHHHHHHHHHHHHH
Q 014507          355 CEKENQLNRALEFLIDLER  373 (423)
Q Consensus       355 ~~~~g~~~~a~~~~~~m~~  373 (423)
                      |...|++++|...+++..+
T Consensus       346 y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          346 FESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHH
Confidence            8999999999999988754

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.10  E-value=1e-08  Score=78.79  Aligned_cols=127  Identities=19%  Similarity=0.190  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014507          208 LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM  287 (423)
Q Consensus       208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  287 (423)
                      |..+...+...|++++|..+|+++.+.+ +.+...+..+...+...|++++|...++++.+.+.. +...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHH
Confidence            3334444444444444444444444432 223344444444444444444444444444433221 33344444444445


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          288 NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMR  337 (423)
Q Consensus       288 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  337 (423)
                      .|++++|.+.++.+.... +.+...+..+...+...|++++|.+.++++.
T Consensus        82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            555555555554444331 1234444444455555555555555554444

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.09  E-value=1.3e-08  Score=78.25  Aligned_cols=130  Identities=15%  Similarity=0.124  Sum_probs=105.8

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV  251 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  251 (423)
                      .|..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|..+|+++.+.+ +.+...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence            4667778888889999999999888776433 67778888888888899999999998888765 446778888888888


Q ss_pred             HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507          252 RAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA  304 (423)
Q Consensus       252 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  304 (423)
                      ..|++++|.+.++++.+.... +...+..+...+.+.|++++|...++++...
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            999999999999888876433 5678888888899999999999999887754

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.08  E-value=7.5e-09  Score=91.96  Aligned_cols=206  Identities=10%  Similarity=0.019  Sum_probs=118.7

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChhHH
Q 014507          185 QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL----GEPLD-KRSYGSMVMAYVRAGMLDRG  259 (423)
Q Consensus       185 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~~~~~~a  259 (423)
                      ++++|...|++.               ...|...|++++|...|.+..+.    |-.++ ..+|+.+..+|.+.|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            366666666554               23455667777777776665442    21111 34666677777777777777


Q ss_pred             HHHHHHHHhC----CCCC-CHHHHHHHHHHHHhC-CCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHHcCCHHH
Q 014507          260 EVLLREMDAQ----EVYV-GSEVYKALLRGYSMN-GNSEGAQRVFEAIQFAGI-TPD----ARMCALLINAYQMAGQSQK  328 (423)
Q Consensus       260 ~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~  328 (423)
                      ...+++..+.    |-.. -..+++.+...|... |++++|...|++..+... ..+    ..+++.+...+...|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            7777666542    1110 134666677777775 777777777776654210 001    3456677777777777777


Q ss_pred             HHHHHHHHHHCCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC------HHHHHHHHHHHH--HcC
Q 014507          329 AYTAFQNMRKAGLEPSD------KCVALILSACEKENQLNRALEFLIDLERDGFMVG------KEASCTLAAWFK--RLG  394 (423)
Q Consensus       329 a~~~~~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~------~~~~~~l~~~~~--~~g  394 (423)
                      |.+.|++..+.......      ..|..+..++...|++++|...+++..+.  .|+      ...+..++.++.  ..+
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~  254 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSE  254 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTT
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHH
Confidence            77777777663221111      14566666677777777777777776552  222      112344455553  345


Q ss_pred             CHHHHHHHHHHhc
Q 014507          395 VVEEVEHVLREYG  407 (423)
Q Consensus       395 ~~~~A~~~~~~m~  407 (423)
                      ++++|.+.|+++.
T Consensus       255 ~~~~A~~~~~~~~  267 (292)
T 1qqe_A          255 QLSEHCKEFDNFM  267 (292)
T ss_dssp             THHHHHHHHTTSS
T ss_pred             HHHHHHHHhccCC
Confidence            6777777776553

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.07  E-value=7.7e-09  Score=91.90  Aligned_cols=197  Identities=9%  Similarity=0.002  Sum_probs=141.3

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHH
Q 014507          174 TKIIHGYGKKMQIQNAENTLLAMKRR----GFICD-QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE---PL--DKRSY  243 (423)
Q Consensus       174 ~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~---~~--~~~~~  243 (423)
                      ......|...|++++|...|++..+.    |-.++ ..+|+.+...|.+.|++++|...|++..+...   .+  -..++
T Consensus        41 ~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~  120 (292)
T 1qqe_A           41 VQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFK  120 (292)
T ss_dssp             HHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            33456778889999999999887653    32222 46788999999999999999999988765310   11  13578


Q ss_pred             HHHHHHHHHc-CChhHHHHHHHHHHhCCCC----CC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH------H
Q 014507          244 GSMVMAYVRA-GMLDRGEVLLREMDAQEVY----VG-SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDA------R  311 (423)
Q Consensus       244 ~~li~~~~~~-~~~~~a~~~~~~m~~~~~~----p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~  311 (423)
                      +.+...|... |++++|...|++..+....    +. ..++..+...+.+.|++++|...|++..........      .
T Consensus       121 ~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  200 (292)
T 1qqe_A          121 FELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKD  200 (292)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHH
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            8899999996 9999999999988763211    11 357888999999999999999999998875322211      2


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 014507          312 MCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSD------KCVALILSACE--KENQLNRALEFLIDLE  372 (423)
Q Consensus       312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~li~~~~--~~g~~~~a~~~~~~m~  372 (423)
                      .|..+..++...|++++|...|++..+  +.|+.      ..+..++.++.  ..+++++|...|+.+.
T Consensus       201 ~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          201 YFLKKGLCQLAATDAVAAARTLQEGQS--EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHGGGC--C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            577788889999999999999999876  33432      13445556654  3456777777776554

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.02  E-value=2.5e-08  Score=83.70  Aligned_cols=131  Identities=15%  Similarity=0.146  Sum_probs=57.2

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 014507          246 MVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ  325 (423)
Q Consensus       246 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  325 (423)
                      +..+|.+.|++++|...|++..+.... +...+..+...+...|++++|...|++..+.. +.+...|..+..+|...|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhH
Confidence            444455555555555555555543322 34455555555555555555555555554431 1234445555444443332


Q ss_pred             --HHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHH
Q 014507          326 --SQKAYTAFQNMRKAGLEPSD--KCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASC  384 (423)
Q Consensus       326 --~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~  384 (423)
                        .+.+...++...    .|+.  ..+.....++...|++++|...|++..+  ..|+.....
T Consensus       138 ~~~~~~~~~~~~~~----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~  194 (208)
T 3urz_A          138 QEKKKLETDYKKLS----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQK  194 (208)
T ss_dssp             HHHHHHHHHHC-------CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHH
T ss_pred             HHHHHHHHHHHHHh----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHH
Confidence              222333333322    2222  1222233334445555555555555554  234444333

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.99  E-value=3.6e-08  Score=85.88  Aligned_cols=210  Identities=12%  Similarity=0.023  Sum_probs=116.9

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C-CCHHH
Q 014507          168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICD---QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGE-P-LDKRS  242 (423)
Q Consensus       168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~-~~~~~  242 (423)
                      .+...+-.....+.+.|++++|...|+++.+.... +   ...+..+..+|.+.|++++|...|++..+... . .....
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a   91 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA   91 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence            34555666677777788888888888887776322 2   55677777778888888888888888777521 1 12345


Q ss_pred             HHHHHHHHHH--------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507          243 YGSMVMAYVR--------AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCA  314 (423)
Q Consensus       243 ~~~li~~~~~--------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~  314 (423)
                      +..+..++..        .|++++|...|++..+.... +......+              ..+......    -...+.
T Consensus        92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~--------------~~~~~~~~~----~~~~~~  152 (261)
T 3qky_A           92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDAT--------------QKIRELRAK----LARKQY  152 (261)
T ss_dssp             HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHH--------------HHHHHHHHH----HHHHHH
T ss_pred             HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHH--------------HHHHHHHHH----HHHHHH
Confidence            6666777777        77777777777777764322 11111111              000000000    011134


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCC-CC-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCcC---
Q 014507          315 LLINAYQMAGQSQKAYTAFQNMRKAGL-EP-SDKCVALILSACEKE----------NQLNRALEFLIDLERDGFMVG---  379 (423)
Q Consensus       315 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~~~---  379 (423)
                      .+...|...|++++|...|++..+..- .+ ....+..+..++...          |++++|...++++.+..  |+   
T Consensus       153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~  230 (261)
T 3qky_A          153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF--PDSPL  230 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC--TTCTH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC--CCChH
Confidence            455566666666666666666655211 11 133455555555544          66666666666666531  22   


Q ss_pred             -HHHHHHHHHHHHHcCCHHHH
Q 014507          380 -KEASCTLAAWFKRLGVVEEV  399 (423)
Q Consensus       380 -~~~~~~l~~~~~~~g~~~~A  399 (423)
                       ......+-..+.+.|+++++
T Consensus       231 ~~~a~~~l~~~~~~~~~~~~~  251 (261)
T 3qky_A          231 LRTAEELYTRARQRLTELEGD  251 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHhhhh
Confidence             23344444444455554443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.98  E-value=3.1e-08  Score=86.27  Aligned_cols=186  Identities=8%  Similarity=-0.076  Sum_probs=116.7

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCC-CC-CHHHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD---KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEV-YV-GSEVY  278 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p-~~~~~  278 (423)
                      +...+-.+...+.+.|++++|...|+++.+.. +.+   ...+..+..+|.+.|++++|...|++..+... .| ....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            44555566666777777777777777776653 112   45666677777777777777777777766422 11 23455


Q ss_pred             HHHHHHHHh--------CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507          279 KALLRGYSM--------NGNSEGAQRVFEAIQFAGITPDA-RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA  349 (423)
Q Consensus       279 ~~li~~~~~--------~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  349 (423)
                      ..+..++..        .|++++|...|+++.+.  .|+. .....+..              +......    ....+.
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~--------------~~~~~~~----~~~~~~  152 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVDDATQK--------------IRELRAK----LARKQY  152 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHHHHHHH--------------HHHHHHH----HHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHHHHHHH--------------HHHHHHH----HHHHHH
Confidence            556666666        67777777777766654  2321 11111110              1110000    011246


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHCCCC-c-CHHHHHHHHHHHHHc----------CCHHHHHHHHHHhcccC
Q 014507          350 LILSACEKENQLNRALEFLIDLERDGFM-V-GKEASCTLAAWFKRL----------GVVEEVEHVLREYGLRE  410 (423)
Q Consensus       350 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-~-~~~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~~  410 (423)
                      .+...+...|++++|...++++.+.... + ....+..+..+|.+.          |++++|...|+++.+..
T Consensus       153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~  225 (261)
T 3qky_A          153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF  225 (261)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence            6788899999999999999999875211 1 356778888888876          99999999999886543

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.98  E-value=5e-08  Score=81.89  Aligned_cols=172  Identities=11%  Similarity=0.012  Sum_probs=123.4

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTV----------------MVVMYSKAGNLKMAEETFEEIKL  233 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~----------------li~~~~~~g~~~~A~~~~~~m~~  233 (423)
                      ...+-.....+...|++++|...|++..+.... +...|..                +...|.+.|++++|...|++..+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~   82 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ   82 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            344444556677889999999999998887322 4455666                88888899999999999998888


Q ss_pred             cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC--HHHHHHHHHHHHHCCCCCCH-
Q 014507          234 LGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN--SEGAQRVFEAIQFAGITPDA-  310 (423)
Q Consensus       234 ~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~g~~p~~-  310 (423)
                      .. +-+...+..+..++...|++++|...|++..+.... +..++..+...|...|+  .+.+...++...    .|+. 
T Consensus        83 ~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~----~~~~~  156 (208)
T 3urz_A           83 KA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAEQEKKKLETDYKKLS----SPTKM  156 (208)
T ss_dssp             HC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CCCHH
T ss_pred             HC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh----CCCch
Confidence            65 446788888999999999999999999998886544 67788888877766554  344555555554    3443 


Q ss_pred             -HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014507          311 -RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVAL  350 (423)
Q Consensus       311 -~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  350 (423)
                       ..+.....++...|++++|...|++..+  +.|+......
T Consensus       157 ~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~  195 (208)
T 3urz_A          157 QYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKT  195 (208)
T ss_dssp             HHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence             3344455566778889999999998876  5677654433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.97  E-value=1.7e-07  Score=78.80  Aligned_cols=177  Identities=13%  Similarity=0.073  Sum_probs=115.2

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----ChhHHHHHH
Q 014507          188 NAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG----MLDRGEVLL  263 (423)
Q Consensus       188 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~----~~~~a~~~~  263 (423)
                      +|.+.|++..+.|   +...+..+...|...+++++|.++|++..+.|   +...+..|...|.. +    ++++|...|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            4556666666654   66667777777777777777777777777654   55666666666666 5    677777777


Q ss_pred             HHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 014507          264 REMDAQEVYVGSEVYKALLRGYSM----NGNSEGAQRVFEAIQFAGIT-PDARMCALLINAYQM----AGQSQKAYTAFQ  334 (423)
Q Consensus       264 ~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~~~  334 (423)
                      ++..+.|   +...+..|-..|..    .+++++|.+.|++..+.|.. .+...+..|-..|..    .+++++|.++|+
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            7776654   44566666666666    67777777777777765411 015666677777766    667777777777


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCCC
Q 014507          335 NMRKAGLEPSDKCVALILSACEKE-N-----QLNRALEFLIDLERDGF  376 (423)
Q Consensus       335 ~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g~  376 (423)
                      +..+.  ..+...+..|...|... |     ++++|..++++..+.|.
T Consensus       154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~  199 (212)
T 3rjv_A          154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF  199 (212)
T ss_dssp             HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred             HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence            77664  12334555566665543 2     67777777777766654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.97  E-value=1.4e-07  Score=82.93  Aligned_cols=214  Identities=14%  Similarity=0.033  Sum_probs=155.7

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507          175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG  254 (423)
Q Consensus       175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~  254 (423)
                      -+.+++...|+++..         ..-.|....+..+...+ ..+    |...|++..+.+ .++..++..+..++...|
T Consensus        50 ~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la~~~-~~~----a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g  114 (310)
T 3mv2_B           50 YKAKTLLALGQYQSQ---------DPTSKLGKVLDLYVQFL-DTK----NIEELENLLKDK-QNSPYELYLLATAQAILG  114 (310)
T ss_dssp             HHHHHHHHTTCCCCC---------CSSSTTHHHHHHHHHHH-TTT----CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHcCCCccC---------CCCCHHHHHHHHHHHHh-ccc----HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence            355777777776642         12334443444333333 322    778888887765 566777778899999999


Q ss_pred             ChhHHHHHHHHHHhCCCC-CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-----CHHHHHHHHHHH--HHcC--
Q 014507          255 MLDRGEVLLREMDAQEVY-VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-----DARMCALLINAY--QMAG--  324 (423)
Q Consensus       255 ~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~--~~~g--  324 (423)
                      ++++|++++.+..+.+.. -+...+..++..+.+.|+.+.|.+.++.|.+.  .|     +..+...+..++  ...|  
T Consensus       115 ~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~  192 (310)
T 3mv2_B          115 DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKE  192 (310)
T ss_dssp             CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCc
Confidence            999999999998776642 26678889999999999999999999999875  56     355666666663  3334  


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C----CCcCHHHHHHHHHHHHHcCC
Q 014507          325 QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD-----G----FMVGKEASCTLAAWFKRLGV  395 (423)
Q Consensus       325 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g----~~~~~~~~~~l~~~~~~~g~  395 (423)
                      ++.+|..+|+++.+.  .|+..+-..++.++.+.|++++|.+.++.+.+.     .    -+-++.++..++......|+
T Consensus       193 ~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk  270 (310)
T 3mv2_B          193 TATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL  270 (310)
T ss_dssp             TTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh
Confidence            899999999999764  466444445555889999999999999977653     1    13467777677777777887


Q ss_pred             HHHHHHHHHHhccc
Q 014507          396 VEEVEHVLREYGLR  409 (423)
Q Consensus       396 ~~~A~~~~~~m~~~  409 (423)
                        +|.++++++.+.
T Consensus       271 --~a~~l~~qL~~~  282 (310)
T 3mv2_B          271 --DTEDLTNQLVKL  282 (310)
T ss_dssp             --TTHHHHHHHHHT
T ss_pred             --HHHHHHHHHHHh
Confidence              889999988764

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.93  E-value=1e-06  Score=78.10  Aligned_cols=217  Identities=10%  Similarity=-0.073  Sum_probs=108.4

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc---CChh
Q 014507          187 QNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG--NLKMAEETFEEIKLLGEPLDKRSYGSMVMAY----VRA---GMLD  257 (423)
Q Consensus       187 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~----~~~---~~~~  257 (423)
                      ++|+.+++.+...... +...|+.--..+...|  +++++++.++.+.... +-+..+|+.--..+    ...   ++++
T Consensus        50 ~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~~  127 (306)
T 3dra_A           50 ERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDPY  127 (306)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCTH
T ss_pred             HHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCHH
Confidence            4555555555554322 3444554444444455  5555555555555543 12333333333333    233   4555


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC------HHHH
Q 014507          258 RGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSE--GAQRVFEAIQFAGITPDARMCALLINAYQMAGQ------SQKA  329 (423)
Q Consensus       258 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~------~~~a  329 (423)
                      +++.+++++.+.... +..+|+.-...+.+.|.++  ++++.++++.+.. .-|...|+.-...+.+.|+      ++++
T Consensus       128 ~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~~eE  205 (306)
T 3dra_A          128 REFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTIDEE  205 (306)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhHHHH
Confidence            555555555554433 4555555555555555555  5555555555543 2255555554444444444      5556


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHCC--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          330 YTAFQNMRKAGLEPSDKCVALILSACEKENQL-NRALEFLIDLERDG--FMVGKEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       330 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      ++.++.+.... +-|...|+.+-..+.+.|+. +.+..+..++.+.+  -..+...+..+.+.|.+.|+.++|.++++.+
T Consensus       206 l~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l  284 (306)
T 3dra_A          206 LNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLL  284 (306)
T ss_dssp             HHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHH
Confidence            66666555532 22455555555555555543 22334444443321  1234555666666666666666666666665


Q ss_pred             cc
Q 014507          407 GL  408 (423)
Q Consensus       407 ~~  408 (423)
                      .+
T Consensus       285 ~~  286 (306)
T 3dra_A          285 KS  286 (306)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.91  E-value=3.8e-07  Score=76.71  Aligned_cols=177  Identities=15%  Similarity=0.073  Sum_probs=146.4

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC----CHHHHHHH
Q 014507          222 KMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG----NSEGAQRV  297 (423)
Q Consensus       222 ~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g----~~~~a~~~  297 (423)
                      .+|.++|++..+.|   +...+..|...|...+++++|...|++..+.|   +...+..|-..|.. +    +.++|.+.
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            35778888888865   78889999999999999999999999999876   56788888888888 6    89999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHH
Q 014507          298 FEAIQFAGITPDARMCALLINAYQM----AGQSQKAYTAFQNMRKAGLE-PSDKCVALILSACEK----ENQLNRALEFL  368 (423)
Q Consensus       298 ~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~  368 (423)
                      |++..+.|   +...+..+...|..    .+++++|.++|++..+.|.. -+...+..|...|..    .+++++|..+|
T Consensus        76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            99998754   77788888888877    88999999999999886521 026778888888888    88999999999


Q ss_pred             HHHHHCCCCcCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHhcccC
Q 014507          369 IDLERDGFMVGKEASCTLAAWFKRL-G-----VVEEVEHVLREYGLRE  410 (423)
Q Consensus       369 ~~m~~~g~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~~  410 (423)
                      ++..+.  ..+...+..|..+|... |     ++++|.+.|++-.+.+
T Consensus       153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            999886  24455677788888764 3     8999999999876654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.90  E-value=1.4e-07  Score=84.28  Aligned_cols=187  Identities=9%  Similarity=-0.024  Sum_probs=116.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHHHHHH
Q 014507          212 VVMYSKAGNLKMAEETFEEIKLL----GEPL-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ----EVYV-GSEVYKAL  281 (423)
Q Consensus       212 i~~~~~~g~~~~A~~~~~~m~~~----g~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~l  281 (423)
                      ...|...|++++|...|.+..+.    |-.+ -..+|+.+...|.+.|++++|...|++..+.    |-.. -..++..+
T Consensus        43 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l  122 (307)
T 2ifu_A           43 AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRA  122 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            45566778888888877776542    1110 1346777777888888888888888776542    2111 13466777


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHH
Q 014507          282 LRGYSMNGNSEGAQRVFEAIQFA----GITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLEPS-DKCVALI  351 (423)
Q Consensus       282 i~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l  351 (423)
                      ...|.. |++++|...|++....    |-.+ ...+++.+...|...|++++|.+.|++..+.    +..+. ...+..+
T Consensus       123 g~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  201 (307)
T 2ifu_A          123 GKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ  201 (307)
T ss_dssp             HHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHH
Confidence            777777 8888888888776542    1100 1456777788888888888888888877652    21121 2255566


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCC--CCcC--HHHHHHHHHHHHHcCCHHHHHH
Q 014507          352 LSACEKENQLNRALEFLIDLERDG--FMVG--KEASCTLAAWFKRLGVVEEVEH  401 (423)
Q Consensus       352 i~~~~~~g~~~~a~~~~~~m~~~g--~~~~--~~~~~~l~~~~~~~g~~~~A~~  401 (423)
                      ...+...|++++|...+++.. ..  +...  ......++.++ ..|+.+.+.+
T Consensus       202 g~~~~~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          202 VLVQLHRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            666677788888888888877 31  1111  12344455554 5677666555

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.89  E-value=2.3e-08  Score=99.66  Aligned_cols=184  Identities=10%  Similarity=0.004  Sum_probs=129.8

Q ss_pred             HHcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014507          216 SKAGNLKMAEETFEEIK--------LLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM  287 (423)
Q Consensus       216 ~~~g~~~~A~~~~~~m~--------~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  287 (423)
                      ...|++++|++.+++..        +.. +.+...+..+..++...|++++|...|++..+.+.. +...|..+..++.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            56788888888888877        332 335567777888888888888888888888775443 66778888888888


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507          288 NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEF  367 (423)
Q Consensus       288 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  367 (423)
                      .|++++|.+.|++..+.. +-+...|..+..++.+.|++++ .+.|++..+.+ +-+...|..+..++.+.|++++|...
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHH
Confidence            888888888888877652 2256777788888888888888 88888877643 22466777888888888888888888


Q ss_pred             HHHHHHCCCCcC-HHHHHHHHHHHHHcCC--------HHHHHHHHHHh
Q 014507          368 LIDLERDGFMVG-KEASCTLAAWFKRLGV--------VEEVEHVLREY  406 (423)
Q Consensus       368 ~~~m~~~g~~~~-~~~~~~l~~~~~~~g~--------~~~A~~~~~~m  406 (423)
                      +++..+.  .|+ ...+..+..++...|+        +++|.+.+..+
T Consensus       557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~  602 (681)
T 2pzi_A          557 LDEVPPT--SRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEAL  602 (681)
T ss_dssp             HHTSCTT--STTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTS
T ss_pred             HHhhccc--CcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhC
Confidence            8877653  354 5566666666655443        55555555544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.86  E-value=7.3e-06  Score=72.54  Aligned_cols=220  Identities=4%  Similarity=-0.093  Sum_probs=159.2

Q ss_pred             CchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc---CC
Q 014507          150 HPLYLQVAELALLEESFEANIRDYTKIIHGYGKKM--QIQNAENTLLAMKRRGFICDQVTLTVMVVMY----SKA---GN  220 (423)
Q Consensus       150 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~----~~~---g~  220 (423)
                      ..++|......++..+ +-+...|+.--..+...+  +++++++.++.+.....+ +..+|+.--..+    ...   ++
T Consensus        48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~~  125 (306)
T 3dra_A           48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDFD  125 (306)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccCC
Confidence            3345666666665554 234455666666666666  888888888888877544 556666544444    444   67


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh--HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC------HH
Q 014507          221 LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD--RGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN------SE  292 (423)
Q Consensus       221 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------~~  292 (423)
                      +++++.+++++.+.. +-+..+|+.-...+.+.|.++  ++++.++++.+.+.. |...|+.-...+.+.+.      ++
T Consensus       126 ~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~  203 (306)
T 3dra_A          126 PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTID  203 (306)
T ss_dssp             THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHH
Confidence            888888888888875 457788888777788888887  888888888887766 77788777777777776      88


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 014507          293 GAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK-AYTAFQNMRKAG--LEPSDKCVALILSACEKENQLNRALEFLI  369 (423)
Q Consensus       293 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~  369 (423)
                      ++++.++.+.... +-|...|+..-..+.+.|+..+ +.++..++.+.+  -..+...+..+...+.+.|+.++|.++++
T Consensus       204 eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          204 EELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            8888888887753 3488888888888888887444 555666655432  13467788888888989999999999999


Q ss_pred             HHHHC
Q 014507          370 DLERD  374 (423)
Q Consensus       370 ~m~~~  374 (423)
                      .+.+.
T Consensus       283 ~l~~~  287 (306)
T 3dra_A          283 LLKSK  287 (306)
T ss_dssp             HHHHT
T ss_pred             HHHhc
Confidence            98764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.86  E-value=1.5e-07  Score=83.36  Aligned_cols=164  Identities=11%  Similarity=0.014  Sum_probs=87.5

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGS-MV  247 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~-li  247 (423)
                      +...+..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|...+++....  .|+...... ..
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~  192 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHH
Confidence            3344455555566666666666666666555332 4555666666666666666666666655443  233332221 22


Q ss_pred             HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCH
Q 014507          248 MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGIT-PDARMCALLINAYQMAGQS  326 (423)
Q Consensus       248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~  326 (423)
                      ..+...++.+.|...+++..+.... +...+..+...+...|++++|.+.|+++...... .+...+..+...+...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            2244455555566666555554332 4555556666666666666666666655553211 0144555556666666666


Q ss_pred             HHHHHHHHHH
Q 014507          327 QKAYTAFQNM  336 (423)
Q Consensus       327 ~~a~~~~~~m  336 (423)
                      ++|...|++.
T Consensus       272 ~~a~~~~r~a  281 (287)
T 3qou_A          272 DALASXYRRQ  281 (287)
T ss_dssp             CHHHHHHHHH
T ss_pred             CcHHHHHHHH
Confidence            5555555543

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.85  E-value=5.7e-08  Score=96.83  Aligned_cols=174  Identities=13%  Similarity=0.016  Sum_probs=122.3

Q ss_pred             HhcCCchHHHHHHHHHhh-------cccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507          146 KLMEHPLYLQVAELALLE-------ESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKA  218 (423)
Q Consensus       146 ~~~~~~~~a~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  218 (423)
                      ...++.++|...+...++       ...+.+...+..+...+...|++++|.+.|++..+.... +...|..+..++...
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~  480 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELLT  480 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHHc
Confidence            567777777777776651       112345667777777888888888888888887776433 667777788888888


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Q 014507          219 GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVF  298 (423)
Q Consensus       219 g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  298 (423)
                      |++++|.+.|++..+.. +-+...|..+..++.+.|++++ .+.|++..+.+.. +...|..+..++.+.|++++|.+.|
T Consensus       481 g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~  557 (681)
T 2pzi_A          481 GDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRTL  557 (681)
T ss_dssp             TCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88888888888877764 3356777778888888888888 8888887776543 5667788888888888888888888


Q ss_pred             HHHHHCCCCCC-HHHHHHHHHHHHHcCC
Q 014507          299 EAIQFAGITPD-ARMCALLINAYQMAGQ  325 (423)
Q Consensus       299 ~~m~~~g~~p~-~~~~~~li~~~~~~g~  325 (423)
                      ++..+.  .|+ ...|..+..++...|+
T Consensus       558 ~~al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          558 DEVPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HTSCTT--STTHHHHHHHHHHHTC----
T ss_pred             Hhhccc--CcccHHHHHHHHHHHHccCC
Confidence            877654  443 4566666666655444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.85  E-value=4.9e-07  Score=76.77  Aligned_cols=185  Identities=10%  Similarity=0.011  Sum_probs=110.1

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH-HHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFI-C-DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP-LDK-RSYGS  245 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~~~-~~~~~  245 (423)
                      ...+..+...+.+.|++++|...|+++.+.... | ....+..+..+|.+.|++++|...|++..+.... +.. ..+..
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            344555666777788888888888887765332 1 1346666777888888888888888887765311 111 23444


Q ss_pred             HHHHHHH------------------cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC
Q 014507          246 MVMAYVR------------------AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGIT  307 (423)
Q Consensus       246 li~~~~~------------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  307 (423)
                      +..++..                  .|++++|...|+++.+.... +.........          ...+...+.     
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~----------l~~~~~~~~-----  147 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKR----------LVFLKDRLA-----  147 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHH----------HHHHHHHHH-----
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHH----------HHHHHHHHH-----
Confidence            4444443                  34455555555555543211 1111111000          000000000     


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507          308 PDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS----DKCVALILSACEKENQLNRALEFLIDLERDG  375 (423)
Q Consensus       308 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  375 (423)
                         .....+...|.+.|++++|...|+++.+.  .|+    ...+..+..++.+.|+.++|.+.++.+...+
T Consensus       148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence               01134567788899999999999998874  343    2567788888999999999999999888763

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.85  E-value=1.1e-07  Score=92.70  Aligned_cols=154  Identities=7%  Similarity=-0.138  Sum_probs=102.1

Q ss_pred             cCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 014507          148 MEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEET  227 (423)
Q Consensus       148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~  227 (423)
                      .|+.++|...++...+.. +.+...|..+...+...|++++|.+.+++..+.... +...|..+...|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            356667777666665543 335677777888888888888888888887776433 567777788888888888888888


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC---CCHHHHHHHHHHHHHC
Q 014507          228 FEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN---GNSEGAQRVFEAIQFA  304 (423)
Q Consensus       228 ~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~  304 (423)
                      |++..+.. +.+...+..+..+|.+.|++++|.+.+++..+.... +...+..+...+...   |+.++|.+.+++..+.
T Consensus        80 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            88877764 345677778888888888888888888887775433 566777778888888   8888888888877765


Q ss_pred             C
Q 014507          305 G  305 (423)
Q Consensus       305 g  305 (423)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.84  E-value=1.4e-07  Score=83.53  Aligned_cols=165  Identities=7%  Similarity=-0.010  Sum_probs=109.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH-HHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYK-ALL  282 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li  282 (423)
                      +...+..+...+.+.|++++|...|++..+.. +-+...+..+...+.+.|++++|...+++.....  |+..... ...
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~  192 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence            45566677777778888888888888877764 3356777778888888888888888887776543  3433222 222


Q ss_pred             HHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCH
Q 014507          283 RGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE-PSDKCVALILSACEKENQL  361 (423)
Q Consensus       283 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~  361 (423)
                      ..+.+.++.++|.+.+++..... +.+...+..+...+...|++++|.+.|.++.+..-. .+...+..+...+...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            33555666666777777766542 335667777777777777777777777777763211 1245667777777777777


Q ss_pred             HHHHHHHHHHH
Q 014507          362 NRALEFLIDLE  372 (423)
Q Consensus       362 ~~a~~~~~~m~  372 (423)
                      ++|...+++..
T Consensus       272 ~~a~~~~r~al  282 (287)
T 3qou_A          272 DALASXYRRQL  282 (287)
T ss_dssp             CHHHHHHHHHH
T ss_pred             CcHHHHHHHHH
Confidence            77776666543

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.83  E-value=1.8e-07  Score=91.26  Aligned_cols=154  Identities=13%  Similarity=0.013  Sum_probs=116.3

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHH
Q 014507          183 KMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVL  262 (423)
Q Consensus       183 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~  262 (423)
                      .|++++|.+.+++..+.... +...|..+...+.+.|++++|.+.|++..+.. +.+...+..+..+|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            47889999999998776333 67889999999999999999999999998864 44678899999999999999999999


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHC
Q 014507          263 LREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMA---GQSQKAYTAFQNMRKA  339 (423)
Q Consensus       263 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~  339 (423)
                      +++..+.... +...+..+...|.+.|++++|.+.+++..+.. +.+...+..+..++...   |++++|.+.+++..+.
T Consensus        80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            9999886543 67889999999999999999999999988753 33678888899999999   9999999999998875


Q ss_pred             C
Q 014507          340 G  340 (423)
Q Consensus       340 ~  340 (423)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.83  E-value=8.9e-08  Score=77.96  Aligned_cols=158  Identities=13%  Similarity=0.046  Sum_probs=75.3

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHc
Q 014507          175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA-YVRA  253 (423)
Q Consensus       175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~  253 (423)
                      .....+...|++++|...|++..+.... +...+..+...+...|++++|...|++..+..  |+...+..+... +...
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhh
Confidence            3445555666666666666655543221 45556666666666666666666666554432  233322221111 1111


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 014507          254 GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTA  332 (423)
Q Consensus       254 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~  332 (423)
                      ++...+...+++..+.... +...+..+...+...|++++|...|+++.+....+ +...+..+..++...|+.++|...
T Consensus        88 ~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             cccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            2222344555554443222 34455555555555555555555555554432111 233445555555555555555555


Q ss_pred             HHHH
Q 014507          333 FQNM  336 (423)
Q Consensus       333 ~~~m  336 (423)
                      |++.
T Consensus       167 y~~a  170 (176)
T 2r5s_A          167 YRRQ  170 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.83  E-value=5e-06  Score=81.91  Aligned_cols=334  Identities=8%  Similarity=-0.013  Sum_probs=203.5

Q ss_pred             cceeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCCC---HHHHHHHHHHhc--C---CChhhHHH
Q 014507           73 SMFTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETGN---LSDLLAAWVRFM--K---PRRADWLA  140 (423)
Q Consensus        73 ~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~--~---p~~~~~~~  140 (423)
                      +...|..++....+ +..+.+..+|+++..   .....|...+..-.+.|+   ++.+.++|++.+  .   |+...|..
T Consensus        65 d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~LW~~  144 (679)
T 4e6h_A           65 DIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSLWLS  144 (679)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence            45778877776653 344777778887765   345678888887777788   999999999973  2   78877777


Q ss_pred             HHHHHHhcCCc----hHH----HHHHHHHh-hccc-CC-CHHHHHHHHHHHHc---------cCCHHHHHHHHHHHHHcC
Q 014507          141 VLKQLKLMEHP----LYL----QVAELALL-EESF-EA-NIRDYTKIIHGYGK---------KMQIQNAENTLLAMKRRG  200 (423)
Q Consensus       141 ll~~~~~~~~~----~~a----~~~~~~~~-~~~~-~~-~~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~g  200 (423)
                      -+.-..+.++.    +.+    ..+++..+ ..|. .+ +...|...+.....         .++++.+..+|+......
T Consensus       145 Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~raL~iP  224 (679)
T 4e6h_A          145 YITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTLLCQP  224 (679)
T ss_dssp             HHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHHHhCc
Confidence            66655554443    222    34444433 2355 44 34677777765432         334667777777776432


Q ss_pred             CCCCHHHHH---HHHHHHH----------HcCCHHHH-------------------------------------------
Q 014507          201 FICDQVTLT---VMVVMYS----------KAGNLKMA-------------------------------------------  224 (423)
Q Consensus       201 ~~p~~~~~~---~li~~~~----------~~g~~~~A-------------------------------------------  224 (423)
                      ...-..+|.   .+-....          ...+++.|                                           
T Consensus       225 ~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~l  304 (679)
T 4e6h_A          225 MDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLI  304 (679)
T ss_dssp             CSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHH
Confidence            111112221   1111100          00011112                                           


Q ss_pred             ------------------------HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH-HHHHHHHhCCCCCCHHHHH
Q 014507          225 ------------------------EETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGE-VLLREMDAQEVYVGSEVYK  279 (423)
Q Consensus       225 ------------------------~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~p~~~~~~  279 (423)
                                              ..+|++.... ++.....|-....-+...|+.++|. ++|++.... ++.+...+-
T Consensus       305 W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl  382 (679)
T 4e6h_A          305 WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAF  382 (679)
T ss_dssp             HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHH
T ss_pred             HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHH
Confidence                                    2233333322 1223344444444455677888886 888888764 334666677


Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCC---------CCCC------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          280 ALLRGYSMNGNSEGAQRVFEAIQFAG---------ITPD------------ARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       280 ~li~~~~~~g~~~~a~~~~~~m~~~g---------~~p~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      ..+...-+.|++++|.++|+.+....         -.|+            ...|...+....+.|..+.|..+|.+..+
T Consensus       383 ~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~  462 (679)
T 4e6h_A          383 SLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRR  462 (679)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            78888888899999999998877531         0132            23577778888888889999999998887


Q ss_pred             C-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507          339 A-GLEPSDKCVALILSACEKE-NQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       339 ~-~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  410 (423)
                      . + .+....|...+..-.+. ++.+.|..+|+...+. ++-+...+...++.....|+.+.|..+|++.....
T Consensus       463 ~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~  534 (679)
T 4e6h_A          463 LKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKI  534 (679)
T ss_dssp             TGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTS
T ss_pred             hcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence            5 2 12233443333322333 4588888898888776 44456667788888888888999999988766543

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.82  E-value=3.6e-07  Score=77.61  Aligned_cols=186  Identities=9%  Similarity=0.005  Sum_probs=120.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCH-HHHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP-L-DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VGS-EVYK  279 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~-~~~~  279 (423)
                      +...+..+...+.+.|++++|...|+++.+.... + ....+..+..+|.+.|++++|...|+++.+.... +.. ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            4455666777888899999999999998875321 1 1356777888899999999999999998875433 111 2444


Q ss_pred             HHHHHHHh------------------CCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507          280 ALLRGYSM------------------NGNSEGAQRVFEAIQFAGITPDA-RMCALLINAYQMAGQSQKAYTAFQNMRKAG  340 (423)
Q Consensus       280 ~li~~~~~------------------~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  340 (423)
                      .+..++.+                  .|+.++|...|+++.+.  .|+. ..+......          ..+...+.   
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l----------~~~~~~~~---  147 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRL----------VFLKDRLA---  147 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHH----------HHHHHHHH---
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHH----------HHHHHHHH---
Confidence            44444443                  34556666666665543  2321 111111100          00000000   


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC----HHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507          341 LEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVG----KEASCTLAAWFKRLGVVEEVEHVLREYGLRET  411 (423)
Q Consensus       341 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  411 (423)
                           .....+...+.+.|++++|...++++.+.-  |+    ...+..+..+|.+.|++++|.+.++.+...+.
T Consensus       148 -----~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          148 -----KYEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             -----HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             -----HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence                 011345667889999999999999998752  33    35688899999999999999999998876543

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.80  E-value=3.1e-08  Score=78.43  Aligned_cols=109  Identities=8%  Similarity=0.014  Sum_probs=46.8

Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHH
Q 014507          181 GKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGE  260 (423)
Q Consensus       181 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~  260 (423)
                      ...|++++|+..++........ +...+-.+...|.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|.
T Consensus         8 ~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~   85 (150)
T 4ga2_A            8 RSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAV   85 (150)
T ss_dssp             CCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHH
Confidence            3344444444444443332100 12223334444445555555555555444432 223444444444444444444444


Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 014507          261 VLLREMDAQEVYVGSEVYKALLRGYSMNGNSE  292 (423)
Q Consensus       261 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  292 (423)
                      ..|++..+.... +..++..+...|.+.|+.+
T Consensus        86 ~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~  116 (150)
T 4ga2_A           86 ECYRRSVELNPT-QKDLVLKIAELLCKNDVTD  116 (150)
T ss_dssp             HHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHcCChH
Confidence            444444443222 3334444444444444443

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.80  E-value=1.1e-07  Score=77.42  Aligned_cols=158  Identities=10%  Similarity=0.021  Sum_probs=72.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhC
Q 014507          210 VMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRG-YSMN  288 (423)
Q Consensus       210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~  288 (423)
                      .....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+...  +...+..+... +...
T Consensus        11 ~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A           11 KQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhh
Confidence            34445556666666666666554432 22445555666666666666666666655544322  22222211111 1111


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHH
Q 014507          289 GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEF  367 (423)
Q Consensus       289 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~  367 (423)
                      ++..+|...+++..+.. +.+...+..+..++...|++++|...|+++.+..-.+ +...+..+...+...|+.++|...
T Consensus        88 ~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~  166 (176)
T 2r5s_A           88 AAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASK  166 (176)
T ss_dssp             HTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             cccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHH
Confidence            11122444444444321 1134445555555555555555555555554432111 123444445555555555555555


Q ss_pred             HHHH
Q 014507          368 LIDL  371 (423)
Q Consensus       368 ~~~m  371 (423)
                      +++.
T Consensus       167 y~~a  170 (176)
T 2r5s_A          167 YRRQ  170 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.78  E-value=4.8e-07  Score=80.84  Aligned_cols=174  Identities=12%  Similarity=0.025  Sum_probs=79.1

Q ss_pred             CCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccC-----CCHHHHHHHHHHHHccCCHHHHHH
Q 014507          117 TGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFE-----ANIRDYTKIIHGYGKKMQIQNAEN  191 (423)
Q Consensus       117 ~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~  191 (423)
                      .++++.|.+.|.+.           ...+...|+++.|...+....+....     .-...|+.+...|.+.|++++|..
T Consensus        29 ~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~   97 (307)
T 2ifu_A           29 KPDYDSAASEYAKA-----------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQ   97 (307)
T ss_dssp             SCCHHHHHHHHHHH-----------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHH
T ss_pred             CCCHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            46677777666542           33455556666665555444332110     012345555555556666666666


Q ss_pred             HHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---C--CHHHHHHHHHHHHHcCChhHHHH
Q 014507          192 TLLAMKRR----GFIC-DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP---L--DKRSYGSMVMAYVRAGMLDRGEV  261 (423)
Q Consensus       192 ~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---~--~~~~~~~li~~~~~~~~~~~a~~  261 (423)
                      .|++..+.    |-.. -..++..+...|.. |++++|+..|++..+....   +  ...++..+...|.+.|++++|..
T Consensus        98 ~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~  176 (307)
T 2ifu_A           98 YIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAA  176 (307)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            55554332    1000 12344445555544 5555555555554432100   0  02344444555555555555555


Q ss_pred             HHHHHHhC----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507          262 LLREMDAQ----EVYVG-SEVYKALLRGYSMNGNSEGAQRVFEAIQ  302 (423)
Q Consensus       262 ~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  302 (423)
                      .|++..+.    +..+. ...+..+...+...|++++|...|++..
T Consensus       177 ~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al  222 (307)
T 2ifu_A          177 SLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY  222 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence            55544431    11111 1133334444444455555555554444

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.74  E-value=6.8e-06  Score=72.72  Aligned_cols=161  Identities=11%  Similarity=-0.026  Sum_probs=84.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CC----HHHHHHH
Q 014507          212 VVMYSKAGNLKMAEETFEEIKLLGE-PLDK----RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VG----SEVYKAL  281 (423)
Q Consensus       212 i~~~~~~g~~~~A~~~~~~m~~~g~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~l  281 (423)
                      +..+...|++++|..++++..+... .|+.    ..+..+...+...+++++|...+++..+.... ++    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            4556666777777777766665321 1111    12223444455555666666666666653211 11    2246666


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHH----C-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHH
Q 014507          282 LRGYSMNGNSEGAQRVFEAIQF----A-GITP-DARMCALLINAYQMAGQSQKAYTAFQNMRK----AGLEPS-DKCVAL  350 (423)
Q Consensus       282 i~~~~~~g~~~~a~~~~~~m~~----~-g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~  350 (423)
                      ...|...|++++|...|+++.+    . +..+ ...+|..+...|.+.|++++|.+.+++..+    .+..+. ..+|..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            6666666666666666665552    1 1111 123555666666666666666666665543    222222 445555


Q ss_pred             HHHHHHHcCC-HHHHHHHHHHHH
Q 014507          351 ILSACEKENQ-LNRALEFLIDLE  372 (423)
Q Consensus       351 li~~~~~~g~-~~~a~~~~~~m~  372 (423)
                      +...+.+.|+ +++|.+.+++..
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHH
Confidence            6666666663 466666555543

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.73  E-value=6.8e-06  Score=72.69  Aligned_cols=162  Identities=12%  Similarity=-0.029  Sum_probs=124.0

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhCCC-CCCH----HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 014507          245 SMVMAYVRAGMLDRGEVLLREMDAQEV-YVGS----EVYKALLRGYSMNGNSEGAQRVFEAIQFAGIT-PD----ARMCA  314 (423)
Q Consensus       245 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~----~~~~~  314 (423)
                      ..+..+...|++++|...+++..+... .|+.    ..+..+...+...|++++|...+++....... ++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            346778899999999999999887432 2332    23445777788888999999999999873222 23    34789


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC-HHHH
Q 014507          315 LLINAYQMAGQSQKAYTAFQNMRK----A-GLEPS-DKCVALILSACEKENQLNRALEFLIDLERD----GFMVG-KEAS  383 (423)
Q Consensus       315 ~li~~~~~~g~~~~a~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~-~~~~  383 (423)
                      .+..+|...|++++|...|++..+    . +..+. ..++..+...|.+.|++++|...+++..+.    +..+. ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            999999999999999999999874    1 22222 347889999999999999999999987643    22232 6789


Q ss_pred             HHHHHHHHHcCC-HHHHHHHHHHh
Q 014507          384 CTLAAWFKRLGV-VEEVEHVLREY  406 (423)
Q Consensus       384 ~~l~~~~~~~g~-~~~A~~~~~~m  406 (423)
                      ..+..+|.+.|+ +++|.+.+++.
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~A  263 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHH
Confidence            999999999994 68888777654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.73  E-value=5.7e-06  Score=73.21  Aligned_cols=166  Identities=11%  Similarity=-0.035  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCChhHHHHHHHHHHhCCC---CCC--
Q 014507          206 VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDK------RSYGSMVMAYVRAGMLDRGEVLLREMDAQEV---YVG--  274 (423)
Q Consensus       206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~p~--  274 (423)
                      ..+...+..+...|++++|.+.+.+..+.... ..      ..+..+...+...|++++|...+++..+...   .+.  
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~  154 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEY-HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN  154 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccC-ChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence            34555667777888888888888777664322 22      2233455556677788888888888765321   112  


Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC
Q 014507          275 SEVYKALLRGYSMNGNSEGAQRVFEAIQF---A-GITP--DARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLEPS  344 (423)
Q Consensus       275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~-g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~  344 (423)
                      ..+++.+...|...|++++|...+++..+   . +..+  ...+++.+...|...|++++|.+.+++..+.    +....
T Consensus       155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~  234 (293)
T 2qfc_A          155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL  234 (293)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence            44778888888888888888888887662   1 1111  1257788888888889999888888877642    21121


Q ss_pred             -HHHHHHHHHHHHHcCCHHHH-HHHHHHHH
Q 014507          345 -DKCVALILSACEKENQLNRA-LEFLIDLE  372 (423)
Q Consensus       345 -~~~~~~li~~~~~~g~~~~a-~~~~~~m~  372 (423)
                       ..+|..+...+...|++++| ...+++..
T Consensus       235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence             56778888888888888888 66676654

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.71  E-value=4.3e-07  Score=71.71  Aligned_cols=114  Identities=13%  Similarity=0.038  Sum_probs=67.2

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507          173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR  252 (423)
Q Consensus       173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  252 (423)
                      +-.+...|.+.|++++|++.|++..+.... +..+|..+...|.+.|++++|...|++..+.. +-+..+|..+...|.+
T Consensus        34 ~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~  111 (150)
T 4ga2_A           34 GFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKAVECYRRSVELN-PTQKDLVLKIAELLCK  111 (150)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            334556666666666666666666665333 55666666666666666666666666666653 2345666666666666


Q ss_pred             cCChhHHHHH-HHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 014507          253 AGMLDRGEVL-LREMDAQEVYVGSEVYKALLRGYSMNG  289 (423)
Q Consensus       253 ~~~~~~a~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g  289 (423)
                      .|+++++.+. +++..+.... +..+|......+.+.|
T Consensus       112 ~~~~~~aa~~~~~~al~l~P~-~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A          112 NDVTDGRAKYWVERAAKLFPG-SPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HCSSSSHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTCC
T ss_pred             cCChHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence            6666554443 4555554332 4555555555555554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.68  E-value=2.6e-06  Score=71.20  Aligned_cols=127  Identities=11%  Similarity=-0.026  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS  286 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  286 (423)
                      .+..+...+...|++++|...|++..    .|+...|..+...+...|++++|...|++..+.... +...+..+..+|.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence            34455566666777777777776552    456666777777777777777777777766665422 5566666666777


Q ss_pred             hCCCHHHHHHHHHHHHHCCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          287 MNGNSEGAQRVFEAIQFAGIT--------------P-DARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       287 ~~g~~~~a~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      ..|++++|.+.|+...+....              | ....+..+..+|...|++++|.+.|+...+
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  149 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  149 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            777777777777666654211              0 124556666666666666666666666655

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.68  E-value=1.2e-05  Score=72.16  Aligned_cols=217  Identities=8%  Similarity=-0.082  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-ChhHHHHH
Q 014507          186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG-NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA-G-MLDRGEVL  262 (423)
Q Consensus       186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-~-~~~~a~~~  262 (423)
                      .++|+++++.+...... +..+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+.+. + ++++++++
T Consensus        70 se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~EL~~  147 (349)
T 3q7a_A           70 SERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSEIEY  147 (349)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHHHHH
T ss_pred             CHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHHHHH
Confidence            34555555555554332 4444554444444445 3555555555555543 22444555544444444 4 55555555


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-------HH
Q 014507          263 LREMDAQEVYVGSEVYKALLRGYSMNGNSE--------GAQRVFEAIQFAGITPDARMCALLINAYQMAGQ-------SQ  327 (423)
Q Consensus       263 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-------~~  327 (423)
                      ++++.+.... |..+|+.-...+.+.|..+        ++++.++++.+.. .-|...|+.....+.+.++       ++
T Consensus       148 ~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~~~~  225 (349)
T 3q7a_A          148 IHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSRSLQ  225 (349)
T ss_dssp             HHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHHHHH
T ss_pred             HHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchHHHH
Confidence            5555554433 4444444333333333333        5555555555543 2255556655555555554       45


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHCC-----CCcCHHH
Q 014507          328 KAYTAFQNMRKAGLEPSDKCVALILSACEKENQL--------------------NRALEFLIDLERDG-----FMVGKEA  382 (423)
Q Consensus       328 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~g-----~~~~~~~  382 (423)
                      ++++.+++..... +-|...|+.+-..+.+.|+.                    ....++..++...+     -.++...
T Consensus       226 eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~a  304 (349)
T 3q7a_A          226 DELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLA  304 (349)
T ss_dssp             HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHH
Confidence            6666666655532 22455555544444444432                    22222222222211     1356666


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          383 SCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       383 ~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      ..-|++.|...|+.++|.++++.+.
T Consensus       305 l~~l~d~~~~~~~~~~a~~~~~~l~  329 (349)
T 3q7a_A          305 LEYLADSFIEQNRVDDAAKVFEKLS  329 (349)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            7777777777777777777777775

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.68  E-value=2.1e-06  Score=71.88  Aligned_cols=127  Identities=16%  Similarity=-0.005  Sum_probs=102.6

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507          173 YTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR  252 (423)
Q Consensus       173 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~  252 (423)
                      +..+...+...|++++|...|++..    .|+...|..+...|.+.|++++|...|++..+.. +.+...|..+..++..
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHH
Confidence            4456677788899999998888763    5578888888888999999999999998888764 4467788888888999


Q ss_pred             cCChhHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507          253 AGMLDRGEVLLREMDAQEVY--------------V-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA  304 (423)
Q Consensus       253 ~~~~~~a~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  304 (423)
                      .|++++|...|++..+....              | ....+..+..+|.+.|++++|.+.|+...+.
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            99999999999888875322              1 2367888888999999999999999998875

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.66  E-value=2e-06  Score=68.62  Aligned_cols=127  Identities=16%  Similarity=0.060  Sum_probs=61.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS  286 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  286 (423)
                      .+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++..+.... +...+..+...+.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence            34444455555555555555555555432 224445555555555555555555555555543221 3445555555555


Q ss_pred             hCCCHHHHHHHHHHHHHCCCCCCHHHHHH--HHHHHHHcCCHHHHHHHHHHH
Q 014507          287 MNGNSEGAQRVFEAIQFAGITPDARMCAL--LINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       287 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m  336 (423)
                      ..|++++|...+++..... +.+...+..  ....+...|++++|.+.+...
T Consensus        93 ~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  143 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHK  143 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence            5555555555555554431 112333322  222244455555555555443

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.66  E-value=5.8e-06  Score=73.16  Aligned_cols=166  Identities=11%  Similarity=-0.025  Sum_probs=125.9

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CCCC--H
Q 014507          241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVG-----SEVYKALLRGYSMNGNSEGAQRVFEAIQFAG---ITPD--A  310 (423)
Q Consensus       241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g---~~p~--~  310 (423)
                      ..+...+..+...|++++|.+.+++..+......     ...+..+...+...|++++|...+++.....   ..+.  .
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  155 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL  155 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence            3455677788899999999999998887543311     1234456677888999999999999887532   1222  4


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCc-C
Q 014507          311 RMCALLINAYQMAGQSQKAYTAFQNMRKA-GLEPS-----DKCVALILSACEKENQLNRALEFLIDLERD----GFMV-G  379 (423)
Q Consensus       311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~-~  379 (423)
                      .+|+.+...|...|++++|...|++..+. ...|+     ..++..+...|...|++++|...+++..+.    +... -
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            58899999999999999999999998731 11222     258889999999999999999999987653    1111 2


Q ss_pred             HHHHHHHHHHHHHcCCHHHH-HHHHHHh
Q 014507          380 KEASCTLAAWFKRLGVVEEV-EHVLREY  406 (423)
Q Consensus       380 ~~~~~~l~~~~~~~g~~~~A-~~~~~~m  406 (423)
                      ..+|..+..+|.+.|++++| ...+++-
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~A  263 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKA  263 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence            67788999999999999999 7766653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.64  E-value=4.8e-06  Score=73.22  Aligned_cols=197  Identities=8%  Similarity=-0.007  Sum_probs=120.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507          204 DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLR  283 (423)
Q Consensus       204 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  283 (423)
                      +...+..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.... +...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            45566777777778888888888888777753 336777777888888888888888888887776433 5677778888


Q ss_pred             HHHhCCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 014507          284 GYSMNGNSEGAQRVFEAIQFAG----ITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKEN  359 (423)
Q Consensus       284 ~~~~~g~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  359 (423)
                      +|...|++++|...|+...+.+    ..-....+..+  ...+.      . -+..........+......+ ..+ ..|
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~~------~-~~~~~~~~~~~~~~~i~~~l-~~l-~~~  149 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAKK------K-RWNSIEERRIHQESELHSYL-TRL-IAA  149 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHHH------H-HHHHHHHTCCCCCCHHHHHH-HHH-HHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHHH------H-HHHHHHHHHHhhhHHHHHHH-HHH-HHH
Confidence            8888888888888887766421    00111112111  11111      1 11222233333444333333 322 257


Q ss_pred             CHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHHHc-CCHHHHHHHHHHhcccCCcCCC
Q 014507          360 QLNRALEFLIDLERDGFMVG-KEASCTLAAWFKRL-GVVEEVEHVLREYGLRETYSKI  415 (423)
Q Consensus       360 ~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~~~~~~~  415 (423)
                      +.++|.+.+++..+.  .|+ ......+...+.+. +.+++|.++|++..+.......
T Consensus       150 ~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~~~~~~  205 (281)
T 2c2l_A          150 ERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKRKKRDI  205 (281)
T ss_dssp             HHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTTSCCCC
T ss_pred             HHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccccCCCC
Confidence            888888888776654  444 33344444445554 6788999999888765443333

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.64  E-value=2e-06  Score=68.59  Aligned_cols=130  Identities=9%  Similarity=-0.079  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      ...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+..++..+..+
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~   90 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAAS   90 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            345677788888999999999999998876433 67888889999999999999999999988864 4467888889999


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHH
Q 014507          250 YVRAGMLDRGEVLLREMDAQEVYVGSEVY--KALLRGYSMNGNSEGAQRVFEAIQ  302 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~  302 (423)
                      +...|++++|...|++..+.... +...+  ......+.+.|++++|.+.++...
T Consensus        91 ~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           91 NMALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            99999999999999998876433 44444  334444777889999998887654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.63  E-value=1.9e-06  Score=64.77  Aligned_cols=96  Identities=15%  Similarity=0.119  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY  250 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  250 (423)
                      ..+..+...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|..+|+++.+.. +.+..++..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            3444444555555555555555555544321 134444445555555555555555555544432 22344444444444


Q ss_pred             HHcCChhHHHHHHHHHHh
Q 014507          251 VRAGMLDRGEVLLREMDA  268 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~  268 (423)
                      ...|++++|...++++.+
T Consensus        88 ~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHH
Confidence            444555555544444444

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.61  E-value=3.4e-06  Score=63.35  Aligned_cols=96  Identities=17%  Similarity=0.189  Sum_probs=45.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014507          206 VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGY  285 (423)
Q Consensus       206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  285 (423)
                      ..|..+...+...|++++|.++|+++.+.. +.+..++..+...+.+.|++++|...++++.+.... +..++..+...+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHH
Confidence            344445555555555555555555554432 223444444455555555555555555544443211 333444444444


Q ss_pred             HhCCCHHHHHHHHHHHHH
Q 014507          286 SMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       286 ~~~g~~~~a~~~~~~m~~  303 (423)
                      ...|++++|...++++..
T Consensus        88 ~~~~~~~~A~~~~~~~~~  105 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALE  105 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHH
Confidence            444444444444444433

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.59  E-value=7.7e-07  Score=73.76  Aligned_cols=119  Identities=15%  Similarity=0.091  Sum_probs=51.6

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCh
Q 014507          182 KKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL----GEP-LDKRSYGSMVMAYVRAGML  256 (423)
Q Consensus       182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-~~~~~~~~li~~~~~~~~~  256 (423)
                      ..|++++|.+.++.+... .......+..+...+...|++++|...+++..+.    +.. ....++..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            345555555533333221 1123445555555555556665555555555431    101 1123344444555555555


Q ss_pred             hHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 014507          257 DRGEVLLREMDAQ----EVYV--GSEVYKALLRGYSMNGNSEGAQRVFEAI  301 (423)
Q Consensus       257 ~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m  301 (423)
                      ++|...+++..+.    +-.|  ....+..+...+...|++++|...+++.
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a  133 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS  133 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            5555555544331    1011  1223444444444555555555554443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.59  E-value=2.7e-06  Score=64.84  Aligned_cols=96  Identities=10%  Similarity=-0.009  Sum_probs=51.6

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV  251 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  251 (423)
                      .+......+.+.|++++|++.|++..+.... +...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            3444555555555555555555555554322 45555555555555555555555555555543 224455555555555


Q ss_pred             HcCChhHHHHHHHHHHhC
Q 014507          252 RAGMLDRGEVLLREMDAQ  269 (423)
Q Consensus       252 ~~~~~~~a~~~~~~m~~~  269 (423)
                      ..|++++|.+.|++..+.
T Consensus        93 ~~~~~~~A~~~~~~al~l  110 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQV  110 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHH
Confidence            555555555555555553

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.57  E-value=0.0001  Score=66.01  Aligned_cols=218  Identities=6%  Similarity=-0.052  Sum_probs=132.7

Q ss_pred             hHHHHHHHHHhhcccCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHH
Q 014507          152 LYLQVAELALLEESFEANIRDYTKIIHGYGKKM-QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKA-G-NLKMAEETF  228 (423)
Q Consensus       152 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-~~~~A~~~~  228 (423)
                      ++|......++..+ +-+..+|+.--..+...| .++++++.++.+.....+ +..+|+.-...+.+. + +++++++++
T Consensus        71 e~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~  148 (349)
T 3q7a_A           71 ERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYI  148 (349)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHH
Confidence            34444444444433 223344444444444445 477777777777776544 666676666555555 5 677777777


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCChh--------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC-------HHH
Q 014507          229 EEIKLLGEPLDKRSYGSMVMAYVRAGMLD--------RGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN-------SEG  293 (423)
Q Consensus       229 ~~m~~~g~~~~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-------~~~  293 (423)
                      +++.+.. +.+..+|+--...+.+.|.++        ++++.++++.+..+. |...|+.....+.+.++       +++
T Consensus       149 ~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~e  226 (349)
T 3q7a_A          149 HGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQD  226 (349)
T ss_dssp             HHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHH
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHH
Confidence            7777654 336666666555555555555        777777777776655 77777777777766665       577


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHCC-----CCCCHHHH
Q 014507          294 AQRVFEAIQFAGITPDARMCALLINAYQMAGQS--------------------QKAYTAFQNMRKAG-----LEPSDKCV  348 (423)
Q Consensus       294 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~~-----~~p~~~~~  348 (423)
                      +++.+++..... +-|...|+-+-..+.+.|+.                    .+..++..++...+     -.++...+
T Consensus       227 ELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al  305 (349)
T 3q7a_A          227 ELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLAL  305 (349)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHH
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHH
Confidence            777777766542 33677777766666665543                    23333333333221     13567778


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          349 ALILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       349 ~~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      ..++..|...|+.++|.++++.+.+.
T Consensus       306 ~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          306 EYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            88888888888888899888888655

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.57  E-value=1.2e-06  Score=72.59  Aligned_cols=157  Identities=11%  Similarity=0.024  Sum_probs=111.5

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHh----CCCCC-CHHHHHHHHHHHHhCCC
Q 014507          216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDA----QEVYV-GSEVYKALLRGYSMNGN  290 (423)
Q Consensus       216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~  290 (423)
                      ...|++++|.++++.+... ......++..+...+...|++++|...+++..+    .+..| ...++..+...+...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            4678999999966555432 223567888899999999999999999988765    22222 34577888889999999


Q ss_pred             HHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcC
Q 014507          291 SEGAQRVFEAIQFA----GITP--DARMCALLINAYQMAGQSQKAYTAFQNMRKA----GLEP-SDKCVALILSACEKEN  359 (423)
Q Consensus       291 ~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g  359 (423)
                      +++|.+.+++....    +-.|  ....+..+...+...|++++|.+.+++..+.    +... -..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999876542    2111  2345777888899999999999999887642    2111 1234677788888899


Q ss_pred             CHHHHHHHHHHHHH
Q 014507          360 QLNRALEFLIDLER  373 (423)
Q Consensus       360 ~~~~a~~~~~~m~~  373 (423)
                      ++++|.+.+++..+
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999888887654

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.55  E-value=3.5e-06  Score=63.84  Aligned_cols=93  Identities=14%  Similarity=0.036  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 014507          208 LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSM  287 (423)
Q Consensus       208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  287 (423)
                      +..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+...+.+
T Consensus        15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~   92 (131)
T 2vyi_A           15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHHHH
Confidence            3333344444444444444444443322 123333333444444444444444444443332211 23333333344444


Q ss_pred             CCCHHHHHHHHHHHH
Q 014507          288 NGNSEGAQRVFEAIQ  302 (423)
Q Consensus       288 ~g~~~~a~~~~~~m~  302 (423)
                      .|++++|...+++..
T Consensus        93 ~~~~~~A~~~~~~~~  107 (131)
T 2vyi_A           93 LNKHVEAVAYYKKAL  107 (131)
T ss_dssp             TTCHHHHHHHHHHHH
T ss_pred             hCCHHHHHHHHHHHH
Confidence            444444444444333

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.54  E-value=0.00015  Score=68.98  Aligned_cols=151  Identities=9%  Similarity=0.001  Sum_probs=86.9

Q ss_pred             CCHHHHHHHHHHhc--CCChhhHHHHHHHHHhcCC-chHHHHHHHHHhhc-cc-CCCHHHHHHHHHHHHc----cCCHHH
Q 014507          118 GNLSDLLAAWVRFM--KPRRADWLAVLKQLKLMEH-PLYLQVAELALLEE-SF-EANIRDYTKIIHGYGK----KMQIQN  188 (423)
Q Consensus       118 g~~~~a~~~~~~~~--~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~-~~-~~~~~~~~~li~~~~~----~~~~~~  188 (423)
                      |+++.+..+|++.+  .|+...|..-+.-..+.+. .+....+++..+.. |. ..+...|...+..+..    .++++.
T Consensus        28 ~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~  107 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEK  107 (493)
T ss_dssp             TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHH
Confidence            77888888888874  4777777777766666553 23445555544432 43 2356777777766542    356777


Q ss_pred             HHHHHHHHHHcCCCCCHHHH------------------------------------------------HHHHHHHHHc--
Q 014507          189 AENTLLAMKRRGFICDQVTL------------------------------------------------TVMVVMYSKA--  218 (423)
Q Consensus       189 a~~~~~~m~~~g~~p~~~~~------------------------------------------------~~li~~~~~~--  218 (423)
                      +.++|++........-...|                                                ...+.---..  
T Consensus       108 vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~  187 (493)
T 2uy1_A          108 IRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGM  187 (493)
T ss_dssp             HHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCc
Confidence            88888877663211111111                                                1111110000  


Q ss_pred             CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 014507          219 GN-----LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ  269 (423)
Q Consensus       219 g~-----~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  269 (423)
                      |-     .+.+..+|+++.... +.+...|...+.-+.+.|+++.|..++++....
T Consensus       188 ~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~  242 (493)
T 2uy1_A          188 KLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM  242 (493)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence            00     233555666666543 445666777777777788888888888888776

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.54  E-value=1.7e-05  Score=78.21  Aligned_cols=230  Identities=8%  Similarity=-0.038  Sum_probs=159.8

Q ss_pred             HHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          155 QVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAE-NTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL  233 (423)
Q Consensus       155 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  233 (423)
                      ..+++..+.. .+.+...|-..+..+...|+.++|. .+|++.... ++.+...|-..+...-+.|++++|.++|+++.+
T Consensus       329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~  406 (679)
T 4e6h_A          329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCID  406 (679)
T ss_dssp             HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            3445555544 3457778888888888888888886 899888765 344666777788888888999999999988876


Q ss_pred             cCC---------CCC------------HHHHHHHHHHHHHcCChhHHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhC-CC
Q 014507          234 LGE---------PLD------------KRSYGSMVMAYVRAGMLDRGEVLLREMDAQ-EVYVGSEVYKALLRGYSMN-GN  290 (423)
Q Consensus       234 ~g~---------~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~  290 (423)
                      ...         .|+            ...|...+....+.|..+.|..+|.+..+. +.. ....|...+..-.+. ++
T Consensus       407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d  485 (679)
T 4e6h_A          407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKD  485 (679)
T ss_dssp             HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSC
T ss_pred             HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCC
Confidence            310         132            235777777777888899999999988876 221 233444333333344 45


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          291 SEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP--SDKCVALILSACEKENQLNRALEFL  368 (423)
Q Consensus       291 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~  368 (423)
                      .+.|..+|+...+. +..+...|...+......|+.+.|..+|++.......+  ....|...+.--.+.|+.+.+..+.
T Consensus       486 ~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~  564 (679)
T 4e6h_A          486 TKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLE  564 (679)
T ss_dssp             CHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred             HHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            88999999888765 34466777788888888899999999999887754222  2456777777777889999999999


Q ss_pred             HHHHHCCCCcCHHHHHHHHHHH
Q 014507          369 IDLERDGFMVGKEASCTLAAWF  390 (423)
Q Consensus       369 ~~m~~~g~~~~~~~~~~l~~~~  390 (423)
                      +++.+.  .|+......+++-|
T Consensus       565 ~R~~~~--~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          565 KRFFEK--FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHH--STTCCHHHHHHHHT
T ss_pred             HHHHHh--CCCCcHHHHHHHHh
Confidence            988875  24433344444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.54  E-value=1e-06  Score=71.53  Aligned_cols=121  Identities=10%  Similarity=0.062  Sum_probs=70.7

Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCCh--h
Q 014507          181 GKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA-YVRAGML--D  257 (423)
Q Consensus       181 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~-~~~~~~~--~  257 (423)
                      ...|++++|...++...+... .+...|..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence            345666666666666655532 255666666666667777777777776666543 2345556566666 5566666  6


Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507          258 RGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA  304 (423)
Q Consensus       258 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  304 (423)
                      +|...+++..+.... +...+..+...|...|++++|...|+...+.
T Consensus        99 ~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            666666666654332 4555666666666666666666666666554

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.53  E-value=5e-06  Score=63.31  Aligned_cols=95  Identities=14%  Similarity=-0.016  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS  286 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  286 (423)
                      .+......|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++|...+++..+.+.. +...|..+..++.
T Consensus        15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~   92 (126)
T 4gco_A           15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHH
Confidence            34444555555555555555555555442 234445555555555555555555555555443322 3444444555555


Q ss_pred             hCCCHHHHHHHHHHHHH
Q 014507          287 MNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       287 ~~g~~~~a~~~~~~m~~  303 (423)
                      ..|++++|.+.|++..+
T Consensus        93 ~~~~~~~A~~~~~~al~  109 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQ  109 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHH
Confidence            55555555555554444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.53  E-value=6.7e-06  Score=64.76  Aligned_cols=102  Identities=13%  Similarity=-0.018  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHH
Q 014507          275 SEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILS  353 (423)
Q Consensus       275 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~  353 (423)
                      ...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|.+.|++..+.  .| +...|..+..
T Consensus        36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~  112 (151)
T 3gyz_A           36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ  112 (151)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence            3456666777777788888888887777653 236777777777788888888888888777763  33 3566777777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHCCCCcCHH
Q 014507          354 ACEKENQLNRALEFLIDLERDGFMVGKE  381 (423)
Q Consensus       354 ~~~~~g~~~~a~~~~~~m~~~g~~~~~~  381 (423)
                      ++...|++++|...|++..+.  .|+..
T Consensus       113 ~~~~lg~~~eA~~~~~~al~l--~~~~~  138 (151)
T 3gyz_A          113 CQLRLKAPLKAKECFELVIQH--SNDEK  138 (151)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CCCHH
Confidence            777888888888888777764  34443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.53  E-value=3.3e-06  Score=64.03  Aligned_cols=119  Identities=13%  Similarity=0.012  Sum_probs=90.7

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM  248 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  248 (423)
                      +...+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNP-ANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence            445677777888888888888888888877633 367778888888888888888888888888764 345778888888


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507          249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN  290 (423)
Q Consensus       249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  290 (423)
                      .+...|++++|...+++..+.... +...+..+..++.+.|+
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPD-NETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHhc
Confidence            888888888888888888776432 55666667666666554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.52  E-value=1e-06  Score=77.66  Aligned_cols=195  Identities=9%  Similarity=-0.002  Sum_probs=128.6

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVM  248 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~  248 (423)
                      +...+..+...+.+.|++++|...|++..+.... +...|..+...|.+.|++++|...+++..+.. +.+...+..+..
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            5567778888899999999999999999887433 78888999999999999999999999988764 446788889999


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 014507          249 AYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK  328 (423)
Q Consensus       249 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  328 (423)
                      ++...|++++|...|++..+.+.. +...+...+....+   ..++. -+..........+......+-. + ..|++++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~-l-~~~~~~~  153 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTR-L-IAAERER  153 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHH-H-HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHH-H-HHHHHHH
Confidence            999999999999999988764211 00011111111111   11111 1222222333444444433322 2 3688899


Q ss_pred             HHHHHHHHHHCCCCCCHHHHH-HHHHHHHHc-CCHHHHHHHHHHHHHC
Q 014507          329 AYTAFQNMRKAGLEPSDKCVA-LILSACEKE-NQLNRALEFLIDLERD  374 (423)
Q Consensus       329 a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~-g~~~~a~~~~~~m~~~  374 (423)
                      |.+.++...+  ..|+..... .+...+.+. +.++++.++|+++.+.
T Consensus       154 A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          154 ELEECQRNHE--GHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHTTTSGGGT--TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHhhhc--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            9988887765  356644333 333333333 6678899999877653

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.51  E-value=2.6e-06  Score=64.97  Aligned_cols=97  Identities=13%  Similarity=0.005  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      ...+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..+
T Consensus        16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~   93 (133)
T 2lni_A           16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence            344444555555555555555555555443211 34445555555555555555555555554432 2234444444445


Q ss_pred             HHHcCChhHHHHHHHHHHh
Q 014507          250 YVRAGMLDRGEVLLREMDA  268 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~  268 (423)
                      +.+.|++++|.+.|++..+
T Consensus        94 ~~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            5555555555555544444

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.51  E-value=5.2e-06  Score=63.23  Aligned_cols=96  Identities=10%  Similarity=-0.053  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507          241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAY  320 (423)
Q Consensus       241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  320 (423)
                      ..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~   94 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL   94 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence            34444444444444444444444444443221 33444444444444444444444444444321 12334444444444


Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 014507          321 QMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       321 ~~~g~~~~a~~~~~~m~~  338 (423)
                      ...|++++|.+.|++..+
T Consensus        95 ~~~~~~~~A~~~~~~~~~  112 (133)
T 2lni_A           95 EAMKDYTKAMDVYQKALD  112 (133)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            444444444444444443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.51  E-value=1.2e-06  Score=71.10  Aligned_cols=120  Identities=12%  Similarity=0.112  Sum_probs=75.5

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH-HHhCCCH--HH
Q 014507          217 KAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRG-YSMNGNS--EG  293 (423)
Q Consensus       217 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~~  293 (423)
                      ..|++++|...+++..+.. +.+...|..+...|...|++++|...|++..+.... +...+..+..+ +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence            4566677777777766653 345667777777777777777777777777664332 45566666666 6666776  77


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          294 AQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKA  339 (423)
Q Consensus       294 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  339 (423)
                      |...++...... +.+...+..+..+|...|++++|...|++..+.
T Consensus       100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A          100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            777777666542 224566666667777777777777777776653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.49  E-value=9.5e-06  Score=63.87  Aligned_cols=95  Identities=11%  Similarity=-0.035  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS  286 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  286 (423)
                      .+..+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|++..+.... +...|..+..+|.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHH
Confidence            34444444555555555555555555442 224444555555555555555555555555443322 3344444444555


Q ss_pred             hCCCHHHHHHHHHHHHH
Q 014507          287 MNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       287 ~~g~~~~a~~~~~~m~~  303 (423)
                      +.|++++|...|+...+
T Consensus       116 ~lg~~~eA~~~~~~al~  132 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQ  132 (151)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555544444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.47  E-value=1.3e-05  Score=69.54  Aligned_cols=187  Identities=9%  Similarity=-0.119  Sum_probs=112.9

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHH------------cCCC----C
Q 014507          182 KKMQIQNAENTLLAMKRRGFICDQVTLTVM-------VVMYSKAGNLKMAEETFEEIKL------------LGEP----L  238 (423)
Q Consensus       182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-------i~~~~~~g~~~~A~~~~~~m~~------------~g~~----~  238 (423)
                      ..++...|.+.|.+..+.... ....|..+       ...+.+.++..+++..+..-.+            .|.-    .
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            467788888888888777443 55666655       3444444444444444443333            1100    0


Q ss_pred             ----CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----H
Q 014507          239 ----DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD----A  310 (423)
Q Consensus       239 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~  310 (423)
                          -....-.+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+....   .|+    .
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~---~~d~~~~~  171 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK---WPDKFLAG  171 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG---CSCHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc---cCCcccHH
Confidence                01223345566667778888888777776644  3333555555577777888888877764443   222    2


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          311 RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS--DKCVALILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      ..+..+-.++...|++++|++.|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3556667777777888888888777764332243  234555666677778888888888777764

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.45  E-value=5.2e-06  Score=71.93  Aligned_cols=190  Identities=13%  Similarity=-0.008  Sum_probs=139.5

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCChhHHHHHHHHHHh------------CCCC-----
Q 014507          217 KAGNLKMAEETFEEIKLLGEPLDKRSYGSM-------VMAYVRAGMLDRGEVLLREMDA------------QEVY-----  272 (423)
Q Consensus       217 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~------------~~~~-----  272 (423)
                      ..++.+.|.+.|.+..+.. +-....|..+       ...+.+.++..++...+..-.+            .|.-     
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            6899999999999999874 3356788877       4555555555666555555444            2210     


Q ss_pred             ---CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 014507          273 ---VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS--DKC  347 (423)
Q Consensus       273 ---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~  347 (423)
                         --....-.+...+...|++++|.++|+.+...  .|+......+...+.+.|++++|+..|+...+.. .|.  ...
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~--~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a  173 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA--GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA  173 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT--TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence               01234556678889999999999999998865  3544466666678899999999999998554321 111  236


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC--HHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507          348 VALILSACEKENQLNRALEFLIDLERDGFMVG--KEASCTLAAWFKRLGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       348 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  410 (423)
                      +..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...+
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~  238 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH  238 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            77888899999999999999999885443253  4466678888999999999999999987643

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.44  E-value=6.2e-06  Score=74.61  Aligned_cols=87  Identities=8%  Similarity=-0.100  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507          241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAY  320 (423)
Q Consensus       241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  320 (423)
                      .+|..+..+|.+.|++++|...+++..+.... +...+..+..+|...|++++|...|++..+.. +.+...+..+..++
T Consensus       197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~  274 (336)
T 1p5q_A          197 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ  274 (336)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            44455555555555555555555555543322 44455555555555555555555555554431 12344555555555


Q ss_pred             HHcCCHHHH
Q 014507          321 QMAGQSQKA  329 (423)
Q Consensus       321 ~~~g~~~~a  329 (423)
                      ...|+.++|
T Consensus       275 ~~~~~~~~a  283 (336)
T 1p5q_A          275 QRIRRQLAR  283 (336)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            555555555

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.43  E-value=8e-06  Score=73.85  Aligned_cols=86  Identities=7%  Similarity=-0.136  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACE  356 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  356 (423)
                      .|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+...+..+...+.
T Consensus       198 ~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          198 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence            45555555555555555555555555432 2244555555555555555555555555555421 113444555555555


Q ss_pred             HcCCHHHH
Q 014507          357 KENQLNRA  364 (423)
Q Consensus       357 ~~g~~~~a  364 (423)
                      ..|+.+++
T Consensus       276 ~~~~~~~a  283 (336)
T 1p5q_A          276 RIRRQLAR  283 (336)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.39  E-value=2.4e-05  Score=57.89  Aligned_cols=95  Identities=14%  Similarity=-0.001  Sum_probs=45.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV  251 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  251 (423)
                      .+..+...+...|++++|...++........ +...+..+...+...|++++|...+++..+.. +.+...+..+..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            3444444455555555555555555443211 34444445555555555555555555544432 223444444444455


Q ss_pred             HcCChhHHHHHHHHHHh
Q 014507          252 RAGMLDRGEVLLREMDA  268 (423)
Q Consensus       252 ~~~~~~~a~~~~~~m~~  268 (423)
                      ..|++++|...+++..+
T Consensus        84 ~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HTTCHHHHHHHHHHHHT
T ss_pred             HHhhHHHHHHHHHHHHH
Confidence            55555555555544444

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.39  E-value=8.2e-07  Score=73.65  Aligned_cols=57  Identities=7%  Similarity=-0.057  Sum_probs=23.4

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          177 IHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       177 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      +......|+++++.+.|+.-.+... .....+..+...+.+.|++++|...|++..+.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~   67 (198)
T 2fbn_A           11 SSGRENLYFQGAKKSIYDYTDEEKV-QSAFDIKEEGNEFFKKNEINEAIVKYKEALDF   67 (198)
T ss_dssp             -----------CCCSGGGCCHHHHH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhhccccCchhhCCHHHHH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3333444555555544442221100 02344555566666666666666666666653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.38  E-value=5.3e-06  Score=65.19  Aligned_cols=99  Identities=18%  Similarity=0.057  Sum_probs=64.3

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507          274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILS  353 (423)
Q Consensus       274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  353 (423)
                      +...+..+...+.+.|++++|...|+...... +.+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..
T Consensus        20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~   97 (148)
T 2vgx_A           20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE   97 (148)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence            34455566666777777777777777666542 2356666677777777777777777777766532 123556666677


Q ss_pred             HHHHcCCHHHHHHHHHHHHHC
Q 014507          354 ACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       354 ~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      ++...|++++|...|++..+.
T Consensus        98 ~~~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A           98 CLLQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            777777777777777766653

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.38  E-value=2.4e-06  Score=67.19  Aligned_cols=56  Identities=14%  Similarity=0.113  Sum_probs=21.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014507          211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMD  267 (423)
Q Consensus       211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  267 (423)
                      +...+.+.|++++|...|++..... +.+...|..+..+|...|++++|...|++..
T Consensus        27 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al   82 (148)
T 2vgx_A           27 LAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGA   82 (148)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3333334444444444444433322 2233333333333444444444444444333

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.35  E-value=3.2e-05  Score=57.20  Aligned_cols=97  Identities=16%  Similarity=0.067  Sum_probs=54.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014507          205 QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRG  284 (423)
Q Consensus       205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  284 (423)
                      ...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++..+.... +...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHH
Confidence            3445555566666666666666666665543 234555555666666666666666666665554322 34455555555


Q ss_pred             HHhCCCHHHHHHHHHHHHH
Q 014507          285 YSMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       285 ~~~~g~~~~a~~~~~~m~~  303 (423)
                      +...|++++|.+.++...+
T Consensus        82 ~~~~~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLK  100 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHH
Confidence            5555555555555555554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.35  E-value=1.5e-05  Score=60.43  Aligned_cols=95  Identities=15%  Similarity=-0.009  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV  251 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  251 (423)
                      .|......+.+.|++++|...|++..+.... +...|..+..++.+.|++++|...|++..+.. +.+...|..+..++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            3444455555555555555555555554322 44555555555555555555555555555543 223445555555555


Q ss_pred             HcCChhHHHHHHHHHHh
Q 014507          252 RAGMLDRGEVLLREMDA  268 (423)
Q Consensus       252 ~~~~~~~a~~~~~~m~~  268 (423)
                      ..|++++|...|++..+
T Consensus        84 ~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           84 AVKEYASALETLDAART  100 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHH
Confidence            55555555555555544

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.34  E-value=2.3e-05  Score=59.34  Aligned_cols=26  Identities=12%  Similarity=-0.001  Sum_probs=10.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          311 RMCALLINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       311 ~~~~~li~~~~~~g~~~~a~~~~~~m  336 (423)
                      ..|..+..++...|++++|.+.|++.
T Consensus        73 ~~~~~lg~~~~~~~~~~~A~~~~~~a   98 (126)
T 3upv_A           73 RAYIRKATAQIAVKEYASALETLDAA   98 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence            33333344444444444444444433

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.34  E-value=1.6e-06  Score=71.83  Aligned_cols=132  Identities=12%  Similarity=-0.050  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCC-CC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGI-TP--------------DARMCALLINAYQMAGQSQKAYTAFQNMRKAGL  341 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  341 (423)
                      .+..+...+.+.|++++|...|++...... .|              ....|..+..+|...|++++|...++...+.. 
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence            344444455555555555555555544210 01              02566667777777777777777777776642 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH-HHHHHhcccC
Q 014507          342 EPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVE-HVLREYGLRE  410 (423)
Q Consensus       342 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~~  410 (423)
                      +.+...+..+..++...|++++|...|++..+.. +-+...+..+..++...|+.+++. ..|+.|-..+
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            2346667777777777777777777777776642 234566666777777777666666 4555554433

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.34  E-value=4.9e-05  Score=70.99  Aligned_cols=95  Identities=12%  Similarity=-0.013  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CC--CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCcC--
Q 014507          311 RMCALLINAYQMAGQSQKAYTAFQNMRKA--GL--EPS-DKCVALILSACEKENQLNRALEFLIDLERD----GFMVG--  379 (423)
Q Consensus       311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~--~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~~--  379 (423)
                      .++..+...|...|++++|..++++....  +.  .+. ...+..++..|...|++++|..++++....    +.++.  
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  215 (434)
T 4b4t_Q          136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV  215 (434)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence            34444555555555555555555544321  11  111 234455555555555555555555544321    11111  


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          380 KEASCTLAAWFKRLGVVEEVEHVLRE  405 (423)
Q Consensus       380 ~~~~~~l~~~~~~~g~~~~A~~~~~~  405 (423)
                      ...+..+...+...|++++|...|.+
T Consensus       216 ~~~~~~~g~~~~~~~~y~~A~~~~~~  241 (434)
T 4b4t_Q          216 AELDLMSGILHCEDKDYKTAFSYFFE  241 (434)
T ss_dssp             HHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            22334444444455555555554443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.31  E-value=1.3e-05  Score=58.71  Aligned_cols=98  Identities=6%  Similarity=-0.126  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPL--DKRSYGSMV  247 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~--~~~~~~~li  247 (423)
                      ...+..+...+...|++++|...+++..+.... +...|..+...+...|++++|...|++..+.. +.  +...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~   83 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA   83 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence            344455555666666666666666666555322 45555666666666666666666666665542 22  355555666


Q ss_pred             HHHHHc-CChhHHHHHHHHHHhC
Q 014507          248 MAYVRA-GMLDRGEVLLREMDAQ  269 (423)
Q Consensus       248 ~~~~~~-~~~~~a~~~~~~m~~~  269 (423)
                      .++.+. |++++|.+.+++..+.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhc
Confidence            666666 6666666666665554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.27  E-value=1.6e-05  Score=60.20  Aligned_cols=96  Identities=11%  Similarity=0.087  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC--CC----HHHHHH
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY--VG----SEVYKA  280 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~----~~~~~~  280 (423)
                      .|..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..+....  ++    ..++..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            34444444444555555555554444432 223444444444444445555555444444432110  11    334444


Q ss_pred             HHHHHHhCCCHHHHHHHHHHHHH
Q 014507          281 LLRGYSMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       281 li~~~~~~g~~~~a~~~~~~m~~  303 (423)
                      +...+.+.|++++|.+.|+...+
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHH
Confidence            44444444444444444444443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.26  E-value=3.6e-05  Score=58.97  Aligned_cols=96  Identities=10%  Similarity=-0.074  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      ...+..+...+...|++++|...|+...+.... +...|..+...+...|++++|...|++..+.. +.+...+..+..+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   86 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence            344444444445555555555555544443221 34444444444444555555555544444432 2234444444444


Q ss_pred             HHHcCChhHHHHHHHHHH
Q 014507          250 YVRAGMLDRGEVLLREMD  267 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~  267 (423)
                      +...|++++|...|++..
T Consensus        87 ~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            444444444444444443

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.26  E-value=0.0011  Score=62.92  Aligned_cols=336  Identities=8%  Similarity=-0.085  Sum_probs=200.3

Q ss_pred             hhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHH--HHHHhcCChhhhh------hhHHHHHHHHhccCC--
Q 014507           47 RSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQ--KQAISQFPRKMTK------RCKAFVKQIICVSPE--  116 (423)
Q Consensus        47 ~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~--~~~a~~~~~~m~~------~~~~~~~~ll~~~~~--  116 (423)
                      -.+.++.+..+  |+.-+.  ..|+.  ..|...+....+.+  .+.+..+|+....      .+...|...+..+..  
T Consensus        26 P~~~~e~~~~i--feral~--~~ps~--~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~   99 (493)
T 2uy1_A           26 MSKDYRSLESL--FGRCLK--KSYNL--DLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIE   99 (493)
T ss_dssp             HTTCHHHHHHH--HHHHST--TCCCH--HHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCS
T ss_pred             CCCCHHHHHHH--HHHHhc--cCCCH--HHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhch
Confidence            33667777666  776555  23543  56655544333221  2334445554432      345778888876543  


Q ss_pred             --CCCHHHHHHHHHHhcC-CChhhHHHHHHHHHh---c--------------CCchHHHHHHHHHhhcccCCCHHHHHHH
Q 014507          117 --TGNLSDLLAAWVRFMK-PRRADWLAVLKQLKL---M--------------EHPLYLQVAELALLEESFEANIRDYTKI  176 (423)
Q Consensus       117 --~g~~~~a~~~~~~~~~-p~~~~~~~ll~~~~~---~--------------~~~~~a~~~~~~~~~~~~~~~~~~~~~l  176 (423)
                        +++++.+.++|++.+. |.. .+..+...|..   .              +....|..++......-...+...|...
T Consensus       100 ~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y  178 (493)
T 2uy1_A          100 DEQTRIEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARL  178 (493)
T ss_dssp             SHHHHHHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence              4678899999999843 322 22222222222   1              1111222222222211111234456555


Q ss_pred             HHHHHcc--CC-----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          177 IHGYGKK--MQ-----IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       177 i~~~~~~--~~-----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      +..-...  +-     .+.+..+|+++.... +.+...|-..+..+.+.|+.++|..+|++....  +.+...+.    .
T Consensus       179 ~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~----~  251 (493)
T 2uy1_A          179 IDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSL----Y  251 (493)
T ss_dssp             HHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHH----H
T ss_pred             HHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHH----H
Confidence            5543221  11     345778899988763 346888888888899999999999999999987  33333332    2


Q ss_pred             HHHcCChhHHHHHHHHHHhCC---------C---CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014507          250 YVRAGMLDRGEVLLREMDAQE---------V---YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLI  317 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~~---------~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li  317 (423)
                      |+...+.++.   ++.+.+.-         .   ......|...+....+.++.+.|..+|+.. ... ..+...|-...
T Consensus       252 y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A  326 (493)
T 2uy1_A          252 YGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCA  326 (493)
T ss_dssp             HHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHH
T ss_pred             HHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHH
Confidence            3332222222   22322210         0   112346777777777888999999999999 321 22444454322


Q ss_pred             HHHHH-cCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCC
Q 014507          318 NAYQM-AGQSQKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGV  395 (423)
Q Consensus       318 ~~~~~-~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~  395 (423)
                      ..-.. .++.+.|..+|+...+.-  |+ ...+...+....+.|+.+.|..+|+++.     .....|...++.=...|+
T Consensus       327 ~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~  399 (493)
T 2uy1_A          327 FIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGS  399 (493)
T ss_dssp             HHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCC
Confidence            22222 336999999999988742  33 4455666777778999999999999962     357788888887778899


Q ss_pred             HHHHHHHHHHhcc
Q 014507          396 VEEVEHVLREYGL  408 (423)
Q Consensus       396 ~~~A~~~~~~m~~  408 (423)
                      .+.+.+++++..+
T Consensus       400 ~~~~r~v~~~~~~  412 (493)
T 2uy1_A          400 MELFRELVDQKMD  412 (493)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999998887764

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.26  E-value=3.3e-05  Score=58.77  Aligned_cols=59  Identities=10%  Similarity=0.068  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014507          208 LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMD  267 (423)
Q Consensus       208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  267 (423)
                      +..+...+.+.|++++|+..|++..+.. +-+...|..+..+|.+.|++++|...+++..
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            3334444444444444444444444432 2233344444444444444444444444433

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.26  E-value=2.8e-05  Score=59.15  Aligned_cols=59  Identities=8%  Similarity=-0.023  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507          243 YGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQ  302 (423)
Q Consensus       243 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  302 (423)
                      +..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|++.+++..
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al   69 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAV   69 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHH
Confidence            444455555555555555555555543322 34445555555555555555555554443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.25  E-value=1.7e-05  Score=60.01  Aligned_cols=108  Identities=13%  Similarity=0.053  Sum_probs=58.9

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC--CCC----HHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGL--EPS----DKCVAL  350 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~  350 (423)
                      .+..+...+...|++++|...++...... +.+...+..+...+...|++++|...+++..+...  .++    ..++..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            44555555556666666666666555432 22455555666666666666666666666554210  111    445556


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHH
Q 014507          351 ILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLA  387 (423)
Q Consensus       351 li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~  387 (423)
                      +...+...|++++|.+.+++..+.  .|+......+.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~  119 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ  119 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence            666666666666666666666553  23444444333

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.24  E-value=0.00061  Score=60.66  Aligned_cols=99  Identities=7%  Similarity=-0.092  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-hhHHHHH
Q 014507          186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG--NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM-LDRGEVL  262 (423)
Q Consensus       186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~-~~~a~~~  262 (423)
                      +++++.+++.+.....+ +..+|+.-...+.+.+  .+++++.+++++.+.. +.+..+|+.-...+...|. ++++++.
T Consensus        90 l~~EL~~~~~~L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~  167 (331)
T 3dss_A           90 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF  167 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence            44555555555554333 5555555555555555  2556666666665554 3355555555555555555 3555666


Q ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHh
Q 014507          263 LREMDAQEVYVGSEVYKALLRGYSM  287 (423)
Q Consensus       263 ~~~m~~~~~~p~~~~~~~li~~~~~  287 (423)
                      ++++.+..+. |...|+.....+.+
T Consensus       168 ~~~~I~~~p~-N~SAW~~R~~ll~~  191 (331)
T 3dss_A          168 TDSLITRNFS-NYSSWHYRSCLLPQ  191 (331)
T ss_dssp             HHHHHHHCSC-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCC-CHHHHHHHHHHHHH
Confidence            6666555444 55555544444333

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.23  E-value=9.4e-05  Score=69.05  Aligned_cols=165  Identities=9%  Similarity=-0.066  Sum_probs=73.2

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC-HHH
Q 014507          173 YTKIIHGYGKKMQIQNAENTLLAMKRR-GFICDQV----TLTVMVVMYSKAGNLKMAEETFEEIKL----LGEPLD-KRS  242 (423)
Q Consensus       173 ~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~----~g~~~~-~~~  242 (423)
                      +..+...|.+.|++++|.+.+..+.+. +-.++..    +.+.+-..+...|+++.|..++++...    .+..+. ..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            444555555556666665555554432 1111111    112222222334555555555555432    121222 234


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhC--CC--CC-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CC-CC-C--HH
Q 014507          243 YGSMVMAYVRAGMLDRGEVLLREMDAQ--EV--YV-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA--GI-TP-D--AR  311 (423)
Q Consensus       243 ~~~li~~~~~~~~~~~a~~~~~~m~~~--~~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~-~p-~--~~  311 (423)
                      +..+...|...|++++|..+++++...  +.  .+ ...++..++..|...|++++|..++++....  .+ .| .  ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            455555555555555555555554431  11  11 1234555555555555555555555544321  01 11 1  12


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          312 MCALLINAYQMAGQSQKAYTAFQNMR  337 (423)
Q Consensus       312 ~~~~li~~~~~~g~~~~a~~~~~~m~  337 (423)
                      .+..+...+...|++++|...|.+..
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            34444444455555555555555443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.23  E-value=2.5e-05  Score=60.66  Aligned_cols=92  Identities=13%  Similarity=0.003  Sum_probs=44.9

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507          175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG  254 (423)
Q Consensus       175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~  254 (423)
                      .+...+.+.|++++|...|+........ +...|..+..+|.+.|++++|...|++..+.. +.+...+..+..++...|
T Consensus        23 ~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g  100 (142)
T 2xcb_A           23 ALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQLG  100 (142)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence            3444444555555555555555444222 44445555555555555555555555554443 223344444555555555


Q ss_pred             ChhHHHHHHHHHHh
Q 014507          255 MLDRGEVLLREMDA  268 (423)
Q Consensus       255 ~~~~a~~~~~~m~~  268 (423)
                      ++++|...|++..+
T Consensus       101 ~~~~A~~~~~~al~  114 (142)
T 2xcb_A          101 DLDGAESGFYSARA  114 (142)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555554443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.23  E-value=4.7e-05  Score=58.36  Aligned_cols=96  Identities=7%  Similarity=-0.096  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014507          240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINA  319 (423)
Q Consensus       240 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  319 (423)
                      ...+..+...+...|++++|...|++..+.... +...+..+..++...|++++|...++...... +.+...|..+..+
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   86 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   86 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence            344444444444444444444444444443221 33444444444444555555555554444332 1234445555555


Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 014507          320 YQMAGQSQKAYTAFQNMR  337 (423)
Q Consensus       320 ~~~~g~~~~a~~~~~~m~  337 (423)
                      +...|++++|...|++..
T Consensus        87 ~~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHH
Confidence            555555555555555444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.23  E-value=7.9e-05  Score=57.74  Aligned_cols=100  Identities=14%  Similarity=-0.034  Sum_probs=69.9

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014507          168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICD----QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSY  243 (423)
Q Consensus       168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~  243 (423)
                      .+...+..+...+...|++++|...|++..+..  |+    ...|..+...|...|++++|...+++..+.. +.+...+
T Consensus        26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  102 (148)
T 2dba_A           26 SSVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKAL  102 (148)
T ss_dssp             CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHH
Confidence            355667777777777788888888887777653  34    5666677777777777777777777776653 3356667


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhCC
Q 014507          244 GSMVMAYVRAGMLDRGEVLLREMDAQE  270 (423)
Q Consensus       244 ~~li~~~~~~~~~~~a~~~~~~m~~~~  270 (423)
                      ..+..++...|++++|...|++..+..
T Consensus       103 ~~~a~~~~~~~~~~~A~~~~~~al~~~  129 (148)
T 2dba_A          103 YRRSQALEKLGRLDQAVLDLQRCVSLE  129 (148)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence            777777777777777777777776643

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.21  E-value=2.9e-05  Score=60.27  Aligned_cols=92  Identities=13%  Similarity=0.106  Sum_probs=42.9

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Q 014507          209 TVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN  288 (423)
Q Consensus       209 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  288 (423)
                      ..+...+.+.|++++|...|++..... +.+...|..+..++.+.|++++|...|++..+.+.. +...+..+..+|...
T Consensus        22 ~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~   99 (142)
T 2xcb_A           22 YALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQL   99 (142)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHc
Confidence            334444445555555555555554432 224444444555555555555555555554443322 333444444444444


Q ss_pred             CCHHHHHHHHHHHH
Q 014507          289 GNSEGAQRVFEAIQ  302 (423)
Q Consensus       289 g~~~~a~~~~~~m~  302 (423)
                      |++++|...|+...
T Consensus       100 g~~~~A~~~~~~al  113 (142)
T 2xcb_A          100 GDLDGAESGFYSAR  113 (142)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHH
Confidence            44444444444443

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.20  E-value=3.7e-05  Score=61.29  Aligned_cols=98  Identities=10%  Similarity=0.037  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      ...+..+...+.+.|++++|+..|++..+.... +...|..+...|.+.|++++|+..|++..+.. +.+...|..+..+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            445555666666666666666666666665322 55666666666666666666666666666653 2345566666666


Q ss_pred             HHHcCChhHHHHHHHHHHhC
Q 014507          250 YVRAGMLDRGEVLLREMDAQ  269 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~  269 (423)
                      |...|++++|...|++..+.
T Consensus        89 ~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHh
Confidence            66666666666666666553

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.19  E-value=6e-05  Score=60.04  Aligned_cols=95  Identities=13%  Similarity=-0.052  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACE  356 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  356 (423)
                      .+..+...+.+.|++++|.+.|++..+.. +.+...|..+..+|...|++++|...|++..+.. +-+...|..+...+.
T Consensus        13 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           13 KLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            44444444555555555555555444431 1244445555555555555555555555554422 112444555555555


Q ss_pred             HcCCHHHHHHHHHHHHH
Q 014507          357 KENQLNRALEFLIDLER  373 (423)
Q Consensus       357 ~~g~~~~a~~~~~~m~~  373 (423)
                      ..|++++|...|++..+
T Consensus        91 ~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHH
Confidence            55555555555555544

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.15  E-value=2.5e-05  Score=57.25  Aligned_cols=17  Identities=29%  Similarity=0.366  Sum_probs=6.3

Q ss_pred             HHHcCCHHHHHHHHHHH
Q 014507          215 YSKAGNLKMAEETFEEI  231 (423)
Q Consensus       215 ~~~~g~~~~A~~~~~~m  231 (423)
                      +...|++++|...|++.
T Consensus        16 ~~~~~~~~~A~~~~~~a   32 (112)
T 2kck_A           16 QYDAGNYTESIDLFEKA   32 (112)
T ss_dssp             HHSSCCHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHH
Confidence            33333333333333333

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.15  E-value=0.00014  Score=56.25  Aligned_cols=97  Identities=15%  Similarity=-0.028  Sum_probs=54.0

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014507          274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD----ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVA  349 (423)
Q Consensus       274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  349 (423)
                      +...+..+...+...|++++|.+.|++..+.  .|+    ...|..+..+|...|++++|.+.+++..+.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            3445555555555666666666666655543  333    4455555556666666666666666555431 12345555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          350 LILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       350 ~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                      .+...+...|++++|...+++..+
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            555566666666666666666554

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.14  E-value=0.0039  Score=55.47  Aligned_cols=133  Identities=6%  Similarity=-0.123  Sum_probs=90.2

Q ss_pred             CCHHHHHHHHHHhc--CCCh-hhHHHHHHHHHhcCC----------chHHHHHHHHHhhcccCCCHHHHHHHHHHHHccC
Q 014507          118 GNLSDLLAAWVRFM--KPRR-ADWLAVLKQLKLMEH----------PLYLQVAELALLEESFEANIRDYTKIIHGYGKKM  184 (423)
Q Consensus       118 g~~~~a~~~~~~~~--~p~~-~~~~~ll~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  184 (423)
                      ...++|++.++.++  .|+. .+|+.=-..+...+.          .+.+..+...++... +.+..+|+.-...+.+.+
T Consensus        44 e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~  122 (331)
T 3dss_A           44 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLP  122 (331)
T ss_dssp             CCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCS
T ss_pred             CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccC
Confidence            33457899888874  4544 334443223322222          345566666666544 457777877666676767


Q ss_pred             --CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507          185 --QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN-LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA  253 (423)
Q Consensus       185 --~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  253 (423)
                        .+++++.+++.+.+.... |...|+.-.-.+...|. ++++++.++++.+.. +-|...|+.....+.+.
T Consensus       123 ~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          123 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHh
Confidence              488999999999887655 77888877777778887 588899998888876 44777887776666554

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.12  E-value=2.6e-05  Score=61.39  Aligned_cols=129  Identities=17%  Similarity=0.118  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCC-CHHH
Q 014507          208 LTVMVVMYSKAGNLKMAEETFEEIKLLGE-PLD----KRSYGSMVMAYVRAGMLDRGEVLLREMDAQ----EVYV-GSEV  277 (423)
Q Consensus       208 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~  277 (423)
                      +..+...+...|++++|...+++..+... .++    ..++..+...+...|++++|...+++..+.    +..+ ...+
T Consensus        12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   91 (164)
T 3ro3_A           12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS   91 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            34444444455555555555544433110 001    123444444444445555554444443321    0000 1223


Q ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          278 YKALLRGYSMNGNSEGAQRVFEAIQFA----GITP-DARMCALLINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       278 ~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m  336 (423)
                      +..+...+...|++++|.+.+++....    +..+ ....+..+...+...|++++|.+.+++.
T Consensus        92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  155 (164)
T 3ro3_A           92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH  155 (164)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence            444444444555555555544443321    1000 1223344444444455555555544443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.10  E-value=3.4e-05  Score=60.69  Aligned_cols=95  Identities=16%  Similarity=0.141  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CC----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCCC-CHH
Q 014507          242 SYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VG----SEVYKALLRGYSMNGNSEGAQRVFEAIQFA----GITP-DAR  311 (423)
Q Consensus       242 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~  311 (423)
                      ++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|.+.+++....    +..+ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4555555566666666666666655432110 01    124445555555555555555555544321    0000 122


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          312 MCALLINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       312 ~~~~li~~~~~~g~~~~a~~~~~~m  336 (423)
                      .+..+...+...|++++|.+.+++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a  115 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKH  115 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            3444444445555555555554444

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.07  E-value=5.7e-05  Score=56.83  Aligned_cols=94  Identities=10%  Similarity=0.005  Sum_probs=57.6

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507          174 TKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA  253 (423)
Q Consensus       174 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  253 (423)
                      ..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..|++..+.. +-+...+..+..++...
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            34455566666666666666666665332 55666666666666666666666666666653 23455666666666666


Q ss_pred             CChhHHHHHHHHHHhC
Q 014507          254 GMLDRGEVLLREMDAQ  269 (423)
Q Consensus       254 ~~~~~a~~~~~~m~~~  269 (423)
                      |++++|...+++..+.
T Consensus        99 g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           99 HNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            6666666666666543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.05  E-value=5.4e-05  Score=56.98  Aligned_cols=90  Identities=17%  Similarity=0.073  Sum_probs=45.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507          211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN  290 (423)
Q Consensus       211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  290 (423)
                      +...+.+.|++++|...|++..+.. +.+...|..+..++...|++++|...|++..+.... +...+..+..++.+.|+
T Consensus        23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~  100 (121)
T 1hxi_A           23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN  100 (121)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            3444455555555555555555442 224445555555555555555555555555543322 34444445555555555


Q ss_pred             HHHHHHHHHHHH
Q 014507          291 SEGAQRVFEAIQ  302 (423)
Q Consensus       291 ~~~a~~~~~~m~  302 (423)
                      +++|...+++..
T Consensus       101 ~~~A~~~~~~al  112 (121)
T 1hxi_A          101 ANAALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555555444

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.98  E-value=0.00014  Score=68.66  Aligned_cols=123  Identities=10%  Similarity=-0.009  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC--------------HHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 014507          240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVG--------------SEVYKALLRGYSMNGNSEGAQRVFEAIQFAG  305 (423)
Q Consensus       240 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  305 (423)
                      ...|..+...+.+.|++++|...|++..+......              ...|..+..+|.+.|++++|...+++..+..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            45677777778888888888888887776432211              4566666666666666666666666666542


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHH
Q 014507          306 ITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRAL  365 (423)
Q Consensus       306 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~  365 (423)
                       +.+...|..+..+|...|++++|...|++..+.  .| +...+..+...+.+.++.+++.
T Consensus       348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHH
T ss_pred             -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHH
Confidence             225566666666666666666666666666652  33 2345555555555555555443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.97  E-value=2.9e-05  Score=73.76  Aligned_cols=121  Identities=10%  Similarity=-0.082  Sum_probs=90.4

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507          176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM  255 (423)
Q Consensus       176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~  255 (423)
                      +...+.+.|++++|.+.+++..+.... +...|..+..+|.+.|++++|.+.+++..+.. +.+..+|..+..+|...|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            445566788999999999988877433 67888889999999999999999999988874 4467788888999999999


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHHHHHHH--HHhCCCHHHHHHHHH
Q 014507          256 LDRGEVLLREMDAQEVYVGSEVYKALLRG--YSMNGNSEGAQRVFE  299 (423)
Q Consensus       256 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~  299 (423)
                      +++|.+.|++..+.... +...+..+..+  +.+.|++++|.+.++
T Consensus        90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999988875432 33344445444  778888999998887

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.97  E-value=0.00013  Score=68.95  Aligned_cols=87  Identities=9%  Similarity=0.036  Sum_probs=45.4

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 014507          241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINA  319 (423)
Q Consensus       241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~  319 (423)
                      ..|..+..+|.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.  .| +...+..+..+
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~  394 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMC  394 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            44555555555555555555555555554322 4455555555555566666666655555543  22 33445555555


Q ss_pred             HHHcCCHHHHH
Q 014507          320 YQMAGQSQKAY  330 (423)
Q Consensus       320 ~~~~g~~~~a~  330 (423)
                      +.+.|+.+++.
T Consensus       395 ~~~~~~~~~a~  405 (457)
T 1kt0_A          395 QKKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            55555555544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.96  E-value=2.7e-05  Score=73.94  Aligned_cols=121  Identities=15%  Similarity=0.052  Sum_probs=95.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC
Q 014507          211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN  290 (423)
Q Consensus       211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  290 (423)
                      +...+.+.|++++|.+.|++..+.. +.+..+|..+..+|.+.|++++|...+++..+.... +...+..+..+|.+.|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCC
Confidence            3445667899999999999998874 446889999999999999999999999999987544 67899999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 014507          291 SEGAQRVFEAIQFAGITPDARMCALLINA--YQMAGQSQKAYTAFQ  334 (423)
Q Consensus       291 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~  334 (423)
                      +++|.+.|++..+.. +.+...+..+..+  +.+.|++++|.+.++
T Consensus        90 ~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            999999999988753 1234455555555  888899999999988

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.94  E-value=0.00037  Score=52.50  Aligned_cols=22  Identities=14%  Similarity=0.225  Sum_probs=8.7

Q ss_pred             HHHHHHHcCChhHHHHHHHHHH
Q 014507          246 MVMAYVRAGMLDRGEVLLREMD  267 (423)
Q Consensus       246 li~~~~~~~~~~~a~~~~~~m~  267 (423)
                      +..++.+.|++++|...|++..
T Consensus        45 lg~~~~~~~~~~~A~~~~~~~~   66 (129)
T 2xev_A           45 LGESYYATRNFQLAEAQFRDLV   66 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHH
Confidence            3333334444444444443333

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.93  E-value=0.00059  Score=51.34  Aligned_cols=94  Identities=14%  Similarity=0.094  Sum_probs=69.4

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 014507          175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQ---VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD---KRSYGSMVM  248 (423)
Q Consensus       175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~---~~~~~~li~  248 (423)
                      .+...+...|++++|...|+...+.... +.   ..+..+...+.+.|++++|...|++..+.. +.+   ..++..+..
T Consensus         7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~   84 (129)
T 2xev_A            7 NVAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHH
Confidence            3556677888888888888888776432 22   466777888888888888888888887754 223   566777778


Q ss_pred             HHHHcCChhHHHHHHHHHHhCC
Q 014507          249 AYVRAGMLDRGEVLLREMDAQE  270 (423)
Q Consensus       249 ~~~~~~~~~~a~~~~~~m~~~~  270 (423)
                      ++...|++++|...|+++.+..
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~~  106 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQY  106 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC
Confidence            8888888888888888877653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.91  E-value=0.00019  Score=65.61  Aligned_cols=27  Identities=19%  Similarity=0.230  Sum_probs=17.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          207 TLTVMVVMYSKAGNLKMAEETFEEIKL  233 (423)
Q Consensus       207 ~~~~li~~~~~~g~~~~A~~~~~~m~~  233 (423)
                      .+..+...+.+.|++++|...|++..+
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~  251 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLR  251 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            355556666677777777777766654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.88  E-value=0.00016  Score=66.07  Aligned_cols=138  Identities=12%  Similarity=-0.016  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY  250 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  250 (423)
                      ..+..+...+.+.|++++|.+.|++..+.-    ....        .....+++.       +.. +.+..+|..+..+|
T Consensus       224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~----~~~~--------~~~~~~~~~-------~~~-~~~~~~~~nla~~~  283 (370)
T 1ihg_A          224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYV----EGSR--------AAAEDADGA-------KLQ-PVALSCVLNIGACK  283 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH----HHHH--------HHSCHHHHG-------GGH-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----hcCc--------cccChHHHH-------HHH-HHHHHHHHHHHHHH
Confidence            346777888889999999999998887630    0000        000011100       000 11233444455555


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507          251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAY  330 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  330 (423)
                      .+.|++++|...+++..+.... +...+..+..+|...|++++|.+.|++..+.. +.+...+..+..++...++.+++.
T Consensus       284 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          284 LKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5555555555555555543322 34455555555555555555555555544431 113444444445555444444443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.87  E-value=0.00022  Score=56.58  Aligned_cols=61  Identities=11%  Similarity=0.067  Sum_probs=31.8

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      .|..+..+|.+.|++++|...++...... +.+...|..+..+|...|++++|...|+...+
T Consensus        65 ~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  125 (162)
T 3rkv_A           65 LYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR  125 (162)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence            44555555555555555555555554432 22444555555555555555555555555544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.84  E-value=0.00011  Score=69.48  Aligned_cols=127  Identities=7%  Similarity=-0.054  Sum_probs=87.4

Q ss_pred             HHHhCCCHHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHH
Q 014507          284 GYSMNGNSEGAQRVFEAIQFA---GITP----DARMCALLINAYQMAGQSQKAYTAFQNMRK-----AG-LEPS-DKCVA  349 (423)
Q Consensus       284 ~~~~~g~~~~a~~~~~~m~~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~p~-~~~~~  349 (423)
                      .+...|++++|+.++++..+.   -+-|    ...+++.+..+|...|++++|..++++..+     .| -.|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            355678888888888776542   1112    245688888888888888888888887654     22 2343 45688


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHC-----C--CCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccC
Q 014507          350 LILSACEKENQLNRALEFLIDLERD-----G--FMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       350 ~li~~~~~~g~~~~a~~~~~~m~~~-----g--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~  410 (423)
                      .|...|...|++++|+.++++..+-     |  .+....+.+.+-.++...|.+++|+.+|+++++.-
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888888876532     2  11224455667777778888888888888887643

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.83  E-value=5.7e-05  Score=56.35  Aligned_cols=85  Identities=11%  Similarity=0.026  Sum_probs=41.0

Q ss_pred             cCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 014507          253 AGMLDRGEVLLREMDAQEV--YVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAY  330 (423)
Q Consensus       253 ~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  330 (423)
                      .|++++|...|++..+.+.  +-+...+..+...|.+.|++++|...|++..+.. +-+...+..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence            3455555555555555421  1123445555555555555555555555555432 123445555555555555555555


Q ss_pred             HHHHHHHH
Q 014507          331 TAFQNMRK  338 (423)
Q Consensus       331 ~~~~~m~~  338 (423)
                      +.+++..+
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.83  E-value=4.9e-05  Score=56.70  Aligned_cols=84  Identities=14%  Similarity=-0.033  Sum_probs=38.5

Q ss_pred             CCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHH
Q 014507          184 MQIQNAENTLLAMKRRG--FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEV  261 (423)
Q Consensus       184 ~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~  261 (423)
                      |++++|+..|++..+.+  -+-+...+..+...|...|++++|...|++..+.. +-+..++..+..++...|++++|..
T Consensus         4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHHH
Confidence            44455555555554432  11123344445555555555555555555554443 2234444455555555555555555


Q ss_pred             HHHHHHh
Q 014507          262 LLREMDA  268 (423)
Q Consensus       262 ~~~~m~~  268 (423)
                      .+++..+
T Consensus        83 ~~~~al~   89 (117)
T 3k9i_A           83 LLLKIIA   89 (117)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554443

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.83  E-value=0.00033  Score=55.52  Aligned_cols=63  Identities=14%  Similarity=0.099  Sum_probs=40.6

Q ss_pred             HHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC
Q 014507          241 RSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFA  304 (423)
Q Consensus       241 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  304 (423)
                      ..|..+..+|.+.|++++|...+++..+.+.. +...|..+..+|...|++++|...|+.....
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            45666666666666666666666666665432 5566666666677777777777776666653

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.73  E-value=0.00015  Score=65.49  Aligned_cols=146  Identities=12%  Similarity=0.004  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY  250 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  250 (423)
                      ..+..+...+.+.|++++|...|++..+..  |+...       +...++.+++...+.          ...|..+..+|
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~  240 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACL  240 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHH
Confidence            456677788888899999999888877652  23221       112233333322221          13677777888


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH-HHHcCCHHH
Q 014507          251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINA-YQMAGQSQK  328 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~-~~~~g~~~~  328 (423)
                      .+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.  .| +...+..+... ....+..++
T Consensus       241 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          241 IKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------------
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHH
Confidence            8888888888888888775432 6778888888888888888888888887653  34 34444444444 234566777


Q ss_pred             HHHHHHHHHH
Q 014507          329 AYTAFQNMRK  338 (423)
Q Consensus       329 a~~~~~~m~~  338 (423)
                      +.+.|..|..
T Consensus       318 a~~~~~~~l~  327 (338)
T 2if4_A          318 QKEMYKGIFK  327 (338)
T ss_dssp             ----------
T ss_pred             HHHHHHHhhC
Confidence            7778887765

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.71  E-value=4.3e-05  Score=56.02  Aligned_cols=93  Identities=13%  Similarity=-0.025  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-------HHH
Q 014507          310 ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVG-------KEA  382 (423)
Q Consensus       310 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-------~~~  382 (423)
                      ...|..+...+...|++++|.+.|++..+.. +.+...+..+..++...|++++|...+++..+.  .|+       ...
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~   80 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSKL   80 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHHH
Confidence            4455556666666666666666666665532 224556666666666667777777766666653  232       344


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Q 014507          383 SCTLAAWFKRLGVVEEVEHVLRE  405 (423)
Q Consensus       383 ~~~l~~~~~~~g~~~~A~~~~~~  405 (423)
                      +..+..++...|+.++|.+.+++
T Consensus        81 ~~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           81 QYRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHHhHhhhHhHHHH
Confidence            45555555555555555544443

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.69  E-value=0.0041  Score=60.15  Aligned_cols=171  Identities=6%  Similarity=-0.122  Sum_probs=118.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507          184 MQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN----------LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA  253 (423)
Q Consensus       184 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  253 (423)
                      ..-++|++.++++.+.... +...|+.--..+...|+          ++++++.++++.+.. +-+..+|+.-...+.+.
T Consensus        43 ~~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l  120 (567)
T 1dce_A           43 ELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL  120 (567)
T ss_dssp             CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            3346778888888877544 56667666555655555          788888888888765 34677777777777777


Q ss_pred             C--ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-------
Q 014507          254 G--MLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG-NSEGAQRVFEAIQFAGITPDARMCALLINAYQMA-------  323 (423)
Q Consensus       254 ~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-------  323 (423)
                      +  +++++.+.++++.+.+.. +..+|+.-...+.+.| ..+++.+.++++.+.. .-+...|+.....+.+.       
T Consensus       121 ~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~  198 (567)
T 1dce_A          121 PEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSG  198 (567)
T ss_dssp             SSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSS
T ss_pred             ccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccc
Confidence            7  568888888888887665 7777777777777777 7788888887777653 33677777776666553       


Q ss_pred             -------CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCC
Q 014507          324 -------GQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQ  360 (423)
Q Consensus       324 -------g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~  360 (423)
                             +.++++++.+++....  .| |...|..+-..+.+.++
T Consensus       199 ~~~~~~~~~~~eel~~~~~ai~~--~P~~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          199 PQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             SCCSSCHHHHHHHHHHHHHHHHH--CSSCSHHHHHHHHHHSCCCC
T ss_pred             ccccccHHHHHHHHHHHHHHHhh--CCCCccHHHHHHHHHhcCCC
Confidence                   4467777777777663  34 45666666656655554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.69  E-value=0.0017  Score=49.95  Aligned_cols=14  Identities=14%  Similarity=0.273  Sum_probs=5.5

Q ss_pred             CCHHHHHHHHHHHH
Q 014507          324 GQSQKAYTAFQNMR  337 (423)
Q Consensus       324 g~~~~a~~~~~~m~  337 (423)
                      +++++|.++|++..
T Consensus       111 ~d~~~A~~~~~~Aa  124 (138)
T 1klx_A          111 KNEKQAVKTFEKAC  124 (138)
T ss_dssp             CCHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHH
Confidence            33333333333333

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.69  E-value=0.00074  Score=51.96  Aligned_cols=111  Identities=10%  Similarity=-0.048  Sum_probs=77.6

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHH
Q 014507          184 MQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR----AGMLDRG  259 (423)
Q Consensus       184 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a  259 (423)
                      +++++|.+.|++..+.|. |+..    +...|...+..++|.++|++..+.|   +...+..|...|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            456777777777777762 2332    5566666666777777777777754   56677777777776    6777788


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHh----CCCHHHHHHHHHHHHHCC
Q 014507          260 EVLLREMDAQEVYVGSEVYKALLRGYSM----NGNSEGAQRVFEAIQFAG  305 (423)
Q Consensus       260 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g  305 (423)
                      ...|++..+.|   +...+..|-..|..    .++.++|.+.|++..+.|
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            88887777765   45567777777777    777888888887777665

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.66  E-value=0.001  Score=52.00  Aligned_cols=96  Identities=7%  Similarity=-0.105  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFIC------DQ-----VTLTVMVVMYSKAGNLKMAEETFEEIKLL-----G  235 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p------~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g  235 (423)
                      .+......+.+.|++++|+..|++..+.....      +.     ..|..+..++.+.|++++|+..+++..+.     .
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            34455666777778888888777776653221      12     25666666666666666666666666553     0


Q ss_pred             CCCC-HHHH----HHHHHHHHHcCChhHHHHHHHHHH
Q 014507          236 EPLD-KRSY----GSMVMAYVRAGMLDRGEVLLREMD  267 (423)
Q Consensus       236 ~~~~-~~~~----~~li~~~~~~~~~~~a~~~~~~m~  267 (423)
                      +.|+ ...|    .....++...|++++|+..|++..
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            1222 2344    455555555555555555555543

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.65  E-value=0.00018  Score=64.91  Aligned_cols=148  Identities=10%  Similarity=-0.010  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 014507          205 QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRG  284 (423)
Q Consensus       205 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  284 (423)
                      ...+..+...+.+.|++++|...|++....  .|+...       +...++.+++...+   .       ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHH
Confidence            345667788888999999999999998765  344332       12223333333222   1       1378889999


Q ss_pred             HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHH-HHHcCCHH
Q 014507          285 YSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS-DKCVALILSA-CEKENQLN  362 (423)
Q Consensus       285 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~g~~~  362 (423)
                      |.+.|++++|...++...+.. +.+...|..+..+|...|++++|...|++..+  +.|+ ...+..+... ....+..+
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~--l~p~~~~a~~~L~~l~~~~~~~~~  316 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQK--YAPDDKAIRRELRALAEQEKALYQ  316 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988753 34788999999999999999999999999876  3454 3444444444 23456677


Q ss_pred             HHHHHHHHHHHC
Q 014507          363 RALEFLIDLERD  374 (423)
Q Consensus       363 ~a~~~~~~m~~~  374 (423)
                      .+...|++|...
T Consensus       317 ~a~~~~~~~l~~  328 (338)
T 2if4_A          317 KQKEMYKGIFKG  328 (338)
T ss_dssp             ------------
T ss_pred             HHHHHHHHhhCC
Confidence            888899888764

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.64  E-value=0.00039  Score=65.82  Aligned_cols=62  Identities=8%  Similarity=-0.046  Sum_probs=27.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          312 MCALLINAYQMAGQSQKAYTAFQNMRK-----AGL-EPS-DKCVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       312 ~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                      +++.|...|...|++++|..++++..+     .|- .|+ ..+...+-.++...+.+++|+.+++++.+
T Consensus       395 ~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          395 AVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555555555444332     121 122 22233333444445555555555555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.63  E-value=0.003  Score=49.35  Aligned_cols=96  Identities=10%  Similarity=-0.011  Sum_probs=53.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-----CH-----HHHHHHHHHHHHcCChhHHHHHHHHHHhC-----
Q 014507          206 VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEP-L-----DK-----RSYGSMVMAYVRAGMLDRGEVLLREMDAQ-----  269 (423)
Q Consensus       206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-~-----~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----  269 (423)
                      ..+......+.+.|++++|...|++..+.... |     +.     ..|..+..++.+.|++++|+..+++..+.     
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~   91 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   91 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence            34556667777888888888888888774311 0     12     25555555666666666666665555543     


Q ss_pred             CCCC-CHHHH----HHHHHHHHhCCCHHHHHHHHHHH
Q 014507          270 EVYV-GSEVY----KALLRGYSMNGNSEGAQRVFEAI  301 (423)
Q Consensus       270 ~~~p-~~~~~----~~li~~~~~~g~~~~a~~~~~~m  301 (423)
                      .+.| +...|    .....++...|++++|+..|++.
T Consensus        92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA  128 (159)
T 2hr2_A           92 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV  128 (159)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence            0022 22333    44444444455555555554444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.57  E-value=0.0078  Score=58.19  Aligned_cols=174  Identities=8%  Similarity=-0.141  Sum_probs=138.3

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCC
Q 014507          220 NLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM----------LDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNG  289 (423)
Q Consensus       220 ~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  289 (423)
                      ..++|++.++++.+.. +-+..+|+.--.++...|+          ++++.+.++++.+...+ +..+|+.-...+.+.+
T Consensus        44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence            3578899999999875 3356778777777777776          89999999999998766 7888998888889999


Q ss_pred             --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--------
Q 014507          290 --NSEGAQRVFEAIQFAGITPDARMCALLINAYQMAG-QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKE--------  358 (423)
Q Consensus       290 --~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------  358 (423)
                        +++++++.++++.+.. +-+...|+.-.-++.+.| .++++++.++++.+.. .-|...|+.....+.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence              7799999999999864 448899999888888889 8999999999998754 33678888877777663        


Q ss_pred             ------CCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHH
Q 014507          359 ------NQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEE  398 (423)
Q Consensus       359 ------g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~  398 (423)
                            +.++++.+.+++..... +-|...|.-+-..+.+.|+.++
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                  45788999998888752 3467778877777777776443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.57  E-value=0.00013  Score=53.37  Aligned_cols=90  Identities=10%  Similarity=-0.050  Sum_probs=56.5

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLD-------KR  241 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~-------~~  241 (423)
                      +...+..+...+...|++++|.+.|++..+.... +...|..+..++.+.|++++|...|++..+..  |+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence            3445666667777777777777777777665332 56667777777777777777777777776643  33       34


Q ss_pred             HHHHHHHHHHHcCChhHHHH
Q 014507          242 SYGSMVMAYVRAGMLDRGEV  261 (423)
Q Consensus       242 ~~~~li~~~~~~~~~~~a~~  261 (423)
                      .+..+..++...|+.+.|..
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~   99 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVV   99 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSS
T ss_pred             HHHHHHHHHHHHHhHhhhHh
Confidence            44455555555555544443

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.46  E-value=0.0022  Score=44.60  Aligned_cols=79  Identities=14%  Similarity=0.061  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY  250 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  250 (423)
                      ..+..+...+...|++++|...+++..+.... +...+..+...+.+.|++++|...|++..+.. +.+...+..+..++
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~   87 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            44555555666666666666666666554322 45555566666666666666666666665543 22344444444444


Q ss_pred             H
Q 014507          251 V  251 (423)
Q Consensus       251 ~  251 (423)
                      .
T Consensus        88 ~   88 (91)
T 1na3_A           88 Q   88 (91)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.42  E-value=0.0015  Score=48.10  Aligned_cols=78  Identities=17%  Similarity=-0.011  Sum_probs=37.4

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          259 GEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       259 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      +...|++..+.... +...+..+...|...|++++|...|++..... +.+...|..+..+|...|++++|...|++..+
T Consensus         4 a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444443222 34445555555555555555555555544432 12344455555555555555555555555443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.40  E-value=0.0013  Score=48.41  Aligned_cols=80  Identities=11%  Similarity=-0.021  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          293 GAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE  372 (423)
Q Consensus       293 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  372 (423)
                      .|.+.|++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus         3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4677788777653 3478889999999999999999999999998753 2357788899999999999999999999887


Q ss_pred             HC
Q 014507          373 RD  374 (423)
Q Consensus       373 ~~  374 (423)
                      +.
T Consensus        81 ~~   82 (115)
T 2kat_A           81 AA   82 (115)
T ss_dssp             HH
T ss_pred             Hh
Confidence            63

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.40  E-value=0.0022  Score=44.52  Aligned_cols=63  Identities=17%  Similarity=0.178  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 014507          206 VTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ  269 (423)
Q Consensus       206 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  269 (423)
                      ..+..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|...+++..+.
T Consensus        10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~   72 (91)
T 1na3_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL   72 (91)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence            344455555555566666666555555442 224445555555555555555555555555443

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.15  E-value=0.0027  Score=45.49  Aligned_cols=64  Identities=9%  Similarity=-0.100  Sum_probs=43.6

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKL  233 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  233 (423)
                      +...+..+...+.+.|++++|...|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4556666777777777777777777777666433 455666777777777777777777776654

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.10  E-value=0.003  Score=45.23  Aligned_cols=63  Identities=10%  Similarity=0.018  Sum_probs=31.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          309 DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE  372 (423)
Q Consensus       309 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  372 (423)
                      +...+..+..+|...|++++|.+.|++..+.. +-+...|..+..++...|++++|.+.+++..
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al   68 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI   68 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            34444555555555555555555555554422 1123345555555555555555555555443

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.10  E-value=0.0019  Score=50.38  Aligned_cols=85  Identities=14%  Similarity=0.128  Sum_probs=49.2

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507          182 KKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNL----------KMAEETFEEIKLLGEPLDKRSYGSMVMAYV  251 (423)
Q Consensus       182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~----------~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  251 (423)
                      +.+.+++|.+.++...+.... +...|..+..++...+++          ++|+..|++..+.. +-+..+|..+..+|.
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence            344566666666666665433 566666666666665543          36666666666653 224556666666666


Q ss_pred             HcC-----------ChhHHHHHHHHHHh
Q 014507          252 RAG-----------MLDRGEVLLREMDA  268 (423)
Q Consensus       252 ~~~-----------~~~~a~~~~~~m~~  268 (423)
                      ..|           ++++|.+.|++..+
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~  119 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVD  119 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHH
Confidence            543           55555555555555

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.02  E-value=0.016  Score=58.63  Aligned_cols=156  Identities=15%  Similarity=0.078  Sum_probs=98.1

Q ss_pred             HHHHccCCHHHHHH-HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 014507          178 HGYGKKMQIQNAEN-TLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGML  256 (423)
Q Consensus       178 ~~~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~  256 (423)
                      ......+++++|.+ ++..+.      +......++..+.+.|..+.|.++.++-.            .-.......|++
T Consensus       607 ~~~~~~~~~~~a~~~~l~~i~------~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~  668 (814)
T 3mkq_A          607 QTLTLRGEIEEAIENVLPNVE------GKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQL  668 (814)
T ss_dssp             HHHHHTTCHHHHHHHTGGGCC------CHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCH
T ss_pred             hHHHHhCCHHHHHHHHHhcCC------chHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCH
Confidence            33445677877766 442211      12233777777788888888876653211            112334567888


Q ss_pred             hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          257 DRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       257 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  336 (423)
                      +.|.++.+.+      .+...|..+...+.+.|+++.|++.|..+..         |..+...|...|+.+...++-+..
T Consensus       669 ~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a  733 (814)
T 3mkq_A          669 TLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDA  733 (814)
T ss_dssp             HHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHH
Confidence            8888775433      2567888888888888888888888887763         234555566677777766666555


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          337 RKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE  372 (423)
Q Consensus       337 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  372 (423)
                      ...|.      ++....++.+.|++++|++++.++.
T Consensus       734 ~~~~~------~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          734 ETTGK------FNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             HHTTC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHcCc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            55442      3344445666777777777776543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.99  E-value=0.0022  Score=50.06  Aligned_cols=71  Identities=10%  Similarity=0.005  Sum_probs=46.0

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChh----------HHHHHHHHHHhCCCCCCHHHHHHHHHHH
Q 014507          216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLD----------RGEVLLREMDAQEVYVGSEVYKALLRGY  285 (423)
Q Consensus       216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~----------~a~~~~~~m~~~~~~p~~~~~~~li~~~  285 (423)
                      .+.+.+++|.+.+++..+.. +.+...|+.+..++...++++          +|+..|++..+.+.. +..+|..+-.+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence            34566788888888888765 447788888888887776654          555555555554333 445555555555


Q ss_pred             HhC
Q 014507          286 SMN  288 (423)
Q Consensus       286 ~~~  288 (423)
                      ...
T Consensus        91 ~~l   93 (158)
T 1zu2_A           91 TSF   93 (158)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.86  E-value=0.04  Score=49.39  Aligned_cols=71  Identities=17%  Similarity=0.170  Sum_probs=43.7

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014507          274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCV  348 (423)
Q Consensus       274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  348 (423)
                      +..+|..+...+...|++++|...+++....+  |+...|..+-..+.-.|++++|.+.|++...  +.|...||
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~  346 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL  346 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence            55566665555555566666666666666653  5655665666666666777777666666655  34555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.74  E-value=0.042  Score=49.21  Aligned_cols=72  Identities=11%  Similarity=0.028  Sum_probs=40.3

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHH
Q 014507          308 PDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEAS  383 (423)
Q Consensus       308 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~  383 (423)
                      .+..+|..+...+...|++++|...+++....+  |+...|..+...+.-.|++++|.+.+++...  +.|...+|
T Consensus       275 ~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~  346 (372)
T 3ly7_A          275 NLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTL  346 (372)
T ss_dssp             TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHH
T ss_pred             cCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChH
Confidence            355555555555555566666666666665543  5555555555555566666666666665555  24544444

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.69  E-value=0.02  Score=53.22  Aligned_cols=92  Identities=11%  Similarity=-0.022  Sum_probs=66.1

Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHH
Q 014507          282 LRGYSMNGNSEGAQRVFEAIQFAG---ITP----DARMCALLINAYQMAGQSQKAYTAFQNMRK-----AG-LEPS-DKC  347 (423)
Q Consensus       282 i~~~~~~g~~~~a~~~~~~m~~~g---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~p~-~~~  347 (423)
                      +..+.+.|++++|+.++++..+..   +.|    ...+++.+..+|...|++++|+.++++..+     .| -.|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            445667788888888888776521   112    245788888888888888888888887754     22 2343 456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          348 VALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       348 ~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                      ++.|...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88888888888988888888887653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.64  E-value=0.0091  Score=55.47  Aligned_cols=87  Identities=8%  Similarity=-0.151  Sum_probs=64.2

Q ss_pred             hCCCHHHHHHHHHHHHH---CCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CC-CCCC-HHHHHHHH
Q 014507          287 MNGNSEGAQRVFEAIQF---AGITP----DARMCALLINAYQMAGQSQKAYTAFQNMRK-----AG-LEPS-DKCVALIL  352 (423)
Q Consensus       287 ~~g~~~~a~~~~~~m~~---~g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~-~~p~-~~~~~~li  352 (423)
                      ..|++++|+.++++..+   .-+-|    ...+++.+..+|...|++++|+.++++..+     .| -.|+ ..+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            45788888888887654   11122    246788888999999999999998888764     22 2344 45788888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH
Q 014507          353 SACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       353 ~~~~~~g~~~~a~~~~~~m~~  373 (423)
                      ..|...|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            889999999999988887654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.63  E-value=0.14  Score=51.75  Aligned_cols=153  Identities=17%  Similarity=0.077  Sum_probs=96.3

Q ss_pred             HHHhcCCchHHHH-HHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 014507          144 QLKLMEHPLYLQV-AELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLK  222 (423)
Q Consensus       144 ~~~~~~~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  222 (423)
                      .....++++.|.. +..     .+ ++......++..+.+.|..+.|.++.+.-.            .-.......|+++
T Consensus       608 ~~~~~~~~~~a~~~~l~-----~i-~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~  669 (814)
T 3mkq_A          608 TLTLRGEIEEAIENVLP-----NV-EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLT  669 (814)
T ss_dssp             HHHHTTCHHHHHHHTGG-----GC-CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHH
T ss_pred             HHHHhCCHHHHHHHHHh-----cC-CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHH
Confidence            3345677777654 321     11 213334788888889999999987763211            1133456789999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Q 014507          223 MAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQ  302 (423)
Q Consensus       223 ~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  302 (423)
                      +|.++.+.+      .+...|..+...+.+.++++.|.+.|.++.+         |..+...+...|+.+...++-+...
T Consensus       670 ~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~  734 (814)
T 3mkq_A          670 LARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAE  734 (814)
T ss_dssp             HHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHH
Confidence            999886543      4778999999999999999999999987754         3445555666777766655555444


Q ss_pred             HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          303 FAGITPDARMCALLINAYQMAGQSQKAYTAFQN  335 (423)
Q Consensus       303 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  335 (423)
                      ..|-      ++....+|.+.|++++|.+++.+
T Consensus       735 ~~~~------~~~A~~~~~~~g~~~~a~~~~~~  761 (814)
T 3mkq_A          735 TTGK------FNLAFNAYWIAGDIQGAKDLLIK  761 (814)
T ss_dssp             HTTC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HcCc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence            4321      12233334445555555555443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.56  E-value=0.013  Score=54.44  Aligned_cols=86  Identities=9%  Similarity=0.030  Sum_probs=68.0

Q ss_pred             HcCCHHHHHHHHHHHHH---CCCC---CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCc-CHHHHHHHH
Q 014507          322 MAGQSQKAYTAFQNMRK---AGLE---PS-DKCVALILSACEKENQLNRALEFLIDLERD-----G-FMV-GKEASCTLA  387 (423)
Q Consensus       322 ~~g~~~~a~~~~~~m~~---~~~~---p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~~-~~~~~~~l~  387 (423)
                      ..|++++|+.++++..+   .-+.   |+ ..+++.|..+|...|++++|..++++..+-     | -.| ...+++.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            45789999999988765   2222   33 468999999999999999999999987642     2 123 356689999


Q ss_pred             HHHHHcCCHHHHHHHHHHhc
Q 014507          388 AWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       388 ~~~~~~g~~~~A~~~~~~m~  407 (423)
                      ..|...|++++|..++++-.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al  409 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAI  409 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHH
Confidence            99999999999999998653

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.45  E-value=0.021  Score=53.01  Aligned_cols=92  Identities=13%  Similarity=0.014  Sum_probs=72.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCc-CHH
Q 014507          316 LINAYQMAGQSQKAYTAFQNMRKA---GLEPS----DKCVALILSACEKENQLNRALEFLIDLERD-----G-FMV-GKE  381 (423)
Q Consensus       316 li~~~~~~g~~~~a~~~~~~m~~~---~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~~-~~~  381 (423)
                      .+..+.+.|++++|.+++++..+.   -+.|+    ..+++.+..+|...|++++|+.++++..+-     | -.| ...
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            355567889999999999998752   12232    468899999999999999999999987642     2 122 356


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          382 ASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       382 ~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      +++.|...|...|++++|..++++..
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            68899999999999999999998654

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.34  E-value=0.19  Score=39.77  Aligned_cols=130  Identities=15%  Similarity=0.065  Sum_probs=95.8

Q ss_pred             HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 014507          248 MAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQ  327 (423)
Q Consensus       248 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  327 (423)
                      ......|+++.|.++.+++      -+...|..|.....+.|+++-|++.|.....         +..+.-.|.-.|+.+
T Consensus        13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e   77 (177)
T 3mkq_B           13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN   77 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred             HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence            4456789999999998776      3788999999999999999999999998873         245555667788888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          328 KAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       328 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      +..++-+.....|-      ++.....+.-.|+++++.+++.+.   |--|..      .......|-.+.|.++.+++.
T Consensus        78 ~L~kla~iA~~~g~------~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA------~~~A~t~g~~~~a~~~~~~~~  142 (177)
T 3mkq_B           78 KLSKMQNIAQTRED------FGSMLLNTFYNNSTKERSSIFAEG---GSLPLA------YAVAKANGDEAAASAFLEQAE  142 (177)
T ss_dssp             HHHHHHHHHHHTTC------HHHHHHHHHHHTCHHHHHHHHHHT---TCHHHH------HHHHHHTTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCcc------HHHHHHHHHHcCCHHHHHHHHHHC---CChHHH------HHHHHHcCcHHHHHHHHHHhC
Confidence            87776666655541      455666677889999999998553   332311      112234788999999998863

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.12  E-value=0.04  Score=38.73  Aligned_cols=53  Identities=17%  Similarity=0.150  Sum_probs=21.2

Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          180 YGKKMQIQNAENTLLAMKRRGFICDQV-TLTVMVVMYSKAGNLKMAEETFEEIKL  233 (423)
Q Consensus       180 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~  233 (423)
                      +.+.|++++|...+++..+.... +.. .|..+...|...|++++|...|++..+
T Consensus        10 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A           10 LINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            33444444444444444333211 233 334444444444444444444444433

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.89  E-value=0.1  Score=36.59  Aligned_cols=58  Identities=19%  Similarity=0.199  Sum_probs=34.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 014507          212 VVMYSKAGNLKMAEETFEEIKLLGEPLDKR-SYGSMVMAYVRAGMLDRGEVLLREMDAQE  270 (423)
Q Consensus       212 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~  270 (423)
                      ...+.+.|++++|...|++..+.. +.+.. .+..+..+|...|++++|...|++..+..
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~   65 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN   65 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence            344556666666666666666543 22445 56666666666666666666666666543

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.63  E-value=0.47  Score=35.45  Aligned_cols=138  Identities=13%  Similarity=0.045  Sum_probs=75.4

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHH
Q 014507          218 AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRV  297 (423)
Q Consensus       218 ~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  297 (423)
                      .|..++..++..+....   .+..-||-+|.-....-+-+...++++..-+.   .|.          ..+|++......
T Consensus        20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C   83 (172)
T 1wy6_A           20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVEC   83 (172)
T ss_dssp             TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHH
T ss_pred             hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHH
Confidence            45556666666555543   23444555554444444444444444444331   111          223344433333


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507          298 FEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFM  377 (423)
Q Consensus       298 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  377 (423)
                      +-.+-     .+...++..+..+...|.-+.-.+++.++.. +.+|++.....+..+|.+.|+..++.+++.+.-+.|++
T Consensus        84 ~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           84 GVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            33222     2445556666677777777777777776543 23566666777777777777777777777777776653

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.55  E-value=0.11  Score=36.32  Aligned_cols=19  Identities=5%  Similarity=-0.076  Sum_probs=7.1

Q ss_pred             HHHHhCCCHHHHHHHHHHH
Q 014507          283 RGYSMNGNSEGAQRVFEAI  301 (423)
Q Consensus       283 ~~~~~~g~~~~a~~~~~~m  301 (423)
                      ..+.+.|++++|...|+.+
T Consensus        51 ~~~~~~g~y~~Ai~~w~~~   69 (93)
T 3bee_A           51 NDHFISFRFQEAIDTWVLL   69 (93)
T ss_dssp             HHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHH
Confidence            3333333333333333333

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.40  E-value=0.17  Score=35.40  Aligned_cols=48  Identities=8%  Similarity=-0.083  Sum_probs=23.7

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      .++|..++++..+.... +......+...+.+.|++++|...|+++.+.
T Consensus        25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            35555555555544322 4444444455555555555555555555543

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.26  E-value=0.26  Score=35.20  Aligned_cols=22  Identities=9%  Similarity=-0.046  Sum_probs=9.2

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHH
Q 014507          210 VMVVMYSKAGNLKMAEETFEEI  231 (423)
Q Consensus       210 ~li~~~~~~g~~~~A~~~~~~m  231 (423)
                      .+...+.+.|+++.|..+|+..
T Consensus        10 ~lG~~~~~~~~y~~A~~W~~~A   31 (104)
T 2v5f_A           10 ELGKVAYTEADYYHTELWMEQA   31 (104)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHccchHHHHHHHHHH
Confidence            3344444444444444444433

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.12  E-value=0.13  Score=39.68  Aligned_cols=21  Identities=10%  Similarity=0.007  Sum_probs=8.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHH
Q 014507          318 NAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       318 ~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      -+|.+.|++++|.+.++.+.+
T Consensus        79 v~~~kl~~Y~~A~~y~~~lL~   99 (152)
T 1pc2_A           79 VGNYRLKEYEKALKYVRGLLQ   99 (152)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHh
Confidence            333444444444444444443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.11  E-value=0.36  Score=37.12  Aligned_cols=81  Identities=21%  Similarity=0.158  Sum_probs=41.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---ChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhCCCHHHHH
Q 014507          221 LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG---MLDRGEVLLREMDAQEVYV--GSEVYKALLRGYSMNGNSEGAQ  295 (423)
Q Consensus       221 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~  295 (423)
                      ...+.+-|.+..+.| .++..+.-.+..++++.+   +.+++..++++..+.+ .|  +...+-.|.-+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            334445555444444 245555555555555555   4445555665555543 12  2333444444556666666666


Q ss_pred             HHHHHHHH
Q 014507          296 RVFEAIQF  303 (423)
Q Consensus       296 ~~~~~m~~  303 (423)
                      +.++.+.+
T Consensus        92 ~y~~~lL~   99 (152)
T 1pc2_A           92 KYVRGLLQ   99 (152)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            66665554

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=95.04  E-value=0.35  Score=34.45  Aligned_cols=67  Identities=13%  Similarity=-0.019  Sum_probs=51.9

Q ss_pred             CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          168 ANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRG------FICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       168 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      .+...+-.+...+.+.++++.|...|+...+.-      -.+....+..+..++.+.|+++.|..++++..+.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            455667778888889999999998888876541      1235667888888888899999999888888775

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=94.87  E-value=0.86  Score=34.07  Aligned_cols=139  Identities=12%  Similarity=0.076  Sum_probs=90.5

Q ss_pred             HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 014507          252 RAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYT  331 (423)
Q Consensus       252 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~  331 (423)
                      -.|..++..++..+..+..   +..-||-+|--....-+-+-..++++.+-+.   .|.          ...|+......
T Consensus        19 ldG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~   82 (172)
T 1wy6_A           19 LDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE   82 (172)
T ss_dssp             HTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred             HhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHH
Confidence            3466666666666655531   3444555554444444555555555444431   111          12344444444


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507          332 AFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRET  411 (423)
Q Consensus       332 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  411 (423)
                      .+-.+     ..+...+...+......|+-++..+++..+... -+|+++..-.+..+|.+.|+..+|.+++++--++|+
T Consensus        83 C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           83 CGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            43332     234456778888999999999999999996553 578999999999999999999999999999888776


Q ss_pred             c
Q 014507          412 Y  412 (423)
Q Consensus       412 ~  412 (423)
                      .
T Consensus       157 k  157 (172)
T 1wy6_A          157 K  157 (172)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=93.64  E-value=2.1  Score=33.77  Aligned_cols=131  Identities=14%  Similarity=0.166  Sum_probs=96.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 014507          212 VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS  291 (423)
Q Consensus       212 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  291 (423)
                      .....+.|+++.|.++.+++      -+...|..|.......|+++-|.+.|.+..+         +..+.-.|.-.|+.
T Consensus        12 F~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~   76 (177)
T 3mkq_B           12 FDLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDV   76 (177)
T ss_dssp             HHHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCH
T ss_pred             HHHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCH
Confidence            44556889999999998765      4788999999999999999999999987765         44566667778998


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          292 EGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDL  371 (423)
Q Consensus       292 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  371 (423)
                      ++..++-+.....|      -++.....+.-.|+++++.++|.+.   |-.|-..      -.....|..+.|.++.+++
T Consensus        77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~------~~A~t~g~~~~a~~~~~~~  141 (177)
T 3mkq_B           77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAY------AVAKANGDEAAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence            88887777666554      1355566677889999999998654   3223221      1122356677888887765


Q ss_pred             H
Q 014507          372 E  372 (423)
Q Consensus       372 ~  372 (423)
                      .
T Consensus       142 ~  142 (177)
T 3mkq_B          142 E  142 (177)
T ss_dssp             T
T ss_pred             C
Confidence            3

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=93.24  E-value=0.94  Score=39.00  Aligned_cols=93  Identities=10%  Similarity=0.108  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC-CCH
Q 014507          221 LKMAEETFEEIKLLGEPLD---KRSYGSMVMAYVRA-----GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMN-GNS  291 (423)
Q Consensus       221 ~~~A~~~~~~m~~~g~~~~---~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~  291 (423)
                      ...|...+++..+.  .|+   -..|+.|...|.+.     |+.++|.+.|++..+.+..-+..++......+++. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            34566666666664  455   45677777777774     78888888888877754322356666777777774 778


Q ss_pred             HHHHHHHHHHHHCCCC--CCHHHHHH
Q 014507          292 EGAQRVFEAIQFAGIT--PDARMCAL  315 (423)
Q Consensus       292 ~~a~~~~~~m~~~g~~--p~~~~~~~  315 (423)
                      +++.+.+++.......  |+....|.
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan~  282 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLVI  282 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHHH
Confidence            8888888777765444  55443333

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.23  E-value=0.55  Score=34.74  Aligned_cols=81  Identities=10%  Similarity=0.092  Sum_probs=36.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHH
Q 014507          291 SEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQK---AYTAFQNMRKAGLEP--SDKCVALILSACEKENQLNRAL  365 (423)
Q Consensus       291 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~  365 (423)
                      ...+.+-|......| .++..+--.+.-++.+..+...   +..++++..+.+ .|  .....-.|.-++.+.|+++.|.
T Consensus        17 l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A~   94 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   94 (126)
T ss_dssp             HHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHHH
Confidence            334444444333333 2444444444444444444433   555555554432 12  2233334444555555555555


Q ss_pred             HHHHHHHH
Q 014507          366 EFLIDLER  373 (423)
Q Consensus       366 ~~~~~m~~  373 (423)
                      +.++.+.+
T Consensus        95 ~~~~~lL~  102 (126)
T 1nzn_A           95 KYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=93.15  E-value=1.3  Score=38.12  Aligned_cols=94  Identities=15%  Similarity=0.052  Sum_probs=73.8

Q ss_pred             HHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCh
Q 014507          186 IQNAENTLLAMKRRGFICD---QVTLTVMVVMYSKA-----GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA-GML  256 (423)
Q Consensus       186 ~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~-~~~  256 (423)
                      ...|...+++..+.  .|+   ...|..+...|.+.     |+.++|.+.|++..+.+-.-+..++......++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            45777777777776  344   56888999999994     99999999999999875322477888888888884 999


Q ss_pred             hHHHHHHHHHHhCCCC--CCHHHHHHH
Q 014507          257 DRGEVLLREMDAQEVY--VGSEVYKAL  281 (423)
Q Consensus       257 ~~a~~~~~~m~~~~~~--p~~~~~~~l  281 (423)
                      +.+.+.+++.......  |+....+..
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence            9999999999998776  775554443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.05  E-value=0.63  Score=46.10  Aligned_cols=55  Identities=11%  Similarity=-0.068  Sum_probs=40.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          352 LSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       352 i~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      ..-|...|+++.|.++-++.... .+.+-.+|..|..+|.+.|+++.|+-.++.++
T Consensus       344 a~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          344 TNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            33455677888888888877764 23356778888888888888888888888775

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.05  E-value=1.8  Score=39.43  Aligned_cols=70  Identities=19%  Similarity=0.304  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK-----AGLEPSDKC  347 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~  347 (423)
                      +...++..+...|++++|...+..+.... +-+...|..+|.++.+.|+..+|++.|+...+     .|+.|...+
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            34456667777788888887777776542 33667788888888888888888888777643     477777655

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=92.69  E-value=0.82  Score=33.81  Aligned_cols=22  Identities=9%  Similarity=-0.005  Sum_probs=10.5

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Q 014507          317 INAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       317 i~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      .-++.+.|++++|.+.++.+.+
T Consensus        81 Avg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           81 AVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHH
Confidence            3344444555555555444444

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.57  E-value=2  Score=32.83  Aligned_cols=51  Identities=12%  Similarity=0.012  Sum_probs=24.6

Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 014507          254 GMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG  305 (423)
Q Consensus       254 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  305 (423)
                      +|+++|.++|+.+.+.+-.. ...|-...+.-.+.|++.+|.+++......+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~  124 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG  124 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence            44555555555554332222 4444444444555555555555555555443

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=92.38  E-value=8.4  Score=37.30  Aligned_cols=342  Identities=7%  Similarity=-0.018  Sum_probs=155.4

Q ss_pred             hhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccchHHHHHHhcCChhhhhh-hH-HHHHHHHhccCCCCCHHHH
Q 014507           46 SRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITEEQKQAISQFPRKMTKR-CK-AFVKQIICVSPETGNLSDL  123 (423)
Q Consensus        46 ~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~~~~~~a~~~~~~m~~~-~~-~~~~~ll~~~~~~g~~~~a  123 (423)
                      .++|+++.+..+  ...+...-+.   +...|-.+...+.......+..++.+-+.. -. ..-+..+..+.+.+++...
T Consensus        17 ~~~~~~~~~~~l--~~~l~~~pL~---~yl~y~~l~~~l~~~~~~ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~   91 (618)
T 1qsa_A           17 WDNRQMDVVEQM--MPGLKDYPLY---PYLEYRQITDDLMNQPAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGL   91 (618)
T ss_dssp             HHTTCHHHHHHH--SGGGTTSTTH---HHHHHHHHHHTGGGCCHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHCCCHHHHHHH--HHhhcCCCcH---HHHHHHHHHhCcccCCHHHHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHH
Confidence            667777777665  3333222222   223444444433322234444444443331 11 1223344555567788888


Q ss_pred             HHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHH--HHHHHHHHHHcC-
Q 014507          124 LAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQN--AENTLLAMKRRG-  200 (423)
Q Consensus       124 ~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~--a~~~~~~m~~~g-  200 (423)
                      +.++.. ...+...-.....+....|+...+......+-..| ......++.++..+.+.|.+..  ...=++.+...| 
T Consensus        92 l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~~  169 (618)
T 1qsa_A           92 LAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGN  169 (618)
T ss_dssp             HHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred             HHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
Confidence            876655 33344444556667777787666655444444444 2344566677777776654432  222223333322 


Q ss_pred             ----------CCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHHcCChhHHHHHHHHH
Q 014507          201 ----------FICDQVT-LTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRS---YGSMVMAYVRAGMLDRGEVLLREM  266 (423)
Q Consensus       201 ----------~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m  266 (423)
                                +.++... ...++..+.+   ...+.....   .  +.++...   +...+.-+.+ .+.+.|...+...
T Consensus       170 ~~~a~~l~~~l~~~~~~~a~~~~al~~~---p~~~~~~~~---~--~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~  240 (618)
T 1qsa_A          170 TGLVTVLAGQMPADYQTIASAIISLANN---PNTVLTFAR---T--TGATDFTRQMAAVAFASVAR-QDAENARLMIPSL  240 (618)
T ss_dssp             HHHHHHHHHTCCGGGHHHHHHHHHHHHC---GGGHHHHHH---H--SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhC---hHhHHHHHh---c--cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhh
Confidence                      1111111 1111111111   111111110   0  1222221   1112222222 3667777777766


Q ss_pred             HhCCCCCCHHHH----HHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507          267 DAQEVYVGSEVY----KALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE  342 (423)
Q Consensus       267 ~~~~~~p~~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  342 (423)
                      .+.... +....    ..+.......+...++...+......  .++.....-.+....+.|+++.|...|+.|......
T Consensus       241 ~~~~~~-~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~~~  317 (618)
T 1qsa_A          241 AQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDRRGLNTWLARLPMEAKE  317 (618)
T ss_dssp             HHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTGGG
T ss_pred             hhccCC-CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCHHHHHHHHHHccccccc
Confidence            543321 22222    22222233334233444455444332  233333333334445567777777777776542211


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC------------CCCc-------C-----H----HHHHHHHHHHHHcC
Q 014507          343 PSDKCVALILSACEKENQLNRALEFLIDLERD------------GFMV-------G-----K----EASCTLAAWFKRLG  394 (423)
Q Consensus       343 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------------g~~~-------~-----~----~~~~~l~~~~~~~g  394 (423)
                       ...-.-=+.+++...|+.++|..+|+.+.+.            |.++       +     .    ..+ .-+..+...|
T Consensus       318 -~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~-~r~~~L~~~g  395 (618)
T 1qsa_A          318 -KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEM-ARVRELMYWN  395 (618)
T ss_dssp             -SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHH-HHHHHHHHTT
T ss_pred             -cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHH-HHHHHHHHCC
Confidence             2222233445566677777777777665421            2111       0     0    111 2344567788


Q ss_pred             CHHHHHHHHHHhcc
Q 014507          395 VVEEVEHVLREYGL  408 (423)
Q Consensus       395 ~~~~A~~~~~~m~~  408 (423)
                      ....|...+..+.+
T Consensus       396 ~~~~a~~ew~~~~~  409 (618)
T 1qsa_A          396 LDNTARSEWANLVK  409 (618)
T ss_dssp             CHHHHHHHHHHHHT
T ss_pred             ChhhHHHHHHHHHh
Confidence            88888877776654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.87  E-value=1.3  Score=33.75  Aligned_cols=63  Identities=14%  Similarity=0.130  Sum_probs=37.5

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014507          289 GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILS  353 (423)
Q Consensus       289 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  353 (423)
                      +++++|.++|+.+.+.+ +--...|-...+--.++|+..+|.+++......+-+|. ..+...+.
T Consensus        74 ~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~-~~le~a~~  136 (161)
T 4h7y_A           74 QEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL-EMLEIALR  136 (161)
T ss_dssp             HCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH-HHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH-HHHHHHHH
Confidence            56667777777665432 22256666666666677777777777777776554433 33344333

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=91.80  E-value=1.9  Score=30.22  Aligned_cols=63  Identities=17%  Similarity=0.176  Sum_probs=45.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507          325 QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAA  388 (423)
Q Consensus       325 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~  388 (423)
                      +.-++.+-++.+....+.|++......+++|.+.+++..|.++++-.+.+ ......+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence            34456666677777778888888888888888888888888888877665 2233455666654

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=91.30  E-value=1.9  Score=33.49  Aligned_cols=128  Identities=8%  Similarity=0.027  Sum_probs=62.7

Q ss_pred             CCCCCCHHHH--HHHHHHHHhCCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          269 QEVYVGSEVY--KALLRGYSMNGNSEGAQRVFEAIQFA-GITPD-------ARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       269 ~~~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~-------~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      .|..|....+  -.-+..+...|.++.|+-+.+.+... +..|+       ..++..+.+++...|++..|...|++..+
T Consensus        12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq   91 (167)
T 3ffl_A           12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ   91 (167)
T ss_dssp             ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence            3444444333  33356666777777777766664431 11233       12445556677777777777777777543


Q ss_pred             C-CCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          339 A-GLEPSDK-CVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       339 ~-~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      . ..-+... +...+    ........         ......+.+.--.+..+|.+.|++++|+.+++.++.+
T Consensus        92 ~~k~l~k~~s~~~~~----~~~ss~p~---------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k  151 (167)
T 3ffl_A           92 QKKALSKTSKVRPST----GNSASTPQ---------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIPSR  151 (167)
T ss_dssp             HHHCC---------------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred             HHHHHhcCCCccccc----cccCCCcc---------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence            1 1112111 11111    00000000         0112234455556899999999999999999987654

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.15  E-value=7.3  Score=41.01  Aligned_cols=186  Identities=10%  Similarity=0.010  Sum_probs=118.9

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCC--------------
Q 014507          211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ----EVY--------------  272 (423)
Q Consensus       211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~--------------  272 (423)
                      ++..+...+..+.|.++..-     .+.+...--.+..+|...|++++|...|++....    +..              
T Consensus       818 l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~  892 (1139)
T 4fhn_B          818 LVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKY  892 (1139)
T ss_dssp             HHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTT
T ss_pred             HHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccc
Confidence            44445555666555543322     2335555556777888999999999999875321    000              


Q ss_pred             ----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 014507          273 ----VGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPD----ARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS  344 (423)
Q Consensus       273 ----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  344 (423)
                          .-..-|..++..+-+.+.++.+.++-....+..-.-+    ...|..+.+++...|++++|...+-.+.....+  
T Consensus       893 ~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--  970 (1139)
T 4fhn_B          893 HHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--  970 (1139)
T ss_dssp             TSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--
T ss_pred             cccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--
Confidence                0123477888899999999999888776655321112    125888999999999999999999888765443  


Q ss_pred             HHHHHHHHHHHHHcCCH------------HHHHHHHHHHHHC--CCCcCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          345 DKCVALILSACEKENQL------------NRALEFLIDLERD--GFMVGKEASCTLAAWFKRLGVVEEVEHVL  403 (423)
Q Consensus       345 ~~~~~~li~~~~~~g~~------------~~a~~~~~~m~~~--g~~~~~~~~~~l~~~~~~~g~~~~A~~~~  403 (423)
                      ...+..|+..++..|..            +++.+++....+.  .....+.-|..|-..+...|++..|-.++
T Consensus       971 ~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vm 1043 (1139)
T 4fhn_B          971 KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAII 1043 (1139)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHH
Confidence            46677788877766554            3444444432221  11222345676777777788887766654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.03  E-value=1.2  Score=40.61  Aligned_cols=77  Identities=9%  Similarity=0.032  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCcCHHHHHHHH
Q 014507          313 CALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER-----DGFMVGKEASCTLA  387 (423)
Q Consensus       313 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~~~~~~~~~l~  387 (423)
                      ...++..+...|++++|...+..+.... +.+...+..++.++.+.|+..+|.+.|+.+.+     .|+.|+..+-...-
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~  252 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNE  252 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence            4567788889999999999999887643 45788999999999999999999999998754     39999988755443


Q ss_pred             HHH
Q 014507          388 AWF  390 (423)
Q Consensus       388 ~~~  390 (423)
                      ..+
T Consensus       253 ~il  255 (388)
T 2ff4_A          253 RIL  255 (388)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=90.53  E-value=9.8  Score=38.65  Aligned_cols=150  Identities=10%  Similarity=0.037  Sum_probs=80.1

Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHHHHH--HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCH-HHHH---HHHHHHHHc
Q 014507          250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYK--ALLRGYSMNGNSEGAQRVFEAIQFAGITPDA-RMCA---LLINAYQMA  323 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~---~li~~~~~~  323 (423)
                      +...|+.+....++..+.+..   +..+..  .+.-++...|+.+.+..+.+.+...   .+. .-|.   ++..+|+..
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGT  573 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS---DESLLRYGGAFTIALAYAGT  573 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTS
T ss_pred             hcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCC
Confidence            345566666666666665532   222333  3333444677778888887777753   222 2232   234456677


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCH-HHHHHH
Q 014507          324 GQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVV-EEVEHV  402 (423)
Q Consensus       324 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~-~~A~~~  402 (423)
                      |+.....++++.+.+.. ..+......+.-++...|+.+.+.++++.+.+.+ .|.+..-..+.-+....|.. .+|.++
T Consensus       574 Gn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~  651 (963)
T 4ady_A          574 GNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDV  651 (963)
T ss_dssp             CCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHH
T ss_pred             CCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHH
Confidence            77777767777776532 2223333333334444566666666666555543 34444444444444444443 456666


Q ss_pred             HHHhc
Q 014507          403 LREYG  407 (423)
Q Consensus       403 ~~~m~  407 (423)
                      +..+.
T Consensus       652 L~~L~  656 (963)
T 4ady_A          652 LDPLT  656 (963)
T ss_dssp             HHHHH
T ss_pred             HHHHc
Confidence            66664

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=90.41  E-value=1.6  Score=43.21  Aligned_cols=124  Identities=10%  Similarity=-0.050  Sum_probs=75.5

Q ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHH--HHHHHHHHHHcCC-hhHHHHHHHHHHhC------CCCC-CH--
Q 014507          209 TVMVVMYSKAGN-LKMAEETFEEIKLLGEPLDKRS--YGSMVMAYVRAGM-LDRGEVLLREMDAQ------EVYV-GS--  275 (423)
Q Consensus       209 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~~~~~~--~~~li~~~~~~~~-~~~a~~~~~~m~~~------~~~p-~~--  275 (423)
                      ..++..+...++ .+.|..+|+++.+..  |...+  ...++..+...++ --+|.+++.+..+.      ...+ +.  
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~  329 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADS  329 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence            344555555555 577888888888763  33322  2233333323222 12344444443321      1111 11  


Q ss_pred             --------HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          276 --------EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNM  336 (423)
Q Consensus       276 --------~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m  336 (423)
                              ...+.=...+...|+++-|+++-++.+..  .| +-.+|..|..+|...|+++.|+-.++.+
T Consensus       330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence                    11122244566789999999999998875  45 6789999999999999999999988877

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.08  E-value=12  Score=34.67  Aligned_cols=154  Identities=14%  Similarity=0.174  Sum_probs=78.2

Q ss_pred             cCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----Hc
Q 014507          183 KMQIQNAENTLLAMKRR-----GFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV----RA  253 (423)
Q Consensus       183 ~~~~~~a~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~----~~  253 (423)
                      .|+++.|.+.+-.+.+.     +..-+......++..|...|+++...+.+..+....-. .......++..+.    ..
T Consensus        29 ~~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q-lk~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           29 QNDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ-LKLSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT-SHHHHHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcC
Confidence            36777787777666542     23335666777888888888888887777666543212 1222333443332    22


Q ss_pred             CChhHHH--HHHHHHHh--CC-CCC---CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHC--CCCCC---HHHHHHHHHHH
Q 014507          254 GMLDRGE--VLLREMDA--QE-VYV---GSEVYKALLRGYSMNGNSEGAQRVFEAIQFA--GITPD---ARMCALLINAY  320 (423)
Q Consensus       254 ~~~~~a~--~~~~~m~~--~~-~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~---~~~~~~li~~~  320 (423)
                      ...+...  .+.+....  .| +..   .......|...+...|++.+|..++..+...  |....   ...+...++.|
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~  187 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS  187 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            2222111  11111110  01 101   1123345566666666777766666665532  21111   23455556666


Q ss_pred             HHcCCHHHHHHHHHHHH
Q 014507          321 QMAGQSQKAYTAFQNMR  337 (423)
Q Consensus       321 ~~~g~~~~a~~~~~~m~  337 (423)
                      ...+++.+|..++....
T Consensus       188 l~~~d~~~a~~~~~ki~  204 (445)
T 4b4t_P          188 ILKGDYSQATVLSRKIL  204 (445)
T ss_dssp             HHHTCHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            66666666666666553

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=88.85  E-value=4  Score=30.37  Aligned_cols=62  Identities=18%  Similarity=0.174  Sum_probs=46.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507          326 SQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAA  388 (423)
Q Consensus       326 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~  388 (423)
                      .-+..+-++.+....+.|++......+++|.+.+++..|.++|+-.+.+ ..+...+|..+++
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq  130 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence            3455666666667778899999999999999999999999999887765 3344556776654

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.73  E-value=3.5  Score=28.90  Aligned_cols=34  Identities=18%  Similarity=0.264  Sum_probs=13.5

Q ss_pred             hCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Q 014507          268 AQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAI  301 (423)
Q Consensus       268 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  301 (423)
                      ..++.|++.+..+.+.+|.+.+++..|.++++.+
T Consensus        38 ~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~i   71 (109)
T 1v54_E           38 GYDLVPEPKIIDAALRACRRLNDFASAVRILEVV   71 (109)
T ss_dssp             TSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            3333334444444444444444444444444333

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=87.89  E-value=17  Score=33.62  Aligned_cols=259  Identities=11%  Similarity=0.064  Sum_probs=160.5

Q ss_pred             CCchHHHHHHHHHhh-----cccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHHH--HHHHHHHHHcCC
Q 014507          149 EHPLYLQVAELALLE-----ESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRR-GFICDQVTL--TVMVVMYSKAGN  220 (423)
Q Consensus       149 ~~~~~a~~~~~~~~~-----~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~--~~li~~~~~~g~  220 (423)
                      ++++.|...+..+.+     .....+......++..|...++++...+.+..+.+. |..+...+.  +.++........
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~ai~~~V~~~~~~l~~~~~  109 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLSIQYMIQKVMEYLKSSKS  109 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHHHHHHHHHHHHHHHHHCT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Confidence            566667555444432     234556778889999999999999998888776544 443333221  222333333343


Q ss_pred             HHHHH--HHHHHHHH--cC-CCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhC--CCCCC---HHHHHHHHHHHHh
Q 014507          221 LKMAE--ETFEEIKL--LG-EPLD---KRSYGSMVMAYVRAGMLDRGEVLLREMDAQ--EVYVG---SEVYKALLRGYSM  287 (423)
Q Consensus       221 ~~~A~--~~~~~m~~--~g-~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~  287 (423)
                      .+...  .+.+....  .| +-..   ......|...+...|++.+|..++.++...  |....   ...+..-+..|..
T Consensus       110 ~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~  189 (445)
T 4b4t_P          110 LDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSIL  189 (445)
T ss_dssp             THHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            33221  11111111  12 2222   223466888899999999999999998742  33222   3467778899999


Q ss_pred             CCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHH----HHHHHHHH
Q 014507          288 NGNSEGAQRVFEAIQF----AGITPD--ARMCALLINAYQMAGQSQKAYTAFQNMRKA-GLEPSDKCV----ALILSACE  356 (423)
Q Consensus       288 ~g~~~~a~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~----~~li~~~~  356 (423)
                      .+++.+|..+++++..    ....|+  ...+...+..+...+++.+|.+.|.+..+. ...-|...+    ..++....
T Consensus       190 ~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~i  269 (445)
T 4b4t_P          190 KGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLV  269 (445)
T ss_dssp             HTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHH
Confidence            9999999999998753    222222  245677888888999999999888877542 122233322    23333333


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHc--CCHHHHHHHHHHhc
Q 014507          357 KENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRL--GVVEEVEHVLREYG  407 (423)
Q Consensus       357 ~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~m~  407 (423)
                      -.+..+.-..++........-++...|..++.+|...  .+|+.+.+.|+...
T Consensus       270 La~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L  322 (445)
T 4b4t_P          270 LSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL  322 (445)
T ss_dssp             HSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred             hCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence            4444455555555555554456778899999999874  45777777766543

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=86.80  E-value=16  Score=38.37  Aligned_cols=147  Identities=10%  Similarity=-0.020  Sum_probs=94.6

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC----------------
Q 014507          245 SMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP----------------  308 (423)
Q Consensus       245 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p----------------  308 (423)
                      .++..+.+.+..+.+.++.....     -+....-.+..+|...|++++|.+.|++... |+..                
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence            34455556666666555443322     2444445566778889999999999976431 1110                


Q ss_pred             -------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 014507          309 -------DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPS----DKCVALILSACEKENQLNRALEFLIDLERDGFM  377 (423)
Q Consensus       309 -------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~  377 (423)
                             -..-|..++..+-+.|.++.+.++-+...+..-.-+    ...|..+.+++...|++++|...+-.+..... 
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-  969 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-  969 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence                   123367788888888888888888776665321111    12578888888999999999888877765433 


Q ss_pred             cCHHHHHHHHHHHHHcCCHHHH
Q 014507          378 VGKEASCTLAAWFKRLGVVEEV  399 (423)
Q Consensus       378 ~~~~~~~~l~~~~~~~g~~~~A  399 (423)
                       -......|+..++..|..+.-
T Consensus       970 -r~~cLr~LV~~lce~~~~~~L  990 (1139)
T 4fhn_B          970 -KKSCLLDFVNQLTKQGKINQL  990 (1139)
T ss_dssp             -CHHHHHHHHHHHHHHCCHHHH
T ss_pred             -HHHHHHHHHHHHHhCCChhhh
Confidence             345667777777766665543

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=86.23  E-value=6.7  Score=27.41  Aligned_cols=51  Identities=12%  Similarity=0.109  Sum_probs=23.2

Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507          284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG  340 (423)
Q Consensus       284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  340 (423)
                      .+...|++++|..+.+.+.    .||...|-++..  .+.|..+++...+.++..+|
T Consensus        49 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg   99 (116)
T 2p58_C           49 SLMNRGDYASALQQGNKLA----YPDLEPWLALCE--YRLGLGSALESRLNRLARSQ   99 (116)
T ss_dssp             HHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC
T ss_pred             HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence            3444555555555444333    455555544433  23444444444444444433

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=84.78  E-value=6.5  Score=29.26  Aligned_cols=41  Identities=7%  Similarity=0.006  Sum_probs=17.6

Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 014507          227 TFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMD  267 (423)
Q Consensus       227 ~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  267 (423)
                      -++.+....+.|++......+.+|-+.+|+..|.++|+-.+
T Consensus        75 glN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK  115 (152)
T 2y69_E           75 GMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK  115 (152)
T ss_dssp             HHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33333333344444444444444444444444444444443

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=84.29  E-value=6.4  Score=27.47  Aligned_cols=51  Identities=10%  Similarity=0.008  Sum_probs=22.4

Q ss_pred             HHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 014507          284 GYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG  340 (423)
Q Consensus       284 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  340 (423)
                      .+...|++++|..+.+.+.    .||...|-++..  .+.|..+++...+.++..+|
T Consensus        48 SLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~rL~~la~sg   98 (115)
T 2uwj_G           48 SLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDRRLAGLGGSS   98 (115)
T ss_dssp             HHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS
T ss_pred             HHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC
Confidence            3444455555544443333    445544444332  24444444444444444433

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=84.22  E-value=11  Score=28.03  Aligned_cols=67  Identities=10%  Similarity=0.094  Sum_probs=33.0

Q ss_pred             CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          307 TPDARMCALLINAYQMAGQ---SQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       307 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                      .|+..+--.+.-++.+..+   ..++..++++..+.+-.-....+-.+.-++.+.|+++.|.+..+.+.+
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~  106 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  106 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            3444443333444444433   234555555555433111234444555566666666666666666655

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=83.67  E-value=33  Score=33.18  Aligned_cols=253  Identities=8%  Similarity=-0.051  Sum_probs=134.5

Q ss_pred             HHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507          140 AVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG  219 (423)
Q Consensus       140 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  219 (423)
                      .-+..+.+.+++.....++     ...+.+...-.....+....|+-.+|......+-..|-. ....+..++..+.+.|
T Consensus        77 ~~l~~l~~~~~w~~~l~~~-----~~~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~-~p~~c~~l~~~~~~~g  150 (618)
T 1qsa_A           77 RFVNELARREDWRGLLAFS-----PEKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QPNACDKLFSVWRASG  150 (618)
T ss_dssp             HHHHHHHHTTCHHHHHHHC-----CSCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CCTHHHHHHHHHHHTT
T ss_pred             HHHHHHHhCCCHHHHHHhc-----cCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CcHHHHHHHHHHHHCC
Confidence            3444555555555443322     112345555555677777788877777776666655433 4456777888887777


Q ss_pred             CHHH--HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhC---------CCCCCHH---HHHHHHHHH
Q 014507          220 NLKM--AEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQ---------EVYVGSE---VYKALLRGY  285 (423)
Q Consensus       220 ~~~~--A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---------~~~p~~~---~~~~li~~~  285 (423)
                      .+..  ...=++.+...|   +...-..++... . .+.....+.+..+.+.         .+.++..   .+...+.-+
T Consensus       151 ~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l-~-~~~~~~a~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~~rl  225 (618)
T 1qsa_A          151 KQDPLAYLERIRLAMKAG---NTGLVTVLAGQM-P-ADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASV  225 (618)
T ss_dssp             CSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC-C-GGGHHHHHHHHHHHHCGGGHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC-C-HHHHHHHHHHHHHHhChHhHHHHHhccCCChhhHHHHHHHHHHH
Confidence            5433  333334444443   121111121111 0 0010000111111111         0122222   122223333


Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 014507          286 SMNGNSEGAQRVFEAIQFAGITPDARMCA----LLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQL  361 (423)
Q Consensus       286 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  361 (423)
                      .+ .+.+.|...+......+ ..+.....    .+.......+...++...+......  .++.....-.+....+.|++
T Consensus       226 ar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~e~~~r~Alr~~d~  301 (618)
T 1qsa_A          226 AR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR--SQSTSLIERRVRMALGTGDR  301 (618)
T ss_dssp             HH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT--CCCHHHHHHHHHHHHHHTCH
T ss_pred             Hh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc--CCChHHHHHHHHHHHHCCCH
Confidence            33 37899999998887543 22333332    2333333445355667777665543  24444444455555678999


Q ss_pred             HHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          362 NRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       362 ~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      +.|...|+.|..... ....-.--+.+++...|+.++|..+|+++..
T Consensus       302 ~~a~~~~~~l~~~~~-~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~  347 (618)
T 1qsa_A          302 RGLNTWLARLPMEAK-EKDEWRYWQADLLLERGREAEAKEILHQLMQ  347 (618)
T ss_dssp             HHHHHHHHHSCTTGG-GSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccccc-ccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence            999999998866422 2344344577888899999999999998764

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=83.30  E-value=12  Score=27.80  Aligned_cols=70  Identities=14%  Similarity=0.059  Sum_probs=41.8

Q ss_pred             ccCCCHHHHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          165 SFEANIRDYTKIIHGYGKKMQ---IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       165 ~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      +-.|+..+--....++.++.+   ..+++.+++++.+.+..-....+--+.-++.+.|++++|.+..+.+.+.
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            344555544444445555443   4466777777766543223444555666777788888888777777764

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=81.96  E-value=0.037  Score=51.12  Aligned_cols=241  Identities=11%  Similarity=0.039  Sum_probs=155.5

Q ss_pred             eeeeeeccccchHHH-HHHhcCChhhhhhhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCChhhHHHHHHHHHhcCCc
Q 014507           75 FTWIQIGPNITEEQK-QAISQFPRKMTKRCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPRRADWLAVLKQLKLMEHP  151 (423)
Q Consensus        75 ~~~~~l~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~~~~~ll~~~~~~~~~  151 (423)
                      .+|..+..+.-.++. ..|..-|  ++..|...|..+|....+.|.+++.+..+.-.  ...+...=+.|+-+|++.++.
T Consensus        55 ~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL  132 (624)
T 3lvg_A           55 AVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRL  132 (624)
T ss_dssp             CCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSS
T ss_pred             cHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcH
Confidence            467777665554322 2222222  23356677888999999999999988877544  223344556888999998887


Q ss_pred             hHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC--------------------CCCCHHHHHHH
Q 014507          152 LYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRG--------------------FICDQVTLTVM  211 (423)
Q Consensus       152 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------------------~~p~~~~~~~l  211 (423)
                      .+-+.+.       ..||..-...+.+-|...|.++.|.-+|..+..-.                    -.-++.||..+
T Consensus       133 ~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV  205 (624)
T 3lvg_A          133 AELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEV  205 (624)
T ss_dssp             STTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHH
T ss_pred             HHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHH
Confidence            7654332       24666666677777777777777776665543210                    11266789999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 014507          212 VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS  291 (423)
Q Consensus       212 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  291 (423)
                      -.+|...+++..|...--.+.-.     ..-...++..|-..|.+++...+++.-.... .....+|+-|.-.|++- ++
T Consensus       206 ~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~P  278 (624)
T 3lvg_A          206 CFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KP  278 (624)
T ss_dssp             THHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CT
T ss_pred             HHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CH
Confidence            99999999988775554444422     1223346677888899999888888776432 24677888888888886 45


Q ss_pred             HHHHHHHHHHHHC-CCCC------CHHHHHHHHHHHHHcCCHHHHHH
Q 014507          292 EGAQRVFEAIQFA-GITP------DARMCALLINAYQMAGQSQKAYT  331 (423)
Q Consensus       292 ~~a~~~~~~m~~~-g~~p------~~~~~~~li~~~~~~g~~~~a~~  331 (423)
                      ++..+.++....+ +++.      ....|..++-.|.+-.+++.|..
T Consensus       279 eKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          279 QKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             THHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            5555554433222 2221      23457888888888888887654

>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}

Probab=81.76  E-value=11  Score=26.34  Aligned_cols=80  Identities=13%  Similarity=0.023  Sum_probs=52.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 014507          289 GNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFL  368 (423)
Q Consensus       289 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  368 (423)
                      -..++|..|-+.+...+.  ....--+-+..+.+.|++++|..+.+.+.    .||...|..|-..  +.|..+++...+
T Consensus        21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce~--rlGl~s~le~rL   92 (116)
T 2p58_C           21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLA----YPDLEPWLALCEY--RLGLGSALESRL   92 (116)
T ss_dssp             TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSC----CGGGHHHHHHHHH--HHTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHHH--hcccHHHHHHHH
Confidence            356777777777776542  22222223455778888988888876654    6888877666543  678878888777


Q ss_pred             HHHHHCCC
Q 014507          369 IDLERDGF  376 (423)
Q Consensus       369 ~~m~~~g~  376 (423)
                      .++...|-
T Consensus        93 ~~la~sg~  100 (116)
T 2p58_C           93 NRLARSQD  100 (116)
T ss_dssp             HHHTTCCC
T ss_pred             HHHHhCCC
Confidence            77776653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=80.09  E-value=55  Score=33.34  Aligned_cols=150  Identities=11%  Similarity=0.116  Sum_probs=66.0

Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHcCC
Q 014507          181 GKKMQIQNAENTLLAMKRRGFICDQVTLTVMVV--MYSKAGNLKMAEETFEEIKLLGEPLDKRSYG---SMVMAYVRAGM  255 (423)
Q Consensus       181 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~--~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~---~li~~~~~~~~  255 (423)
                      .-.|+-+....++..+.+..   +......+..  ++...|+.+.+..+.+.+.... .| ..-|.   ++..+|+..|+
T Consensus       501 vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn  575 (963)
T 4ady_A          501 LGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGN  575 (963)
T ss_dssp             TTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCC
T ss_pred             cccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCC
Confidence            34455555555555554431   2222222222  2334566666666666665431 11 11122   23344555666


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHH
Q 014507          256 LDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQS-QKAYTAFQ  334 (423)
Q Consensus       256 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~  334 (423)
                      .....++++.+.+... .+..-...+.-++...|+.+.+.++++.+...+ .|.+..--.+..+....|.. .++.+++.
T Consensus       576 ~~aIq~LL~~~~~d~~-d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~  653 (963)
T 4ady_A          576 NSAVKRLLHVAVSDSN-DDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLD  653 (963)
T ss_dssp             HHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhccCCc-HHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            6555556666655321 122222222333334555555555555444432 23333222333333333332 35555666


Q ss_pred             HHH
Q 014507          335 NMR  337 (423)
Q Consensus       335 ~m~  337 (423)
                      .+.
T Consensus       654 ~L~  656 (963)
T 4ady_A          654 PLT  656 (963)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	423
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.83
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.74
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.56
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.22
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.22
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.19
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.15
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.15
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.13
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.0
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.95
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.82
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.77
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.61
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.52
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.52
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.5
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.45
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.36
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.35
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.34
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.33
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.3
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.28
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.11
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.06
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.06
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.05
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.97
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.91
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.82
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.81
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.8
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.79
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.78
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.74
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.74
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.65
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.65
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.64
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.62
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.51
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.51
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.4
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.37
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.37
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.31
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.27
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.2
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.99
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.93
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.38
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.26
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.06
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.9
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.58
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	92.78
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	91.44
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	90.31
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	87.72
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	86.82

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.2e-17  Score=152.28  Aligned_cols=354  Identities=12%  Similarity=0.031  Sum_probs=232.0

Q ss_pred             hhhhhhcCchhhHhhhhhcccccccccCCCcceeeeeeccccch-HHHHHHhcCChhhhh---hhHHHHHHHHhccCCCC
Q 014507           43 AKWSRSLRSGPALEAIKAEDMGKTQVKDDTSMFTWIQIGPNITE-EQKQAISQFPRKMTK---RCKAFVKQIICVSPETG  118 (423)
Q Consensus        43 ~~~~~~~~~~~a~~~~~~~~m~~~g~~~~~~~~~~~~l~~~~~~-~~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g  118 (423)
                      ..+.+.|++++|+..  ++++.+.  .|+. ...+..+..++.+ ++.+.|...|++..+   .+..+|..+...+.+.|
T Consensus         7 ~~~~~~G~~~~A~~~--~~~~l~~--~p~~-~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g   81 (388)
T d1w3ba_           7 HREYQAGDFEAAERH--CMQLWRQ--EPDN-TGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERG   81 (388)
T ss_dssp             HHHHHHTCHHHHHHH--HHHHHHH--CTTC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHcCCHHHHHHH--HHHHHHh--CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhc
Confidence            334788999999888  8887753  5653 3455556666654 556888888887754   34567888888899999


Q ss_pred             CHHHHHHHHHHhc--CC-ChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHH
Q 014507          119 NLSDLLAAWVRFM--KP-RRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLA  195 (423)
Q Consensus       119 ~~~~a~~~~~~~~--~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  195 (423)
                      ++++|++.+....  .| +............................... .................+....+...+..
T Consensus        82 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHHHH
Confidence            9999999998863  22 33333344444444444444444333333222 23334444455555666666676666666


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 014507          196 MKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGS  275 (423)
Q Consensus       196 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  275 (423)
                      ....... +...+..+...+...|++++|...+++..+.. +-+..+|..+...+...|++++|...+++..+.+.. +.
T Consensus       161 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~  237 (388)
T d1w3ba_         161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HA  237 (388)
T ss_dssp             HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CH
T ss_pred             hhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HH
Confidence            6555322 55666667777777777777777777776653 335566777777777777777777777777665443 55


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507          276 EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC  355 (423)
Q Consensus       276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  355 (423)
                      ..+..+...+.+.|++++|...|++..+.. +-+..+|..+...+...|++++|.+.++...... +.+...+..+...+
T Consensus       238 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  315 (388)
T d1w3ba_         238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIK  315 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHH
Confidence            666667777777777777777777766542 2256667777777777777777777777766542 34566667777777


Q ss_pred             HHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Q 014507          356 EKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGL  408 (423)
Q Consensus       356 ~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~  408 (423)
                      ...|++++|.+.+++..+.. +-+..++..+..+|.+.|++++|.+.|++..+
T Consensus       316 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  367 (388)
T d1w3ba_         316 REQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR  367 (388)
T ss_dssp             HTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            77777777777777766532 23456677777777777777777777776544

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.1e-14  Score=132.31  Aligned_cols=313  Identities=10%  Similarity=-0.013  Sum_probs=221.0

Q ss_pred             HHHHHhcCChhhhh---hhHHHHHHHHhccCCCCCHHHHHHHHHHh--cCCC-hhhHHHHHHHHHhcCCchHHHHHHHHH
Q 014507           88 QKQAISQFPRKMTK---RCKAFVKQIICVSPETGNLSDLLAAWVRF--MKPR-RADWLAVLKQLKLMEHPLYLQVAELAL  161 (423)
Q Consensus        88 ~~~~a~~~~~~m~~---~~~~~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~  161 (423)
                      +.+.|.+.++++.+   .+...+..+...+.+.|++++|++.|++.  ..|+ ..++..+...+.+.|++++|...+...
T Consensus        14 ~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~   93 (388)
T d1w3ba_          14 DFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA   93 (388)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccc
Confidence            34555555555433   23445555555555666666666666554  2232 245555555556666666665555555


Q ss_pred             hhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 014507          162 LEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKR  241 (423)
Q Consensus       162 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~  241 (423)
                      .... +.+..............+....+............. ...............+....+...+.+..... +-+..
T Consensus        94 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  170 (388)
T d1w3ba_          94 LRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAV  170 (388)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             cccc-cccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhhccC-cchhH
Confidence            4433 223333333333344444444444444444333222 33344445555566777777777777777654 34677


Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014507          242 SYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQ  321 (423)
Q Consensus       242 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  321 (423)
                      .+..+...+...|+++.|...+++..+.... +...+..+...+...|++++|...++.....+ ..+...+..+...+.
T Consensus       171 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~  248 (388)
T d1w3ba_         171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVHGNLACVYY  248 (388)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHHHHHHHHHHH
Confidence            8888999999999999999999998886543 67789999999999999999999999988764 457788888999999


Q ss_pred             HcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHH
Q 014507          322 MAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVE  400 (423)
Q Consensus       322 ~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~  400 (423)
                      +.|++++|.+.|++..+.  .| +..++..+...+...|++++|.+.++..... .+.+...+..+...+.+.|++++|.
T Consensus       249 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~  325 (388)
T d1w3ba_         249 EQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAV  325 (388)
T ss_dssp             HTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCCHHHHH
Confidence            999999999999999874  45 4778999999999999999999999998875 4567888999999999999999999


Q ss_pred             HHHHHhcc
Q 014507          401 HVLREYGL  408 (423)
Q Consensus       401 ~~~~~m~~  408 (423)
                      +.|++..+
T Consensus       326 ~~~~~al~  333 (388)
T d1w3ba_         326 RLYRKALE  333 (388)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHHH
Confidence            99998765

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=7.4e-12  Score=110.96  Aligned_cols=256  Identities=12%  Similarity=0.039  Sum_probs=180.6

Q ss_pred             HHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507          141 VLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGN  220 (423)
Q Consensus       141 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  220 (423)
                      ....+.+.|++++|...++..++.. +-+...|..+..++...|++++|...|++..+.... +...|..+...|...|+
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~  102 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESL  102 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccc
Confidence            3445566777777777777776654 335677777788888888888888888887776433 56777777788888888


Q ss_pred             HHHHHHHHHHHHHcCCC--------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCCHHHHHHHHHHH
Q 014507          221 LKMAEETFEEIKLLGEP--------------LDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQE-VYVGSEVYKALLRGY  285 (423)
Q Consensus       221 ~~~A~~~~~~m~~~g~~--------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~  285 (423)
                      +++|.+.+++.......              .+.......+..+...+.++++...+.+..+.. -.++..++..+...+
T Consensus       103 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~  182 (323)
T d1fcha_         103 QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLF  182 (323)
T ss_dssp             HHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHH
T ss_pred             ccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            88888888777653210              001111122233445566777888888776543 234677888888999


Q ss_pred             HhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHH
Q 014507          286 SMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRA  364 (423)
Q Consensus       286 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a  364 (423)
                      ...|++++|...+++..... +-+...|..+..+|...|++++|.+.|++..+.  .| +...+..+..+|.+.|++++|
T Consensus       183 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         183 NLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREA  259 (323)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHH--hhccHHHHHHHHHHHHHCCCHHHH
Confidence            99999999999999887653 336788889999999999999999999998874  45 467888899999999999999


Q ss_pred             HHHHHHHHHC----------CCCcCHHHHHHHHHHHHHcCCHHHHHH
Q 014507          365 LEFLIDLERD----------GFMVGKEASCTLAAWFKRLGVVEEVEH  401 (423)
Q Consensus       365 ~~~~~~m~~~----------g~~~~~~~~~~l~~~~~~~g~~~~A~~  401 (423)
                      .+.|++..+.          ........+..+-.++...|+.+.+..
T Consensus       260 ~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~  306 (323)
T d1fcha_         260 VEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  306 (323)
T ss_dssp             HHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            9999987752          111233455666667776777665443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=2.5e-12  Score=114.09  Aligned_cols=230  Identities=12%  Similarity=-0.013  Sum_probs=184.7

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014507          175 KIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAG  254 (423)
Q Consensus       175 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~  254 (423)
                      .....+.+.|++++|...|++..+..+. +..+|..+...+...|++++|...|.+..+.. +-+...+..+...|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence            3566788999999999999999988544 78899999999999999999999999998864 346788999999999999


Q ss_pred             ChhHHHHHHHHHHhCCCCC--------------CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHH
Q 014507          255 MLDRGEVLLREMDAQEVYV--------------GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG-ITPDARMCALLINA  319 (423)
Q Consensus       255 ~~~~a~~~~~~m~~~~~~p--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~  319 (423)
                      ++++|.+.+++........              +.......+..+...+...+|.+.+....... -.++...+..+...
T Consensus       102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~  181 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVL  181 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHH
Confidence            9999999999987643210              01111222334445567788888888776532 23467888899999


Q ss_pred             HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHH
Q 014507          320 YQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEV  399 (423)
Q Consensus       320 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A  399 (423)
                      +...|++++|...|++..+.. +-+...|..+...+...|++++|.+.+++..+.. +-+...+..+..+|.+.|++++|
T Consensus       182 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A  259 (323)
T d1fcha_         182 FNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREA  259 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHHHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHH
Confidence            999999999999999988743 2247788999999999999999999999988752 33577899999999999999999


Q ss_pred             HHHHHHhcc
Q 014507          400 EHVLREYGL  408 (423)
Q Consensus       400 ~~~~~~m~~  408 (423)
                      .+.|++..+
T Consensus       260 ~~~~~~al~  268 (323)
T d1fcha_         260 VEHFLEALN  268 (323)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999987654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.5e-09  Score=93.95  Aligned_cols=214  Identities=7%  Similarity=-0.057  Sum_probs=115.1

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAG-NLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      ..|+.+...+.+.+.+++|+.+++++.+..+. +...|+....++...| ++++|+..+++..+.. +-+..+|..+...
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~  121 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence            34444555555566666666666666665333 4555565555555544 3666666666665543 2345566666666


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----
Q 014507          250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ----  325 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----  325 (423)
                      +.+.|++++|...++++.+.... +...|..+...+.+.|++++|.+.++.+.+.+ +-+...|+.+..++.+.+.    
T Consensus       122 ~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         122 VEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC-CccHHHHHHHHHHHHHccccchh
Confidence            66666666666666666664433 55566666666666666666666666665542 2245555555555444443    


Q ss_pred             --HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-cCHHHHHHHHHHHH
Q 014507          326 --SQKAYTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLERDGFM-VGKEASCTLAAWFK  391 (423)
Q Consensus       326 --~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~~~~~~~~l~~~~~  391 (423)
                        +++|.+.+....+.  .| +...|..+...+.. ...+++.+.++...+.... .+...+..+...|.
T Consensus       200 ~~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKL--VPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             hhhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence              45566666555543  23 34445444443332 3345555555555442111 23444455555543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.22  E-value=5.6e-09  Score=91.44  Aligned_cols=185  Identities=10%  Similarity=-0.005  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 014507          221 LKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEA  300 (423)
Q Consensus       221 ~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  300 (423)
                      .++|..+|++..+...+.+...|...+....+.|+++.|..+|+++.+........+|...+..+.+.|+.+.|.++|+.
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            45556666665544334444555555566666666666666666665543332344566666666666666666666666


Q ss_pred             HHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCc
Q 014507          301 IQFAGITPDARMCALLINA-YQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD-GFMV  378 (423)
Q Consensus       301 m~~~g~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~~  378 (423)
                      +.+.+. .+...|...... +...|+.+.|..+|+.+.+. .+-+...|...+..+.+.|+++.|..+|++..+. +..|
T Consensus       160 al~~~~-~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         160 AREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHhCC-CcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            655431 122333222222 23345666666666666553 1223555666666666666666666666666554 2232


Q ss_pred             C--HHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          379 G--KEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       379 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                      .  ...|...+..-.+.|+.+.+.++++++.
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~  268 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRF  268 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            2  3455555555555666666666666553

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.3e-08  Score=87.60  Aligned_cols=213  Identities=10%  Similarity=-0.048  Sum_probs=129.6

Q ss_pred             HHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507          138 WLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKM-QIQNAENTLLAMKRRGFICDQVTLTVMVVMYS  216 (423)
Q Consensus       138 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  216 (423)
                      |+.+-..+.+.+..++|...+..+++.+ +-+...|+....++...| ++++|+..++...+.... +..+|..+...+.
T Consensus        46 ~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~~~  123 (315)
T d2h6fa1          46 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHHHH
Confidence            3334444445555555555555555543 234555666666666654 467777777777666444 6677777777777


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCC------
Q 014507          217 KAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGN------  290 (423)
Q Consensus       217 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~------  290 (423)
                      +.|++++|+..++++.+.. +.+...|..+...+.+.|++++|.+.++++.+.+.. +...|+.+...+.+.+.      
T Consensus       124 ~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~~  201 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRAV  201 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHHH
T ss_pred             hhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhhh
Confidence            7777777777777777654 345677777777777777777777777777776544 56666666555555444      


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH
Q 014507          291 SEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE-PSDKCVALILSACE  356 (423)
Q Consensus       291 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~  356 (423)
                      +++|.+.+....+.. +.+...|+.+...+.. ...+++.+.++...+.... .+...+..++..|.
T Consensus       202 ~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~  266 (315)
T d2h6fa1         202 LEREVQYTLEMIKLV-PHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYE  266 (315)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHH
T ss_pred             hHHhHHHHHHHHHhC-CCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHH
Confidence            466777777666542 2356666666555443 3356666776666553222 23445555555554

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.15  E-value=7.5e-08  Score=85.08  Aligned_cols=291  Identities=12%  Similarity=0.020  Sum_probs=208.9

Q ss_pred             HhccCCCCCHHHHHHHHHHh--cCCCh------hhHHHHHHHHHhcCCchHHHHHHHHHhhcccC-C----CHHHHHHHH
Q 014507          111 ICVSPETGNLSDLLAAWVRF--MKPRR------ADWLAVLKQLKLMEHPLYLQVAELALLEESFE-A----NIRDYTKII  177 (423)
Q Consensus       111 l~~~~~~g~~~~a~~~~~~~--~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~li  177 (423)
                      ...+...|++++|++.+++.  ..|+.      .++..+...+...|++++|...+....+.... +    ....+..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            34566899999999999986  33442      35666778888999999999988877653221 1    234566677


Q ss_pred             HHHHccCCHHHHHHHHHHHHHc----CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHH
Q 014507          178 HGYGKKMQIQNAENTLLAMKRR----GFIC---DQVTLTVMVVMYSKAGNLKMAEETFEEIKLLG----EPLDKRSYGSM  246 (423)
Q Consensus       178 ~~~~~~~~~~~a~~~~~~m~~~----g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~~~~~~~~~l  246 (423)
                      ..+...|++..+...+......    +...   ....+..+...+...|+++.+...+.......    ......++..+
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  178 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            7888999999999988876542    2211   12355667788899999999999998887642    22334566777


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhC----CCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCC---CCHHHHHHHH
Q 014507          247 VMAYVRAGMLDRGEVLLREMDAQ----EVYV--GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGIT---PDARMCALLI  317 (423)
Q Consensus       247 i~~~~~~~~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---p~~~~~~~li  317 (423)
                      ...+...++...+...+.+....    +..+  ....+..+...+...|+.++|...++........   .....+..+.
T Consensus       179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la  258 (366)
T d1hz4a_         179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  258 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            77888899999998888776542    1111  1235666777889999999999999887653221   1345677788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCc----CHHHHH
Q 014507          318 NAYQMAGQSQKAYTAFQNMRK----AGLEPS-DKCVALILSACEKENQLNRALEFLIDLERD----GFMV----GKEASC  384 (423)
Q Consensus       318 ~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~~----~~~~~~  384 (423)
                      .++...|++++|...++....    .+..|+ ...+..+...+...|++++|.+.+++..+.    |...    ....+.
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~  338 (366)
T d1hz4a_         259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMA  338 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHH
Confidence            899999999999999998764    344554 457788888999999999999999987542    3321    234456


Q ss_pred             HHHHHHHHcCCHHHHHH
Q 014507          385 TLAAWFKRLGVVEEVEH  401 (423)
Q Consensus       385 ~l~~~~~~~g~~~~A~~  401 (423)
                      .++..+...++.+++.+
T Consensus       339 ~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         339 QQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHTTCSCHHHH
T ss_pred             HHHHHHHhcCCChHHHH
Confidence            67777777787766644

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.15  E-value=2e-08  Score=87.84  Aligned_cols=186  Identities=11%  Similarity=0.044  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHH
Q 014507          186 IQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLRE  265 (423)
Q Consensus       186 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  265 (423)
                      .++|..+|++..+...+.+...|...+....+.|+++.|..+|+++.+.........|...+..+.+.|+.+.|.++|++
T Consensus        80 ~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~  159 (308)
T d2onda1          80 SDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKK  159 (308)
T ss_dssp             HHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            35555666665544333344555555566666666666666666665543222233556666666666666666666666


Q ss_pred             HHhCCCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCC
Q 014507          266 MDAQEVYVGSEVYKALLRG-YSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG-LEP  343 (423)
Q Consensus       266 m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p  343 (423)
                      +.+.+.. +...|...... +...|+.+.|..+|+.+.... +.+...|...+..+.+.|+++.|..+|++..+.. ..|
T Consensus       160 al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         160 AREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             HHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCG
T ss_pred             HHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCh
Confidence            6554433 22233222222 233456666666666665541 2345566666666666666666666666655532 233


Q ss_pred             C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          344 S--DKCVALILSACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       344 ~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~  373 (423)
                      +  ...|...+.--...|+.+.+.++++++.+
T Consensus       238 ~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~  269 (308)
T d2onda1         238 EKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             GGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2  33555555555566666666666665544

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.13  E-value=5.1e-08  Score=86.19  Aligned_cols=265  Identities=13%  Similarity=-0.023  Sum_probs=195.3

Q ss_pred             HHHHHhcCCchHHHHHHHHHhhcccCCC----HHHHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHH
Q 014507          142 LKQLKLMEHPLYLQVAELALLEESFEAN----IRDYTKIIHGYGKKMQIQNAENTLLAMKRRG----FIC-DQVTLTVMV  212 (423)
Q Consensus       142 l~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p-~~~~~~~li  212 (423)
                      -..+...|+++.|...++..++.....+    ...+..+...+...|++++|...+++..+..    ..+ ....+..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            3455679999999999998877543322    3467778889999999999999999886531    111 134566777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH----cCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHhC----CCCCCHHHHHHH
Q 014507          213 VMYSKAGNLKMAEETFEEIKL----LGEPLD---KRSYGSMVMAYVRAGMLDRGEVLLREMDAQ----EVYVGSEVYKAL  281 (423)
Q Consensus       213 ~~~~~~g~~~~A~~~~~~m~~----~g~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~p~~~~~~~l  281 (423)
                      ..+...|++..+...+.+...    .+....   ...+..+...+...|+++.+...+......    +.......+..+
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~  178 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML  178 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            888999999999999988754    221211   235666778889999999999999888753    233345667777


Q ss_pred             HHHHHhCCCHHHHHHHHHHHHHC--CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHH
Q 014507          282 LRGYSMNGNSEGAQRVFEAIQFA--GITP----DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLE---PSDKCVALIL  352 (423)
Q Consensus       282 i~~~~~~g~~~~a~~~~~~m~~~--g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~---p~~~~~~~li  352 (423)
                      ...+...++...+...+......  ....    ....+......+...|++++|...++...+....   .....+..+.
T Consensus       179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la  258 (366)
T d1hz4a_         179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA  258 (366)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence            78888999999999888776541  1111    2334666777888999999999999887653221   2245667788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHH----CCCCcC-HHHHHHHHHHHHHcCCHHHHHHHHHHh
Q 014507          353 SACEKENQLNRALEFLIDLER----DGFMVG-KEASCTLAAWFKRLGVVEEVEHVLREY  406 (423)
Q Consensus       353 ~~~~~~g~~~~a~~~~~~m~~----~g~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m  406 (423)
                      ..+...|++++|...+++...    .+..|+ ...+..+...|.+.|++++|.+.+++-
T Consensus       259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~A  317 (366)
T d1hz4a_         259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA  317 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            899999999999999998763    244443 567888899999999999999999864

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.00  E-value=1.4e-08  Score=86.13  Aligned_cols=196  Identities=10%  Similarity=-0.049  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507          171 RDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAY  250 (423)
Q Consensus       171 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~  250 (423)
                      .+|..+...|.+.|++++|...|++..+.... +..+|+.+..+|.+.|++++|+..|++..+.. +-+..++..+..++
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~  115 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHH-hhhhhhHHHHHHHH
Confidence            35555666677777777777777777665433 56667777777777777777777777776653 22455666666777


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----H
Q 014507          251 VRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQ----S  326 (423)
Q Consensus       251 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----~  326 (423)
                      ...|++++|...|+...+.... +......+..++.+.+..+.+..+........  ++...++ ++..+.....    .
T Consensus       116 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~  191 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD--KEQWGWN-IVEFYLGNISEQTLM  191 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSC--CCSTHHH-HHHHHTTSSCHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccc--hhhhhhh-HHHHHHHHHHHHHHH
Confidence            7777777777777776664322 33333334444444454444444444444321  1111111 1122111111    1


Q ss_pred             HHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          327 QKAYTAFQNMRKAGLEPS-DKCVALILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       327 ~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      +.+...+.....  ..|+ ..+|..+...+...|++++|...|++..+.
T Consensus       192 ~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         192 ERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             HHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            111111111111  1122 234555666666677777777777766653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=4.1e-08  Score=83.15  Aligned_cols=195  Identities=9%  Similarity=-0.090  Sum_probs=104.3

Q ss_pred             hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014507          136 ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMY  215 (423)
Q Consensus       136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  215 (423)
                      .+|..+...+.+.|+.++|...+...++.. +-++.+|+.+..++.+.|++++|+..|++..+.... +..++..+...|
T Consensus        38 ~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~  115 (259)
T d1xnfa_          38 QLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIAL  115 (259)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHH
Confidence            345555566666777777777766666543 345666777777777777777777777777665433 455666666777


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH---
Q 014507          216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSE---  292 (423)
Q Consensus       216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~---  292 (423)
                      ...|++++|...|++..+.. +.+......+..++.+.+..+.+..+..........+.  .++ ++..+.......   
T Consensus       116 ~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~~~~  191 (259)
T d1xnfa_         116 YYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-IVEFYLGNISEQTLM  191 (259)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-HHHHHTTSSCHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhh-HHHHHHHHHHHHHHH
Confidence            77777777777777766653 23444444444444455554444444444444322211  111 122222211111   


Q ss_pred             -HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          293 -GAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       293 -~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                       .+...+......  .| ...+|..+...|...|++++|.+.|+....
T Consensus       192 ~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  237 (259)
T d1xnfa_         192 ERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVA  237 (259)
T ss_dssp             HHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             111111111110  11 223455566667777777777777776665

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.82  E-value=1.8e-08  Score=89.14  Aligned_cols=273  Identities=8%  Similarity=-0.052  Sum_probs=183.2

Q ss_pred             HHHHHHhccCCCCCHHHHHHHHHHh--cCCChh-hHHHH---HHHHHhcCC-------chHHHHHHHHHhhcccCCCHHH
Q 014507          106 FVKQIICVSPETGNLSDLLAAWVRF--MKPRRA-DWLAV---LKQLKLMEH-------PLYLQVAELALLEESFEANIRD  172 (423)
Q Consensus       106 ~~~~ll~~~~~~g~~~~a~~~~~~~--~~p~~~-~~~~l---l~~~~~~~~-------~~~a~~~~~~~~~~~~~~~~~~  172 (423)
                      ....++......+..++|++++++.  ..|+.. .|+..   +..+...+.       .+.+..+++..++.. +.+...
T Consensus        31 ~~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~  109 (334)
T d1dcea1          31 ATQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGT  109 (334)
T ss_dssp             HHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHH
Confidence            3444555555555568999999987  467653 34433   333333333       455666666666543 456677


Q ss_pred             HHHHHHHHHccC--CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          173 YTKIIHGYGKKM--QIQNAENTLLAMKRRGFICDQVTLT-VMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       173 ~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      |.....++...+  ++++|...++...+.... +...+. .....+...+.+++|+..++...+.. +-+...|+.+...
T Consensus       110 ~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~-p~~~~a~~~l~~~  187 (334)
T d1dcea1         110 WHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCL  187 (334)
T ss_dssp             HHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHH
T ss_pred             HHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcC-CCCHHHHHHHHHH
Confidence            777766666655  478899999888877433 555554 34466667888999999998888775 4477888888888


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 014507          250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKA  329 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  329 (423)
                      +.+.|++++|...++...+..  |+   .......+...+..+++...+....... .++...+..+...+...|+.++|
T Consensus       188 ~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a  261 (334)
T d1dcea1         188 LPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELES  261 (334)
T ss_dssp             HHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHH
T ss_pred             HHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHH
Confidence            999998888776665544421  11   1223334455566677777777766553 34555666777788888899999


Q ss_pred             HHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcC-HHHHHHHHHHHH
Q 014507          330 YTAFQNMRKAGLEP-SDKCVALILSACEKENQLNRALEFLIDLERDGFMVG-KEASCTLAAWFK  391 (423)
Q Consensus       330 ~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~-~~~~~~l~~~~~  391 (423)
                      .+.+.+..+..  | +...+..+...+...|++++|.+.+++..+  +.|+ ...|..|...+.
T Consensus       262 ~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~~~~~  321 (334)
T d1dcea1         262 CKELQELEPEN--KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLRSKFL  321 (334)
T ss_dssp             HHHHHHHCTTC--HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhC--chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHHHHHh
Confidence            99888877543  4 456777888888899999999999999887  4564 445555555444

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.77  E-value=3e-08  Score=87.68  Aligned_cols=251  Identities=7%  Similarity=-0.141  Sum_probs=165.1

Q ss_pred             cCCchHHHHHHHHHhhcccCCCHHHHHHHHHH----------HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014507          148 MEHPLYLQVAELALLEESFEANIRDYTKIIHG----------YGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK  217 (423)
Q Consensus       148 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~----------~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  217 (423)
                      ....++|..++...++..+ -+...|+..-..          +...|++++|+..++...+...+ +...|..+..++..
T Consensus        42 ~~~~~~al~~~~~~l~~~P-~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~  119 (334)
T d1dcea1          42 GELDESVLELTSQILGANP-DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR  119 (334)
T ss_dssp             TCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred             ccccHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHH
Confidence            3445677777777776542 233444332222          22334577888888888776443 66777777777666


Q ss_pred             cC--CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHH
Q 014507          218 AG--NLKMAEETFEEIKLLGEPLDKRSYG-SMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGA  294 (423)
Q Consensus       218 ~g--~~~~A~~~~~~m~~~g~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  294 (423)
                      .+  ++++|...+.+..+.. +++...+. .....+...+.++.|...++.+.+.+.. +...|+.+...+.+.|++++|
T Consensus       120 ~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred             hccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHH
Confidence            55  4788888888887764 33555544 3446666778888888888888887655 777888888888888888777


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 014507          295 QRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERD  374 (423)
Q Consensus       295 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  374 (423)
                      ...++.....  .|+   .......+...+..+++...+....... +++...+..+...+...|+..+|...+.+..+.
T Consensus       198 ~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~  271 (334)
T d1dcea1         198 GPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPE  271 (334)
T ss_dssp             SSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            6555443321  111   1223334555677777877777776643 233445556666777778888888888877664


Q ss_pred             CCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhccc
Q 014507          375 GFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLR  409 (423)
Q Consensus       375 g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~  409 (423)
                      . +.+...+..+...|.+.|++++|.+.|++..+-
T Consensus       272 ~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l  305 (334)
T d1dcea1         272 N-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  305 (334)
T ss_dssp             C-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH
T ss_pred             C-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            2 235667777888888888888888888877554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.61  E-value=1.4e-06  Score=74.96  Aligned_cols=60  Identities=15%  Similarity=0.099  Sum_probs=28.3

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRR----GFIC-DQVTLTVMVVMYSKAGNLKMAEETFEEI  231 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m  231 (423)
                      .|....+.|...+++++|.+.|.+..+.    +-.+ -..+|..+...|.+.|++++|.+.+++.
T Consensus        39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a  103 (290)
T d1qqea_          39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENA  103 (290)
T ss_dssp             HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHh
Confidence            3555555555555555555555554332    1111 1234444555555555555555555443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=3.9e-06  Score=67.16  Aligned_cols=99  Identities=9%  Similarity=-0.051  Sum_probs=44.3

Q ss_pred             CHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------------C
Q 014507          239 DKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG------------I  306 (423)
Q Consensus       239 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g------------~  306 (423)
                      +..+|..+..+|...|++++|.+.|++..+.+.. +...|..+..+|.+.|++++|.+.|++.....            .
T Consensus        35 ~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~  113 (192)
T d1hh8a_          35 HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGL  113 (192)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTB
T ss_pred             CHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhh
Confidence            3344444444444444444444444444443322 33344444444444444444444444433210            0


Q ss_pred             --CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          307 --TP-DARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       307 --~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                        .+ ...++..+..++.+.|++++|.+.+....+
T Consensus       114 ~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~  148 (192)
T d1hh8a_         114 QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS  148 (192)
T ss_dssp             CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence              00 123344455556666666666666666554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.52  E-value=2.6e-06  Score=73.17  Aligned_cols=210  Identities=10%  Similarity=-0.004  Sum_probs=126.7

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCChhHH
Q 014507          185 QIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL----GEPLD-KRSYGSMVMAYVRAGMLDRG  259 (423)
Q Consensus       185 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~~~-~~~~~~li~~~~~~~~~~~a  259 (423)
                      ++++|.++|.+.               ...|...|++++|.+.|.+..+.    +-.++ ..+|..+..+|.+.|++++|
T Consensus        32 ~~~~Aa~~y~~a---------------a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A   96 (290)
T d1qqea_          32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (290)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHH
Confidence            466666665543               45677778888888888777552    11111 34677778888888888888


Q ss_pred             HHHHHHHHhC----CC-CCCHHHHHHHHHHHHh-CCCHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCCHHH
Q 014507          260 EVLLREMDAQ----EV-YVGSEVYKALLRGYSM-NGNSEGAQRVFEAIQF----AGITP-DARMCALLINAYQMAGQSQK  328 (423)
Q Consensus       260 ~~~~~~m~~~----~~-~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~g~~~~  328 (423)
                      ...+++..+.    |. .....++..+...|.. .|++++|.+.+++..+    .+..+ ...++..+...+...|++++
T Consensus        97 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~  176 (290)
T d1qqea_          97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHH
Confidence            8887766542    11 1123455666666643 5888888888876543    22111 23456777788888888888


Q ss_pred             HHHHHHHHHHCCCC-----CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-c---CHHHHHHHHHHHHH--cCCH
Q 014507          329 AYTAFQNMRKAGLE-----PSD-KCVALILSACEKENQLNRALEFLIDLERDGFM-V---GKEASCTLAAWFKR--LGVV  396 (423)
Q Consensus       329 a~~~~~~m~~~~~~-----p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-~---~~~~~~~l~~~~~~--~g~~  396 (423)
                      |.+.|++.......     ... ..+...+..+...|+++.|...+++..+.... +   .......++.++..  .+.+
T Consensus       177 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~  256 (290)
T d1qqea_         177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQL  256 (290)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTH
T ss_pred             HHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHH
Confidence            88888887653211     111 22334445566778888888888877654211 1   12344556666654  3457


Q ss_pred             HHHHHHHHHhccc
Q 014507          397 EEVEHVLREYGLR  409 (423)
Q Consensus       397 ~~A~~~~~~m~~~  409 (423)
                      ++|...|+++.+-
T Consensus       257 ~eai~~y~~~~~l  269 (290)
T d1qqea_         257 SEHCKEFDNFMRL  269 (290)
T ss_dssp             HHHHHHHTTSSCC
T ss_pred             HHHHHHHHHHhhc
Confidence            7777777665543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.7e-06  Score=67.29  Aligned_cols=128  Identities=16%  Similarity=0.000  Sum_probs=98.6

Q ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507          172 DYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV  251 (423)
Q Consensus       172 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  251 (423)
                      .|+- ...+...|+++.|++.|+++    .+|+..+|..+...|...|++++|++.|++..+.. +-+...|..+..+|.
T Consensus         8 l~~~-g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~   81 (192)
T d1hh8a_           8 LWNE-GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   81 (192)
T ss_dssp             HHHH-HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHH
Confidence            3443 55567888899998888764    34577788888888999999999999998888875 446778888888899


Q ss_pred             HcCChhHHHHHHHHHHhCCCC--------------C-CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC
Q 014507          252 RAGMLDRGEVLLREMDAQEVY--------------V-GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAG  305 (423)
Q Consensus       252 ~~~~~~~a~~~~~~m~~~~~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g  305 (423)
                      +.|++++|...|++.......              + ...++..+..++.+.|++++|.+.++......
T Consensus        82 ~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~  150 (192)
T d1hh8a_          82 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  150 (192)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             hhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            999999998888887653110              1 13566777888999999999999999887653

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=8.3e-06  Score=59.31  Aligned_cols=91  Identities=14%  Similarity=-0.004  Sum_probs=52.1

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 014507          177 IHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGML  256 (423)
Q Consensus       177 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~  256 (423)
                      .+.+.+.|++++|+..|++..+.... +...|..+..+|...|++++|+..+.+..+.. +.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            44455556666666666665555322 45555556666666666666666666655543 33555555566666666666


Q ss_pred             hHHHHHHHHHHhC
Q 014507          257 DRGEVLLREMDAQ  269 (423)
Q Consensus       257 ~~a~~~~~~m~~~  269 (423)
                      ++|...|++..+.
T Consensus        88 ~~A~~~~~~a~~~  100 (117)
T d1elwa_          88 EEAKRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh
Confidence            6666666665554

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=1.3e-05  Score=61.86  Aligned_cols=91  Identities=10%  Similarity=-0.047  Sum_probs=49.2

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCh
Q 014507          177 IHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGML  256 (423)
Q Consensus       177 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~  256 (423)
                      .+.+.+.|++++|...|++..+.... +...|..+...|...|++++|...|++..+.. +-+..+|..+..++...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCH
Confidence            34455555555555555555554322 45555555555555555555555555555543 23445555555555555555


Q ss_pred             hHHHHHHHHHHhC
Q 014507          257 DRGEVLLREMDAQ  269 (423)
Q Consensus       257 ~~a~~~~~~m~~~  269 (423)
                      ++|...+++..+.
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            5555555555553

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=1.7e-05  Score=61.16  Aligned_cols=91  Identities=18%  Similarity=0.103  Sum_probs=52.6

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCH
Q 014507          212 VVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNS  291 (423)
Q Consensus       212 i~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  291 (423)
                      ...|.+.|++++|...|++..+.. +-+...|..+..+|...|++++|...|++..+.... +..+|..+..++...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence            344556666666666666666553 334555666666666666666666666666554332 445556666666666666


Q ss_pred             HHHHHHHHHHHHC
Q 014507          292 EGAQRVFEAIQFA  304 (423)
Q Consensus       292 ~~a~~~~~~m~~~  304 (423)
                      ++|...+++....
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            6666666655543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.34  E-value=1.2e-05  Score=58.39  Aligned_cols=61  Identities=20%  Similarity=0.019  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          311 RMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLE  372 (423)
Q Consensus       311 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  372 (423)
                      ..|..+..+|...|++++|+..++...+.+ +.+...|..+..++...|++++|...+++..
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~   98 (117)
T d1elwa_          38 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFEEAKRTYEEGL   98 (117)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             hhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence            334444444444444444444444433321 1223333344444444444444444444433

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=7.3e-06  Score=65.85  Aligned_cols=98  Identities=9%  Similarity=-0.066  Sum_probs=60.5

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHH
Q 014507          203 CDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALL  282 (423)
Q Consensus       203 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  282 (423)
                      |+...+......|.+.|++++|+..|++..+.. +.+...|..+..+|.+.|++++|...|++..+.... +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            455555555666666666666666666665543 345566666666666666666666666666654322 455666666


Q ss_pred             HHHHhCCCHHHHHHHHHHHH
Q 014507          283 RGYSMNGNSEGAQRVFEAIQ  302 (423)
Q Consensus       283 ~~~~~~g~~~~a~~~~~~m~  302 (423)
                      .+|.+.|++++|...|+...
T Consensus        80 ~~~~~l~~~~~A~~~~~~al   99 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAY   99 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHH
Confidence            66666666666666666554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=7.3e-06  Score=65.84  Aligned_cols=100  Identities=10%  Similarity=-0.062  Sum_probs=84.8

Q ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507          167 EANIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSM  246 (423)
Q Consensus       167 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~l  246 (423)
                      .|++..+....+.+.+.|++++|+..|++..+..+. +...|..+..+|.+.|++++|+..|++..+.. +-+..+|..+
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~l   78 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL   78 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHH
Confidence            366677777888999999999999999998887543 78889999999999999999999999988753 3357789999


Q ss_pred             HHHHHHcCChhHHHHHHHHHHh
Q 014507          247 VMAYVRAGMLDRGEVLLREMDA  268 (423)
Q Consensus       247 i~~~~~~~~~~~a~~~~~~m~~  268 (423)
                      ..+|.+.|++++|...|++..+
T Consensus        79 g~~~~~l~~~~~A~~~~~~al~  100 (201)
T d2c2la1          79 GQCQLEMESYDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999988765

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.28  E-value=0.00072  Score=56.32  Aligned_cols=224  Identities=11%  Similarity=0.006  Sum_probs=136.4

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSK----AGNLKMAEETFEEIKLLGEPLDKRSYG  244 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~  244 (423)
                      |+..+..+...+.+.+++++|++.|++..+.|   +...+..|...|..    ..+...|..++......+   +.....
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~   74 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   74 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhh
Confidence            34455566666677778888888888877766   55566566666665    557777777777777654   334444


Q ss_pred             HHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014507          245 SMVMAYVR----AGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS----MNGNSEGAQRVFEAIQFAGITPDARMCALL  316 (423)
Q Consensus       245 ~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l  316 (423)
                      .+...+..    ..+.+.|...++...+.|...   ....+...+.    .......+...+.....   ..+...+..+
T Consensus        75 ~l~~~~~~~~~~~~~~~~a~~~~~~a~~~g~~~---a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~L  148 (265)
T d1ouva_          75 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAE---GCASLGGIYHDGKVVTRDFKKAVEYFTKACD---LNDGDGCTIL  148 (265)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH---HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH---TTCHHHHHHH
T ss_pred             ccccccccccccchhhHHHHHHHhhhhhhhhhh---HHHhhcccccCCCcccchhHHHHHHhhhhhc---ccccchhhhh
Confidence            44444433    345667777777777765431   2222222222    23456666666666655   3466666677


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507          317 INAYQM----AGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEK----ENQLNRALEFLIDLERDGFMVGKEASCTLAA  388 (423)
Q Consensus       317 i~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~  388 (423)
                      ...|..    ..+...+..+++...+.|   +......+...+..    ..+++.|..+|++..+.|   ++..+..|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~  222 (265)
T d1ouva_         149 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGA  222 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             hhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHH
Confidence            766665    345666777777666644   44455555555544    457778888888877765   3445556666


Q ss_pred             HHHH----cCCHHHHHHHHHHhcccC
Q 014507          389 WFKR----LGVVEEVEHVLREYGLRE  410 (423)
Q Consensus       389 ~~~~----~g~~~~A~~~~~~m~~~~  410 (423)
                      +|.+    ..+.++|.+.|++--+.|
T Consensus       223 ~y~~G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         223 MQYNGEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             HHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHcCCCCccCHHHHHHHHHHHHHCc
Confidence            6654    336777887777654443

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.11  E-value=2.3e-05  Score=56.31  Aligned_cols=89  Identities=10%  Similarity=0.021  Sum_probs=56.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507          176 IIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM  255 (423)
Q Consensus       176 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~  255 (423)
                      ....+.+.|++++|...|++..+.... +...|..+...+.+.|++++|+..|++..+.. +.+..+|..+...|...|+
T Consensus        22 ~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          22 EGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence            344556666677777666666665433 56666666666666666776766666666653 3345666666666666666


Q ss_pred             hhHHHHHHHHH
Q 014507          256 LDRGEVLLREM  266 (423)
Q Consensus       256 ~~~a~~~~~~m  266 (423)
                      +++|.+.+++.
T Consensus       100 ~~~A~~~l~~~  110 (112)
T d1hxia_         100 ANAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            66666666653

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.06  E-value=2.9e-05  Score=55.82  Aligned_cols=86  Identities=17%  Similarity=0.110  Sum_probs=39.2

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHH
Q 014507          213 VMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSE  292 (423)
Q Consensus       213 ~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  292 (423)
                      ..+.+.|++++|...|++..+.. +-+..+|..+..++.+.|++++|...|++..+.... +...+..+...|...|+.+
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~la~~y~~~g~~~  101 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNAN  101 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccccc-cccchHHHHHHHHHCCCHH
Confidence            33444455555555555544432 223444444444455555555555555444443222 3444444444444444444


Q ss_pred             HHHHHHHH
Q 014507          293 GAQRVFEA  300 (423)
Q Consensus       293 ~a~~~~~~  300 (423)
                      +|.+.+++
T Consensus       102 ~A~~~l~~  109 (112)
T d1hxia_         102 AALASLRA  109 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=1.9e-05  Score=57.67  Aligned_cols=24  Identities=13%  Similarity=0.051  Sum_probs=9.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          315 LLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       315 ~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      .+..+|.+.|++++|.+.|++..+
T Consensus        77 ~Lg~~y~~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          77 YLAVGNYRLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHH
Confidence            333444444444444444444433

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=2.4e-05  Score=57.07  Aligned_cols=94  Identities=18%  Similarity=0.143  Sum_probs=59.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---hhHHHHHHHHHHhCCCCCC-HHHHHHHHHHH
Q 014507          210 VMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM---LDRGEVLLREMDAQEVYVG-SEVYKALLRGY  285 (423)
Q Consensus       210 ~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~  285 (423)
                      .+++.+...+++++|.+.|++....+ +.+..++..+..++.+.++   .++|..+|+++...+..|+ ..++..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            45566666677777777777776654 4466666666666665443   3356777777666554433 23566666777


Q ss_pred             HhCCCHHHHHHHHHHHHHC
Q 014507          286 SMNGNSEGAQRVFEAIQFA  304 (423)
Q Consensus       286 ~~~g~~~~a~~~~~~m~~~  304 (423)
                      .+.|++++|.+.|+++.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            7777777777777777663

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.97  E-value=0.0032  Score=52.15  Aligned_cols=224  Identities=8%  Similarity=-0.041  Sum_probs=138.1

Q ss_pred             hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014507          136 ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGK----KMQIQNAENTLLAMKRRGFICDQVTLTVM  211 (423)
Q Consensus       136 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  211 (423)
                      ..+..|-..+.+.++.++|...++...+.|   +...+..|...|..    ..+...|...+......+   +......+
T Consensus         3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l   76 (265)
T d1ouva_           3 KELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLL   76 (265)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcc
Confidence            344455555556666666666666665554   44445455555554    557777877777777665   33444444


Q ss_pred             HHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHH
Q 014507          212 VVMYSK----AGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVR----AGMLDRGEVLLREMDAQEVYVGSEVYKALLR  283 (423)
Q Consensus       212 i~~~~~----~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  283 (423)
                      ...+..    .++.+.|...++...+.|.   ......+...+..    ......+...+......+   +...+..|..
T Consensus        77 ~~~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~  150 (265)
T d1ouva_          77 GNLYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGS  150 (265)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             ccccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhh
Confidence            444433    4567788888888777652   2333333333332    234555666666655543   4556666766


Q ss_pred             HHHh----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014507          284 GYSM----NGNSEGAQRVFEAIQFAGITPDARMCALLINAYQM----AGQSQKAYTAFQNMRKAGLEPSDKCVALILSAC  355 (423)
Q Consensus       284 ~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  355 (423)
                      .|..    ..+...+...++...+.|   +......+-..|..    ..++++|..+|+...+.|   +...+..|...|
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y  224 (265)
T d1ouva_         151 LYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQ  224 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred             hhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHH
Confidence            6665    456777778887777644   56666666655655    567889999998888876   345555666666


Q ss_pred             HH----cCCHHHHHHHHHHHHHCCCC
Q 014507          356 EK----ENQLNRALEFLIDLERDGFM  377 (423)
Q Consensus       356 ~~----~g~~~~a~~~~~~m~~~g~~  377 (423)
                      .+    ..+.++|.++|++..+.|..
T Consensus       225 ~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         225 YNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            54    33677888888888777643

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=0.0003  Score=54.47  Aligned_cols=60  Identities=7%  Similarity=-0.093  Sum_probs=31.5

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507          243 YGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       243 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  303 (423)
                      |+.+..+|.+.|++++|...++...+.+.. +..++..+..+|...|++++|...|+...+
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~  124 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQ  124 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            444455555555555555555555554322 445555555555555555555555555544

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.82  E-value=0.00063  Score=52.58  Aligned_cols=75  Identities=9%  Similarity=-0.090  Sum_probs=57.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALILSA  354 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~  354 (423)
                      +|+.+..+|.+.|++++|+..++...... +.+...|..+..+|...|++++|...|+...+.  .| |......+-..
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l--~P~n~~~~~~l~~~  139 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcc-ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHH
Confidence            67778888889999999999998888753 337888888889999999999999999988873  45 34444444333

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.81  E-value=0.0076  Score=51.60  Aligned_cols=263  Identities=11%  Similarity=0.045  Sum_probs=120.3

Q ss_pred             HHHHHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCH
Q 014507          107 VKQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQI  186 (423)
Q Consensus       107 ~~~ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  186 (423)
                      |..++..+.+.++++.|.+.+.+.-  +..+|..+..+|.+......+.     +.......++.....++..|-..|.+
T Consensus        43 ~~rl~~~~v~l~~~~~avd~~~k~~--~~~~~k~~~~~l~~~~e~~la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~  115 (336)
T d1b89a_          43 FGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQ-----MCGLHIVVHADELEELINYYQDRGYF  115 (336)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHH-----HTTTTTTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHcC--CHHHHHHHHHHHHhCcHHHHHH-----HHHHHhhcCHHHHHHHHHHHHHcCCh
Confidence            4455555556666666666655432  2335555555665554443321     12222334444455566666666666


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 014507          187 QNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREM  266 (423)
Q Consensus       187 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  266 (423)
                      ++...+++..... -..+...++.++..|++.+ .++..+.++...  + ..|   ..-++..|-+.+-++++.-++.++
T Consensus       116 e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~l~~~s--~-~y~---~~k~~~~c~~~~l~~elv~Ly~~~  187 (336)
T d1b89a_         116 EELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLELFW--S-RVN---IPKVLRAAEQAHLWAELVFLYDKY  187 (336)
T ss_dssp             HHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHHHHHHS--T-TSC---HHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHHHHhcc--c-cCC---HHHHHHHHHHcCChHHHHHHHHhc
Confidence            6666666655432 1235555666666665543 223222222221  1 111   112333444444444443333333


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH
Q 014507          267 DAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDK  346 (423)
Q Consensus       267 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  346 (423)
                      ...        =+++.....+..+..++....+-..+   ..|...|-..+..|... +.+-...++..+...   .|. 
T Consensus       188 ~~~--------~~A~~~~i~~~~~~~~~~~f~e~~~k---~~N~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~---~d~-  251 (336)
T d1b89a_         188 EEY--------DNAIITMMNHPTDAWKEGQFKDIITK---VANVELYYRAIQFYLEF-KPLLLNDLLMVLSPR---LDH-  251 (336)
T ss_dssp             TCH--------HHHHHHHHHSTTTTCCHHHHHHHHHH---CSSTHHHHHHHHHHHHH-CGGGHHHHHHHHGGG---CCH-
T ss_pred             CCH--------HHHHHHHHHcchhhhhHHHHHHHHHc---cCChHHHHHHHHHHHHc-CHHHHHHHHHHhccC---CCH-
Confidence            220        00000111111111111111111222   11333344444444432 233333333333221   121 


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 014507          347 CVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLRE  405 (423)
Q Consensus       347 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  405 (423)
                        ..++.-+.+.+++.....+++.....|   +..+.+++.+.|...++++.-++..++
T Consensus       252 --~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~~  305 (336)
T d1b89a_         252 --TRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSIDA  305 (336)
T ss_dssp             --HHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             --HHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHHH
Confidence              334555566777777777777765555   346888999999999997766655544

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=0.00032  Score=51.40  Aligned_cols=93  Identities=15%  Similarity=0.096  Sum_probs=53.4

Q ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC---CC--CC-HHHHHHHHH
Q 014507          280 ALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAG---LE--PS-DKCVALILS  353 (423)
Q Consensus       280 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~--p~-~~~~~~li~  353 (423)
                      .+-..+.+.|++++|.+.|++..+.+ +.+...|..+..+|.+.|++++|.+.++++.+..   ..  +. ..+|..+..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            34455666666666666666665542 2355666666666666666666666666655411   00  00 234555556


Q ss_pred             HHHHcCCHHHHHHHHHHHHH
Q 014507          354 ACEKENQLNRALEFLIDLER  373 (423)
Q Consensus       354 ~~~~~g~~~~a~~~~~~m~~  373 (423)
                      .+...+++++|.+.+++...
T Consensus        88 ~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            66666666666666666554

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.00039  Score=50.93  Aligned_cols=91  Identities=12%  Similarity=0.112  Sum_probs=41.6

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CC-----HHHHHHHHHH
Q 014507          211 MVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVY-VG-----SEVYKALLRG  284 (423)
Q Consensus       211 li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~-----~~~~~~li~~  284 (423)
                      +...+.+.|++++|+..|.+..+.+ +.+...|..+..+|.+.|++++|...++++.+.... +.     ..+|..+...
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            4444455555555555555555443 224445555555555555555555555554432110 00     1234444444


Q ss_pred             HHhCCCHHHHHHHHHHHH
Q 014507          285 YSMNGNSEGAQRVFEAIQ  302 (423)
Q Consensus       285 ~~~~g~~~~a~~~~~~m~  302 (423)
                      +...+++++|.+.|+...
T Consensus        89 ~~~~~~~~~A~~~~~kal  106 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSL  106 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHH
Confidence            444455555555554433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.78  E-value=0.00073  Score=51.14  Aligned_cols=61  Identities=13%  Similarity=-0.020  Sum_probs=33.4

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      +|+.+..+|.+.|++++|++.++...+.. +.+..+|..+..++...|++++|...|+...+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            44455555555555555555555555432 22455555555555555555555555555554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.74  E-value=0.0012  Score=49.99  Aligned_cols=61  Identities=8%  Similarity=-0.089  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507          242 SYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       242 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  303 (423)
                      +|..+..+|.+.|++++|+..+++..+.+.. +..+|..+..++...|++++|...|+...+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~  129 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAAS  129 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHH
Confidence            4444555555555555555555555544322 445555555555555555555555555554

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.74  E-value=0.00045  Score=53.89  Aligned_cols=70  Identities=19%  Similarity=0.304  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK-----AGLEPSDKC  347 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~  347 (423)
                      .+..+...+.+.|++++|...++.+.... +-+...|..++.+|...|+.++|++.|+++.+     .|+.|...+
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            55666677777777777777777766542 23666777777777777777777777776533     466676554

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.65  E-value=0.014  Score=49.92  Aligned_cols=129  Identities=9%  Similarity=0.053  Sum_probs=58.0

Q ss_pred             HHHHhccCCCCCHHHHHHHHHHhcCCChhhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCHHHHHHHHHHHHccCCHH
Q 014507          108 KQIICVSPETGNLSDLLAAWVRFMKPRRADWLAVLKQLKLMEHPLYLQVAELALLEESFEANIRDYTKIIHGYGKKMQIQ  187 (423)
Q Consensus       108 ~~ll~~~~~~g~~~~a~~~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  187 (423)
                      ..+.+.|-+.|.++.|..+|..     ..-|..++..+.+.++++.|.......      -+..+|..+...+.+.....
T Consensus        18 ~~i~~~c~~~~lye~A~~lY~~-----~~d~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~~l~~~~e~~   86 (336)
T d1b89a_          18 QQVGDRCYDEKMYDAAKLLYNN-----VSNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFR   86 (336)
T ss_dssp             -----------CTTTHHHHHHH-----TTCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHh-----CCCHHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHHHHHhCcHHH
Confidence            3344555566666666666653     233455555555555555554433211      23445555555555554443


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014507          188 NAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRA  253 (423)
Q Consensus       188 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~  253 (423)
                      .|.     +...+...+......++..|-..|.+++...++...... -..+...++.++..|++.
T Consensus        87 la~-----i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~  146 (336)
T d1b89a_          87 LAQ-----MCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF  146 (336)
T ss_dssp             HHH-----HTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTT
T ss_pred             HHH-----HHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHh
Confidence            321     112222234444455566666666666666666554432 133455555566655554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.65  E-value=0.00086  Score=51.68  Aligned_cols=80  Identities=10%  Similarity=-0.047  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014507          240 KRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINA  319 (423)
Q Consensus       240 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  319 (423)
                      ...|..+..++.+.|++++|+..+.+..+.... +..+|..+..++.+.|++++|.+.|+...+.. +.+......+..+
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~  154 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKV  154 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            344555666666666666666666666665433 55666666666666777777776666666542 1244444444444


Q ss_pred             HH
Q 014507          320 YQ  321 (423)
Q Consensus       320 ~~  321 (423)
                      ..
T Consensus       155 ~~  156 (169)
T d1ihga1         155 KQ  156 (169)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.64  E-value=0.0007  Score=52.21  Aligned_cols=82  Identities=10%  Similarity=0.004  Sum_probs=62.9

Q ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHH
Q 014507          274 GSEVYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEP-SDKCVALIL  352 (423)
Q Consensus       274 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li  352 (423)
                      ....|..+..++.+.|++++|+..++...+.. +.+...|..+..+|...|++++|.+.|+...+.  .| +......+.
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l--~p~n~~~~~~l~  152 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI--APEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            34567778888999999999999999988753 347788999999999999999999999998884  44 455555555


Q ss_pred             HHHHHc
Q 014507          353 SACEKE  358 (423)
Q Consensus       353 ~~~~~~  358 (423)
                      ....+.
T Consensus       153 ~~~~~l  158 (169)
T d1ihga1         153 KVKQKI  158 (169)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444433

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.62  E-value=0.00075  Score=52.57  Aligned_cols=70  Identities=14%  Similarity=0.266  Sum_probs=40.8

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-----CCCCCCHHH
Q 014507          242 SYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF-----AGITPDARM  312 (423)
Q Consensus       242 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~  312 (423)
                      .+..+..++.+.|++++|...++++.+.... +...|..++.+|.+.|+.++|++.|+.+..     .|+.|...+
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            4555566666666666666666666654433 555666666666666666666666665432     356665544

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.51  E-value=0.0075  Score=46.06  Aligned_cols=81  Identities=14%  Similarity=-0.046  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHH
Q 014507          312 MCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFK  391 (423)
Q Consensus       312 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~  391 (423)
                      .|+.+..+|.+.|++++|+..++...+.. +.+...|..+..++...|++++|...|+++.+.. +.+......+-.+..
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQK  143 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            45556677777778888877777777642 3356677777777777888888888887777642 234444444444443


Q ss_pred             HcC
Q 014507          392 RLG  394 (423)
Q Consensus       392 ~~g  394 (423)
                      +.+
T Consensus       144 ~~~  146 (168)
T d1kt1a1         144 KAK  146 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.51  E-value=0.0017  Score=49.87  Aligned_cols=61  Identities=10%  Similarity=-0.014  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          277 VYKALLRGYSMNGNSEGAQRVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       277 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      +|+.+..+|.+.|++++|+..++...... +.+..+|..+..++...|++++|.+.|+...+
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~  126 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLE  126 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44455555566666666666666555432 23555566666666666666666666666655

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=5.3e-05  Score=70.12  Aligned_cols=112  Identities=11%  Similarity=-0.050  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014507          170 IRDYTKIIHGYGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMA  249 (423)
Q Consensus       170 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~  249 (423)
                      ...+..+...+.+.|+.+.|...+.......   ...++..+...+...|++++|...|++..+.. +-+..+|+.|...
T Consensus       120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~  195 (497)
T d1ya0a1         120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAIL  195 (497)
T ss_dssp             -----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHH
T ss_pred             HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHH
Confidence            3444445555555555555555554443321   12344445555555566666666665555542 2233555555555


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 014507          250 YVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYS  286 (423)
Q Consensus       250 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  286 (423)
                      +...|+..+|...|.+...... |-..++..|...+.
T Consensus       196 ~~~~~~~~~A~~~y~ral~~~~-~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         196 ASSKGDHLTTIFYYCRSIAVKF-PFPAASTNLQKALS  231 (497)
T ss_dssp             HHHTTCHHHHHHHHHHHHSSSB-CCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHH
Confidence            5556666666655555555432 34455555544443

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.0002  Score=66.06  Aligned_cols=224  Identities=8%  Similarity=-0.066  Sum_probs=117.9

Q ss_pred             HHHHHHHHh--cCCCh-hhHHHHHHHHHhcCCchHHHHHHHHHhhcccCCCH-HHHHHHHHHHHccCCHHHHHHHHHHHH
Q 014507          122 DLLAAWVRF--MKPRR-ADWLAVLKQLKLMEHPLYLQVAELALLEESFEANI-RDYTKIIHGYGKKMQIQNAENTLLAMK  197 (423)
Q Consensus       122 ~a~~~~~~~--~~p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~  197 (423)
                      +|.+.|++.  ++||. .++..+-.++...++++++   ++.++...  |+. ..++. ...+.+ ..+..+.+.++...
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~d--p~~a~~~~~-e~~Lw~-~~y~~~ie~~r~~~   76 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTD--LEYALDKKV-EQDLWN-HAFKNQITTLQGQA   76 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHC--HHHHHHHTH-HHHHHH-HHTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcC--hhhHHHHhH-HHHHHH-HHHHHHHHHHHHhc
Confidence            577777776  45664 4555555566666666554   33333322  111 11111 111111 12445666666666


Q ss_pred             HcCCCCCHHHHHHHHHHH--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 014507          198 RRGFICDQVTLTVMVVMY--SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGS  275 (423)
Q Consensus       198 ~~g~~p~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~  275 (423)
                      +....++..-....+..+  ...+.++.|+..+.+..+.. .++...+..+...+.+.|+.+.|...+.......   ..
T Consensus        77 k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~  152 (497)
T d1ya0a1          77 KNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQ  152 (497)
T ss_dssp             SCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HH
T ss_pred             ccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HH
Confidence            543333332222222222  22344555554444433322 3345677788888889999999988877665432   13


Q ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014507          276 EVYKALLRGYSMNGNSEGAQRVFEAIQFAGITP-DARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSA  354 (423)
Q Consensus       276 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  354 (423)
                      .++..+...+...|++++|...|++..+.  .| +...|+.+...+...|+..+|...|.+..... .|-..++..|...
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~  229 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHH
Confidence            57778889999999999999999998875  45 66899999999999999999999999988754 5667888888877


Q ss_pred             HHHcC
Q 014507          355 CEKEN  359 (423)
Q Consensus       355 ~~~~g  359 (423)
                      +.+..
T Consensus       230 ~~~~~  234 (497)
T d1ya0a1         230 LSKAL  234 (497)
T ss_dssp             HHHHT
T ss_pred             HHHhh
Confidence            76543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.37  E-value=0.00027  Score=59.03  Aligned_cols=54  Identities=17%  Similarity=0.140  Sum_probs=38.0

Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          180 YGKKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       180 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      ..+.|++++|+..+++..+..+. |...+..+...++..|++++|.+.|+...+.
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            34567777777777777776433 6677777777777777777777777777665

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.31  E-value=0.00021  Score=59.69  Aligned_cols=121  Identities=12%  Similarity=-0.000  Sum_probs=63.1

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHH
Q 014507          216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQ  295 (423)
Q Consensus       216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  295 (423)
                      .+.|++++|+..+++..+.. +-|...+..+...++..|++++|.+.++...+.... +...+..+...+...+..+++.
T Consensus         7 L~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~-~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE-YLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHhccccHHHH
Confidence            35677777777777777664 446677777777777777777777777777664322 2333333333332222222211


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          296 RVFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       296 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      .-.......+-.++...+......+...|+.++|.+++++..+
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e  127 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE  127 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence            1110000001111223333344555666777777777766654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.27  E-value=0.001  Score=49.77  Aligned_cols=71  Identities=15%  Similarity=0.115  Sum_probs=40.8

Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014507          182 KKMQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKA----------GNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYV  251 (423)
Q Consensus       182 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~  251 (423)
                      +.+.+++|...|+...+..+. +...+..+..++...          +.+++|+..|++..+.. +-+..+|..+..+|.
T Consensus         9 r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y~   86 (145)
T d1zu2a1           9 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   86 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHHH
Confidence            445567777777777666433 566666666665533          33456666666666543 334556666666655


Q ss_pred             HcC
Q 014507          252 RAG  254 (423)
Q Consensus       252 ~~~  254 (423)
                      ..|
T Consensus        87 ~~g   89 (145)
T d1zu2a1          87 SFA   89 (145)
T ss_dssp             HHH
T ss_pred             Hcc
Confidence            443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.20  E-value=0.0011  Score=49.57  Aligned_cols=39  Identities=10%  Similarity=0.020  Sum_probs=21.4

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014507          216 SKAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGM  255 (423)
Q Consensus       216 ~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~  255 (423)
                      -+.+.+++|...|+...+.. +.+..++..+..++...++
T Consensus         8 ~r~~~fe~A~~~~e~al~~~-P~~~~~~~~~g~~l~~~~~   46 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQ   46 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhC-CcchHHHHHHHHHHHHhhh
Confidence            34455666666666666553 3355556656555554433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.99  E-value=0.0076  Score=45.35  Aligned_cols=95  Identities=16%  Similarity=0.071  Sum_probs=59.8

Q ss_pred             HHHHH--HHHHHHcCCHHHHHHHHHHHHH--CCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---
Q 014507          312 MCALL--INAYQMAGQSQKAYTAFQNMRK--AGLEPS----------DKCVALILSACEKENQLNRALEFLIDLERD---  374 (423)
Q Consensus       312 ~~~~l--i~~~~~~g~~~~a~~~~~~m~~--~~~~p~----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---  374 (423)
                      +|..+  ...+...|++++|+..|++..+  ... |+          ..+|+.+..+|...|++++|...+++..+.   
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~-~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTM-PPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTS-CTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhh-hhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            44444  3344556777777777776654  111 11          346677777777777777777777766532   


Q ss_pred             --CCCcC-----HHHHHHHHHHHHHcCCHHHHHHHHHHhc
Q 014507          375 --GFMVG-----KEASCTLAAWFKRLGVVEEVEHVLREYG  407 (423)
Q Consensus       375 --g~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~m~  407 (423)
                        ...++     ...+..+..+|.+.|++++|.+.|++..
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al  127 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  127 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence              11111     2346677888889999999988888754

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.93  E-value=0.012  Score=44.16  Aligned_cols=55  Identities=4%  Similarity=-0.143  Sum_probs=28.9

Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCC-CC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 014507          178 HGYGKKMQIQNAENTLLAMKRRGFI-CD----------QVTLTVMVVMYSKAGNLKMAEETFEEIK  232 (423)
Q Consensus       178 ~~~~~~~~~~~a~~~~~~m~~~g~~-p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~  232 (423)
                      ..+...|++++|+..|++..+.... |+          ...|+.+..+|.+.|++++|...+++..
T Consensus        17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1          17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            3444556666666666666542110 11          2345555556666666666655555544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.025  Score=38.21  Aligned_cols=27  Identities=19%  Similarity=0.251  Sum_probs=12.1

Q ss_pred             HHHHHHHHHHHcCChhHHHHHHHHHHh
Q 014507          242 SYGSMVMAYVRAGMLDRGEVLLREMDA  268 (423)
Q Consensus       242 ~~~~li~~~~~~~~~~~a~~~~~~m~~  268 (423)
                      ++..|..++.+.|++++|...++++.+
T Consensus        48 ~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_          48 VLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            344444444444444444444444444

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.26  E-value=0.021  Score=38.56  Aligned_cols=77  Identities=16%  Similarity=0.080  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHHHccCCHHHHHHHHHHHHHcC-----CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 014507          169 NIRDYTKIIHGYGKKMQIQNAENTLLAMKRRG-----FICD-QVTLTVMVVMYSKAGNLKMAEETFEEIKLLGEPLDKRS  242 (423)
Q Consensus       169 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~  242 (423)
                      +...+-.+...+.+.|++++|...|++..+..     ..++ ..+++.+..++.+.|++++|...+++..+.. +-+..+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a   82 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA   82 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence            34455567888889999999999888876541     1122 4678889999999999999999999988864 223455


Q ss_pred             HHHH
Q 014507          243 YGSM  246 (423)
Q Consensus       243 ~~~l  246 (423)
                      ++.+
T Consensus        83 ~~Nl   86 (95)
T d1tjca_          83 NGNL   86 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.06  E-value=0.14  Score=36.79  Aligned_cols=48  Identities=15%  Similarity=0.173  Sum_probs=21.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 014507          290 NSEGAQRVFEAIQFAGITPDARMCALLINAYQM----AGQSQKAYTAFQNMRKAG  340 (423)
Q Consensus       290 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~  340 (423)
                      +.++|.++|+...+.|   +......|-..|..    ..+.++|.++|+...+.|
T Consensus        74 d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          74 DLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            4445555555544433   22333333333332    234555555555555444

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.90  E-value=0.17  Score=36.20  Aligned_cols=81  Identities=11%  Similarity=0.036  Sum_probs=38.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCH
Q 014507          290 NSEGAQRVFEAIQFAGITPDARMCALLINAYQM----AGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEK----ENQL  361 (423)
Q Consensus       290 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~  361 (423)
                      +.++|.+.+++..+.|   +......+-..|..    ..+.++|.++|++..+.|   ++.....|...|..    ..+.
T Consensus        38 ~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~  111 (133)
T d1klxa_          38 NKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNE  111 (133)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCH
Confidence            4445555555544433   23333333333332    234566666666665554   22233334444433    2355


Q ss_pred             HHHHHHHHHHHHCCC
Q 014507          362 NRALEFLIDLERDGF  376 (423)
Q Consensus       362 ~~a~~~~~~m~~~g~  376 (423)
                      ++|.+++++..+.|.
T Consensus       112 ~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         112 KQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCC
Confidence            666666666655553

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.58  E-value=0.21  Score=34.91  Aligned_cols=139  Identities=13%  Similarity=0.046  Sum_probs=77.2

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHH
Q 014507          217 KAGNLKMAEETFEEIKLLGEPLDKRSYGSMVMAYVRAGMLDRGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQR  296 (423)
Q Consensus       217 ~~g~~~~A~~~~~~m~~~g~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  296 (423)
                      -.|..++..++..+....   .+..-||-+|.-....-+-+...++++..-+.   .|.          ..+++......
T Consensus        14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~vv~   77 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVE   77 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHH
T ss_pred             HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHHHH
Confidence            345566666666655543   24444555555555555555555555444331   110          12223332222


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC
Q 014507          297 VFEAIQFAGITPDARMCALLINAYQMAGQSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGF  376 (423)
Q Consensus       297 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~  376 (423)
                      .+-.+-     .+...++..++.+..+|.-+.-.++++++.+.+ +|++.....+..+|.+.|...++.+++.+.-+.|+
T Consensus        78 C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          78 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            222211     244555666777777777777777777766643 66667777777777777777777777777777765


Q ss_pred             C
Q 014507          377 M  377 (423)
Q Consensus       377 ~  377 (423)
                      +
T Consensus       152 K  152 (161)
T d1wy6a1         152 K  152 (161)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=92.78  E-value=1  Score=31.42  Aligned_cols=67  Identities=13%  Similarity=0.111  Sum_probs=56.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHHHHHHcCCHHHHHHHHHHhcccCC
Q 014507          344 SDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAAWFKRLGVVEEVEHVLREYGLRET  411 (423)
Q Consensus       344 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~~~  411 (423)
                      +...+...+.....+|+-++..++.+.+.+. -.|+++..-.+..+|.+.|...++.+++++--++|+
T Consensus        85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          85 LNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            3456677888899999999999999997775 468889999999999999999999999999888775

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.44  E-value=1.1  Score=29.56  Aligned_cols=63  Identities=17%  Similarity=0.176  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCcCHHHHHHHHH
Q 014507          325 QSQKAYTAFQNMRKAGLEPSDKCVALILSACEKENQLNRALEFLIDLERDGFMVGKEASCTLAA  388 (423)
Q Consensus       325 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~~~~~~~~~l~~  388 (423)
                      +.-++.+-++.+....+.|++......+++|.+.+++..|.++++-.+.+ ..++...|..++.
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yilq   83 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   83 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHHH
Confidence            34456666666666778888888888888888888888888888877654 2234556665553

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.31  E-value=1.8  Score=30.06  Aligned_cols=68  Identities=15%  Similarity=0.070  Sum_probs=40.8

Q ss_pred             CCCHHHHHHHHHHHHcc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 014507          167 EANIRDYTKIIHGYGKK---MQIQNAENTLLAMKRRGFICDQVTLTVMVVMYSKAGNLKMAEETFEEIKLL  234 (423)
Q Consensus       167 ~~~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  234 (423)
                      .+++.+--...-+++++   .++++++.+++++.+.+..-....+-.|.-+|.+.|++++|.+.++.+.+.
T Consensus        32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i  102 (124)
T d2pqrb1          32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  102 (124)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            34444433334444433   455677778877776532211245555677777888888888888887775

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.72  E-value=2.5  Score=27.75  Aligned_cols=46  Identities=13%  Similarity=0.125  Sum_probs=26.9

Q ss_pred             HHHHHHHHHHhCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Q 014507          258 RGEVLLREMDAQEVYVGSEVYKALLRGYSMNGNSEGAQRVFEAIQF  303 (423)
Q Consensus       258 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  303 (423)
                      ++.+-+..+...+..|++.+..+.+.+|.+.+++..|.++++..+.
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3444445555555566666666666666666666666666665554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.82  E-value=3.5  Score=28.51  Aligned_cols=65  Identities=8%  Similarity=-0.028  Sum_probs=34.1

Q ss_pred             CCHHHHHHHHHHHHhCCC---HHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 014507          273 VGSEVYKALLRGYSMNGN---SEGAQRVFEAIQFAGITPD-ARMCALLINAYQMAGQSQKAYTAFQNMRK  338 (423)
Q Consensus       273 p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  338 (423)
                      |+..+-.....++.+..+   .+++..+++++.+.+ +.+ ...+..+.-+|.+.|++++|.+.++.+.+
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            444444444445554433   345666666655432 112 23444555566666666666666666665