Citrus Sinensis ID: 014571

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420--
Protein Sequence
MDLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLVLTALIESFLMLPVLLLD
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHcHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccEEEEcccccccccccccccccccEEEEEHHHHHHHHHccccccccEEccccccccccEEEEEEccccccccccccccccHHHHHccccccccEEccccEEEEEccccccHHHHccccccEEEEEcccccccccccccccccEEEccccHHHHHHHcccccccEEEEccccccHHHHHHHHHcccccEEEEEccccHHHHHHHHHHHHccccEEEEEEccHHHHHHHHccccccccccccccEEEEccccccccEEEccHHHHHHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHcccEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEcccHHHHHHHHHHccHHHHHHHHHHHcccccEEEEEEEcccccHHHHHHHHHHHHHHHcccccHccHHHHHHccccccccccccccccEEEEEccccccccccccccccccEEEEEHHHHHHHHccccEEcccEEEcccccccccEEEEEEEcccccHHHHHHHccccccEEEccccccccccHHHHEHcccccccccccccccccEEEEEEcccccccccHHHHHcccEEEccccccHHHHHcccccccEEEEEccccccHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHcccEEEEEEcccccccccccccHcHEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHEcc
Coil and Loop (DISEMBL)
mdlsgrysyspllrwnpqVEEYFIRAYgadhfsriskaltrpscyscirvntlkttTDDVIQKLLAIIQNsgsseadvASSVKgrlqngtisesqipglEYVVFVkgsgphtidygyepdkppkevivsRKCAEAVLRGAQVYVPGvmacsshvekgDVVAVSVAVeqptldggwglgitrgtvlqgsqtdpyyfersglyigqgtamMSRAGIfrasegiavdmhnrifqlpsfydvlegeiflqnlpsivtahaldpqkgerildmcaapggkTTAIASLLRDegevvavdrshnkVMDIQKLAAEMGLKCITTYKLDALKAVRRknesndepnmcnskdnnyitsqtsdsmklhkevpsiaaeglngdksckekgrtcgecgMAQEEINALVVGLRIQKVLVLTALIESFLMLPVLLLD
Flexible Loop (DISEMBL)
mdlsgrysyspllrwnPQVEEYFIRAYGADHFSriskaltrpscYSCIRVNTLKTTTDDVIQKLLAIIqnsgsseadvASSVKGRLQngtisesqipgLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQptldggwglgitRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEvvavdrshnkVMDIQKLAAEMGLKCITTYKLDALKAVRrknesndepnmcnskdnnYITSQTSDSMKLHKEVPSIaaeglngdkscKEKGRTCGECGMAQEEINALVVGLRIQKVLVLTALIEsflmlpvllld
Low Complexity Region (SEG)
MDLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLVLTALIESFLMLPVLLLD
Disordered region (IsUnstruct)
******YSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQ*************************QIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA*******************************************************TCGECGMAQEEINALVVGLRIQKVLVLTALIESFLMLPVLLL*
Disordered Region (DISOPRED)
*****RY*YSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADV**********GTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLVLTALIESFLMLPVLLL*
Disordered Region (DISEMBL)
MDLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQN**************RLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLVLTALIESFLMLPVLLLD
Disordered Region (DISPRO)
*****RYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLVLTALIESFLMLPVLLLD
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLVLTALIESFLMLPVLLLD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	422	2.2.26 [Sep-21-2011]
Q7TS68	476	Putative methyltransferas	yes	no	0.661	0.586	0.331	1e-40
Q8TEA1	469	Putative methyltransferas	yes	no	0.668	0.601	0.322	4e-39
P94464	447	Ribosomal RNA small subun	yes	no	0.199	0.187	0.428	6e-12
P72943	446	Ribosomal RNA small subun	N/A	no	0.210	0.199	0.391	1e-09
Q96P11	429	Putative methyltransferas	no	no	0.303	0.298	0.279	2e-09
Q8K4F6	465	Putative methyltransferas	no	no	0.194	0.176	0.353	1e-08
Q60343	274	tRNA (cytosine(48)-C(5))-	yes	no	0.213	0.328	0.344	5e-08
P40991	618	Putative ribosomal RNA me	yes	no	0.182	0.124	0.395	7e-08
Q922K7	793	Putative ribosomal RNA me	no	no	0.156	0.083	0.424	8e-08
P46087	812	Putative ribosomal RNA me	no	no	0.156	0.081	0.409	2e-07

>sp|Q7TS68|NSUN6_MOUSE Putative methyltransferase NSUN6 OS=Mus musculus GN=Nsun6 PE=2 SV=2

 Score =  167 bits (424), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 110/332 (33%), Positives = 166/332 (50%), Gaps = 53/332 (15%)

Query: 11  PLLRWNPQVEEYFIRAY-------------GADHFSRISKALTRPSCYSCIRVNTLKTTT 57
           P +   P+VE Y   ++                 F  +   L+ P   + +RVNT   + 
Sbjct: 5   PKISLRPEVENYLKESFLNEEAVSASSRQEAERKFETLLLRLSHPPSMTTVRVNTHLGSV 64

Query: 58  DDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGY 117
             V   LL  +Q               +    +I   Q P L  V+ +  +GP       
Sbjct: 65  QHVRGLLLEELQK--------------QFGESSIPVVQHPALPDVLLIPMTGPRK----- 105

Query: 118 EPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGL 177
             ++   EVIV  +C  AVLRGA VYVPG+++ S  ++ GDV++V   +           
Sbjct: 106 NIERQQGEVIVGAQCGNAVLRGAHVYVPGIVSASKFMKAGDVISVYSDI----------- 154

Query: 178 GITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPS 234
               G   +G++     F+ + +++G G + +SR  IF      +GI + M   I+  PS
Sbjct: 155 ---NGKCKKGAKE----FDGTKVFLGNGISELSRKDIFNGLPDLKGIGIRMTEPIYLSPS 207

Query: 235 FYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR 294
           F +VL   IFLQNLPS V AH LDPQ GE+ILDMCAAPGGKTT  A+L++D+GEV+A+D+
Sbjct: 208 FDNVLPSYIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGEVIALDK 267

Query: 295 SHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
              KV  +++ A+ +GL  I  +  DA KA++
Sbjct: 268 ILTKVNKLKQNASLLGLHSIRAFCFDATKALK 299

May have S-adenosyl-L-methionine-dependent methyl-transferase activity.
Mus musculus (taxid: 10090)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q8TEA1|NSUN6_HUMAN Putative methyltransferase NSUN6 OS=Homo sapiens GN=NSUN6 PE=1 SV=1

 Score =  162 bits (411), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/335 (32%), Positives = 166/335 (49%), Gaps = 53/335 (15%)

Query: 8   SYSPLLRWNPQVEEYF---------IRAYGADH----FSRISKALTRPSCYSCIRVNTLK 54
           S  P +   P+VE Y          + A G       F  + K L+ P  ++ +RVNT  
Sbjct: 2   SIFPKISLRPEVENYLKEGFMNKEIVTALGKQEAERKFETLLKHLSHPPSFTTVRVNTHL 61

Query: 55  TTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTID 114
            +   V   LL  +Q               +    ++   Q P L+ V+ +   GP    
Sbjct: 62  ASVQHVKNLLLDELQK--------------QFNGLSVPILQHPDLQDVLLIPVIGPRK-- 105

Query: 115 YGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGG 174
                 K   E IV  +C  AVLRGA VY PG+++ S  ++ GDV++V   +        
Sbjct: 106 ---NIKKQQCEAIVGAQCGNAVLRGAHVYAPGIVSASQFMKAGDVISVYSDI-------- 154

Query: 175 WGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQ 231
                 +G   +G++     F+ + +++G G + +SR  IF      +G+ + M   ++ 
Sbjct: 155 ------KGKCKKGAKE----FDGTKVFLGNGISELSRKEIFSGLPELKGMGIRMTEPVYL 204

Query: 232 LPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
            PSF  VL   +FLQNLPS + +H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A
Sbjct: 205 SPSFDSVLPRYLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIA 264

Query: 292 VDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR 326
           +D+  NKV  I++ A  +GL  I  +  D  KAV+
Sbjct: 265 LDKIFNKVEKIKQNALLLGLNSIRAFCFDGTKAVK 299

May have S-adenosyl-L-methionine-dependent methyl-transferase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P94464|RSMB_BACSU Ribosomal RNA small subunit methyltransferase B OS=Bacillus subtilis (strain 168) GN=rsmB PE=3 SV=2

 Score = 72.4 bits (176), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/84 (42%), Positives = 55/84 (65%)

Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
           GE+ +Q+  S++ A ALDP+  E +LD CAAPGGK+  IA L++++G V ++D   +KV 
Sbjct: 231 GEVSIQDESSMLVARALDPKSDETVLDACAAPGGKSAHIAELMKNKGSVTSLDLHKHKVK 290

Query: 301 DIQKLAAEMGLKCITTYKLDALKA 324
            I++ A  +GL  I    +DA KA
Sbjct: 291 LIKEAADRLGLTIIHAETMDARKA 314

Bacillus subtilis (strain 168) (taxid: 224308)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P72943|RSMB_SYNY3 Ribosomal RNA small subunit methyltransferase B OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rsmB PE=3 SV=1

 Score = 64.7 bits (156), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/92 (39%), Positives = 51/92 (55%), Gaps = 3/92 (3%)

Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
           I QLP F    EG   +Q+  +   A  L+PQ  E I D+CAAPGGKTT IA L+ D+G+
Sbjct: 223 ITQLPGFA---EGWWTVQDASAQWVAQILNPQPEETIFDVCAAPGGKTTHIAELMGDQGQ 279

Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD 320
           + A DR   ++  +      +GL  I  ++ D
Sbjct: 280 IYAGDRHGWRLQKLAVTQQRLGLTSIKIWEGD 311

Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q96P11|NSUN5_HUMAN Putative methyltransferase NSUN5 OS=Homo sapiens GN=NSUN5 PE=1 SV=2

 Score = 63.9 bits (154), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)

Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE------GEIFLQ 246
           YF+R G  Y G+ +++     + +    +   +   +   P+  D+ E      G + LQ
Sbjct: 153 YFKRQGFSYQGRASSLDDLRAL-KGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 211

Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
           +  S + A  LDP  G  ++D CAAPG KT+ +A+LL+++G++ A D    ++  +  L 
Sbjct: 212 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 271

Query: 307 AEMGLKCITTYKLDAL 322
           A  G+ C    + D L
Sbjct: 272 ARAGVSCCELAEEDFL 287

May have S-adenosyl-L-methionine-dependent methyl-transferase activity.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8K4F6|NSUN5_MOUSE Putative methyltransferase NSUN5 OS=Mus musculus GN=Nsun5 PE=2 SV=2

 Score = 61.2 bits (147), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/82 (35%), Positives = 47/82 (57%)

Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
           G + LQ+  S + A  L P  G  ++D CAAPG KT+ IA+LL+++G++ A D+   ++ 
Sbjct: 206 GHLILQDKASCLPAMLLSPPPGSHVIDACAAPGNKTSYIAALLKNQGKIFAFDQDAKRLA 265

Query: 301 DIQKLAAEMGLKCITTYKLDAL 322
            +  L A  G+ C    + D L
Sbjct: 266 AMATLVARAGVSCCELAEKDFL 287

May have S-adenosyl-L-methionine-dependent methyl-transferase activity.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q60343|TRM4_METJA tRNA (cytosine(48)-C(5))-methyltransferase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=trm4 PE=1 SV=1

 Score = 59.7 bits (143), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%)

Query: 222 AVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAS 281
           A ++    F + S  + L G    Q++ S++    L+P++ + ILDMCAAPGGKTT +A 
Sbjct: 44  AFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQ 103

Query: 282 LLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
           L++++G +VAV+ S  +   ++     MG+
Sbjct: 104 LMKNKGTIVAVEISKTRTKALKSNINRMGV 133

Catalyzes AdoMet-dependent formation of m5C in tRNA. Cytidine residue at either position 40 or position 48 is likely to be methylated.

Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) (taxid: 243232)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P40991|NOP2_YEAST Putative ribosomal RNA methyltransferase Nop2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=NOP2 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD--- 293
           + L G   LQ   S +   ALDP + ERILDM AAPGGKTT I++++++ G V A D   
Sbjct: 321 EYLAGHYILQAASSFLPVIALDPHENERILDMAAAPGGKTTYISAMMKNTGCVFANDANK 380

Query: 294 -RSHNKVMDIQKLAAEMGLKC 313
            R+ + + +I +L     + C
Sbjct: 381 SRTKSLIANIHRLGCTNTIVC 401

Required for 60S ribosomal subunit synthesis. May act as ribosomal RNA methyltransferase.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q922K7|NOP2_MOUSE Putative ribosomal RNA methyltransferase NOP2 OS=Mus musculus GN=Nop2 PE=2 SV=1

 Score = 58.5 bits (140), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 43/66 (65%)

Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
           + L G   LQ   S++   AL PQ+ ERILDMC APGGKT+ IA L+++ G ++A D + 
Sbjct: 345 EYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYIAQLMKNTGVILANDANA 404

Query: 297 NKVMDI 302
           +++  +
Sbjct: 405 DRLKSV 410

May play a role in the regulation of the cell cycle and the increased nucleolar activity that is associated with the cell proliferation. May act as ribosomal RNA methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|P46087|NOP2_HUMAN Putative ribosomal RNA methyltransferase NOP2 OS=Homo sapiens GN=NOP2 PE=1 SV=2

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 42/66 (63%)

Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
           + L G   LQ   S++   AL PQ+ ERILDMC APGGKT+ +A L+++ G ++A D + 
Sbjct: 360 EYLAGHYMLQGASSMLPVMALAPQEHERILDMCCAPGGKTSYMAQLMKNTGVILANDANA 419

Query: 297 NKVMDI 302
            ++  +
Sbjct: 420 ERLKSV 425

May play a role in the regulation of the cell cycle and the increased nucleolar activity that is associated with the cell proliferation. May act as ribosomal RNA methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
359485187	590	PREDICTED: putative methyltransferase NS	0.886	0.633	0.742	1e-162
302143528	561	unnamed protein product [Vitis vinifera]	0.876	0.659	0.742	1e-161
449453870	556	PREDICTED: putative methyltransferase NS	0.872	0.661	0.715	1e-151
449504229	559	PREDICTED: LOW QUALITY PROTEIN: putative	0.879	0.663	0.715	1e-151
255574263	586	RNA binding protein, putative [Ricinus c	0.862	0.621	0.674	1e-149
356553761	571	PREDICTED: putative methyltransferase NS	0.841	0.621	0.674	1e-139
297843456	599	predicted protein [Arabidopsis lyrata su	0.902	0.636	0.626	1e-136
42561755	599	NOL1/NOP2/sun-like protein [Arabidopsis	0.876	0.617	0.612	1e-131
357494215	572	Ribosomal RNA small subunit methyltransf	0.829	0.611	0.636	1e-131
226495531	585	hypothetical protein [Zea mays] gi|21988	0.772	0.557	0.675	1e-126

>gi|359485187|ref|XP_002279096.2| PREDICTED: putative methyltransferase NSUN6-like [Vitis vinifera]

 Score =  576 bits (1485), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 279/376 (74%), Positives = 316/376 (84%), Gaps = 2/376 (0%)

Query: 1   MDLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDV 60
           MD S RY Y+P+LRWNPQVE YF +AYG  HFSRI++AL RPSCYSCIRVNTLK+T+D V
Sbjct: 26  MDPSDRYCYNPVLRWNPQVEAYFSKAYGPHHFSRITQALARPSCYSCIRVNTLKSTSDAV 85

Query: 61  IQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPD 120
           I+KLLAIIQ +     +   S K  L+ G+IS+ Q+PGL+YVVFV+GSGPHTI+YGYE D
Sbjct: 86  IEKLLAIIQET--ELGNTLDSQKKSLETGSISKCQLPGLDYVVFVRGSGPHTIEYGYEID 143

Query: 121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGIT 180
           +PPKEVIVSRKCAEAVLRGAQVYVPGV+ACSSHVEKGDVVAVSVAVEQP  DGGWG+GIT
Sbjct: 144 RPPKEVIVSRKCAEAVLRGAQVYVPGVLACSSHVEKGDVVAVSVAVEQPGTDGGWGVGIT 203

Query: 181 RGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE 240
           RGTVLQG QTDPY+FER+ LYIGQG  MMSRAGIFRAS GIAVDM+NR+F+LPSF+DVLE
Sbjct: 204 RGTVLQGQQTDPYHFERNALYIGQGATMMSRAGIFRASGGIAVDMNNRVFKLPSFHDVLE 263

Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
           GEIFLQNLPSIVTAHALDPQ+ ERILDMCAAPGGKTTAIA L++D+GEV+AVDRSHNKVM
Sbjct: 264 GEIFLQNLPSIVTAHALDPQQDERILDMCAAPGGKTTAIAILMKDQGEVIAVDRSHNKVM 323

Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV 360
           DIQKLAAEMGL CITTYKLDALKAV R NESND       KD   +T Q+SDS +L  E 
Sbjct: 324 DIQKLAAEMGLHCITTYKLDALKAVCRSNESNDMTTPSCRKDAEGVTLQSSDSPRLQMEK 383

Query: 361 PSIAAEGLNGDKSCKE 376
              + E    D +C+E
Sbjct: 384 NQCSTEAFAADFACQE 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143528|emb|CBI22089.3| unnamed protein product [Vitis vinifera]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 279/376 (74%), Positives = 318/376 (84%), Gaps = 6/376 (1%)

Query: 1   MDLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDV 60
           MD S RY Y+P+LRWNPQVE YF +AYG  HFSRI++AL RPSCYSCIRVNTLK+T+D V
Sbjct: 1   MDPSDRYCYNPVLRWNPQVEAYFSKAYGPHHFSRITQALARPSCYSCIRVNTLKSTSDAV 60

Query: 61  IQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPD 120
           I+KLLAIIQ     E ++ ++ K  L+ G+IS+ Q+PGL+YVVFV+GSGPHTI+YGYE D
Sbjct: 61  IEKLLAIIQ-----ETELGNTKKS-LETGSISKCQLPGLDYVVFVRGSGPHTIEYGYEID 114

Query: 121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGIT 180
           +PPKEVIVSRKCAEAVLRGAQVYVPGV+ACSSHVEKGDVVAVSVAVEQP  DGGWG+GIT
Sbjct: 115 RPPKEVIVSRKCAEAVLRGAQVYVPGVLACSSHVEKGDVVAVSVAVEQPGTDGGWGVGIT 174

Query: 181 RGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE 240
           RGTVLQG QTDPY+FER+ LYIGQG  MMSRAGIFRAS GIAVDM+NR+F+LPSF+DVLE
Sbjct: 175 RGTVLQGQQTDPYHFERNALYIGQGATMMSRAGIFRASGGIAVDMNNRVFKLPSFHDVLE 234

Query: 241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM 300
           GEIFLQNLPSIVTAHALDPQ+ ERILDMCAAPGGKTTAIA L++D+GEV+AVDRSHNKVM
Sbjct: 235 GEIFLQNLPSIVTAHALDPQQDERILDMCAAPGGKTTAIAILMKDQGEVIAVDRSHNKVM 294

Query: 301 DIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV 360
           DIQKLAAEMGL CITTYKLDALKAV R NESND       KD   +T Q+SDS +L  E 
Sbjct: 295 DIQKLAAEMGLHCITTYKLDALKAVCRSNESNDMTTPSCRKDAEGVTLQSSDSPRLQMEK 354

Query: 361 PSIAAEGLNGDKSCKE 376
              + E    D +C+E
Sbjct: 355 NQCSTEAFAADFACQE 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453870|ref|XP_004144679.1| PREDICTED: putative methyltransferase NSUN6-like [Cucumis sativus]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/372 (71%), Positives = 302/372 (81%), Gaps = 4/372 (1%)

Query: 2   DLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVI 61
           DL  RYSY+P+L WNPQVEEYF++AYGA+HFS ISKALTRPSCYSCIRVNTLK+TTD VI
Sbjct: 7   DLPERYSYNPVLIWNPQVEEYFVKAYGAEHFSHISKALTRPSCYSCIRVNTLKSTTDTVI 66

Query: 62  QKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDK 121
           +KL  I++  G  +  V      + Q+ +IS  Q+PGL+YVVFV+GSGPHTIDYGY   +
Sbjct: 67  EKLSTIVKEMGYEKKPVTE----KFQHPSISRCQVPGLDYVVFVRGSGPHTIDYGYANGR 122

Query: 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITR 181
           PPKEVIVSRKCAEAVLRGAQVYVPGVMACS+HVEKGD VAVSVAVEQ  +DGGW LGITR
Sbjct: 123 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSAHVEKGDAVAVSVAVEQRGVDGGWSLGITR 182

Query: 182 GTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEG 241
           GTV+QG  TDPY+ ER+GLYIGQGT  MSRAGIFR S GIAVDM+NR+F+LPSFYDVLEG
Sbjct: 183 GTVVQGLPTDPYHSERNGLYIGQGTTAMSRAGIFRVSGGIAVDMNNRVFKLPSFYDVLEG 242

Query: 242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301
           EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIA L++DEGEV+A DRSHNKVMD
Sbjct: 243 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAILMKDEGEVIAADRSHNKVMD 302

Query: 302 IQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVP 361
           IQKLAAEMGL CI TYKLDALK+V R  +S           N+ + + +S+SM L    P
Sbjct: 303 IQKLAAEMGLSCIATYKLDALKSVNRNVDSCKGTASVCIDANDGVVNNSSNSMNLDNVEP 362

Query: 362 SIAAEGLNGDKS 373
           S   E    DK+
Sbjct: 363 SSVTEVSEVDKT 374

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449504229|ref|XP_004162289.1| PREDICTED: LOW QUALITY PROTEIN: putative methyltransferase NSUN6-like [Cucumis sativus]

 Score =  541 bits (1393), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/372 (71%), Positives = 303/372 (81%), Gaps = 1/372 (0%)

Query: 2   DLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVI 61
           DL  RYSY+P+L WNPQVEEYF++AYGA+HFS ISKALTRPSCYSCIRVNTLK+TTD VI
Sbjct: 7   DLPERYSYNPVLIWNPQVEEYFVKAYGAEHFSHISKALTRPSCYSCIRVNTLKSTTDTVI 66

Query: 62  QKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDK 121
           +KL  I++  G S ++    V  + Q+ +IS  Q+PGL+YVVFV+GSGPHTIDYGY   +
Sbjct: 67  EKLSTIVKEMGCSNSE-NKPVTEKFQHPSISRCQVPGLDYVVFVRGSGPHTIDYGYANGR 125

Query: 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITR 181
           PPKEVIVSRKCAEAVLRGAQVYVPGVMACS+HVEKGD VAVSVAVEQ  +DGGW LGITR
Sbjct: 126 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSAHVEKGDAVAVSVAVEQRGVDGGWSLGITR 185

Query: 182 GTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEG 241
           GTV+QG  TDPY+ ER+GLYIGQGT  MSRAG FR S GIAVDM+NR+F+LPSFYDVLEG
Sbjct: 186 GTVVQGLPTDPYHSERNGLYIGQGTTAMSRAGXFRVSGGIAVDMNNRVFKLPSFYDVLEG 245

Query: 242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301
           EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIA L++DEGEV+A DRSHNKVMD
Sbjct: 246 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAILMKDEGEVIAADRSHNKVMD 305

Query: 302 IQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVP 361
           IQKLAAEMGL CI TYKLDALK+V R  +S           N+ + + +S+SM L    P
Sbjct: 306 IQKLAAEMGLSCIATYKLDALKSVNRNVDSCKGTASVCIDANDGVVNNSSNSMNLDNVEP 365

Query: 362 SIAAEGLNGDKS 373
           S   E    DK+
Sbjct: 366 SSVTEVSEVDKT 377

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574263|ref|XP_002528046.1| RNA binding protein, putative [Ricinus communis] gi|223532576|gb|EEF34364.1| RNA binding protein, putative [Ricinus communis]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 255/378 (67%), Positives = 305/378 (80%), Gaps = 14/378 (3%)

Query: 1   MDLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDV 60
           MD S RY ++P L+WNPQVE+YF +AYG D+FSRIS ALTRP  YSCIRVNTLKTT D V
Sbjct: 30  MDPSERYCFNPKLQWNPQVEDYFTKAYGPDYFSRISHALTRPPSYSCIRVNTLKTTADAV 89

Query: 61  IQKLLAIIQNSGSSEADVA--SSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYE 118
           ++KL+  ++ +   +   A  + ++ RL    I++ QIPGL+YV+FVKGSGPH IDYG+ 
Sbjct: 90  VEKLMEFVKETSFEDCSEAGRNDIEDRLCKSPITKCQIPGLDYVLFVKGSGPHMIDYGFS 149

Query: 119 PDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLG 178
           P  PPKEVIVSRKCAEAVLRGAQV+VPGVMACS+HVEKGD VAVSVA+EQ   DGGW +G
Sbjct: 150 PGAPPKEVIVSRKCAEAVLRGAQVFVPGVMACSAHVEKGDAVAVSVAIEQHCPDGGWAIG 209

Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV 238
           +TRGTVLQG  TDPYYF+R+GLYIGQG   MSRAG+FR  EGIAVDM NR+F+LPSF+DV
Sbjct: 210 MTRGTVLQGLPTDPYYFQRNGLYIGQGKTTMSRAGLFRVPEGIAVDMSNRVFKLPSFHDV 269

Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
           L+GEIFLQN PSI+TAHALDPQKGER+LDMCAAPGGKTTAIA L+++EGE++A DRSHNK
Sbjct: 270 LKGEIFLQNFPSIITAHALDPQKGERVLDMCAAPGGKTTAIAILMKNEGEIIACDRSHNK 329

Query: 299 VMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK 358
           V+DIQKLAAEM L CITTYKLDALKAVRRK ES+ EP            +  S+S+++ +
Sbjct: 330 VLDIQKLAAEMSLTCITTYKLDALKAVRRKTESH-EP-----------VTVGSESLRVQE 377

Query: 359 EVPSIAAEGLNGDKSCKE 376
           E PS A +GLN DK+C E
Sbjct: 378 EKPSSAVQGLNPDKACNE 395

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553761|ref|XP_003545221.1| PREDICTED: putative methyltransferase NSUN6-like [Glycine max]

 Score =  499 bits (1286), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 247/366 (67%), Positives = 293/366 (80%), Gaps = 11/366 (3%)

Query: 2   DLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVI 61
           D S RYSY+P+L WNPQV  YF++AYGADHFSRIS ALTRPS YSCIRVNTL++T D VI
Sbjct: 5   DPSNRYSYTPILNWNPQVHHYFLKAYGADHFSRISTALTRPSRYSCIRVNTLRSTGDAVI 64

Query: 62  QKLLAIIQNS------GSSEADVASSVK--GRLQNGTISESQIPGLEYVVFVKGSGPHTI 113
            KL +++ N+        S  DVA+ +K         IS+ +IPGL+YVVFV GSGP  I
Sbjct: 65  HKLRSLVPNADVPPPQSDSGDDVANPLKECSAAAAAPISKCEIPGLDYVVFVWGSGPRRI 124

Query: 114 DYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDG 173
            YG   D PPKEVIVSRKCAEAVLRGAQVYVPGVMACS+HVEKGD VAVSVAVE+   DG
Sbjct: 125 HYG---DAPPKEVIVSRKCAEAVLRGAQVYVPGVMACSAHVEKGDTVAVSVAVEKQGADG 181

Query: 174 GWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLP 233
           GWG+ +TRGTVLQGS+TDPYYFER+GLYIGQGTAM+SRAG+FR SEG+ VDM +R+++L 
Sbjct: 182 GWGIAMTRGTVLQGSETDPYYFERNGLYIGQGTAMLSRAGMFRVSEGVGVDMKDRVYELH 241

Query: 234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
           SF++VLEGEIFLQNLPSI+ AHALDPQKGERILDMCAAPGGKTTAIA L++DEGE++A D
Sbjct: 242 SFHNVLEGEIFLQNLPSIIAAHALDPQKGERILDMCAAPGGKTTAIAILMKDEGEIIATD 301

Query: 294 RSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDS 353
           RSHNKV+DIQKLAAEMGL CI T+KLDALK+V R+++ +   + C +     +T+Q  DS
Sbjct: 302 RSHNKVLDIQKLAAEMGLSCIKTFKLDALKSVCRRDDIDTFTDPCCNNAKIDVTNQVLDS 361

Query: 354 MKLHKE 359
             L  E
Sbjct: 362 PNLQVE 367

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843456|ref|XP_002889609.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297335451|gb|EFH65868.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  490 bits (1261), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 245/391 (62%), Positives = 298/391 (76%), Gaps = 10/391 (2%)

Query: 4   SGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK 63
           S RY Y P+LRWNPQVE+YF +AYG DHF+RISKALTRPS YSCIRVNT+KTT+D VI+K
Sbjct: 44  SERYCYDPVLRWNPQVEDYFTKAYGPDHFARISKALTRPSSYSCIRVNTVKTTSDAVIEK 103

Query: 64  LLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPP 123
           L  I+ +S      V         +  I++ QIPGL+YVV V GSGPH I+Y    + PP
Sbjct: 104 LTKILNDSEEGLKLVQPD-----GSSPIAKCQIPGLDYVVLVNGSGPHRIEYDSGLEIPP 158

Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
           KEV+VSRKCAEAVLRGAQVYVPGV+AC++HVEKGD VAV VA+EQP  +G W + +TRGT
Sbjct: 159 KEVLVSRKCAEAVLRGAQVYVPGVLACTAHVEKGDAVAVCVAMEQPGDEGDWSVNMTRGT 218

Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEI 243
            LQG  TDPYY ERSGLYIG GTAM+SRAG+FR   GIAVD+ NR+F+LPS ++VLEGEI
Sbjct: 219 TLQGLSTDPYYRERSGLYIGMGTAMLSRAGMFRVPHGIAVDLSNRVFRLPSLHNVLEGEI 278

Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
           FLQNLPSI+ AHALDPQKGERILDMCAAPGGKTTAIA L+ DEGE+VA DRSHNKV+++Q
Sbjct: 279 FLQNLPSIIVAHALDPQKGERILDMCAAPGGKTTAIAILMNDEGEIVAADRSHNKVLNVQ 338

Query: 304 KLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSI 363
           KL+AEMGL CITT KLDALK+V   N  ND   + NS +N+ +TS +  S +  +E+ S+
Sbjct: 339 KLSAEMGLSCITTCKLDALKSVCIPNPPNDSTTIVNSDNNSSMTSHSELSSR--EEMTSL 396

Query: 364 AAEGLNGDKSCKEKG---RTCGECGMAQEEI 391
           A+     DKS +E     +T G   ++Q +I
Sbjct: 397 ASRKSKADKSWEENASPEQTNGGNNVSQADI 427

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561755|ref|NP_172143.3| NOL1/NOP2/sun-like protein [Arabidopsis thaliana] gi|30102680|gb|AAP21258.1| At1g06560 [Arabidopsis thaliana] gi|110743735|dbj|BAE99704.1| hypothetical protein [Arabidopsis thaliana] gi|332189884|gb|AEE28005.1| NOL1/NOP2/sun-like protein [Arabidopsis thaliana]

 Score =  474 bits (1221), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 231/377 (61%), Positives = 288/377 (76%), Gaps = 7/377 (1%)

Query: 4   SGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK 63
           S RY Y P+LRWNP+VE+YF +AYG DHF+RISKALTRPS YSCIRVNT+KTT+D VI+K
Sbjct: 44  SERYCYDPVLRWNPEVEDYFTKAYGPDHFARISKALTRPSSYSCIRVNTVKTTSDAVIEK 103

Query: 64  LLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPP 123
           L  I+ +S      V         +  +++ QIPGL+YVVFV GSGPH I+Y    + PP
Sbjct: 104 LTKILNDSEEGLKLVQPD-----GSSPVTKCQIPGLDYVVFVNGSGPHKIEYDSGLENPP 158

Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
           KEV+VSRKCAEAVLRGAQVYVPGV+AC++HVEKGD VAV VA+EQP  +G W + +TRGT
Sbjct: 159 KEVLVSRKCAEAVLRGAQVYVPGVLACTAHVEKGDAVAVCVAMEQPGDEGDWSVNMTRGT 218

Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEI 243
            LQG  TDPYY ERSGLYIG GTAM+SRAG+FR   GIAVD+++R+F+LPS +++LEGEI
Sbjct: 219 TLQGLPTDPYYRERSGLYIGMGTAMLSRAGMFRVPNGIAVDLNHRVFRLPSLHNILEGEI 278

Query: 244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
           FLQNLPSI+ AHALDPQKGERILDMCAAPGGKTTAIA L+ DEGE+VA DRSHNKV+ +Q
Sbjct: 279 FLQNLPSIIVAHALDPQKGERILDMCAAPGGKTTAIAILMNDEGEIVAADRSHNKVLVVQ 338

Query: 304 KLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSI 363
            L+AEMG  CITT KLDALK+V      N+   + N  +++ +TS +   +  ++E+ S+
Sbjct: 339 NLSAEMGFTCITTCKLDALKSVCLPTTLNESTILINGDNSSSMTSHS--ELSSNEEMTSV 396

Query: 364 AAEGLNGDKSCKEKGRT 380
            +     DKSC++   T
Sbjct: 397 TSRRSEADKSCEKNDST 413

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494215|ref|XP_003617396.1| Ribosomal RNA small subunit methyltransferase B [Medicago truncatula] gi|355518731|gb|AET00355.1| Ribosomal RNA small subunit methyltransferase B [Medicago truncatula]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 233/366 (63%), Positives = 290/366 (79%), Gaps = 16/366 (4%)

Query: 4   SGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK 63
           S RYS++P L WNPQ+  YFI AYG+DHFSRIS ALTRPS YSCIRVNTL +T+D VI+K
Sbjct: 11  SQRYSFNPTLNWNPQLHNYFINAYGSDHFSRISSALTRPSRYSCIRVNTLCSTSDAVIEK 70

Query: 64  LLAIIQN--SGSSEADVASSVKGRLQNGTISES------QIPGLEYVVFVKGSGPHTIDY 115
           L + ++   +GS   DV  +V   L+    S+S      +IPGL+YVVFV GSGPH +DY
Sbjct: 71  LRSTVKEKLNGSDCEDVDDAVN-PLKEDLDSDSSLLFKCKIPGLDYVVFVWGSGPHHVDY 129

Query: 116 GYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGW 175
           G   +  PKEVIVSRKCAEAVLRGAQVYVPG+MACS+HVEKGD VAVSVA+EQ   DGGW
Sbjct: 130 G---NVAPKEVIVSRKCAEAVLRGAQVYVPGIMACSAHVEKGDTVAVSVAIEQQGSDGGW 186

Query: 176 GLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSF 235
             G+TRG VLQGS+TDPYY ER+GLYIGQGTAM+SRAG+FR +EG+ VDM +R+++L SF
Sbjct: 187 SSGMTRGIVLQGSETDPYYLERNGLYIGQGTAMLSRAGMFRVTEGLGVDMKDRVYELHSF 246

Query: 236 YDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
           ++VLEGEIFLQNLPSI+ AHALDPQ GERILDMCAAPGGKTTAIA L++D+GEV+A DRS
Sbjct: 247 HNVLEGEIFLQNLPSIIAAHALDPQMGERILDMCAAPGGKTTAIAILMKDKGEVIATDRS 306

Query: 296 HNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK 355
           HNKV+DI+KLAAE+GL CI  +KLDALK+V ++N+     + C++   N + +Q S +++
Sbjct: 307 HNKVLDIEKLAAELGLSCIKAFKLDALKSVSQRNDI----DTCHNNATNDVKNQVSSNLQ 362

Query: 356 LHKEVP 361
           + +  P
Sbjct: 363 VERMSP 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226495531|ref|NP_001145845.1| hypothetical protein [Zea mays] gi|219884681|gb|ACL52715.1| unknown [Zea mays] gi|413920972|gb|AFW60904.1| hypothetical protein ZEAMMB73_425055 [Zea mays]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 225/333 (67%), Positives = 266/333 (79%), Gaps = 7/333 (2%)

Query: 6   RYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLL 65
           RY+YSP LRW P+VEEYF  AYG DHF+RIS+AL  PSCYSCIRVNTLK++TD V+ KLL
Sbjct: 19  RYTYSPRLRWQPEVEEYFNTAYGRDHFARISEALAHPSCYSCIRVNTLKSSTDAVMHKLL 78

Query: 66  AII-QNSGSSEADVASSVK----GRLQNGTISESQIP--GLEYVVFVKGSGPHTIDYGYE 118
            ++ +N  S+  +    V+     + Q G     + P  GLE V+FV+GSGPH + YG +
Sbjct: 79  DLVCKNELSAVINGLEVVELNGGDQSQEGCSLVHKCPYAGLENVLFVQGSGPHVLHYGSQ 138

Query: 119 PDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLG 178
           PD+  KEV+VSRKCAE+VLRGAQVYVPGV+ACSSHVEKGD VAVSVA+EQP  + GW +G
Sbjct: 139 PDQAVKEVVVSRKCAESVLRGAQVYVPGVLACSSHVEKGDKVAVSVAIEQPVKEDGWAVG 198

Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV 238
           ITRGTVLQG Q+D +Y ER GLYIGQGTA MSR+ IFR   GIAV+M  R+++LPSF DV
Sbjct: 199 ITRGTVLQGLQSDAHYEERKGLYIGQGTAAMSRSAIFRVPHGIAVEMTERVYKLPSFNDV 258

Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
           LEGEIFLQNLPS+VTA  LDPQ GERILDMCAAPGGKTTAIA L+RDEGEVVA+DRSHNK
Sbjct: 259 LEGEIFLQNLPSVVTARVLDPQSGERILDMCAAPGGKTTAIAILMRDEGEVVALDRSHNK 318

Query: 299 VMDIQKLAAEMGLKCITTYKLDALKAVRRKNES 331
           VMDI KLA+EM L CI  YKLDALK+VR+ +E+
Sbjct: 319 VMDILKLASEMDLSCIKAYKLDALKSVRKTDEA 351

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	422
TAIR|locus:2009170	599	AT1G06560 [Arabidopsis thalian	0.874	0.616	0.624	1.7e-121
UNIPROTKB|E1BQJ7	469	NSUN6 "Uncharacterized protein	0.466	0.420	0.418	1.6e-42
RGD|1309535	476	Nsun6 "NOP2/Sun domain family,	0.436	0.386	0.443	9.4e-40
UNIPROTKB|F1RWA0	472	NSUN6 "Uncharacterized protein	0.457	0.408	0.415	1.9e-39
UNIPROTKB|Q8TEA1	469	NSUN6 "Putative methyltransfer	0.436	0.392	0.395	2.7e-39
MGI|MGI:1921705	476	Nsun6 "NOL1/NOP2/Sun domain fa	0.436	0.386	0.424	5.1e-37
UNIPROTKB|E2RDT7	469	NSUN6 "Uncharacterized protein	0.436	0.392	0.409	2.7e-36
UNIPROTKB|F1MC44	408	NSUN6 "Uncharacterized protein	0.457	0.473	0.398	5.7e-36
DICTYBASE|DDB_G0290553	501	DDB_G0290553 "PUA domain-conta	0.725	0.610	0.293	3.4e-34
FB|FBgn0037200	439	CG11109 [Drosophila melanogast	0.443	0.425	0.393	6.2e-33

TAIR|locus:2009170 AT1G06560 [Arabidopsis thaliana (taxid:3702)]

 Score = 1195 (425.7 bits), Expect = 1.7e-121, P = 1.7e-121
 Identities = 236/378 (62%), Positives = 290/378 (76%)

Query:     4 SGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK 63
             S RY Y P+LRWNP+VE+YF +AYG DHF+RISKALTRPS YSCIRVNT+KTT+D VI+K
Sbjct:    44 SERYCYDPVLRWNPEVEDYFTKAYGPDHFARISKALTRPSSYSCIRVNTVKTTSDAVIEK 103

Query:    64 LLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPP 123
             L  I+ +S   E        G   +  +++ QIPGL+YVVFV GSGPH I+Y    + PP
Sbjct:   104 LTKILNDS--EEGLKLVQPDG---SSPVTKCQIPGLDYVVFVNGSGPHKIEYDSGLENPP 158

Query:   124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
             KEV+VSRKCAEAVLRGAQVYVPGV+AC++HVEKGD VAV VA+EQP  +G W + +TRGT
Sbjct:   159 KEVLVSRKCAEAVLRGAQVYVPGVLACTAHVEKGDAVAVCVAMEQPGDEGDWSVNMTRGT 218

Query:   184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEI 243
              LQG  TDPYY ERSGLYIG GTAM+SRAG+FR   GIAVD+++R+F+LPS +++LEGEI
Sbjct:   219 TLQGLPTDPYYRERSGLYIGMGTAMLSRAGMFRVPNGIAVDLNHRVFRLPSLHNILEGEI 278

Query:   244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
             FLQNLPSI+ AHALDPQKGERILDMCAAPGGKTTAIA L+ DEGE+VA DRSHNKV+ +Q
Sbjct:   279 FLQNLPSIIVAHALDPQKGERILDMCAAPGGKTTAIAILMNDEGEIVAADRSHNKVLVVQ 338

Query:   304 KLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDS-MKLHKEVPS 362
              L+AEMG  CITT KLDALK+V      N+   + N  DN+  +S TS S +  ++E+ S
Sbjct:   339 NLSAEMGFTCITTCKLDALKSVCLPTTLNESTILING-DNS--SSMTSHSELSSNEEMTS 395

Query:   363 IAAEGLNGDKSCKEKGRT 380
             + +     DKSC++   T
Sbjct:   396 VTSRRSEADKSCEKNDST 413

GO:0003723 "RNA binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E1BQJ7 NSUN6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 396 (144.5 bits), Expect = 1.6e-42, Sum P(3) = 1.6e-42
 Identities = 92/220 (41%), Positives = 132/220 (60%)

Query:   121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGIT 180
             K   EVIV  +C  AVLRGA VYVPG+++ S  V+ GD+V+V   +E             
Sbjct:   109 KHESEVIVGAQCGYAVLRGAHVYVPGIISTSRFVKTGDLVSVYSDIE------------- 155

Query:   181 RGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPSFYD 237
              G   +G++     FE   +++G G + +SR+ IF  +    G+ V M   ++  PSF  
Sbjct:   156 -GKCKRGAKE----FEGVKVFLGNGISELSRSDIFGLNGRTTGLGVRMTEPVYLSPSFES 210

Query:   238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN 297
             VL   +FLQNLPS+V +H L+PQ GERILDMCAAPGGKTT +A+L+ D+GEV+A+D+  N
Sbjct:   211 VLPSHLFLQNLPSVVVSHVLNPQPGERILDMCAAPGGKTTHLATLMHDQGEVIAMDKIAN 270

Query:   298 KVMDIQKLAAEMGLKCITTYKLDALKA--VRRKNESNDEP 335
             KV  I++ A  + L CI  +  D  KA  V ++ +  +EP
Sbjct:   271 KVKKIKQNAELLQLNCIKAFCYDGTKALSVEKREDKQEEP 310

GO:0003723 "RNA binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

RGD|1309535 Nsun6 "NOP2/Sun domain family, member 6" [Rattus norvegicus (taxid:10116)]

 Score = 395 (144.1 bits), Expect = 9.4e-40, Sum P(2) = 9.4e-40
 Identities = 91/205 (44%), Positives = 129/205 (62%)

Query:   125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
             EVIV  +C  AVLRGA VYVPGV++ S  ++ GDVV+V   +              +G  
Sbjct:   113 EVIVGAQCGNAVLRGAHVYVPGVVSASKFMKAGDVVSVYSDI--------------KGKC 158

Query:   185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPSFYDVLEG 241
              +G++     F+ + +++G G + +SR  IF      +GI + M   I+  PSF +VL G
Sbjct:   159 KKGAKE----FDGTKVFLGNGISELSRKDIFNGLPDLKGIGIRMTEPIYLSPSFDNVLSG 214

Query:   242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301
              IFLQNLPS V AH LDPQ GE+ILD+CAAPGGKTT IA+L+RD+GEV+A+D+   KV  
Sbjct:   215 YIFLQNLPSTVVAHVLDPQPGEKILDLCAAPGGKTTHIAALMRDQGEVIALDKILTKVTK 274

Query:   302 IQKLAAEMGLKCITTYKLDALKAVR 326
             +++ A+ +GL  I  +  DA KA++
Sbjct:   275 LKQNASLLGLHSIRAFCFDATKALK 299

GO:0003723 "RNA binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1RWA0 NSUN6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 390 (142.3 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
 Identities = 89/214 (41%), Positives = 129/214 (60%)

Query:   125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
             EVIV  +C  +VLRGA VYVPG+++ S  ++ GD V+V   +              +G  
Sbjct:   113 EVIVGAQCGNSVLRGAHVYVPGIVSASKFMKGGDTVSVYSDI--------------KGKC 158

Query:   185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPSFYDVLEG 241
              +G++     F+ + +++G G + +SR  IF      +GI + M   ++  PSF DVL G
Sbjct:   159 KKGAKE----FDGTKIFLGNGISELSRKEIFSGLPDLKGIGIRMTEPVYLSPSFDDVLPG 214

Query:   242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301
              +FLQNLPS V  H LDPQ GERILD+CAAPGGKTT IA+ +RD+GEV+A+D+  NKV  
Sbjct:   215 YLFLQNLPSAVVTHVLDPQPGERILDLCAAPGGKTTHIAARMRDQGEVIALDKIANKVEK 274

Query:   302 IQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP 335
             I++ A  +GL  I  +  D  KA++   ++  EP
Sbjct:   275 IKQNALLLGLNSIRAFCFDGTKALKLDIDTEGEP 308

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|Q8TEA1 NSUN6 "Putative methyltransferase NSUN6" [Homo sapiens (taxid:9606)]

 Score = 358 (131.1 bits), Expect = 2.7e-39, Sum P(3) = 2.7e-39
 Identities = 81/205 (39%), Positives = 123/205 (60%)

Query:   125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
             E IV  +C  AVLRGA VY PG+++ S  ++ GDV++V   +              +G  
Sbjct:   113 EAIVGAQCGNAVLRGAHVYAPGIVSASQFMKAGDVISVYSDI--------------KGKC 158

Query:   185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPSFYDVLEG 241
              +G++     F+ + +++G G + +SR  IF      +G+ + M   ++  PSF  VL  
Sbjct:   159 KKGAKE----FDGTKVFLGNGISELSRKEIFSGLPELKGMGIRMTEPVYLSPSFDSVLPR 214

Query:   242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301
              +FLQNLPS + +H L+PQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A+D+  NKV  
Sbjct:   215 YLFLQNLPSALVSHVLNPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKIFNKVEK 274

Query:   302 IQKLAAEMGLKCITTYKLDALKAVR 326
             I++ A  +GL  I  +  D  KAV+
Sbjct:   275 IKQNALLLGLNSIRAFCFDGTKAVK 299

GO:0003723 "RNA binding" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

MGI|MGI:1921705 Nsun6 "NOL1/NOP2/Sun domain family member 6" [Mus musculus (taxid:10090)]

 Score = 376 (137.4 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
 Identities = 87/205 (42%), Positives = 126/205 (61%)

Query:   125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
             EVIV  +C  AVLRGA VYVPG+++ S  ++ GDV++V   +               G  
Sbjct:   113 EVIVGAQCGNAVLRGAHVYVPGIVSASKFMKAGDVISVYSDIN--------------GKC 158

Query:   185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPSFYDVLEG 241
              +G++     F+ + +++G G + +SR  IF      +GI + M   I+  PSF +VL  
Sbjct:   159 KKGAKE----FDGTKVFLGNGISELSRKDIFNGLPDLKGIGIRMTEPIYLSPSFDNVLPS 214

Query:   242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301
              IFLQNLPS V AH LDPQ GE+ILDMCAAPGGKTT  A+L++D+GEV+A+D+   KV  
Sbjct:   215 YIFLQNLPSTVVAHVLDPQPGEKILDMCAAPGGKTTHTAALMQDKGEVIALDKILTKVNK 274

Query:   302 IQKLAAEMGLKCITTYKLDALKAVR 326
             +++ A+ +GL  I  +  DA KA++
Sbjct:   275 LKQNASLLGLHSIRAFCFDATKALK 299

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|E2RDT7 NSUN6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 364 (133.2 bits), Expect = 2.7e-36, Sum P(2) = 2.7e-36
 Identities = 84/205 (40%), Positives = 123/205 (60%)

Query:   125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
             E IV  +C  AVLRGA VYVPG+++ S  ++ GDV +V   +              +G  
Sbjct:   113 EAIVGAQCGNAVLRGAHVYVPGIVSTSKFMKAGDVTSVYSDI--------------KGKC 158

Query:   185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPSFYDVLEG 241
              +G++     F+ + +++G G + +SR  IF      +G  + M   ++  PSF +VL  
Sbjct:   159 KKGAKE----FDGTKVFLGNGISELSRKEIFSGVPELKGRGIRMTEPVYLSPSFDNVLPR 214

Query:   242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301
              +FLQNLPS V  H LDPQ GE+ILD+CAAPGGKTT IA+L+RD+GEV+A+D+  NKV  
Sbjct:   215 YLFLQNLPSAVVTHVLDPQPGEKILDLCAAPGGKTTHIAALMRDQGEVIALDKISNKVEK 274

Query:   302 IQKLAAEMGLKCITTYKLDALKAVR 326
             I++ A  +GL  I  +  D  KA++
Sbjct:   275 IKQNALLLGLNSIKAFCFDGTKALK 299

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

UNIPROTKB|F1MC44 NSUN6 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 366 (133.9 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
 Identities = 86/216 (39%), Positives = 129/216 (59%)

Query:   125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTV 184
             EVIV  +C  AVLRGA VYVPG+++ S  ++ GD V+V   +              +G  
Sbjct:   113 EVIVGAQCGSAVLRGAHVYVPGIVSASKFMKGGDDVSVYSDI--------------KGKC 158

Query:   185 LQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRAS---EGIAVDMHNRIFQLPSFYDVLEG 241
              +G++     F+ + +++G G + +SR  IF      +G+ V M   ++  PSF +VL  
Sbjct:   159 KKGAKE----FDGTKIFLGNGISELSRKEIFSGLPELKGVGVRMTEPVYLSPSFDNVLPS 214

Query:   242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD 301
              +FLQNLPS V +H LDPQ GE+ILD+CAAPGGKTT IA+L+ D+GEV+A+D+   KV  
Sbjct:   215 YLFLQNLPSAVVSHVLDPQPGEKILDLCAAPGGKTTHIAALMHDQGEVIALDKISKKVEK 274

Query:   302 IQKLAAEMGLKCITTYKLDALKAVRRK--NESNDEP 335
             I++ A  +GL  I  +  D  KA++     +++ EP
Sbjct:   275 IKQNALLLGLNSIRAFCFDGTKALKLDMVKDTDGEP 310

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

DICTYBASE|DDB_G0290553 DDB_G0290553 "PUA domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 350 (128.3 bits), Expect = 3.4e-34, Sum P(2) = 3.4e-34
 Identities = 102/347 (29%), Positives = 184/347 (53%)

Query:    18 QVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLL-------AIIQN 70
             +V  + I+ YG +H  RI K++T+   Y+ IRVNT+ T  D ++  L          I+N
Sbjct:    36 EVLNHLIKYYGKEHMERIQKSMTQTFLYTTIRVNTMNTNKDKLLIDLSNHFKTNEKSIEN 95

Query:    71 SG-----SSEADVASSVKGRLQNGTISESQIPGL--EYVVFVKGSGPHTIDYGYEPDKPP 123
                     S  D+ ++++    N   +  +I     +  +F+K  GP  I    +P  P 
Sbjct:    96 QEIFTNFKSFNDILNNIENN-NNDNDNNDEIKNQISKDTIFIKTIGP-LIP---KPIYP- 149

Query:   124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
              ++IV   C EAVLRG+ ++  GV+  + +++KG++V+V V     T+D      +++G 
Sbjct:   150 -QIIVDLICGEAVLRGSNIFSIGVLGSNKYIKKGNMVSVFV-----TIDSR----VSKGE 199

Query:   184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEI 243
             + +        F+    +IG G +++ R    +   G+A++M  R++  P    VLE ++
Sbjct:   200 IFEDC------FKEKCAFIGNGISLLDRDDYHQTRVGVAIEMTERLYVCPPLNSVLEDKM 253

Query:   244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQ 303
             FLQ+LPSI T + L+P+ G++I+DMCAAPGGKTT IASL++ + E+   ++++ K  +  
Sbjct:   254 FLQHLPSIYTVYQLEPKLGDKIIDMCAAPGGKTTLIASLIQ-QFEINN-NQNNQKYQNNN 311

Query:   304 KLAAEMGLKCITTYKLDALKAVRR-KNESNDEPNMCNSKDNNYITSQ 349
             ++  E  +  +   K    K +   K  S D+   C +KD++ +T +
Sbjct:   312 EIKTE--IFALDKNKGKVKKIIDLCKRLSLDKYVTCLAKDSSKLTKE 356

GO:0003723 "RNA binding" evidence=IEA

FB|FBgn0037200 CG11109 [Drosophila melanogaster (taxid:7227)]

 Score = 327 (120.2 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
 Identities = 83/211 (39%), Positives = 120/211 (56%)

Query:   120 DKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGI 179
             D   KEV+V   C  A+LRGA +Y PGV+A  S+ E+ ++V V        LDG      
Sbjct:    98 DSELKEVVVDTNCGAALLRGAHIYAPGVLAMESNTEREELVNVYA-----DLDGK----C 148

Query:   180 TRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE----GIAVDMHNRIFQLPSF 235
              RGTV +       Y   + +++G G  +M R  +F  +E    G+AV+M + +  +P+ 
Sbjct:   149 KRGTVKR-------YESPNKVFLGTGKVLMQRYQLFNNAEKPASGVAVEMQSNVSGVPTL 201

Query:   236 YDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
              D+   +  LQNLPSIV    LDPQ GERILDMCAAPG KT+ IA L+ D G VVA+D S
Sbjct:   202 GDLSSEDGLLQNLPSIVCVRVLDPQPGERILDMCAAPGNKTSHIAELMGDRGSVVALDNS 261

Query:   296 HNKVMDIQKLAAEMG-LKCITTYKLDALKAV 325
              ++V   + +  ++G  K IT +  ++ +AV
Sbjct:   262 ASRV---RSMLPKLGHYKSITAHVFNSTEAV 289

GO:0005730 "nucleolus" evidence=ISS

GO:0008649 "rRNA methyltransferase activity" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	422
COG0144	355	COG0144, Sun, tRNA and rRNA cytosine-C5-methylases	2e-25
PRK14902	444	PRK14902, PRK14902, 16S rRNA methyltransferase B;	1e-24
PRK14901	434	PRK14901, PRK14901, 16S rRNA methyltransferase B;	2e-21
PRK14904	445	PRK14904, PRK14904, 16S rRNA methyltransferase B;	4e-19
TIGR00446	264	TIGR00446, nop2p, NOL1/NOP2/sun family putative RN	1e-13
pfam01189	277	pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family	5e-13
TIGR00563	426	TIGR00563, rsmB, ribosomal RNA small subunit methy	1e-12
PRK14903	431	PRK14903, PRK14903, 16S rRNA methyltransferase B;	6e-11
PRK10901	427	PRK10901, PRK10901, 16S rRNA methyltransferase B;	3e-10
PRK11933	470	PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransf	3e-06
PRK04270	300	PRK04270, PRK04270, H/ACA RNA-protein complex comp	3e-06
pfam13847	151	pfam13847, Methyltransf_31, Methyltransferase doma	9e-05
pfam01472	74	pfam01472, PUA, PUA domain	1e-04
PRK14902	444	PRK14902, PRK14902, 16S rRNA methyltransferase B;	3e-04
PRK08317	241	PRK08317, PRK08317, hypothetical protein; Provisio	5e-04
smart00359	76	smart00359, PUA, Putative RNA-binding Domain in Ps	8e-04
COG0293	205	COG0293, FtsJ, 23S rRNA methylase [Translation, ri	0.003

>gnl|CDD|223222 COG0144, Sun, tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

 Score =  105 bits (265), Expect = 2e-25
 Identities = 40/100 (40%), Positives = 61/100 (61%), Gaps = 4/100 (4%)

Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
           I +LP F    EG I++Q+  S + A  LDP+ GER+LD+CAAPGGKTT +A L+ +EG 
Sbjct: 127 IGRLPEF---AEGLIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGA 183

Query: 289 -VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR 327
            VVAVD S  ++  +++    +G++ +     DA +    
Sbjct: 184 IVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAEL 223

Length = 355

>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional

 Score =  104 bits (263), Expect = 1e-24
 Identities = 47/117 (40%), Positives = 69/117 (58%), Gaps = 4/117 (3%)

Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
           + E + ++  N I     F    +G I +Q+  S++ A ALDP+ G+ +LD CAAPGGKT
Sbjct: 210 SPEALVIEKGN-IAGTDLF---KDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKT 265

Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
           T IA LL++ G+VVA+D   +K+  I++ A  +GL  I T  LDA K   +  E  D
Sbjct: 266 THIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFD 322

Length = 444

>gnl|CDD|237856 PRK14901, PRK14901, 16S rRNA methyltransferase B; Provisional

 Score = 95.8 bits (239), Expect = 2e-21
 Identities = 44/93 (47%), Positives = 59/93 (63%), Gaps = 3/93 (3%)

Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
           I QLP +    EG   +Q+  + + A  LDPQ GE ILD CAAPGGKTT IA L+ D+GE
Sbjct: 223 IRQLPGYE---EGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGE 279

Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA 321
           + AVDRS +++  +Q+ A  +GLK I     D+
Sbjct: 280 IWAVDRSASRLKKLQENAQRLGLKSIKILAADS 312

Length = 434

>gnl|CDD|237858 PRK14904, PRK14904, 16S rRNA methyltransferase B; Provisional

 Score = 88.6 bits (220), Expect = 4e-19
 Identities = 32/83 (38%), Positives = 51/83 (61%)

Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
            G + +QN    +    L+PQ G  +LD+CAAPGGK+T +A L+++ G++ AVDR   K+
Sbjct: 229 LGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKL 288

Query: 300 MDIQKLAAEMGLKCITTYKLDAL 322
             I+  A+ +G+  I T + DA 
Sbjct: 289 EKIRSHASALGITIIETIEGDAR 311

Length = 445

>gnl|CDD|188051 TIGR00446, nop2p, NOL1/NOP2/sun family putative RNA methylase

 Score = 70.2 bits (172), Expect = 1e-13
 Identities = 26/61 (42%), Positives = 42/61 (68%)

Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
           L G  + Q   S++   AL+P++ ER+LDM AAPGGKTT I+ L++++G +VA + S ++
Sbjct: 49  LFGYYYPQEASSMIPPIALEPREDERVLDMAAAPGGKTTQISQLMKNKGCIVANEISKSR 108

Query: 299 V 299
            
Sbjct: 109 T 109

[Protein synthesis, tRNA and rRNA base modification]. Length = 264

>gnl|CDD|201649 pfam01189, Nol1_Nop2_Fmu, NOL1/NOP2/sun family

 Score = 68.6 bits (168), Expect = 5e-13
 Identities = 41/94 (43%), Positives = 55/94 (58%), Gaps = 4/94 (4%)

Query: 203 GQGTAMMSRAGIFRASEGIAV-DMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQK 261
               A +    + R    + V D+   I  LP F     G + +Q+  S + A AL+PQ+
Sbjct: 28  ALELAGVQLEPLGRYPHALPVGDLPYSIGSLPPF---ENGAVTVQDASSQLDAIALNPQE 84

Query: 262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
            E ILDMCAAPGGKTT IA L+++EG VVAVDR+
Sbjct: 85  DEFILDMCAAPGGKTTHIAELMKNEGTVVAVDRN 118

Length = 277

>gnl|CDD|233025 TIGR00563, rsmB, ribosomal RNA small subunit methyltransferase RsmB

 Score = 68.7 bits (168), Expect = 1e-12
 Identities = 32/90 (35%), Positives = 46/90 (51%), Gaps = 4/90 (4%)

Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
           +  LP F    EG + +Q+  +   A  L PQ  E ILD CAAPGGKTT I  L   + +
Sbjct: 209 VHALPGFE---EGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQ 264

Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318
           VVA+D   +++  + +    +GL      K
Sbjct: 265 VVALDIHEHRLKRVYENLKRLGLTIKAETK 294

This protein is also known as sun protein. The reading frame was originally interpreted as two reading frames, fmu and fmv. The recombinant protein from E. coli was shown to methylate only C967 of small subunit (16S) ribosomal RNA and to produce only m5C at that position. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles [Protein synthesis, tRNA and rRNA base modification]. Length = 426

>gnl|CDD|184896 PRK14903, PRK14903, 16S rRNA methyltransferase B; Provisional

 Score = 63.7 bits (155), Expect = 6e-11
 Identities = 33/82 (40%), Positives = 50/82 (60%)

Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
           +G   +Q   S +    ++ + G R+LD CAAPGGKTTAIA L++D+G+++AVD S  K+
Sbjct: 216 DGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKI 275

Query: 300 MDIQKLAAEMGLKCITTYKLDA 321
             ++K A  + L  I     DA
Sbjct: 276 QLVEKHAKRLKLSSIEIKIADA 297

Length = 431

>gnl|CDD|236790 PRK10901, PRK10901, 16S rRNA methyltransferase B; Provisional

 Score = 61.4 bits (150), Expect = 3e-10
 Identities = 23/40 (57%), Positives = 27/40 (67%), Gaps = 1/40 (2%)

Query: 254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVD 293
           A  L PQ GER+LD CAAPGGKT  I   L  + +VVA+D
Sbjct: 237 ATLLAPQNGERVLDACAAPGGKTAHILE-LAPQAQVVALD 275

Length = 427

>gnl|CDD|183387 PRK11933, yebU, rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 22/44 (50%), Positives = 29/44 (65%), Gaps = 2/44 (4%)

Query: 248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVA 291
           LP  V A   D    +R+LDM AAPG KTT IA+L+ ++G +VA
Sbjct: 102 LP--VAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVA 143

Length = 470

>gnl|CDD|179806 PRK04270, PRK04270, H/ACA RNA-protein complex component Cbf5p; Reviewed

 Score = 47.9 bits (115), Expect = 3e-06
 Identities = 31/108 (28%), Positives = 45/108 (41%), Gaps = 34/108 (31%)

Query: 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRG 182
           PK +I+     +A+  GA +Y PG+      ++KGD+VAV       TL G         
Sbjct: 226 PK-IIIKDSAVDAIAHGAPLYAPGIAKLEKGIKKGDLVAVF------TLKG--------- 269

Query: 183 TVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIF 230
                        E   L    G A+M    I +A +GI VD+  R+F
Sbjct: 270 -------------ELVAL----GKALMDSDEILKAEKGIVVDL-ERVF 299

Length = 300

>gnl|CDD|222415 pfam13847, Methyltransf_31, Methyltransferase domain

 Score = 42.0 bits (99), Expect = 9e-05
 Identities = 15/65 (23%), Positives = 30/65 (46%)

Query: 259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK 318
            + G ++LD+    G  T  +A  L    EVV +D S   +   ++ A ++G + +   +
Sbjct: 1   LKSGIKVLDLGCGTGYLTFILAEKLGPGAEVVGIDISEEAIEKAKENAKKLGYENVEFIQ 60

Query: 319 LDALK 323
            D  +
Sbjct: 61  GDIEE 65

This family appears to be have methyltransferase activity. Length = 151

>gnl|CDD|201816 pfam01472, PUA, PUA domain

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
             V+V     EA+L GA +  PGV+       +GD V V
Sbjct: 1   GRVVVDDGAVEAILNGASLLAPGVVEVDGDFRRGDEVVV 39

The PUA domain named after Pseudouridine synthase and Archaeosine transglycosylase, was detected in archaeal and eukaryotic pseudouridine synthases, archaeal archaeosine synthases, a family of predicted ATPases that may be involved in RNA modification, a family of predicted archaeal and bacterial rRNA methylases. Additionally, the PUA domain was detected in a family of eukaryotic proteins that also contain a domain homologous to the translation initiation factor eIF1/SUI1; these proteins may comprise a novel type of translation factors. Unexpectedly, the PUA domain was detected also in bacterial and yeast glutamate kinases; this is compatible with the demonstrated role of these enzymes in the regulation of the expression of other genes. It is predicted that the PUA domain is an RNA binding domain. Length = 74

>gnl|CDD|237857 PRK14902, PRK14902, 16S rRNA methyltransferase B; Provisional

 Score = 42.5 bits (101), Expect = 3e-04
 Identities = 22/62 (35%), Positives = 36/62 (58%), Gaps = 7/62 (11%)

Query: 3   LSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQ 62
           LS +YS+   L     V+  +I  YG +   +I ++L  P   + IRVNTLK + +++I+
Sbjct: 143 LSIKYSHPVWL-----VK-RWIDQYGEEKAEKILESLNEPP-KASIRVNTLKISVEELIE 195

Query: 63  KL 64
           KL
Sbjct: 196 KL 197

Length = 444

>gnl|CDD|181382 PRK08317, PRK08317, hypothetical protein; Provisional

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS 295
            L  Q G+R+LD+   PG     +A  +  EG VV +DRS
Sbjct: 14  LLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRS 53

Length = 241

>gnl|CDD|214635 smart00359, PUA, Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
            +V+V     +A+L GA +  PGV+     +++GDVV +
Sbjct: 1   GKVVVDDGAEKAILNGASLLAPGVVRVDGDIKEGDVVVI 39

Length = 76

>gnl|CDD|223370 COG0293, FtsJ, 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

 Score = 38.4 bits (90), Expect = 0.003
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)

Query: 261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVD----RSHNKVMDIQK 304
            G  ++D+ AAPGG +   A  L   G++VAVD    +    V+ +Q 
Sbjct: 45  PGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKPIPGVIFLQG 92

Length = 205

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	422
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	100.0
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	100.0
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	100.0
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	100.0
PRK14903	431	16S rRNA methyltransferase B; Provisional	100.0
PRK14901	434	16S rRNA methyltransferase B; Provisional	100.0
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	100.0
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	100.0
PRK14904	445	16S rRNA methyltransferase B; Provisional	100.0
PRK10901	427	16S rRNA methyltransferase B; Provisional	99.97
PRK14902	444	16S rRNA methyltransferase B; Provisional	99.97
KOG2198	375	consensus tRNA cytosine-5-methylases and related e	99.95
KOG2360	413	consensus Proliferation-associated nucleolar prote	99.81
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	99.31
COG2265	432	TrmA SAM-dependent methyltransferases related to t	99.28
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	99.27
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	99.23
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	99.19
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.15
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	99.15
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	99.12
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	99.11
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	99.1
COG2016	161	Predicted RNA-binding protein (contains PUA domain	99.09
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	99.07
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.07
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.07
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	99.06
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	99.06
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.06
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.06
PF01472	74	PUA: PUA domain; InterPro: IPR002478 The PUA (Pseu	99.04
PRK14967	223	putative methyltransferase; Provisional	99.03
PRK14560	160	putative RNA-binding protein; Provisional	99.0
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	98.98
TIGR00451	107	unchar_dom_2 uncharacterized domain 2. This unchar	98.97
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	98.97
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	98.97
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.93
PTZ00146	293	fibrillarin; Provisional	98.93
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.91
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	98.9
PRK04266	226	fibrillarin; Provisional	98.9
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.89
TIGR03684	150	arCOG00985 arCOG04150 universal archaeal PUA-domai	98.87
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	98.87
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.86
TIGR00438	188	rrmJ cell division protein FtsJ.	98.84
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	98.83
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.82
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	98.81
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.8
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	98.78
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	98.78
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	98.77
PRK14968	188	putative methyltransferase; Provisional	98.75
PRK07402	196	precorrin-6B methylase; Provisional	98.75
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	98.74
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.74
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.73
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.73
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	98.73
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.72
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.71
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	98.69
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	98.67
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	98.67
COG4123	248	Predicted O-methyltransferase [General function pr	98.63
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	98.63
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	98.62
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	98.61
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.6
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	98.6
PRK13795	636	hypothetical protein; Provisional	98.6
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	98.6
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	98.59
PLN02233	261	ubiquinone biosynthesis methyltransferase	98.58
PRK13534	639	7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr	98.57
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.56
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	98.55
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	98.54
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	98.53
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.53
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.52
COG0742	187	N6-adenine-specific methylase [DNA replication, re	98.5
PLN02476	278	O-methyltransferase	98.49
COG1041	347	Predicted DNA modification methylase [DNA replicat	98.48
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	98.47
PRK13794	479	hypothetical protein; Provisional	98.47
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.46
PRK11207	197	tellurite resistance protein TehB; Provisional	98.46
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	98.44
COG2890	280	HemK Methylase of polypeptide chain release factor	98.43
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.43
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.42
PRK10742	250	putative methyltransferase; Provisional	98.41
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.39
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	98.37
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	98.31
PLN02244	340	tocopherol O-methyltransferase	98.3
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.27
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.26
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.26
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	98.26
COG4122	219	Predicted O-methyltransferase [General function pr	98.25
COG2520	341	Predicted methyltransferase [General function pred	98.25
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.24
PRK08317	241	hypothetical protein; Provisional	98.23
PHA03411	279	putative methyltransferase; Provisional	98.22
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	98.21
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.21
PHA03412	241	putative methyltransferase; Provisional	98.21
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.2
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	98.19
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	98.19
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	98.17
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	98.15
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	98.14
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	98.13
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.11
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	98.1
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	98.06
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	98.06
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	98.05
PRK12335	287	tellurite resistance protein TehB; Provisional	98.05
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	98.05
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.05
PLN03075	296	nicotianamine synthase; Provisional	98.04
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.01
PLN02672	1082	methionine S-methyltransferase	98.01
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	98.0
PLN02589	247	caffeoyl-CoA O-methyltransferase	98.0
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	97.99
PLN02585	315	magnesium protoporphyrin IX methyltransferase	97.99
TIGR00740	239	methyltransferase, putative. A simple BLAST search	97.98
PRK10258	251	biotin biosynthesis protein BioC; Provisional	97.96
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	97.96
PRK04457	262	spermidine synthase; Provisional	97.94
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	97.93
smart00359	77	PUA Putative RNA-binding Domain in PseudoUridine s	97.93
PRK06202	232	hypothetical protein; Provisional	97.93
KOG2904	328	consensus Predicted methyltransferase [General fun	97.91
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	97.89
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.88
COG5270	202	PUA domain (predicted RNA-binding domain) [Transla	97.87
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	97.85
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	97.82
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	97.81
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	97.81
PLN02336	475	phosphoethanolamine N-methyltransferase	97.79
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	97.78
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	97.77
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	97.77
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	97.76
TIGR03438	301	probable methyltransferase. This model represents	97.76
PRK05785	226	hypothetical protein; Provisional	97.74
PRK00811	283	spermidine synthase; Provisional	97.72
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	97.72
PRK06922	677	hypothetical protein; Provisional	97.71
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	97.7
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	97.68
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	97.65
KOG2730	263	consensus Methylase [General function prediction o	97.64
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	97.62
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.61
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	97.6
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.59
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	97.59
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.59
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	97.58
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	97.58
TIGR00432	540	arcsn_tRNA_tgt tRNA-guanine transglycosylase, arch	97.58
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	97.57
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	97.56
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	97.55
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	97.55
PLN02336	475	phosphoethanolamine N-methyltransferase	97.54
PRK14901	434	16S rRNA methyltransferase B; Provisional	97.53
PLN02490	340	MPBQ/MSBQ methyltransferase	97.51
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.47
COG2521	287	Predicted archaeal methyltransferase [General func	97.45
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.44
TIGR00452	314	methyltransferase, putative. Known examples to dat	97.41
PRK14903	431	16S rRNA methyltransferase B; Provisional	97.41
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	97.41
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	97.39
KOG2523	181	consensus Predicted RNA-binding protein with PUA d	97.38
KOG2671	421	consensus Putative RNA methylase [Replication, rec	97.37
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	97.37
PLN02366	308	spermidine synthase	97.37
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	97.36
PRK03612	521	spermidine synthase; Provisional	97.35
PRK10901	427	16S rRNA methyltransferase B; Provisional	97.33
PRK01581	374	speE spermidine synthase; Validated	97.3
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	97.3
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	97.25
KOG1271	227	consensus Methyltransferases [General function pre	97.25
PRK05429	372	gamma-glutamyl kinase; Provisional	97.24
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	97.22
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.18
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.15
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	97.14
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	97.11
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	97.09
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	97.01
COG4076	252	Predicted RNA methylase [General function predicti	97.01
KOG2782	303	consensus Putative SAM dependent methyltransferase	97.0
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	96.97
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	96.9
PRK04270	300	H/ACA RNA-protein complex component Cbf5p; Reviewe	96.88
PRK14902	444	16S rRNA methyltransferase B; Provisional	96.88
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	96.87
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	96.86
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	96.86
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	96.83
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	96.79
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	96.79
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	96.78
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	96.78
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	96.78
PRK13255	218	thiopurine S-methyltransferase; Reviewed	96.74
TIGR01027	363	proB glutamate 5-kinase. Bacterial ProB proteins h	96.69
COG1370	155	Prefoldin, molecular chaperone implicated in de no	96.69
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	96.69
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	96.68
TIGR00425	322	CBF5 rRNA pseudouridine synthase, putative. This f	96.67
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	96.63
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	96.62
KOG2899	288	consensus Predicted methyltransferase [General fun	96.51
COG0286	489	HsdM Type I restriction-modification system methyl	96.47
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	96.47
PF02005	377	TRM: N2,N2-dimethylguanosine tRNA methyltransferas	96.42
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	96.41
COG1549	519	Queuine tRNA-ribosyltransferases, contain PUA doma	96.38
PF13679	141	Methyltransf_32: Methyltransferase domain	96.36
PLN02823	336	spermine synthase	96.29
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	96.12
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	96.03
PRK14904	445	16S rRNA methyltransferase B; Provisional	95.87
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.86
PRK04148	134	hypothetical protein; Provisional	95.8
COG3897	218	Predicted methyltransferase [General function pred	95.77
COG1867	380	TRM1 N2,N2-dimethylguanosine tRNA methyltransferas	95.68
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	95.68
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	95.54
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	95.36
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	95.25
KOG2078	495	consensus tRNA modification enzyme [RNA processing	95.24
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	95.21
KOG1098	780	consensus Putative SAM-dependent rRNA methyltransf	95.15
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	95.06
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	94.93
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	94.82
PRK13256	226	thiopurine S-methyltransferase; Reviewed	94.82
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	94.25
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	94.13
COG1568	354	Predicted methyltransferases [General function pre	94.09
PRK13402	368	gamma-glutamyl kinase; Provisional	93.96
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	93.96
KOG4300	252	consensus Predicted methyltransferase [General fun	93.91
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	93.72
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	93.34
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	93.28
TIGR00497	501	hsdM type I restriction system adenine methylase (	92.88
TIGR00675	315	dcm DNA-methyltransferase (dcm). All proteins in t	92.71
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	92.67
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	92.6
PRK11524	284	putative methyltransferase; Provisional	92.6
KOG1253	525	consensus tRNA methyltransferase [Translation, rib	92.39
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	92.19
KOG1099	294	consensus SAM-dependent methyltransferase/cell div	92.08
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	92.01
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	91.84
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	91.76
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	91.75
KOG1227	351	consensus Putative methyltransferase [General func	91.44
KOG3010	261	consensus Methyltransferase [General function pred	91.07
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	90.36
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	90.29
PHA01634	156	hypothetical protein	89.67
COG4976	287	Predicted methyltransferase (contains TPR repeat)	89.54
COG0270	328	Dcm Site-specific DNA methylase [DNA replication,	89.34
COG0263	369	ProB Glutamate 5-kinase [Amino acid transport and	88.21
PRK10458	467	DNA cytosine methylase; Provisional	87.5
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	87.42
PRK13699	227	putative methylase; Provisional	86.81
KOG2361	264	consensus Predicted methyltransferase [General fun	86.56
PF04989	206	CmcI: Cephalosporin hydroxylase; InterPro: IPR0070	85.18
PLN02232	160	ubiquinone biosynthesis methyltransferase	85.17
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	84.59
COG4262	508	Predicted spermidine synthase with an N-terminal m	84.41
COG2933	358	Predicted SAM-dependent methyltransferase [General	83.95
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	82.11
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	81.4

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=100.00  E-value=2.1e-50  Score=404.00  Aligned_cols=349  Identities=22%  Similarity=0.263  Sum_probs=281.7

Q ss_pred             cCCCcccccccccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCccccccc
Q 014571            3 LSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSV   82 (422)
Q Consensus         3 ~~~~~~~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~   82 (422)
                      .+++ +|+|.++|++++++|+...|+.++++.+...+ .+-.+.++|.++-+...+..++.+....++.    ....+++
T Consensus         7 ~~e~-~~~~~~~~~~e~~~~~~d~~~~~d~~~~~~~~-~e~~~~~l~~~~~~~~~~~~~e~~~~~~~~~----~~l~lp~   80 (460)
T KOG1122|consen    7 DSEE-EYLPGSGSNPEVEDYFTDDFRDDDLDDIDLKL-IERKSRKLRKRESLEASEAEEELNTNTFEEG----DPLLLPT   80 (460)
T ss_pred             cccc-ccCcCCCCCccchhhhccccCccchhhhhhhh-hhhHHHHHHHhhcccchhhHHHHhhcccccc----ccccCcc
Confidence            5667 99999999999999999999999999999999 9999999999998887777776665332211    0112222


Q ss_pred             cc-ccCCCccccccCCCCCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEE
Q 014571           83 KG-RLQNGTISESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVA  161 (422)
Q Consensus        83 ~~-~~~~~~~~~~~~~~l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~  161 (422)
                      .+ .....+++..++..+..+-++++-|+++-     .....+  ++++.|+.++++|++.|+||++.+.+.++.++.+.
T Consensus        81 ~~~~~~~~~~P~L~~v~~~~~~~~~~l~dfk~-----l~~~~~--~~~~~~~~l~~~~~~~y~y~~~l~~~~~e~~~~~e  153 (460)
T KOG1122|consen   81 LEEEEEKDSVPDLQNVDLRIVELVPVLGDFKN-----LKEPGR--LRSEYCGQLKKDGAHYYAYGVFLAEKLMELFPLVE  153 (460)
T ss_pred             cccccccccCCccchhhHHhhhhhhhhcchhc-----cccccc--chhhHHHHHHhcccceechHHHHHHHhcccccHHH
Confidence            22 11222344455555566667788888862     112223  99999999999999999999999999999999888


Q ss_pred             EeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEEEccCccCHHHHh---------cccC----cceeecccc
Q 014571          162 VSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIF---------RASE----GIAVDMHNR  228 (422)
Q Consensus       162 v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~---------~~~~----GiaV~~~~~  228 (422)
                      +++++++.+.                         +.++.+|.|+.+.-+.+..         ..+-    ++.+.+..+
T Consensus       154 v~~~~e~~~~-------------------------~rp~tir~ntlk~~rrd~~~~L~nrgv~~~pl~~ws~vgl~v~~s  208 (460)
T KOG1122|consen  154 VYEFLEANEK-------------------------PRPVTIRTNTLKTRRRDLAVELSNRGVNLDPLGKWSKVGLVVFDS  208 (460)
T ss_pred             HHHHHHhhcC-------------------------CCCeeEEecccchhhhhHHHHHHhcccCcccccccccceEEEecC
Confidence            8877766544                         3567788887665433332         2222    366777788


Q ss_pred             ccCCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH
Q 014571          229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE  308 (422)
Q Consensus       229 ~~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r  308 (422)
                      ++.+|.+.+|++|++.+|+++|++++++|+||||+|||||||||||||+|||++|+++|.|+|+|.+.+|++.++.|+.|
T Consensus       209 ~vpigat~e~lag~~~LQ~~sS~Lpv~aL~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~r  288 (460)
T KOG1122|consen  209 VVPIGATPEYLAGHYMLQNASSFLPVMALDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHR  288 (460)
T ss_pred             ccccCCchhhcccceeeccCcccceeeecCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHH
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHH
Q 014571          309 MGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQ  388 (422)
Q Consensus       309 ~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q  388 (422)
                      +|++|..+..+|+++++..             .+.+.||+||+||||||+|.   +.|.+...  |..+..++.+++.+|
T Consensus       289 lGv~ntiv~n~D~~ef~~~-------------~~~~~fDRVLLDAPCSGtgv---i~K~~~vk--t~k~~~di~~~~~LQ  350 (460)
T KOG1122|consen  289 LGVTNTIVSNYDGREFPEK-------------EFPGSFDRVLLDAPCSGTGV---ISKDQSVK--TNKTVKDILRYAHLQ  350 (460)
T ss_pred             hCCCceEEEccCccccccc-------------ccCcccceeeecCCCCCCcc---cccccccc--cchhHHHHHHhHHHH
Confidence            9999999999999876421             23457999999999999999   88888874  555555568999999


Q ss_pred             HHHHHHhcc-ceeccEEEeh
Q 014571          389 EEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       389 ~~IL~~a~~-lr~~~~~~~t  407 (422)
                      +++|.+|+. ++.||+|||+
T Consensus       351 r~LllsAi~lv~~GGvLVYS  370 (460)
T KOG1122|consen  351 RELLLSAIDLVKAGGVLVYS  370 (460)
T ss_pred             HHHHHHHHhhccCCcEEEEE
Confidence            999999977 7999999994

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.3e-43  Score=354.39  Aligned_cols=234  Identities=29%  Similarity=0.385  Sum_probs=193.2

Q ss_pred             cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571           13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS   92 (422)
Q Consensus        13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (422)
                      ..+.+-+.+++.+.||.+.++.+++++.+||. .++||||++++++++.+.|...         +             ..
T Consensus        52 ~~~p~w~~~~~~~~~~~~~~~~~~~a~~~~~~-~~~Rvn~lk~~~~~~~~~l~~~---------~-------------~~  108 (355)
T COG0144          52 YSHPEWLVEKLPDALGEDEAEAIAAALLRPPP-RSLRVNTLKADVEELLEALEEA---------G-------------VL  108 (355)
T ss_pred             ccCcHHHHHHHHHHcChHHHHHHHHHcCCCCC-eeEEEcCccCCHHHHHHHHhhc---------c-------------cc
Confidence            45777889999999998889999999999999 9999999999999999988854         2             00


Q ss_pred             cccCCCCCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCC
Q 014571           93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD  172 (422)
Q Consensus        93 ~~~~~~l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~  172 (422)
                      ....+..++++.+                                                                   
T Consensus       109 ~~~~~~~~~~~~i-------------------------------------------------------------------  121 (355)
T COG0144         109 DEKPWVLDEVLRI-------------------------------------------------------------------  121 (355)
T ss_pred             cccCCccccEEEe-------------------------------------------------------------------
Confidence            0000111112111                                                                   


Q ss_pred             CCchhhhhhhcccCCCCCCCcccCCCceEEEEccCccCHHHHhcccCcceeeccccccCCCCccccccceEEEeChhHHH
Q 014571          173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIV  252 (422)
Q Consensus       173 p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~~~~~GiaV~~~~~~~~~p~~~~~~~G~~~~Qd~~S~l  252 (422)
                                                                         +...++..+|.|   ++|+|++||.+||+
T Consensus       122 ---------------------------------------------------~~~~~~~~~~~~---~~G~~~vQd~sS~l  147 (355)
T COG0144         122 ---------------------------------------------------EASGPIGRLPEF---AEGLIYVQDEASQL  147 (355)
T ss_pred             ---------------------------------------------------cCCCCcccChhh---hceEEEEcCHHHHH
Confidence                                                               111222344434   69999999999999


Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEE-EEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV-VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V-~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      ++++|+|+||++||||||||||||+|||++|.+.|.+ +|+|++++|++.+++|++|+|+.|+.++..|++......   
T Consensus       148 ~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~---  224 (355)
T COG0144         148 PALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELL---  224 (355)
T ss_pred             HHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccc---
Confidence            9999999999999999999999999999999986665 999999999999999999999999999999998764321   


Q ss_pred             CCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                               ....+||+||+||||||+|+   +||||+.+|+|++...  .+++.+|++||++|+. ++.||+|||+
T Consensus       225 ---------~~~~~fD~iLlDaPCSg~G~---irr~Pd~~~~~~~~~i--~~l~~lQ~~iL~~a~~~lk~GG~LVYS  287 (355)
T COG0144         225 ---------PGGEKFDRILLDAPCSGTGV---IRRDPDVKWRRTPEDI--AELAKLQKEILAAALKLLKPGGVLVYS  287 (355)
T ss_pred             ---------cccCcCcEEEECCCCCCCcc---cccCccccccCCHHHH--HHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                     11236999999999999999   9999999988888765  6999999999999987 7999999993

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=100.00  E-value=2.8e-42  Score=359.73  Aligned_cols=236  Identities=22%  Similarity=0.238  Sum_probs=195.6

Q ss_pred             ccCHHHHHHHHHHhch-hhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571           14 RWNPQVEEYFIRAYGA-DHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS   92 (422)
Q Consensus        14 ~~~~~v~~~l~~~~~~-~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (422)
                      .+++.+.+++++.||. +.++++++++.+||. ++|||||+|++.+++++.|.+.         |             +.
T Consensus         3 ~lP~~fv~~~~~~lg~~ee~~~~l~a~~~~~~-~~lRvN~lK~~~~~~~~~L~~~---------g-------------~~   59 (470)
T PRK11933          3 YLPDAFLTQMREAMPSHLSMDDFIAACQRPLR-RSIRVNTLKISVADFLQLMAPY---------G-------------WT   59 (470)
T ss_pred             cChHHHHHHHHHHhCCcHHHHHHHHHcCCCCC-eEEEEcCCcCCHHHHHHHHHhC---------C-------------Cc
Confidence            3667788999999996 579999999999986 5899999999999999887643         2             22


Q ss_pred             cccCCCCCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCC
Q 014571           93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD  172 (422)
Q Consensus        93 ~~~~~~l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~  172 (422)
                      ..+.|+.++.+++...++..                                                            
T Consensus        60 ~~~~p~~~~g~~~~~~~~~~------------------------------------------------------------   79 (470)
T PRK11933         60 LTPIPWCEEGFWIERDDEDA------------------------------------------------------------   79 (470)
T ss_pred             eeECCCCCceEEEecCcccc------------------------------------------------------------
Confidence            33455555554432210000                                                            


Q ss_pred             CCchhhhhhhcccCCCCCCCcccCCCceEEEEccCccCHHHHhcccCcceeeccccccCCCCccccccceEEEeChhHHH
Q 014571          173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIV  252 (422)
Q Consensus       173 p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~~~~~GiaV~~~~~~~~~p~~~~~~~G~~~~Qd~~S~l  252 (422)
                                                                            .++..+|.|   .+|+||+||++||+
T Consensus        80 ------------------------------------------------------~~~~~~~~~---~~G~~yvQd~sS~l  102 (470)
T PRK11933         80 ------------------------------------------------------LPLGNTAEH---LSGLFYIQEASSML  102 (470)
T ss_pred             ------------------------------------------------------CCcccChHH---HCCcEEEECHHHHH
Confidence                                                                  001123333   58999999999999


Q ss_pred             HHHhc--CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          253 TAHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       253 v~~~L--~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      ++.+|  +|+||++||||||||||||+|||++|+++|.|+|+|++++|++.+++|++|+|+.||.++..|++.+...   
T Consensus       103 ~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~---  179 (470)
T PRK11933        103 PVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAA---  179 (470)
T ss_pred             HHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhh---
Confidence            99999  9999999999999999999999999999999999999999999999999999999999999999875321   


Q ss_pred             CCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                                 ....||+||+||||||+|+   +||+|+++++|+++..  .+|+.+|++||++|+. |+.+|.|||++
T Consensus       180 -----------~~~~fD~ILvDaPCSG~G~---~rk~p~~~~~~s~~~v--~~l~~lQ~~iL~~A~~~LkpGG~LVYST  242 (470)
T PRK11933        180 -----------LPETFDAILLDAPCSGEGT---VRKDPDALKNWSPESN--LEIAATQRELIESAFHALKPGGTLVYST  242 (470)
T ss_pred             -----------chhhcCeEEEcCCCCCCcc---cccCHHHhhhCCHHHH--HHHHHHHHHHHHHHHHHcCCCcEEEEEC
Confidence                       2356999999999999999   9999999999999876  6999999999999976 89999999943

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=100.00  E-value=8e-39  Score=315.32  Aligned_cols=195  Identities=28%  Similarity=0.324  Sum_probs=164.2

Q ss_pred             CcccCCCceEEEEccCccCHHHHhc--ccCcceeeccc--------------cccCCCCccccccceEEEeChhHHHHHH
Q 014571          192 PYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMHN--------------RIFQLPSFYDVLEGEIFLQNLPSIVTAH  255 (422)
Q Consensus       192 ~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~~--------------~~~~~p~~~~~~~G~~~~Qd~~S~lv~~  255 (422)
                      .++|+++++++|+|+.+++++++.+  ...|+.++...              ++..+|   .|++|++++||++||+++.
T Consensus         3 ~~~n~~~~~~iRvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~---~~~~G~~~vQd~sS~l~~~   79 (283)
T PF01189_consen    3 EANNCPPPVTIRVNTLKISREELLEELEEEGIQLEPIPRSPDALRVIGKSPYSICSLP---EFKNGLFYVQDESSQLVAL   79 (283)
T ss_dssp             HHCTS--GEEEEE-TTTSSHHHHHHHHHHTTHEEEEETSTTCEEEEEEECSSCGGGSH---HHHTTSEEEHHHHHHHHHH
T ss_pred             cccCCCCCeEEEECcCcCCHHHHHHHHhhcccceEEcccccchhccccccccchhhch---hhhCCcEEecccccccccc
Confidence            4567889999999999999999886  45566655332              222333   3579999999999999999


Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      +|+|++|++||||||||||||+|+|++|.++|+|+|+|++.+|+..++++++|+|+.++.++..|+++......      
T Consensus        80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~------  153 (283)
T PF01189_consen   80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKP------  153 (283)
T ss_dssp             HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHH------
T ss_pred             cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeecccccccccc------
Confidence            99999999999999999999999999999999999999999999999999999999999999999998743211      


Q ss_pred             cccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-c----eeccEEEeh
Q 014571          336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-L----RIQKVLVLT  407 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-l----r~~~~~~~t  407 (422)
                             ...||+||+||||||+|+   ++|+|+..+.|++...  .+++.+|++||++|+. +    +.+|.+||+
T Consensus       154 -------~~~fd~VlvDaPCSg~G~---i~r~p~~~~~~~~~~~--~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYs  218 (283)
T PF01189_consen  154 -------ESKFDRVLVDAPCSGLGT---IRRNPDIKWRRSPEDI--EKLAELQREILDNAAKLLNIDFKPGGRLVYS  218 (283)
T ss_dssp             -------TTTEEEEEEECSCCCGGG---TTTCTTHHHHE-TTHH--HHHHHHHHHHHHHHHHCEHHHBEEEEEEEEE
T ss_pred             -------ccccchhhcCCCccchhh---hhhccchhhccccccc--chHHHHHHHHHHHHHHhhcccccCCCeEEEE
Confidence                   235999999999999999   9999999877776554  6999999999999976 7    899999993

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=1.9e-36  Score=314.35  Aligned_cols=220  Identities=21%  Similarity=0.225  Sum_probs=187.3

Q ss_pred             ccccccCCCCchhhhhhhcccCC--CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeeccc-------------
Q 014571          165 AVEQPTLDGGWGLGITRGTVLQG--SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMHN-------------  227 (422)
Q Consensus       165 ~l~~~~~~p~W~~~~~r~~~~~~--~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~~-------------  227 (422)
                      .+.-.|++|.|+++.++..+...  .++.+++++++++++|+|..+.+++++.+  ...|+.++...             
T Consensus       127 ~l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~RvN~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~  206 (431)
T PRK14903        127 ELHLKYSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLPTMLRVNSLAITREEVIKILAEEGTEAVPGKHSPFSLIVRKLGV  206 (431)
T ss_pred             hhhhhhcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCCeeEEeeCCcCCHHHHHHHHHHCCCeeEECCCCCceEEEcCCCC
Confidence            45567899999999998887533  35677889999999999999999988765  34565544321             


Q ss_pred             cccCCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHH
Q 014571          228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA  307 (422)
Q Consensus       228 ~~~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~  307 (422)
                      ++..++   .|++|.+++||.+||+++.++++++|++|||+||||||||+|+++++++.|+|+|+|++++|++.+++|++
T Consensus       207 ~~~~~~---~~~~G~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~  283 (431)
T PRK14903        207 NMNDSR---VIKDGLATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAK  283 (431)
T ss_pred             CcccCh---HHHCCeEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH
Confidence            122233   35899999999999999999999999999999999999999999999888999999999999999999999


Q ss_pred             HhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHH
Q 014571          308 EMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMA  387 (422)
Q Consensus       308 r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~  387 (422)
                      ++|+++++++++|++.+...              ..+.||+||+||||||.|+   ++++|+.+++|++...  ..++.+
T Consensus       284 r~g~~~v~~~~~Da~~l~~~--------------~~~~fD~Vl~DaPCsg~G~---~~~~p~~~~~~~~~~~--~~l~~~  344 (431)
T PRK14903        284 RLKLSSIEIKIADAERLTEY--------------VQDTFDRILVDAPCTSLGT---ARNHPEVLRRVNKEDF--KKLSEI  344 (431)
T ss_pred             HcCCCeEEEEECchhhhhhh--------------hhccCCEEEECCCCCCCcc---ccCChHHHHhCCHHHH--HHHHHH
Confidence            99999999999999865310              1346999999999999999   9999999988887655  689999


Q ss_pred             HHHHHHHhcc-ceeccEEEe
Q 014571          388 QEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       388 Q~~IL~~a~~-lr~~~~~~~  406 (422)
                      |++||.+++. ++.||.||+
T Consensus       345 Q~~iL~~a~~~LkpGG~LvY  364 (431)
T PRK14903        345 QLRIVSQAWKLLEKGGILLY  364 (431)
T ss_pred             HHHHHHHHHHhcCCCCEEEE
Confidence            9999999977 799999999

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=5.5e-36  Score=311.29  Aligned_cols=222  Identities=27%  Similarity=0.282  Sum_probs=186.9

Q ss_pred             cccccCCCCchhhhhhhcccCC--CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcc------------eeecc-cc
Q 014571          166 VEQPTLDGGWGLGITRGTVLQG--SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGI------------AVDMH-NR  228 (422)
Q Consensus       166 l~~~~~~p~W~~~~~r~~~~~~--~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~Gi------------aV~~~-~~  228 (422)
                      +.-.||+|.|+++.++..+...  ..+..++|+++++++|+|+.+.+++++.+  ...|+            .+... ..
T Consensus       143 l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  222 (434)
T PRK14901        143 LAILHSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPSLDLRINPLRTSLEEVQAALAEAGITATPIPGLPQGLRLTGNPGS  222 (434)
T ss_pred             HHHHhCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHCCCceEECCCCCCeEEecCCCCc
Confidence            4456899999999999887633  35778889999999999999999988664  23343            33321 12


Q ss_pred             ccCCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH
Q 014571          229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE  308 (422)
Q Consensus       229 ~~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r  308 (422)
                      +..+|.|   ++|++++||.+||+++.+|++++|++|||+|||||+||+++++++++.|+|+|+|+++.|++.+++|+++
T Consensus       223 ~~~~~~f---~~g~~~~qd~~s~l~~~~l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r  299 (434)
T PRK14901        223 IRQLPGY---EEGWWTVQDRSAQLVAPLLDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQR  299 (434)
T ss_pred             cccChHH---hCCeEEEECHHHHHHHHHhCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHH
Confidence            4445544   7999999999999999999999999999999999999999999998889999999999999999999999


Q ss_pred             hCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHH
Q 014571          309 MGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQ  388 (422)
Q Consensus       309 ~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q  388 (422)
                      +|+++|+++++|++......   .        ...+.||.|++||||||+|+   ++++|+..|+|++...  .+++.+|
T Consensus       300 ~g~~~v~~~~~D~~~~~~~~---~--------~~~~~fD~Vl~DaPCSg~G~---~~r~p~~~~~~~~~~~--~~l~~~Q  363 (434)
T PRK14901        300 LGLKSIKILAADSRNLLELK---P--------QWRGYFDRILLDAPCSGLGT---LHRHPDARWRQTPEKI--QELAPLQ  363 (434)
T ss_pred             cCCCeEEEEeCChhhccccc---c--------cccccCCEEEEeCCCCcccc---cccCcchhhhCCHHHH--HHHHHHH
Confidence            99999999999998653210   0        01356999999999999999   9999999888777655  6899999


Q ss_pred             HHHHHHhcc-ceeccEEEe
Q 014571          389 EEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       389 ~~IL~~a~~-lr~~~~~~~  406 (422)
                      ++||++++. ++.+|.+|+
T Consensus       364 ~~iL~~a~~~lkpgG~lvy  382 (434)
T PRK14901        364 AELLESLAPLLKPGGTLVY  382 (434)
T ss_pred             HHHHHHHHHhcCCCCEEEE
Confidence            999999977 799999998

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=100.00  E-value=2.4e-34  Score=298.33  Aligned_cols=218  Identities=23%  Similarity=0.239  Sum_probs=177.9

Q ss_pred             cccccCCCCchhhhhhhcccCC-CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeecc------------cccc
Q 014571          166 VEQPTLDGGWGLGITRGTVLQG-SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMH------------NRIF  230 (422)
Q Consensus       166 l~~~~~~p~W~~~~~r~~~~~~-~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~------------~~~~  230 (422)
                      +.-.||+|.|+++.+...+... .++..++|+++++++|+|..+.+++++.+  ...|+.+...            ..+.
T Consensus       131 l~~~~s~P~wl~~~~~~~~~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~  210 (426)
T TIGR00563       131 LDARYLHPEWLVKRLQKAYPGQWQSICEANNQRPPMWLRINRTKHSRDEWLALLAEAGMKGFPHDLAPDAVRLETPAAVH  210 (426)
T ss_pred             HHHHcCCCHHHHHHHHHHhHHHHHHHHHHhCCCCCeEEEEcCCcCCHHHHHHHHHhcCCceeeCCCCCCeEEECCCCCcc
Confidence            4557999999998877776322 35667888999999999999999988765  3445443321            1233


Q ss_pred             CCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571          231 QLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG  310 (422)
Q Consensus       231 ~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g  310 (422)
                      .+|.   |++|++++||.+||+++..|+|++|++|||+|||||+||++++++++ .|+|+|+|++++|++.+++|++++|
T Consensus       211 ~~~~---~~~G~~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~-~~~v~a~D~~~~~l~~~~~n~~r~g  286 (426)
T TIGR00563       211 ALPG---FEEGWVTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAP-QAQVVALDIHEHRLKRVYENLKRLG  286 (426)
T ss_pred             cCch---hhCCeEEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHcC
Confidence            3333   47999999999999999999999999999999999999999999986 7899999999999999999999999


Q ss_pred             CcceEE--EecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHH
Q 014571          311 LKCITT--YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQ  388 (422)
Q Consensus       311 ~~nv~~--~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q  388 (422)
                      ++ +.+  ..+|+......             ...+.||.|++||||||+|+   +|++|+..|+|+++..  .+++.+|
T Consensus       287 ~~-~~v~~~~~d~~~~~~~-------------~~~~~fD~VllDaPcSg~G~---~~~~p~~~~~~~~~~~--~~l~~lQ  347 (426)
T TIGR00563       287 LT-IKAETKDGDGRGPSQW-------------AENEQFDRILLDAPCSATGV---IRRHPDIKWLRKPRDI--AELAELQ  347 (426)
T ss_pred             CC-eEEEEecccccccccc-------------ccccccCEEEEcCCCCCCcc---cccCcchhhcCCHHHH--HHHHHHH
Confidence            87 444  55565432110             01356999999999999999   9999999887776654  6999999


Q ss_pred             HHHHHHhcc-ceeccEEEe
Q 014571          389 EEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       389 ~~IL~~a~~-lr~~~~~~~  406 (422)
                      ++||++++. +|.+|.+|+
T Consensus       348 ~~lL~~a~~~LkpgG~lvy  366 (426)
T TIGR00563       348 SEILDAIWPLLKTGGTLVY  366 (426)
T ss_pred             HHHHHHHHHhcCCCcEEEE
Confidence            999999987 899999999

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=100.00  E-value=3.3e-33  Score=272.73  Aligned_cols=183  Identities=26%  Similarity=0.314  Sum_probs=156.2

Q ss_pred             EEEccCccCHHHHhc--ccCcceeeccc------------cccCCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEE
Q 014571          202 IGQGTAMMSRAGIFR--ASEGIAVDMHN------------RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILD  267 (422)
Q Consensus       202 Vrvg~a~msreel~~--~~~GiaV~~~~------------~~~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD  267 (422)
                      ||+|+.+.+++++.+  ...|+.++...            .+..+|.   |++|++++||.+||+++.+|++++|++|||
T Consensus         1 ~RvN~lk~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~G~~~~qd~~s~~~~~~l~~~~g~~VLD   77 (264)
T TIGR00446         1 IRVNTLKISVADLLQRLENRGVTLIPWCEEGFFEVNESPLPIGSTPE---YLSGLYYIQEASSMIPPLALEPDPPERVLD   77 (264)
T ss_pred             CeecCCCCCHHHHHHHHHhCCCceeecCCCceEEEeCCCCCcccChh---HhCCeEEEECHHHHHHHHHhCCCCcCEEEE
Confidence            578888889988765  34454333211            1333343   479999999999999999999999999999


Q ss_pred             ecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCC
Q 014571          268 MCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYIT  347 (422)
Q Consensus       268 ~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD  347 (422)
                      +|||||+||+++++++++.|.|+|+|+++.|++.+++|++++|+.+|+++..|++.+...               ...||
T Consensus        78 l~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~---------------~~~fD  142 (264)
T TIGR00446        78 MAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAA---------------VPKFD  142 (264)
T ss_pred             ECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhh---------------ccCCC
Confidence            999999999999999988899999999999999999999999999999999998764311               23499


Q ss_pred             ceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          348 SQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       348 ~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                      +||+||||||.|+   ++++|+.++.|+++..  .+++.+|++||++++. +|.+|.||++
T Consensus       143 ~Vl~D~Pcsg~G~---~~~~p~~~~~~~~~~~--~~l~~~q~~iL~~a~~~lkpgG~lvYs  198 (264)
T TIGR00446       143 AILLDAPCSGEGV---IRKDPSRKKNWSEEDI--QEISALQKELIDSAFDALKPGGVLVYS  198 (264)
T ss_pred             EEEEcCCCCCCcc---cccChhhhhcCCHHHH--HHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence            9999999999999   9999999988888755  6899999999999977 8999999994

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=100.00  E-value=5.9e-33  Score=289.45  Aligned_cols=218  Identities=21%  Similarity=0.194  Sum_probs=184.0

Q ss_pred             cccccCCCCchhhhhhhcccCC--CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeecc--------ccccCCC
Q 014571          166 VEQPTLDGGWGLGITRGTVLQG--SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMH--------NRIFQLP  233 (422)
Q Consensus       166 l~~~~~~p~W~~~~~r~~~~~~--~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~--------~~~~~~p  233 (422)
                      +...+++|.|+++.++..+...  .++.+++++++++++|+|..+.+++++.+  ...|+.+...        .......
T Consensus       145 l~~~~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  224 (445)
T PRK14904        145 LSLLYSHPEWLLERWIARYGEERTEAMLSYNNQAPLFGFRINRLKTTPEKFLAAPADASVTFEKSGLPNFFLSKDFSLFE  224 (445)
T ss_pred             HHHHhCCCHHHHHHHHHHhChHHHHHHHHHhCCCCCceeEeCCCCCCHHHHHHHHHhCCCceEEcCcceEEEeccccccC
Confidence            4556899999999999888643  35677888999999999999999988765  3345443322        1122220


Q ss_pred             CccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       234 ~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                        ..+.+|.+++||.+|++++.+|++++|++|||+|||||+||+++++.+++.++|+|+|+++.|++.++++++++|+.+
T Consensus       225 --~~~~~G~~~vqd~~s~l~~~~l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~  302 (445)
T PRK14904        225 --PFLKLGLVSVQNPTQALACLLLNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI  302 (445)
T ss_pred             --hHHhCcEEEEeCHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe
Confidence              235799999999999999999999999999999999999999999998878899999999999999999999999999


Q ss_pred             eEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHH
Q 014571          314 ITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINA  393 (422)
Q Consensus       314 v~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~  393 (422)
                      |+++++|+..+..                .+.||.|++||||||+|+   ++|+|+..|.|+++..  ..++.+|++||+
T Consensus       303 v~~~~~Da~~~~~----------------~~~fD~Vl~D~Pcsg~g~---~~r~p~~~~~~~~~~~--~~l~~~q~~iL~  361 (445)
T PRK14904        303 IETIEGDARSFSP----------------EEQPDAILLDAPCTGTGV---LGRRAELRWKLTPEKL--AELVGLQAELLD  361 (445)
T ss_pred             EEEEeCccccccc----------------CCCCCEEEEcCCCCCcch---hhcCcchhhcCCHHHH--HHHHHHHHHHHH
Confidence            9999999876421                246999999999999999   9999999888877554  689999999999


Q ss_pred             Hhcc-ceeccEEEe
Q 014571          394 LVVG-LRIQKVLVL  406 (422)
Q Consensus       394 ~a~~-lr~~~~~~~  406 (422)
                      +++. ++.+|.+|+
T Consensus       362 ~a~~~lkpgG~lvy  375 (445)
T PRK14904        362 HAASLLKPGGVLVY  375 (445)
T ss_pred             HHHHhcCCCcEEEE
Confidence            9977 799999999

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=99.97  E-value=5e-32  Score=281.12  Aligned_cols=221  Identities=23%  Similarity=0.247  Sum_probs=180.5

Q ss_pred             ccccccCCCCchhhhhhhcccCC-CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeecc------------ccc
Q 014571          165 AVEQPTLDGGWGLGITRGTVLQG-SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMH------------NRI  229 (422)
Q Consensus       165 ~l~~~~~~p~W~~~~~r~~~~~~-~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~------------~~~  229 (422)
                      ++...+++|.|+++.++..+... .++.+++|+++++++|+|..+.+++++.+  ...|+.++..            .++
T Consensus       136 ~~~~~~s~P~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  215 (427)
T PRK10901        136 DPVARYNHPSWLIKRLKKAYPEQWQAILAANNQRPPMWLRVNRRHHSRDAYLALLAEAGIEAFPHAVGPDAIRLETPVPV  215 (427)
T ss_pred             chHhHhcCCHHHHHHHHHHhHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceeecCCCCCeEEECCCCCc
Confidence            45667999999999998887422 34678889999999999999999987654  2344433321            123


Q ss_pred             cCCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh
Q 014571          230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM  309 (422)
Q Consensus       230 ~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~  309 (422)
                      ..+|.   |++|++++||.+||+++.+|++++|++|||+|||||+||+++++.+++ ++|+|+|+++.+++.+++|++++
T Consensus       216 ~~~~~---~~~G~~~iQd~~s~~~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~s~~~l~~~~~n~~~~  291 (427)
T PRK10901        216 HQLPG---FAEGWVSVQDAAAQLAATLLAPQNGERVLDACAAPGGKTAHILELAPQ-AQVVALDIDAQRLERVRENLQRL  291 (427)
T ss_pred             ccCch---hhCceEEEECHHHHHHHHHcCCCCCCEEEEeCCCCChHHHHHHHHcCC-CEEEEEeCCHHHHHHHHHHHHHc
Confidence            33333   479999999999999999999999999999999999999999998754 89999999999999999999999


Q ss_pred             CCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHH
Q 014571          310 GLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQE  389 (422)
Q Consensus       310 g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~  389 (422)
                      |+. ++++++|++......             ..+.||.|++||||||.|+   ++++|+..|.+++.  ++.++..+|+
T Consensus       292 g~~-~~~~~~D~~~~~~~~-------------~~~~fD~Vl~D~Pcs~~G~---~~~~p~~~~~~~~~--~l~~l~~~q~  352 (427)
T PRK10901        292 GLK-ATVIVGDARDPAQWW-------------DGQPFDRILLDAPCSATGV---IRRHPDIKWLRRPE--DIAALAALQS  352 (427)
T ss_pred             CCC-eEEEEcCcccchhhc-------------ccCCCCEEEECCCCCcccc---cccCccccccCCHH--HHHHHHHHHH
Confidence            986 688999987642110             1346999999999999999   99999987555554  3468899999


Q ss_pred             HHHHHhcc-ceeccEEEehh
Q 014571          390 EINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       390 ~IL~~a~~-lr~~~~~~~t~  408 (422)
                      +||+++.. |+.||.+++++
T Consensus       353 ~iL~~a~~~LkpGG~lvyst  372 (427)
T PRK10901        353 EILDALWPLLKPGGTLLYAT  372 (427)
T ss_pred             HHHHHHHHhcCCCCEEEEEe
Confidence            99999976 89999999843

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=99.97  E-value=8.6e-32  Score=280.61  Aligned_cols=221  Identities=27%  Similarity=0.269  Sum_probs=184.2

Q ss_pred             cccccCCCCchhhhhhhcccCC--CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeecc-----------cccc
Q 014571          166 VEQPTLDGGWGLGITRGTVLQG--SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMH-----------NRIF  230 (422)
Q Consensus       166 l~~~~~~p~W~~~~~r~~~~~~--~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~-----------~~~~  230 (422)
                      +.-.+++|.|+++.++..+...  .++.+++++++++++|+|..+.+++++.+  ...|+.++..           ..+.
T Consensus       143 ~~~~~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~~~Rvn~~k~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~  222 (444)
T PRK14902        143 LSIKYSHPVWLVKRWIDQYGEEKAEKILESLNEPPKASIRVNTLKISVEELIEKLEEEGYEVEESLLSPEALVIEKGNIA  222 (444)
T ss_pred             HHHHhCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCeEEEEcCCCCCHHHHHHHHHHcCceeEEcCCCCCeEEEeCCCcc
Confidence            4446899999999999887533  35677889999999999999998887654  2344443322           2233


Q ss_pred             CCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571          231 QLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG  310 (422)
Q Consensus       231 ~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g  310 (422)
                      .+|.|   ++|.+++||.+|++++.++++++|++|||+|||||+||+++++.+++.++|+|+|+++.+++.+++|++++|
T Consensus       223 ~~~~~---~~G~~~~qd~~s~lv~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g  299 (444)
T PRK14902        223 GTDLF---KDGLITIQDESSMLVAPALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLG  299 (444)
T ss_pred             cChHH---hCceEEEEChHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcC
Confidence            44444   799999999999999999999999999999999999999999998778999999999999999999999999


Q ss_pred             CcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHH
Q 014571          311 LKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEE  390 (422)
Q Consensus       311 ~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~  390 (422)
                      +.+|+++++|++.....              ..+.||.|++||||||.|+   ++++|+..+.|++...  ..++.+|++
T Consensus       300 ~~~v~~~~~D~~~~~~~--------------~~~~fD~Vl~D~Pcsg~G~---~~~~p~~~~~~~~~~~--~~l~~~q~~  360 (444)
T PRK14902        300 LTNIETKALDARKVHEK--------------FAEKFDKILVDAPCSGLGV---IRRKPDIKYNKTKEDI--ESLQEIQLE  360 (444)
T ss_pred             CCeEEEEeCCcccccch--------------hcccCCEEEEcCCCCCCee---eccCcchhhcCCHHHH--HHHHHHHHH
Confidence            98899999998764311              1256999999999999999   9999999877766544  689999999


Q ss_pred             HHHHhcc-ceeccEEEehh
Q 014571          391 INALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       391 IL~~a~~-lr~~~~~~~t~  408 (422)
                      ||+++.. ++.+|.+|+++
T Consensus       361 iL~~a~~~LkpGG~lvyst  379 (444)
T PRK14902        361 ILESVAQYLKKGGILVYST  379 (444)
T ss_pred             HHHHHHHHcCCCCEEEEEc
Confidence            9999977 89999999843

>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]

Probab=99.95  E-value=7e-29  Score=247.10  Aligned_cols=169  Identities=23%  Similarity=0.211  Sum_probs=141.0

Q ss_pred             cccCCCCcc--ccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCC---CcEEEEEcCChHHHHHH
Q 014571          228 RIFQLPSFY--DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD---EGEVVAVDRSHNKVMDI  302 (422)
Q Consensus       228 ~~~~~p~~~--~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~---~g~V~A~D~s~~rl~~l  302 (422)
                      ++.++|.|.  +..-|.+|.||.+||+++.+|+++||++||||||||||||.++.+.+..   .|.|+|+|.+.+|+..+
T Consensus       120 ~l~rf~~fl~~e~~vg~i~rqeavSmlPvL~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L  199 (375)
T KOG2198|consen  120 PLSRFHGFLKLETGVGNIYRQEAVSMLPVLALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNML  199 (375)
T ss_pred             chhhcchHhhhhcccccchhhhhhhccchhhcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHH
Confidence            344555542  3467899999999999999999999999999999999999999887743   47999999999999999


Q ss_pred             HHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCcc-ccccCccc
Q 014571          303 QKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKS-CKEKGRTC  381 (422)
Q Consensus       303 ~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~-w~~~~~~~  381 (422)
                      .+.++++.-.++.+..+|+..++...-.  .    ........||+||||+||||+|+   +|++++++.. |.....  
T Consensus       200 ~~q~~~l~~~~~~v~~~~~~~~p~~~~~--~----~~~~~~~~fDrVLvDVPCS~Dgt---~rk~~~i~~~~w~~~~~--  268 (375)
T KOG2198|consen  200 VHQLKRLPSPNLLVTNHDASLFPNIYLK--D----GNDKEQLKFDRVLVDVPCSGDGT---LRKNPNIWKEGWKTQRA--  268 (375)
T ss_pred             HHHHhccCCcceeeecccceeccccccc--c----CchhhhhhcceeEEecccCCCcc---cccCchHhhhhhhhhhc--
Confidence            9999888888899999998876543210  0    00113567999999999999999   9999999988 887663  


Q ss_pred             chhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          382 GECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       382 ~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                      ..++.+|.+||++... |+.||.+||+
T Consensus       269 ~~L~~LQ~~iL~rgl~lLk~GG~lVYS  295 (375)
T KOG2198|consen  269 LGLHALQLRILRRGLRLLKVGGRLVYS  295 (375)
T ss_pred             cCChHHHHHHHHHHHHHhcCCCEEEEe
Confidence            3799999999999966 8999999994

>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=4.7e-20  Score=184.26  Aligned_cols=195  Identities=23%  Similarity=0.290  Sum_probs=141.1

Q ss_pred             CCCceEEEEccCccCHHHHhc-------------ccCcceeeccc-cccCCC-C-----ccccccceEEEeChhHHHHHH
Q 014571          196 ERSGLYIGQGTAMMSRAGIFR-------------ASEGIAVDMHN-RIFQLP-S-----FYDVLEGEIFLQNLPSIVTAH  255 (422)
Q Consensus       196 ~~~~v~Vrvg~a~msreel~~-------------~~~GiaV~~~~-~~~~~p-~-----~~~~~~G~~~~Qd~~S~lv~~  255 (422)
                      ...+.|+|+|+.+-+.++.+.             .+.-+.+.... .+...| +     ...++.|.+.+||.+|+++++
T Consensus       128 ~~~pr~vRINtlk~~~~e~~~~L~~e~~~~~~~l~p~~~~~D~~~~~ll~~~~~n~i~~~~ly~~g~~ilqd~asclpA~  207 (413)
T KOG2360|consen  128 IPLPRYVRINTLKGTTDEALDYLDYEKWKMITELKPDEFYVDPHVENLIIFPPSNFIVEHELYKNGKFILQDKASCLPAH  207 (413)
T ss_pred             CCCceeEEeecccCchhhhhhhhhhhhhhhhhhcCCcceeccccchhhcccCCCcceeeccccccCceEEechhhcchhh
Confidence            457889999999876666553             01112222111 111111 1     123589999999999999999


Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      .|+|.+|..|+|+||+||.||+|+|..|.++|+|+|+|.++.|.+.+++.++..|..+++...+|+...+. +.      
T Consensus       208 ll~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~~~~~~~df~~t~~-~~------  280 (413)
T KOG2360|consen  208 LLDPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSIVESVEGDFLNTAT-PE------  280 (413)
T ss_pred             hcCCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCccccccccccCCCC-cc------
Confidence            99999999999999999999999999999999999999999999999999999999999998999876411 10      


Q ss_pred             cccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhccceeccEEEe
Q 014571          336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLVL  406 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~lr~~~~~~~  406 (422)
                           . ......||+|++|||+|+   ..|.-.....=.+....+..+..-|-.|+++|..+.--+-+++
T Consensus       281 -----~-~~~v~~iL~DpscSgSgm---~~r~~~~~~~e~~~~~rL~~L~~fq~~~~~hal~fp~~k~vvy  342 (413)
T KOG2360|consen  281 -----K-FRDVTYILVDPSCSGSGM---VSRQDEDPGAETESPERLENLQSFQIRILKHALTFPNLKRLVY  342 (413)
T ss_pred             -----c-ccceeEEEeCCCCCCCcc---ccceeeccCCCcccHHHHHHHHHHHHHHHHHHhcCCchhheee
Confidence                 1 123478999999999999   3332222211122223345677788899999988533344555

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=99.31  E-value=2e-12  Score=129.47  Aligned_cols=137  Identities=16%  Similarity=0.185  Sum_probs=99.5

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCC
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~  334 (422)
                      .+++..++.+|||+|||+|..+..+|+.   ..+|+|+|.++..++.+++|++..|++|++++++|+..+....      
T Consensus       167 ~~l~~~~~~~VLDl~cG~G~~sl~la~~---~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~------  237 (315)
T PRK03522        167 DWVRELPPRSMWDLFCGVGGFGLHCATP---GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ------  237 (315)
T ss_pred             HHHHhcCCCEEEEccCCCCHHHHHHHhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc------
Confidence            3444456799999999999999999985   3689999999999999999999999989999999998764210      


Q ss_pred             ccccCCCCCCCCCceeecCCccccCch--hhhhhCCCCCccccccCcccchhHH--HHHHHHHHhccceeccEEEe----
Q 014571          335 PNMCNSKDNNYITSQTSDSMKLHKEVP--SIAAEGLNGDKSCKEKGRTCGECGM--AQEEINALVVGLRIQKVLVL----  406 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDaPCSg~G~l--~~lrr~p~~~~~w~~~~~~~~~l~~--~Q~~IL~~a~~lr~~~~~~~----  406 (422)
                              .+.||.|++|||++|.+..  ..+.+       ..+....+.+|.+  ++|++ +.-.++++..+-.+    
T Consensus       238 --------~~~~D~Vv~dPPr~G~~~~~~~~l~~-------~~~~~ivyvsc~p~t~~rd~-~~l~~y~~~~~~~~DmFP  301 (315)
T PRK03522        238 --------GEVPDLVLVNPPRRGIGKELCDYLSQ-------MAPRFILYSSCNAQTMAKDL-AHLPGYRIERVQLFDMFP  301 (315)
T ss_pred             --------CCCCeEEEECCCCCCccHHHHHHHHH-------cCCCeEEEEECCcccchhHH-hhccCcEEEEEEEeccCC
Confidence                    2358999999999986431  22222       1222222333332  33332 22358999888888    


Q ss_pred             -hhhHHHHHhh
Q 014571          407 -TALIESFLML  416 (422)
Q Consensus       407 -t~~~~~~~~~  416 (422)
                       |.|+|++..|
T Consensus       302 ~T~HvE~v~~l  312 (315)
T PRK03522        302 HTAHYEVLTLL  312 (315)
T ss_pred             CCCeEEEEEEE
Confidence             9999997543

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=99.28  E-value=1.4e-11  Score=128.21  Aligned_cols=140  Identities=21%  Similarity=0.185  Sum_probs=106.2

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      .+..+++..++++|||+.||-|+.|+++|..   ..+|+|+|+++..++.+++|++..|+.|+.+..+|+.++.....  
T Consensus       284 ~a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~---~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~--  358 (432)
T COG2265         284 TALEWLELAGGERVLDLYCGVGTFGLPLAKR---VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW--  358 (432)
T ss_pred             HHHHHHhhcCCCEEEEeccCCChhhhhhccc---CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc--
Confidence            3556677889999999999999999999965   47999999999999999999999999999999999998764321  


Q ss_pred             CCCccccCCCCCCCCCceeecCCccccC-chhhhhhCCCCCccccccCcccchhHH--HHHHHHHHh-ccceeccEEEe-
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHKE-VPSIAAEGLNGDKSCKEKGRTCGECGM--AQEEINALV-VGLRIQKVLVL-  406 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G-~l~~lrr~p~~~~~w~~~~~~~~~l~~--~Q~~IL~~a-~~lr~~~~~~~-  406 (422)
                                ....||.|++|||++|.+ .   +-+.-   .+..+....+-+|.+  +.|++-.-+ .++++.++-.. 
T Consensus       359 ----------~~~~~d~VvvDPPR~G~~~~---~lk~l---~~~~p~~IvYVSCNP~TlaRDl~~L~~~gy~i~~v~~~D  422 (432)
T COG2265         359 ----------EGYKPDVVVVDPPRAGADRE---VLKQL---AKLKPKRIVYVSCNPATLARDLAILASTGYEIERVQPFD  422 (432)
T ss_pred             ----------ccCCCCEEEECCCCCCCCHH---HHHHH---HhcCCCcEEEEeCCHHHHHHHHHHHHhCCeEEEEEEEec
Confidence                      134689999999999988 3   22211   123444444556654  444444334 45667777776 


Q ss_pred             ----hhhHHH
Q 014571          407 ----TALIES  412 (422)
Q Consensus       407 ----t~~~~~  412 (422)
                          |+|+|+
T Consensus       423 mFP~T~HvE~  432 (432)
T COG2265         423 MFPHTHHVEA  432 (432)
T ss_pred             cCCCccccCC
Confidence                999996

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=99.27  E-value=8.4e-12  Score=130.62  Aligned_cols=142  Identities=23%  Similarity=0.253  Sum_probs=102.9

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      ...+++.+|++|||+|||+|..|..+|...   .+|+|+|+|+.+++.+++|++..|++|++++++|+.......   +.
T Consensus       290 l~~l~~~~~~~VLDlgcGtG~~sl~la~~~---~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~l~~~---~~  363 (443)
T PRK13168        290 LEWLDPQPGDRVLDLFCGLGNFTLPLARQA---AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEEDFTDQ---PW  363 (443)
T ss_pred             HHHhcCCCCCEEEEEeccCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHhhhhh---hh
Confidence            345567899999999999999999999873   689999999999999999999999999999999997643110   00


Q ss_pred             CccccCCCCCCCCCceeecCCccccCch-hhhhhCCCCCccccccCcccchhHH--HHHHHHHH-hccceeccEEEe---
Q 014571          334 EPNMCNSKDNNYITSQTSDSMKLHKEVP-SIAAEGLNGDKSCKEKGRTCGECGM--AQEEINAL-VVGLRIQKVLVL---  406 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~l-~~lrr~p~~~~~w~~~~~~~~~l~~--~Q~~IL~~-a~~lr~~~~~~~---  406 (422)
                              ....||.|++|||++|.... ..+.+       ..++..-+.+|.+  +-|++-.- ..|+|+..+-.+   
T Consensus       364 --------~~~~fD~Vi~dPPr~g~~~~~~~l~~-------~~~~~ivyvSCnp~tlaRDl~~L~~~gY~l~~i~~~DmF  428 (443)
T PRK13168        364 --------ALGGFDKVLLDPPRAGAAEVMQALAK-------LGPKRIVYVSCNPATLARDAGVLVEAGYRLKRAGMLDMF  428 (443)
T ss_pred             --------hcCCCCEEEECcCCcChHHHHHHHHh-------cCCCeEEEEEeChHHhhccHHHHhhCCcEEEEEEEeccC
Confidence                    12459999999999986542 22222       1233333333332  33333333 257999888888   


Q ss_pred             --hhhHHHHHhh
Q 014571          407 --TALIESFLML  416 (422)
Q Consensus       407 --t~~~~~~~~~  416 (422)
                        |.|+|++-.|
T Consensus       429 P~T~HvE~v~lL  440 (443)
T PRK13168        429 PHTGHVESMALF  440 (443)
T ss_pred             CCCCcEEEEEEE
Confidence              9999987543

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=99.23  E-value=1.2e-11  Score=125.98  Aligned_cols=150  Identities=17%  Similarity=0.183  Sum_probs=91.5

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      +..++++.++ .|||++||.|+.|+.+|...   .+|+|+|.++..++.+++|++..|++|++++.+++.++........
T Consensus       189 ~~~~l~~~~~-~vlDlycG~G~fsl~la~~~---~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~~~~~~~~~~~r  264 (352)
T PF05958_consen  189 ALEWLDLSKG-DVLDLYCGVGTFSLPLAKKA---KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDAEDFAKALAKAR  264 (352)
T ss_dssp             HHHHCTT-TT-EEEEES-TTTCCHHHHHCCS---SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--SHHCCCHHCCS-
T ss_pred             HHHHhhcCCC-cEEEEeecCCHHHHHHHhhC---CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeeccchhHHHHhhH
Confidence            4566777766 89999999999999999874   6899999999999999999999999999999988876533221100


Q ss_pred             CCcc-ccCCCCCCCCCceeecCCccccCc--hhhhhhCCCCCccccccCcccchhHH--HHHHHHHHhccceeccEEEe-
Q 014571          333 DEPN-MCNSKDNNYITSQTSDSMKLHKEV--PSIAAEGLNGDKSCKEKGRTCGECGM--AQEEINALVVGLRIQKVLVL-  406 (422)
Q Consensus       333 ~~~~-~~~~~~~~~FD~VLvDaPCSg~G~--l~~lrr~p~~~~~w~~~~~~~~~l~~--~Q~~IL~~a~~lr~~~~~~~-  406 (422)
                      .... ..-......||.|++|||++|.+.  ++.+. .+        +..-+.+|.+  +-|++-.-..++++..+-.+ 
T Consensus       265 ~~~~~~~~~~~~~~~d~vilDPPR~G~~~~~~~~~~-~~--------~~ivYvSCnP~tlaRDl~~L~~~y~~~~v~~~D  335 (352)
T PF05958_consen  265 EFNRLKGIDLKSFKFDAVILDPPRAGLDEKVIELIK-KL--------KRIVYVSCNPATLARDLKILKEGYKLEKVQPVD  335 (352)
T ss_dssp             GGTTGGGS-GGCTTESEEEE---TT-SCHHHHHHHH-HS--------SEEEEEES-HHHHHHHHHHHHCCEEEEEEEEE-
T ss_pred             HHHhhhhhhhhhcCCCEEEEcCCCCCchHHHHHHHh-cC--------CeEEEEECCHHHHHHHHHHHhhcCEEEEEEEee
Confidence            0000 000001235899999999999875  23232 22        2333455554  33333222348999998888 


Q ss_pred             ----hhhHHHHHh
Q 014571          407 ----TALIESFLM  415 (422)
Q Consensus       407 ----t~~~~~~~~  415 (422)
                          |.|+|++..
T Consensus       336 mFP~T~HvE~v~l  348 (352)
T PF05958_consen  336 MFPQTHHVETVAL  348 (352)
T ss_dssp             SSTTSS--EEEEE
T ss_pred             cCCCCCcEEEEEE
Confidence                999998654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=99.19  E-value=1.9e-10  Score=106.38  Aligned_cols=74  Identities=30%  Similarity=0.444  Sum_probs=68.9

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      .++...|.|+||++++|++||+|+-|..+| ++++.++|+|+|.++++++.+++|++++|++|++++.+|+-+..
T Consensus        24 al~ls~L~~~~g~~l~DIGaGtGsi~iE~a-~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L   97 (187)
T COG2242          24 ALTLSKLRPRPGDRLWDIGAGTGSITIEWA-LAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEAL   97 (187)
T ss_pred             HHHHHhhCCCCCCEEEEeCCCccHHHHHHH-HhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhh
Confidence            456678899999999999999999999999 77889999999999999999999999999999999999987654

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.15  E-value=1.4e-10  Score=111.67  Aligned_cols=85  Identities=26%  Similarity=0.268  Sum_probs=62.5

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      .++..+.+++|++|||+|||+|.-|..++..+++.++|+++|+|+.|++.+++++++.+..+|+++++|+..++..    
T Consensus        38 ~~~~~~~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~----  113 (233)
T PF01209_consen   38 KLIKLLGLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFP----  113 (233)
T ss_dssp             HHHHHHT--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-----
T ss_pred             HHHhccCCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCC----
Confidence            4566678999999999999999999999999888899999999999999999999999988999999999987642    


Q ss_pred             CCCccccCCCCCCCCCceee
Q 014571          332 NDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLv  351 (422)
                                 .+.||.|.+
T Consensus       114 -----------d~sfD~v~~  122 (233)
T PF01209_consen  114 -----------DNSFDAVTC  122 (233)
T ss_dssp             -----------TT-EEEEEE
T ss_pred             -----------CCceeEEEH
Confidence                       356898887

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=99.15  E-value=7e-11  Score=121.21  Aligned_cols=135  Identities=16%  Similarity=0.175  Sum_probs=99.5

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      ++..++.+|||++||.|..++.+|..   ..+|+|+|+++..++.+++|++..|++|++++++|+.++....        
T Consensus       229 l~~~~~~~vLDL~cG~G~~~l~la~~---~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~--------  297 (374)
T TIGR02085       229 VREIPVTQMWDLFCGVGGFGLHCAGP---DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ--------  297 (374)
T ss_pred             HHhcCCCEEEEccCCccHHHHHHhhc---CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc--------
Confidence            44456789999999999999999964   3689999999999999999999999999999999998754210        


Q ss_pred             ccCCCCCCCCCceeecCCccccCc--hhhhhhCCCCCccccccCcccchhHH--HHHHHHHHhccceeccEEEe-----h
Q 014571          337 MCNSKDNNYITSQTSDSMKLHKEV--PSIAAEGLNGDKSCKEKGRTCGECGM--AQEEINALVVGLRIQKVLVL-----T  407 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPCSg~G~--l~~lrr~p~~~~~w~~~~~~~~~l~~--~Q~~IL~~a~~lr~~~~~~~-----t  407 (422)
                            ...||.|++|||..|..-  ++.+.+       ..++..-+.+|.+  +.|++-.- .|+++..+-.+     |
T Consensus       298 ------~~~~D~vi~DPPr~G~~~~~l~~l~~-------~~p~~ivyvsc~p~TlaRDl~~L-~gy~l~~~~~~DmFPqT  363 (374)
T TIGR02085       298 ------MSAPELVLVNPPRRGIGKELCDYLSQ-------MAPKFILYSSCNAQTMAKDIAEL-SGYQIERVQLFDMFPHT  363 (374)
T ss_pred             ------CCCCCEEEECCCCCCCcHHHHHHHHh-------cCCCeEEEEEeCHHHHHHHHHHh-cCceEEEEEEeccCCCC
Confidence                  124899999999987532  122222       2344444445443  33333332 68999888887     9


Q ss_pred             hhHHHHHhh
Q 014571          408 ALIESFLML  416 (422)
Q Consensus       408 ~~~~~~~~~  416 (422)
                      .|+|++-.|
T Consensus       364 ~HvE~v~ll  372 (374)
T TIGR02085       364 SHYEVLTLL  372 (374)
T ss_pred             CcEEEEEEE
Confidence            999997543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=99.12  E-value=2.1e-10  Score=117.26  Aligned_cols=143  Identities=15%  Similarity=0.160  Sum_probs=97.0

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCC
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSK  341 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~  341 (422)
                      +.+|||+|||.|+.|+.++...   .+|+|+|.++..++.+++|++..|++|++++.+|+.++..........-......
T Consensus       207 ~~~vLDl~~G~G~~sl~la~~~---~~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~~~~~~  283 (362)
T PRK05031        207 KGDLLELYCGNGNFTLALARNF---RRVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEEFTQAMNGVREFNRLKGID  283 (362)
T ss_pred             CCeEEEEeccccHHHHHHHhhC---CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhccccccccccc
Confidence            3579999999999999888763   4899999999999999999999999999999999987653211000000000000


Q ss_pred             -CCCCCCceeecCCccccCc--hhhhhhCCCCCccccccCcccchhHH--HHHHHHHHhccceeccEEEe-----hhhHH
Q 014571          342 -DNNYITSQTSDSMKLHKEV--PSIAAEGLNGDKSCKEKGRTCGECGM--AQEEINALVVGLRIQKVLVL-----TALIE  411 (422)
Q Consensus       342 -~~~~FD~VLvDaPCSg~G~--l~~lrr~p~~~~~w~~~~~~~~~l~~--~Q~~IL~~a~~lr~~~~~~~-----t~~~~  411 (422)
                       ....||.|++|||.+|...  ++.+.+ |+        ..-+.+|.+  +.|++-.-..++++.++-.+     |.|||
T Consensus       284 ~~~~~~D~v~lDPPR~G~~~~~l~~l~~-~~--------~ivyvSC~p~tlarDl~~L~~gY~l~~v~~~DmFPqT~HvE  354 (362)
T PRK05031        284 LKSYNFSTIFVDPPRAGLDDETLKLVQA-YE--------RILYISCNPETLCENLETLSQTHKVERFALFDQFPYTHHME  354 (362)
T ss_pred             ccCCCCCEEEECCCCCCCcHHHHHHHHc-cC--------CEEEEEeCHHHHHHHHHHHcCCcEEEEEEEcccCCCCCcEE
Confidence             0125899999999988532  344544 32        222334433  23322222238999988888     99999


Q ss_pred             HHHhh
Q 014571          412 SFLML  416 (422)
Q Consensus       412 ~~~~~  416 (422)
                      ++..|
T Consensus       355 ~v~lL  359 (362)
T PRK05031        355 CGVLL  359 (362)
T ss_pred             EEEEE
Confidence            87543

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=99.11  E-value=2.3e-10  Score=119.26  Aligned_cols=137  Identities=18%  Similarity=0.089  Sum_probs=96.8

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      ...++++++++|||+|||+|..++.+|...   .+|+|+|+++.+++.+++|++..|+.|++++.+|+........   .
T Consensus       285 ~~~l~~~~~~~vLDl~cG~G~~sl~la~~~---~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l~~~~---~  358 (431)
T TIGR00479       285 LEALELQGEELVVDAYCGVGTFTLPLAKQA---KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVLPKQP---W  358 (431)
T ss_pred             HHHhccCCCCEEEEcCCCcCHHHHHHHHhC---CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHHHHHH---h
Confidence            445567888999999999999999999863   5899999999999999999999999999999999976432110   0


Q ss_pred             CccccCCCCCCCCCceeecCCccccCc--hhhhhhCCCCCccccccCcccchhHH-HHHHHHHHh--ccceeccEEEe--
Q 014571          334 EPNMCNSKDNNYITSQTSDSMKLHKEV--PSIAAEGLNGDKSCKEKGRTCGECGM-AQEEINALV--VGLRIQKVLVL--  406 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~--l~~lrr~p~~~~~w~~~~~~~~~l~~-~Q~~IL~~a--~~lr~~~~~~~--  406 (422)
                              ....||.|++|||++|...  ++.+.+       ..++...+.+|.+ ++.+-++..  .|+++..+..+  
T Consensus       359 --------~~~~~D~vi~dPPr~G~~~~~l~~l~~-------l~~~~ivyvsc~p~tlard~~~l~~~gy~~~~~~~~Dm  423 (431)
T TIGR00479       359 --------AGQIPDVLLLDPPRKGCAAEVLRTIIE-------LKPERIVYVSCNPATLARDLEFLCKEGYGITWVQPVDM  423 (431)
T ss_pred             --------cCCCCCEEEECcCCCCCCHHHHHHHHh-------cCCCEEEEEcCCHHHHHHHHHHHHHCCeeEEEEEEecc
Confidence                    1245899999999998432  222332       1222222223332 332222222  46888888777  


Q ss_pred             ---hhhHH
Q 014571          407 ---TALIE  411 (422)
Q Consensus       407 ---t~~~~  411 (422)
                         |.|+|
T Consensus       424 FP~T~HvE  431 (431)
T TIGR00479       424 FPHTAHVE  431 (431)
T ss_pred             CCCCCCCC
Confidence               99987

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=99.10  E-value=8.2e-10  Score=111.30  Aligned_cols=118  Identities=16%  Similarity=0.122  Sum_probs=93.0

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      .+.++++++|++|||.|||+|+.+..++..   ...|+++|+++.+++.+++|++.+|+.++.+.++|+++.+..     
T Consensus       174 ~~~l~~~~~g~~vLDp~cGtG~~lieaa~~---~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l~~~-----  245 (329)
T TIGR01177       174 MVNLARVTEGDRVLDPFCGTGGFLIEAGLM---GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKLPLS-----  245 (329)
T ss_pred             HHHHhCCCCcCEEEECCCCCCHHHHHHHHh---CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcCCcc-----
Confidence            345567899999999999999998876653   468999999999999999999999998899999999875321     


Q ss_pred             CCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                                .+.||.|++||||.....   ..             .  .....++.++|+.+.. |+.+|.+++
T Consensus       246 ----------~~~~D~Iv~dPPyg~~~~---~~-------------~--~~~~~l~~~~l~~~~r~Lk~gG~lv~  292 (329)
T TIGR01177       246 ----------SESVDAIATDPPYGRSTT---AA-------------G--DGLESLYERSLEEFHEVLKSEGWIVY  292 (329)
T ss_pred             ----------cCCCCEEEECCCCcCccc---cc-------------C--CchHHHHHHHHHHHHHHccCCcEEEE
Confidence                      246899999999965332   10             0  1245678889988865 788887776

This family is found exclusively in the Archaea.

>COG2016 Predicted RNA-binding protein (contains PUA domain) [Translation, ribosomal structure and biogenesis]

Probab=99.09  E-value=2.1e-10  Score=103.22  Aligned_cols=73  Identities=30%  Similarity=0.464  Sum_probs=67.4

Q ss_pred             CCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEE
Q 014571          123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI  202 (422)
Q Consensus       123 ~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~V  202 (422)
                      ...|+||++|...|++|||||+|||+.++..+++||.|.|..                               +.++.++
T Consensus        76 ~~~V~VD~GAvk~v~nGADvM~PGIv~~~~~ik~Gd~VvV~~-------------------------------e~~~~pl  124 (161)
T COG2016          76 KYVVVVDEGAVKFVLNGADVMAPGIVSADGEIKEGDIVVVVD-------------------------------EKKGRPL  124 (161)
T ss_pred             ccEEEEcCccHhhhcCCCceeccceeecCCCccCCCEEEEEE-------------------------------cCCCCee
Confidence            348999999999999999999999999999999999999984                               5668899


Q ss_pred             EEccCccCHHHHhcccCcceeecc
Q 014571          203 GQGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       203 rvg~a~msreel~~~~~GiaV~~~  226 (422)
                      ++|.+.|+.++|.+..+|.+++..
T Consensus       125 AVG~alm~~~em~~~~kGkav~~i  148 (161)
T COG2016         125 AVGIALMSGKEMEEKKKGKAVKNI  148 (161)
T ss_pred             EEEeeccCHHHHhhhcCCeEEEEE
Confidence            999999999999999999998854

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=99.07  E-value=3.4e-10  Score=115.34  Aligned_cols=142  Identities=13%  Similarity=0.117  Sum_probs=96.8

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc-cccCCC
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP-NMCNSK  341 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~-~~~~~~  341 (422)
                      .+|||+|||+|..++.++...   .+|+|+|.++..++.+++|++..|+.|++++.+|+.++........... ......
T Consensus       199 ~~vlDl~~G~G~~sl~la~~~---~~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~  275 (353)
T TIGR02143       199 GDLLELYCGNGNFSLALAQNF---RRVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEEFTQAMNGVREFRRLKGIDL  275 (353)
T ss_pred             CcEEEEeccccHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHHHHHHHhhcccccccccccc
Confidence            479999999999999999874   4899999999999999999999999999999999988653210000000 000000


Q ss_pred             CCCCCCceeecCCccccCc--hhhhhhCCCCCccccccCcccchhHH-HHH-HHHHHhccceeccEEEe-----hhhHHH
Q 014571          342 DNNYITSQTSDSMKLHKEV--PSIAAEGLNGDKSCKEKGRTCGECGM-AQE-EINALVVGLRIQKVLVL-----TALIES  412 (422)
Q Consensus       342 ~~~~FD~VLvDaPCSg~G~--l~~lrr~p~~~~~w~~~~~~~~~l~~-~Q~-~IL~~a~~lr~~~~~~~-----t~~~~~  412 (422)
                      ....||.|++|||.+|.+.  ++.+.+ |        +..-+-+|.+ ++. ++-.-..++++.++..+     |.|+|+
T Consensus       276 ~~~~~d~v~lDPPR~G~~~~~l~~l~~-~--------~~ivYvsC~p~tlaRDl~~L~~~Y~l~~v~~~DmFP~T~HvE~  346 (353)
T TIGR02143       276 KSYNCSTIFVDPPRAGLDPDTCKLVQA-Y--------ERILYISCNPETLKANLEQLSETHRVERFALFDQFPYTHHMEC  346 (353)
T ss_pred             ccCCCCEEEECCCCCCCcHHHHHHHHc-C--------CcEEEEEcCHHHHHHHHHHHhcCcEEEEEEEcccCCCCCcEEE
Confidence            0124899999999998543  244444 3        2333445544 232 22221234999999888     999999


Q ss_pred             HHhh
Q 014571          413 FLML  416 (422)
Q Consensus       413 ~~~~  416 (422)
                      +-.|
T Consensus       347 v~lL  350 (353)
T TIGR02143       347 GVLL  350 (353)
T ss_pred             EEEE
Confidence            7543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.07  E-value=9.4e-10  Score=104.17  Aligned_cols=92  Identities=13%  Similarity=0.201  Sum_probs=78.7

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      ......+++++|++|||++||+|..|..+++..+..++|+++|+++..++.+++++++.|++|++++.+|+.....    
T Consensus        67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~~----  142 (215)
T TIGR00080        67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGWE----  142 (215)
T ss_pred             HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCCc----
Confidence            3455678899999999999999999999999877678999999999999999999999999999999999864321    


Q ss_pred             CCCCccccCCCCCCCCCceeecCCccc
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                                 ....||.|++|+++..
T Consensus       143 -----------~~~~fD~Ii~~~~~~~  158 (215)
T TIGR00080       143 -----------PLAPYDRIYVTAAGPK  158 (215)
T ss_pred             -----------ccCCCCEEEEcCCccc
Confidence                       1246999999987654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.07  E-value=8.8e-10  Score=100.76  Aligned_cols=121  Identities=18%  Similarity=0.144  Sum_probs=94.6

Q ss_pred             ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571          247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR  326 (422)
Q Consensus       247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~  326 (422)
                      |.+|.+.+..+...++.+|||+|||+|-.+..+++.. +..+|+++|+++..++.+++|++..++.+++++..|..... 
T Consensus        17 d~~t~lL~~~l~~~~~~~vLDlG~G~G~i~~~la~~~-~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~-   94 (170)
T PF05175_consen   17 DAGTRLLLDNLPKHKGGRVLDLGCGSGVISLALAKRG-PDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEAL-   94 (170)
T ss_dssp             HHHHHHHHHHHHHHTTCEEEEETSTTSHHHHHHHHTS-TCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTC-
T ss_pred             CHHHHHHHHHHhhccCCeEEEecCChHHHHHHHHHhC-CCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccc-
Confidence            7788888888887789999999999999999999875 45689999999999999999999999988999998875422 


Q ss_pred             ccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEE
Q 014571          327 RKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLV  405 (422)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~  405 (422)
                                     ....||.|+++||....+.                      .-...++++++.+.. |+.+|.+.
T Consensus        95 ---------------~~~~fD~Iv~NPP~~~~~~----------------------~~~~~~~~~i~~a~~~Lk~~G~l~  137 (170)
T PF05175_consen   95 ---------------PDGKFDLIVSNPPFHAGGD----------------------DGLDLLRDFIEQARRYLKPGGRLF  137 (170)
T ss_dssp             ---------------CTTCEEEEEE---SBTTSH----------------------CHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred             ---------------cccceeEEEEccchhcccc----------------------cchhhHHHHHHHHHHhccCCCEEE
Confidence                           1367999999999111111                      233467788877754 89999885


Q ss_pred             e
Q 014571          406 L  406 (422)
Q Consensus       406 ~  406 (422)
                      +
T Consensus       138 l  138 (170)
T PF05175_consen  138 L  138 (170)
T ss_dssp             E
T ss_pred             E
Confidence            5

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=99.06  E-value=7.6e-10  Score=107.67  Aligned_cols=123  Identities=16%  Similarity=0.109  Sum_probs=91.0

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      ++.+|||+|||+|..++.+++..+ ..+|+++|+++..++.+++|++..|   ++++++|..+....             
T Consensus        86 ~~~~vLDlg~GsG~i~l~la~~~~-~~~v~~vDis~~al~~A~~N~~~~~---~~~~~~D~~~~l~~-------------  148 (251)
T TIGR03704        86 GTLVVVDLCCGSGAVGAALAAALD-GIELHAADIDPAAVRCARRNLADAG---GTVHEGDLYDALPT-------------  148 (251)
T ss_pred             CCCEEEEecCchHHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHHHHHcC---CEEEEeechhhcch-------------
Confidence            356899999999999999998754 3689999999999999999999876   36788887653210             


Q ss_pred             CCCCCCCceeecCCccccCchhhhhhC-CCCCccccc----cCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          341 KDNNYITSQTSDSMKLHKEVPSIAAEG-LNGDKSCKE----KGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~-p~~~~~w~~----~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                      ...+.||.|++||||...+.   +.+. |+.. .+.+    .+.  .+-...+++|++++.. |+.+|.+++
T Consensus       149 ~~~~~fDlVv~NPPy~~~~~---~~~~~~e~~-~~ep~~al~gg--~dgl~~~~~i~~~a~~~L~~gG~l~l  214 (251)
T TIGR03704       149 ALRGRVDILAANAPYVPTDA---IALMPPEAR-DHEPRVALDGG--ADGLDVLRRVAAGAPDWLAPGGHLLV  214 (251)
T ss_pred             hcCCCEeEEEECCCCCCchh---hhcCCHHHH-hCCCHHHhcCC--CcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence            01246999999999998877   4332 3322 1111    111  2456689999998865 899999998

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=99.06  E-value=9e-10  Score=93.20  Aligned_cols=111  Identities=16%  Similarity=0.064  Sum_probs=84.8

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccccCC
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      |.+|||+|||.|..+.++++..  ..+++++|+++..++.+++++.+.++ .+++++++|.++.....            
T Consensus         1 g~~vlD~~~G~G~~~~~~~~~~--~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~------------   66 (117)
T PF13659_consen    1 GDRVLDPGCGSGTFLLAALRRG--AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL------------   66 (117)
T ss_dssp             TEEEEEETSTTCHHHHHHHHHC--TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC------------
T ss_pred             CCEEEEcCcchHHHHHHHHHHC--CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc------------
Confidence            6799999999999999999884  58999999999999999999999988 57999999998875221            


Q ss_pred             CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                       ..+.||.|+.|+|......   ..+                .......++++++.. ||.+|++++
T Consensus        67 -~~~~~D~Iv~npP~~~~~~---~~~----------------~~~~~~~~~~~~~~~~L~~gG~~~~  113 (117)
T PF13659_consen   67 -PDGKFDLIVTNPPYGPRSG---DKA----------------ALRRLYSRFLEAAARLLKPGGVLVF  113 (117)
T ss_dssp             -TTT-EEEEEE--STTSBTT-----------------------GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -cCceeEEEEECCCCccccc---cch----------------hhHHHHHHHHHHHHHHcCCCeEEEE
Confidence             1356999999999976433   100                011155577777765 899999876

...

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.06  E-value=1.5e-09  Score=91.01  Aligned_cols=110  Identities=23%  Similarity=0.158  Sum_probs=82.5

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      ||.+|||++||+|..+..+++.. +..+|+|+|+|+.+++.+++++.+.+. .+|++++.|+ ....             
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~-~~~~-------------   65 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLF-PGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA-EFDP-------------   65 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC-HGGT-------------
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcC-CCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc-ccCc-------------
Confidence            68999999999999999999943 468999999999999999999977665 7899999998 2211             


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehhh
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTAL  409 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~~  409 (422)
                       .....||.|+++. -+....                  .   .. .-++++|+++.. |+.+|.+++++|
T Consensus        66 -~~~~~~D~v~~~~-~~~~~~------------------~---~~-~~~~~~l~~~~~~L~pgG~lvi~~~  112 (112)
T PF12847_consen   66 -DFLEPFDLVICSG-FTLHFL------------------L---PL-DERRRVLERIRRLLKPGGRLVINTC  112 (112)
T ss_dssp             -TTSSCEEEEEECS-GSGGGC------------------C---HH-HHHHHHHHHHHHHEEEEEEEEEEE-
T ss_pred             -ccCCCCCEEEECC-Cccccc------------------c---ch-hHHHHHHHHHHHhcCCCcEEEEEEC
Confidence             1134589999854 211101                  0   12 456677777754 899999999875

...

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.06  E-value=6.4e-10  Score=107.26  Aligned_cols=85  Identities=20%  Similarity=0.209  Sum_probs=75.5

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      ...+..+.+.+|++|||+|||+|.-|.++++..+ .|+|+++|+|.+|++.+++++...|..+|+++.+||..++.++  
T Consensus        41 ~~~i~~~~~~~g~~vLDva~GTGd~a~~~~k~~g-~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D--  117 (238)
T COG2226          41 RALISLLGIKPGDKVLDVACGTGDMALLLAKSVG-TGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPD--  117 (238)
T ss_pred             HHHHHhhCCCCCCEEEEecCCccHHHHHHHHhcC-CceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCC--
Confidence            4455666677999999999999999999999987 8999999999999999999999999988999999999987543  


Q ss_pred             CCCCccccCCCCCCCCCceee
Q 014571          331 SNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLv  351 (422)
                                   ++||.|.+
T Consensus       118 -------------~sFD~vt~  125 (238)
T COG2226         118 -------------NSFDAVTI  125 (238)
T ss_pred             -------------CccCEEEe
Confidence                         46888877

>PF01472 PUA: PUA domain; InterPro: IPR002478 The PUA (PseudoUridine synthase and Archaeosine transglycosylase) domain was named after the proteins in which it was first found []

Probab=99.04  E-value=3.2e-10  Score=90.16  Aligned_cols=71  Identities=35%  Similarity=0.561  Sum_probs=61.7

Q ss_pred             CEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEE
Q 014571          124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIG  203 (422)
Q Consensus       124 k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vr  203 (422)
                      +.|+||++|++++++||++|+|||+.++.+|++||.|.|+                                ...+.+|+
T Consensus         1 g~vvVd~~a~~~i~~Ga~L~~~GV~~~~~~f~~gd~V~i~--------------------------------~~~g~~ia   48 (74)
T PF01472_consen    1 GRVVVDDGAVEAILNGASLFAPGVVEVDGDFRKGDEVAIV--------------------------------DEDGEVIA   48 (74)
T ss_dssp             EEEEE-HHHHHHHHTTSEEEGGGEEEEETT--TTSEEEEE--------------------------------ETTSSEEE
T ss_pred             CEEEECccHHHHHHcCCCcchHHhEECCCCcCCCCEEEEE--------------------------------cCCCeEEE
Confidence            3689999999999999999999999999999999999999                                33478999


Q ss_pred             EccCccCHHHHhcccCcceeecc
Q 014571          204 QGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       204 vg~a~msreel~~~~~GiaV~~~  226 (422)
                      +|++.++++++.+..+|.+++..
T Consensus        49 ~G~a~~ss~ei~~~~~g~~~~~~   71 (74)
T PF01472_consen   49 VGRANMSSEEIKKMKKGKAVKIR   71 (74)
T ss_dssp             EEEESSTHHHHHHHSSSEEEEEE
T ss_pred             EEEEecCHHHHHHHcCCcEehhh
Confidence            99999999999998899888753

PUA is a highly conserved RNA-binding motif found in a wide range of archaeal, bacterial and eukaryotic proteins, including enzymes that catalyse tRNA and rRNA post-transcriptional modifications, proteins involved in ribosome biogenesis and translation, as well as in enzymes involved in proline biosynthesis [, ]. The structures of several PUA-RNA complexes reveal a common RNA recognition surface, but also some versatility in the way in which the motif binds to RNA []. PUA motifs are involved in dyskeratosis congenita and cancer, pointing to links between RNA metabolism and human diseases [].; GO: 0003723 RNA binding; PDB: 1ZE2_A 1ZE1_A 1R3E_A 2AB4_A 3R90_D 2J5T_A 2J5V_B 1Q7H_A 2APO_A 2RFK_A ....

>PRK14967 putative methyltransferase; Provisional

Probab=99.03  E-value=1.7e-09  Score=102.91  Aligned_cols=138  Identities=22%  Similarity=0.211  Sum_probs=98.1

Q ss_pred             cceEEEeChhHHHHHHhc---CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEE
Q 014571          240 EGEIFLQNLPSIVTAHAL---DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT  316 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L---~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~  316 (422)
                      .|.+..|. .|.+.+..+   .++++++|||+|||+|..+..++..  +.++|+++|+++.+++.+++|+++.|+ ++.+
T Consensus        13 ~g~~~p~~-ds~~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~--~~~~v~~vD~s~~~l~~a~~n~~~~~~-~~~~   88 (223)
T PRK14967         13 PGVYRPQE-DTQLLADALAAEGLGPGRRVLDLCTGSGALAVAAAAA--GAGSVTAVDISRRAVRSARLNALLAGV-DVDV   88 (223)
T ss_pred             CCCcCCCC-cHHHHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHHhCC-eeEE
Confidence            45555555 445555544   4678999999999999999998876  235999999999999999999999887 5788


Q ss_pred             EecchhhhhhccCCCCCCccccCCCCCCCCCceeecCC---ccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHH
Q 014571          317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSM---KLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINA  393 (422)
Q Consensus       317 ~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP---CSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~  393 (422)
                      +.+|.....                ..+.||.|++|+|   |+..+.   ..+.+..  .|....    +-...+..+++
T Consensus        89 ~~~d~~~~~----------------~~~~fD~Vi~npPy~~~~~~~~---~~~~~~~--~~~~~~----~~~~~~~~~l~  143 (223)
T PRK14967         89 RRGDWARAV----------------EFRPFDVVVSNPPYVPAPPDAP---PSRGPAR--AWDAGP----DGRAVLDRLCD  143 (223)
T ss_pred             EECchhhhc----------------cCCCeeEEEECCCCCCCCcccc---cccChhH--hhhCCC----cHHHHHHHHHH
Confidence            888875421                1246999999987   444443   3344443  244322    22345677888


Q ss_pred             Hhcc-ceeccEEEe
Q 014571          394 LVVG-LRIQKVLVL  406 (422)
Q Consensus       394 ~a~~-lr~~~~~~~  406 (422)
                      .+.. |+.+|.+++
T Consensus       144 ~a~~~Lk~gG~l~~  157 (223)
T PRK14967        144 AAPALLAPGGSLLL  157 (223)
T ss_pred             HHHHhcCCCcEEEE
Confidence            7765 899999887

>PRK14560 putative RNA-binding protein; Provisional

Probab=99.00  E-value=7.6e-10  Score=100.75  Aligned_cols=74  Identities=27%  Similarity=0.444  Sum_probs=67.1

Q ss_pred             CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571          122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY  201 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~  201 (422)
                      ..+.|+||.+|++++++||++|+|||+.++.++++||.|.|..                               +.++.+
T Consensus        75 ~~~~v~Vd~~a~~~i~~Ga~lm~pGV~~~~~~~~~Gd~V~I~~-------------------------------~~~~~~  123 (160)
T PRK14560         75 EKRRVVVDAGAVKFVSNGADVMAPGIVEADEDIKEGDIVFVVE-------------------------------ETHGKP  123 (160)
T ss_pred             cCCEEEEeccHHHHHHCCCceecCeeeeCCCCCCCCCEEEEEE-------------------------------CCCCeE
Confidence            4689999999999999999999999999999999999999993                               334788


Q ss_pred             EEEccCccCHHHHhcccCcceeecc
Q 014571          202 IGQGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       202 Vrvg~a~msreel~~~~~GiaV~~~  226 (422)
                      +++|++.++.+++.+..+|.+++..
T Consensus       124 vavG~~~~s~~ei~~~~kG~~v~~~  148 (160)
T PRK14560        124 LAVGRALMDGDEMVEEKKGKAVKNI  148 (160)
T ss_pred             EEEEEEeeCHHHHhhcCCceEEEEE
Confidence            9999999999999988999999864

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=98.98  E-value=3.8e-09  Score=104.59  Aligned_cols=129  Identities=24%  Similarity=0.193  Sum_probs=93.6

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCc
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      +.++++.+|||+|||+|..+..++... +.++|+|+|+|+..++.+++|+++.|+. ++.++++|.....      +   
T Consensus       117 ~~~~~~~~vLDlG~GsG~i~~~la~~~-~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~------~---  186 (284)
T TIGR03533       117 LEPEPVKRILDLCTGSGCIAIACAYAF-PEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAAL------P---  186 (284)
T ss_pred             hccCCCCEEEEEeCchhHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc------C---
Confidence            334566799999999999999999875 3579999999999999999999999984 6999999975421      0   


Q ss_pred             cccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCccc--chhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTC--GECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~--~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                             ...||.|++|||+...+.   +..-+... .+.|.....  ..--...+.|++.+.. |+.+|.+++
T Consensus       187 -------~~~fD~Iv~NPPy~~~~~---~~~l~~~~-~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~  249 (284)
T TIGR03533       187 -------GRKYDLIVSNPPYVDAED---MADLPAEY-HHEPELALASGEDGLDLVRRILAEAADHLNENGVLVV  249 (284)
T ss_pred             -------CCCccEEEECCCCCCccc---hhhCCHhh-hcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEE
Confidence                   235999999999988776   22222111 122211000  0122467788988865 899999988

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00451 unchar_dom_2 uncharacterized domain 2

Probab=98.97  E-value=7.1e-10  Score=94.24  Aligned_cols=88  Identities=25%  Similarity=0.311  Sum_probs=73.6

Q ss_pred             EEEeCCCCcccCCCCCCCCCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhh
Q 014571          103 VFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRG  182 (422)
Q Consensus       103 l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~  182 (422)
                      ++....|++.++.      ..+.|+||.+|++++++||++|+|||+.++.++++||.|.|..                  
T Consensus        16 ~~ptl~~~~~~~~------~~~~v~vd~~a~~~l~~Ga~L~~pGV~~~~~~~~~gd~V~I~~------------------   71 (107)
T TIGR00451        16 VIPSLKGALKLME------DKKIVVVDNGAVKFLKNGADVMRPGIVDADEDIKEGDDVVVVD------------------   71 (107)
T ss_pred             EcccHHHHHhChh------hCCEEEEChhHHHHHHCCccccCCeeEeCCCCcCCCCEEEEEE------------------
Confidence            3334466655432      4789999999999999999999999999999999999999993                  


Q ss_pred             cccCCCCCCCcccCCCceEEEEccCccCHHHHhcccCcceeeccc
Q 014571          183 TVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHN  227 (422)
Q Consensus       183 ~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~~~~~GiaV~~~~  227 (422)
                                   +.++.++++|++.++++++.+..+|++++...
T Consensus        72 -------------~~~~~~iavG~a~~~s~e~~~~~~G~~v~~~h  103 (107)
T TIGR00451        72 -------------ENKDRPLAVGIALMSGEEMKEMDKGKAVKNIH  103 (107)
T ss_pred             -------------CCCCeEEEEEEEecCHHHHHhcCCCeEEEEEE
Confidence                         33368999999999999999889999988643

This uncharacterized domain is found a number of enzymes and uncharacterized proteins, often at the C-terminus. It is found in some but not all members of a family of related tRNA-guanine transglycosylases (tgt), which exchange a guanine base for some modified base without breaking the phosphodiester backbone of the tRNA. It is also found in rRNA pseudouridine synthase, another enzyme of RNA base modification not otherwise homologous to tgt. It is found, again at the C-terminus, in two putative glutamate 5-kinases. It is also found in a family of small, uncharacterized archaeal proteins consisting mostly of this domain.

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.97  E-value=4.1e-09  Score=99.87  Aligned_cols=88  Identities=16%  Similarity=0.270  Sum_probs=75.6

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      ......+++++|++|||+|||+|..|..+++.++..++|+++|+++..++.+++++++.|+.|++++.+|+.....    
T Consensus        66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~~~----  141 (212)
T PRK13942         66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLGYE----  141 (212)
T ss_pred             HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccCCC----
Confidence            3455677899999999999999999999999987778999999999999999999999999999999999864321    


Q ss_pred             CCCCccccCCCCCCCCCceeecC
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDa  353 (422)
                                 ..+.||+|++++
T Consensus       142 -----------~~~~fD~I~~~~  153 (212)
T PRK13942        142 -----------ENAPYDRIYVTA  153 (212)
T ss_pred             -----------cCCCcCEEEECC
Confidence                       135699999864

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=98.97  E-value=6e-09  Score=95.63  Aligned_cols=132  Identities=14%  Similarity=0.033  Sum_probs=95.6

Q ss_pred             hhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhc
Q 014571          248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR  327 (422)
Q Consensus       248 ~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~  327 (422)
                      .-|.++...+...++.+|||+|||+|..+..++...   .+|+++|+++.+++.+++|++..+. +++++.+|..+..  
T Consensus         6 ~d~~~l~~~l~~~~~~~vLdlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~--   79 (179)
T TIGR00537         6 EDSLLLEANLRELKPDDVLEIGAGTGLVAIRLKGKG---KCILTTDINPFAVKELRENAKLNNV-GLDVVMTDLFKGV--   79 (179)
T ss_pred             ccHHHHHHHHHhcCCCeEEEeCCChhHHHHHHHhcC---CEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEccccccc--
Confidence            345667777777788999999999999999999863   2899999999999999999998886 5888888865421  


Q ss_pred             cCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          328 KNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                                     .+.||.|++++|+.....  ..++++.....|....    .-...+.++|+.+.. |+.+|.+++
T Consensus        80 ---------------~~~fD~Vi~n~p~~~~~~--~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~~~Lk~gG~~~~  138 (179)
T TIGR00537        80 ---------------RGKFDVILFNPPYLPLED--DLRRGDWLDVAIDGGK----DGRKVIDRFLDELPEILKEGGRVQL  138 (179)
T ss_pred             ---------------CCcccEEEECCCCCCCcc--hhcccchhhhhhhcCC----chHHHHHHHHHhHHHhhCCCCEEEE
Confidence                           236999999999965432  0222222111222211    123467888988865 899998887

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.93  E-value=9.7e-09  Score=102.83  Aligned_cols=124  Identities=23%  Similarity=0.145  Sum_probs=90.8

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccccCC
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      +.+|||+|||+|..+..++... +..+|+|+|+|+..++.+++|+++.|+. +|+++++|.....      +        
T Consensus       134 ~~~VLDlG~GsG~iai~la~~~-p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l------~--------  198 (307)
T PRK11805        134 VTRILDLCTGSGCIAIACAYAF-PDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAAL------P--------  198 (307)
T ss_pred             CCEEEEEechhhHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhC------C--------
Confidence            4799999999999999999875 4579999999999999999999999985 5999999975421      0        


Q ss_pred             CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCccc--chhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTC--GECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~--~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                        ...||.|++|||+.+.+..   ..-+... .+.|.....  ..=-...+.|++.+.. |+.+|.+++
T Consensus       199 --~~~fDlIvsNPPyi~~~~~---~~l~~~~-~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~  261 (307)
T PRK11805        199 --GRRYDLIVSNPPYVDAEDM---ADLPAEY-RHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVV  261 (307)
T ss_pred             --CCCccEEEECCCCCCccch---hhcCHhh-ccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEE
Confidence              2359999999999998762   2111111 122211100  0112466788888865 899999998

>PTZ00146 fibrillarin; Provisional

Probab=98.93  E-value=4e-09  Score=104.40  Aligned_cols=84  Identities=23%  Similarity=0.237  Sum_probs=67.0

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      +.++||++|||+|||||.+|.|+++.+++.|+|+|+|+++.+++.+.+.+++.  +||.++..|++.... .   .    
T Consensus       128 l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~NI~~I~~Da~~p~~-y---~----  197 (293)
T PTZ00146        128 IPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PNIVPIIEDARYPQK-Y---R----  197 (293)
T ss_pred             eccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCCEEEECCccChhh-h---h----
Confidence            45789999999999999999999999988899999999988777777766543  689999999875310 0   0    


Q ss_pred             ccCCCCCCCCCceeecCC
Q 014571          337 MCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaP  354 (422)
                          .....||.|++|..
T Consensus       198 ----~~~~~vDvV~~Dva  211 (293)
T PTZ00146        198 ----MLVPMVDVIFADVA  211 (293)
T ss_pred             ----cccCCCCEEEEeCC
Confidence                01235899999984

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.91  E-value=5.5e-09  Score=99.11  Aligned_cols=94  Identities=21%  Similarity=0.305  Sum_probs=76.0

Q ss_pred             hhHHH--HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          248 LPSIV--TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       248 ~~S~l--v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      .+|++  ...+|+++||++|||+++|+|-.|..++.+.++.|+|+++|+++.-++.++++++++|..||.++.+|+....
T Consensus        57 ~P~~~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~  136 (209)
T PF01135_consen   57 APSMVARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW  136 (209)
T ss_dssp             -HHHHHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence            35444  4577889999999999999999999999999988999999999999999999999999999999999987532


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      .               ..+.||+|++.+.|.
T Consensus       137 ~---------------~~apfD~I~v~~a~~  152 (209)
T PF01135_consen  137 P---------------EEAPFDRIIVTAAVP  152 (209)
T ss_dssp             G---------------GG-SEEEEEESSBBS
T ss_pred             c---------------cCCCcCEEEEeeccc
Confidence            1               135699999976654

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.90  E-value=1.1e-08  Score=96.27  Aligned_cols=88  Identities=14%  Similarity=0.271  Sum_probs=74.4

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNE  330 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~  330 (422)
                      .....+++++|++|||++||+|..|..+++.++..++|+++|+++.+++.+++|+++.|+. +++++.+|+.....    
T Consensus        63 ~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~----  138 (205)
T PRK13944         63 MMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLE----  138 (205)
T ss_pred             HHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCc----
Confidence            3456778899999999999999999999999876789999999999999999999999985 58999999865321    


Q ss_pred             CCCCccccCCCCCCCCCceeecCC
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                                 ....||.|+++..
T Consensus       139 -----------~~~~fD~Ii~~~~  151 (205)
T PRK13944        139 -----------KHAPFDAIIVTAA  151 (205)
T ss_pred             -----------cCCCccEEEEccC
Confidence                       1246999999754

>PRK04266 fibrillarin; Provisional

Probab=98.90  E-value=7e-09  Score=99.54  Aligned_cols=93  Identities=23%  Similarity=0.274  Sum_probs=72.8

Q ss_pred             ChhHHHHHHh--cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          247 NLPSIVTAHA--LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       247 d~~S~lv~~~--L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      ..++.+.+.+  +++++|++|||+|||+|..|.++++.++ .|+|+|+|+++.+++.+.+++++.  .||.++.+|+...
T Consensus        56 ~~~~~ll~~~~~l~i~~g~~VlD~G~G~G~~~~~la~~v~-~g~V~avD~~~~ml~~l~~~a~~~--~nv~~i~~D~~~~  132 (226)
T PRK04266         56 KLAAAILKGLKNFPIKKGSKVLYLGAASGTTVSHVSDIVE-EGVVYAVEFAPRPMRELLEVAEER--KNIIPILADARKP  132 (226)
T ss_pred             chHHHHHhhHhhCCCCCCCEEEEEccCCCHHHHHHHHhcC-CCeEEEEECCHHHHHHHHHHhhhc--CCcEEEECCCCCc
Confidence            4455555544  8899999999999999999999999886 789999999999999998888764  6899999998642


Q ss_pred             hhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          325 VRRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      ...    .        .....||.|++|.+
T Consensus       133 ~~~----~--------~l~~~~D~i~~d~~  150 (226)
T PRK04266        133 ERY----A--------HVVEKVDVIYQDVA  150 (226)
T ss_pred             chh----h--------hccccCCEEEECCC
Confidence            100    0        11245999998754

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.89  E-value=6.8e-09  Score=107.36  Aligned_cols=105  Identities=17%  Similarity=0.122  Sum_probs=80.8

Q ss_pred             ccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc--ce
Q 014571          237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK--CI  314 (422)
Q Consensus       237 ~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~--nv  314 (422)
                      ..+.|.|+-|-..-..+...   .+|.+|||+|||+|+.+++++.  ++..+|+++|+++..++.+++|++..|+.  ++
T Consensus       199 g~ktG~flDqr~~R~~~~~~---~~g~rVLDlfsgtG~~~l~aa~--~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v  273 (396)
T PRK15128        199 GHKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALM--GGCSQVVSVDTSQEALDIARQNVELNKLDLSKA  273 (396)
T ss_pred             ccccCcChhhHHHHHHHHHh---cCCCeEEEeccCCCHHHHHHHh--CCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcE
Confidence            34688888885544444333   3689999999999998877654  34569999999999999999999999984  79


Q ss_pred             EEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccc
Q 014571          315 TTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       315 ~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                      +++++|+..+.....           .....||.|++|||+-.
T Consensus       274 ~~i~~D~~~~l~~~~-----------~~~~~fDlVilDPP~f~  305 (396)
T PRK15128        274 EFVRDDVFKLLRTYR-----------DRGEKFDVIVMDPPKFV  305 (396)
T ss_pred             EEEEccHHHHHHHHH-----------hcCCCCCEEEECCCCCC
Confidence            999999987653211           01346999999999844

>TIGR03684 arCOG00985 arCOG04150 universal archaeal PUA-domain protein

Probab=98.87  E-value=3e-09  Score=95.81  Aligned_cols=74  Identities=23%  Similarity=0.407  Sum_probs=67.4

Q ss_pred             CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571          122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY  201 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~  201 (422)
                      ..+.|+||.+|++++++||++|+|||+.++.++++||.|.|..                               +.++.+
T Consensus        68 ~~~~v~Vd~~a~~~l~~Ga~lm~pGV~~~~~~~~~Gd~V~I~~-------------------------------~~~~~~  116 (150)
T TIGR03684        68 DKNRVVVDEGAVKFIINGADIMAPGIVSADPSIKEGDIVFVVD-------------------------------ETHRKP  116 (150)
T ss_pred             cCCEEEECccHHHHHhcCcccccCceecCCCCCCCCCEEEEEE-------------------------------CCCCeE
Confidence            4699999999999999999999999999999999999999993                               334789


Q ss_pred             EEEccCccCHHHHhcccCcceeecc
Q 014571          202 IGQGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       202 Vrvg~a~msreel~~~~~GiaV~~~  226 (422)
                      +++|++.++.+++....+|.+++..
T Consensus       117 vavG~a~~ss~ei~~~~kG~av~~~  141 (150)
T TIGR03684       117 LAVGIALMDAEEMEEEKKGKAVKNI  141 (150)
T ss_pred             EEEEEEeeCHHHHhhcCCCeEEEEE
Confidence            9999999999999988999998864

This universal archaeal protein contains a domain possibly associated with RNA binding (pfam01472, TIGR00451).

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=98.87  E-value=1.3e-08  Score=97.40  Aligned_cols=126  Identities=19%  Similarity=0.088  Sum_probs=90.3

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      .+.+|||+|||+|..+..+++... ...++++|+++.+++.++++++..|+.++.++++|+....               
T Consensus        87 ~~~~ilDig~G~G~~~~~l~~~~~-~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~---------------  150 (251)
T TIGR03534        87 GPLRVLDLGTGSGAIALALAKERP-DARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFEPL---------------  150 (251)
T ss_pred             CCCeEEEEeCcHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhccC---------------
Confidence            456999999999999999998754 4699999999999999999999999988999999976421               


Q ss_pred             CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCccc--chhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTC--GECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~--~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                       ..+.||.|++++|+...+.   +.........|.+.....  ..-...-..+++++.. |+.+|.+++
T Consensus       151 -~~~~fD~Vi~npPy~~~~~---~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~  215 (251)
T TIGR03534       151 -PGGKFDLIVSNPPYIPEAD---IHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLL  215 (251)
T ss_pred             -cCCceeEEEECCCCCchhh---hhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEE
Confidence             0246999999999998776   222221111121111000  0111223467777765 699999988

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.86  E-value=2.5e-08  Score=97.03  Aligned_cols=130  Identities=15%  Similarity=0.011  Sum_probs=93.6

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      +...++.+|||+|||+|..+..++... +...|+++|+++.+++.+++|++.....++.++.+|.....           
T Consensus       104 ~~~~~~~~vLDiG~GsG~~~~~la~~~-~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~~~-----------  171 (275)
T PRK09328        104 LLLKEPLRVLDLGTGSGAIALALAKER-PDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFEPL-----------  171 (275)
T ss_pred             ccccCCCEEEEEcCcHHHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccCcC-----------
Confidence            345678899999999999999999886 45899999999999999999998434467999998874321           


Q ss_pred             ccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCccc--chhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          337 MCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTC--GECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~--~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                           ..+.||.|++++|+...+.   +..-+.....+.+...-.  ..-...++.+++++.. |+.+|.+++
T Consensus       172 -----~~~~fD~Iv~npPy~~~~~---~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~  236 (275)
T PRK09328        172 -----PGGRFDLIVSNPPYIPEAD---IHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLL  236 (275)
T ss_pred             -----CCCceeEEEECCCcCCcch---hhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence                 0256999999999998776   321111111222211100  1233567788888865 899999998

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.84  E-value=1.4e-08  Score=93.99  Aligned_cols=117  Identities=17%  Similarity=0.122  Sum_probs=80.8

Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      .-.+++|++|||+|||||+.|.+++..+.+.++|+++|+++.+           +..++.++++|............   
T Consensus        27 ~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~i~~~~~d~~~~~~~~~l~~---   92 (188)
T TIGR00438        27 FKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIENVDFIRGDFTDEEVLNKIRE---   92 (188)
T ss_pred             hcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCCceEEEeeCCChhHHHHHHH---
Confidence            4456889999999999999999999987667899999999864           23567888888764321000000   


Q ss_pred             cccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                          ....+.||.|++|+++...|.             |.....   .....|..+|+++.. |+.+|.+++
T Consensus        93 ----~~~~~~~D~V~~~~~~~~~g~-------------~~~~~~---~~~~~~~~~l~~~~~~LkpgG~lvi  144 (188)
T TIGR00438        93 ----RVGDDKVDVVMSDAAPNISGY-------------WDIDHL---RSIDLVELALDIAKEVLKPKGNFVV  144 (188)
T ss_pred             ----HhCCCCccEEEcCCCCCCCCC-------------ccccHH---HHHHHHHHHHHHHHHHccCCCEEEE
Confidence                001346999999986554444             333222   122357788888765 799999998

>TIGR00536 hemK_fam HemK family putative methylases

Probab=98.83  E-value=3.3e-08  Score=97.75  Aligned_cols=125  Identities=19%  Similarity=0.112  Sum_probs=92.1

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      ++.+|||+|||+|..+..++.... ..+|+|+|+|+..++.+++|+++.|+.+ +.++++|.....              
T Consensus       114 ~~~~vLDlG~GsG~i~l~la~~~~-~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~--------------  178 (284)
T TIGR00536       114 PILHILDLGTGSGCIALALAYEFP-NAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPL--------------  178 (284)
T ss_pred             CCCEEEEEeccHhHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccC--------------
Confidence            337999999999999999998753 4799999999999999999999999864 999999875421              


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCccc--chhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTC--GECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~--~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                        ....||.|+++||......   +...++.. .|.|...-.  .+=-...+.|++.+.. |+.+|++++
T Consensus       179 --~~~~fDlIvsNPPyi~~~~---~~~~~~~~-~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~  242 (284)
T TIGR00536       179 --AGQKIDIIVSNPPYIDEED---LADLPNVV-RFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVC  242 (284)
T ss_pred             --cCCCccEEEECCCCCCcch---hhcCCccc-ccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEE
Confidence              0126999999999998765   22223322 233321100  0122367788888866 899999998

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.82  E-value=2.8e-08  Score=92.95  Aligned_cols=88  Identities=23%  Similarity=0.275  Sum_probs=73.6

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKN  329 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~  329 (422)
                      .++...+++.+|++|||+|||+|..+..++..+++.++|+++|+++.+++.+++|++++|+ .++.++.+|+.+....  
T Consensus        30 ~~~l~~l~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~--  107 (198)
T PRK00377         30 ALALSKLRLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFT--  107 (198)
T ss_pred             HHHHHHcCCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhh--
Confidence            3445567899999999999999999999998887778999999999999999999999994 7899999998754321  


Q ss_pred             CCCCCccccCCCCCCCCCceeec
Q 014571          330 ESNDEPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLvD  352 (422)
                                  ....||.|++.
T Consensus       108 ------------~~~~~D~V~~~  118 (198)
T PRK00377        108 ------------INEKFDRIFIG  118 (198)
T ss_pred             ------------cCCCCCEEEEC
Confidence                        12458999984

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=98.81  E-value=1.4e-08  Score=92.65  Aligned_cols=83  Identities=18%  Similarity=0.167  Sum_probs=61.9

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccccCCC
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCNSK  341 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~  341 (422)
                      +.|+|+|||-||-|.++|...   .+|+|+|+++.|++.+++|++-+|+ ++|.++++|..+.......           
T Consensus         1 ~~vlD~fcG~GGNtIqFA~~~---~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~-----------   66 (163)
T PF09445_consen    1 TTVLDAFCGVGGNTIQFARTF---DRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKS-----------   66 (163)
T ss_dssp             SEEEETT-TTSHHHHHHHHTT----EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-------------
T ss_pred             CEEEEeccCcCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccc-----------
Confidence            479999999999999999983   5899999999999999999999996 5899999999986543210           


Q ss_pred             CCCCCCceeecCCccccCc
Q 014571          342 DNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       342 ~~~~FD~VLvDaPCSg~G~  360 (422)
                       ...||.|++|||=-|..-
T Consensus        67 -~~~~D~vFlSPPWGGp~Y   84 (163)
T PF09445_consen   67 -NKIFDVVFLSPPWGGPSY   84 (163)
T ss_dssp             -----SEEEE---BSSGGG
T ss_pred             -cccccEEEECCCCCCccc
Confidence             112799999999998766

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.80  E-value=3.5e-08  Score=109.02  Aligned_cols=133  Identities=15%  Similarity=0.082  Sum_probs=96.0

Q ss_pred             ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc--ceEE
Q 014571          239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK--CITT  316 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~--nv~~  316 (422)
                      +.|.|.-|-..-.++...   .+|.+|||+|||+|+.+++++..  +..+|+++|+|+..++.+++|++..|+.  ++++
T Consensus       519 ~tG~flDqr~~R~~~~~~---~~g~rVLDlf~gtG~~sl~aa~~--Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~  593 (702)
T PRK11783        519 DTGLFLDHRPTRRMIGQM---AKGKDFLNLFAYTGTASVHAALG--GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRL  593 (702)
T ss_pred             cceECHHHHHHHHHHHHh---cCCCeEEEcCCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEE
Confidence            456665554433334333   35889999999999999999975  3457999999999999999999999985  6999


Q ss_pred             EecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhc
Q 014571          317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVV  396 (422)
Q Consensus       317 ~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~  396 (422)
                      +++|+.++....              ...||.|++|||+-+.+.      ..+.  .|        ...+-..+++..+.
T Consensus       594 i~~D~~~~l~~~--------------~~~fDlIilDPP~f~~~~------~~~~--~~--------~~~~~y~~l~~~a~  643 (702)
T PRK11783        594 IQADCLAWLKEA--------------REQFDLIFIDPPTFSNSK------RMED--SF--------DVQRDHVALIKDAK  643 (702)
T ss_pred             EEccHHHHHHHc--------------CCCcCEEEECCCCCCCCC------ccch--hh--------hHHHHHHHHHHHHH
Confidence            999998764321              246999999999987543      1100  11        12223556777665


Q ss_pred             c-ceeccEEEe
Q 014571          397 G-LRIQKVLVL  406 (422)
Q Consensus       397 ~-lr~~~~~~~  406 (422)
                      . ++.+|++++
T Consensus       644 ~lL~~gG~l~~  654 (702)
T PRK11783        644 RLLRPGGTLYF  654 (702)
T ss_pred             HHcCCCCEEEE
Confidence            4 789999887

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=98.78  E-value=4e-08  Score=92.42  Aligned_cols=115  Identities=14%  Similarity=0.045  Sum_probs=84.6

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecch-hhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA-LKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da-~~~~~~~~~~~~~~~~~~  339 (422)
                      ++.+|||+|||+|..+..+++.. +.+.|+++|+++.+++.++++++..+++++.++++|+ ..+....           
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~-p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~-----------  107 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKAN-PDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMF-----------  107 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHC-CCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHc-----------
Confidence            67899999999999999999876 4578999999999999999999999998999999999 5433111           


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                        ..+.||.|++..|..                 |......  .-...+..+|+.+.. |+.+|+++++.
T Consensus       108 --~~~~~D~V~~~~~~p-----------------~~~~~~~--~~~~~~~~~l~~i~~~LkpgG~l~i~~  156 (202)
T PRK00121        108 --PDGSLDRIYLNFPDP-----------------WPKKRHH--KRRLVQPEFLALYARKLKPGGEIHFAT  156 (202)
T ss_pred             --CccccceEEEECCCC-----------------CCCcccc--ccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence              134589998754311                 2111100  011146778887764 89999998854

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=98.78  E-value=2e-08  Score=97.52  Aligned_cols=106  Identities=17%  Similarity=0.184  Sum_probs=79.4

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEe
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYK  318 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~  318 (422)
                      .-.+|.-|.+  ++...|++.||.+||+.+.|.|..|..|+..+++.|+|+.+|+++.+++.+++|+++.|+. ||.+..
T Consensus        21 tQIiYpkD~~--~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~   98 (247)
T PF08704_consen   21 TQIIYPKDIS--YILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHH   98 (247)
T ss_dssp             S----HHHHH--HHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEE
T ss_pred             cceeeCchHH--HHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEe
Confidence            4557888875  5667899999999999999999999999999999999999999999999999999999994 799999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccC
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKE  359 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G  359 (422)
                      .|..+.-..     .       .....||.|++|-|.--.-
T Consensus        99 ~Dv~~~g~~-----~-------~~~~~~DavfLDlp~Pw~~  127 (247)
T PF08704_consen   99 RDVCEEGFD-----E-------ELESDFDAVFLDLPDPWEA  127 (247)
T ss_dssp             S-GGCG--S-----T-------T-TTSEEEEEEESSSGGGG
T ss_pred             cceeccccc-----c-------cccCcccEEEEeCCCHHHH
Confidence            997642210     0       1135689999999876543

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=98.77  E-value=3.4e-08  Score=88.07  Aligned_cols=82  Identities=21%  Similarity=0.231  Sum_probs=69.2

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      +.+.+|||+|||+|..+..++....+.++++++|+++.+++.+++++++.+++|+++.+.|...+...            
T Consensus         2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~------------   69 (152)
T PF13847_consen    2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQE------------   69 (152)
T ss_dssp             TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGC------------
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccc------------
Confidence            56889999999999999999966566789999999999999999999999999999999999874210            


Q ss_pred             CCCCCCCCceeecCCc
Q 014571          340 SKDNNYITSQTSDSMK  355 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPC  355 (422)
                        ..+.||.|+++.++
T Consensus        70 --~~~~~D~I~~~~~l   83 (152)
T PF13847_consen   70 --LEEKFDIIISNGVL   83 (152)
T ss_dssp             --SSTTEEEEEEESTG
T ss_pred             --cCCCeeEEEEcCch
Confidence              11568999997555

...

>PRK14968 putative methyltransferase; Provisional

Probab=98.75  E-value=1.1e-07  Score=86.67  Aligned_cols=132  Identities=17%  Similarity=0.092  Sum_probs=93.5

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc--eEEEecchhhhhhc
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC--ITTYKLDALKAVRR  327 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n--v~~~~~Da~~~~~~  327 (422)
                      +.+....+...++.+|||+|||.|..+..++..   ...|+++|+++..++.++++++..++.+  +.++..|.....  
T Consensus        12 ~~~l~~~~~~~~~~~vLd~G~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~--   86 (188)
T PRK14968         12 SFLLAENAVDKKGDRVLEVGTGSGIVAIVAAKN---GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPF--   86 (188)
T ss_pred             HHHHHHhhhccCCCEEEEEccccCHHHHHHHhh---cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccc--
Confidence            455666666788999999999999999999987   4799999999999999999999988866  888888865421  


Q ss_pred             cCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          328 KNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                                    ....||.|+.++|....+.   ..+..+ ++.+.....  ..-......+++.+.. |+.+|.+++
T Consensus        87 --------------~~~~~d~vi~n~p~~~~~~---~~~~~~-~~~~~~~~~--~~~~~~~~~~i~~~~~~Lk~gG~~~~  146 (188)
T PRK14968         87 --------------RGDKFDVILFNPPYLPTEE---EEEWDD-WLNYALSGG--KDGREVIDRFLDEVGRYLKPGGRILL  146 (188)
T ss_pred             --------------cccCceEEEECCCcCCCCc---hhhhhh-hhhhhhccC--cChHHHHHHHHHHHHHhcCCCeEEEE
Confidence                          0236999999999876554   211111 111111111  1123345677777755 788887766

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.75  E-value=5.5e-08  Score=90.65  Aligned_cols=83  Identities=18%  Similarity=0.233  Sum_probs=73.5

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL  319 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~  319 (422)
                      .|.-..|....++....+++++|++|||+|||+|..|..++... +.++|+++|+++.+++.+++|++++|+.+++++.+
T Consensus        19 ~~~p~t~~~v~~~l~~~l~~~~~~~VLDiG~G~G~~~~~la~~~-~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~   97 (196)
T PRK07402         19 PGIPLTKREVRLLLISQLRLEPDSVLWDIGAGTGTIPVEAGLLC-PKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEG   97 (196)
T ss_pred             CCCCCCHHHHHHHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEEC
Confidence            34446688888888889999999999999999999999998764 45899999999999999999999999989999999


Q ss_pred             chhh
Q 014571          320 DALK  323 (422)
Q Consensus       320 Da~~  323 (422)
                      |+..
T Consensus        98 d~~~  101 (196)
T PRK07402         98 SAPE  101 (196)
T ss_pred             chHH
Confidence            9865

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=98.74  E-value=5.8e-08  Score=92.22  Aligned_cols=87  Identities=23%  Similarity=0.280  Sum_probs=73.9

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      ......+.+++|.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++++.++++++++.+|+...+.    
T Consensus        35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~----  110 (231)
T TIGR02752        35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPF----  110 (231)
T ss_pred             HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCC----
Confidence            3455677889999999999999999999999877778999999999999999999999888899999999876431    


Q ss_pred             CCCCccccCCCCCCCCCceeec
Q 014571          331 SNDEPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvD  352 (422)
                                 ..+.||.|++.
T Consensus       111 -----------~~~~fD~V~~~  121 (231)
T TIGR02752       111 -----------DDNSFDYVTIG  121 (231)
T ss_pred             -----------CCCCccEEEEe
Confidence                       13468998863

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.74  E-value=7.3e-08  Score=90.83  Aligned_cols=87  Identities=16%  Similarity=0.244  Sum_probs=72.8

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      .....++++++++|||+|||+|..|..++.+.   ++|+++|+++.+++.+++++++.|+.++++..+|+.....     
T Consensus        69 ~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~---~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-----  140 (212)
T PRK00312         69 RMTELLELKPGDRVLEIGTGSGYQAAVLAHLV---RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGWP-----  140 (212)
T ss_pred             HHHHhcCCCCCCEEEEECCCccHHHHHHHHHh---CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCCC-----
Confidence            44567889999999999999999999888874   4899999999999999999999999999999998753210     


Q ss_pred             CCCccccCCCCCCCCCceeecCCcc
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                                ..+.||.|+++++|.
T Consensus       141 ----------~~~~fD~I~~~~~~~  155 (212)
T PRK00312        141 ----------AYAPFDRILVTAAAP  155 (212)
T ss_pred             ----------cCCCcCEEEEccCch
Confidence                      125699999988654

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.73  E-value=5.9e-08  Score=91.44  Aligned_cols=82  Identities=13%  Similarity=0.041  Sum_probs=67.6

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .++.+|||+|||.|..++.+++..  .++|+++|+++..++.+++|++..|+.++.++++|+......            
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~lsr~--a~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~------------  117 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALSRY--AAGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ------------  117 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHHcC--CCEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh------------
Confidence            578899999999999998655442  469999999999999999999999998999999998765321            


Q ss_pred             CCCCCCCCceeecCC-ccc
Q 014571          340 SKDNNYITSQTSDSM-KLH  357 (422)
Q Consensus       340 ~~~~~~FD~VLvDaP-CSg  357 (422)
                        ....||.|++||| ..|
T Consensus       118 --~~~~fDlV~~DPPy~~g  134 (199)
T PRK10909        118 --PGTPHNVVFVDPPFRKG  134 (199)
T ss_pred             --cCCCceEEEECCCCCCC
Confidence              0235899999999 443

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.73  E-value=6e-08  Score=96.55  Aligned_cols=94  Identities=16%  Similarity=0.109  Sum_probs=79.0

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      +...|.++||..++|++||.||.|..+++.+++.|+|+|+|+++..++.++++++.  ..++++++.|...+......  
T Consensus        11 vl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~--~~ri~~i~~~f~~l~~~l~~--   86 (296)
T PRK00050         11 VVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP--FGRFTLVHGNFSNLKEVLAE--   86 (296)
T ss_pred             HHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc--CCcEEEEeCCHHHHHHHHHc--
Confidence            55677889999999999999999999999987789999999999999999998876  46899999999876532211  


Q ss_pred             CCccccCCCCCCCCCceeecCCccccC
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHKE  359 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G  359 (422)
                               ....||.|++|--+|+.-
T Consensus        87 ---------~~~~vDgIl~DLGvSs~Q  104 (296)
T PRK00050         87 ---------GLGKVDGILLDLGVSSPQ  104 (296)
T ss_pred             ---------CCCccCEEEECCCccccc
Confidence                     012589999999999873

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=98.73  E-value=1e-07  Score=80.75  Aligned_cols=111  Identities=24%  Similarity=0.263  Sum_probs=85.4

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      ...+.+.++++|||++||+|..+..+++.+++ ++|+++|.++.+++.++++++..++.+++++..|+.....      .
T Consensus        12 ~~~~~~~~~~~vldlG~G~G~~~~~l~~~~~~-~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~------~   84 (124)
T TIGR02469        12 LSKLRLRPGDVLWDIGAGSGSITIEAARLVPN-GRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEALE------D   84 (124)
T ss_pred             HHHcCCCCCCEEEEeCCCCCHHHHHHHHHCCC-ceEEEEcCCHHHHHHHHHHHHHhCCCceEEEeccccccCh------h
Confidence            34557778899999999999999999998654 8999999999999999999999998889998888653211      0


Q ss_pred             CccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehhh
Q 014571          334 EPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTAL  409 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~~  409 (422)
                              ....||.|+++.      .   .              .       ...++++.+.. ++.+|.++++.+
T Consensus        85 --------~~~~~D~v~~~~------~---~--------------~-------~~~~~l~~~~~~Lk~gG~li~~~~  123 (124)
T TIGR02469        85 --------SLPEPDRVFIGG------S---G--------------G-------LLQEILEAIWRRLRPGGRIVLNAI  123 (124)
T ss_pred             --------hcCCCCEEEECC------c---c--------------h-------hHHHHHHHHHHHcCCCCEEEEEec
Confidence                    124689998842      1   0              0       12367777755 799999998764

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=8.4e-08  Score=90.56  Aligned_cols=99  Identities=16%  Similarity=0.226  Sum_probs=79.9

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL  319 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~  319 (422)
                      .|....|=---.....+|+++||++||++++|+|--|..||++.   ++|+++|+.+.-.+.+++|++++|+.||.+.++
T Consensus        51 ~gqtis~P~~vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~---~~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~g  127 (209)
T COG2518          51 CGQTISAPHMVARMLQLLELKPGDRVLEIGTGSGYQAAVLARLV---GRVVSIERIEELAEQARRNLETLGYENVTVRHG  127 (209)
T ss_pred             CCceecCcHHHHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHh---CeEEEEEEcHHHHHHHHHHHHHcCCCceEEEEC
Confidence            45554442222334678899999999999999999999999995   599999999999999999999999999999999


Q ss_pred             chhhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          320 DALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       320 Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      |+.+-.               ...+.||+|++-+-+.
T Consensus       128 DG~~G~---------------~~~aPyD~I~Vtaaa~  149 (209)
T COG2518         128 DGSKGW---------------PEEAPYDRIIVTAAAP  149 (209)
T ss_pred             CcccCC---------------CCCCCcCEEEEeeccC
Confidence            987532               1246799999965433

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.71  E-value=8.1e-08  Score=96.83  Aligned_cols=86  Identities=15%  Similarity=0.155  Sum_probs=72.5

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      ...+++++|++|||+|||+|..|..+++..+..+.|+++|+++.+++.+++++++.|+.++.++.+|+......      
T Consensus        73 l~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~------  146 (322)
T PRK13943         73 MEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE------  146 (322)
T ss_pred             HHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc------
Confidence            34567889999999999999999999998876689999999999999999999999999999999998653211      


Q ss_pred             CccccCCCCCCCCCceeecCC
Q 014571          334 EPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaP  354 (422)
                               ...||.|++++.
T Consensus       147 ---------~~~fD~Ii~~~g  158 (322)
T PRK13943        147 ---------FAPYDVIFVTVG  158 (322)
T ss_pred             ---------cCCccEEEECCc
Confidence                     134899998643

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=98.69  E-value=3e-08  Score=92.22  Aligned_cols=86  Identities=23%  Similarity=0.244  Sum_probs=65.0

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCcccc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      -+|.+|||+|||+|.-.+..++.  +..+|+.+|.++..++.+++|++.++..+ ++++..|+.........        
T Consensus        41 ~~g~~vLDLFaGSGalGlEALSR--GA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~--------  110 (183)
T PF03602_consen   41 LEGARVLDLFAGSGALGLEALSR--GAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK--------  110 (183)
T ss_dssp             HTT-EEEETT-TTSHHHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH--------
T ss_pred             cCCCeEEEcCCccCccHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc--------
Confidence            37899999999999999887776  45699999999999999999999999976 99999998876643210        


Q ss_pred             CCCCCCCCCceeecCCcccc
Q 014571          339 NSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~  358 (422)
                         ....||.|++|||--..
T Consensus       111 ---~~~~fDiIflDPPY~~~  127 (183)
T PF03602_consen  111 ---KGEKFDIIFLDPPYAKG  127 (183)
T ss_dssp             ---CTS-EEEEEE--STTSC
T ss_pred             ---cCCCceEEEECCCcccc
Confidence               13579999999998654

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=98.67  E-value=1.3e-07  Score=97.31  Aligned_cols=143  Identities=20%  Similarity=0.160  Sum_probs=104.0

Q ss_pred             cccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc--ceE
Q 014571          238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK--CIT  315 (422)
Q Consensus       238 ~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~--nv~  315 (422)
                      .+.|.|.=|=..-..+...+   .|.+|||+||-+||.|.|.|..  +..+|+++|.|..-++.+++|++-.|+.  .+.
T Consensus       197 ~kTGfFlDqR~~R~~l~~~~---~GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~  271 (393)
T COG1092         197 LKTGFFLDQRDNRRALGELA---AGKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHR  271 (393)
T ss_pred             ccceeeHHhHHHHHHHhhhc---cCCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCcccee
Confidence            47888888877655555544   3999999999999999998864  4559999999999999999999999984  489


Q ss_pred             EEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHh
Q 014571          316 TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALV  395 (422)
Q Consensus       316 ~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a  395 (422)
                      ++++|+.++.....           .....||.|++|||-        |.+++...  |+...    .+    .+|+..+
T Consensus       272 ~i~~Dvf~~l~~~~-----------~~g~~fDlIilDPPs--------F~r~k~~~--~~~~r----dy----~~l~~~~  322 (393)
T COG1092         272 FIVGDVFKWLRKAE-----------RRGEKFDLIILDPPS--------FARSKKQE--FSAQR----DY----KDLNDLA  322 (393)
T ss_pred             eehhhHHHHHHHHH-----------hcCCcccEEEECCcc--------cccCcccc--hhHHH----HH----HHHHHHH
Confidence            99999998876432           124579999999995        44444432  43321    11    2344444


Q ss_pred             cc-ceeccEEEe---hhhHHHHH
Q 014571          396 VG-LRIQKVLVL---TALIESFL  414 (422)
Q Consensus       396 ~~-lr~~~~~~~---t~~~~~~~  414 (422)
                      .. |+.+|+++.   +.|+.+..
T Consensus       323 ~~iL~pgG~l~~~s~~~~~~~~~  345 (393)
T COG1092         323 LRLLAPGGTLVTSSCSRHFSSDL  345 (393)
T ss_pred             HHHcCCCCEEEEEecCCccCHHH
Confidence            43 678888888   55555543

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=1e-07  Score=92.14  Aligned_cols=96  Identities=18%  Similarity=0.196  Sum_probs=83.2

Q ss_pred             eEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecc
Q 014571          242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLD  320 (422)
Q Consensus       242 ~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~D  320 (422)
                      -+|+-|.+  +++..+++.||++|+|.+.|+|.-|..||..+++.|+|+.+|+.+.+++.+++|++.+|+.+ |....+|
T Consensus        77 iIyPKD~~--~I~~~~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~D  154 (256)
T COG2519          77 IIYPKDAG--YIVARLGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGD  154 (256)
T ss_pred             eecCCCHH--HHHHHcCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecc
Confidence            46777754  67788999999999999999999999999999999999999999999999999999999977 8888888


Q ss_pred             hhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          321 ALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       321 a~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      .++...                ...||.|++|-|-
T Consensus       155 v~~~~~----------------~~~vDav~LDmp~  173 (256)
T COG2519         155 VREGID----------------EEDVDAVFLDLPD  173 (256)
T ss_pred             cccccc----------------ccccCEEEEcCCC
Confidence            775421                2368999999764

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.63  E-value=1.2e-07  Score=91.79  Aligned_cols=134  Identities=16%  Similarity=0.055  Sum_probs=101.7

Q ss_pred             ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhh
Q 014571          247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAV  325 (422)
Q Consensus       247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~  325 (422)
                      +.-|++.+.+..+....+|||+|||.|.-++.+|+...+ .+|+++|+.+...+.+++|.+-.++ ++|++++.|...+.
T Consensus        30 ~~DaiLL~~~~~~~~~~~IlDlGaG~G~l~L~la~r~~~-a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~  108 (248)
T COG4123          30 GTDAILLAAFAPVPKKGRILDLGAGNGALGLLLAQRTEK-AKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFL  108 (248)
T ss_pred             ccHHHHHHhhcccccCCeEEEecCCcCHHHHHHhccCCC-CcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhh
Confidence            446788899998888999999999999999999998654 8999999999999999999999887 56999999998765


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCC---ccccccCcccchhHHHHHHHHHHhcc-ceec
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGD---KSCKEKGRTCGECGMAQEEINALVVG-LRIQ  401 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~---~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~  401 (422)
                      ...             ...+||.|+|.||-=-.+.   - ++++..   .+|....        .=.++++.|.. ++.+
T Consensus       109 ~~~-------------~~~~fD~Ii~NPPyf~~~~---~-~~~~~~~~~Ar~e~~~--------~le~~i~~a~~~lk~~  163 (248)
T COG4123         109 KAL-------------VFASFDLIICNPPYFKQGS---R-LNENPLRAIARHEITL--------DLEDLIRAAAKLLKPG  163 (248)
T ss_pred             hcc-------------cccccCEEEeCCCCCCCcc---c-cCcChhhhhhhhhhcC--------CHHHHHHHHHHHccCC
Confidence            321             1346999999999988777   2 222211   1122111        11255665544 7899


Q ss_pred             cEEEe
Q 014571          402 KVLVL  406 (422)
Q Consensus       402 ~~~~~  406 (422)
                      |.+.+
T Consensus       164 G~l~~  168 (248)
T COG4123         164 GRLAF  168 (248)
T ss_pred             CEEEE
Confidence            99888

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=98.63  E-value=2e-07  Score=86.13  Aligned_cols=91  Identities=13%  Similarity=0.113  Sum_probs=73.9

Q ss_pred             EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      .++..-..+...+++.++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.+++|+++.++.+++++.+|+...
T Consensus        15 ~~~~~r~~~~~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~   93 (187)
T PRK08287         15 TKEEVRALALSKLELHRAKHLIDVGAGTGSVSIEAALQF-PSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIE   93 (187)
T ss_pred             chHHHHHHHHHhcCCCCCCEEEEECCcCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhh
Confidence            344444566677888899999999999999999999874 4689999999999999999999999988899988886321


Q ss_pred             hhccCCCCCCccccCCCCCCCCCceeecC
Q 014571          325 VRRKNESNDEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvDa  353 (422)
                                       ....||.|+++.
T Consensus        94 -----------------~~~~~D~v~~~~  105 (187)
T PRK08287         94 -----------------LPGKADAIFIGG  105 (187)
T ss_pred             -----------------cCcCCCEEEECC
Confidence                             123589999853

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=98.62  E-value=3.4e-07  Score=94.88  Aligned_cols=145  Identities=12%  Similarity=-0.000  Sum_probs=96.8

Q ss_pred             cceEEEeChhHHHHHHhcC-CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEe
Q 014571          240 EGEIFLQNLPSIVTAHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK  318 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~-p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~  318 (422)
                      +|.+........++-.+++ .+++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|+++.|. ++++++
T Consensus       229 p~vLIPRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~-p~a~VtAVDiS~~ALe~AreNa~~~g~-rV~fi~  306 (423)
T PRK14966        229 PNVLIPRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALER-PDAFVRASDISPPALETARKNAADLGA-RVEFAH  306 (423)
T ss_pred             CCccCCCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCC-cEEEEE
Confidence            4444444444455555553 4567899999999999999888764 457999999999999999999999886 799999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCch----hhhhhCCCCCccccccCcccchhHHHHHHHHHH
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVP----SIAAEGLNGDKSCKEKGRTCGECGMAQEEINAL  394 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l----~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~  394 (422)
                      +|......     +         ..+.||.|+++||-...+..    ...+-.|..  .|.. +.+  .+ ..=++|++.
T Consensus       307 gDl~e~~l-----~---------~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~--AL~g-G~d--GL-~~yr~Ii~~  366 (423)
T PRK14966        307 GSWFDTDM-----P---------SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQI--ALTD-FSD--GL-SCIRTLAQG  366 (423)
T ss_pred             cchhcccc-----c---------cCCCccEEEECCCCCCcchhhhcchhhhcCHHH--HhhC-CCc--hH-HHHHHHHHH
Confidence            99754311     0         12469999999998766541    111111111  1221 110  11 234577776


Q ss_pred             hc-cceeccEEEe
Q 014571          395 VV-GLRIQKVLVL  406 (422)
Q Consensus       395 a~-~lr~~~~~~~  406 (422)
                      +. -|+.+|.+++
T Consensus       367 a~~~LkpgG~lil  379 (423)
T PRK14966        367 APDRLAEGGFLLL  379 (423)
T ss_pred             HHHhcCCCcEEEE
Confidence            64 4899998877

>TIGR00095 RNA methyltransferase, RsmD family

Probab=98.61  E-value=1.7e-07  Score=87.44  Aligned_cols=84  Identities=14%  Similarity=0.074  Sum_probs=68.8

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      +|.+|||+|||+|..++.+++..  ..+|+++|.++..++.+++|++..++. ++++++.|+.+......          
T Consensus        49 ~g~~vLDLfaGsG~lglea~srg--a~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~----------  116 (189)
T TIGR00095        49 QGAHLLDVFAGSGLLGEEALSRG--AKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLA----------  116 (189)
T ss_pred             CCCEEEEecCCCcHHHHHHHhCC--CCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhh----------
Confidence            58899999999999999999873  358999999999999999999999985 69999999976542210          


Q ss_pred             CCCCCCCCceeecCCccc
Q 014571          340 SKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg  357 (422)
                       .....||.|++|||-..
T Consensus       117 -~~~~~~dvv~~DPPy~~  133 (189)
T TIGR00095       117 -KKPTFDNVIYLDPPFFN  133 (189)
T ss_pred             -ccCCCceEEEECcCCCC
Confidence             00124899999999864

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.60  E-value=3.7e-07  Score=93.88  Aligned_cols=133  Identities=11%  Similarity=0.067  Sum_probs=97.9

Q ss_pred             EEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       244 ~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      +++|..  -....+.+..+..+||+|||+|..+.++|... +...++|+|+++.+++.+.+++.+.|++|+.++++|+..
T Consensus       107 ~~~d~~--~~~~~~~~~~~p~vLEIGcGsG~~ll~lA~~~-P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~  183 (390)
T PRK14121        107 YILDID--NFLDFISKNQEKILIEIGFGSGRHLLYQAKNN-PNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARL  183 (390)
T ss_pred             ccCCHH--HHHHHhcCCCCCeEEEEcCcccHHHHHHHHhC-CCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHH
Confidence            366754  23344556678899999999999999999986 568999999999999999999999999999999999987


Q ss_pred             hhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceecc
Q 014571          324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQK  402 (422)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~  402 (422)
                      +....             ..+.||.|.+-.|+              -   |....-  +++  .|.+.|+.+.. |+.+|
T Consensus       184 ll~~~-------------~~~s~D~I~lnFPd--------------P---W~KkrH--RRl--v~~~fL~e~~RvLkpGG  229 (390)
T PRK14121        184 LLELL-------------PSNSVEKIFVHFPV--------------P---WDKKPH--RRV--ISEDFLNEALRVLKPGG  229 (390)
T ss_pred             hhhhC-------------CCCceeEEEEeCCC--------------C---ccccch--hhc--cHHHHHHHHHHHcCCCc
Confidence            54221             13568999874332              2   321111  122  36788888866 89999


Q ss_pred             EEEe-hhhHHHH
Q 014571          403 VLVL-TALIESF  413 (422)
Q Consensus       403 ~~~~-t~~~~~~  413 (422)
                      .+.+ |++-+-+
T Consensus       230 ~l~l~TD~~~y~  241 (390)
T PRK14121        230 TLELRTDSELYF  241 (390)
T ss_pred             EEEEEEECHHHH
Confidence            9888 6554433

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=98.60  E-value=3e-07  Score=85.86  Aligned_cols=116  Identities=13%  Similarity=0.102  Sum_probs=84.9

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      ..+.+|||+|||+|..+..+|+.. +.+.|+++|++..+++.+++++++.|+.|++++++|+..++....          
T Consensus        15 ~~~~~ilDiGcG~G~~~~~la~~~-p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~----------   83 (194)
T TIGR00091        15 NKAPLHLEIGCGKGRFLIDMAKQN-PDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFF----------   83 (194)
T ss_pred             CCCceEEEeCCCccHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhC----------
Confidence            345699999999999999999875 568999999999999999999999999999999999987642110          


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                        ..+.||.|+++.|.-                 |....-.  ..--.+.++++.+.. |+.+|.+.++
T Consensus        84 --~~~~~d~v~~~~pdp-----------------w~k~~h~--~~r~~~~~~l~~~~r~LkpgG~l~~~  131 (194)
T TIGR00091        84 --PDGSLSKVFLNFPDP-----------------WPKKRHN--KRRITQPHFLKEYANVLKKGGVIHFK  131 (194)
T ss_pred             --CCCceeEEEEECCCc-----------------CCCCCcc--ccccCCHHHHHHHHHHhCCCCEEEEE
Confidence              123589999876511                 2111000  000125667777654 8999999873

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK13795 hypothetical protein; Provisional

Probab=98.60  E-value=2.9e-07  Score=100.68  Aligned_cols=157  Identities=21%  Similarity=0.280  Sum_probs=106.2

Q ss_pred             CCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571          121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL  200 (422)
Q Consensus       121 ~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v  200 (422)
                      ...+.|+||++++++|++||+|++|||++++.++++||.|.|..                                ..+.
T Consensus       124 ~~~~~VvVd~ga~~~v~~Ga~l~~~GI~~~~~~i~~gd~V~I~~--------------------------------e~g~  171 (636)
T PRK13795        124 RLKKWVIVDKGALEPIKNGKNVLAPGVVEADLDIKKGDEVVVVT--------------------------------EDGE  171 (636)
T ss_pred             cCCcEEEEcccHHHHHHcCCcccCCceEEEeCCCCCCCEEEEEe--------------------------------CCCC
Confidence            35789999999999999999999999999999999999999993                                2356


Q ss_pred             EEEEccCccCHHHHhcccCcceeeccccccCCCCcccc--------ccceEEEeChhHHHH---HHhcCCCCCCeEEEec
Q 014571          201 YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDV--------LEGEIFLQNLPSIVT---AHALDPQKGERILDMC  269 (422)
Q Consensus       201 ~Vrvg~a~msreel~~~~~GiaV~~~~~~~~~p~~~~~--------~~G~~~~Qd~~S~lv---~~~L~p~pg~~VLD~C  269 (422)
                      .+++|+++|+.+++.+..+|.+++.....+..|.+...        +.....+++.-....   -..+.-. ++.|.  .
T Consensus       172 ~vavG~a~~s~~e~~~~~kG~~Vkvr~~~~~~~~l~~~~~~~~~~~~~n~~~l~~~~~~ai~~Ir~~~~~~-~~~v~--V  248 (636)
T PRK13795        172 VVGVGRAKMDGDDMIKRFRGRAVKVRKSGRGSPRLPPGRATLEDAIEANRKHLEEKEKEAVNFIRGVAEKY-NLPVS--V  248 (636)
T ss_pred             EEEEEEeccCHHHHhhccCCeEEEEEEcccCCcccCCCcCCHHHHHHhHHHHHHHHHHHHHHHHHHHHHHc-CCCEE--E
Confidence            89999999999999999999999887666555544311        112222232222211   1111111 33443  2


Q ss_pred             CCCChhHH----HHHhccCCCcEEEEEcCC---hHHHHHHHHHHHHhCCc
Q 014571          270 AAPGGKTT----AIASLLRDEGEVVAVDRS---HNKVMDIQKLAAEMGLK  312 (422)
Q Consensus       270 AgpGgKT~----~la~l~~~~g~V~A~D~s---~~rl~~l~~~l~r~g~~  312 (422)
                      |=.|||-.    +++......-.++-+|..   +.-++.+++.++++|++
T Consensus       249 a~SGGKDS~vll~L~~~a~~~~~vvfiDTg~efpet~e~v~~~~~~~gi~  298 (636)
T PRK13795        249 SFSGGKDSLVVLDLAREALKDFKAFFNNTGLEFPETVENVKEVAEEYGIE  298 (636)
T ss_pred             EecCcHHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHHHcCCc
Confidence            44577743    333332333466666633   55677788888888875

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=98.60  E-value=2.1e-07  Score=86.30  Aligned_cols=76  Identities=21%  Similarity=0.296  Sum_probs=64.7

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      +|.+|||++||+|.-+..++.. .+.++|+|+|.++.+++.+++++++.|+.+++++++|+....               
T Consensus        42 ~~~~vLDiGcGtG~~s~~la~~-~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~---------------  105 (181)
T TIGR00138        42 DGKKVIDIGSGAGFPGIPLAIA-RPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQ---------------  105 (181)
T ss_pred             CCCeEEEecCCCCccHHHHHHH-CCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhcc---------------
Confidence            4889999999999999988865 456899999999999999999999999988999999987641               


Q ss_pred             CCCCCCCceeecC
Q 014571          341 KDNNYITSQTSDS  353 (422)
Q Consensus       341 ~~~~~FD~VLvDa  353 (422)
                       ..+.||.|++++
T Consensus       106 -~~~~fD~I~s~~  117 (181)
T TIGR00138       106 -HEEQFDVITSRA  117 (181)
T ss_pred             -ccCCccEEEehh
Confidence             024689998863

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=98.59  E-value=3.2e-07  Score=85.62  Aligned_cols=77  Identities=29%  Similarity=0.286  Sum_probs=65.8

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      ++|.+|||+|||+|..+..++... +.++|+++|.++.+++.++++++..|+++++++++|+.....             
T Consensus        44 ~~g~~VLDiGcGtG~~al~la~~~-~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~-------------  109 (187)
T PRK00107         44 PGGERVLDVGSGAGFPGIPLAIAR-PELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQ-------------  109 (187)
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHC-CCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCC-------------
Confidence            348999999999999999999864 468999999999999999999999999889999999875321             


Q ss_pred             CCCCCCCCceeecC
Q 014571          340 SKDNNYITSQTSDS  353 (422)
Q Consensus       340 ~~~~~~FD~VLvDa  353 (422)
                         .+.||.|++++
T Consensus       110 ---~~~fDlV~~~~  120 (187)
T PRK00107        110 ---EEKFDVVTSRA  120 (187)
T ss_pred             ---CCCccEEEEcc
Confidence               24699999853

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=98.58  E-value=2.3e-07  Score=90.76  Aligned_cols=85  Identities=19%  Similarity=0.249  Sum_probs=68.5

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH---hCCcceEEEecchhhhhhcc
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE---MGLKCITTYKLDALKAVRRK  328 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r---~g~~nv~~~~~Da~~~~~~~  328 (422)
                      .+...+.++++++|||+|||+|..+..+++..++.++|+|+|+|+.+++.++++...   .+..+++++++|+..++.. 
T Consensus        64 ~~~~~~~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~-  142 (261)
T PLN02233         64 MAVSWSGAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFD-  142 (261)
T ss_pred             HHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCC-
Confidence            445567888999999999999999999998876678999999999999999887642   2346899999998765321 


Q ss_pred             CCCCCCccccCCCCCCCCCceee
Q 014571          329 NESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                                    .+.||.|++
T Consensus       143 --------------~~sfD~V~~  151 (261)
T PLN02233        143 --------------DCYFDAITM  151 (261)
T ss_pred             --------------CCCEeEEEE
Confidence                          346898875

>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional

Probab=98.57  E-value=1.1e-07  Score=103.70  Aligned_cols=73  Identities=19%  Similarity=0.337  Sum_probs=67.2

Q ss_pred             CCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEE
Q 014571          123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI  202 (422)
Q Consensus       123 ~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~V  202 (422)
                      .+.|+||++|++++.+||+||+|||++++.++++||+|.|..                                +.+.++
T Consensus       563 ~~~V~Vd~~a~~~v~~G~~v~apgVv~~d~~ir~gDeV~Vv~--------------------------------e~~~~l  610 (639)
T PRK13534        563 KYRVVVDKESEPFARKGKSVFAKFVIDCDEEIRPYDEVLVVN--------------------------------EDDELL  610 (639)
T ss_pred             CcEEEECCcchhhhhCCCcccCCcceecCCCCCCCCEEEEEe--------------------------------cCCcEE
Confidence            489999999999999999999999999999999999999992                                246799


Q ss_pred             EEccCccCHHHHhcccCcceeeccc
Q 014571          203 GQGTAMMSRAGIFRASEGIAVDMHN  227 (422)
Q Consensus       203 rvg~a~msreel~~~~~GiaV~~~~  227 (422)
                      ++|+++|+.++|.+..+|++++...
T Consensus       611 avG~A~~~~~em~~~~~G~avkvR~  635 (639)
T PRK13534        611 AYGKALLNGRELMEFNYGLAVKVRG  635 (639)
T ss_pred             EEEEEecCHHHHhhcCCceEEEEee
Confidence            9999999999999999999998653

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.56  E-value=3.6e-07  Score=84.54  Aligned_cols=90  Identities=12%  Similarity=0.091  Sum_probs=64.7

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCc--------EEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecch
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG--------EVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDA  321 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g--------~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da  321 (422)
                      ...+.+.++++|+.|||-+||+|+.....|....+..        .+++.|++++.++.+++|++..|+.. |.+.+.|+
T Consensus        18 ~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~   97 (179)
T PF01170_consen   18 AALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDA   97 (179)
T ss_dssp             HHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--G
T ss_pred             HHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecch
Confidence            3445677889999999999999988877766544333        49999999999999999999999854 89999999


Q ss_pred             hhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          322 LKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      ++++..               .+.||.|++|+|-
T Consensus        98 ~~l~~~---------------~~~~d~IvtnPPy  116 (179)
T PF01170_consen   98 RELPLP---------------DGSVDAIVTNPPY  116 (179)
T ss_dssp             GGGGGT---------------TSBSCEEEEE--S
T ss_pred             hhcccc---------------cCCCCEEEECcch
Confidence            987621               2458999999997

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=98.55  E-value=3e-07  Score=91.19  Aligned_cols=131  Identities=21%  Similarity=0.161  Sum_probs=91.5

Q ss_pred             cccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC--cceE
Q 014571          238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL--KCIT  315 (422)
Q Consensus       238 ~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~--~nv~  315 (422)
                      .+.|.|.=|=..-.++....   .|.+|||+||-+||.|.+.+.  ++..+|+++|.|..-++.+++|++..|+  ..++
T Consensus       103 qktGlFlDqR~nR~~v~~~~---~gkrvLnlFsYTGgfsv~Aa~--gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~  177 (286)
T PF10672_consen  103 QKTGLFLDQRENRKWVRKYA---KGKRVLNLFSYTGGFSVAAAA--GGAKEVVSVDSSKRALEWAKENAALNGLDLDRHR  177 (286)
T ss_dssp             SSTSS-GGGHHHHHHHHHHC---TTCEEEEET-TTTHHHHHHHH--TTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEE
T ss_pred             CcceEcHHHHhhHHHHHHHc---CCCceEEecCCCCHHHHHHHH--CCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceE
Confidence            36888888877777766653   588999999999999998765  3445899999999999999999999987  4699


Q ss_pred             EEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHh
Q 014571          316 TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALV  395 (422)
Q Consensus       316 ~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a  395 (422)
                      +++.|+.+......            ..++||.|++|||.-.-+.             |..        .+--.+|+..+
T Consensus       178 ~~~~Dvf~~l~~~~------------~~~~fD~IIlDPPsF~k~~-------------~~~--------~~~y~~L~~~a  224 (286)
T PF10672_consen  178 FIQGDVFKFLKRLK------------KGGRFDLIILDPPSFAKSK-------------FDL--------ERDYKKLLRRA  224 (286)
T ss_dssp             EEES-HHHHHHHHH------------HTT-EEEEEE--SSEESST-------------CEH--------HHHHHHHHHHH
T ss_pred             EEecCHHHHHHHHh------------cCCCCCEEEECCCCCCCCH-------------HHH--------HHHHHHHHHHH
Confidence            99999988654211            1357999999999664332             221        12233566666


Q ss_pred             cc-ceeccEEEe
Q 014571          396 VG-LRIQKVLVL  406 (422)
Q Consensus       396 ~~-lr~~~~~~~  406 (422)
                      .. ++.+|.|+.
T Consensus       225 ~~ll~~gG~l~~  236 (286)
T PF10672_consen  225 MKLLKPGGLLLT  236 (286)
T ss_dssp             HHTEEEEEEEEE
T ss_pred             HHhcCCCCEEEE
Confidence            55 788998887

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=98.54  E-value=3.8e-07  Score=89.10  Aligned_cols=82  Identities=17%  Similarity=0.164  Sum_probs=69.3

Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      ...+++|++|||++||+|.-+..++..++..++|+++|+++.+++.++++.+..|+.+++++.+|....+.         
T Consensus        72 ~~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~---------  142 (272)
T PRK11873         72 LAELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPV---------  142 (272)
T ss_pred             hccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCC---------
Confidence            35678999999999999988888888877778999999999999999999999999899999998765421         


Q ss_pred             cccCCCCCCCCCceeec
Q 014571          336 NMCNSKDNNYITSQTSD  352 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvD  352 (422)
                            ..+.||.|+.+
T Consensus       143 ------~~~~fD~Vi~~  153 (272)
T PRK11873        143 ------ADNSVDVIISN  153 (272)
T ss_pred             ------CCCceeEEEEc
Confidence                  12468988865

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=98.53  E-value=2.9e-07  Score=86.78  Aligned_cols=86  Identities=21%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .++|++|+||+||-|..|+++|.. +....|+|+|+++.-++.+++|++..++++ |.++++|++.+..           
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~-~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~-----------  166 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKH-GKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP-----------  166 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHH-T-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG--------------
T ss_pred             CCcceEEEEccCCccHHHHHHhhh-cCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC-----------
Confidence            678999999999999999999985 345689999999999999999999999866 8899999998753           


Q ss_pred             cCCCCCCCCCceeecCCccccCch
Q 014571          338 CNSKDNNYITSQTSDSMKLHKEVP  361 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg~G~l  361 (422)
                           ...||+|+.+-|=++...+
T Consensus       167 -----~~~~drvim~lp~~~~~fl  185 (200)
T PF02475_consen  167 -----EGKFDRVIMNLPESSLEFL  185 (200)
T ss_dssp             -----TT-EEEEEE--TSSGGGGH
T ss_pred             -----ccccCEEEECChHHHHHHH
Confidence                 2458999999997776663

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.53  E-value=4e-07  Score=87.76  Aligned_cols=96  Identities=15%  Similarity=0.138  Sum_probs=77.8

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhcc
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRK  328 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~  328 (422)
                      .++...++...++.+|||+|+|.|.-++.++..+.+.|+|+++|+++.+++.+++|+++.|+. +|+++.+|+.+.....
T Consensus        57 g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l  136 (234)
T PLN02781         57 GLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQL  136 (234)
T ss_pred             HHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHH
Confidence            345555666677889999999999999999998888899999999999999999999999985 6999999998764322


Q ss_pred             CCCCCCccccCCCCCCCCCceeecCC
Q 014571          329 NESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      ...         ...+.||.|++|++
T Consensus       137 ~~~---------~~~~~fD~VfiDa~  153 (234)
T PLN02781        137 LNN---------DPKPEFDFAFVDAD  153 (234)
T ss_pred             HhC---------CCCCCCCEEEECCC
Confidence            100         01356999999975

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.52  E-value=6.3e-07  Score=83.17  Aligned_cols=100  Identities=16%  Similarity=0.048  Sum_probs=75.1

Q ss_pred             EEEeChhHHHHH--HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecc
Q 014571          243 IFLQNLPSIVTA--HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD  320 (422)
Q Consensus       243 ~~~Qd~~S~lv~--~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~D  320 (422)
                      -.+-+.++.++.  +..+.-.|.+|+|+|||+|..++..+-+  +..+|+|+|+++..++.+++|+.+ +..+|.++..|
T Consensus        25 ~Tp~~~Aa~il~~a~~~g~l~g~~V~DlG~GTG~La~ga~~l--Ga~~V~~vdiD~~a~ei~r~N~~~-l~g~v~f~~~d  101 (198)
T COG2263          25 RTPAPLAAYILWVAYLRGDLEGKTVLDLGAGTGILAIGAALL--GASRVLAVDIDPEALEIARANAEE-LLGDVEFVVAD  101 (198)
T ss_pred             CCChHHHHHHHHHHHHcCCcCCCEEEEcCCCcCHHHHHHHhc--CCcEEEEEecCHHHHHHHHHHHHh-hCCceEEEEcc
Confidence            333444444433  3334557889999999999887766655  457999999999999999999999 44679999999


Q ss_pred             hhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCC
Q 014571          321 ALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLN  369 (422)
Q Consensus       321 a~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~  369 (422)
                      .+++                  ...||.|+-+||=   |.   .+||+|
T Consensus       102 v~~~------------------~~~~dtvimNPPF---G~---~~rhaD  126 (198)
T COG2263         102 VSDF------------------RGKFDTVIMNPPF---GS---QRRHAD  126 (198)
T ss_pred             hhhc------------------CCccceEEECCCC---cc---ccccCC
Confidence            8764                  3567899999994   55   456655

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=98.50  E-value=6.4e-07  Score=83.32  Aligned_cols=83  Identities=22%  Similarity=0.252  Sum_probs=69.7

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCcccc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      -.|.+|||++||+|.-.+..++.  +..+++.+|.+.+-+..+++|++.+|+ .+++++..|+..+.....         
T Consensus        42 i~g~~~LDlFAGSGaLGlEAlSR--GA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~---------  110 (187)
T COG0742          42 IEGARVLDLFAGSGALGLEALSR--GAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG---------  110 (187)
T ss_pred             cCCCEEEEecCCccHhHHHHHhC--CCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC---------
Confidence            37899999999999999888876  467999999999999999999999996 568999999986543221         


Q ss_pred             CCCCCCCCCceeecCCcc
Q 014571          339 NSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCS  356 (422)
                         ..+.||.|++|||--
T Consensus       111 ---~~~~FDlVflDPPy~  125 (187)
T COG0742         111 ---TREPFDLVFLDPPYA  125 (187)
T ss_pred             ---CCCcccEEEeCCCCc
Confidence               123599999999987

>PLN02476 O-methyltransferase

Probab=98.49  E-value=7.2e-07  Score=88.13  Aligned_cols=102  Identities=16%  Similarity=0.147  Sum_probs=83.4

Q ss_pred             EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhh
Q 014571          245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK  323 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~  323 (422)
                      +.....++...++...++.+|||++++.|.-|+.+|..+++.|+|+++|.++++++.+++++++.|+. +|+++.+|+.+
T Consensus       102 v~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e  181 (278)
T PLN02476        102 VSPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAE  181 (278)
T ss_pred             cCHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34445566666777778899999999999999999999988899999999999999999999999995 79999999988


Q ss_pred             hhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      ........         ...+.||.|++|++=
T Consensus       182 ~L~~l~~~---------~~~~~FD~VFIDa~K  204 (278)
T PLN02476        182 SLKSMIQN---------GEGSSYDFAFVDADK  204 (278)
T ss_pred             HHHHHHhc---------ccCCCCCEEEECCCH
Confidence            65432100         013579999999984

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=98.48  E-value=7.1e-07  Score=89.99  Aligned_cols=123  Identities=17%  Similarity=0.136  Sum_probs=95.4

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec-chhhhhhcc
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL-DALKAVRRK  328 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~-Da~~~~~~~  328 (422)
                      |-..+.+..+++|+.|||=.||+||......- |  .+++++.|++..|++-++.|++.+|++...+... |+++++.+ 
T Consensus       186 AR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl-~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~-  261 (347)
T COG1041         186 ARAMVNLARVKRGELVLDPFCGTGGILIEAGL-M--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLR-  261 (347)
T ss_pred             HHHHHHHhccccCCEeecCcCCccHHHHhhhh-c--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCC-
Confidence            34556777899999999999999997766544 4  4799999999999999999999999988877777 99987632 


Q ss_pred             CCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          329 NESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                                    ...||.|.+|||---.-.   .             +.  ..+.++=.++|+.+.. |+.+|.+|+.
T Consensus       262 --------------~~~vdaIatDPPYGrst~---~-------------~~--~~l~~Ly~~~le~~~evLk~gG~~vf~  309 (347)
T COG1041         262 --------------DNSVDAIATDPPYGRSTK---I-------------KG--EGLDELYEEALESASEVLKPGGRIVFA  309 (347)
T ss_pred             --------------CCccceEEecCCCCcccc---c-------------cc--ccHHHHHHHHHHHHHHHhhcCcEEEEe
Confidence                          235899999999743332   0             11  1266677888888866 7888989885


Q ss_pred             h
Q 014571          408 A  408 (422)
Q Consensus       408 ~  408 (422)
                      +
T Consensus       310 ~  310 (347)
T COG1041         310 A  310 (347)
T ss_pred             c
Confidence            4

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=98.47  E-value=6e-07  Score=92.56  Aligned_cols=93  Identities=19%  Similarity=0.175  Sum_probs=74.1

Q ss_pred             EeChhHHHHHHhcCCC-CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          245 LQNLPSIVTAHALDPQ-KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p~-pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      -+|+.. +++..+... ++.+|||++||.|..++.+|...+ ..+|+++|+++..++.+++|++..|++++++++.|+..
T Consensus        41 nrdl~~-~v~~~~~~~~~~~~vLDl~aGsG~~~l~~a~~~~-~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~  118 (382)
T PRK04338         41 NRDISV-LVLRAFGPKLPRESVLDALSASGIRGIRYALETG-VEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANA  118 (382)
T ss_pred             hhhHHH-HHHHHHHhhcCCCEEEECCCcccHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHH
Confidence            345543 334444433 568999999999999999988754 35899999999999999999999999989999999987


Q ss_pred             hhhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      +...               ...||.|++|||
T Consensus       119 ~l~~---------------~~~fD~V~lDP~  134 (382)
T PRK04338        119 LLHE---------------ERKFDVVDIDPF  134 (382)
T ss_pred             HHhh---------------cCCCCEEEECCC
Confidence            6421               134899999999

>PRK13794 hypothetical protein; Provisional

Probab=98.47  E-value=8.5e-07  Score=93.98  Aligned_cols=163  Identities=22%  Similarity=0.284  Sum_probs=106.4

Q ss_pred             CCCEEEEccccHHHHH-cCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571          122 PPKEVIVSRKCAEAVL-RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL  200 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVl-rGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v  200 (422)
                      ..+.|+||++++++|+ +|++||+|||++++.++++||.|.|..                                ..+.
T Consensus       123 ~~~~V~Vd~ga~~~v~~~G~~v~~~GV~~~~~~i~~gd~V~Iv~--------------------------------~~g~  170 (479)
T PRK13794        123 KKKFIVVKDDVPKFIRNKGASVLRPGVAEASEDIEEGDDVIILD--------------------------------ENGD  170 (479)
T ss_pred             CCcEEEECccHHHHHHhCCCeecCCceEEecCCcCCCCEEEEEc--------------------------------CCCc
Confidence            3578999999999999 999999999999999999999999992                                2456


Q ss_pred             EEEEccCccCHHHHhcccCcceeeccccc----cCC----CCcc----c-cccceEEEeChhH---HHHHHhcCCCCCCe
Q 014571          201 YIGQGTAMMSRAGIFRASEGIAVDMHNRI----FQL----PSFY----D-VLEGEIFLQNLPS---IVTAHALDPQKGER  264 (422)
Q Consensus       201 ~Vrvg~a~msreel~~~~~GiaV~~~~~~----~~~----p~~~----~-~~~G~~~~Qd~~S---~lv~~~L~p~pg~~  264 (422)
                      .+++|++.++.+++....+|++|+.....    ++.    +.+.    + ++...-.++....   .+.-..++ .-+.+
T Consensus       171 ~iavG~a~~s~~ei~~~~~G~~Vkvr~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~l~~~~~~a~~~i~~~~~-~~~~~  249 (479)
T PRK13794        171 VVGVGRARMSYEEIVNMEKGMVVKVRKSEEPKNSNILSEYGPGEETWKDMVEANKNVLDKYERNSIGFIRNTAE-KINKP  249 (479)
T ss_pred             EEEEEEeecCHHHHHhccCceEEEEEeccCCcccccccccCCcCccHHHHHHhhHHHHHHHHHHHHHHHHHHHH-hcCCC
Confidence            99999999999999999999998875421    111    1111    1 1111112222222   12222221 12344


Q ss_pred             EEEecCCCChhHH----HHHhcc-CCCcEEEEEcCC---hHHHHHHHHHHHHhCCcceEEEecc
Q 014571          265 ILDMCAAPGGKTT----AIASLL-RDEGEVVAVDRS---HNKVMDIQKLAAEMGLKCITTYKLD  320 (422)
Q Consensus       265 VLD~CAgpGgKT~----~la~l~-~~~g~V~A~D~s---~~rl~~l~~~l~r~g~~nv~~~~~D  320 (422)
                      ++  .|=.|||-.    +++... +..-.++-+|.-   +.-++.+++..+++|++ +..+..+
T Consensus       250 v~--vs~SGGKDS~v~L~L~~~~~~~~~~vvfiDTG~efpet~e~i~~~~~~~gl~-i~~~~~~  310 (479)
T PRK13794        250 VT--VAYSGGKDSLATLLLALKALGINFPVLFNDTGLEFPETLENVEDVEKHYGLE-IIRTKSE  310 (479)
T ss_pred             EE--EEecchHHHHHHHHHHHHHhCCCeEEEEEECCCCChHHHHHHHHHHHhcCCc-EEEEchH
Confidence            44  344588854    333222 345677777743   56677778888888875 4444433

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.46  E-value=8e-07  Score=91.43  Aligned_cols=121  Identities=14%  Similarity=0.050  Sum_probs=90.8

Q ss_pred             ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC---cceEEEecchhh
Q 014571          247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL---KCITTYKLDALK  323 (422)
Q Consensus       247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~---~nv~~~~~Da~~  323 (422)
                      |.+|.+....+....+.+|||+|||+|--+..+++.. +..+|+++|.|+..++.+++|++..+.   .+++++..|+..
T Consensus       214 D~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~-P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~  292 (378)
T PRK15001        214 DIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS  292 (378)
T ss_pred             ChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccc
Confidence            7888888888877667899999999999999999874 568999999999999999999988764   367888777643


Q ss_pred             hhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhc-cceecc
Q 014571          324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVV-GLRIQK  402 (422)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~-~lr~~~  402 (422)
                      ..                ....||.|+++||-.....             +..      .   .-.++++.+. .|+.+|
T Consensus       293 ~~----------------~~~~fDlIlsNPPfh~~~~-------------~~~------~---ia~~l~~~a~~~LkpGG  334 (378)
T PRK15001        293 GV----------------EPFRFNAVLCNPPFHQQHA-------------LTD------N---VAWEMFHHARRCLKING  334 (378)
T ss_pred             cC----------------CCCCEEEEEECcCcccCcc-------------CCH------H---HHHHHHHHHHHhcccCC
Confidence            11                1246999999999753222             100      1   1235666664 378888


Q ss_pred             EEEe
Q 014571          403 VLVL  406 (422)
Q Consensus       403 ~~~~  406 (422)
                      .+.+
T Consensus       335 ~L~i  338 (378)
T PRK15001        335 ELYI  338 (378)
T ss_pred             EEEE
Confidence            8776

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=98.46  E-value=9.3e-07  Score=82.75  Aligned_cols=73  Identities=18%  Similarity=0.192  Sum_probs=63.2

Q ss_pred             hhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       248 ~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      .++..+...+...++.+|||++||+|.-+..+|+.   ..+|+|+|+|+.+++.++++++..+++++.+.+.|...
T Consensus        17 ~~~~~l~~~l~~~~~~~vLDiGcG~G~~a~~La~~---g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~   89 (197)
T PRK11207         17 RTHSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNN   89 (197)
T ss_pred             CChHHHHHhcccCCCCcEEEECCCCCHHHHHHHHC---CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhh
Confidence            34556677778888899999999999999999986   35899999999999999999999898889988888654

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=98.44  E-value=9e-07  Score=80.61  Aligned_cols=85  Identities=15%  Similarity=0.091  Sum_probs=70.6

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      .+..+++.++++|||+|||+|..|..+++.   .++|+|+|+++.+++.+++++..  ..+++++.+|+.+....     
T Consensus         5 i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~---~~~v~~vE~~~~~~~~~~~~~~~--~~~v~ii~~D~~~~~~~-----   74 (169)
T smart00650        5 IVRAANLRPGDTVLEIGPGKGALTEELLER---AARVTAIEIDPRLAPRLREKFAA--ADNLTVIHGDALKFDLP-----   74 (169)
T ss_pred             HHHhcCCCCcCEEEEECCCccHHHHHHHhc---CCeEEEEECCHHHHHHHHHHhcc--CCCEEEEECchhcCCcc-----
Confidence            456678889999999999999999999987   36899999999999999998864  45799999999875321     


Q ss_pred             CCccccCCCCCCCCCceeecCCccc
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                                ...||.|+.++|-.-
T Consensus        75 ----------~~~~d~vi~n~Py~~   89 (169)
T smart00650       75 ----------KLQPYKVVGNLPYNI   89 (169)
T ss_pred             ----------ccCCCEEEECCCccc
Confidence                      124899999999764

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.43  E-value=9.9e-07  Score=87.35  Aligned_cols=144  Identities=19%  Similarity=0.117  Sum_probs=97.4

Q ss_pred             ccceEEEeChhHHHHHHhc-CCCCCC-eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEE
Q 014571          239 LEGEIFLQNLPSIVTAHAL-DPQKGE-RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT  316 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L-~p~pg~-~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~  316 (422)
                      .++-+.+....-.++-.++ ...... +|||+|+|+|--+..++.... ...|+|+|+|+.-++.+++|++++|+.++.+
T Consensus        86 ~~~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~-~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~  164 (280)
T COG2890          86 DEGVLIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGP-DAEVIAVDISPDALALARENAERNGLVRVLV  164 (280)
T ss_pred             CCCceecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCc-CCeEEEEECCHHHHHHHHHHHHHcCCccEEE
Confidence            4666777766666666644 222222 799999999999999998753 4799999999999999999999999877666


Q ss_pred             EecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc---h-hhhhhCCCCCccccccCcccchhHHHHHHHH
Q 014571          317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV---P-SIAAEGLNGDKSCKEKGRTCGECGMAQEEIN  392 (422)
Q Consensus       317 ~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~---l-~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL  392 (422)
                      +..|....                 ..+.||.|++.||---.-.   . +.++..|. ..-|....    .+. .=++|+
T Consensus       165 ~~~dlf~~-----------------~~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~-~Al~~g~d----Gl~-~~~~i~  221 (280)
T COG2890         165 VQSDLFEP-----------------LRGKFDLIVSNPPYIPAEDPELLPEVVRYEPL-LALVGGGD----GLE-VYRRIL  221 (280)
T ss_pred             Eeeecccc-----------------cCCceeEEEeCCCCCCCcccccChhhhccCHH-HHHccCcc----HHH-HHHHHH
Confidence            66654332                 2347999999999987652   1 11222222 12233321    122 445677


Q ss_pred             HHhcc-ceeccEEEe
Q 014571          393 ALVVG-LRIQKVLVL  406 (422)
Q Consensus       393 ~~a~~-lr~~~~~~~  406 (422)
                      ..+.. ++.+|++++
T Consensus       222 ~~a~~~l~~~g~l~l  236 (280)
T COG2890         222 GEAPDILKPGGVLIL  236 (280)
T ss_pred             HhhHHHcCCCcEEEE
Confidence            76644 566788887

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.43  E-value=9e-07  Score=83.85  Aligned_cols=113  Identities=17%  Similarity=0.107  Sum_probs=74.0

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      .++|.+|||+|||||+.|..+++..++.+.|+|+|+++-           ....+++++++|.+..........      
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~-----------~~~~~v~~i~~D~~~~~~~~~i~~------  111 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM-----------DPIVGVDFLQGDFRDELVLKALLE------  111 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc-----------cCCCCcEEEecCCCChHHHHHHHH------
Confidence            467899999999999999999999877789999999981           134678999999876421000000      


Q ss_pred             CCCCCCCCCceeecC-CccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          339 NSKDNNYITSQTSDS-MKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       339 ~~~~~~~FD~VLvDa-PCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                       ......||.|+.|. |.- .|.       |      ..+..   ....+..++|+.+.. |+.+|.+++
T Consensus       112 -~~~~~~~D~V~S~~~~~~-~g~-------~------~~d~~---~~~~~~~~~L~~~~~~LkpGG~~vi  163 (209)
T PRK11188        112 -RVGDSKVQVVMSDMAPNM-SGT-------P------AVDIP---RAMYLVELALDMCRDVLAPGGSFVV  163 (209)
T ss_pred             -HhCCCCCCEEecCCCCcc-CCC-------h------HHHHH---HHHHHHHHHHHHHHHHcCCCCEEEE
Confidence             00135689999975 322 222       0      00001   111223467777765 899999998

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.42  E-value=1.4e-06  Score=92.92  Aligned_cols=126  Identities=13%  Similarity=0.072  Sum_probs=87.2

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      ++.+|||+|||+|..+..++... +.++|+|+|+|+..++.+++|+++.|+. ++.++++|.....              
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~-p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~--------------  202 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCEL-PNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENI--------------  202 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhC--------------
Confidence            45799999999999999998875 3579999999999999999999999974 5899998875321              


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccc--hhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCG--ECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~--~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                        ..+.||.|+++||-........+  .++. ..+.|...-..  +=-..=+.|++.+.. |+.+|.+++
T Consensus       203 --~~~~fDlIvsNPPYi~~~~~~~l--~~~v-~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~l  267 (506)
T PRK01544        203 --EKQKFDFIVSNPPYISHSEKSEM--AIET-INYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIIL  267 (506)
T ss_pred             --cCCCccEEEECCCCCCchhhhhc--Cchh-hccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEE
Confidence              02469999999999886552111  1111 11222110000  011234567777754 799999987

>PRK10742 putative methyltransferase; Provisional

Probab=98.41  E-value=1.4e-06  Score=84.48  Aligned_cols=92  Identities=18%  Similarity=0.111  Sum_probs=78.4

Q ss_pred             HHHHHHhcCCCCCC--eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh------CC---cceEEEe
Q 014571          250 SIVTAHALDPQKGE--RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM------GL---KCITTYK  318 (422)
Q Consensus       250 S~lv~~~L~p~pg~--~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~------g~---~nv~~~~  318 (422)
                      .+..+.++.+++|.  +|||++||.|.-++.++++   .++|+++|.++.-...++++++++      +.   .+++++.
T Consensus        75 ~~~l~kAvglk~g~~p~VLD~TAGlG~Da~~las~---G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~  151 (250)
T PRK10742         75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_pred             ccHHHHHhCCCCCCCCEEEECCCCccHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEe
Confidence            46788999999999  9999999999999999998   467999999999999999999996      42   5799999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcccc
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                      +|+..+....              ...||.|.+|||-...
T Consensus       152 ~da~~~L~~~--------------~~~fDVVYlDPMfp~~  177 (250)
T PRK10742        152 ASSLTALTDI--------------TPRPQVVYLDPMFPHK  177 (250)
T ss_pred             CcHHHHHhhC--------------CCCCcEEEECCCCCCC
Confidence            9998876421              2359999999987663

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.39  E-value=2.9e-06  Score=86.37  Aligned_cols=90  Identities=14%  Similarity=0.140  Sum_probs=73.3

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      .|.+|.+....+......+|||++||.|..+..+++.. +..+|+++|+++.+++.+++++++.++. .+++..|.... 
T Consensus       181 lD~gt~lLl~~l~~~~~g~VLDlGCG~G~ls~~la~~~-p~~~v~~vDis~~Al~~A~~nl~~n~l~-~~~~~~D~~~~-  257 (342)
T PRK09489        181 LDVGSQLLLSTLTPHTKGKVLDVGCGAGVLSAVLARHS-PKIRLTLSDVSAAALESSRATLAANGLE-GEVFASNVFSD-  257 (342)
T ss_pred             CCHHHHHHHHhccccCCCeEEEeccCcCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCC-CEEEEcccccc-
Confidence            37788888888876666799999999999999999874 4578999999999999999999998875 45666665321 


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                                      ..+.||.|++++|
T Consensus       258 ----------------~~~~fDlIvsNPP  270 (342)
T PRK09489        258 ----------------IKGRFDMIISNPP  270 (342)
T ss_pred             ----------------cCCCccEEEECCC
Confidence                            1356999999988

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=98.37  E-value=7.9e-07  Score=73.78  Aligned_cols=71  Identities=23%  Similarity=0.171  Sum_probs=57.4

Q ss_pred             EEEecCCCChhHHHHHhcc--CCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571          265 ILDMCAAPGGKTTAIASLL--RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD  342 (422)
Q Consensus       265 VLD~CAgpGgKT~~la~l~--~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~  342 (422)
                      |||+|||+|..+..++...  ++..+++++|+|+.+++.++++.+..+. +++++++|..+++..               
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~-~~~~~~~D~~~l~~~---------------   64 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP-KVRFVQADARDLPFS---------------   64 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT-TSEEEESCTTCHHHH---------------
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC-ceEEEECCHhHCccc---------------
Confidence            7999999999999999987  2337999999999999999999998877 799999999886431               


Q ss_pred             CCCCCceee
Q 014571          343 NNYITSQTS  351 (422)
Q Consensus       343 ~~~FD~VLv  351 (422)
                      .+.||.|++
T Consensus        65 ~~~~D~v~~   73 (101)
T PF13649_consen   65 DGKFDLVVC   73 (101)
T ss_dssp             SSSEEEEEE
T ss_pred             CCCeeEEEE
Confidence            346899987

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=98.31  E-value=2.4e-06  Score=87.90  Aligned_cols=97  Identities=19%  Similarity=0.111  Sum_probs=76.0

Q ss_pred             eChhHHHHHHhcCCCCC---CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchh
Q 014571          246 QNLPSIVTAHALDPQKG---ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL  322 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg---~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~  322 (422)
                      -|++-.++..+.+...+   -+|||++||+|.-++.++....+..+|+++|+++..++.+++|++..++.++++++.|+.
T Consensus        26 RDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~  105 (374)
T TIGR00308        26 RDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAA  105 (374)
T ss_pred             ccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHH
Confidence            35544333333333344   499999999999999999875445689999999999999999999999989999999998


Q ss_pred             hhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          323 KAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      .+....              ...||.|.+||+=|
T Consensus       106 ~~l~~~--------------~~~fDvIdlDPfGs  125 (374)
T TIGR00308       106 NVLRYR--------------NRKFHVIDIDPFGT  125 (374)
T ss_pred             HHHHHh--------------CCCCCEEEeCCCCC
Confidence            875321              24699999999843

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PLN02244 tocopherol O-methyltransferase

Probab=98.30  E-value=3.2e-06  Score=85.83  Aligned_cols=75  Identities=23%  Similarity=0.237  Sum_probs=63.7

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCcccc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +++.+|||++||+|+.+.++++..  .++|+++|+++.+++.++++++..|+ +++++.++|+...+..           
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~--g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~-----------  183 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY--GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFE-----------  183 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCC-----------
Confidence            688999999999999999999875  46999999999999999999999887 4699999998764321           


Q ss_pred             CCCCCCCCCceee
Q 014571          339 NSKDNNYITSQTS  351 (422)
Q Consensus       339 ~~~~~~~FD~VLv  351 (422)
                          .+.||.|++
T Consensus       184 ----~~~FD~V~s  192 (340)
T PLN02244        184 ----DGQFDLVWS  192 (340)
T ss_pred             ----CCCccEEEE
Confidence                346888876

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.27  E-value=4.4e-06  Score=82.89  Aligned_cols=92  Identities=16%  Similarity=0.142  Sum_probs=78.9

Q ss_pred             ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571          247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR  326 (422)
Q Consensus       247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~  326 (422)
                      |.+|.+...-|...++.+|||+|||-|-.+..+|+.. +..+|+-+|.+..-++..++|++..++++..++..|...   
T Consensus       144 D~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~-p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~---  219 (300)
T COG2813         144 DKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKS-PQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYE---  219 (300)
T ss_pred             ChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhC-CCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEecccc---
Confidence            9999999999999988899999999999999999985 478999999999999999999999999887555544322   


Q ss_pred             ccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          327 RKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                                    ...++||.|++.||=.
T Consensus       220 --------------~v~~kfd~IisNPPfh  235 (300)
T COG2813         220 --------------PVEGKFDLIISNPPFH  235 (300)
T ss_pred             --------------cccccccEEEeCCCcc
Confidence                          1134899999998854

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.26  E-value=7.7e-06  Score=64.89  Aligned_cols=102  Identities=25%  Similarity=0.173  Sum_probs=75.7

Q ss_pred             eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCC
Q 014571          264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDN  343 (422)
Q Consensus       264 ~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~  343 (422)
                      +|+|++||+|..+..++.  .+..+++++|.++..+..+++..+..+..+++++..|......      .        ..
T Consensus         1 ~ildig~G~G~~~~~~~~--~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~--------~~   64 (107)
T cd02440           1 RVLDLGCGTGALALALAS--GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPP------E--------AD   64 (107)
T ss_pred             CeEEEcCCccHHHHHHhc--CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhcc------c--------cC
Confidence            589999999999998888  3467999999999999999875555566778999988876532      0        13


Q ss_pred             CCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          344 NYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       344 ~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                      ..||.|+++.+|...                          ...+..+++.+.. ++.+|.++++
T Consensus        65 ~~~d~i~~~~~~~~~--------------------------~~~~~~~l~~~~~~l~~~g~~~~~  103 (107)
T cd02440          65 ESFDVIISDPPLHHL--------------------------VEDLARFLEEARRLLKPGGVLVLT  103 (107)
T ss_pred             CceEEEEEccceeeh--------------------------hhHHHHHHHHHHHHcCCCCEEEEE
Confidence            458999998887653                          2244455555543 6788877765

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.26  E-value=1.9e-06  Score=81.60  Aligned_cols=88  Identities=16%  Similarity=0.209  Sum_probs=71.7

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .....+||+++++.|--|+.+|+.+++.|+|+++|+++.+.+.+++++++.|+. +|+++.+|+..........      
T Consensus        43 ~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~------  116 (205)
T PF01596_consen   43 LTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELAND------  116 (205)
T ss_dssp             HHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHT------
T ss_pred             hcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhc------
Confidence            345569999999999999999999988899999999999999999999999984 6999999998865432110      


Q ss_pred             cCCCCCCCCCceeecCCc
Q 014571          338 CNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPC  355 (422)
                         ...+.||.|++|+.=
T Consensus       117 ---~~~~~fD~VFiDa~K  131 (205)
T PF01596_consen  117 ---GEEGQFDFVFIDADK  131 (205)
T ss_dssp             ---TTTTSEEEEEEESTG
T ss_pred             ---cCCCceeEEEEcccc
Confidence               013579999999853

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=98.26  E-value=5.6e-06  Score=82.78  Aligned_cols=94  Identities=14%  Similarity=0.117  Sum_probs=77.3

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      +...|.+++|..++|+++|-||.|..|++.+++ |+|+|+|.++..++.++++++.++ .++.+++++...+....... 
T Consensus        12 vl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~-g~vigiD~D~~Al~~ak~~L~~~~-~R~~~i~~nF~~l~~~l~~~-   88 (305)
T TIGR00006        12 VVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGT-GRLIGIDRDPQAIAFAKERLSDFE-GRVVLIHDNFANFFEHLDEL-   88 (305)
T ss_pred             HHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCC-CEEEEEcCCHHHHHHHHHHHhhcC-CcEEEEeCCHHHHHHHHHhc-
Confidence            456778899999999999999999999998865 999999999999999999988764 56899998887764322110 


Q ss_pred             CCccccCCCCCCCCCceeecCCcccc
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                               ....+|.|+.|=-+|+.
T Consensus        89 ---------~~~~vDgIl~DLGvSS~  105 (305)
T TIGR00006        89 ---------LVTKIDGILVDLGVSSP  105 (305)
T ss_pred             ---------CCCcccEEEEeccCCHh
Confidence                     12458999999999986

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=98.25  E-value=5.5e-06  Score=79.12  Aligned_cols=95  Identities=20%  Similarity=0.166  Sum_probs=80.1

Q ss_pred             ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEe-cchhhh
Q 014571          247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYK-LDALKA  324 (422)
Q Consensus       247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~-~Da~~~  324 (422)
                      ...-++...++....+.+||+++.+.|--|+.||..++..|+++++|+++++.+.+++|+++.|+.+ |+.+. +|+...
T Consensus        45 ~e~g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~  124 (219)
T COG4122          45 PETGALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDV  124 (219)
T ss_pred             hhHHHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHH
Confidence            3344566667777788999999999999999999999878999999999999999999999999966 78888 598876


Q ss_pred             hhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          325 VRRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      ....             ..+.||.|+.|+-
T Consensus       125 l~~~-------------~~~~fDliFIDad  141 (219)
T COG4122         125 LSRL-------------LDGSFDLVFIDAD  141 (219)
T ss_pred             HHhc-------------cCCCccEEEEeCC
Confidence            5431             2467999999984

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=98.25  E-value=3.1e-06  Score=85.66  Aligned_cols=85  Identities=20%  Similarity=0.123  Sum_probs=71.9

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      ..+|++|+||.||-|-.|+.+|..-  ..+|+|+|+++.-++.|++|++..++.+ |.++++|++.+....         
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g--~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~---------  254 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKG--RPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPEL---------  254 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcC--CceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhcc---------
Confidence            3469999999999999999999984  3349999999999999999999999987 899999999876421         


Q ss_pred             cCCCCCCCCCceeecCCccccCc
Q 014571          338 CNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                            +.||+|+.--|=+....
T Consensus       255 ------~~aDrIim~~p~~a~~f  271 (341)
T COG2520         255 ------GVADRIIMGLPKSAHEF  271 (341)
T ss_pred             ------ccCCEEEeCCCCcchhh
Confidence                  45899999888665433

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.24  E-value=4.8e-06  Score=83.02  Aligned_cols=100  Identities=17%  Similarity=0.172  Sum_probs=79.7

Q ss_pred             ceEEEeC-hhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-CcceEEEe
Q 014571          241 GEIFLQN-LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-LKCITTYK  318 (422)
Q Consensus       241 G~~~~Qd-~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-~~nv~~~~  318 (422)
                      |.-++.| ---..++..+++.++++|||++||+|..|..+++.   ..+|+|+|+++..++.+++++...+ ..+++++.
T Consensus        15 GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~---~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~   91 (294)
T PTZ00338         15 GQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQL---AKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIE   91 (294)
T ss_pred             CccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHh---CCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEE
Confidence            4434433 33344666778899999999999999999999886   3589999999999999999998877 47899999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      +|+.+...                 ..||.|+.+.|-.-+.-
T Consensus        92 ~Dal~~~~-----------------~~~d~VvaNlPY~Istp  116 (294)
T PTZ00338         92 GDALKTEF-----------------PYFDVCVANVPYQISSP  116 (294)
T ss_pred             CCHhhhcc-----------------cccCEEEecCCcccCcH
Confidence            99976421                 24799999999986654

>PRK08317 hypothetical protein; Provisional

Probab=98.23  E-value=7.2e-06  Score=77.02  Aligned_cols=71  Identities=30%  Similarity=0.308  Sum_probs=59.0

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      ....+.+.++.+|||+|||+|..+..+++.+++.++++++|.++.+++.++++.. ....++.+...|....
T Consensus        11 ~~~~~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~-~~~~~~~~~~~d~~~~   81 (241)
T PRK08317         11 TFELLAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA-GLGPNVEFVRGDADGL   81 (241)
T ss_pred             HHHHcCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh-CCCCceEEEecccccC
Confidence            3456778899999999999999999999987667899999999999999988733 2335788888887653

>PHA03411 putative methyltransferase; Provisional

Probab=98.22  E-value=6.1e-06  Score=81.31  Aligned_cols=82  Identities=15%  Similarity=0.122  Sum_probs=65.8

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      +.++++.+|||+|||+|..+..++.... ..+|+++|+++.+++.+++++     .++.++++|+..+..          
T Consensus        60 ~~~~~~grVLDLGcGsGilsl~la~r~~-~~~V~gVDisp~al~~Ar~n~-----~~v~~v~~D~~e~~~----------  123 (279)
T PHA03411         60 IDAHCTGKVLDLCAGIGRLSFCMLHRCK-PEKIVCVELNPEFARIGKRLL-----PEAEWITSDVFEFES----------  123 (279)
T ss_pred             hccccCCeEEEcCCCCCHHHHHHHHhCC-CCEEEEEECCHHHHHHHHHhC-----cCCEEEECchhhhcc----------
Confidence            4566778999999999999998887643 369999999999999988763     468889999876421          


Q ss_pred             ccCCCCCCCCCceeecCCccccCc
Q 014571          337 MCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                            ...||.|+.++|--....
T Consensus       124 ------~~kFDlIIsNPPF~~l~~  141 (279)
T PHA03411        124 ------NEKFDVVISNPPFGKINT  141 (279)
T ss_pred             ------cCCCcEEEEcCCccccCc
Confidence                  246999999999987544

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.21  E-value=5.5e-06  Score=80.36  Aligned_cols=75  Identities=16%  Similarity=0.165  Sum_probs=62.8

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCcccc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      .++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.++++++..|+ .+++++++|+......           
T Consensus        43 ~~~~~vLDiGcG~G~~a~~la~~---g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~-----------  108 (255)
T PRK11036         43 PRPLRVLDAGGGEGQTAIKLAEL---GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQH-----------  108 (255)
T ss_pred             CCCCEEEEeCCCchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhh-----------
Confidence            56789999999999999999986   36899999999999999999999987 5799999998765311           


Q ss_pred             CCCCCCCCCceee
Q 014571          339 NSKDNNYITSQTS  351 (422)
Q Consensus       339 ~~~~~~~FD~VLv  351 (422)
                         ..+.||.|++
T Consensus       109 ---~~~~fD~V~~  118 (255)
T PRK11036        109 ---LETPVDLILF  118 (255)
T ss_pred             ---cCCCCCEEEe
Confidence               1346898886

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.21  E-value=1.2e-05  Score=79.83  Aligned_cols=88  Identities=14%  Similarity=0.070  Sum_probs=64.7

Q ss_pred             ChhHHHHHHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhh
Q 014571          247 NLPSIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK  323 (422)
Q Consensus       247 d~~S~lv~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~  323 (422)
                      .+...++..+++  ..+|.+|||+|||+|.-+..++.+ + ..+|+|+|+++.+++.+++|++..++.+ +.+...|...
T Consensus       143 h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~-g-~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~  220 (288)
T TIGR00406       143 HPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKL-G-AAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQ  220 (288)
T ss_pred             CHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEeccccc
Confidence            345555555554  568899999999999988877764 3 4699999999999999999999988754 5555544211


Q ss_pred             hhhccCCCCCCccccCCCCCCCCCceeecC
Q 014571          324 AVRRKNESNDEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDa  353 (422)
                                       ...+.||.|+++.
T Consensus       221 -----------------~~~~~fDlVvan~  233 (288)
T TIGR00406       221 -----------------PIEGKADVIVANI  233 (288)
T ss_pred             -----------------ccCCCceEEEEec
Confidence                             0134699999853

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PHA03412 putative methyltransferase; Provisional

Probab=98.21  E-value=2.9e-06  Score=81.84  Aligned_cols=93  Identities=18%  Similarity=0.174  Sum_probs=69.6

Q ss_pred             EEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccC--CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecc
Q 014571          243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR--DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD  320 (422)
Q Consensus       243 ~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~--~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~D  320 (422)
                      +.+.+.+..++..   ...+.+|||+|||+|..+..++..+.  +...|+|+|+++..++.+++|.     .++.++..|
T Consensus        34 fTP~~iAr~~~i~---~~~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-----~~~~~~~~D  105 (241)
T PHA03412         34 FTPIGLARDFTID---ACTSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-----PEATWINAD  105 (241)
T ss_pred             CCCHHHHHHHHHh---ccCCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc-----cCCEEEEcc
Confidence            4455555554433   33477999999999999999998753  3579999999999999999875     347788888


Q ss_pred             hhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccC
Q 014571          321 ALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKE  359 (422)
Q Consensus       321 a~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G  359 (422)
                      .....                ...+||.|+.+||-.-..
T Consensus       106 ~~~~~----------------~~~~FDlIIsNPPY~~~~  128 (241)
T PHA03412        106 ALTTE----------------FDTLFDMAISNPPFGKIK  128 (241)
T ss_pred             hhccc----------------ccCCccEEEECCCCCCcc
Confidence            76421                124699999999987643

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.20  E-value=5.8e-06  Score=81.66  Aligned_cols=74  Identities=22%  Similarity=0.146  Sum_probs=65.6

Q ss_pred             hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhh
Q 014571          249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKA  324 (422)
Q Consensus       249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~  324 (422)
                      .--.+...|.++||++|||++||-|+-+..+|+..  ..+|+++++|++..+.++++++..|++ +|++...|-+.+
T Consensus        60 k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y--~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~  134 (283)
T COG2230          60 KLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEY--GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDF  134 (283)
T ss_pred             HHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHc--CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEecccccc
Confidence            33456777889999999999999999999999986  479999999999999999999999997 899988886654

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=98.19  E-value=7.7e-06  Score=79.14  Aligned_cols=74  Identities=11%  Similarity=0.116  Sum_probs=60.1

Q ss_pred             EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      .|...+......+.+.++.+|||++||+|..+..+++.. +.++|+++|+++.+++.++++.     .++.++.+|...+
T Consensus        15 ~~~~~~~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~i~~a~~~~-----~~~~~~~~d~~~~   88 (258)
T PRK01683         15 ERTRPARDLLARVPLENPRYVVDLGCGPGNSTELLVERW-PAARITGIDSSPAMLAEARSRL-----PDCQFVEADIASW   88 (258)
T ss_pred             HhhcHHHHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHhC-----CCCeEEECchhcc
Confidence            355556566667778899999999999999999999875 4579999999999999988763     5678888887643

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=98.19  E-value=5.5e-06  Score=80.19  Aligned_cols=75  Identities=20%  Similarity=0.210  Sum_probs=66.7

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCC-----cEEEEEcCChHHHHHHHHHHHHhCCc---ceEEEecchhh
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE-----GEVVAVDRSHNKVMDIQKLAAEMGLK---CITTYKLDALK  323 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~-----g~V~A~D~s~~rl~~l~~~l~r~g~~---nv~~~~~Da~~  323 (422)
                      +.+..|+|..|.++||+|+|+|..|+.|.....++     ++|+.+|+++.++...++++++.++.   ++.++.+||.+
T Consensus        91 ~~v~~L~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~  170 (296)
T KOG1540|consen   91 MFVSKLGPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAED  170 (296)
T ss_pred             HhhhccCCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCccc
Confidence            45678899999999999999999999999988764     89999999999999999999887762   38999999998


Q ss_pred             hhh
Q 014571          324 AVR  326 (422)
Q Consensus       324 ~~~  326 (422)
                      ++.
T Consensus       171 LpF  173 (296)
T KOG1540|consen  171 LPF  173 (296)
T ss_pred             CCC
Confidence            864

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=98.17  E-value=7.8e-06  Score=79.14  Aligned_cols=66  Identities=15%  Similarity=0.225  Sum_probs=57.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhcc-CCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKA  324 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~-~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~  324 (422)
                      +.++.+|||++||+|.-+..+++.+ .+.++|+++|.|+.+++.+++++++.|.. +++++++|+...
T Consensus        54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~  121 (247)
T PRK15451         54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDI  121 (247)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhC
Confidence            4578899999999999999888864 45689999999999999999999998874 699999997654

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=98.15  E-value=1.2e-05  Score=78.32  Aligned_cols=106  Identities=12%  Similarity=0.123  Sum_probs=87.7

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEe
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYK  318 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~  318 (422)
                      .-.+|.-|.+  ++...|+..||.+|+..+.|.|+.+..|+..+++.|+++.+|.+..|.+.+.+..++.|+ +|+.++.
T Consensus        86 TQI~Yt~Dia--~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~h  163 (314)
T KOG2915|consen   86 TQILYTPDIA--MILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTH  163 (314)
T ss_pred             ceEEecccHH--HHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEE
Confidence            4557777764  677899999999999999999999999999999999999999999999999999999998 6788888


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      -|.-..-+             ......+|.|++|-|.--.-.
T Consensus       164 rDVc~~GF-------------~~ks~~aDaVFLDlPaPw~Ai  192 (314)
T KOG2915|consen  164 RDVCGSGF-------------LIKSLKADAVFLDLPAPWEAI  192 (314)
T ss_pred             eecccCCc-------------cccccccceEEEcCCChhhhh
Confidence            77543211             111467899999998765433

>TIGR00477 tehB tellurite resistance protein TehB

Probab=98.14  E-value=1.3e-05  Score=74.95  Aligned_cols=70  Identities=16%  Similarity=0.156  Sum_probs=58.0

Q ss_pred             hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchh
Q 014571          249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL  322 (422)
Q Consensus       249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~  322 (422)
                      .+..+...+.+.++.+|||++||+|.-+..+|+.   ...|+|+|+|+.+++.++++++..|++ +.+...|..
T Consensus        18 ~~~~l~~~~~~~~~~~vLDiGcG~G~~a~~la~~---g~~V~~iD~s~~~l~~a~~~~~~~~~~-v~~~~~d~~   87 (195)
T TIGR00477        18 THSAVREAVKTVAPCKTLDLGCGQGRNSLYLSLA---GYDVRAWDHNPASIASVLDMKARENLP-LRTDAYDIN   87 (195)
T ss_pred             chHHHHHHhccCCCCcEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHhCCC-ceeEeccch
Confidence            3444556677777789999999999999999985   369999999999999999999888875 777777754

Part of a tellurite-reducing operon tehA and tehB

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=98.13  E-value=4e-06  Score=87.87  Aligned_cols=114  Identities=19%  Similarity=0.091  Sum_probs=88.7

Q ss_pred             EEeChhHHH------HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEE
Q 014571          244 FLQNLPSIV------TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY  317 (422)
Q Consensus       244 ~~Qd~~S~l------v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~  317 (422)
                      +.|.=.|++      +..+++...+..++|+|||+|...+.+|+.   .++|+++|+++.-++.++.|++..|++|.+++
T Consensus       360 FFQ~Nt~~aevLys~i~e~~~l~~~k~llDv~CGTG~iglala~~---~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi  436 (534)
T KOG2187|consen  360 FFQTNTSAAEVLYSTIGEWAGLPADKTLLDVCCGTGTIGLALARG---VKRVIGVEISPDAVEDAEKNAQINGISNATFI  436 (534)
T ss_pred             hhccCcHHHHHHHHHHHHHhCCCCCcEEEEEeecCCceehhhhcc---ccceeeeecChhhcchhhhcchhcCccceeee
Confidence            446655554      456778889999999999999999988876   47899999999999999999999999999999


Q ss_pred             ecchhhhhhccCCCCCCccccCCCCCCCCC-ceeecCCccccCch--hhhhhCCCC
Q 014571          318 KLDALKAVRRKNESNDEPNMCNSKDNNYIT-SQTSDSMKLHKEVP--SIAAEGLNG  370 (422)
Q Consensus       318 ~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD-~VLvDaPCSg~G~l--~~lrr~p~~  370 (422)
                      ++.+.+.....-.+..          ..-+ .+++|+|.+|.-+.  ..+|+.+..
T Consensus       437 ~gqaE~~~~sl~~~~~----------~~~~~v~iiDPpR~Glh~~~ik~l~~~~~~  482 (534)
T KOG2187|consen  437 VGQAEDLFPSLLTPCC----------DSETLVAIIDPPRKGLHMKVIKALRAYKNP  482 (534)
T ss_pred             ecchhhccchhcccCC----------CCCceEEEECCCcccccHHHHHHHHhccCc
Confidence            9977766543322210          1124 89999999997653  557777654

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=98.11  E-value=1.1e-05  Score=78.69  Aligned_cols=87  Identities=14%  Similarity=0.055  Sum_probs=69.9

Q ss_pred             hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhcc
Q 014571          249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRK  328 (422)
Q Consensus       249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~  328 (422)
                      .....+..+++.+|++|||+|||+|.-|..+++.   ..+|+|+|+++.+++.++++++.  .++++++++|+.+...  
T Consensus        17 ~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~---~~~v~~vEid~~~~~~l~~~~~~--~~~v~ii~~D~~~~~~--   89 (258)
T PRK14896         17 VVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKR---AKKVYAIELDPRLAEFLRDDEIA--AGNVEIIEGDALKVDL--   89 (258)
T ss_pred             HHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHhcc--CCCEEEEEeccccCCc--
Confidence            3345566678889999999999999999999987   35899999999999999988765  4689999999876431  


Q ss_pred             CCCCCCccccCCCCCCCCCceeecCCccc
Q 014571          329 NESNDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                                     ..||.|+...|-.-
T Consensus        90 ---------------~~~d~Vv~NlPy~i  103 (258)
T PRK14896         90 ---------------PEFNKVVSNLPYQI  103 (258)
T ss_pred             ---------------hhceEEEEcCCccc
Confidence                           12578888877654

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=98.10  E-value=1.1e-05  Score=78.08  Aligned_cols=66  Identities=17%  Similarity=0.182  Sum_probs=54.3

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      .-+...+.+.++.+|||++||+|..+..+++.. +.++|+++|+|+.+++.++++       ++.++++|+..+
T Consensus        19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~-p~~~v~gvD~s~~~~~~a~~~-------~~~~~~~d~~~~   84 (255)
T PRK14103         19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRW-PGAVIEALDSSPEMVAAARER-------GVDARTGDVRDW   84 (255)
T ss_pred             HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHhc-------CCcEEEcChhhC
Confidence            344566777899999999999999999999876 457999999999999988652       477888887654

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=98.06  E-value=2.2e-05  Score=74.12  Aligned_cols=74  Identities=24%  Similarity=0.298  Sum_probs=61.8

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhh
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKA  324 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~  324 (422)
                      ..+...+.+.++.+|||+|||+|..+..++...+...+++++|.++.+++.+++++...+. .++.++..|+...
T Consensus        41 ~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~  115 (239)
T PRK00216         41 RKTIKWLGVRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL  115 (239)
T ss_pred             HHHHHHhCCCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence            3455667777899999999999999999999875468999999999999999999887655 4588888887654

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=98.06  E-value=1.5e-05  Score=78.01  Aligned_cols=70  Identities=19%  Similarity=0.172  Sum_probs=58.1

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      +...+..+.+.++.+|||++||+|+-+..++...  .++|+++|+++.+++.+++++..  ..++.+...|+..
T Consensus        41 ~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~--~~~v~giD~s~~~~~~a~~~~~~--~~~i~~~~~D~~~  110 (263)
T PTZ00098         41 TTKILSDIELNENSKVLDIGSGLGGGCKYINEKY--GAHVHGVDICEKMVNIAKLRNSD--KNKIEFEANDILK  110 (263)
T ss_pred             HHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhc--CCEEEEEECCHHHHHHHHHHcCc--CCceEEEECCccc
Confidence            4455566788999999999999999999998753  46999999999999999987654  3568898888764

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=98.05  E-value=2.4e-05  Score=74.03  Aligned_cols=62  Identities=27%  Similarity=0.234  Sum_probs=54.2

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK  323 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~  323 (422)
                      +.++.+|||+|||+|..+..++..   ..+|+|+|+++.++..+++++...+. .++.+.+.|...
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~---~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~  115 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKR---GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLS  115 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhh
Confidence            567899999999999999999875   35899999999999999999988776 478898888764

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=98.05  E-value=2.1e-05  Score=77.92  Aligned_cols=76  Identities=25%  Similarity=0.213  Sum_probs=60.7

Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      .+...++.+|||++||.|.-+..+++.   ..+|+|+|.|+.+++.++++++..++ ++++...|.....          
T Consensus       115 ~~~~~~~~~vLDlGcG~G~~~~~la~~---g~~V~avD~s~~ai~~~~~~~~~~~l-~v~~~~~D~~~~~----------  180 (287)
T PRK12335        115 AVQTVKPGKALDLGCGQGRNSLYLALL---GFDVTAVDINQQSLENLQEIAEKENL-NIRTGLYDINSAS----------  180 (287)
T ss_pred             HhhccCCCCEEEeCCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHHcCC-ceEEEEechhccc----------
Confidence            333334459999999999999999885   36999999999999999999999888 7888888865421          


Q ss_pred             cccCCCCCCCCCceee
Q 014571          336 NMCNSKDNNYITSQTS  351 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLv  351 (422)
                            ..+.||.|++
T Consensus       181 ------~~~~fD~I~~  190 (287)
T PRK12335        181 ------IQEEYDFILS  190 (287)
T ss_pred             ------ccCCccEEEE
Confidence                  1356898886

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=98.05  E-value=1.2e-05  Score=79.05  Aligned_cols=87  Identities=20%  Similarity=0.132  Sum_probs=69.1

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      ...+..+++.+|++|||+|||+|..|..+++..   .+|+|+|+++.+++.+++++..   ++++++++|+.+.....  
T Consensus        32 ~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~avE~d~~~~~~~~~~~~~---~~v~~i~~D~~~~~~~~--  103 (272)
T PRK00274         32 DKIVDAAGPQPGDNVLEIGPGLGALTEPLLERA---AKVTAVEIDRDLAPILAETFAE---DNLTIIEGDALKVDLSE--  103 (272)
T ss_pred             HHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhC---CcEEEEECCHHHHHHHHHhhcc---CceEEEEChhhcCCHHH--
Confidence            345567788999999999999999999999983   3899999999999999987643   68999999998753211  


Q ss_pred             CCCCccccCCCCCCCCCceeecCCcccc
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                                   ..+|.|+...|-.-+
T Consensus       104 -------------~~~~~vv~NlPY~is  118 (272)
T PRK00274        104 -------------LQPLKVVANLPYNIT  118 (272)
T ss_pred             -------------cCcceEEEeCCccch
Confidence                         014788888886544

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.05  E-value=1.3e-05  Score=79.11  Aligned_cols=73  Identities=19%  Similarity=0.181  Sum_probs=57.5

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhh
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKA  324 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~  324 (422)
                      -..+...++++||++|||++||-|+-+..+|+..  ..+|+++.+|+.-.+.+++++++.|+. .+++...|.+.+
T Consensus        51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~--g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~  124 (273)
T PF02353_consen   51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERY--GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL  124 (273)
T ss_dssp             HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH----EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHc--CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence            3467778889999999999999999999999985  469999999999999999999999985 489999887654

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>PLN03075 nicotianamine synthase; Provisional

Probab=98.04  E-value=2.2e-05  Score=78.20  Aligned_cols=113  Identities=10%  Similarity=0.014  Sum_probs=82.6

Q ss_pred             CCCeEEEecCCCChhHHHHHh-ccCCCcEEEEEcCChHHHHHHHHHHHH-hCCcc-eEEEecchhhhhhccCCCCCCccc
Q 014571          261 KGERILDMCAAPGGKTTAIAS-LLRDEGEVVAVDRSHNKVMDIQKLAAE-MGLKC-ITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~-l~~~~g~V~A~D~s~~rl~~l~~~l~r-~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      ++++|+|++||||+.|..+.. ...++++++++|+++.+++.+++++++ .|+.+ |++..+|+.....           
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~-----------  191 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTE-----------  191 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhccc-----------
Confidence            779999999999988776544 445779999999999999999999965 78854 9999999876321           


Q ss_pred             cCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe-hh-hHHHHH
Q 014571          338 CNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL-TA-LIESFL  414 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~-t~-~~~~~~  414 (422)
                          ..+.||.|++++ +                ..|...         .+.++|++... ++.||++++ ++ -+.+|+
T Consensus       192 ----~l~~FDlVF~~A-L----------------i~~dk~---------~k~~vL~~l~~~LkPGG~Lvlr~~~G~r~~L  241 (296)
T PLN03075        192 ----SLKEYDVVFLAA-L----------------VGMDKE---------EKVKVIEHLGKHMAPGALLMLRSAHGARAFL  241 (296)
T ss_pred             ----ccCCcCEEEEec-c----------------cccccc---------cHHHHHHHHHHhcCCCcEEEEecccchHhhc
Confidence                024599999961 1                123221         24567777766 899999998 43 344443

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.01  E-value=4.2e-05  Score=74.22  Aligned_cols=60  Identities=27%  Similarity=0.286  Sum_probs=47.5

Q ss_pred             HHHHHHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC
Q 014571          250 SIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL  311 (422)
Q Consensus       250 S~lv~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~  311 (422)
                      +.++...+.  +.+|.+|||++||+|..+..++.. + ..+|+|+|+++.+++.+++|+++.++
T Consensus       106 t~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~-g-~~~v~giDis~~~l~~A~~n~~~~~~  167 (250)
T PRK00517        106 TRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKL-G-AKKVLAVDIDPQAVEAARENAELNGV  167 (250)
T ss_pred             HHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHc-C-CCeEEEEECCHHHHHHHHHHHHHcCC
Confidence            333444443  568999999999999887766654 3 34799999999999999999998877

>PLN02672 methionine S-methyltransferase

Probab=98.01  E-value=2.5e-05  Score=89.46  Aligned_cols=129  Identities=12%  Similarity=0.009  Sum_probs=86.7

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC----------------cceEEEecchhhhh
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL----------------KCITTYKLDALKAV  325 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~----------------~nv~~~~~Da~~~~  325 (422)
                      |.+|||+|||+|..+..++.... .++|+|+|+|+..++.+++|+++.++                .+|+++++|.....
T Consensus       119 ~~~VLDlG~GSG~Iai~La~~~~-~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~  197 (1082)
T PLN02672        119 DKTVAELGCGNGWISIAIAEKWL-PSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC  197 (1082)
T ss_pred             CCEEEEEecchHHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhc
Confidence            56999999999999999998864 47999999999999999999998653                36899999986532


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCCccccCch----hhhhhC-CCCCcccccc-Cccc------chhHHHHHHHHH
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVP----SIAAEG-LNGDKSCKEK-GRTC------GECGMAQEEINA  393 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l----~~lrr~-p~~~~~w~~~-~~~~------~~l~~~Q~~IL~  393 (422)
                      .              .....||.|+..||-...+..    ...+.+ |+. +.++.. ...+      ..=-..=++|+.
T Consensus       198 ~--------------~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~-~~~~~~p~~AL~g~~~g~dGL~~yr~i~~  262 (1082)
T PLN02672        198 R--------------DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEE-FLYSLSNYCALQGFVEDQFGLGLIARAVE  262 (1082)
T ss_pred             c--------------ccCCceEEEEECCCcCCCcchhhcChhhhhccccc-cccccCccccccCCCCCCcHHHHHHHHHH
Confidence            1              011359999999998876642    112221 110 001000 0000      001113367777


Q ss_pred             Hhcc-ceeccEEEe
Q 014571          394 LVVG-LRIQKVLVL  406 (422)
Q Consensus       394 ~a~~-lr~~~~~~~  406 (422)
                      .+.. |+.+|.+++
T Consensus       263 ~a~~~L~pgG~l~l  276 (1082)
T PLN02672        263 EGISVIKPMGIMIF  276 (1082)
T ss_pred             HHHHhccCCCEEEE
Confidence            7754 899999888

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=98.00  E-value=2.5e-05  Score=78.94  Aligned_cols=76  Identities=18%  Similarity=0.155  Sum_probs=61.4

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCcc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      .+.+|.+|||++||.|..+..+++.   .+.|+++|.++++++.++++++..+. .++.++++|+..++..         
T Consensus       128 ~~~~g~~ILDIGCG~G~~s~~La~~---g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~---------  195 (322)
T PLN02396        128 KPFEGLKFIDIGCGGGLLSEPLARM---GATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADE---------  195 (322)
T ss_pred             cCCCCCEEEEeeCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhc---------
Confidence            4668899999999999999988864   46999999999999999988766554 5799999998765321         


Q ss_pred             ccCCCCCCCCCceee
Q 014571          337 MCNSKDNNYITSQTS  351 (422)
Q Consensus       337 ~~~~~~~~~FD~VLv  351 (422)
                            .+.||.|++
T Consensus       196 ------~~~FD~Vi~  204 (322)
T PLN02396        196 ------GRKFDAVLS  204 (322)
T ss_pred             ------cCCCCEEEE
Confidence                  246888876

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=98.00  E-value=2.7e-05  Score=75.81  Aligned_cols=99  Identities=15%  Similarity=0.080  Sum_probs=79.2

Q ss_pred             hhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhh
Q 014571          248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVR  326 (422)
Q Consensus       248 ~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~  326 (422)
                      ...++...++......+||+++.+.|--|+.+|..+++.|+|+++|.++.+.+.+++++++.|+ ++|+++.+|+.....
T Consensus        66 ~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~  145 (247)
T PLN02589         66 DEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLD  145 (247)
T ss_pred             HHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHH
Confidence            3345555555556677999999999999999999988889999999999999999999999997 569999999988654


Q ss_pred             ccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          327 RKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      ......        ...+.||.|++|+-
T Consensus       146 ~l~~~~--------~~~~~fD~iFiDad  165 (247)
T PLN02589        146 QMIEDG--------KYHGTFDFIFVDAD  165 (247)
T ss_pred             HHHhcc--------ccCCcccEEEecCC
Confidence            422110        11357999999984

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=97.99  E-value=5.3e-06  Score=76.14  Aligned_cols=85  Identities=25%  Similarity=0.215  Sum_probs=53.2

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      ++..+.+|||+||||||.|..+++..+..++|+|+|+.+.           ....++..+++|.+........ ..    
T Consensus        20 ~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~~~~i~~d~~~~~~~~~i-~~----   83 (181)
T PF01728_consen   20 KPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQNVSFIQGDITNPENIKDI-RK----   83 (181)
T ss_dssp             -TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TTEEBTTGGGEEEEHSHHG-GG----
T ss_pred             CcccccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccceeeeecccchhhHHHhh-hh----
Confidence            3445699999999999999999999766799999999977           2335677777777543211100 00    


Q ss_pred             cCCCCCCCCCceeecC--Ccccc
Q 014571          338 CNSKDNNYITSQTSDS--MKLHK  358 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDa--PCSg~  358 (422)
                      ........||.|++|.  +|+|.
T Consensus        84 ~~~~~~~~~dlv~~D~~~~~~g~  106 (181)
T PF01728_consen   84 LLPESGEKFDLVLSDMAPNVSGD  106 (181)
T ss_dssp             SHGTTTCSESEEEE-------SS
T ss_pred             hccccccCcceeccccccCCCCc
Confidence            0001135799999999  55554

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=97.99  E-value=2.6e-05  Score=78.51  Aligned_cols=59  Identities=20%  Similarity=0.049  Sum_probs=49.7

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-----CcceEEEecchh
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-----LKCITTYKLDAL  322 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-----~~nv~~~~~Da~  322 (422)
                      +|.+|||+|||+|..+..+++.   ...|+++|+|+.+++.++++++..+     ..++.+...|..
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~---g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~  207 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE---GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLE  207 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchh
Confidence            6889999999999999999985   3589999999999999999988763     235677777753

>TIGR00740 methyltransferase, putative

Probab=97.98  E-value=3.5e-05  Score=73.95  Aligned_cols=66  Identities=12%  Similarity=0.112  Sum_probs=57.1

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKA  324 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~  324 (422)
                      +.++.+|||++||+|..+..+++... +.++|+++|+|+.+++.++++++..+. .++.++++|....
T Consensus        51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~  118 (239)
T TIGR00740        51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV  118 (239)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC
Confidence            35788999999999999999998753 468999999999999999999988764 4689999998764

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=97.96  E-value=2e-05  Score=76.07  Aligned_cols=73  Identities=19%  Similarity=0.076  Sum_probs=58.3

Q ss_pred             EEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       244 ~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      .+|...+......+...++.+|||++||+|..+..++..   ...|+++|+|+.+++.++++..     .+.++++|...
T Consensus        25 ~~q~~~a~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~~D~s~~~l~~a~~~~~-----~~~~~~~d~~~   96 (251)
T PRK10258         25 ELQRQSADALLAMLPQRKFTHVLDAGCGPGWMSRYWRER---GSQVTALDLSPPMLAQARQKDA-----ADHYLAGDIES   96 (251)
T ss_pred             HHHHHHHHHHHHhcCccCCCeEEEeeCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCCEEEcCccc
Confidence            367777777778887777889999999999999888764   3689999999999998887642     24567778765


Q ss_pred             h
Q 014571          324 A  324 (422)
Q Consensus       324 ~  324 (422)
                      .
T Consensus        97 ~   97 (251)
T PRK10258         97 L   97 (251)
T ss_pred             C
Confidence            3

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=97.96  E-value=1.7e-05  Score=76.28  Aligned_cols=110  Identities=18%  Similarity=0.176  Sum_probs=81.2

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      -+|.+|||++||-|..+..||++   ...|+|+|.+++.++.++..+.+-|+. |...+..+..+..             
T Consensus        58 l~g~~vLDvGCGgG~Lse~mAr~---Ga~VtgiD~se~~I~~Ak~ha~e~gv~-i~y~~~~~edl~~-------------  120 (243)
T COG2227          58 LPGLRVLDVGCGGGILSEPLARL---GASVTGIDASEKPIEVAKLHALESGVN-IDYRQATVEDLAS-------------  120 (243)
T ss_pred             CCCCeEEEecCCccHhhHHHHHC---CCeeEEecCChHHHHHHHHhhhhcccc-ccchhhhHHHHHh-------------
Confidence            58999999999999999999997   489999999999999999999998875 5555555544321             


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehhhHHHHHh
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTALIESFLM  415 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~~~~~~~~  415 (422)
                        ..+.||+|+|      ..+++|   -|+                 - ..++++++. +|.+|.+++++.-.|+.+
T Consensus       121 --~~~~FDvV~c------mEVlEH---v~d-----------------p-~~~~~~c~~lvkP~G~lf~STinrt~ka  168 (243)
T COG2227         121 --AGGQFDVVTC------MEVLEH---VPD-----------------P-ESFLRACAKLVKPGGILFLSTINRTLKA  168 (243)
T ss_pred             --cCCCccEEEE------hhHHHc---cCC-----------------H-HHHHHHHHHHcCCCcEEEEeccccCHHH
Confidence              1368999998      233221   111                 1 126776665 799999999777666543

>PRK04457 spermidine synthase; Provisional

Probab=97.94  E-value=3.6e-05  Score=75.50  Aligned_cols=80  Identities=11%  Similarity=0.064  Sum_probs=65.2

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      ..++.+|||+++|.|.-+..++... +..+|+++|+++..++.++++....+. ++++++.+|+..+....         
T Consensus        64 ~~~~~~vL~IG~G~G~l~~~l~~~~-p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~---------  133 (262)
T PRK04457         64 NPRPQHILQIGLGGGSLAKFIYTYL-PDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH---------  133 (262)
T ss_pred             CCCCCEEEEECCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC---------
Confidence            3456799999999999999898876 468999999999999999988754443 67999999998875321         


Q ss_pred             cCCCCCCCCCceeecC
Q 014571          338 CNSKDNNYITSQTSDS  353 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDa  353 (422)
                           ...||.|++|+
T Consensus       134 -----~~~yD~I~~D~  144 (262)
T PRK04457        134 -----RHSTDVILVDG  144 (262)
T ss_pred             -----CCCCCEEEEeC
Confidence                 24689999996

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=97.93  E-value=3.2e-05  Score=79.86  Aligned_cols=69  Identities=23%  Similarity=0.143  Sum_probs=56.8

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      ...+...+++++|++|||+|||+|+.+.++++..  ..+|+++|+|+.+++.++++++.  + ++++...|...
T Consensus       156 ~~~l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~--g~~V~giDlS~~~l~~A~~~~~~--l-~v~~~~~D~~~  224 (383)
T PRK11705        156 LDLICRKLQLKPGMRVLDIGCGWGGLARYAAEHY--GVSVVGVTISAEQQKLAQERCAG--L-PVEIRLQDYRD  224 (383)
T ss_pred             HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHhcc--C-eEEEEECchhh
Confidence            3456677888999999999999999999999875  36899999999999999998853  3 37777777543

>smart00359 PUA Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase

Probab=97.93  E-value=2.5e-05  Score=61.51  Aligned_cols=70  Identities=33%  Similarity=0.584  Sum_probs=61.8

Q ss_pred             EEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEEE
Q 014571          125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQ  204 (422)
Q Consensus       125 ~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrv  204 (422)
                      +++|+.++++++++|+.+|.+||...+..++.||.|.|+                                ..++.+++.
T Consensus         2 ~i~v~~~~~~~i~~g~~v~~~~v~~~~~~~~~g~~V~v~--------------------------------~~~g~~vg~   49 (77)
T smart00359        2 KVVVDDGAVKAILNGASLLAPGVVRVDGGIKEGDVVVIV--------------------------------DEKGEPLGI   49 (77)
T ss_pred             EEEEchhHHHHHHcCCCcccceeEEEeCCcCCCCEEEEE--------------------------------cCCCCEEEE
Confidence            588999999999999999999999999899999999999                                335789999


Q ss_pred             ccCccCHHHHhcc--cCcceeecc
Q 014571          205 GTAMMSRAGIFRA--SEGIAVDMH  226 (422)
Q Consensus       205 g~a~msreel~~~--~~GiaV~~~  226 (422)
                      |...++...+.+.  .+|+.++..
T Consensus        50 G~~~~~s~~~~~~~~~~g~~v~~~   73 (77)
T smart00359       50 GLANMSSEEMARIKGEKGLAVKVR   73 (77)
T ss_pred             EEEeCCHHHHHHHhccCceEEEEE
Confidence            9999999888875  588888754

>PRK06202 hypothetical protein; Provisional

Probab=97.93  E-value=2.6e-05  Score=74.45  Aligned_cols=83  Identities=19%  Similarity=0.119  Sum_probs=58.8

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccC---CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhc
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLR---DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR  327 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~---~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~  327 (422)
                      .+....+...++.+|||+|||+|.-+..+++...   ...+|+|+|+++.+++.++++....   ++.+...|+...+. 
T Consensus        50 ~~~~~~l~~~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~---~~~~~~~~~~~l~~-  125 (232)
T PRK06202         50 RLLRPALSADRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP---GVTFRQAVSDELVA-  125 (232)
T ss_pred             HHHHHhcCCCCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC---CCeEEEEecccccc-
Confidence            3444455556788999999999999999887543   2359999999999999998875543   34555555433221 


Q ss_pred             cCCCCCCccccCCCCCCCCCceee
Q 014571          328 KNESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                                    ..+.||.|++
T Consensus       126 --------------~~~~fD~V~~  135 (232)
T PRK06202        126 --------------EGERFDVVTS  135 (232)
T ss_pred             --------------cCCCccEEEE
Confidence                          1346898887

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=97.91  E-value=3.9e-05  Score=75.04  Aligned_cols=89  Identities=18%  Similarity=0.136  Sum_probs=70.2

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .+..+||+|||+|..++.++..++ +++|+|+|+|+..+..+.+|++|+++.+ +.++..+...-....          +
T Consensus       148 ~~~~ildlgtGSGaIslsll~~L~-~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~----------~  216 (328)
T KOG2904|consen  148 KHTHILDLGTGSGAISLSLLHGLP-QCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDE----------H  216 (328)
T ss_pred             ccceEEEecCCccHHHHHHHhcCC-CceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccc----------c
Confidence            455899999999999999999887 7999999999999999999999999865 777765543211100          1


Q ss_pred             CCCCCCCCceeecCCccccCc
Q 014571          340 SKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      ....+++|.++..||..-.-.
T Consensus       217 ~l~~~~~dllvsNPPYI~~dD  237 (328)
T KOG2904|consen  217 PLLEGKIDLLVSNPPYIRKDD  237 (328)
T ss_pred             ccccCceeEEecCCCcccccc
Confidence            122467899999999988655

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=97.89  E-value=8.7e-05  Score=69.71  Aligned_cols=117  Identities=17%  Similarity=0.159  Sum_probs=80.2

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD  342 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~  342 (422)
                      ..+||+|||-|..++++|... ++..++|+|++..++..+.+++.+.|++|+.++++|+..+......            
T Consensus        19 ~l~lEIG~G~G~~l~~~A~~~-Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~------------   85 (195)
T PF02390_consen   19 PLILEIGCGKGEFLIELAKRN-PDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFP------------   85 (195)
T ss_dssp             EEEEEET-TTSHHHHHHHHHS-TTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHST------------
T ss_pred             CeEEEecCCCCHHHHHHHHHC-CCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhccc------------
Confidence            389999999999999999985 5689999999999999999999999999999999999886543211            


Q ss_pred             CCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe-hhhHH
Q 014571          343 NNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL-TALIE  411 (422)
Q Consensus       343 ~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~-t~~~~  411 (422)
                      .+.+|.|.+--              |+-|.+-+-.+.   +  -.|.+.|+.... |+.+|.+-+ |++-|
T Consensus        86 ~~~v~~i~i~F--------------PDPWpK~rH~kr---R--l~~~~fl~~~~~~L~~gG~l~~~TD~~~  137 (195)
T PF02390_consen   86 PGSVDRIYINF--------------PDPWPKKRHHKR---R--LVNPEFLELLARVLKPGGELYFATDVEE  137 (195)
T ss_dssp             TTSEEEEEEES-------------------SGGGGGG---S--TTSHHHHHHHHHHEEEEEEEEEEES-HH
T ss_pred             CCchheEEEeC--------------CCCCcccchhhh---h--cCCchHHHHHHHHcCCCCEEEEEeCCHH
Confidence            24467676643              333211111111   1  156666766655 799998888 65544

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.88  E-value=4.3e-05  Score=76.07  Aligned_cols=107  Identities=18%  Similarity=0.180  Sum_probs=72.8

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhcc------CCCcEEEEEcCChHHHHHHHHHHHHhCC--
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLL------RDEGEVVAVDRSHNKVMDIQKLAAEMGL--  311 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~------~~~g~V~A~D~s~~rl~~l~~~l~r~g~--  311 (422)
                      .|.+|-=..-+.+.+.++.++++++|+|.|||.|+....+...+      .....++|+|+++..+..++-|+.-.|.  
T Consensus        25 ~G~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~  104 (311)
T PF02384_consen   25 LGQFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDN  104 (311)
T ss_dssp             CGGC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHC
T ss_pred             cceeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccc
Confidence            35555445555788888899999999999999999988888754      2467999999999999999888876664  


Q ss_pred             cceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccC
Q 014571          312 KCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKE  359 (422)
Q Consensus       312 ~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G  359 (422)
                      .+..+...|+......             .....||.|+..||=...+
T Consensus       105 ~~~~i~~~d~l~~~~~-------------~~~~~~D~ii~NPPf~~~~  139 (311)
T PF02384_consen  105 SNINIIQGDSLENDKF-------------IKNQKFDVIIGNPPFGSKE  139 (311)
T ss_dssp             BGCEEEES-TTTSHSC-------------TST--EEEEEEE--CTCES
T ss_pred             cccccccccccccccc-------------ccccccccccCCCCccccc
Confidence            3346777776543211             0135799999999999883

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]

Probab=97.87  E-value=2.1e-05  Score=72.24  Aligned_cols=72  Identities=29%  Similarity=0.446  Sum_probs=66.7

Q ss_pred             CCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEE
Q 014571          123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI  202 (422)
Q Consensus       123 ~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~V  202 (422)
                      .|-+.||.+++|++.+|++|++|||+.+..+++.||.|.|.                                +.++.++
T Consensus       128 ~k~~~i~~~~~E~~~Ng~nV~~~gV~e~~~~i~~~d~viVv--------------------------------~~ng~~v  175 (202)
T COG5270         128 KKGRKIDRGAVEPVKNGKNVLPPGVIEAEDSIERGDEVIVV--------------------------------SENGRVV  175 (202)
T ss_pred             CccEEEEcccchhhhccCcccCCceeeccCCcccCCeEEEE--------------------------------ecCCEEE
Confidence            67888999999999999999999999999999999999999                                5578899


Q ss_pred             EEccCccCHHHHhcccCcceeecc
Q 014571          203 GQGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       203 rvg~a~msreel~~~~~GiaV~~~  226 (422)
                      ++|.+.++++++....+|..+++.
T Consensus       176 GVg~a~~~~~~~in~~rG~~v~~~  199 (202)
T COG5270         176 GVGIAKKSYEELINPERGTGVKPR  199 (202)
T ss_pred             EEEEEecCHHHhcCcccCcccCCC
Confidence            999999999999988888888765

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=97.85  E-value=7.7e-05  Score=70.48  Aligned_cols=59  Identities=34%  Similarity=0.304  Sum_probs=51.8

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLD  320 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~D  320 (422)
                      ..++.+|||+|||+|..+..+++.   ...|+++|.++.+++.++++....+. .++.+..+|
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~---~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d  120 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARR---GAKVVASDISPQMVEEARERAPEAGLAGNITFEVGD  120 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcC
Confidence            357889999999999999999876   35699999999999999999988887 568888888

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=97.82  E-value=7.7e-05  Score=70.01  Aligned_cols=117  Identities=16%  Similarity=0.081  Sum_probs=78.1

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      |-.-.++....|.-..-.++||++||.|-.|.+||...   .+++|+|+++.-++.+++++..  .++|++.++|.....
T Consensus        28 ~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rC---d~LlavDis~~Al~~Ar~Rl~~--~~~V~~~~~dvp~~~  102 (201)
T PF05401_consen   28 RRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRC---DRLLAVDISPRALARARERLAG--LPHVEWIQADVPEFW  102 (201)
T ss_dssp             HHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGE---EEEEEEES-HHHHHHHHHHTTT---SSEEEEES-TTT--
T ss_pred             HHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhh---CceEEEeCCHHHHHHHHHhcCC--CCCeEEEECcCCCCC
Confidence            44433444445655566789999999999999999984   6899999999999999998875  478999999875431


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhccceeccEEE
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLV  405 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~lr~~~~~~  405 (422)
                                      ..+.||.|++    |..+.            .+.+       ...+++-|-+-+..|+.+|.||
T Consensus       103 ----------------P~~~FDLIV~----SEVlY------------YL~~-------~~~L~~~l~~l~~~L~pgG~LV  143 (201)
T PF05401_consen  103 ----------------PEGRFDLIVL----SEVLY------------YLDD-------AEDLRAALDRLVAALAPGGHLV  143 (201)
T ss_dssp             -----------------SS-EEEEEE----ES-GG------------GSSS-------HHHHHHHHHHHHHTEEEEEEEE
T ss_pred             ----------------CCCCeeEEEE----ehHhH------------cCCC-------HHHHHHHHHHHHHHhCCCCEEE
Confidence                            2467999987    33333            2332       1224444444445799999999


Q ss_pred             e
Q 014571          406 L  406 (422)
Q Consensus       406 ~  406 (422)
                      +
T Consensus       144 ~  144 (201)
T PF05401_consen  144 F  144 (201)
T ss_dssp             E
T ss_pred             E
Confidence            9

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=97.81  E-value=0.0001  Score=70.30  Aligned_cols=84  Identities=20%  Similarity=0.224  Sum_probs=65.3

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .++||.+||-++||+|.--+|++...+..|.|+|+|.++...+.+-+.+++-  +||.++..||+++.. ..        
T Consensus        70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R--~NIiPIl~DAr~P~~-Y~--------  138 (229)
T PF01269_consen   70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR--PNIIPILEDARHPEK-YR--------  138 (229)
T ss_dssp             S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS--TTEEEEES-TTSGGG-GT--------
T ss_pred             CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC--CceeeeeccCCChHH-hh--------
Confidence            4679999999999999999999999999999999999999999998887774  799999999997532 11        


Q ss_pred             cCCCCCCCCCceeecCCc
Q 014571          338 CNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPC  355 (422)
                         ..-+..|.|++|..-
T Consensus       139 ---~lv~~VDvI~~DVaQ  153 (229)
T PF01269_consen  139 ---MLVEMVDVIFQDVAQ  153 (229)
T ss_dssp             ---TTS--EEEEEEE-SS
T ss_pred             ---cccccccEEEecCCC
Confidence               123467999998753

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.81  E-value=3e-05  Score=62.02  Aligned_cols=94  Identities=20%  Similarity=0.139  Sum_probs=66.9

Q ss_pred             EEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCC
Q 014571          266 LDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNY  345 (422)
Q Consensus       266 LD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~  345 (422)
                      ||++||+|..+..+++.  +...|+++|.++.+++.++++.+..+   +.+..+|.+.++..               .+.
T Consensus         1 LdiG~G~G~~~~~l~~~--~~~~v~~~D~~~~~~~~~~~~~~~~~---~~~~~~d~~~l~~~---------------~~s   60 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR--GGASVTGIDISEEMLEQARKRLKNEG---VSFRQGDAEDLPFP---------------DNS   60 (95)
T ss_dssp             EEET-TTSHHHHHHHHT--TTCEEEEEES-HHHHHHHHHHTTTST---EEEEESBTTSSSS----------------TT-
T ss_pred             CEecCcCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHhcccccC---chheeehHHhCccc---------------ccc
Confidence            89999999999999998  56899999999999999999776544   55888888776421               357


Q ss_pred             CCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          346 ITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       346 FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                      ||.|++      .+.+           .|.          +-+.++++++.. +|.+|.++.
T Consensus        61 fD~v~~------~~~~-----------~~~----------~~~~~~l~e~~rvLk~gG~l~~   95 (95)
T PF08241_consen   61 FDVVFS------NSVL-----------HHL----------EDPEAALREIYRVLKPGGRLVI   95 (95)
T ss_dssp             EEEEEE------ESHG-----------GGS----------SHHHHHHHHHHHHEEEEEEEEE
T ss_pred             cccccc------ccce-----------eec----------cCHHHHHHHHHHHcCcCeEEeC
Confidence            899986      2220           111          234566766755 799998874

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.79  E-value=8e-05  Score=78.59  Aligned_cols=71  Identities=23%  Similarity=0.190  Sum_probs=57.8

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      ...+..+.++++.+|||+|||+|..+..++...  ..+|+|+|+|+.+++.+++++...+ .++.+.++|....
T Consensus       256 e~l~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvDiS~~~l~~A~~~~~~~~-~~v~~~~~d~~~~  326 (475)
T PLN02336        256 KEFVDKLDLKPGQKVLDVGCGIGGGDFYMAENF--DVHVVGIDLSVNMISFALERAIGRK-CSVEFEVADCTKK  326 (475)
T ss_pred             HHHHHhcCCCCCCEEEEEeccCCHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhhcCC-CceEEEEcCcccC
Confidence            345556667889999999999999999998865  4689999999999999998876433 3688999987653

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.78  E-value=5e-05  Score=71.74  Aligned_cols=84  Identities=21%  Similarity=0.158  Sum_probs=60.8

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      .++|.+|+|+||||||-+-.+++.++.++.|+|+|+.+-+           -..+|.++++|.+...........     
T Consensus        43 ~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~-----------~~~~V~~iq~d~~~~~~~~~l~~~-----  106 (205)
T COG0293          43 FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMK-----------PIPGVIFLQGDITDEDTLEKLLEA-----  106 (205)
T ss_pred             ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECcccc-----------cCCCceEEeeeccCccHHHHHHHH-----
Confidence            3579999999999999999999999988999999998642           135689999998864332110000     


Q ss_pred             CCCCCCCCCceeecCCccccCc
Q 014571          339 NSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                        .....+|.|+.|.----+|+
T Consensus       107 --l~~~~~DvV~sD~ap~~~g~  126 (205)
T COG0293         107 --LGGAPVDVVLSDMAPNTSGN  126 (205)
T ss_pred             --cCCCCcceEEecCCCCcCCC
Confidence              01223699999975555555

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=97.77  E-value=1.6e-05  Score=79.53  Aligned_cols=95  Identities=17%  Similarity=0.150  Sum_probs=66.8

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      +...|.++++..++|++-|.||+|..|.+..++ ++|+|+|.++..++.++++++.+ -.++.++..+...+....... 
T Consensus        12 vl~~L~~~~~g~~vD~T~G~GGHS~aiL~~~~~-~~li~~DrD~~a~~~a~~~l~~~-~~r~~~~~~~F~~l~~~l~~~-   88 (310)
T PF01795_consen   12 VLEALNPKPGGIYVDCTFGGGGHSKAILEKLPN-GRLIGIDRDPEALERAKERLKKF-DDRFIFIHGNFSNLDEYLKEL-   88 (310)
T ss_dssp             HHHHHT--TT-EEEETT-TTSHHHHHHHHT-TT--EEEEEES-HHHHHHHHCCTCCC-CTTEEEEES-GGGHHHHHHHT-
T ss_pred             HHHhhCcCCCceEEeecCCcHHHHHHHHHhCCC-CeEEEecCCHHHHHHHHHHHhhc-cceEEEEeccHHHHHHHHHHc-
Confidence            567788999999999999999999999999877 99999999999999999887766 356899988776654332211 


Q ss_pred             CCccccCCCCCCCCCceeecCCcccc
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                              .....+|.||.|--+|+.
T Consensus        89 --------~~~~~~dgiL~DLGvSS~  106 (310)
T PF01795_consen   89 --------NGINKVDGILFDLGVSSM  106 (310)
T ss_dssp             --------TTTS-EEEEEEE-S--HH
T ss_pred             --------cCCCccCEEEEccccCHH
Confidence                    023568999999999986

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=97.77  E-value=0.00012  Score=68.30  Aligned_cols=71  Identities=23%  Similarity=0.227  Sum_probs=58.1

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      .....+...++.+|||++||+|..+..++....+.++++++|+++..++.++++..  ...++.+..+|..+.
T Consensus        30 ~~~~~~~~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--~~~~i~~~~~d~~~~  100 (223)
T TIGR01934        30 RAVKLIGVFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--LPLNIEFIQADAEAL  100 (223)
T ss_pred             HHHHHhccCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc--cCCCceEEecchhcC
Confidence            34445556689999999999999999999887544799999999999999998876  345688888888764

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=97.76  E-value=7.7e-05  Score=70.48  Aligned_cols=60  Identities=18%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      ...++.+|||++||+|.-+..+++..+ ...++|+|+|+.+++.+++++     .++.+.++|+..
T Consensus        40 ~~~~~~~VLDiGCG~G~~~~~L~~~~~-~~~v~giDiS~~~l~~A~~~~-----~~~~~~~~d~~~   99 (204)
T TIGR03587        40 RLPKIASILELGANIGMNLAALKRLLP-FKHIYGVEINEYAVEKAKAYL-----PNINIIQGSLFD   99 (204)
T ss_pred             hcCCCCcEEEEecCCCHHHHHHHHhCC-CCeEEEEECCHHHHHHHHhhC-----CCCcEEEeeccC
Confidence            455788999999999999999988753 479999999999999998763     346677777654

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR03438 probable methyltransferase

Probab=97.76  E-value=4.2e-05  Score=76.40  Aligned_cols=93  Identities=17%  Similarity=0.215  Sum_probs=65.7

Q ss_pred             ccCCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH
Q 014571          229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE  308 (422)
Q Consensus       229 ~~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r  308 (422)
                      ++.+|.|...+.-.-.+++.++.++..+   .++.+|||++||+|.||..+++.+....+++++|+|+.+++.++++++.
T Consensus        34 i~~~peYy~tr~E~~il~~~~~~ia~~~---~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~  110 (301)
T TIGR03438        34 ICELPEYYPTRTEAAILERHADEIAAAT---GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA  110 (301)
T ss_pred             HHCCCccccHHHHHHHHHHHHHHHHHhh---CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh
Confidence            4566665433333233344444444332   4678999999999999999998875457899999999999999998876


Q ss_pred             hC-CcceEEEecchhhh
Q 014571          309 MG-LKCITTYKLDALKA  324 (422)
Q Consensus       309 ~g-~~nv~~~~~Da~~~  324 (422)
                      .. --+|..+++|....
T Consensus       111 ~~p~~~v~~i~gD~~~~  127 (301)
T TIGR03438       111 DYPQLEVHGICADFTQP  127 (301)
T ss_pred             hCCCceEEEEEEcccch
Confidence            43 12467788998753

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK05785 hypothetical protein; Provisional

Probab=97.74  E-value=6.7e-05  Score=71.90  Aligned_cols=66  Identities=17%  Similarity=0.093  Sum_probs=51.7

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      ++.+|||+|||+|.-+.++++..  .++|+++|.|+.+++.++++.        ..+++|+...+..             
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~~--~~~v~gvD~S~~Ml~~a~~~~--------~~~~~d~~~lp~~-------------  107 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKVF--KYYVVALDYAENMLKMNLVAD--------DKVVGSFEALPFR-------------  107 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHhc--CCEEEEECCCHHHHHHHHhcc--------ceEEechhhCCCC-------------
Confidence            47899999999999999998875  369999999999999887631        2456777654321             


Q ss_pred             CCCCCCCceee
Q 014571          341 KDNNYITSQTS  351 (422)
Q Consensus       341 ~~~~~FD~VLv  351 (422)
                        .+.||.|++
T Consensus       108 --d~sfD~v~~  116 (226)
T PRK05785        108 --DKSFDVVMS  116 (226)
T ss_pred             --CCCEEEEEe
Confidence              356898887

>PRK00811 spermidine synthase; Provisional

Probab=97.72  E-value=0.00019  Score=71.10  Aligned_cols=79  Identities=18%  Similarity=0.159  Sum_probs=64.1

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-----CcceEEEecchhhhhhccCCCCCCc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-----LKCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-----~~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      .+.+|||+|+|.|+-+..+++. .+..+|+++|+++..++.+++.+..++     -++++++.+|++.+...        
T Consensus        76 ~p~~VL~iG~G~G~~~~~~l~~-~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--------  146 (283)
T PRK00811         76 NPKRVLIIGGGDGGTLREVLKH-PSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE--------  146 (283)
T ss_pred             CCCEEEEEecCchHHHHHHHcC-CCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh--------
Confidence            4579999999999999988875 234689999999999999999987653     25699999999986532        


Q ss_pred             cccCCCCCCCCCceeecCC
Q 014571          336 NMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaP  354 (422)
                            ..+.||.|++|++
T Consensus       147 ------~~~~yDvIi~D~~  159 (283)
T PRK00811        147 ------TENSFDVIIVDST  159 (283)
T ss_pred             ------CCCcccEEEECCC
Confidence                  1356999999963

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=97.72  E-value=0.00017  Score=67.69  Aligned_cols=75  Identities=32%  Similarity=0.251  Sum_probs=56.0

Q ss_pred             EEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       244 ~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      ......|.+. .+++.-++.++||++||.|.-+.-+|++   .-.|+|+|.|+.-++.+++.+++.+++ |++.+.|...
T Consensus        14 ~~~~~hs~v~-~a~~~~~~g~~LDlgcG~GRNalyLA~~---G~~VtAvD~s~~al~~l~~~a~~~~l~-i~~~~~Dl~~   88 (192)
T PF03848_consen   14 GLTPTHSEVL-EAVPLLKPGKALDLGCGEGRNALYLASQ---GFDVTAVDISPVALEKLQRLAEEEGLD-IRTRVADLND   88 (192)
T ss_dssp             TB----HHHH-HHCTTS-SSEEEEES-TTSHHHHHHHHT---T-EEEEEESSHHHHHHHHHHHHHTT-T-EEEEE-BGCC
T ss_pred             CCCCCcHHHH-HHHhhcCCCcEEEcCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHhhcCce-eEEEEecchh
Confidence            3445566644 4566656779999999999999999998   468999999999999999999999987 8999888654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PRK06922 hypothetical protein; Provisional

Probab=97.71  E-value=0.00013  Score=79.39  Aligned_cols=83  Identities=20%  Similarity=0.220  Sum_probs=65.0

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      ...++..+|.+|||++||+|.-+..+++.. +.+.|+|+|+|+.+++.+++++...+. ++.++++|+..++..+     
T Consensus       411 ~~i~d~~~g~rVLDIGCGTG~ls~~LA~~~-P~~kVtGIDIS~~MLe~Ararl~~~g~-~ie~I~gDa~dLp~~f-----  483 (677)
T PRK06922        411 RIILDYIKGDTIVDVGAGGGVMLDMIEEET-EDKRIYGIDISENVIDTLKKKKQNEGR-SWNVIKGDAINLSSSF-----  483 (677)
T ss_pred             HHHhhhcCCCEEEEeCCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCC-CeEEEEcchHhCcccc-----
Confidence            445566689999999999999888888875 468999999999999999998876653 6888889987643111     


Q ss_pred             CccccCCCCCCCCCceee
Q 014571          334 EPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLv  351 (422)
                              ..+.||.|++
T Consensus       484 --------edeSFDvVVs  493 (677)
T PRK06922        484 --------EKESVDTIVY  493 (677)
T ss_pred             --------CCCCEEEEEE
Confidence                    1356898885

>TIGR00755 ksgA dimethyladenosine transferase

Probab=97.70  E-value=0.00012  Score=71.04  Aligned_cols=69  Identities=19%  Similarity=0.198  Sum_probs=58.2

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      .++..+++.++++|||+|||+|..|..|++..   ..|+++|+++..++.+++++..  ..+++++.+|+...+
T Consensus        20 ~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~---~~v~~iE~d~~~~~~l~~~~~~--~~~v~v~~~D~~~~~   88 (253)
T TIGR00755        20 KIVEAANVLEGDVVLEIGPGLGALTEPLLKRA---KKVTAIEIDPRLAEILRKLLSL--YERLEVIEGDALKVD   88 (253)
T ss_pred             HHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhC---CcEEEEECCHHHHHHHHHHhCc--CCcEEEEECchhcCC
Confidence            34556678899999999999999999999985   3599999999999999987644  467999999987654

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=97.68  E-value=0.00017  Score=72.75  Aligned_cols=88  Identities=14%  Similarity=0.071  Sum_probs=66.6

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh-CCc-ceEEEe-cchhhhhhccCCCCCCccc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-GLK-CITTYK-LDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~-g~~-nv~~~~-~Da~~~~~~~~~~~~~~~~  337 (422)
                      ++.++||+|||.|+....++.... ..+++|+|+++..++.+++|+++. ++. .|.+.. .|.........        
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~-~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~--------  184 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEY-GWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGII--------  184 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCC-CCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhccc--------
Confidence            578999999999999998888754 579999999999999999999998 775 477753 34433221100        


Q ss_pred             cCCCCCCCCCceeecCCccccCc
Q 014571          338 CNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                         ...+.||.|+|.||--.++.
T Consensus       185 ---~~~~~fDlivcNPPf~~s~~  204 (321)
T PRK11727        185 ---HKNERFDATLCNPPFHASAA  204 (321)
T ss_pred             ---ccCCceEEEEeCCCCcCcch
Confidence               11457999999999866543

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=97.65  E-value=0.00033  Score=66.62  Aligned_cols=84  Identities=20%  Similarity=0.167  Sum_probs=65.3

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      .++...+.+.++.+|||+|||+|..+..+++.   ...++++|.++..++.+++++...+. ++.+...|.......   
T Consensus        38 ~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~---  110 (233)
T PRK05134         38 NYIREHAGGLFGKRVLDVGCGGGILSESMARL---GADVTGIDASEENIEVARLHALESGL-KIDYRQTTAEELAAE---  110 (233)
T ss_pred             HHHHHhccCCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEcCCHHHHHHHHHHHHHcCC-ceEEEecCHHHhhhh---
Confidence            45555666778999999999999999888876   35799999999999999999888776 577777777654311   


Q ss_pred             CCCCccccCCCCCCCCCceeec
Q 014571          331 SNDEPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvD  352 (422)
                                 ..+.||.|++.
T Consensus       111 -----------~~~~fD~Ii~~  121 (233)
T PRK05134        111 -----------HPGQFDVVTCM  121 (233)
T ss_pred             -----------cCCCccEEEEh
Confidence                       12468999873

>KOG2730 consensus Methylase [General function prediction only]

Probab=97.64  E-value=5.6e-05  Score=71.83  Aligned_cols=86  Identities=21%  Similarity=0.094  Sum_probs=70.6

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      ..+.|+|..||-||-|++.|..   ...|+++|+++-|+..+++|++-+|+++ |.++++|..........         
T Consensus        94 ~~~~iidaf~g~gGntiqfa~~---~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld~~~~lq~---------  161 (263)
T KOG2730|consen   94 NAEVIVDAFCGVGGNTIQFALQ---GPYVIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLDLASKLKA---------  161 (263)
T ss_pred             CcchhhhhhhcCCchHHHHHHh---CCeEEEEeccHHHHHHHhccceeecCCceeEEEechHHHHHHHHhh---------
Confidence            5678999999999999999876   3589999999999999999999999955 99999998775433211         


Q ss_pred             CCCCCCCCceeecCCccccCc
Q 014571          340 SKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~  360 (422)
                        ...+.|.|+.-+|=+|.+-
T Consensus       162 --~K~~~~~vf~sppwggp~y  180 (263)
T KOG2730|consen  162 --DKIKYDCVFLSPPWGGPSY  180 (263)
T ss_pred             --hhheeeeeecCCCCCCcch
Confidence              1344688889999998876

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=97.62  E-value=0.00035  Score=70.61  Aligned_cols=84  Identities=17%  Similarity=0.101  Sum_probs=61.8

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhcc
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRK  328 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~  328 (422)
                      ...+...+.+.+|.+|||++||+|..+..++.. + ...|+++|.|+.++...+...+..+. .++.++.+|....+.  
T Consensus       111 ~~~l~~~l~~l~g~~VLDIGCG~G~~~~~la~~-g-~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~--  186 (322)
T PRK15068        111 WDRVLPHLSPLKGRTVLDVGCGNGYHMWRMLGA-G-AKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPA--  186 (322)
T ss_pred             HHHHHHhhCCCCCCEEEEeccCCcHHHHHHHHc-C-CCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCC--
Confidence            334455667778999999999999999999887 2 34799999999988765544444432 478899888775431  


Q ss_pred             CCCCCCccccCCCCCCCCCceee
Q 014571          329 NESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                                    .+.||.|++
T Consensus       187 --------------~~~FD~V~s  195 (322)
T PRK15068        187 --------------LKAFDTVFS  195 (322)
T ss_pred             --------------cCCcCEEEE
Confidence                          245898885

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.61  E-value=0.00018  Score=71.67  Aligned_cols=65  Identities=26%  Similarity=0.294  Sum_probs=55.0

Q ss_pred             ChhHHHHHHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          247 NLPSIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       247 d~~S~lv~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      -+..+++..+|+  .++|.+|||++||+|-.+...+.+  +..+|+|+|+++.-++..++|+++.|++.
T Consensus       146 HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kL--GA~~v~g~DiDp~AV~aa~eNa~~N~v~~  212 (300)
T COG2264         146 HPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKL--GAKKVVGVDIDPQAVEAARENARLNGVEL  212 (300)
T ss_pred             ChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHc--CCceEEEecCCHHHHHHHHHHHHHcCCch
Confidence            345567777776  569999999999999888777776  46789999999999999999999999865

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=97.60  E-value=0.00025  Score=67.01  Aligned_cols=60  Identities=18%  Similarity=0.186  Sum_probs=52.1

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhh
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK  323 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~  323 (422)
                      ++|||++||.|+-+..+++..+ ...|+++|+|+..++.++++++..|+. ++.++..|...
T Consensus         1 ~~vLDiGcG~G~~~~~la~~~~-~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~   61 (224)
T smart00828        1 KRVLDFGCGYGSDLIDLAERHP-HLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAK   61 (224)
T ss_pred             CeEEEECCCCCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEeccccc
Confidence            4799999999999999998763 478999999999999999999998874 58888888743

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.59  E-value=0.00049  Score=66.30  Aligned_cols=115  Identities=17%  Similarity=0.096  Sum_probs=86.7

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD  342 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~  342 (422)
                      -.+||+|||-|..++++|+.- ++--.+|+|+....+..+.+.+.+.|++|+.+++.||..+.....            .
T Consensus        50 pi~lEIGfG~G~~l~~~A~~n-P~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~~l~~~~------------~  116 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKN-PEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVEVLDYLI------------P  116 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHC-CCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHhcC------------C
Confidence            489999999999999999984 567999999999999999999999999999999999998865332            1


Q ss_pred             CCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe-hhh
Q 014571          343 NNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL-TAL  409 (422)
Q Consensus       343 ~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~-t~~  409 (422)
                      .+..|.|.+--|+            |.-+.+=.....       +|...|+..+. |+.+|++-+ |++
T Consensus       117 ~~sl~~I~i~FPD------------PWpKkRH~KRRl-------~~~~fl~~~a~~Lk~gG~l~~aTD~  166 (227)
T COG0220         117 DGSLDKIYINFPD------------PWPKKRHHKRRL-------TQPEFLKLYARKLKPGGVLHFATDN  166 (227)
T ss_pred             CCCeeEEEEECCC------------CCCCcccccccc-------CCHHHHHHHHHHccCCCEEEEEecC
Confidence            2356777774432            221111111122       67777777655 899999999 443

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=97.59  E-value=0.00038  Score=69.33  Aligned_cols=73  Identities=14%  Similarity=0.150  Sum_probs=62.3

Q ss_pred             hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhh
Q 014571          249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK  323 (422)
Q Consensus       249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~  323 (422)
                      ....+...++.+++.+|||+|||+|..+..+++.. +..+++++|. +..++.+++++++.|+. +|+++.+|..+
T Consensus       137 ~~~~l~~~~~~~~~~~vlDiG~G~G~~~~~~~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~  210 (306)
T TIGR02716       137 AIQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK  210 (306)
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCchhHHHHHHHHHC-CCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccC
Confidence            34556667788899999999999999999999986 4689999997 78999999999999984 59999999764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.59  E-value=0.00019  Score=71.71  Aligned_cols=65  Identities=25%  Similarity=0.264  Sum_probs=52.8

Q ss_pred             ChhHHHHHHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          247 NLPSIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       247 d~~S~lv~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      -+..+++..+|.  ..+|.+|||++||+|--+...+.+  +..+|+|+|+++.-++.+++|++..|+..
T Consensus       145 H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~kl--GA~~v~a~DiDp~Av~~a~~N~~~N~~~~  211 (295)
T PF06325_consen  145 HPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKL--GAKKVVAIDIDPLAVEAARENAELNGVED  211 (295)
T ss_dssp             CHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHT--TBSEEEEEESSCHHHHHHHHHHHHTT-TT
T ss_pred             CHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHHcCCCe
Confidence            456667777775  578999999999999877766665  45689999999999999999999999865

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=97.58  E-value=0.00048  Score=68.48  Aligned_cols=95  Identities=17%  Similarity=0.155  Sum_probs=79.6

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      ++..|.++|+...+|.+-|-||.|-.|.+.+++.|+++|+|.++..++.+++++..++ .++.+++.....+......  
T Consensus        15 ~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~-~r~~~v~~~F~~l~~~l~~--   91 (314)
T COG0275          15 VVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD-GRVTLVHGNFANLAEALKE--   91 (314)
T ss_pred             HHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC-CcEEEEeCcHHHHHHHHHh--
Confidence            6788999999999999999999999999999888999999999999999999999987 6788888776655432211  


Q ss_pred             CCccccCCCCCCCCCceeecCCcccc
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                              ..-.++|.||+|=--|+.
T Consensus        92 --------~~i~~vDGiL~DLGVSS~  109 (314)
T COG0275          92 --------LGIGKVDGILLDLGVSSP  109 (314)
T ss_pred             --------cCCCceeEEEEeccCCcc
Confidence                    113578999999887775

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=97.58  E-value=0.00023  Score=69.88  Aligned_cols=62  Identities=19%  Similarity=0.160  Sum_probs=49.9

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCC--cEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDE--GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~--g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      +.++.+|||++||+|..+..+++.....  ..|+++|+|+.+++.++++     ..++.+.++|+...+
T Consensus        83 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~-----~~~~~~~~~d~~~lp  146 (272)
T PRK11088         83 DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR-----YPQVTFCVASSHRLP  146 (272)
T ss_pred             CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh-----CCCCeEEEeecccCC
Confidence            3466789999999999999999876532  3799999999999988764     356888888887643

>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming

Probab=97.58  E-value=0.00013  Score=78.38  Aligned_cols=74  Identities=18%  Similarity=0.353  Sum_probs=66.9

Q ss_pred             CCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571          121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL  200 (422)
Q Consensus       121 ~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v  200 (422)
                      .....|+|+...++.+..|-+||+|||++|+.++++||+|.|.                                ...+.
T Consensus       464 ~p~~rV~v~~~~~~f~~~g~~vfak~V~~ad~~IR~~dEV~vv--------------------------------~~~~~  511 (540)
T TIGR00432       464 YPAWRVAVNEESEPFARKGKSVFAKFIIDCDNNIRANDEVLIV--------------------------------NADDE  511 (540)
T ss_pred             CCceEEEECCcchhhccCCCcccCCccccCCCCCCCCCeEEEE--------------------------------cCCCc
Confidence            3458899999999999999999999999999999999999999                                23456


Q ss_pred             EEEEccCccCHHHHhcccCcceeecc
Q 014571          201 YIGQGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       201 ~Vrvg~a~msreel~~~~~GiaV~~~  226 (422)
                      .+++|++.|+..||.+..+|++|+..
T Consensus       512 llavGra~lsg~em~~~~~G~AVkvR  537 (540)
T TIGR00432       512 LLATGKALLCAEEMMDLNHGQAVKTR  537 (540)
T ss_pred             EEEEEehhcCHHHHHhhcCceEEEEe
Confidence            88999999999999999999999864

This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=97.57  E-value=0.00037  Score=65.62  Aligned_cols=75  Identities=19%  Similarity=0.135  Sum_probs=60.4

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      ..+.+|||+|||+|..+..+++.   ...++++|.++.+++.+++++.+.+..++.+...|+.+.+..            
T Consensus        44 ~~~~~vLdlG~G~G~~~~~l~~~---~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~------------  108 (224)
T TIGR01983        44 LFGLRVLDVGCGGGLLSEPLARL---GANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEK------------  108 (224)
T ss_pred             CCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcC------------
Confidence            45889999999999999888875   246999999999999999999988876788888887765321            


Q ss_pred             CCCCCCCCceee
Q 014571          340 SKDNNYITSQTS  351 (422)
Q Consensus       340 ~~~~~~FD~VLv  351 (422)
                        ..+.||.|++
T Consensus       109 --~~~~~D~i~~  118 (224)
T TIGR01983       109 --GAKSFDVVTC  118 (224)
T ss_pred             --CCCCccEEEe
Confidence              0245888876

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.56  E-value=8.4e-05  Score=66.50  Aligned_cols=78  Identities=14%  Similarity=0.180  Sum_probs=62.9

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      -.|.+++|+|||.|..++..+  |.....|+++|+++..++...+|++.+.+. +.++++|-.+...             
T Consensus        47 iEgkkl~DLgcgcGmLs~a~s--m~~~e~vlGfDIdpeALEIf~rNaeEfEvq-idlLqcdildle~-------------  110 (185)
T KOG3420|consen   47 IEGKKLKDLGCGCGMLSIAFS--MPKNESVLGFDIDPEALEIFTRNAEEFEVQ-IDLLQCDILDLEL-------------  110 (185)
T ss_pred             ccCcchhhhcCchhhhHHHhh--cCCCceEEeeecCHHHHHHHhhchHHhhhh-hheeeeeccchhc-------------
Confidence            368999999999999885444  445679999999999999999999999874 6788887765421             


Q ss_pred             CCCCCCCCceeecCCc
Q 014571          340 SKDNNYITSQTSDSMK  355 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPC  355 (422)
                        ..+.||.++.|+|-
T Consensus       111 --~~g~fDtaviNppF  124 (185)
T KOG3420|consen  111 --KGGIFDTAVINPPF  124 (185)
T ss_pred             --cCCeEeeEEecCCC
Confidence              13679999999984

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=97.55  E-value=0.00018  Score=67.73  Aligned_cols=90  Identities=17%  Similarity=0.090  Sum_probs=64.5

Q ss_pred             EeChhHHHHHHhcCC---CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecch
Q 014571          245 LQNLPSIVTAHALDP---QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA  321 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p---~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da  321 (422)
                      +|..........+..   ..+.+|||++||+|..+.++++.. +..+++++|.++..++.+++++.    .++.++.+|.
T Consensus        15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~-~~~~~~~~D~~~~~~~~~~~~~~----~~~~~~~~d~   89 (240)
T TIGR02072        15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRF-PQAEFIALDISAGMLAQAKTKLS----ENVQFICGDA   89 (240)
T ss_pred             HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhC-CCCcEEEEeChHHHHHHHHHhcC----CCCeEEecch
Confidence            344444434433332   345799999999999999999985 45789999999999988887654    4688888887


Q ss_pred             hhhhhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          322 LKAVRRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      ...+.               ..+.||.|++...
T Consensus        90 ~~~~~---------------~~~~fD~vi~~~~  107 (240)
T TIGR02072        90 EKLPL---------------EDSSFDLIVSNLA  107 (240)
T ss_pred             hhCCC---------------CCCceeEEEEhhh
Confidence            65431               1346899987644

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=97.55  E-value=0.00018  Score=68.35  Aligned_cols=62  Identities=18%  Similarity=0.209  Sum_probs=53.6

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      .+.+..+|.|++||||+-|-.+++.- +.+.|+++|.|+.|++.++++     +.++++..+|.+.+.
T Consensus        27 p~~~~~~v~DLGCGpGnsTelL~~Rw-P~A~i~GiDsS~~Mla~Aa~r-----lp~~~f~~aDl~~w~   88 (257)
T COG4106          27 PLERPRRVVDLGCGPGNSTELLARRW-PDAVITGIDSSPAMLAKAAQR-----LPDATFEEADLRTWK   88 (257)
T ss_pred             CccccceeeecCCCCCHHHHHHHHhC-CCCeEeeccCCHHHHHHHHHh-----CCCCceecccHhhcC
Confidence            45677899999999999999999997 468999999999999998664     467899999998763

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=97.54  E-value=0.00026  Score=74.73  Aligned_cols=91  Identities=16%  Similarity=0.146  Sum_probs=65.5

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      |......+...+.+.++.+|||++||+|..|..+++..   .+|+|+|.++.+++..++..  -..+++.++++|+....
T Consensus        22 ~~~~~~~il~~l~~~~~~~vLDlGcG~G~~~~~la~~~---~~v~giD~s~~~l~~a~~~~--~~~~~i~~~~~d~~~~~   96 (475)
T PLN02336         22 DKEERPEILSLLPPYEGKSVLELGAGIGRFTGELAKKA---GQVIALDFIESVIKKNESIN--GHYKNVKFMCADVTSPD   96 (475)
T ss_pred             CchhhhHHHhhcCccCCCEEEEeCCCcCHHHHHHHhhC---CEEEEEeCCHHHHHHHHHHh--ccCCceEEEEecccccc
Confidence            33334455667777788999999999999999999873   58999999999998765421  12467999999986421


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      ...             ..+.||.|++..+
T Consensus        97 ~~~-------------~~~~fD~I~~~~~  112 (475)
T PLN02336         97 LNI-------------SDGSVDLIFSNWL  112 (475)
T ss_pred             cCC-------------CCCCEEEEehhhh
Confidence            110             1356899988554

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=97.53  E-value=0.00024  Score=74.50  Aligned_cols=72  Identities=21%  Similarity=0.379  Sum_probs=60.7

Q ss_pred             cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571           13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS   92 (422)
Q Consensus        13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (422)
                      .++++.+.+.+.+.||.+..+++++++.+||. +++||||+|++++++++.|.+.         |             +.
T Consensus       147 ~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~-~~~Rvn~~k~~~~~~~~~l~~~---------g-------------~~  203 (434)
T PRK14901        147 HSFPDWLVKLWLEWLGLEEAEQLCKWFNQPPS-LDLRINPLRTSLEEVQAALAEA---------G-------------IT  203 (434)
T ss_pred             hCCcHHHHHHHHHHhCHHHHHHHHHHhCCCCC-eEEEECCCCCCHHHHHHHHHHC---------C-------------Cc
Confidence            35778899999999998889999999999887 7889999999999999888644         4             44


Q ss_pred             cccCCCCCcEEEEeC
Q 014571           93 ESQIPGLEYVVFVKG  107 (422)
Q Consensus        93 ~~~~~~l~~~l~~~~  107 (422)
                      ..+.|.+++.+.++.
T Consensus       204 ~~~~~~~~~~~~~~~  218 (434)
T PRK14901        204 ATPIPGLPQGLRLTG  218 (434)
T ss_pred             eEECCCCCCeEEecC
Confidence            456778899998874

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=97.51  E-value=0.00027  Score=71.94  Aligned_cols=73  Identities=18%  Similarity=0.203  Sum_probs=58.3

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .++.+|||+|||+|..+..+++..+ ...|+++|.++.+++.++++..   ..++.++.+|+...+.             
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~-~~~VtgVD~S~~mL~~A~~k~~---~~~i~~i~gD~e~lp~-------------  174 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVD-AKNVTILDQSPHQLAKAKQKEP---LKECKIIEGDAEDLPF-------------  174 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHhhh---ccCCeEEeccHHhCCC-------------
Confidence            4788999999999999999988764 4799999999999999988754   3568888888875431             


Q ss_pred             CCCCCCCCceee
Q 014571          340 SKDNNYITSQTS  351 (422)
Q Consensus       340 ~~~~~~FD~VLv  351 (422)
                        ..+.||.|++
T Consensus       175 --~~~sFDvVIs  184 (340)
T PLN02490        175 --PTDYADRYVS  184 (340)
T ss_pred             --CCCceeEEEE
Confidence              1346898876

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.47  E-value=0.00058  Score=70.04  Aligned_cols=88  Identities=14%  Similarity=0.020  Sum_probs=71.0

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCC-------------------------------Cc-------EEEEEcCC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRD-------------------------------EG-------EVVAVDRS  295 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~-------------------------------~g-------~V~A~D~s  295 (422)
                      ..+.+.++++.++|-.||.|......|.+..+                               .+       .++++|++
T Consensus       184 l~lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did  263 (381)
T COG0116         184 LLLAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDID  263 (381)
T ss_pred             HHHcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCC
Confidence            35556788999999999999888887766432                               12       47899999


Q ss_pred             hHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          296 HNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       296 ~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      +..++.++.|+++.|+. -|++.++|++.+....               +.+|.|+++||--
T Consensus       264 ~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~---------------~~~gvvI~NPPYG  310 (381)
T COG0116         264 PRHIEGAKANARAAGVGDLIEFKQADATDLKEPL---------------EEYGVVISNPPYG  310 (381)
T ss_pred             HHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCC---------------CcCCEEEeCCCcc
Confidence            99999999999999985 4999999998764321               4579999999974

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=97.45  E-value=7.9e-05  Score=71.47  Aligned_cols=91  Identities=18%  Similarity=0.202  Sum_probs=67.2

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC--cceEEEecchhhhhhccCCCC
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL--KCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~--~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      ....|+.|++|||.|-|-|-.+...++.  +..+|+.+|.+++-++.++-|==.-++  .+|+++.+|+..+...+.   
T Consensus       128 ~~V~~~~G~rVLDtC~GLGYtAi~a~~r--GA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~---  202 (287)
T COG2521         128 ELVKVKRGERVLDTCTGLGYTAIEALER--GAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD---  202 (287)
T ss_pred             heeccccCCEeeeeccCccHHHHHHHHc--CCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC---
Confidence            4456788999999999999877666655  344999999999988776533211111  258999999998875442   


Q ss_pred             CCccccCCCCCCCCCceeecCCccc-cCc
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLH-KEV  360 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg-~G~  360 (422)
                                .+.||.|+-|||.-+ .|.
T Consensus       203 ----------D~sfDaIiHDPPRfS~Age  221 (287)
T COG2521         203 ----------DESFDAIIHDPPRFSLAGE  221 (287)
T ss_pred             ----------ccccceEeeCCCccchhhh
Confidence                      356999999999976 344

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.44  E-value=0.00058  Score=75.91  Aligned_cols=84  Identities=17%  Similarity=0.044  Sum_probs=66.7

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccC-----------------------------------------CCcEEEEEcCChHH
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLR-----------------------------------------DEGEVVAVDRSHNK  298 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~-----------------------------------------~~g~V~A~D~s~~r  298 (422)
                      ++++.++|-+||.|+.....|....                                         ...+|+|+|+++..
T Consensus       189 ~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~a  268 (702)
T PRK11783        189 QEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRV  268 (702)
T ss_pred             CCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHH
Confidence            6789999999999988777765311                                         12379999999999


Q ss_pred             HHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          299 VMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       299 l~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      ++.+++|++..|+.+ |.+.++|++++....             ..+.||.|+++||--
T Consensus       269 v~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~-------------~~~~~d~IvtNPPYg  314 (702)
T PRK11783        269 IQAARKNARRAGVAELITFEVKDVADLKNPL-------------PKGPTGLVISNPPYG  314 (702)
T ss_pred             HHHHHHHHHHcCCCcceEEEeCChhhccccc-------------ccCCCCEEEECCCCc
Confidence            999999999999965 899999998753211             124689999999973

>TIGR00452 methyltransferase, putative

Probab=97.41  E-value=0.001  Score=67.00  Aligned_cols=84  Identities=18%  Similarity=0.142  Sum_probs=55.9

Q ss_pred             ccceEEEeChhHHHH----HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-Ccc
Q 014571          239 LEGEIFLQNLPSIVT----AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-LKC  313 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv----~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-~~n  313 (422)
                      .+|+...=+..|-+.    ...+++.+|.+|||++||+|..+..++..  +...|+++|.|+.++...+...+..+ ..+
T Consensus        95 l~~~~~~~e~~s~~~~~~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~--g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~  172 (314)
T TIGR00452        95 LSGIKIDSEWRSDIKWDRVLPHLSPLKGRTILDVGCGSGYHMWRMLGH--GAKSLVGIDPTVLFLCQFEAVRKLLDNDKR  172 (314)
T ss_pred             cccccCCHHHHHHHHHHHHHHhcCCCCCCEEEEeccCCcHHHHHHHHc--CCCEEEEEcCCHHHHHHHHHHHHHhccCCC
Confidence            345444334444432    33446788999999999999998888865  23589999999999876544333333 245


Q ss_pred             eEEEecchhhh
Q 014571          314 ITTYKLDALKA  324 (422)
Q Consensus       314 v~~~~~Da~~~  324 (422)
                      +.+...|....
T Consensus       173 v~~~~~~ie~l  183 (314)
T TIGR00452       173 AILEPLGIEQL  183 (314)
T ss_pred             eEEEECCHHHC
Confidence            67777766543

Known examples to date are restricted to the proteobacteria.

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=97.41  E-value=0.00047  Score=72.38  Aligned_cols=72  Identities=18%  Similarity=0.191  Sum_probs=60.9

Q ss_pred             cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571           13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS   92 (422)
Q Consensus        13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (422)
                      .++++-+.+++.+.||.+..++|++++..||. +++||||+|++++++++.|.+.         |             +.
T Consensus       132 ~s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~-~~~RvN~~k~~~~~~~~~l~~~---------g-------------~~  188 (431)
T PRK14903        132 YSHPKWLVNYWRSFLPEEAVLRIMEWNQEPLP-TMLRVNSLAITREEVIKILAEE---------G-------------TE  188 (431)
T ss_pred             hcCcHHHHHHHHHHcCHHHHHHHHHHhcCCCC-eeEEeeCCcCCHHHHHHHHHHC---------C-------------Ce
Confidence            45677899999999999999999999999987 4899999999999999988644         3             44


Q ss_pred             cccCCCCCcEEEEeC
Q 014571           93 ESQIPGLEYVVFVKG  107 (422)
Q Consensus        93 ~~~~~~l~~~l~~~~  107 (422)
                      +.++|..++.++++.
T Consensus       189 ~~~~~~~~~~~~~~~  203 (431)
T PRK14903        189 AVPGKHSPFSLIVRK  203 (431)
T ss_pred             eEECCCCCceEEEcC
Confidence            556788899988875

>TIGR00417 speE spermidine synthase

Probab=97.41  E-value=0.00086  Score=65.90  Aligned_cols=79  Identities=14%  Similarity=0.104  Sum_probs=62.4

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC----CcceEEEecchhhhhhccCCCCCCcc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----LKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g----~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      .+.+|||+++|.|+.+..++... +..+|+++|+++..++.+++.+...+    .++++++..|++.+....        
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~-~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~--------  142 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHK-SVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADT--------  142 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCC-CcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhC--------
Confidence            34599999999999888887653 34689999999999999999886653    246888889998765321        


Q ss_pred             ccCCCCCCCCCceeecCC
Q 014571          337 MCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaP  354 (422)
                            .+.||.|++|++
T Consensus       143 ------~~~yDvIi~D~~  154 (270)
T TIGR00417       143 ------ENTFDVIIVDST  154 (270)
T ss_pred             ------CCCccEEEEeCC
Confidence                  356999999976

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=97.39  E-value=0.00048  Score=67.44  Aligned_cols=101  Identities=16%  Similarity=0.074  Sum_probs=78.5

Q ss_pred             ceEEEeChh-HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571          241 GEIFLQNLP-SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL  319 (422)
Q Consensus       241 G~~~~Qd~~-S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~  319 (422)
                      |.=++.|.. -.-++..+++++++.||++++|.|+-|..+++..   .+|+|+|+++..+..+++...  ...|++++.+
T Consensus         9 GQnFL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~---~~v~aiEiD~~l~~~L~~~~~--~~~n~~vi~~   83 (259)
T COG0030           9 GQNFLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERA---ARVTAIEIDRRLAEVLKERFA--PYDNLTVING   83 (259)
T ss_pred             ccccccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEEeCHHHHHHHHHhcc--cccceEEEeC
Confidence            444444443 2456778889999999999999999999999984   579999999999999999766  3578999999


Q ss_pred             chhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571          320 DALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       320 Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      |+.+......              ..+++|+-.-|..=+.-
T Consensus        84 DaLk~d~~~l--------------~~~~~vVaNlPY~Issp  110 (259)
T COG0030          84 DALKFDFPSL--------------AQPYKVVANLPYNISSP  110 (259)
T ss_pred             chhcCcchhh--------------cCCCEEEEcCCCcccHH
Confidence            9988754210              04678888888776554

>KOG2523 consensus Predicted RNA-binding protein with PUA domain [Translation, ribosomal structure and biogenesis]

Probab=97.38  E-value=0.00011  Score=66.40  Aligned_cols=96  Identities=26%  Similarity=0.279  Sum_probs=71.4

Q ss_pred             CcEEEEe-CCCCcccCC--CCCCCCCCCEEEEccccHHHHHcCCccccCceeec----cCCccCCCEEEEeeccccccCC
Q 014571          100 EYVVFVK-GSGPHTIDY--GYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMAC----SSHVEKGDVVAVSVAVEQPTLD  172 (422)
Q Consensus       100 ~~~l~~~-~~gp~~~~~--~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~----~~~~~~gd~V~v~~~l~~~~~~  172 (422)
                      -+++++. ..||+-...  -..-....+++-||++|-+.|++||+++-||+...    .+.+++|+.|+|.+        
T Consensus        66 G~~~fF~~~dg~~~PTLRllhk~p~~~~~~qvD~GAIkfvlsGAnIMcPGlts~g~~l~~~~ekd~~V~i~a--------  137 (181)
T KOG2523|consen   66 GEVLFFCHRDGPYIPTLRLLHKYPFIFPHVQVDRGAIKFVLSGANIMCPGLTSPGAKLPPGVEKDTIVAIMA--------  137 (181)
T ss_pred             CEEEEEEecCCCccchhHHHhhCCCccceEEecCcceeeeecCCceEcccCCCCcccCCCCccCCCEEEEEe--------
Confidence            4555553 567774211  00112245788899999999999999999999864    45678888999984        


Q ss_pred             CCchhhhhhhcccCCCCCCCcccCCCceEEEEccCccCHHHHhcccCcceeecc
Q 014571          173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       173 p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~~~~~GiaV~~~  226 (422)
                                             +.+.-.+++|.++|+.+|+....+|+.++.-
T Consensus       138 -----------------------eGK~~alAiG~~~ms~kei~s~nKGiGIE~~  168 (181)
T KOG2523|consen  138 -----------------------EGKEHALAIGLTKMSAKEIKSVNKGIGIENY  168 (181)
T ss_pred             -----------------------cCchhhhhhhhhhhcHHHHHhhccCCceEEE
Confidence                                   4444578999999999999999999988753

>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]

Probab=97.37  E-value=0.00013  Score=73.29  Aligned_cols=91  Identities=16%  Similarity=0.135  Sum_probs=72.8

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHH-------HHHHHHHHhCCcc--eEEEecc
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVM-------DIQKLAAEMGLKC--ITTYKLD  320 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~-------~l~~~l~r~g~~n--v~~~~~D  320 (422)
                      |-+.+....++||+.|.|=..|+|+.-...|..   .+.|++-|++-.+++       .++.|.+.+|...  +.++.+|
T Consensus       197 Sli~AN~Amv~pGdivyDPFVGTGslLvsaa~F---Ga~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D  273 (421)
T KOG2671|consen  197 SLIMANQAMVKPGDIVYDPFVGTGSLLVSAAHF---GAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTAD  273 (421)
T ss_pred             HHHHhhhhccCCCCEEecCccccCceeeehhhh---cceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeec
Confidence            445566677899999999999999987766665   589999999988887       5789999999643  7888899


Q ss_pred             hhhhhhccCCCCCCccccCCCCCCCCCceeecCCccc
Q 014571          321 ALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       321 a~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                      .++.+..              ....||.|+||||.--
T Consensus       274 ~sn~~~r--------------sn~~fDaIvcDPPYGV  296 (421)
T KOG2671|consen  274 FSNPPLR--------------SNLKFDAIVCDPPYGV  296 (421)
T ss_pred             ccCcchh--------------hcceeeEEEeCCCcch
Confidence            8876532              1467999999999743

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.37  E-value=0.0017  Score=65.09  Aligned_cols=87  Identities=22%  Similarity=0.302  Sum_probs=61.3

Q ss_pred             ccccCCCCccccccceEEEeChhHH-HHHHhcCCCCCCeEEEecCCCChhHHHH-HhccCCCcEEEEEcCChHHHHHHHH
Q 014571          227 NRIFQLPSFYDVLEGEIFLQNLPSI-VTAHALDPQKGERILDMCAAPGGKTTAI-ASLLRDEGEVVAVDRSHNKVMDIQK  304 (422)
Q Consensus       227 ~~~~~~p~~~~~~~G~~~~Qd~~S~-lv~~~L~p~pg~~VLD~CAgpGgKT~~l-a~l~~~~g~V~A~D~s~~rl~~l~~  304 (422)
                      .-.+++|..=-+.+|. .+|.++-. -+....+.++|.+||=++|||=|-.+.+ |+.| +..+|+..|.++.|++.+++
T Consensus       135 dfc~KLPd~vs~eeGA-l~ePLsV~~HAcr~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~-GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  135 DFCYKLPDNVSFEEGA-LIEPLSVGVHACRRAGVKKGSKVLVLGAGPIGLLTGLVAKAM-GASDVVITDLVANRLELAKK  212 (354)
T ss_pred             HheeeCCCCCchhhcc-cccchhhhhhhhhhcCcccCCeEEEECCcHHHHHHHHHHHHc-CCCcEEEeecCHHHHHHHHH
Confidence            3457777644446774 45766522 2334456889999999999996665555 5555 46899999999999998876


Q ss_pred             HHHHhCCcceEEEec
Q 014571          305 LAAEMGLKCITTYKL  319 (422)
Q Consensus       305 ~l~r~g~~nv~~~~~  319 (422)
                          +|.+.+.....
T Consensus       213 ----~Ga~~~~~~~~  223 (354)
T KOG0024|consen  213 ----FGATVTDPSSH  223 (354)
T ss_pred             ----hCCeEEeeccc
Confidence                88876555444

>PLN02366 spermidine synthase

Probab=97.37  E-value=0.0013  Score=66.12  Aligned_cols=82  Identities=11%  Similarity=0.117  Sum_probs=64.9

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC--C--cceEEEecchhhhhhccCCCCCCc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG--L--KCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g--~--~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      ..+.+|||+++|.|+-+..+++. .+..+|+.+|+++..++.+++.+...+  +  ++++++.+|++.+....       
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~-~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-------  161 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARH-SSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-------  161 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-------
Confidence            34679999999999998888876 345689999999999999999886542  3  46999999998875321       


Q ss_pred             cccCCCCCCCCCceeecCCc
Q 014571          336 NMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaPC  355 (422)
                            ..+.||.|++|.+-
T Consensus       162 ------~~~~yDvIi~D~~d  175 (308)
T PLN02366        162 ------PEGTYDAIIVDSSD  175 (308)
T ss_pred             ------cCCCCCEEEEcCCC
Confidence                  13469999999753

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.36  E-value=4.1e-05  Score=62.94  Aligned_cols=72  Identities=18%  Similarity=0.202  Sum_probs=47.3

Q ss_pred             EEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCC
Q 014571          266 LDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNY  345 (422)
Q Consensus       266 LD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~  345 (422)
                      ||++||+|.-+..+++.. +.++++++|+|+.+++.+++++...+..+......+.......             ...+.
T Consensus         1 LdiGcG~G~~~~~l~~~~-~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~   66 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEEL-PDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDY-------------DPPES   66 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC--EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---C-------------CC---
T ss_pred             CEeCccChHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhc-------------ccccc
Confidence            799999999999999986 5789999999999999999999998876655555443322110             11257


Q ss_pred             CCceee
Q 014571          346 ITSQTS  351 (422)
Q Consensus       346 FD~VLv  351 (422)
                      ||.|++
T Consensus        67 fD~V~~   72 (99)
T PF08242_consen   67 FDLVVA   72 (99)
T ss_dssp             -SEEEE
T ss_pred             cceehh
Confidence            999986

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK03612 spermidine synthase; Provisional

Probab=97.35  E-value=0.00063  Score=73.07  Aligned_cols=82  Identities=15%  Similarity=0.073  Sum_probs=63.3

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH--HHHh-----CCcceEEEecchhhhhhccCCCC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL--AAEM-----GLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~--l~r~-----g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      +++.+|||+++|.|.-+..+++. ++..+|+++|++++.++.++++  +...     .-++++++.+|++++....    
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~-~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~----  370 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKY-PDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL----  370 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhC-CCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC----
Confidence            45679999999999988888864 3336999999999999999984  3332     2256999999999865321    


Q ss_pred             CCccccCCCCCCCCCceeecCCcc
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                                .+.||.|++|.|-.
T Consensus       371 ----------~~~fDvIi~D~~~~  384 (521)
T PRK03612        371 ----------AEKFDVIIVDLPDP  384 (521)
T ss_pred             ----------CCCCCEEEEeCCCC
Confidence                      34699999997643

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=97.33  E-value=0.00096  Score=69.86  Aligned_cols=71  Identities=14%  Similarity=0.102  Sum_probs=59.1

Q ss_pred             cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571           13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS   92 (422)
Q Consensus        13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (422)
                      .++++.+.+++.+.|| +..+++++++.+||.. ++||||+|++++++++.|..+         |             +.
T Consensus       141 ~s~P~wl~~~~~~~~~-~~~~~~~~~~~~~~~~-~~Rvn~~k~~~~~~~~~l~~~---------~-------------~~  196 (427)
T PRK10901        141 YNHPSWLIKRLKKAYP-EQWQAILAANNQRPPM-WLRVNRRHHSRDAYLALLAEA---------G-------------IE  196 (427)
T ss_pred             hcCCHHHHHHHHHHhH-HHHHHHHHHcCCCCCe-EEEEcCCCCCHHHHHHHHHhC---------C-------------Cc
Confidence            3678889999999996 5689999999999885 899999999999999988744         3             44


Q ss_pred             cccCCCCCcEEEEeC
Q 014571           93 ESQIPGLEYVVFVKG  107 (422)
Q Consensus        93 ~~~~~~l~~~l~~~~  107 (422)
                      ..++|..++++.++.
T Consensus       197 ~~~~~~~~~~~~~~~  211 (427)
T PRK10901        197 AFPHAVGPDAIRLET  211 (427)
T ss_pred             eeecCCCCCeEEECC
Confidence            556888999998874

>PRK01581 speE spermidine synthase; Validated

Probab=97.30  E-value=0.00083  Score=68.85  Aligned_cols=78  Identities=12%  Similarity=0.001  Sum_probs=58.8

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH--HH---H--hCCcceEEEecchhhhhhccCCCCCC
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL--AA---E--MGLKCITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~--l~---r--~g~~nv~~~~~Da~~~~~~~~~~~~~  334 (422)
                      ..+||++++|.|+-+..+++. .+..+|+++|+++..++.+++.  +.   +  +.-++++++.+|+..+...       
T Consensus       151 PkrVLIIGgGdG~tlrelLk~-~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~-------  222 (374)
T PRK01581        151 PKRVLILGGGDGLALREVLKY-ETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS-------  222 (374)
T ss_pred             CCEEEEECCCHHHHHHHHHhc-CCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh-------
Confidence            459999999999966666654 3457999999999999999962  21   2  2236799999999987532       


Q ss_pred             ccccCCCCCCCCCceeecCC
Q 014571          335 PNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDaP  354 (422)
                             ..+.||.|++|.|
T Consensus       223 -------~~~~YDVIIvDl~  235 (374)
T PRK01581        223 -------PSSLYDVIIIDFP  235 (374)
T ss_pred             -------cCCCccEEEEcCC
Confidence                   1356999999965

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=97.30  E-value=0.0011  Score=69.25  Aligned_cols=96  Identities=17%  Similarity=0.129  Sum_probs=68.2

Q ss_pred             cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571           13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS   92 (422)
Q Consensus        13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (422)
                      .++++.+.+++.+.|+ +..+++++++..||. +++||||+|++++++++.|.++         |             +.
T Consensus       135 ~s~P~wl~~~~~~~~~-~~~~~~l~~~~~~~~-~~~Rvn~~k~~~~~~~~~l~~~---------g-------------~~  190 (426)
T TIGR00563       135 YLHPEWLVKRLQKAYP-GQWQSICEANNQRPP-MWLRINRTKHSRDEWLALLAEA---------G-------------MK  190 (426)
T ss_pred             cCCCHHHHHHHHHHhH-HHHHHHHHHhCCCCC-eEEEEcCCcCCHHHHHHHHHhc---------C-------------Cc
Confidence            3678889999999895 458899999999986 6799999999999999888654         4             44


Q ss_pred             cccCCCCCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHH
Q 014571           93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAV  136 (422)
Q Consensus        93 ~~~~~~l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaV  136 (422)
                      +.++|..++.+.++.  |..+.  ..+....-.+.|...++..+
T Consensus       191 ~~~~~~~~~~~~~~~--~~~~~--~~~~~~~G~~~~Qd~~s~~~  230 (426)
T TIGR00563       191 GFPHDLAPDAVRLET--PAAVH--ALPGFEEGWVTVQDASAQWV  230 (426)
T ss_pred             eeeCCCCCCeEEECC--CCCcc--cCchhhCCeEEEECHHHHHH
Confidence            567888899988863  32221  11223445556655554444

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=97.25  E-value=0.0011  Score=63.59  Aligned_cols=102  Identities=17%  Similarity=0.143  Sum_probs=83.6

Q ss_pred             EEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecch
Q 014571          243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDA  321 (422)
Q Consensus       243 ~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da  321 (422)
                      ..+-+.-.++...++..-.+.++||++.=+|--++..|..+...|+|+|+|+++.-.+...+..+..|+ +.|.++.+++
T Consensus        55 m~v~~d~g~fl~~li~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a  134 (237)
T KOG1663|consen   55 MLVGPDKGQFLQMLIRLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPA  134 (237)
T ss_pred             eecChHHHHHHHHHHHHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecch
Confidence            344455667787788777889999999999999999999999999999999999999999999999997 5699999988


Q ss_pred             hhhhhccCCCCCCccccCCCCCCCCCceeecC
Q 014571          322 LKAVRRKNESNDEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDa  353 (422)
                      .......-..         ...+.||.+++|+
T Consensus       135 ~esLd~l~~~---------~~~~tfDfaFvDa  157 (237)
T KOG1663|consen  135 LESLDELLAD---------GESGTFDFAFVDA  157 (237)
T ss_pred             hhhHHHHHhc---------CCCCceeEEEEcc
Confidence            7655432211         1256799999986

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=97.25  E-value=0.00055  Score=63.58  Aligned_cols=61  Identities=25%  Similarity=0.274  Sum_probs=54.4

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhh
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA  324 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~  324 (422)
                      .+|||++||.|..-..+++- +=++.++++|.|++.++.++..+++-|++| |++.+.|.+..
T Consensus        69 ~~VlDLGtGNG~~L~~L~~e-gf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~  130 (227)
T KOG1271|consen   69 DRVLDLGTGNGHLLFQLAKE-GFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDP  130 (227)
T ss_pred             cceeeccCCchHHHHHHHHh-cCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCC
Confidence            49999999999998888876 235779999999999999999999999988 99999998764

>PRK05429 gamma-glutamyl kinase; Provisional

Probab=97.24  E-value=0.00048  Score=70.95  Aligned_cols=64  Identities=28%  Similarity=0.462  Sum_probs=58.1

Q ss_pred             CCCCEEEEccccHHHH-HcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCc
Q 014571          121 KPPKEVIVSRKCAEAV-LRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSG  199 (422)
Q Consensus       121 ~~~k~ViVd~~~~eaV-lrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~  199 (422)
                      .....|+||.+|++|+ .+||.+++|||+..+..|++||.|.|+                                .+.+
T Consensus       278 ~~~g~i~vd~gA~~al~~~g~sLl~~Gi~~v~g~f~~gd~V~i~--------------------------------~~~g  325 (372)
T PRK05429        278 QPAGEIVVDAGAVKALLERGKSLLPAGVTAVEGDFSRGDVVRIV--------------------------------DPDG  325 (372)
T ss_pred             CCCCeEEECccHHHHHHhcCCccCccchhheECcccCCCEEEEE--------------------------------CCCC
Confidence            3567899999999999 889999999999999999999999999                                3457


Q ss_pred             eEEEEccCccCHHHHhc
Q 014571          200 LYIGQGTAMMSRAGIFR  216 (422)
Q Consensus       200 v~Vrvg~a~msreel~~  216 (422)
                      ..|+.|.+.++.+++.+
T Consensus       326 ~~va~G~~~~~s~e~~~  342 (372)
T PRK05429        326 REIARGLVNYSSDELRR  342 (372)
T ss_pred             CEEEEEEecCCHHHHHH
Confidence            78999999999999875

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=97.22  E-value=0.00099  Score=62.39  Aligned_cols=71  Identities=13%  Similarity=0.126  Sum_probs=53.7

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      ++||.+|||++||.|..-.++.+.  .+...+++|+++.++....++    |   +.++++|...-...+          
T Consensus        11 I~pgsrVLDLGCGdG~LL~~L~~~--k~v~g~GvEid~~~v~~cv~r----G---v~Viq~Dld~gL~~f----------   71 (193)
T PF07021_consen   11 IEPGSRVLDLGCGDGELLAYLKDE--KQVDGYGVEIDPDNVAACVAR----G---VSVIQGDLDEGLADF----------   71 (193)
T ss_pred             cCCCCEEEecCCCchHHHHHHHHh--cCCeEEEEecCHHHHHHHHHc----C---CCEEECCHHHhHhhC----------
Confidence            467999999999999888777775  357899999999998766652    4   568889887643221          


Q ss_pred             CCCCCCCCCceee
Q 014571          339 NSKDNNYITSQTS  351 (422)
Q Consensus       339 ~~~~~~~FD~VLv  351 (422)
                         ....||.|++
T Consensus        72 ---~d~sFD~VIl   81 (193)
T PF07021_consen   72 ---PDQSFDYVIL   81 (193)
T ss_pred             ---CCCCccEEeh
Confidence               1456898887

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.18  E-value=0.00072  Score=68.60  Aligned_cols=78  Identities=22%  Similarity=0.212  Sum_probs=58.7

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +.+|.++||++|+|||.|-.+++.   .++|+|+|..+     +...+.  .-.+|+....|+......           
T Consensus       209 ~~~g~~vlDLGAsPGGWT~~L~~r---G~~V~AVD~g~-----l~~~L~--~~~~V~h~~~d~fr~~p~-----------  267 (357)
T PRK11760        209 LAPGMRAVDLGAAPGGWTYQLVRR---GMFVTAVDNGP-----MAQSLM--DTGQVEHLRADGFKFRPP-----------  267 (357)
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHc---CCEEEEEechh-----cCHhhh--CCCCEEEEeccCcccCCC-----------
Confidence            578999999999999999999987   46999999543     223322  235688888888664321           


Q ss_pred             CCCCCCCCCceeecCCccccCch
Q 014571          339 NSKDNNYITSQTSDSMKLHKEVP  361 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~l  361 (422)
                          ...+|.++||.-|.-..+.
T Consensus       268 ----~~~vDwvVcDmve~P~rva  286 (357)
T PRK11760        268 ----RKNVDWLVCDMVEKPARVA  286 (357)
T ss_pred             ----CCCCCEEEEecccCHHHHH
Confidence                2458999999999887664

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.15  E-value=0.0027  Score=68.00  Aligned_cols=119  Identities=15%  Similarity=0.076  Sum_probs=84.6

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      .+..+||+|||-|+.++++|... ++..++|+|++...+..+.+.+++.|++|+.++..|+..+....            
T Consensus       347 ~~p~~lEIG~G~G~~~~~~A~~~-p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~------------  413 (506)
T PRK01544        347 KRKVFLEIGFGMGEHFINQAKMN-PDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDL------------  413 (506)
T ss_pred             CCceEEEECCCchHHHHHHHHhC-CCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhc------------
Confidence            57789999999999999999985 45799999999999999999999999999999998876543221            


Q ss_pred             CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe-hhhHHH
Q 014571          341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL-TALIES  412 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~-t~~~~~  412 (422)
                       ..+.+|.|.+-              -|+-|.+-+  +.+ +++  .|.+.|+.... |+.+|.+-+ |++-+=
T Consensus       414 -~~~sv~~i~i~--------------FPDPWpKkr--h~k-rRl--~~~~fl~~~~~~Lk~gG~i~~~TD~~~y  467 (506)
T PRK01544        414 -PNNSLDGIYIL--------------FPDPWIKNK--QKK-KRI--FNKERLKILQDKLKDNGNLVFASDIENY  467 (506)
T ss_pred             -CcccccEEEEE--------------CCCCCCCCC--Ccc-ccc--cCHHHHHHHHHhcCCCCEEEEEcCCHHH
Confidence             12446777763              344431111  111 111  45566665544 788998887 765543

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=97.14  E-value=0.0016  Score=60.47  Aligned_cols=55  Identities=13%  Similarity=0.175  Sum_probs=43.4

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      +++.+|||++||+|..+..+++..  ...++++|.++.+++.+++       .+++++++|+..
T Consensus        12 ~~~~~iLDiGcG~G~~~~~l~~~~--~~~~~giD~s~~~i~~a~~-------~~~~~~~~d~~~   66 (194)
T TIGR02081        12 PPGSRVLDLGCGDGELLALLRDEK--QVRGYGIEIDQDGVLACVA-------RGVNVIQGDLDE   66 (194)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHhcc--CCcEEEEeCCHHHHHHHHH-------cCCeEEEEEhhh
Confidence            478899999999999998887653  3468999999998887754       246777788654

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.11  E-value=0.0017  Score=61.30  Aligned_cols=83  Identities=19%  Similarity=0.239  Sum_probs=68.0

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .+++|++||=++|+.|.-.+|++...+ .|.|+|+|.++...+.+-..+++  -+||.++..||+++.. ..        
T Consensus        73 pi~~g~~VLYLGAasGTTvSHVSDIv~-~G~iYaVEfs~R~~reLl~~a~~--R~Ni~PIL~DA~~P~~-Y~--------  140 (231)
T COG1889          73 PIKEGSKVLYLGAASGTTVSHVSDIVG-EGRIYAVEFSPRPMRELLDVAEK--RPNIIPILEDARKPEK-YR--------  140 (231)
T ss_pred             CcCCCCEEEEeeccCCCcHhHHHhccC-CCcEEEEEecchhHHHHHHHHHh--CCCceeeecccCCcHH-hh--------
Confidence            367999999999999999999999987 89999999999999998888877  4789999999997532 11        


Q ss_pred             cCCCCCCCCCceeecCCc
Q 014571          338 CNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPC  355 (422)
                         ..-+..|+|..|.--
T Consensus       141 ---~~Ve~VDviy~DVAQ  155 (231)
T COG1889         141 ---HLVEKVDVIYQDVAQ  155 (231)
T ss_pred             ---hhcccccEEEEecCC
Confidence               122446888888643

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=97.09  E-value=0.0018  Score=61.59  Aligned_cols=62  Identities=15%  Similarity=0.053  Sum_probs=47.3

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHH------------HhCCcceEEEecchhhh
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA------------EMGLKCITTYKLDALKA  324 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~------------r~g~~nv~~~~~Da~~~  324 (422)
                      .+|.+|||++||.|.-+..+|+.   .-.|+|+|+|+..++.+.+...            +..-.+|+++++|...+
T Consensus        33 ~~~~rvLd~GCG~G~da~~LA~~---G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~  106 (213)
T TIGR03840        33 PAGARVFVPLCGKSLDLAWLAEQ---GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFAL  106 (213)
T ss_pred             CCCCeEEEeCCCchhHHHHHHhC---CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCC
Confidence            57889999999999999999986   4589999999999997643211            01113578888887664

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=97.01  E-value=0.0015  Score=64.12  Aligned_cols=115  Identities=15%  Similarity=0.060  Sum_probs=74.2

Q ss_pred             CCCCeEEEecCCCChh----HHHHHhccCC----CcEEEEEcCChHHHHHHHHHHH---H-hCC----------------
Q 014571          260 QKGERILDMCAAPGGK----TTAIASLLRD----EGEVVAVDRSHNKVMDIQKLAA---E-MGL----------------  311 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgK----T~~la~l~~~----~g~V~A~D~s~~rl~~l~~~l~---r-~g~----------------  311 (422)
                      .++.+|||++||+|.-    +..+++....    ..+|+|+|+|+.+++.+++.+-   . -++                
T Consensus        98 ~~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~  177 (264)
T smart00138       98 GRRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKY  177 (264)
T ss_pred             CCCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeE
Confidence            4567999999999974    4445554432    4799999999999999987531   0 011                


Q ss_pred             -------cceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchh
Q 014571          312 -------KCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGEC  384 (422)
Q Consensus       312 -------~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l  384 (422)
                             .+|.+.++|....+.               ..+.||.|+|    ...-.            .|.         
T Consensus       178 ~v~~~ir~~V~F~~~dl~~~~~---------------~~~~fD~I~c----rnvl~------------yf~---------  217 (264)
T smart00138      178 RVKPELKERVRFAKHNLLAESP---------------PLGDFDLIFC----RNVLI------------YFD---------  217 (264)
T ss_pred             EEChHHhCcCEEeeccCCCCCC---------------ccCCCCEEEe----chhHH------------hCC---------
Confidence                   246777777654321               1356999986    21111            111         


Q ss_pred             HHHHHHHHHHhcc-ceeccEEEehhhHHHHHh
Q 014571          385 GMAQEEINALVVG-LRIQKVLVLTALIESFLM  415 (422)
Q Consensus       385 ~~~Q~~IL~~a~~-lr~~~~~~~t~~~~~~~~  415 (422)
                      .+.|.+++++... |+.||.|++ .|.|+++-
T Consensus       218 ~~~~~~~l~~l~~~L~pGG~L~l-g~~E~~~~  248 (264)
T smart00138      218 EPTQRKLLNRFAEALKPGGYLFL-GHSESLPG  248 (264)
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEE-ECcccCCC
Confidence            1356677777755 899999887 56677654

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.01  E-value=0.00071  Score=63.08  Aligned_cols=61  Identities=15%  Similarity=0.041  Sum_probs=55.1

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR  326 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~  326 (422)
                      +.+.|++||+|-.+...|..   .-+|+|+++++++...+++|+.--|..|++++.+|++....
T Consensus        34 d~~~DLGaGsGiLs~~Aa~~---A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~f   94 (252)
T COG4076          34 DTFADLGAGSGILSVVAAHA---AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDF   94 (252)
T ss_pred             hceeeccCCcchHHHHHHhh---hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccc
Confidence            78999999999998887776   35899999999999999999988899999999999987654

>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]

Probab=97.00  E-value=0.00059  Score=64.88  Aligned_cols=99  Identities=16%  Similarity=0.060  Sum_probs=68.5

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      +.+.|.|.+|...+||.-|.||.|..|.+.- +..+++|+|+++-.-+.++...+.+=-+.++.+.+...+...-...  
T Consensus        35 vl~~lspv~g~sf~DmTfGagGHt~~ilqk~-se~k~yalDrDP~A~~La~~~s~el~~~~l~a~Lg~Fs~~~~l~~~--  111 (303)
T KOG2782|consen   35 VLDILSPVRGRSFVDMTFGAGGHTSSILQKH-SELKNYALDRDPVARKLAHFHSDELMHPTLKAVLGNFSYIKSLIAD--  111 (303)
T ss_pred             HHHHcCCCCCceEEEEeccCCcchHHHHHhC-cHhhhhhhccChHHHHHHHHhhHhhcchhHHHHHhhhHHHHHHHHH--
Confidence            6788999999999999999999999999984 5689999999987666655554333222233333332222211111  


Q ss_pred             CCccccCCCCCCCCCceeecCCccccCc
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                            .......||.||.|--||+...
T Consensus       112 ------~gl~~~~vDGiLmDlGcSSMQ~  133 (303)
T KOG2782|consen  112 ------TGLLDVGVDGILMDLGCSSMQV  133 (303)
T ss_pred             ------hCCCcCCcceEEeecCcccccc
Confidence                  1123567999999999999743

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=96.97  E-value=0.0065  Score=61.76  Aligned_cols=114  Identities=13%  Similarity=0.123  Sum_probs=67.0

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC----------cceEEEecchhhhhhccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL----------KCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~----------~nv~~~~~Da~~~~~~~~~  330 (422)
                      ++.+|||||||-||=..-....  +-+.++++|++..-++.++++.+.+.-          -...++.+|..........
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            8899999999999977766654  468999999999999999998844321          1245566665432211100


Q ss_pred             CCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                      .         .....||.|=|     .-+.                ...  -+--+.-+.+|+++.. |+.||+.+-|.
T Consensus       140 ~---------~~~~~FDvVSc-----QFal----------------HY~--Fese~~ar~~l~Nvs~~Lk~GG~FIgT~  186 (331)
T PF03291_consen  140 P---------PRSRKFDVVSC-----QFAL----------------HYA--FESEEKARQFLKNVSSLLKPGGYFIGTT  186 (331)
T ss_dssp             S---------STTS-EEEEEE-----ES-G----------------GGG--GSSHHHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred             c---------ccCCCcceeeh-----HHHH----------------HHh--cCCHHHHHHHHHHHHHhcCCCCEEEEEe
Confidence            0         01245666544     1111                111  0111233568998865 99999999864

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=96.90  E-value=0.0032  Score=54.97  Aligned_cols=57  Identities=16%  Similarity=0.134  Sum_probs=49.9

Q ss_pred             eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecch
Q 014571          264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDA  321 (422)
Q Consensus       264 ~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da  321 (422)
                      +|||++|+.|..+..+++.. +.++|+++|.++...+.++++++..++.++.++....
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~-~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al   57 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKG-AEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAV   57 (143)
T ss_pred             CEEEccCCccHHHHHHHHhC-CCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeee
Confidence            48999999999999998874 5579999999999999999999999888888777654

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK04270 H/ACA RNA-protein complex component Cbf5p; Reviewed

Probab=96.88  E-value=0.002  Score=64.65  Aligned_cols=73  Identities=32%  Similarity=0.586  Sum_probs=64.5

Q ss_pred             CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571          122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY  201 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~  201 (422)
                      +.+.|+|+..+++++++|+.++.||+..++..++.||.|.++.                                ..+.+
T Consensus       224 ~LP~V~Lde~aa~~I~nG~~L~~~gi~~~~~~~~~gd~V~I~~--------------------------------~~G~~  271 (300)
T PRK04270        224 HLPKIIIKDSAVDAIAHGAPLYAPGIAKLEKGIKKGDLVAVFT--------------------------------LKGEL  271 (300)
T ss_pred             hCCceEECHHHHHHHHcCCccccCCceecccccCCCCEEEEEe--------------------------------CCCcE
Confidence            4578999999999999999999999998887788899888882                                24679


Q ss_pred             EEEccCccCHHHHhcccCcceeecc
Q 014571          202 IGQGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       202 Vrvg~a~msreel~~~~~GiaV~~~  226 (422)
                      +++|.+.++++++.+..+|++++..
T Consensus       272 LAIG~~~~ss~el~~~~kG~~vk~~  296 (300)
T PRK04270        272 VALGKALMDSDEILKAEKGIVVDLE  296 (300)
T ss_pred             EEEEEEccCHHHHHhcCCceEEEEE
Confidence            9999999999999999999999864

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=96.88  E-value=0.0032  Score=66.18  Aligned_cols=96  Identities=19%  Similarity=0.202  Sum_probs=70.0

Q ss_pred             cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571           13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS   92 (422)
Q Consensus        13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (422)
                      .++++-+.+++.+.||.+..+++++++..||.. ++||||+|++++++.+.|.+.         |             +.
T Consensus       147 ~~~P~w~~~~~~~~~g~~~~~~~l~~~~~~~~~-~~Rvn~~k~~~~~~~~~l~~~---------g-------------~~  203 (444)
T PRK14902        147 YSHPVWLVKRWIDQYGEEKAEKILESLNEPPKA-SIRVNTLKISVEELIEKLEEE---------G-------------YE  203 (444)
T ss_pred             hCChHHHHHHHHHHhCHHHHHHHHHHcCCCCCe-EEEEcCCCCCHHHHHHHHHHc---------C-------------ce
Confidence            357888999999999998899999999988865 899999999999998877644         3             44


Q ss_pred             cccCCCCCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHH
Q 014571           93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAV  136 (422)
Q Consensus        93 ~~~~~~l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaV  136 (422)
                      +.++|..++.+.++. ++..    ..+....-.+.+....+..+
T Consensus       204 ~~~~~~~~~~~~~~~-~~~~----~~~~~~~G~~~~qd~~s~lv  242 (444)
T PRK14902        204 VEESLLSPEALVIEK-GNIA----GTDLFKDGLITIQDESSMLV  242 (444)
T ss_pred             eEEcCCCCCeEEEeC-CCcc----cChHHhCceEEEEChHHHHH
Confidence            566788999999875 3221    11222344555555554444

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=96.87  E-value=0.0042  Score=57.96  Aligned_cols=76  Identities=17%  Similarity=0.198  Sum_probs=60.6

Q ss_pred             eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCC
Q 014571          264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDN  343 (422)
Q Consensus       264 ~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~  343 (422)
                      +++|+++|.|-=...+|-.. +..+++-+|.+.+|+..+++-.+.+|++|+++++.++...                ...
T Consensus        51 ~~lDiGSGaGfPGipLaI~~-p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~----------------~~~  113 (184)
T PF02527_consen   51 KVLDIGSGAGFPGIPLAIAR-PDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEP----------------EYR  113 (184)
T ss_dssp             EEEEETSTTTTTHHHHHHH--TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHT----------------TTT
T ss_pred             eEEecCCCCCChhHHHHHhC-CCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeeccc----------------ccC
Confidence            89999999998888888765 5689999999999999999999999999999999988761                014


Q ss_pred             CCCCceeecCCcc
Q 014571          344 NYITSQTSDSMKL  356 (422)
Q Consensus       344 ~~FD~VLvDaPCS  356 (422)
                      ..||.|..=|=++
T Consensus       114 ~~fd~v~aRAv~~  126 (184)
T PF02527_consen  114 ESFDVVTARAVAP  126 (184)
T ss_dssp             T-EEEEEEESSSS
T ss_pred             CCccEEEeehhcC
Confidence            5688888755443

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=96.86  E-value=0.0019  Score=62.41  Aligned_cols=88  Identities=25%  Similarity=0.228  Sum_probs=59.2

Q ss_pred             HHHHHHhcCCCCCC--eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC----C-----cceEEEe
Q 014571          250 SIVTAHALDPQKGE--RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----L-----KCITTYK  318 (422)
Q Consensus       250 S~lv~~~L~p~pg~--~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g----~-----~nv~~~~  318 (422)
                      ....+.+..+++|.  +|||++||-|.=++.+|.+   .++|+++|.|+-....++.-++++.    .     .+|+++.
T Consensus        62 ~~~l~kA~Glk~~~~~~VLDaTaGLG~Da~vlA~~---G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~  138 (234)
T PF04445_consen   62 GDPLAKAVGLKPGMRPSVLDATAGLGRDAFVLASL---GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIH  138 (234)
T ss_dssp             GSHHHHHTT-BTTB---EEETT-TTSHHHHHHHHH---T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEE
T ss_pred             ccHHHHHhCCCCCCCCEEEECCCcchHHHHHHHcc---CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEc
Confidence            34677788888875  8999999999999999976   3689999999998888887776642    1     3589999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      +|+..+...              ....||+|.+||-
T Consensus       139 ~d~~~~L~~--------------~~~s~DVVY~DPM  160 (234)
T PF04445_consen  139 GDALEYLRQ--------------PDNSFDVVYFDPM  160 (234)
T ss_dssp             S-CCCHCCC--------------HSS--SEEEE--S
T ss_pred             CCHHHHHhh--------------cCCCCCEEEECCC
Confidence            999876531              1356899999983

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=96.86  E-value=0.0026  Score=68.23  Aligned_cols=90  Identities=16%  Similarity=0.141  Sum_probs=64.6

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCC-------CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRD-------EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~-------~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      .+.+|||.|||.|+....++..+..       .-.++++|+++..+..++.++..++.-.+.+...|........     
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~-----  105 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLN-----  105 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeecccccccccc-----
Confidence            3458999999999999999876531       2578999999999999999998877333555655544321100     


Q ss_pred             CccccCCCCCCCCCceeecCCccccCc
Q 014571          334 EPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                           .....+.||.|+..||-.....
T Consensus       106 -----~~~~~~~fD~IIgNPPy~~~k~  127 (524)
T TIGR02987       106 -----IESYLDLFDIVITNPPYGRLKP  127 (524)
T ss_pred             -----cccccCcccEEEeCCCccccCc
Confidence                 0011357999999999987654

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=96.83  E-value=0.0032  Score=61.60  Aligned_cols=71  Identities=21%  Similarity=0.205  Sum_probs=60.1

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR  326 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~  326 (422)
                      .-++..+++.++..|||+++|+|..|..|++..   ..|+++|+++..++.++++..  .-++++++.+|+.++..
T Consensus        20 ~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~---~~v~~vE~d~~~~~~L~~~~~--~~~~~~vi~~D~l~~~~   90 (262)
T PF00398_consen   20 DKIVDALDLSEGDTVLEIGPGPGALTRELLKRG---KRVIAVEIDPDLAKHLKERFA--SNPNVEVINGDFLKWDL   90 (262)
T ss_dssp             HHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHS---SEEEEEESSHHHHHHHHHHCT--TCSSEEEEES-TTTSCG
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCccchhhHhccc---CcceeecCcHhHHHHHHHHhh--hcccceeeecchhcccc
Confidence            345667788999999999999999999999884   689999999999999998655  35789999999987654

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=96.79  E-value=0.0046  Score=54.36  Aligned_cols=50  Identities=26%  Similarity=0.260  Sum_probs=40.9

Q ss_pred             hHHHHHHhcC-CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHH
Q 014571          249 PSIVTAHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD  301 (422)
Q Consensus       249 ~S~lv~~~L~-p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~  301 (422)
                      .+.++..++. ..++.+|||++||.|..+..++..   ..+++++|+++..++.
T Consensus         9 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~~~g~D~~~~~~~~   59 (161)
T PF13489_consen    9 YADLLERLLPRLKPGKRVLDIGCGTGSFLRALAKR---GFEVTGVDISPQMIEK   59 (161)
T ss_dssp             HHHHHHHHHTCTTTTSEEEEESSTTSHHHHHHHHT---TSEEEEEESSHHHHHH
T ss_pred             HHHHHHHHhcccCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHhh
Confidence            3455555665 578899999999999999999776   2399999999999988

...

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=96.79  E-value=0.0032  Score=59.71  Aligned_cols=95  Identities=16%  Similarity=0.099  Sum_probs=74.5

Q ss_pred             eChhHHHH--HHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEE-EEEcCChHHHHHHHHHHHHhC----------
Q 014571          246 QNLPSIVT--AHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEV-VAVDRSHNKVMDIQKLAAEMG----------  310 (422)
Q Consensus       246 Qd~~S~lv--~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V-~A~D~s~~rl~~l~~~l~r~g----------  310 (422)
                      -++++|.+  ...|+  ++||.++||+++|+|-.|+.++.+++..|.+ +++|..+.-++..++|+++.-          
T Consensus        63 iSAp~mha~~le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~  142 (237)
T KOG1661|consen   63 ISAPHMHATALEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLK  142 (237)
T ss_pred             EcchHHHHHHHHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhc
Confidence            35566643  45677  8999999999999999999999888877775 999999999999999998754          


Q ss_pred             CcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          311 LKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       311 ~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      ..++.++.+|.++...               ..+.||+|-|-|--
T Consensus       143 ~~~l~ivvGDgr~g~~---------------e~a~YDaIhvGAaa  172 (237)
T KOG1661|consen  143 RGELSIVVGDGRKGYA---------------EQAPYDAIHVGAAA  172 (237)
T ss_pred             cCceEEEeCCccccCC---------------ccCCcceEEEccCc
Confidence            1347788889886421               24568999995433

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=96.78  E-value=0.0046  Score=60.77  Aligned_cols=83  Identities=19%  Similarity=0.157  Sum_probs=63.1

Q ss_pred             cceEEEeChh-HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEE
Q 014571          240 EGEIFLQNLP-SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTY  317 (422)
Q Consensus       240 ~G~~~~Qd~~-S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~  317 (422)
                      -|..++-++- -+-.+.-.+.+|++.||+++-|||+-|..|.+.   ..+|+|+|+++.++..+.++.+..-. ...+++
T Consensus        36 ~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~---~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~  112 (315)
T KOG0820|consen   36 FGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEA---GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVL  112 (315)
T ss_pred             cchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHh---cCeEEEEecCcHHHHHHHHHhcCCCccceeeEE
Confidence            3445555521 112334456889999999999999999999987   46899999999999999998766544 348899


Q ss_pred             ecchhhhh
Q 014571          318 KLDALKAV  325 (422)
Q Consensus       318 ~~Da~~~~  325 (422)
                      .+|..+..
T Consensus       113 ~gD~lK~d  120 (315)
T KOG0820|consen  113 HGDFLKTD  120 (315)
T ss_pred             ecccccCC
Confidence            99987653

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.78  E-value=0.0094  Score=59.23  Aligned_cols=85  Identities=24%  Similarity=0.213  Sum_probs=63.8

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcce-EEE
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCI-TTY  317 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv-~~~  317 (422)
                      .-+..+|.+=.+.+..+-.-...-+|||+|||+|..-+-+...... .-.|.-.|.++.-++..++.++..|+.++ ++.
T Consensus       114 ~Rk~~l~~~i~~ai~~L~~~g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~  193 (311)
T PF12147_consen  114 QRKVHLEELIRQAIARLREQGRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFE  193 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEE
Confidence            3333444443333333333345568999999999998887776543 46899999999999999999999999887 999


Q ss_pred             ecchhhh
Q 014571          318 KLDALKA  324 (422)
Q Consensus       318 ~~Da~~~  324 (422)
                      ++|+...
T Consensus       194 ~~dAfd~  200 (311)
T PF12147_consen  194 QGDAFDR  200 (311)
T ss_pred             ecCCCCH
Confidence            9998764

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>TIGR00478 tly hemolysin TlyA family protein

Probab=96.78  E-value=0.0012  Score=63.58  Aligned_cols=44  Identities=25%  Similarity=0.336  Sum_probs=36.8

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHH-HHHH
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD-IQKL  305 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~-l~~~  305 (422)
                      .+|.+|||++||||+.|..+++.  +..+|+|+|.++.++.. ++++
T Consensus        74 ~~~~~vlDiG~gtG~~t~~l~~~--ga~~v~avD~~~~~l~~~l~~~  118 (228)
T TIGR00478        74 VKNKIVLDVGSSTGGFTDCALQK--GAKEVYGVDVGYNQLAEKLRQD  118 (228)
T ss_pred             CCCCEEEEcccCCCHHHHHHHHc--CCCEEEEEeCCHHHHHHHHhcC
Confidence            46889999999999999999986  35789999999987764 4444

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=96.74  E-value=0.0071  Score=57.81  Aligned_cols=64  Identities=20%  Similarity=0.080  Sum_probs=48.2

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHH------------HhCCcceEEEecchhhh
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA------------EMGLKCITTYKLDALKA  324 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~------------r~g~~nv~~~~~Da~~~  324 (422)
                      .+.++.+|||.+||.|.-+..+|+.   .-.|+|+|+|+.-++.+.+...            +....+|++.++|...+
T Consensus        34 ~~~~~~rvL~~gCG~G~da~~LA~~---G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l  109 (218)
T PRK13255         34 ALPAGSRVLVPLCGKSLDMLWLAEQ---GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFAL  109 (218)
T ss_pred             CCCCCCeEEEeCCCChHhHHHHHhC---CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCC
Confidence            4567889999999999999999985   4589999999999997642110            11123577888887765

>TIGR01027 proB glutamate 5-kinase

Probab=96.69  E-value=0.0026  Score=65.35  Aligned_cols=63  Identities=25%  Similarity=0.468  Sum_probs=56.5

Q ss_pred             CCCEEEEccccHHHHHc-CCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571          122 PPKEVIVSRKCAEAVLR-GAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL  200 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlr-GA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v  200 (422)
                      ..-.|+||.+|.+|+.+ |+.++++||+....+|++||.|.|.                                .+.+.
T Consensus       271 ~~G~i~vD~gA~~al~~~g~sLl~~Gi~~v~g~F~~gd~v~i~--------------------------------~~~~~  318 (363)
T TIGR01027       271 PAGEITVDAGAEEALLERGKSLLPAGIVGVEGNFSRGEVVEIL--------------------------------NPEGQ  318 (363)
T ss_pred             cCCeEEEChhHHHHHHhcCCccCCccceeeECcccCCCEEEEE--------------------------------CCCCC
Confidence            45689999999999986 8999999999999999999999999                                34577


Q ss_pred             EEEEccCccCHHHHhc
Q 014571          201 YIGQGTAMMSRAGIFR  216 (422)
Q Consensus       201 ~Vrvg~a~msreel~~  216 (422)
                      .|+.|.+..+.+++.+
T Consensus       319 ~ia~g~~~y~s~~~~~  334 (363)
T TIGR01027       319 DIGRGLVNYSSDELEK  334 (363)
T ss_pred             EEEEEEecCCHHHHHH
Confidence            8999999999998864

Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.

>COG1370 Prefoldin, molecular chaperone implicated in de novo protein folding, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=96.69  E-value=0.005  Score=55.04  Aligned_cols=75  Identities=27%  Similarity=0.395  Sum_probs=67.7

Q ss_pred             CCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571          121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL  200 (422)
Q Consensus       121 ~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v  200 (422)
                      .+.-.|+|.+.+++.+-.|-+||+.=|+.+++++++||+|.|.                                .+...
T Consensus        78 ~P~~RVvV~~E~e~f~r~Gk~VFaKfVi~~D~~iR~~dEvlVV--------------------------------ne~d~  125 (155)
T COG1370          78 FPRMRVVVSDEAEEFVRKGKSVFAKFVIDVDEEIRAGDEVLVV--------------------------------NEDDE  125 (155)
T ss_pred             CCceEEEeccccHHHHHhccchhhhheeccCcccCCCCeEEEE--------------------------------CCCCc
Confidence            3455899999999999999999999999999999999999999                                34678


Q ss_pred             EEEEccCccCHHHHhcccCcceeeccc
Q 014571          201 YIGQGTAMMSRAGIFRASEGIAVDMHN  227 (422)
Q Consensus       201 ~Vrvg~a~msreel~~~~~GiaV~~~~  227 (422)
                      .+++|++.+|..+|..-..|++|+...
T Consensus       126 LlAvGra~ls~~E~~~~~~G~AVkVr~  152 (155)
T COG1370         126 LLAVGRALLSGAEMREFERGMAVKVRE  152 (155)
T ss_pred             EEEeeeEeecHHHHhhccccEEEEEec
Confidence            899999999999999889999998654

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=96.69  E-value=0.0027  Score=62.69  Aligned_cols=76  Identities=14%  Similarity=0.006  Sum_probs=56.9

Q ss_pred             eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCC
Q 014571          264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDN  343 (422)
Q Consensus       264 ~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~  343 (422)
                      +|+|+|||.||-+..+.+. + --.|+|+|+++..++..++|....      ++..|.++.....             ..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~-G-~~~v~a~e~~~~a~~~~~~N~~~~------~~~~Di~~~~~~~-------------~~   60 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKA-G-FEIVAANEIDKSAAETYEANFPNK------LIEGDITKIDEKD-------------FI   60 (275)
T ss_pred             cEEEEccCcchHHHHHHHc-C-CEEEEEEeCCHHHHHHHHHhCCCC------CccCccccCchhh-------------cC
Confidence            6899999999998888765 2 347899999999999999875321      4556766543210             02


Q ss_pred             CCCCceeecCCccccCc
Q 014571          344 NYITSQTSDSMKLHKEV  360 (422)
Q Consensus       344 ~~FD~VLvDaPCSg~G~  360 (422)
                      ..+|.++.++||.+-..
T Consensus        61 ~~~D~l~~gpPCq~fS~   77 (275)
T cd00315          61 PDIDLLTGGFPCQPFSI   77 (275)
T ss_pred             CCCCEEEeCCCChhhhH
Confidence            35899999999998766

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=96.68  E-value=0.008  Score=57.47  Aligned_cols=83  Identities=17%  Similarity=0.200  Sum_probs=68.0

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCC
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSK  341 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~  341 (422)
                      +.+|+|+++|+|-=...+| .+.++.+|+-+|...+|+.-+++..+.+|++|++++++.+..+....             
T Consensus        68 ~~~~~DIGSGaGfPGipLA-I~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~-------------  133 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLA-IAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEK-------------  133 (215)
T ss_pred             CCEEEEeCCCCCCchhhHH-HhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhccccc-------------
Confidence            6899999999999888888 44567789999999999999999999999999999998887653110             


Q ss_pred             CCCCCCceeecCCccccCc
Q 014571          342 DNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       342 ~~~~FD~VLvDaPCSg~G~  360 (422)
                       .. ||.|..=|=++-.-.
T Consensus       134 -~~-~D~vtsRAva~L~~l  150 (215)
T COG0357         134 -KQ-YDVVTSRAVASLNVL  150 (215)
T ss_pred             -cc-CcEEEeehccchHHH
Confidence             11 898888776665544

>TIGR00425 CBF5 rRNA pseudouridine synthase, putative

Probab=96.67  E-value=0.0031  Score=63.78  Aligned_cols=74  Identities=32%  Similarity=0.489  Sum_probs=64.5

Q ss_pred             CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571          122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY  201 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~  201 (422)
                      +.+.|+|+..+++.+++|+.++.||+..++..++.|+.|.++.                                ..+.+
T Consensus       236 ~lP~V~Vd~~~a~~I~NG~~I~~pgv~~~d~~i~~gd~V~V~~--------------------------------~~G~~  283 (322)
T TIGR00425       236 HLKRVVVKDSAVDAICHGADLMVRGIARLEKGIEKGDTVAVIT--------------------------------LKGEA  283 (322)
T ss_pred             hCCceEeCHHHHHHHHCCCccccccccccccccCCCCEEEEEE--------------------------------CCCEE
Confidence            4678899999999999999999999998887778888888872                                24679


Q ss_pred             EEEccCccCHHHHhcccCcceeeccc
Q 014571          202 IGQGTAMMSRAGIFRASEGIAVDMHN  227 (422)
Q Consensus       202 Vrvg~a~msreel~~~~~GiaV~~~~  227 (422)
                      +++|.+.++.+++....+|++|+...
T Consensus       284 LAIGea~~s~~ei~~~~kG~vV~~~~  309 (322)
T TIGR00425       284 VAVGIALMSTKDIANADKGVVADVKR  309 (322)
T ss_pred             EEEEEEecCHHHHhhcCCcEEEEEEE
Confidence            99999999999999988999998764

This family, found in archaea and eukaryotes, includes the only archaeal proteins markedly similar to bacterial TruB, the tRNA pseudouridine 55 synthase. However, among two related yeast proteins, the archaeal set matches yeast YLR175w far better than YNL292w. The first, termed centromere/microtubule binding protein 5 (CBF5), is an apparent rRNA pseudouridine synthase, while the second is the exclusive tRNA pseudouridine 55 synthase for both cytosolic and mitochondrial compartments. It is unclear whether archaeal proteins found by this model modify tRNA, rRNA, or both.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=96.63  E-value=0.0035  Score=60.71  Aligned_cols=138  Identities=15%  Similarity=0.061  Sum_probs=74.5

Q ss_pred             cccceEEEeChhHHHHHHhcCC--CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceE
Q 014571          238 VLEGEIFLQNLPSIVTAHALDP--QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCIT  315 (422)
Q Consensus       238 ~~~G~~~~Qd~~S~lv~~~L~p--~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~  315 (422)
                      +.+|.+...+.-.. ++.+++-  -.|.+||  |-|-..-|...+.+.+...+|+.+|+++.-++-+++.+++.|++ |+
T Consensus        20 ~DQ~~~T~eT~~~R-a~~~~~~gdL~gk~il--~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~-i~   95 (243)
T PF01861_consen   20 LDQGYATPETTLRR-AALMAERGDLEGKRIL--FLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP-IE   95 (243)
T ss_dssp             GT---B-HHHHHHH-HHHHHHTT-STT-EEE--EES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT---EE
T ss_pred             cccccccHHHHHHH-HHHHHhcCcccCCEEE--EEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc-eE
Confidence            45666655443322 2222222  1577887  66778777777666666789999999999999999999999998 99


Q ss_pred             EEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCch-------hhhhhCCCCC--ccccccCcccchhHH
Q 014571          316 TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVP-------SIAAEGLNGD--KSCKEKGRTCGECGM  386 (422)
Q Consensus       316 ~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l-------~~lrr~p~~~--~~w~~~~~~~~~l~~  386 (422)
                      ++.+|.++....             ...++||.++.|||-+-.|.-       +.++ .+...  ..++..........+
T Consensus        96 ~~~~DlR~~LP~-------------~~~~~fD~f~TDPPyT~~G~~LFlsRgi~~Lk-~~g~~gy~~~~~~~~s~~~~~~  161 (243)
T PF01861_consen   96 AVHYDLRDPLPE-------------ELRGKFDVFFTDPPYTPEGLKLFLSRGIEALK-GEGCAGYFGFTHKEASPDKWLE  161 (243)
T ss_dssp             EE---TTS---T-------------TTSS-BSEEEE---SSHHHHHHHHHHHHHTB--STT-EEEEEE-TTT--HHHHHH
T ss_pred             EEEecccccCCH-------------HHhcCCCEEEeCCCCCHHHHHHHHHHHHHHhC-CCCceEEEEEecCcCcHHHHHH
Confidence            999999976421             236789999999999998762       3333 33311  122222211235668


Q ss_pred             HHHHHHH
Q 014571          387 AQEEINA  393 (422)
Q Consensus       387 ~Q~~IL~  393 (422)
                      .|+.|++
T Consensus       162 ~Q~~l~~  168 (243)
T PF01861_consen  162 VQRFLLE  168 (243)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            9999984

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=96.62  E-value=0.0032  Score=61.57  Aligned_cols=46  Identities=26%  Similarity=0.345  Sum_probs=41.1

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHH
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA  306 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l  306 (422)
                      .|-.|.+|||++||.|-.|-+||.+   ...|+|+|.++.+++.+++..
T Consensus        86 k~~~g~~ilDvGCGgGLLSepLArl---ga~V~GID~s~~~V~vA~~h~  131 (282)
T KOG1270|consen   86 KPLLGMKILDVGCGGGLLSEPLARL---GAQVTGIDASDDMVEVANEHK  131 (282)
T ss_pred             cccCCceEEEeccCccccchhhHhh---CCeeEeecccHHHHHHHHHhh
Confidence            3445789999999999999999998   479999999999999999983

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=96.51  E-value=0.0049  Score=59.69  Aligned_cols=48  Identities=19%  Similarity=0.117  Sum_probs=43.0

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM  309 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~  309 (422)
                      .+..+||++|-.|--|.+||...+. -.|+++|+++..++.++++++..
T Consensus        58 ~~~~~LDIGCNsG~lt~~iak~F~~-r~iLGvDID~~LI~~Ark~~r~~  105 (288)
T KOG2899|consen   58 EPKQALDIGCNSGFLTLSIAKDFGP-RRILGVDIDPVLIQRARKEIRFP  105 (288)
T ss_pred             CcceeEeccCCcchhHHHHHHhhcc-ceeeEeeccHHHHHHHHHhcccc
Confidence            4667999999999999999999875 57999999999999999998764

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=96.47  E-value=0.0069  Score=64.68  Aligned_cols=110  Identities=16%  Similarity=0.134  Sum_probs=84.3

Q ss_pred             ceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCC---CcEEEEEcCChHHHHHHHHHHHHhCCc-ceEE
Q 014571          241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD---EGEVVAVDRSHNKVMDIQKLAAEMGLK-CITT  316 (422)
Q Consensus       241 G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~---~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~  316 (422)
                      |.||-=-.-|.+.++++.|++.++|.|-|||+||.-+..+..++.   ...+++.|++.......+-|+--.|+. ++..
T Consensus       166 GEfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i  245 (489)
T COG0286         166 GEFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANI  245 (489)
T ss_pred             CccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCccccc
Confidence            666554446678899999999999999999999999998888753   378999999999999999998888876 3555


Q ss_pred             EecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571          317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       317 ~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      ..+|...-+....          ......||.|+..||=|+.+.
T Consensus       246 ~~~dtl~~~~~~~----------~~~~~~~D~viaNPPf~~~~~  279 (489)
T COG0286         246 RHGDTLSNPKHDD----------KDDKGKFDFVIANPPFSGKGW  279 (489)
T ss_pred             cccccccCCcccc----------cCCccceeEEEeCCCCCcccc
Confidence            5555543221100          113467999999999997766

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=96.47  E-value=0.004  Score=60.19  Aligned_cols=95  Identities=22%  Similarity=0.233  Sum_probs=72.1

Q ss_pred             HHHHHHhc------CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          250 SIVTAHAL------DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       250 S~lv~~~L------~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      |-|++.++      -++||.+||=++||.|.--.|+.+.+++.|.|+|+|.|+.-=+.|-..+++  -+||.++.-|++.
T Consensus       139 SKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkk--RtNiiPIiEDArh  216 (317)
T KOG1596|consen  139 SKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKK--RTNIIPIIEDARH  216 (317)
T ss_pred             HHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhc--cCCceeeeccCCC
Confidence            44555554      378999999999999999999999999999999999998776666666555  3789999999987


Q ss_pred             hhhccCCCCCCccccCCCCCCCCCceeecCCcccc
Q 014571          324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                      +..      +.      ..-...|.|+.|.+-+-.
T Consensus       217 P~K------YR------mlVgmVDvIFaDvaqpdq  239 (317)
T KOG1596|consen  217 PAK------YR------MLVGMVDVIFADVAQPDQ  239 (317)
T ss_pred             chh------ee------eeeeeEEEEeccCCCchh
Confidence            531      11      112346778877766554

>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2

Probab=96.42  E-value=0.0035  Score=64.74  Aligned_cols=79  Identities=25%  Similarity=0.170  Sum_probs=60.4

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc--eEEEecchhhhhhccCCCCCCcccc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC--ITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n--v~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      .+-+|||.-||+|--++..+.-+.+..+|+++|+++..++.+++|++..|++.  +++.+.|+..+..            
T Consensus        49 ~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~------------  116 (377)
T PF02005_consen   49 GPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLY------------  116 (377)
T ss_dssp             S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHC------------
T ss_pred             CCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhh------------
Confidence            45589999999999999999887667899999999999999999999999875  8999999987653            


Q ss_pred             CCCCCCCCCceeecC
Q 014571          339 NSKDNNYITSQTSDS  353 (422)
Q Consensus       339 ~~~~~~~FD~VLvDa  353 (422)
                        .....||.|=+||
T Consensus       117 --~~~~~fD~IDlDP  129 (377)
T PF02005_consen  117 --SRQERFDVIDLDP  129 (377)
T ss_dssp             --HSTT-EEEEEE--
T ss_pred             --hccccCCEEEeCC
Confidence              1246688888887

1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=96.41  E-value=0.017  Score=53.74  Aligned_cols=83  Identities=17%  Similarity=0.161  Sum_probs=67.7

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      -...+-+++++||+|--|+.+++..+++....|.|+++..++.-++.++..+.. +.+++.|...-..            
T Consensus        41 ~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~-~~~V~tdl~~~l~------------  107 (209)
T KOG3191|consen   41 GHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH-IDVVRTDLLSGLR------------  107 (209)
T ss_pred             hcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc-cceeehhHHhhhc------------
Confidence            334778999999999999999999998999999999999999999999888764 7788888654322            


Q ss_pred             CCCCCCCCCceeecCCcccc
Q 014571          339 NSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~  358 (422)
                          .++.|+++..+|---+
T Consensus       108 ----~~~VDvLvfNPPYVpt  123 (209)
T KOG3191|consen  108 ----NESVDVLVFNPPYVPT  123 (209)
T ss_pred             ----cCCccEEEECCCcCcC
Confidence                2556888888876443

>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis]

Probab=96.38  E-value=0.0039  Score=65.50  Aligned_cols=54  Identities=33%  Similarity=0.526  Sum_probs=48.4

Q ss_pred             CccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEEEccCccCHHHHhcccC
Q 014571          140 AQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASE  219 (422)
Q Consensus       140 A~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~~~~~  219 (422)
                      .++|+||+++|+.+|+.||+|.|..                                 .+...++|+|.|+..+|.+.++
T Consensus       462 g~v~a~GV~da~edIrpnDeV~vv~---------------------------------~~~v~gVGrA~msg~eM~~akk  508 (519)
T COG1549         462 GSVFAPGVVDADEDIRPNDEVVVVH---------------------------------GGEVRGVGRAVMSGREMVEAKK  508 (519)
T ss_pred             ccccccccccCCCCCCcCCEEEEEe---------------------------------CCeEEEEeeeecChHHhcccCC
Confidence            4579999999999999999998883                                 3568899999999999999999


Q ss_pred             cceeecc
Q 014571          220 GIAVDMH  226 (422)
Q Consensus       220 GiaV~~~  226 (422)
                      |++|+..
T Consensus       509 GiaV~VR  515 (519)
T COG1549         509 GIAVRVR  515 (519)
T ss_pred             ceEEEEE
Confidence            9999864

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=96.36  E-value=0.0094  Score=52.78  Aligned_cols=61  Identities=25%  Similarity=0.312  Sum_probs=50.2

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhcc---CCCcEEEEEcCChHHHHHHHHHHHHhC--C-cceEEEec
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLL---RDEGEVVAVDRSHNKVMDIQKLAAEMG--L-KCITTYKL  319 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~---~~~g~V~A~D~s~~rl~~l~~~l~r~g--~-~nv~~~~~  319 (422)
                      ..+...|+|+|||-|--+..++.++   ...-+|+++|.++..++.+.++.++.+  . .++.+...
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~   89 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQG   89 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhcc
Confidence            3788999999999999999999943   245799999999999999999999988  3 34444443

>PLN02823 spermine synthase

Probab=96.29  E-value=0.019  Score=58.42  Aligned_cols=78  Identities=14%  Similarity=0.049  Sum_probs=61.8

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC----CcceEEEecchhhhhhccCCCCCCccc
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----LKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g----~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      ..+||-++.|.|+-+..+++.- +..+|+++|+++..++.+++.+...+    -++++++..|++.+...          
T Consensus       104 pk~VLiiGgG~G~~~re~l~~~-~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~----------  172 (336)
T PLN02823        104 PKTVFIMGGGEGSTAREVLRHK-TVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK----------  172 (336)
T ss_pred             CCEEEEECCCchHHHHHHHhCC-CCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh----------
Confidence            4689999999999888777752 34689999999999999998875432    35699999999987632          


Q ss_pred             cCCCCCCCCCceeecCC
Q 014571          338 CNSKDNNYITSQTSDSM  354 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaP  354 (422)
                          ..+.||.|++|++
T Consensus       173 ----~~~~yDvIi~D~~  185 (336)
T PLN02823        173 ----RDEKFDVIIGDLA  185 (336)
T ss_pred             ----CCCCccEEEecCC
Confidence                1356999999973

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=96.12  E-value=0.019  Score=55.12  Aligned_cols=61  Identities=15%  Similarity=0.112  Sum_probs=50.2

Q ss_pred             ceEEEeChhHHHHHHhcCCCC--CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHH
Q 014571          241 GEIFLQNLPSIVTAHALDPQK--GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK  304 (422)
Q Consensus       241 G~~~~Qd~~S~lv~~~L~p~p--g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~  304 (422)
                      -.+++|-.=+.-+..+|+..+  +.-|||++||+|--+..+.+-   .-..+++|+|+.|++.+.+
T Consensus        28 ri~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~---Gh~wiGvDiSpsML~~a~~   90 (270)
T KOG1541|consen   28 RIVLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDS---GHQWIGVDISPSMLEQAVE   90 (270)
T ss_pred             eeeeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccC---CceEEeecCCHHHHHHHHH
Confidence            457889888888888888776  678999999999876655543   3578999999999999986

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=96.03  E-value=0.021  Score=60.43  Aligned_cols=65  Identities=22%  Similarity=0.173  Sum_probs=51.3

Q ss_pred             CCeEEEecCCCChhHHHHHhcc---CCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhh
Q 014571          262 GERILDMCAAPGGKTTAIASLL---RDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVR  326 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~---~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~  326 (422)
                      +..|+|++||+|--+...++..   +...+|+|+|.++..+..+++.+++.|. +.|+++.+|.+.+..
T Consensus       187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~l  255 (448)
T PF05185_consen  187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVEL  255 (448)
T ss_dssp             T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCH
T ss_pred             ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCC
Confidence            5689999999999876665542   3456999999999999999988888888 569999999998643

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=95.87  E-value=0.017  Score=60.80  Aligned_cols=52  Identities=19%  Similarity=0.228  Sum_probs=46.5

Q ss_pred             ccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHH
Q 014571           14 RWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLA   66 (422)
Q Consensus        14 ~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~   66 (422)
                      ++++-+.+++.+.||.+..+.+++++..||. +++||||++++++++++.|..
T Consensus       150 s~P~wl~~~~~~~~g~~~~~~~~~~~~~~~~-~~~Rvn~~~~~~~~~~~~l~~  201 (445)
T PRK14904        150 SHPEWLLERWIARYGEERTEAMLSYNNQAPL-FGFRINRLKTTPEKFLAAPAD  201 (445)
T ss_pred             CCCHHHHHHHHHHhChHHHHHHHHHhCCCCC-ceeEeCCCCCCHHHHHHHHHh
Confidence            5788899999999998889999999999887 588999999999998887764

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.86  E-value=0.011  Score=55.30  Aligned_cols=51  Identities=25%  Similarity=0.327  Sum_probs=41.5

Q ss_pred             EeChhHHHHHHhcC-------CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCC
Q 014571          245 LQNLPSIVTAHALD-------PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS  295 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~-------p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s  295 (422)
                      +||.-|--+-.+++       .+||++|||++||||.-+...-+..+++|.|+++|+-
T Consensus        46 v~NyR~RsAFKLiEindKy~~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll  103 (232)
T KOG4589|consen   46 VQNYRSRSAFKLIEINDKYRFLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL  103 (232)
T ss_pred             HhhhhhhhhhhheeehhhccccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence            45655555555554       3589999999999999999888999999999999974

>PRK04148 hypothetical protein; Provisional

Probab=95.80  E-value=0.042  Score=48.81  Aligned_cols=58  Identities=16%  Similarity=0.230  Sum_probs=42.7

Q ss_pred             hcCCCCCCeEEEecCCCCh-hHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          256 ALDPQKGERILDMCAAPGG-KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGg-KT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      .+....+.+|||+++|.|. .+..+++.   ...|+|+|+++..++.++++    +   +.++..|...
T Consensus        11 ~~~~~~~~kileIG~GfG~~vA~~L~~~---G~~ViaIDi~~~aV~~a~~~----~---~~~v~dDlf~   69 (134)
T PRK04148         11 NYEKGKNKKIVELGIGFYFKVAKKLKES---GFDVIVIDINEKAVEKAKKL----G---LNAFVDDLFN   69 (134)
T ss_pred             hcccccCCEEEEEEecCCHHHHHHHHHC---CCEEEEEECCHHHHHHHHHh----C---CeEEECcCCC
Confidence            3334467899999999996 55566654   36999999999988877664    3   5677777654

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=95.77  E-value=0.012  Score=55.25  Aligned_cols=59  Identities=32%  Similarity=0.320  Sum_probs=48.5

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchh
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL  322 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~  322 (422)
                      .|.+|||+|||+|--+...+..  +..+|++.|+.+.....++-|++..|+ +|.++..|..
T Consensus        79 rgkrVLd~gagsgLvaIAaa~a--GA~~v~a~d~~P~~~~ai~lNa~angv-~i~~~~~d~~  137 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARA--GAAEVVAADIDPWLEQAIRLNAAANGV-SILFTHADLI  137 (218)
T ss_pred             ccceeeecccccChHHHHHHHh--hhHHHHhcCCChHHHHHhhcchhhccc-eeEEeecccc
Confidence            5899999999999766655544  467999999999999999999999885 4777766643

>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=95.68  E-value=0.046  Score=55.93  Aligned_cols=77  Identities=19%  Similarity=0.037  Sum_probs=63.5

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCC
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSK  341 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~  341 (422)
                      ..+|+|.-+|+|--...+|--.+.. +|+++|++++-++.+++|++.....+..++..|+-.+...              
T Consensus        53 ~~~v~DalsatGiRgIRya~E~~~~-~v~lNDisp~Avelik~Nv~~N~~~~~~v~n~DAN~lm~~--------------  117 (380)
T COG1867          53 PKRVLDALSATGIRGIRYAVETGVV-KVVLNDISPKAVELIKENVRLNSGEDAEVINKDANALLHE--------------  117 (380)
T ss_pred             CeEEeecccccchhHhhhhhhcCcc-EEEEccCCHHHHHHHHHHHHhcCcccceeecchHHHHHHh--------------
Confidence            7799999999999999999887654 9999999999999999999998556777777888766532              


Q ss_pred             CCCCCCceeecC
Q 014571          342 DNNYITSQTSDS  353 (422)
Q Consensus       342 ~~~~FD~VLvDa  353 (422)
                      ....||.|=+||
T Consensus       118 ~~~~fd~IDiDP  129 (380)
T COG1867         118 LHRAFDVIDIDP  129 (380)
T ss_pred             cCCCccEEecCC
Confidence            135677777776

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=95.68  E-value=0.043  Score=53.38  Aligned_cols=86  Identities=15%  Similarity=0.126  Sum_probs=64.5

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC----cceEEEecchhhhhhccC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL----KCITTYKLDALKAVRRKN  329 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~----~nv~~~~~Da~~~~~~~~  329 (422)
                      +..+.+ ...+||=++.|.|+.+..+...- +..+|+++|+++.-++.+++-+.....    ++++++..|++.+.... 
T Consensus        70 ~~~~~~-~p~~VLiiGgG~G~~~~ell~~~-~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~-  146 (246)
T PF01564_consen   70 PLLLHP-NPKRVLIIGGGDGGTARELLKHP-PVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET-  146 (246)
T ss_dssp             HHHHSS-ST-EEEEEESTTSHHHHHHTTST-T-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS-
T ss_pred             HhhcCC-CcCceEEEcCCChhhhhhhhhcC-CcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc-
Confidence            333334 57799999999999988887762 346899999999999999988766432    47999999999987532 


Q ss_pred             CCCCCccccCCCCCC-CCCceeecCCc
Q 014571          330 ESNDEPNMCNSKDNN-YITSQTSDSMK  355 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~-~FD~VLvDaPC  355 (422)
                                   .. +||.|++|++=
T Consensus       147 -------------~~~~yDvIi~D~~d  160 (246)
T PF01564_consen  147 -------------QEEKYDVIIVDLTD  160 (246)
T ss_dssp             -------------SST-EEEEEEESSS
T ss_pred             -------------cCCcccEEEEeCCC
Confidence                         23 79999999875

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=95.54  E-value=0.063  Score=51.37  Aligned_cols=103  Identities=11%  Similarity=0.004  Sum_probs=72.3

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      +....+..+..+|+|++.|.|..+..+++.. +..+++.+|. +.-++.+++      .++|+++.+|....        
T Consensus        92 ~~~~~d~~~~~~vvDvGGG~G~~~~~l~~~~-P~l~~~v~Dl-p~v~~~~~~------~~rv~~~~gd~f~~--------  155 (241)
T PF00891_consen   92 LLEAFDFSGFKTVVDVGGGSGHFAIALARAY-PNLRATVFDL-PEVIEQAKE------ADRVEFVPGDFFDP--------  155 (241)
T ss_dssp             HHHHSTTTTSSEEEEET-TTSHHHHHHHHHS-TTSEEEEEE--HHHHCCHHH------TTTEEEEES-TTTC--------
T ss_pred             hhccccccCccEEEeccCcchHHHHHHHHHC-CCCcceeecc-Hhhhhcccc------ccccccccccHHhh--------
Confidence            3455667778899999999999999999885 5679999999 777777776      57799999997621        


Q ss_pred             CCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceec--cEEEe
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQ--KVLVL  406 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~--~~~~~  406 (422)
                               .+. +|.+++                ....+.|.++.         -..||+++.. ++.+  |.|++
T Consensus       156 ---------~P~-~D~~~l----------------~~vLh~~~d~~---------~~~iL~~~~~al~pg~~g~llI  197 (241)
T PF00891_consen  156 ---------LPV-ADVYLL----------------RHVLHDWSDED---------CVKILRNAAAALKPGKDGRLLI  197 (241)
T ss_dssp             ---------CSS-ESEEEE----------------ESSGGGS-HHH---------HHHHHHHHHHHSEECTTEEEEE
T ss_pred             ---------hcc-ccceee----------------ehhhhhcchHH---------HHHHHHHHHHHhCCCCCCeEEE
Confidence                     123 687877                12234566542         3578988854 8987  77766

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=95.36  E-value=0.071  Score=49.14  Aligned_cols=113  Identities=20%  Similarity=0.185  Sum_probs=79.8

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      +...++..|--||+++.|+|-.|-.|.+.+-....++++|.++..+..+.+.     .+.+.++.+|+........    
T Consensus        41 ~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~-----~p~~~ii~gda~~l~~~l~----  111 (194)
T COG3963          41 ASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQL-----YPGVNIINGDAFDLRTTLG----  111 (194)
T ss_pred             HhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHh-----CCCccccccchhhHHHHHh----
Confidence            3455788899999999999999999999987778999999999999988874     3456688899876542111    


Q ss_pred             CccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHh-ccceeccEEEe
Q 014571          334 EPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALV-VGLRIQKVLVL  406 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a-~~lr~~~~~~~  406 (422)
                            ......||.|++-.|--..-+                 .        .-.+||+.+ ..++.+|.+|.
T Consensus       112 ------e~~gq~~D~viS~lPll~~P~-----------------~--------~~iaile~~~~rl~~gg~lvq  154 (194)
T COG3963         112 ------EHKGQFFDSVISGLPLLNFPM-----------------H--------RRIAILESLLYRLPAGGPLVQ  154 (194)
T ss_pred             ------hcCCCeeeeEEeccccccCcH-----------------H--------HHHHHHHHHHHhcCCCCeEEE
Confidence                  122456888887443222211                 0        123666666 34788888876

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=95.25  E-value=0.077  Score=52.84  Aligned_cols=85  Identities=15%  Similarity=0.133  Sum_probs=68.8

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC----CcceEEEecchhhhhhcc
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----LKCITTYKLDALKAVRRK  328 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g----~~nv~~~~~Da~~~~~~~  328 (422)
                      +.....++| .+||=++-|.|+-+-.+.... +-.+++.+|++++-++..++-+....    -+.++++..|+.++....
T Consensus        69 ~~~~ah~~p-k~VLiiGgGdG~tlRevlkh~-~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~  146 (282)
T COG0421          69 VPLLAHPNP-KRVLIIGGGDGGTLREVLKHL-PVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC  146 (282)
T ss_pred             chhhhCCCC-CeEEEECCCccHHHHHHHhcC-CcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence            334445667 699999999999988888874 36799999999999999999887654    356899999999987532


Q ss_pred             CCCCCCccccCCCCCCCCCceeecC
Q 014571          329 NESNDEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLvDa  353 (422)
                                    ...||+|++|.
T Consensus       147 --------------~~~fDvIi~D~  157 (282)
T COG0421         147 --------------EEKFDVIIVDS  157 (282)
T ss_pred             --------------CCcCCEEEEcC
Confidence                          23799999997

>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]

Probab=95.24  E-value=0.014  Score=60.62  Aligned_cols=65  Identities=20%  Similarity=0.166  Sum_probs=57.5

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC--cceEEEecchhhhhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL--KCITTYKLDALKAVR  326 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~--~nv~~~~~Da~~~~~  326 (422)
                      -++|+.|-|+|||-|-.+..++..   ..+|+|+|.++..++.++.|++...+  .+|+++.+||..+..
T Consensus       247 fk~gevv~D~FaGvGPfa~Pa~kK---~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr  313 (495)
T KOG2078|consen  247 FKPGEVVCDVFAGVGPFALPAAKK---GCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLR  313 (495)
T ss_pred             cCCcchhhhhhcCcCccccchhhc---CcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhh
Confidence            468999999999999999888876   37999999999999999999987665  459999999998875

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=95.21  E-value=0.032  Score=55.03  Aligned_cols=75  Identities=9%  Similarity=-0.027  Sum_probs=55.0

Q ss_pred             eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCC
Q 014571          264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDN  343 (422)
Q Consensus       264 ~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~  343 (422)
                      +++|+|||.||.+.-+-+.-  --.|.|+|+++...+..+.|..       .....|.++.....             .+
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag--~~~~~a~e~~~~a~~~y~~N~~-------~~~~~Di~~~~~~~-------------l~   59 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG--FEVVWAVEIDPDACETYKANFP-------EVICGDITEIDPSD-------------LP   59 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT--EEEEEEEESSHHHHHHHHHHHT-------EEEESHGGGCHHHH-------------HH
T ss_pred             cEEEEccCccHHHHHHHhcC--cEEEEEeecCHHHHHhhhhccc-------cccccccccccccc-------------cc
Confidence            79999999999999887762  3479999999999999999865       67778888765431             01


Q ss_pred             CCCCceeecCCccccCc
Q 014571          344 NYITSQTSDSMKLHKEV  360 (422)
Q Consensus       344 ~~FD~VLvDaPCSg~G~  360 (422)
                      ..+|.++.-+||.+-..
T Consensus        60 ~~~D~l~ggpPCQ~fS~   76 (335)
T PF00145_consen   60 KDVDLLIGGPPCQGFSI   76 (335)
T ss_dssp             HT-SEEEEE---TTTST
T ss_pred             ccceEEEeccCCceEec
Confidence            13799999999999766

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]

Probab=95.15  E-value=0.015  Score=62.61  Aligned_cols=39  Identities=31%  Similarity=0.434  Sum_probs=35.0

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChH
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN  297 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~  297 (422)
                      ++++..|||+||||||-.-..++.|+-.+.|+++|+-+=
T Consensus        42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~pi   80 (780)
T KOG1098|consen   42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVPI   80 (780)
T ss_pred             ccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeeec
Confidence            468899999999999999888899998999999998764

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=95.06  E-value=0.05  Score=49.97  Aligned_cols=62  Identities=23%  Similarity=0.213  Sum_probs=42.1

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC---CcceEEEecchh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG---LKCITTYKLDAL  322 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g---~~nv~~~~~Da~  322 (422)
                      ..+|.+||+++||.|--++.+|.+. +..+|++-|.++ -++.++.|+++.+   -.++.+...|-.
T Consensus        43 ~~~~~~VLELGaG~Gl~gi~~a~~~-~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg  107 (173)
T PF10294_consen   43 LFRGKRVLELGAGTGLPGIAAAKLF-GAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWG  107 (173)
T ss_dssp             GTTTSEEEETT-TTSHHHHHHHHT--T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TT
T ss_pred             hcCCceEEEECCccchhHHHHHhcc-CCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEec
Confidence            3468899999999998887777773 457999999998 9999999999876   345777776653

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=94.93  E-value=0.18  Score=50.68  Aligned_cols=60  Identities=18%  Similarity=0.200  Sum_probs=44.3

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK  312 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~  312 (422)
                      ..+...+.+-.|.+|||++|+.|-.+..|+..  +...|+|+|.+..-+...+-.-+-+|..
T Consensus       105 ~rl~p~l~~L~gk~VLDIGC~nGY~~frM~~~--GA~~ViGiDP~~lf~~QF~~i~~~lg~~  164 (315)
T PF08003_consen  105 DRLLPHLPDLKGKRVLDIGCNNGYYSFRMLGR--GAKSVIGIDPSPLFYLQFEAIKHFLGQD  164 (315)
T ss_pred             HHHHhhhCCcCCCEEEEecCCCcHHHHHHhhc--CCCEEEEECCChHHHHHHHHHHHHhCCC
Confidence            44555555668999999999999999999887  3468999999988765544433334443

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=94.82  E-value=0.14  Score=51.81  Aligned_cols=72  Identities=19%  Similarity=0.280  Sum_probs=52.7

Q ss_pred             hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC--c----ceEEEecchh
Q 014571          249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL--K----CITTYKLDAL  322 (422)
Q Consensus       249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~--~----nv~~~~~Da~  322 (422)
                      -|||+-...  ++++.++||+||-||-.+-.-..  +-+..+++|+..--++.++++.+...-  .    .+.++.+|.+
T Consensus       107 Ks~LI~~y~--~~~~~~~~LgCGKGGDLlKw~kA--gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~  182 (389)
T KOG1975|consen  107 KSVLINLYT--KRGDDVLDLGCGKGGDLLKWDKA--GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCF  182 (389)
T ss_pred             HHHHHHHHh--ccccccceeccCCcccHhHhhhh--cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccc
Confidence            466665554  67999999999999977665433  357899999999999998887765421  1    2567777776


Q ss_pred             hh
Q 014571          323 KA  324 (422)
Q Consensus       323 ~~  324 (422)
                      +-
T Consensus       183 ~~  184 (389)
T KOG1975|consen  183 KE  184 (389)
T ss_pred             hh
Confidence            54

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=94.82  E-value=0.092  Score=50.63  Aligned_cols=65  Identities=12%  Similarity=-0.000  Sum_probs=50.4

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHH------------HHhCCcceEEEecchhhhh
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA------------AEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l------------~r~g~~nv~~~~~Da~~~~  325 (422)
                      .+.+|.+||+..||.|--...||++   .-.|+|+|+|+.-++...+..            ++....+|+++++|...+.
T Consensus        40 ~~~~~~rvLvPgCGkg~D~~~LA~~---G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~  116 (226)
T PRK13256         40 NINDSSVCLIPMCGCSIDMLFFLSK---GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLP  116 (226)
T ss_pred             CCCCCCeEEEeCCCChHHHHHHHhC---CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCC
Confidence            3446789999999999999999997   357999999999999876521            1122246899999987653

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=94.25  E-value=0.068  Score=54.12  Aligned_cols=65  Identities=9%  Similarity=0.021  Sum_probs=51.6

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCC---CcEEEEEcCChHHHHHHHHHHHHhCCcce--EEEecchhhh
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRD---EGEVVAVDRSHNKVMDIQKLAAEMGLKCI--TTYKLDALKA  324 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~---~g~V~A~D~s~~rl~~l~~~l~r~g~~nv--~~~~~Da~~~  324 (422)
                      .++..++|++||.|.||.++.+.+..   ...-+++|+|...++.+.+++..-.++.+  ..+++|-...
T Consensus        75 ~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~  144 (319)
T TIGR03439        75 PSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDG  144 (319)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHH
Confidence            46779999999999999999887743   35689999999999999999984445554  4477776654

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=94.13  E-value=0.12  Score=49.10  Aligned_cols=71  Identities=13%  Similarity=0.031  Sum_probs=46.4

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHH-------HHhCC--cceEEEecchhhh
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA-------AEMGL--KCITTYKLDALKA  324 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l-------~r~g~--~nv~~~~~Da~~~  324 (422)
                      ...+++.+++.++|++||.|.-.++.|... +-.+.+++|+.+...+.+++..       +.+|.  ..+.+..+|..+.
T Consensus        35 l~~~~l~~~dvF~DlGSG~G~~v~~aal~~-~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~  113 (205)
T PF08123_consen   35 LDELNLTPDDVFYDLGSGVGNVVFQAALQT-GCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDP  113 (205)
T ss_dssp             HHHTT--TT-EEEEES-TTSHHHHHHHHHH---SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTH
T ss_pred             HHHhCCCCCCEEEECCCCCCHHHHHHHHHc-CCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcccc
Confidence            356789999999999999999888887654 3457999999999886655433       33454  3577888887654


Q ss_pred             h
Q 014571          325 V  325 (422)
Q Consensus       325 ~  325 (422)
                      .
T Consensus       114 ~  114 (205)
T PF08123_consen  114 D  114 (205)
T ss_dssp             H
T ss_pred             H
Confidence            3

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG1568 Predicted methyltransferases [General function prediction only]

Probab=94.09  E-value=0.099  Score=51.75  Aligned_cols=84  Identities=18%  Similarity=0.205  Sum_probs=63.4

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCC
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSK  341 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~  341 (422)
                      |..|+=|+  --..|...+.+.+-.-+|..+|+++.-++.+.+-++.+|++||+++.+|.+++...             .
T Consensus       153 gK~I~vvG--DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe-------------~  217 (354)
T COG1568         153 GKEIFVVG--DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPE-------------D  217 (354)
T ss_pred             CCeEEEEc--CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChH-------------H
Confidence            55566554  33344444444433458999999999999999999999999999999999986532             2


Q ss_pred             CCCCCCceeecCCccccCc
Q 014571          342 DNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       342 ~~~~FD~VLvDaPCSg~G~  360 (422)
                      ..++||..+-|||-+-.|.
T Consensus       218 ~~~kFDvfiTDPpeTi~al  236 (354)
T COG1568         218 LKRKFDVFITDPPETIKAL  236 (354)
T ss_pred             HHhhCCeeecCchhhHHHH
Confidence            3678999999999886644

>PRK13402 gamma-glutamyl kinase; Provisional

Probab=93.96  E-value=0.11  Score=53.72  Aligned_cols=63  Identities=19%  Similarity=0.269  Sum_probs=55.2

Q ss_pred             CCCEEEEccccHHHHH-cCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571          122 PPKEVIVSRKCAEAVL-RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL  200 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVl-rGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v  200 (422)
                      ..-.++||.+|.+|+. +|+.+.+.||++....|++||.|.+.                                .+.+.
T Consensus       275 ~~G~i~vd~ga~~al~~~~~sLl~~gi~~v~g~F~~gd~v~i~--------------------------------~~~g~  322 (368)
T PRK13402        275 PQGEIVVENDFDRALDNHSEQLTSDDVVEIKGDFSVGDTILVR--------------------------------KGDGT  322 (368)
T ss_pred             CCeeEEECccHHHHHHhcCCcccccceEEEeCEecCCCEEEEE--------------------------------CCCCC
Confidence            4458999999999997 58999999999999999999999999                                33567


Q ss_pred             EEEEccCccCHHHHhc
Q 014571          201 YIGQGTAMMSRAGIFR  216 (422)
Q Consensus       201 ~Vrvg~a~msreel~~  216 (422)
                      .|+-|....+.+|+.+
T Consensus       323 ~~~rg~~~y~s~~~~~  338 (368)
T PRK13402        323 KLAKGKSNYSSCLLNF  338 (368)
T ss_pred             EEEEEEccCCHHHHHH
Confidence            8899999999988864

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=93.96  E-value=0.021  Score=47.47  Aligned_cols=81  Identities=22%  Similarity=0.188  Sum_probs=28.5

Q ss_pred             EEecCCCChhHHHHHhccCCCc--EEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571          266 LDMCAAPGGKTTAIASLLRDEG--EVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCNSKD  342 (422)
Q Consensus       266 LD~CAgpGgKT~~la~l~~~~g--~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~  342 (422)
                      |+++++.|.-|..+++.+.+.+  +++++|..+. .+..++.+++.++ .+++++.+|+........             
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~-------------   66 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP-------------   66 (106)
T ss_dssp             --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH-------------
T ss_pred             CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC-------------
Confidence            5678889999999999886654  8999999996 4455556666666 469999999977643321             


Q ss_pred             CCCCCceeecCCccccCc
Q 014571          343 NNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       343 ~~~FD~VLvDaPCSg~G~  360 (422)
                      ...||.+++|++=+..++
T Consensus        67 ~~~~dli~iDg~H~~~~~   84 (106)
T PF13578_consen   67 DGPIDLIFIDGDHSYEAV   84 (106)
T ss_dssp             H--EEEEEEES---HHHH
T ss_pred             CCCEEEEEECCCCCHHHH
Confidence            256899999975444333

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=93.91  E-value=0.21  Score=47.65  Aligned_cols=80  Identities=13%  Similarity=0.037  Sum_probs=57.3

Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceE-EEecchhhhhhccCCCCCC
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCIT-TYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~-~~~~Da~~~~~~~~~~~~~  334 (422)
                      ++....-..||+++||||.---. .. +.+...|+++|.++++-+.+.+.++.....++. ++.+|+...+.-       
T Consensus        71 ~~gk~~K~~vLEvgcGtG~Nfkf-y~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l-------  141 (252)
T KOG4300|consen   71 FLGKSGKGDVLEVGCGTGANFKF-YP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQL-------  141 (252)
T ss_pred             HhcccCccceEEecccCCCCccc-cc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCccc-------
Confidence            33333334689999999975322 22 124579999999999999999999887666776 889998876522       


Q ss_pred             ccccCCCCCCCCCceee
Q 014571          335 PNMCNSKDNNYITSQTS  351 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLv  351 (422)
                             ..+++|.|++
T Consensus       142 -------~d~s~DtVV~  151 (252)
T KOG4300|consen  142 -------ADGSYDTVVC  151 (252)
T ss_pred             -------ccCCeeeEEE
Confidence                   1456787765

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=93.72  E-value=0.088  Score=52.29  Aligned_cols=48  Identities=31%  Similarity=0.353  Sum_probs=34.4

Q ss_pred             HHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccccccCCCCCcEEEE
Q 014571           35 ISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFV  105 (422)
Q Consensus        35 ~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  105 (422)
                      |+++.-.+| -+++||||+|++++++++.|.++         |             +....++..++.+.+
T Consensus         1 il~~~n~~~-~~~iRvN~~k~~~~~~~~~L~~~---------g-------------~~~~~~~~~~~~~~~   48 (283)
T PF01189_consen    1 ILEANNCPP-PVTIRVNTLKISREELLEELEEE---------G-------------IQLEPIPRSPDALRV   48 (283)
T ss_dssp             HHHHCTS---GEEEEE-TTTSSHHHHHHHHHHT---------T-------------HEEEEETSTTCEEEE
T ss_pred             CccccCCCC-CeEEEECcCcCCHHHHHHHHhhc---------c-------------cceEEcccccchhcc
Confidence            455665555 46899999999999999999866         4             555667788888444

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=93.34  E-value=0.14  Score=50.27  Aligned_cols=61  Identities=26%  Similarity=0.288  Sum_probs=44.6

Q ss_pred             ccceEEEeChhHHHHHHhcCCC--------CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHH
Q 014571          239 LEGEIFLQNLPSIVTAHALDPQ--------KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK  304 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~p~--------pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~  304 (422)
                      ..|..++-+.. | ...+|...        ...++||++||-|+-|.+++.+.   .+|+|.|.|+.|..++++
T Consensus        66 gRG~MFvfS~~-Q-~~~LL~~~~~~~~~~~~~~~lLDlGAGdG~VT~~l~~~f---~~v~aTE~S~~Mr~rL~~  134 (265)
T PF05219_consen   66 GRGSMFVFSEE-Q-FRKLLRISGFSWNPDWKDKSLLDLGAGDGEVTERLAPLF---KEVYATEASPPMRWRLSK  134 (265)
T ss_pred             cCCcEEEecHH-H-HHHHhhhhccCCCCcccCCceEEecCCCcHHHHHHHhhc---ceEEeecCCHHHHHHHHh
Confidence            46666665532 3 34444433        46789999999999999999986   469999999988655554

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=93.28  E-value=0.13  Score=49.21  Aligned_cols=66  Identities=23%  Similarity=0.135  Sum_probs=49.1

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH------------hCCcceEEEecchhhh
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE------------MGLKCITTYKLDALKA  324 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r------------~g~~nv~~~~~Da~~~  324 (422)
                      +..+++.+||+-.||.|--...+|+.   .-.|+|+|+|+.-++.+.+....            ....+|+++++|...+
T Consensus        33 l~~~~~~rvLvPgCG~g~D~~~La~~---G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l  109 (218)
T PF05724_consen   33 LALKPGGRVLVPGCGKGYDMLWLAEQ---GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL  109 (218)
T ss_dssp             HTTSTSEEEEETTTTTSCHHHHHHHT---TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred             cCCCCCCeEEEeCCCChHHHHHHHHC---CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence            34678899999999999999999986   36999999999999987432221            1123578899998775


Q ss_pred             h
Q 014571          325 V  325 (422)
Q Consensus       325 ~  325 (422)
                      .
T Consensus       110 ~  110 (218)
T PF05724_consen  110 P  110 (218)
T ss_dssp             G
T ss_pred             C
Confidence            4

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>TIGR00497 hsdM type I restriction system adenine methylase (hsdM)

Probab=92.88  E-value=0.48  Score=50.76  Aligned_cols=106  Identities=13%  Similarity=0.062  Sum_probs=69.3

Q ss_pred             cceEEEeChhHHHHHHhcCCC--CCCeEEEecCCCChhHHHHHhccC---CCcEEEEEcCChHHHHHHHHHHHHhCCc--
Q 014571          240 EGEIFLQNLPSIVTAHALDPQ--KGERILDMCAAPGGKTTAIASLLR---DEGEVVAVDRSHNKVMDIQKLAAEMGLK--  312 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~--pg~~VLD~CAgpGgKT~~la~l~~---~~g~V~A~D~s~~rl~~l~~~l~r~g~~--  312 (422)
                      .|.++.-..-+.+.+..+++.  |+..|.|+|||+||.-......+.   ..-.+++.+.........+.|+.-.|..  
T Consensus       194 ~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~  273 (501)
T TIGR00497       194 GGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYA  273 (501)
T ss_pred             CceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCcc
Confidence            556665444455666777765  788999999999998765444332   1246899999999998888887655542  


Q ss_pred             ceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcccc
Q 014571          313 CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       313 nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                      ......+|....+       +.      .....||.|+.++|=+..
T Consensus       274 t~~~~~~dtl~~~-------d~------~~~~~~D~v~~NpPf~~~  306 (501)
T TIGR00497       274 NFNIINADTLTTK-------EW------ENENGFEVVVSNPPYSIS  306 (501)
T ss_pred             ccCcccCCcCCCc-------cc------cccccCCEEeecCCcccc
Confidence            2233334432211       10      113459999999998763

Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).

>TIGR00675 dcm DNA-methyltransferase (dcm)

Probab=92.71  E-value=0.24  Score=49.83  Aligned_cols=74  Identities=11%  Similarity=-0.088  Sum_probs=54.3

Q ss_pred             EEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCC
Q 014571          265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNN  344 (422)
Q Consensus       265 VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~  344 (422)
                      |+|++||.||.+.-+-+. + --.+.|+|+++..++..+.|..     + .++..|.++.....              ..
T Consensus         1 vidLF~G~GG~~~Gl~~a-G-~~~~~a~e~~~~a~~ty~~N~~-----~-~~~~~Di~~~~~~~--------------~~   58 (315)
T TIGR00675         1 FIDLFAGIGGIRLGFEQA-G-FKCVFASEIDKYAQKTYEANFG-----N-KVPFGDITKISPSD--------------IP   58 (315)
T ss_pred             CEEEecCccHHHHHHHHc-C-CeEEEEEeCCHHHHHHHHHhCC-----C-CCCccChhhhhhhh--------------CC
Confidence            689999999999888765 2 2356789999999999988742     2 34456776653211              12


Q ss_pred             CCCceeecCCccccCc
Q 014571          345 YITSQTSDSMKLHKEV  360 (422)
Q Consensus       345 ~FD~VLvDaPCSg~G~  360 (422)
                      .+|.++.-+||.+--.
T Consensus        59 ~~dvl~gg~PCq~fS~   74 (315)
T TIGR00675        59 DFDILLGGFPCQPFSI   74 (315)
T ss_pred             CcCEEEecCCCcccch
Confidence            3799999999999765

All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=92.67  E-value=0.5  Score=44.86  Aligned_cols=60  Identities=18%  Similarity=0.180  Sum_probs=49.2

Q ss_pred             EEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhh
Q 014571          265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAV  325 (422)
Q Consensus       265 VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~  325 (422)
                      |.|+||==|--...+.+. +...+++|+|+++.=++.+++++++.|+. .|++..+|+....
T Consensus         1 vaDIGtDHgyLpi~L~~~-~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l   61 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKN-GKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVL   61 (205)
T ss_dssp             EEEET-STTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG-
T ss_pred             CceeccchhHHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCccccc
Confidence            689999999999988886 33458999999999999999999999975 4999999998754

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=92.60  E-value=0.2  Score=46.41  Aligned_cols=43  Identities=21%  Similarity=0.256  Sum_probs=31.1

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHH
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK  304 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~  304 (422)
                      -.+|+.|||-+||.|. |.+.|..++  -+-+++|+++.-++.+++
T Consensus       189 t~~gdiVlDpF~GSGT-T~~aa~~l~--R~~ig~E~~~~y~~~a~~  231 (231)
T PF01555_consen  189 TNPGDIVLDPFAGSGT-TAVAAEELG--RRYIGIEIDEEYCEIAKK  231 (231)
T ss_dssp             S-TT-EEEETT-TTTH-HHHHHHHTT---EEEEEESSHHHHHHHHH
T ss_pred             hccceeeehhhhccCh-HHHHHHHcC--CeEEEEeCCHHHHHHhcC
Confidence            4689999999999996 555555553  469999999998887764

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK11524 putative methyltransferase; Provisional

Probab=92.60  E-value=0.23  Score=49.16  Aligned_cols=46  Identities=15%  Similarity=0.105  Sum_probs=37.3

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE  308 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r  308 (422)
                      .+|+.|||-++|.|. |...|..++  -+-+++|+++.-++.++++++.
T Consensus       207 ~~GD~VLDPF~GSGT-T~~AA~~lg--R~~IG~Ei~~~Y~~~a~~Rl~~  252 (284)
T PRK11524        207 NPGDIVLDPFAGSFT-TGAVAKASG--RKFIGIEINSEYIKMGLRRLDV  252 (284)
T ss_pred             CCCCEEEECCCCCcH-HHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHh
Confidence            689999999999995 444455543  4789999999999999998764

>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=92.39  E-value=0.077  Score=56.14  Aligned_cols=85  Identities=22%  Similarity=0.211  Sum_probs=70.3

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCcc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      +-.++-+|||.-+|+|--++..|..+.+-+.|+|+|.+++-++.+++|.+..+..+ ++....|+....-.         
T Consensus       106 ~~~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~---------  176 (525)
T KOG1253|consen  106 REEKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYE---------  176 (525)
T ss_pred             hccCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHh---------
Confidence            34567899999999999999999999999999999999999999999999988755 77888898765432         


Q ss_pred             ccCCCCCCCCCceeecC
Q 014571          337 MCNSKDNNYITSQTSDS  353 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDa  353 (422)
                        +......||+|=+||
T Consensus       177 --~~~~~~~FDvIDLDP  191 (525)
T KOG1253|consen  177 --HPMVAKFFDVIDLDP  191 (525)
T ss_pred             --ccccccccceEecCC
Confidence              112246788888887

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=92.19  E-value=0.19  Score=48.79  Aligned_cols=78  Identities=17%  Similarity=0.135  Sum_probs=51.5

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHH-HHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMD-IQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~-l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      +|..+||++|.+||+|--+.+.  +..+|+|+|....-+.- +++     ...-+.....|++.+...            
T Consensus        79 k~kv~LDiGsSTGGFTd~lLq~--gAk~VyavDVG~~Ql~~kLR~-----d~rV~~~E~tN~r~l~~~------------  139 (245)
T COG1189          79 KGKVVLDIGSSTGGFTDVLLQR--GAKHVYAVDVGYGQLHWKLRN-----DPRVIVLERTNVRYLTPE------------  139 (245)
T ss_pred             CCCEEEEecCCCccHHHHHHHc--CCcEEEEEEccCCccCHhHhc-----CCcEEEEecCChhhCCHH------------
Confidence            6889999999999999999887  45799999998764432 222     111233334455544221            


Q ss_pred             CCCCCCCCceeecCCcccc
Q 014571          340 SKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~  358 (422)
                       +..+..|.+.+|..=.+.
T Consensus       140 -~~~~~~d~~v~DvSFISL  157 (245)
T COG1189         140 -DFTEKPDLIVIDVSFISL  157 (245)
T ss_pred             -HcccCCCeEEEEeehhhH
Confidence             123356889999876654

>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.08  E-value=0.13  Score=49.68  Aligned_cols=52  Identities=29%  Similarity=0.481  Sum_probs=38.7

Q ss_pred             CeEEEecCCCChhHHHHHhccCC----Cc----EEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          263 ERILDMCAAPGGKTTAIASLLRD----EG----EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~----~g----~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      .+|+|+|||||.-+-.+++.+..    .+    +|+|+|+-+           -.-++.|..+++|.++..
T Consensus        43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~-----------MaPI~GV~qlq~DIT~~s  102 (294)
T KOG1099|consen   43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQP-----------MAPIEGVIQLQGDITSAS  102 (294)
T ss_pred             hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEeccc-----------CCccCceEEeecccCCHh
Confidence            58999999999999999876633    22    399999863           123456788888887653

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=92.01  E-value=0.44  Score=47.81  Aligned_cols=86  Identities=13%  Similarity=0.014  Sum_probs=50.3

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh-CCc-ceEEEecchhhhhhccCCCCCCccccC
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-GLK-CITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~-g~~-nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .-++||++.|.-..-..|+..+. .-+.+|.|+++.-++.+++|+++. ++. .|+++............          
T Consensus       103 ~v~glDIGTGAscIYpLLg~~~~-~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i----------  171 (299)
T PF05971_consen  103 KVRGLDIGTGASCIYPLLGAKLY-GWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGI----------  171 (299)
T ss_dssp             --EEEEES-TTTTHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTS----------
T ss_pred             ceEeecCCccHHHHHHHHhhhhc-CCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhh----------
Confidence            45899999998887666665553 579999999999999999999998 774 48777653322111100          


Q ss_pred             CCCCCCCCceeecCCcccc
Q 014571          340 SKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~  358 (422)
                      ....+.||..+|.||==.+
T Consensus       172 ~~~~e~~dftmCNPPFy~s  190 (299)
T PF05971_consen  172 IQPNERFDFTMCNPPFYSS  190 (299)
T ss_dssp             TT--S-EEEEEE-----SS
T ss_pred             hcccceeeEEecCCccccC
Confidence            0123579999999996544

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=91.84  E-value=0.64  Score=44.18  Aligned_cols=84  Identities=18%  Similarity=0.170  Sum_probs=61.6

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcce-EEEecchhhhhhccCCCCCCcccc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI-TTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv-~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      ..+.+||+++||+|-.+.++|+.+. .-.-.--|.+......++..+...|++|+ ..+..|.+.........       
T Consensus        24 ~~~~~vLEiaSGtGqHa~~FA~~lP-~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~-------   95 (204)
T PF06080_consen   24 DSGTRVLEIASGTGQHAVYFAQALP-HLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELP-------   95 (204)
T ss_pred             ccCceEEEEcCCccHHHHHHHHHCC-CCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccc-------
Confidence            3444799999999999999999985 46777889999999999999999999885 45667776543221100       


Q ss_pred             CCCCCCCCCceee
Q 014571          339 NSKDNNYITSQTS  351 (422)
Q Consensus       339 ~~~~~~~FD~VLv  351 (422)
                      .......||.|++
T Consensus        96 ~~~~~~~~D~i~~  108 (204)
T PF06080_consen   96 APLSPESFDAIFC  108 (204)
T ss_pred             cccCCCCcceeee
Confidence            0012456888875

The function of this family is unknown.

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=91.76  E-value=0.49  Score=45.39  Aligned_cols=63  Identities=22%  Similarity=0.164  Sum_probs=44.2

Q ss_pred             EeChhHHHHHHhcCCC---CCCeEEEecCCCChhHHHHHhccCCC-cEEEEEcCChHHHHHHHHHHH
Q 014571          245 LQNLPSIVTAHALDPQ---KGERILDMCAAPGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAA  307 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p~---pg~~VLD~CAgpGgKT~~la~l~~~~-g~V~A~D~s~~rl~~l~~~l~  307 (422)
                      +=-++|-+.-+.+...   .+-+++|-|||.|...+.++-+-++. ..|+|-|+++..++.+++|+.
T Consensus        32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~   98 (246)
T PF11599_consen   32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLS   98 (246)
T ss_dssp             -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhh
Confidence            3345666666665544   34589999999999998887664332 589999999999988887764

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=91.75  E-value=0.53  Score=47.90  Aligned_cols=59  Identities=25%  Similarity=0.171  Sum_probs=46.2

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchh
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDAL  322 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~  322 (422)
                      .|..|||++||.|-.++..|+.  +..+|+|+|-| .|.+-+++..+...+ +.|.++.+-..
T Consensus       177 ~~kiVlDVGaGSGILS~FAaqA--GA~~vYAvEAS-~MAqyA~~Lv~~N~~~~rItVI~GKiE  236 (517)
T KOG1500|consen  177 QDKIVLDVGAGSGILSFFAAQA--GAKKVYAVEAS-EMAQYARKLVASNNLADRITVIPGKIE  236 (517)
T ss_pred             CCcEEEEecCCccHHHHHHHHh--CcceEEEEehh-HHHHHHHHHHhcCCccceEEEccCccc
Confidence            5788999999999998888776  45799999988 678888877776554 45777766543

>KOG1227 consensus Putative methyltransferase [General function prediction only]

Probab=91.44  E-value=0.09  Score=52.54  Aligned_cols=63  Identities=19%  Similarity=0.110  Sum_probs=49.3

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhh
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA  324 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~  324 (422)
                      .|+.|.||.||-|-+|+...-.. +...|+|+|.++.-++.++++++..++.. ..++.+|.+..
T Consensus       194 ~~eviVDLYAGIGYFTlpflV~a-gAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~  257 (351)
T KOG1227|consen  194 DGEVIVDLYAGIGYFTLPFLVTA-GAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNP  257 (351)
T ss_pred             ccchhhhhhcccceEEeehhhcc-CccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhcccccc
Confidence            46999999999999999443332 35699999999999999999999877532 45566676653

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=91.07  E-value=0.32  Score=47.33  Aligned_cols=53  Identities=23%  Similarity=0.219  Sum_probs=40.1

Q ss_pred             hHHHHHHhcCCCCCC-eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHH
Q 014571          249 PSIVTAHALDPQKGE-RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQK  304 (422)
Q Consensus       249 ~S~lv~~~L~p~pg~-~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~  304 (422)
                      ++-+.-......+++ ..+|++||+|--+..+|+..   -+|+|.|+|+.+++.+++
T Consensus        20 Ptdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~---k~VIatD~s~~mL~~a~k   73 (261)
T KOG3010|consen   20 PTDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHY---KEVIATDVSEAMLKVAKK   73 (261)
T ss_pred             cHHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhh---hhheeecCCHHHHHHhhc
Confidence            355555666666777 79999999995455556663   479999999999997765

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=90.36  E-value=0.76  Score=46.85  Aligned_cols=63  Identities=24%  Similarity=0.175  Sum_probs=51.6

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA  324 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~  324 (422)
                      .-.|..|||++||+|-.+.-.|+.  +..+|+|+|-| ..++.+++.++..|+.+ |+++++.....
T Consensus        58 lf~dK~VlDVGcGtGILS~F~akA--GA~~V~aVe~S-~ia~~a~~iv~~N~~~~ii~vi~gkvEdi  121 (346)
T KOG1499|consen   58 LFKDKTVLDVGCGTGILSMFAAKA--GARKVYAVEAS-SIADFARKIVKDNGLEDVITVIKGKVEDI  121 (346)
T ss_pred             hcCCCEEEEcCCCccHHHHHHHHh--CcceEEEEech-HHHHHHHHHHHhcCccceEEEeecceEEE
Confidence            347889999999999988877776  36799999998 55689999999999977 78888766554

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=90.29  E-value=0.47  Score=46.91  Aligned_cols=49  Identities=22%  Similarity=0.237  Sum_probs=40.5

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM  309 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~  309 (422)
                      ...+|||++||||.-+..+.+..+...+++++|.|+.+++..+..++..
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~   81 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAG   81 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcc
Confidence            3468999999999877777777766678999999999999888876654

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>PHA01634 hypothetical protein

Probab=89.67  E-value=0.87  Score=40.35  Aligned_cols=48  Identities=13%  Similarity=0.023  Sum_probs=40.6

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG  310 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g  310 (422)
                      .|.+|+|++|+-|.-++.++-.  +..+|+|+|.+++..+.++++++-..
T Consensus        28 k~KtV~dIGA~iGdSaiYF~l~--GAK~Vva~E~~~kl~k~~een~k~nn   75 (156)
T PHA01634         28 YQRTIQIVGADCGSSALYFLLR--GASFVVQYEKEEKLRKKWEEVCAYFN   75 (156)
T ss_pred             cCCEEEEecCCccchhhHHhhc--CccEEEEeccCHHHHHHHHHHhhhhe
Confidence            4789999999999877766543  56799999999999999999888763

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=89.54  E-value=0.27  Score=47.59  Aligned_cols=46  Identities=22%  Similarity=0.255  Sum_probs=37.4

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL  305 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~  305 (422)
                      +++.+-.++||++||+|-..-.|-.+.   .++.++|+|.+|++++.++
T Consensus       121 ~~~g~F~~~lDLGCGTGL~G~~lR~~a---~~ltGvDiS~nMl~kA~eK  166 (287)
T COG4976         121 ADLGPFRRMLDLGCGTGLTGEALRDMA---DRLTGVDISENMLAKAHEK  166 (287)
T ss_pred             ccCCccceeeecccCcCcccHhHHHHH---hhccCCchhHHHHHHHHhc
Confidence            344556899999999998887777663   5799999999999988763

>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]

Probab=89.34  E-value=1.7  Score=43.93  Aligned_cols=78  Identities=10%  Similarity=-0.046  Sum_probs=57.2

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD  342 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~  342 (422)
                      -+++|+|||-||...-+.+.-  --.+.|+|+++..++..+.|...     -.+...|........             .
T Consensus         4 ~~~idLFsG~GG~~lGf~~ag--f~~~~a~Eid~~a~~ty~~n~~~-----~~~~~~di~~~~~~~-------------~   63 (328)
T COG0270           4 MKVIDLFAGIGGLSLGFEEAG--FEIVFANEIDPPAVATYKANFPH-----GDIILGDIKELDGEA-------------L   63 (328)
T ss_pred             ceEEeeccCCchHHHHHHhcC--CeEEEEEecCHHHHHHHHHhCCC-----CceeechHhhcChhh-------------c
Confidence            479999999999998777652  34789999999999999987543     344555655443211             1


Q ss_pred             CC-CCCceeecCCccccCc
Q 014571          343 NN-YITSQTSDSMKLHKEV  360 (422)
Q Consensus       343 ~~-~FD~VLvDaPCSg~G~  360 (422)
                      .. .+|.++--+||-+--.
T Consensus        64 ~~~~~DvligGpPCQ~FS~   82 (328)
T COG0270          64 RKSDVDVLIGGPPCQDFSI   82 (328)
T ss_pred             cccCCCEEEeCCCCcchhh
Confidence            11 5899999999998666

>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]

Probab=88.21  E-value=0.88  Score=46.55  Aligned_cols=40  Identities=30%  Similarity=0.530  Sum_probs=38.3

Q ss_pred             CEEEEccccHHHHH-cCCccccCceeeccCCccCCCEEEEe
Q 014571          124 KEVIVSRKCAEAVL-RGAQVYVPGVMACSSHVEKGDVVAVS  163 (422)
Q Consensus       124 k~ViVd~~~~eaVl-rGA~v~~PGil~~~~~~~~gd~V~v~  163 (422)
                      -.|+||.+|.+|++ .|..+...||.....+|..||.|.+.
T Consensus       280 G~i~iD~GA~~Al~~~gkSLLpaGV~~V~G~F~rGdvV~i~  320 (369)
T COG0263         280 GEITVDAGAVEALLEQGKSLLPAGVTSVEGNFSRGDVVRIR  320 (369)
T ss_pred             ceEEECccHHHHHHhcCCccccccceEeeeeecCCCEEEEe
Confidence            67999999999999 89999999999999999999999998

>PRK10458 DNA cytosine methylase; Provisional

Probab=87.50  E-value=1.9  Score=45.98  Aligned_cols=94  Identities=10%  Similarity=0.001  Sum_probs=58.2

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC---CCcccc
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN---DEPNMC  338 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~---~~~~~~  338 (422)
                      .-+++|+|||.||.+.-+-+. + --.|.|+|+++...+..+.|..  +.+....+..|.+++........   ......
T Consensus        88 ~~~~iDLFsGiGGl~lGfe~a-G-~~~v~a~Eid~~A~~TY~~N~~--~~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~~  163 (467)
T PRK10458         88 AFRFIDLFAGIGGIRRGFEAI-G-GQCVFTSEWNKHAVRTYKANWY--CDPATHRFNEDIRDITLSHKEGVSDEEAAEHI  163 (467)
T ss_pred             CceEEEeCcCccHHHHHHHHc-C-CEEEEEEechHHHHHHHHHHcC--CCCccceeccChhhCccccccccchhhhhhhh
Confidence            458999999999999888655 2 2367899999999998888732  11233455567666532110000   000000


Q ss_pred             CCCCCCCCCceeecCCccccCc
Q 014571          339 NSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      ... ...+|.++--+||.+--.
T Consensus       164 ~~~-~p~~DvL~gGpPCQ~FS~  184 (467)
T PRK10458        164 RQH-IPDHDVLLAGFPCQPFSL  184 (467)
T ss_pred             hcc-CCCCCEEEEcCCCCccch
Confidence            001 124799999999998654

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=87.42  E-value=2.1  Score=41.12  Aligned_cols=103  Identities=14%  Similarity=-0.003  Sum_probs=62.4

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      .-.+.||++||-|..|-++..-+  --+|..+|..++.++.+++.+...+-....+++.-...+..              
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~~--f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P--------------  118 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLPV--FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTP--------------  118 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCCC---SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG-----------------
T ss_pred             CcceEEecccccchhHHHHHHHh--cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccC--------------
Confidence            46789999999999998876543  35899999999999999976544221223444433332211              


Q ss_pred             CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHH-HHHHHh-ccceeccEEEe
Q 014571          341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQE-EINALV-VGLRIQKVLVL  406 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~-~IL~~a-~~lr~~~~~~~  406 (422)
                       ...+||.|-+                     +|-..     .|+.-|. +.|+++ .+|+.+|++|+
T Consensus       119 -~~~~YDlIW~---------------------QW~lg-----hLTD~dlv~fL~RCk~~L~~~G~Ivv  159 (218)
T PF05891_consen  119 -EEGKYDLIWI---------------------QWCLG-----HLTDEDLVAFLKRCKQALKPNGVIVV  159 (218)
T ss_dssp             --TT-EEEEEE---------------------ES-GG-----GS-HHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             -CCCcEeEEEe---------------------hHhhc-----cCCHHHHHHHHHHHHHhCcCCcEEEE
Confidence             1234565543                     67643     4555555 666666 67999999998

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PRK13699 putative methylase; Provisional

Probab=86.81  E-value=1.3  Score=42.49  Aligned_cols=49  Identities=16%  Similarity=0.085  Sum_probs=38.0

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG  310 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g  310 (422)
                      -.+|+.|||-++|.|. |...|..++  -..+++|+++.-.+.+.++++...
T Consensus       161 s~~g~~vlDpf~Gsgt-t~~aa~~~~--r~~~g~e~~~~y~~~~~~r~~~~~  209 (227)
T PRK13699        161 THPNAIVLDPFAGSGS-TCVAALQSG--RRYIGIELLEQYHRAGQQRLAAVQ  209 (227)
T ss_pred             CCCCCEEEeCCCCCCH-HHHHHHHcC--CCEEEEecCHHHHHHHHHHHHHHH
Confidence            4689999999999995 333334432  478899999999999998887753

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=86.56  E-value=0.9  Score=44.29  Aligned_cols=81  Identities=16%  Similarity=0.226  Sum_probs=57.0

Q ss_pred             ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEE
Q 014571          239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY  317 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~  317 (422)
                      +.-.+..|+.+..++.   +-++.++||.++||.|+-...|.+-..+ +-+|+|+|.|+..++..+++....- +++...
T Consensus        52 kdR~wL~~Efpel~~~---~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e-~~~~af  127 (264)
T KOG2361|consen   52 KDRNWLLREFPELLPV---DEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE-SRVEAF  127 (264)
T ss_pred             chhHHHHHhhHHhhCc---cccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch-hhhccc
Confidence            3444455555544322   1223338999999999999999886543 4799999999999999998865543 557777


Q ss_pred             ecchhh
Q 014571          318 KLDALK  323 (422)
Q Consensus       318 ~~Da~~  323 (422)
                      +.|.+.
T Consensus       128 v~Dlt~  133 (264)
T KOG2361|consen  128 VWDLTS  133 (264)
T ss_pred             ceeccc
Confidence            777664

>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []

Probab=85.18  E-value=0.87  Score=43.35  Aligned_cols=84  Identities=21%  Similarity=0.221  Sum_probs=46.5

Q ss_pred             cceEEEeChhHHHHHHhc--CCCCCCeEEEecCCCChhHHHHHhc---cCCCcEEEEEcCChHHHHHHHHHHHHhCCcce
Q 014571          240 EGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASL---LRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI  314 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L--~p~pg~~VLD~CAgpGgKT~~la~l---~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv  314 (422)
                      .|.-.+|.+-=|++...|  +.+ .+.|+.++.+-||-+...|++   +++.++|+++|++-....+.......+ .+.|
T Consensus        10 ~G~pi~q~P~Dm~~~qeli~~~k-Pd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~-~~rI   87 (206)
T PF04989_consen   10 LGRPIIQYPQDMVAYQELIWELK-PDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPM-SPRI   87 (206)
T ss_dssp             TTEEESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG-----TTE
T ss_pred             CCeehhcCHHHHHHHHHHHHHhC-CCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccc-cCce
Confidence            366666666555554433  233 469999999999998877754   457899999999755443322222122 2679


Q ss_pred             EEEecchhhhh
Q 014571          315 TTYKLDALKAV  325 (422)
Q Consensus       315 ~~~~~Da~~~~  325 (422)
                      +++++|+....
T Consensus        88 ~~i~Gds~d~~   98 (206)
T PF04989_consen   88 TFIQGDSIDPE   98 (206)
T ss_dssp             EEEES-SSSTH
T ss_pred             EEEECCCCCHH
Confidence            99999987654

Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=85.17  E-value=1.2  Score=40.23  Aligned_cols=47  Identities=17%  Similarity=0.120  Sum_probs=35.5

Q ss_pred             EEEcCChHHHHHHHHHHHHhC---CcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceee
Q 014571          290 VAVDRSHNKVMDIQKLAAEMG---LKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       290 ~A~D~s~~rl~~l~~~l~r~g---~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                      .|+|.|+.+++.++++.+..+   ..+|+++++|+..++..               .+.||.|++
T Consensus         1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~---------------~~~fD~v~~   50 (160)
T PLN02232          1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFD---------------DCEFDAVTM   50 (160)
T ss_pred             CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCC---------------CCCeeEEEe
Confidence            479999999999988765432   35799999999875421               346898885

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=84.59  E-value=1.6  Score=42.72  Aligned_cols=20  Identities=50%  Similarity=0.657  Sum_probs=17.6

Q ss_pred             EEeecCCCCHHHHHHHHHHH
Q 014571           48 IRVNTLKTTTDDVIQKLLAI   67 (422)
Q Consensus        48 ~Rvnt~~~~~~~~~~~l~~~   67 (422)
                      |||||+|+|++++++.|.+.
T Consensus         1 ~RvN~lk~~~~~~~~~l~~~   20 (264)
T TIGR00446         1 IRVNTLKISVADLLQRLENR   20 (264)
T ss_pred             CeecCCCCCHHHHHHHHHhC
Confidence            69999999999999988644

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=84.41  E-value=6  Score=41.03  Aligned_cols=87  Identities=10%  Similarity=0.071  Sum_probs=64.4

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH--HHHhC---C--cceEEEecchhhhhhccCCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL--AAEMG---L--KCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~--l~r~g---~--~nv~~~~~Da~~~~~~~~~~  331 (422)
                      .+.-++||=++.|-|--..++... ..-++|+-+|.++++++..+++  ++..+   +  +.++++..|+..+....   
T Consensus       287 ~~~a~~vLvlGGGDGLAlRellky-P~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a---  362 (508)
T COG4262         287 VRGARSVLVLGGGDGLALRELLKY-PQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA---  362 (508)
T ss_pred             ccccceEEEEcCCchHHHHHHHhC-CCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh---
Confidence            355678999999988766666655 3368999999999999999844  34432   2  45899999999886432   


Q ss_pred             CCCccccCCCCCCCCCceeecCCccccCc
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                                 .+.||.|++|-|=-.+-+
T Consensus       363 -----------~~~fD~vIVDl~DP~tps  380 (508)
T COG4262         363 -----------ADMFDVVIVDLPDPSTPS  380 (508)
T ss_pred             -----------cccccEEEEeCCCCCCcc
Confidence                       357999999987555433

>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=83.95  E-value=2.2  Score=42.31  Aligned_cols=70  Identities=24%  Similarity=0.274  Sum_probs=49.6

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +.||..-.|++|+|||-|-++...   .-.|+|+|.-+     +.+++-..|  .|+-...|+.++-..           
T Consensus       209 L~~~M~avDLGAcPGGWTyqLVkr---~m~V~aVDng~-----ma~sL~dtg--~v~h~r~DGfk~~P~-----------  267 (358)
T COG2933         209 LAPGMWAVDLGACPGGWTYQLVKR---NMRVYAVDNGP-----MAQSLMDTG--QVTHLREDGFKFRPT-----------  267 (358)
T ss_pred             hcCCceeeecccCCCccchhhhhc---ceEEEEeccch-----hhhhhhccc--ceeeeeccCcccccC-----------
Confidence            468999999999999999887765   57999999763     223333333  477777888876421           


Q ss_pred             CCCCCCCCCceeecC
Q 014571          339 NSKDNNYITSQTSDS  353 (422)
Q Consensus       339 ~~~~~~~FD~VLvDa  353 (422)
                          ....|...||-
T Consensus       268 ----r~~idWmVCDm  278 (358)
T COG2933         268 ----RSNIDWMVCDM  278 (358)
T ss_pred             ----CCCCceEEeeh
Confidence                23467777774

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=82.11  E-value=5.7  Score=31.86  Aligned_cols=58  Identities=28%  Similarity=0.240  Sum_probs=39.4

Q ss_pred             EEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          265 ILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       265 VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      ++|++||+|..+ .++........++++|.+..++...+......+...+.+...|...
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALG  109 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEecccc
Confidence            999999999977 5555533224889999999999885554443222225666666554

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=81.40  E-value=4.5  Score=41.40  Aligned_cols=52  Identities=23%  Similarity=0.298  Sum_probs=40.3

Q ss_pred             hcCCCCCCeEEEecCC-CChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          256 ALDPQKGERILDMCAA-PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAg-pGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      ..+.+||++|+=.++| -|.-+.++|..|+  .+|+|+|++++|++.+++    +|.+.
T Consensus       161 ~~~~~pG~~V~I~G~GGlGh~avQ~Aka~g--a~Via~~~~~~K~e~a~~----lGAd~  213 (339)
T COG1064         161 KANVKPGKWVAVVGAGGLGHMAVQYAKAMG--AEVIAITRSEEKLELAKK----LGADH  213 (339)
T ss_pred             hcCCCCCCEEEEECCcHHHHHHHHHHHHcC--CeEEEEeCChHHHHHHHH----hCCcE
Confidence            3568899999887776 4456777777775  899999999999987765    67654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	422
2yxl_A	450	Crystal Structure Of Ph0851 Length = 450		2e-11
2b9e_A	309	Human Nsun5 Protein Length = 309		1e-10
3a4t_A	274	Crystal Structure Of Atrm4 From M.Jannaschii With S		3e-09
1ixk_A	315	Crystal Structure Analysis Of Methyltransferase Hom		2e-08
1sqf_A	429	The Crystal Structure Of E. Coli Fmu Binary Complex		6e-07
3m6u_A	464	Multi-Site-Specific 16s Rrna Methyltransferase Rsmf		3e-05
3m6w_A	464	Multi-Site-Specific 16s Rrna Methyltransferase Rsmf		3e-05
3m6x_A	464	Multi-Site-Specific 16s Rrna Methyltransferase Rsmf		6e-05

>pdb|2YXL|A Chain A, Crystal Structure Of Ph0851 Length = 450

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 52/85 (61%)
Query: 240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKV 299
           EG+I +Q   S V +  LDP+ GE ++D+ AAPGGKTT +A L++++G++ A D    ++
Sbjct: 238 EGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRM 297
Query: 300 MDIQKLAAEMGLKCITTYKLDALKA 324
             ++     MG+K +     DA KA
Sbjct: 298 KRLKDFVKRMGIKIVKPLVKDARKA 322

>pdb|2B9E|A Chain A, Human Nsun5 Protein Length = 309

Iteration: 1
 Score = 64.3 bits (155), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 8/136 (5%)
Query: 194 YFERSGL-YIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLE------GEIFLQ 246
           YF+R G  Y G+ +++     + +    +   +   +   P+  D+ E      G + LQ
Sbjct: 29  YFKRQGFSYQGRASSLDDLRAL-KGKHFLLDPLMPELLVFPAQTDLHEHPLYRAGHLILQ 87
Query: 247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA 306
           +  S + A  LDP  G  ++D CAAPG KT+ +A+LL+++G++ A D    ++  +  L 
Sbjct: 88  DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLL 147
Query: 307 AEMGLKCITTYKLDAL 322
           A  G+ C    + D L
Sbjct: 148 ARAGVSCCELAEEDFL 163

>pdb|3A4T|A Chain A, Crystal Structure Of Atrm4 From M.Jannaschii With Sinefungin Length = 274

Iteration: 1
 Score = 59.7 bits (143), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 54/90 (60%)
Query: 222 AVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIAS 281
           A ++    F + S  + L G    Q++ S++    L+P++ + ILDMCAAPGGKTT +A 
Sbjct: 44  AFEVKKSPFSIGSTPEYLFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQ 103
Query: 282 LLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
           L++++G +VAV+ S  +   ++     MG+
Sbjct: 104 LMKNKGTIVAVEISKTRTKALKSNINRMGV 133

>pdb|1IXK|A Chain A, Crystal Structure Analysis Of Methyltransferase Homolog Protein From Pyrococcus Horikoshii Length = 315

Iteration: 1
 Score = 56.6 bits (135), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 51/93 (54%)
Query: 230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEV 289
           F + S  + L G I++Q   S     ALDP+ GE + D  AAPGGKT+ +A L R++G +
Sbjct: 87  FSITSTPEFLTGLIYIQEASSXYPPVALDPKPGEIVADXAAAPGGKTSYLAQLXRNDGVI 146
Query: 290 VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL 322
            A D   N++ + +   + +G+  +  +   +L
Sbjct: 147 YAFDVDENRLRETRLNLSRLGVLNVILFHSSSL 179

>pdb|1SQF|A Chain A, The Crystal Structure Of E. Coli Fmu Binary Complex With S- Adenosylmethionine At 2.1 A Resolution Length = 429

Iteration: 1
 Score = 52.0 bits (123), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/85 (37%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 229 IFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGE 288
           +  LP F D   G + +Q+  +      L PQ GE ILD+CAAPGGKTT I  +   E +
Sbjct: 217 VHALPGFED---GWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVA-PEAQ 272
Query: 289 VVAVDRSHNKVMDIQKLAAEMGLKC 313
           VVAVD    ++  +      +G+K 
Sbjct: 273 VVAVDIDEQRLSRVYDNLKRLGMKA 297

>pdb|3M6U|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group 43 Length = 464

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
           EG       R    P FY    G  ++Q   +      LDP+ GER+LD+ AAPGGKTT 
Sbjct: 62  EGFYYPEEARPGPHPFFYA---GLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTH 118
Query: 279 IASLLRDEGEVVAVDRSHNKVMDI 302
           +A+ +  +G ++A +    +V  +
Sbjct: 119 LAARMGGKGLLLANEVDGKRVRGL 142

>pdb|3M6W|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 In Complex With S-Adenosyl-L- Methionine Length = 464

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
           EG       R    P FY    G  ++Q   +      LDP+ GER+LD+ AAPGGKTT 
Sbjct: 62  EGFYYPEEARPGPHPFFYA---GLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTH 118
Query: 279 IASLLRDEGEVVAVDRSHNKVMDI 302
           +A+ +  +G ++A +    +V  +
Sbjct: 119 LAARMGGKGLLLANEVDGKRVRGL 142

>pdb|3M6X|A Chain A, Multi-Site-Specific 16s Rrna Methyltransferase Rsmf From Thermus Thermophilus In Space Group P21212 Length = 464

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
           EG       R    P FY    G  ++Q   +      LDP+ GER+LD+ AAPGGKTT 
Sbjct: 62  EGFYYPEEARPGPHPFFYA---GLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTH 118
Query: 279 IASLLRDEGEVVAVDRSHNKVMDI 302
           +A+    +G ++A +    +V  +
Sbjct: 119 LAARXGGKGLLLANEVDGKRVRGL 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	422
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	5e-30
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	1e-29
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	5e-05
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	2e-26
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	3e-25
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	3e-05
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	2e-24
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	1e-23
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	2e-23
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	3e-22
3zv0_C	195	H/ACA ribonucleoprotein complex subunit 4; cell cy	1e-08
3d79_A	179	PUA domain, putative uncharacterized protein PH073	2e-06
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	4e-06
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	4e-06
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	5e-06
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	1e-05
1q7h_A	153	Conserved hypothetical protein; structural genomic	1e-05
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	9e-05
3ocj_A	305	Putative exported protein; structural genomics, PS	1e-04
1xxl_A	239	YCGJ protein; structural genomics, protein structu	2e-04
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	5e-04

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 Length = 309

 Score =  117 bits (294), Expect = 5e-30
 Identities = 33/154 (21%), Positives = 62/154 (40%), Gaps = 5/154 (3%)

Query: 179 ITRGTVLQGSQTDPYYFERSGLYIGQGTAM--MSRAGIFRASEGIAVDMHNRIFQLPSFY 236
                V+   +   + ++     +    A+            E +       + + P + 
Sbjct: 21  TCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPLY- 79

Query: 237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH 296
               G + LQ+  S + A  LDP  G  ++D CAAPG KT+ +A+LL+++G++ A D   
Sbjct: 80  --RAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDA 137

Query: 297 NKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330
            ++  +  L A  G+ C    + D L        
Sbjct: 138 KRLASMATLLARAGVSCCELAEEDFLAVSPSDPR 171

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450

 Score =  118 bits (298), Expect = 1e-29
 Identities = 34/114 (29%), Positives = 57/114 (50%), Gaps = 3/114 (2%)

Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
               + +          +F    EG+I +Q   S V +  LDP+ GE ++D+ AAPGGKT
Sbjct: 218 VPTILKIKGPYNFDTSSAF---NEGKIIVQEEASAVASIVLDPKPGETVVDLAAAPGGKT 274

Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE 330
           T +A L++++G++ A D    ++  ++     MG+K +     DA KA     E
Sbjct: 275 THLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEIIGE 328

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} Length = 450

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 18/62 (29%), Positives = 24/62 (38%), Gaps = 7/62 (11%)

Query: 3   LSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQ 62
           L  +Y   P   W   + E      G +          R    S IRVNTLK   ++VI 
Sbjct: 151 LEWKYLA-P--SW---LIERVKGILGDETEDFFRSVNKRHEWIS-IRVNTLKANVEEVIG 203

Query: 63  KL 64
           +L
Sbjct: 204 EL 205

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A Length = 274

 Score =  106 bits (267), Expect = 2e-26
 Identities = 32/106 (30%), Positives = 54/106 (50%), Gaps = 3/106 (2%)

Query: 228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEG 287
            I   P +   L G    Q++ S++    L+P++ + ILDMCAAPGGKTT +A L++++G
Sbjct: 53  SIGSTPEY---LFGYYMPQSISSMIPPIVLNPREDDFILDMCAAPGGKTTHLAQLMKNKG 109

Query: 288 EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
            +VAV+ S  +   ++     MG+        D  K      ++  
Sbjct: 110 TIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLLKNEI 155

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315

 Score =  103 bits (260), Expect = 3e-25
 Identities = 34/106 (32%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 219 EGIAVDMHN-RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
           EG  +      I   P F   L G I++Q   S+    ALDP+ GE + DM AAPGGKT+
Sbjct: 78  EGFCLTREPFSITSTPEF---LTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTS 134

Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK 323
            +A L+R++G + A D   N++ + +   + +G+  +  +   +L 
Sbjct: 135 YLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLH 180

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 Length = 315

 Score = 44.5 bits (106), Expect = 3e-05
 Identities = 19/64 (29%), Positives = 34/64 (53%), Gaps = 8/64 (12%)

Query: 1  MDLSGRYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDV 60
          +D   R  YS L        + + + +G +   RI++A+ +P    C RVNTLK +  D+
Sbjct: 8  LDKLLRLGYSKLF------ADRYFQLWG-ERAIRIAEAMEKPL-PRCFRVNTLKISVQDL 59

Query: 61 IQKL 64
          +++L
Sbjct: 60 VKRL 63

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* Length = 464

 Score =  103 bits (259), Expect = 2e-24
 Identities = 29/98 (29%), Positives = 45/98 (45%), Gaps = 3/98 (3%)

Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
           EG       R    P F     G  ++Q   +      LDP+ GER+LD+ AAPGGKTT 
Sbjct: 62  EGFYYPEEARPGPHPFF---YAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTH 118

Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT 316
           +A+ +  +G ++A +    +V  + +     G     T
Sbjct: 119 LAARMGGKGLLLANEVDGKRVRGLLENVERWGAPLAVT 156

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A Length = 429

 Score =  101 bits (253), Expect = 1e-23
 Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 5/108 (4%)

Query: 217 ASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKT 276
             + + ++    +  LP F    +G + +Q+  +      L PQ GE ILD+CAAPGGKT
Sbjct: 205 YPDAVRLETPAPVHALPGF---EDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKT 261

Query: 277 TAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA 324
           T I  +   E +VVAVD    ++  +      +G+K  T  + D    
Sbjct: 262 THILEVA-PEAQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYP 307

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} Length = 456

 Score =  100 bits (251), Expect = 2e-23
 Identities = 21/95 (22%), Positives = 43/95 (45%)

Query: 239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNK 298
             G  + Q   +++   A   + GE++LD+CAAPGGK+T +A+ ++ +G +V  +    +
Sbjct: 83  QAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKR 142

Query: 299 VMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
              + +     G+           + V   +   D
Sbjct: 143 AKILSENIERWGVSNAIVTNHAPAELVPHFSGFFD 177

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} Length = 479

 Score = 97.5 bits (243), Expect = 3e-22
 Identities = 26/108 (24%), Positives = 48/108 (44%), Gaps = 5/108 (4%)

Query: 228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRD 285
            +         L G  ++Q   S++   AL  D    +R++D+ AAPG KTT I++ + +
Sbjct: 85  PLGSTAEH---LSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNN 141

Query: 286 EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
           EG ++A + S ++V  +    +  G+  +     D         E  D
Sbjct: 142 EGAILANEFSASRVKVLHANISRCGISNVALTHFDGRVFGAAVPEMFD 189

>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae} Length = 195

 Score = 53.9 bits (129), Expect = 1e-08
 Identities = 18/113 (15%), Positives = 31/113 (27%), Gaps = 33/113 (29%)

Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
           K ++V      AV  GA++ +PG++     +E  D + +                     
Sbjct: 76  KRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVL--------------------- 114

Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
                          G  I    A MS   +     G+   +  R       Y
Sbjct: 115 -----------ITTKGEAIAVAIAQMSTVDLASCDHGVVASV-KRCIMERDLY 155

>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii} Length = 179

 Score = 47.1 bits (112), Expect = 2e-06
 Identities = 23/105 (21%), Positives = 37/105 (35%), Gaps = 31/105 (29%)

Query: 121 KPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGIT 180
           K P+ V+V       +L GA V  PG++     +++GD V V                  
Sbjct: 92  KWPRRVVVDEGAVPHILNGADVMAPGIVDADEGIKEGDFVFV------------------ 133

Query: 181 RGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDM 225
                          E+ G  +  G A+MS   +   + G AV +
Sbjct: 134 -------------VEEKYGRPLAIGIALMSGKVMKEKNRGKAVKV 165

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} PDB: 2gh1_A Length = 284

 Score = 47.2 bits (112), Expect = 4e-06
 Identities = 9/63 (14%), Positives = 20/63 (31%)

Query: 250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309
           S +        K   I+D     G     +  LL +  +   +D     + + ++L   +
Sbjct: 11  SFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLL 70

Query: 310 GLK 312
              
Sbjct: 71  PYD 73

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} Length = 178

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 14/83 (16%), Positives = 27/83 (32%), Gaps = 1/83 (1%)

Query: 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310
            +   AL P+  E + D+    G            +   V  + S  +   I   A  +G
Sbjct: 15  ALAISALAPKPHETLWDIGGGSGSIAIE-WLRSTPQTTAVCFEISEERRERILSNAINLG 73

Query: 311 LKCITTYKLDALKAVRRKNESND 333
           +      +  A +A     ++ D
Sbjct: 74  VSDRIAVQQGAPRAFDDVPDNPD 96

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Length = 275

 Score = 46.9 bits (111), Expect = 5e-06
 Identities = 12/55 (21%), Positives = 21/55 (38%)

Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA 307
            A A   + GE+IL++    G  +  +A  +   G V  +D +         L  
Sbjct: 35  IAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQ 89

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Length = 276

 Score = 45.7 bits (108), Expect = 1e-05
 Identities = 12/70 (17%), Positives = 28/70 (40%), Gaps = 1/70 (1%)

Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312
             H      G ++L+     G +T  +A    D  E+ ++D S   +   ++   + G+K
Sbjct: 29  LHHDTVYPPGAKVLEAGCGIGAQTVILAKNNPD-AEITSIDISPESLEKARENTEKNGIK 87

Query: 313 CITTYKLDAL 322
            +   + +  
Sbjct: 88  NVKFLQANIF 97

>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2 Length = 153

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 17/102 (16%), Positives = 30/102 (29%), Gaps = 32/102 (31%)

Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
             V V       +L G+ ++ PG+++    + KGD++ V                     
Sbjct: 71  NIVTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFV--------------------- 109

Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDM 225
                          G +I  G A M    +     G A  +
Sbjct: 110 -----------KSSKGYFIAVGMAEMDAGEVMATKRGKAARI 140

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Length = 219

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 13/66 (19%), Positives = 30/66 (45%)

Query: 256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCIT 315
               ++G  +LD+    G     ++ ++ ++G+V A+D     V    +   ++GLK + 
Sbjct: 32  EFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVE 91

Query: 316 TYKLDA 321
             K + 
Sbjct: 92  VLKSEE 97

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Length = 305

 Score = 42.8 bits (100), Expect = 1e-04
 Identities = 22/157 (14%), Positives = 45/157 (28%), Gaps = 20/157 (12%)

Query: 155 EKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGI 214
            +G+V    VA +   L G     + R  +L     +  +  R   +     A+     +
Sbjct: 32  LQGNVPGFDVARQIELLHGLAESELGR-FLLLYRGLNAEWTHRLVTHQPGSGALAPLERV 90

Query: 215 FRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGG 274
           F       +    R               F + L   +       + G  +  +      
Sbjct: 91  FYERLPAVLATRERH------------GHFRRALQRHL-------RPGCVVASVPCGWMS 131

Query: 275 KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL 311
           +  A+        ++V +D     +    +LAA   L
Sbjct: 132 ELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHAL 168

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Length = 239

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 14/69 (20%), Positives = 26/69 (37%), Gaps = 3/69 (4%)

Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312
                + +   R+LD+ A  G    A +  +    E + VD +   V      A E G++
Sbjct: 13  MIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVE 69

Query: 313 CITTYKLDA 321
            +   +  A
Sbjct: 70  NVRFQQGTA 78

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} Length = 197

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 14/61 (22%), Positives = 26/61 (42%)

Query: 260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL 319
           ++G+ ++D     G  T  +ASL+ + G V   D     + +  K   ++ L    T   
Sbjct: 21  KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIK 80

Query: 320 D 320
           D
Sbjct: 81  D 81

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	422
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	100.0
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	100.0
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	100.0
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	100.0
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	100.0
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	100.0
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	100.0
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	100.0
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	99.96
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.39
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	99.35
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.32
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.27
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	99.26
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	99.24
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	99.24
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	99.23
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	99.21
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.2
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.19
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	99.17
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.16
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	99.16
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.16
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	99.14
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	99.14
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.13
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.1
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.09
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	99.09
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	99.08
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.08
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	99.08
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	99.06
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.06
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.06
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.05
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.05
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.05
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.05
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	99.04
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.03
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	99.03
3k6r_A	278	Putative transferase PH0793; structural genomics,	99.02
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.0
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	98.99
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	98.99
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	98.98
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	98.97
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	98.97
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	98.96
2b25_A	336	Hypothetical protein; structural genomics, methyl	98.95
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	98.95
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	98.94
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	98.93
2frn_A	278	Hypothetical protein PH0793; structural genomics,	98.92
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	98.92
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	98.91
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	98.9
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	98.9
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.89
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	98.89
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	98.88
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	98.87
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	98.87
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	98.86
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	98.86
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.85
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	98.84
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	98.84
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	98.83
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.83
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	98.83
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	98.81
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	98.81
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.81
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	98.81
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	98.8
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.8
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	98.8
2esr_A	177	Methyltransferase; structural genomics, hypothetic	98.79
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	98.79
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	98.79
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	98.79
1xxl_A	239	YCGJ protein; structural genomics, protein structu	98.78
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	98.78
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	98.77
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	98.76
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.76
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	98.74
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	98.74
3r90_A	188	Malignant T cell-amplified sequence 1; structural	98.73
2h00_A	254	Methyltransferase 10 domain containing protein; st	98.72
1ws6_A	171	Methyltransferase; structural genomics, riken stru	98.71
3d79_A	179	PUA domain, putative uncharacterized protein PH073	98.71
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	98.71
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	98.71
1q7h_A	153	Conserved hypothetical protein; structural genomic	98.71
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.7
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	98.7
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	98.7
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	98.69
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	98.69
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.69
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	98.68
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.67
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	98.67
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	98.67
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	98.67
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	98.67
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	98.65
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	98.65
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.65
3zv0_C	195	H/ACA ribonucleoprotein complex subunit 4; cell cy	98.64
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.64
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	98.63
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.63
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	98.62
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.62
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	98.61
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	98.6
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.58
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	98.58
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.57
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	98.57
3ocj_A	305	Putative exported protein; structural genomics, PS	98.57
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	98.57
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.56
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	98.54
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	98.54
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	98.53
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	98.52
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	98.52
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.52
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	98.52
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.51
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.51
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	98.5
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	98.49
3f4k_A	257	Putative methyltransferase; structural genomics, P	98.48
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	98.48
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	98.47
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	98.46
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	98.46
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.46
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	98.45
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	98.45
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	98.45
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	98.43
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	98.43
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	98.43
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	98.42
2cx0_A	187	Hypothetical protein APE0525; PUA domain, structur	98.42
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	98.4
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	98.38
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	98.37
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	98.37
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.37
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	98.36
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	98.35
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	98.35
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	98.35
1iq8_A	582	Archaeosine tRNA-guanine transglycosylase; (alpha/	98.35
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	98.33
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	98.33
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	98.32
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	98.32
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	98.32
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	98.31
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	98.29
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	98.29
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	98.28
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	98.28
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	98.28
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	98.27
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	98.25
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	98.25
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.24
3lkd_A	542	Type I restriction-modification system methyltrans	98.24
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	98.24
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.23
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	98.23
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	98.21
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	98.21
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.19
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	98.19
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	98.19
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	98.19
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	98.18
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	98.18
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	98.18
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	98.18
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	98.18
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	98.17
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	98.16
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	98.16
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	98.16
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	98.15
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	98.15
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	98.14
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	98.14
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	98.13
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	98.13
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	98.12
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.12
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	98.11
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.11
2o07_A	304	Spermidine synthase; structural genomics, structur	98.11
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	98.1
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	98.09
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.09
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.09
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	98.08
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	98.08
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	98.08
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	98.07
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	98.06
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.05
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	98.05
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	98.04
3ege_A	261	Putative methyltransferase from antibiotic biosyn	98.04
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	98.03
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	98.03
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	98.03
3khk_A	544	Type I restriction-modification system methylation	98.02
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.02
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	98.02
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	97.99
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	97.98
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	97.98
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	97.97
3lcc_A	235	Putative methyl chloride transferase; halide methy	97.96
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	97.94
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	97.94
3i9f_A	170	Putative type 11 methyltransferase; structural gen	97.94
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	97.91
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	97.91
3sso_A	419	Methyltransferase; macrolide, natural product, ros	97.91
2q07_A	306	Uncharacterized protein AF0587; monomer, structura	97.89
3ufb_A	530	Type I restriction-modification system methyltran	97.88
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	97.86
2p7i_A	250	Hypothetical protein; putative methyltransferase,	97.85
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	97.85
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	97.84
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	97.83
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	97.82
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	97.81
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	97.8
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	97.79
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	97.78
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	97.78
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.77
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	97.77
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	97.77
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	97.76
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	97.73
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	97.71
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	97.71
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	97.71
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	97.7
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	97.7
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	97.7
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	97.68
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	97.65
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	97.57
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	97.56
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	97.55
3cc8_A	230	Putative methyltransferase; structural genomics, j	97.5
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	97.49
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	97.46
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	97.46
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	97.44
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	97.41
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.37
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	97.33
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.3
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	97.27
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	97.25
2oo3_A	283	Protein involved in catabolism of external DNA; st	97.2
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	97.2
2p38_A	166	Protein involved in ribosomal biogenesis; two alph	97.13
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	97.09
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	97.09
3u28_A	400	H/ACA ribonucleoprotein complex subunit 4; pseudou	97.09
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	97.06
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.05
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	97.03
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	97.0
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	96.97
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	96.93
2zig_A	297	TTHA0409, putative modification methylase; methylt	96.88
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	96.84
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	96.84
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	96.83
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	96.76
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.74
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	96.68
2j5v_A	367	Glutamate 5-kinase; proline biosynthesis, gamma gl	96.6
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.48
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	96.38
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	96.33
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	96.22
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	96.14
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	96.03
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	95.78
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	95.74
1sqw_A	188	Saccharomyces cerevisiae NIP7P homolog; PUA, unkno	95.74
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	95.74
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	95.71
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	95.67
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	95.61
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	95.5
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	95.4
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	95.35
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	95.24
2aus_C	334	Pseudouridine synthase; isomerase, structural prot	95.1
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	95.04
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	94.57
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	94.56
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	94.47
2apo_A	357	Probable tRNA pseudouridine synthase B; protein-pr	94.47
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	94.4
3me5_A	482	Cytosine-specific methyltransferase; structural ge	93.79
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	92.84
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	92.7
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	92.29
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	91.49
4ft4_B	784	DNA (cytosine-5)-methyltransferase 1; chromodomain	90.94
3swr_A	1002	DNA (cytosine-5)-methyltransferase 1; epigenetics,	90.92
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	88.69
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	88.11
4dkj_A	403	Cytosine-specific methyltransferase; CG-specificit	87.62
3av4_A	1330	DNA (cytosine-5)-methyltransferase 1; CXXC-type zi	87.52
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	85.15
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	83.63
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	82.95
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	81.82
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	80.52
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	80.18

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=100.00  E-value=1.4e-36  Score=306.87  Aligned_cols=159  Identities=23%  Similarity=0.187  Sum_probs=138.5

Q ss_pred             cccCCCCccc--cccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH
Q 014571          228 RIFQLPSFYD--VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL  305 (422)
Q Consensus       228 ~~~~~p~~~~--~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~  305 (422)
                      ++.++|.|..  +.-+.||+||.+||+++.+|+|+||++||||||||||||+|||+++. .+.|+|+|++++|++.+++|
T Consensus       113 ~~~~~p~~~~g~~~vqd~~iQd~aS~l~~~~L~~~pg~~VLD~CAaPGGKT~~la~~~~-~~~l~A~D~~~~R~~~l~~~  191 (359)
T 4fzv_A          113 DISRFPPARPGSLGVMEYYLMDAASLLPVLALGLQPGDIVLDLCAAPGGKTLALLQTGC-CRNLAANDLSPSRIARLQKI  191 (359)
T ss_dssp             CCCCCCCCCBCTTSSBSEEEECGGGHHHHHHHCCCTTEEEEESSCTTCHHHHHHHHTTC-EEEEEEECSCHHHHHHHHHH
T ss_pred             ChhcCCCcccCceeccchhhhCHHHHHHHHHhCCCCCCEEEEecCCccHHHHHHHHhcC-CCcEEEEcCCHHHHHHHHHH
Confidence            4456666642  24567999999999999999999999999999999999999999864 58999999999999999999


Q ss_pred             HHHhCC------cceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcccc--CchhhhhhCCCCCcccccc
Q 014571          306 AAEMGL------KCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK--EVPSIAAEGLNGDKSCKEK  377 (422)
Q Consensus       306 l~r~g~------~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~--G~l~~lrr~p~~~~~w~~~  377 (422)
                      ++++|.      .++.+...|++++...              ..+.||+||+||||||+  |+   +|++|+.+++|++.
T Consensus       192 l~r~~~~~~~~~~~v~v~~~D~~~~~~~--------------~~~~fD~VLlDaPCSg~g~g~---~r~~~~~~~~~~~~  254 (359)
T 4fzv_A          192 LHSYVPEEIRDGNQVRVTSWDGRKWGEL--------------EGDTYDRVLVDVPCTTDRHSL---HEEENNIFKRSRKK  254 (359)
T ss_dssp             HHHHSCTTTTTSSSEEEECCCGGGHHHH--------------STTCEEEEEEECCCCCHHHHT---TCCTTCTTSGGGHH
T ss_pred             HHHhhhhhhccCCceEEEeCchhhcchh--------------ccccCCEEEECCccCCCCCcc---cccChhhhhhCCHH
Confidence            999986      4689999999987532              13579999999999998  66   89999999999887


Q ss_pred             CcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          378 GRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       378 ~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                      ..  ..++.+|++||++|+. +|.||.|||
T Consensus       255 ~~--~~l~~lQ~~iL~~a~~~lkpGG~LVY  282 (359)
T 4fzv_A          255 ER--QILPVLQVQLLAAGLLATKPGGHVVY  282 (359)
T ss_dssp             HH--HTHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             HH--HHHHHHHHHHHHHHHhcCCCCcEEEE
Confidence            65  5899999999999987 799999999

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=100.00  E-value=8.6e-35  Score=304.32  Aligned_cols=217  Identities=19%  Similarity=0.155  Sum_probs=182.6

Q ss_pred             ccCCCCchhhhhhhcccCC---CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeeccc----------------
Q 014571          169 PTLDGGWGLGITRGTVLQG---SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMHN----------------  227 (422)
Q Consensus       169 ~~~~p~W~~~~~r~~~~~~---~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~~----------------  227 (422)
                      .+++|.|+++.++..+...   ..+.+++++++++++|+|+.+++++++.+  ...|+.++...                
T Consensus         5 ~~~~P~~~~~~~~~~~g~~~~~~~~~~a~~~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~   84 (479)
T 2frx_A            5 TVYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRRSIRVNTLKISVADFLQLTAPYGWTLTPIPWCEEGFWIERDNEDAL   84 (479)
T ss_dssp             --CCCHHHHHHHGGGCC----CHHHHHHHTSCCCCCEEECTTTCCHHHHHHHHGGGCCCCCEETTEEEEEC---------
T ss_pred             cccCcHHHHHHHHHHcCccHHHHHHHHhcCCCCCEEEEEeCCCCCHHHHHHHHHHcCCceeecCCCCceEEEecCccccc
Confidence            4689999999998877533   23567788999999999999999998875  23444332211                


Q ss_pred             cccCCCCccccccceEEEeChhHHHHHHhcCCC--CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH
Q 014571          228 RIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQ--KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL  305 (422)
Q Consensus       228 ~~~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~--pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~  305 (422)
                      ++..+|.   |.+|.+|+||.+||+++.+|+++  +|++|||+|||||+||+++|+++++.|.|+|+|+++.|++.+++|
T Consensus        85 ~~~~~~~---~~~G~~~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n  161 (479)
T 2frx_A           85 PLGSTAE---HLSGLFYIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHAN  161 (479)
T ss_dssp             CGGGSHH---HHTTSEEECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHH
T ss_pred             CcccChH---HhCcEEEEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHH
Confidence            2333444   47999999999999999999999  999999999999999999999998889999999999999999999


Q ss_pred             HHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhH
Q 014571          306 AAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECG  385 (422)
Q Consensus       306 l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~  385 (422)
                      ++++|+.||.++++|++.+...              ..+.||+|++||||||.|+   +|++|+..+.|++...  ..++
T Consensus       162 ~~r~g~~nv~~~~~D~~~~~~~--------------~~~~fD~Il~D~PcSg~G~---~~~~pd~~~~~~~~~~--~~l~  222 (479)
T 2frx_A          162 ISRCGISNVALTHFDGRVFGAA--------------VPEMFDAILLDAPCSGEGV---VRKDPDALKNWSPESN--QEIA  222 (479)
T ss_dssp             HHHHTCCSEEEECCCSTTHHHH--------------STTCEEEEEEECCCCCGGG---GGTCTTSSSSCCHHHH--HHHH
T ss_pred             HHHcCCCcEEEEeCCHHHhhhh--------------ccccCCEEEECCCcCCccc---ccCCHHHHhhcCHhHH--HHHH
Confidence            9999999999999999876421              1346999999999999999   9999999999998765  5899


Q ss_pred             HHHHHHHHHhcc-ceeccEEEeh
Q 014571          386 MAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       386 ~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                      .+|++||+++.. |+.+|.||++
T Consensus       223 ~~q~~iL~~a~~~LkpGG~Lvys  245 (479)
T 2frx_A          223 ATQRELIDSAFHALRPGGTLVYS  245 (479)
T ss_dssp             HHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCEEEEe
Confidence            999999999977 8999999993

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=100.00  E-value=8.4e-35  Score=302.88  Aligned_cols=212  Identities=19%  Similarity=0.164  Sum_probs=182.9

Q ss_pred             CCCchhhhhhhcccCC-CCCCCcccCC-CceEEEEccCccCHHHHhc-----------ccCcceeeccccccCCCCcccc
Q 014571          172 DGGWGLGITRGTVLQG-SQTDPYYFER-SGLYIGQGTAMMSRAGIFR-----------ASEGIAVDMHNRIFQLPSFYDV  238 (422)
Q Consensus       172 ~p~W~~~~~r~~~~~~-~~~~~~~~~~-~~v~Vrvg~a~msreel~~-----------~~~GiaV~~~~~~~~~p~~~~~  238 (422)
                      +|.|+++.++..+... ..+.+++|++ ++++||+|+.+++++++.+           .+.|+.+.....+..+|.|   
T Consensus         2 lP~w~~~~~~~~~g~e~~~~l~a~~~~~~~~~lRvN~lk~~~~~~~~~l~~~~~~~~~~~~g~~l~~~~~~~~~~~~---   78 (464)
T 3m6w_A            2 LPKAFLSRMAELLGEEFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISPWPLRPIPWCQEGFYYPEEARPGPHPFF---   78 (464)
T ss_dssp             CCHHHHHHHHHHHGGGHHHHHHHHHTSCCCCEEEECTTTCCHHHHHHHCSSCCEEETTEEEEEECCTTCCCSSSHHH---
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEEcCCCCCHHHHHHHcCCCceecCCCCceEEECCCCCcccChHH---
Confidence            6899999888877533 3466788898 9999999999999998754           2345544433334455555   


Q ss_pred             ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEe
Q 014571          239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK  318 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~  318 (422)
                      .+|.+++||.+||+++.+|++++|++|||+|||||+||+++|+++++.|+|+|+|+++.|++.+++|++++|+. |.+++
T Consensus        79 ~~G~~~vQd~ss~l~a~~L~~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~G~~-v~~~~  157 (464)
T 3m6w_A           79 YAGLYYIQEPSAQAVGVLLDPKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERWGAP-LAVTQ  157 (464)
T ss_dssp             HTTSEEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHCCC-CEEEC
T ss_pred             hCCeEEEECHHHHHHHHhcCcCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCe-EEEEE
Confidence            79999999999999999999999999999999999999999999988899999999999999999999999998 99999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-  397 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-  397 (422)
                      +|++.+....              .+.||+|++||||||.|+   +|++|+..+.|++...  ..++.+|++||+++.. 
T Consensus       158 ~Da~~l~~~~--------------~~~FD~Il~D~PcSg~G~---~rr~pd~~~~~~~~~~--~~l~~~Q~~iL~~a~~~  218 (464)
T 3m6w_A          158 APPRALAEAF--------------GTYFHRVLLDAPCSGEGM---FRKDREAARHWGPSAP--KRMAEVQKALLAQASRL  218 (464)
T ss_dssp             SCHHHHHHHH--------------CSCEEEEEEECCCCCGGG---TTTCTTSGGGCCTTHH--HHHHHHHHHHHHHHHTT
T ss_pred             CCHHHhhhhc--------------cccCCEEEECCCcCCccc---cccChHHhhhcCHHHH--HHHHHHHHHHHHHHHHh
Confidence            9998865211              356999999999999999   9999999999988765  6899999999999987 


Q ss_pred             ceeccEEEe
Q 014571          398 LRIQKVLVL  406 (422)
Q Consensus       398 lr~~~~~~~  406 (422)
                      |+.+|.||+
T Consensus       219 LkpGG~Lvy  227 (464)
T 3m6w_A          219 LGPGGVLVY  227 (464)
T ss_dssp             EEEEEEEEE
T ss_pred             cCCCcEEEE
Confidence            799999998

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=100.00  E-value=4.5e-33  Score=288.83  Aligned_cols=231  Identities=24%  Similarity=0.298  Sum_probs=190.6

Q ss_pred             cccCHHHHHHHHHHhchhhHHHHHHHhc-CCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCcc
Q 014571           13 LRWNPQVEEYFIRAYGADHFSRISKALT-RPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI   91 (422)
Q Consensus        13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~-~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (422)
                      .++++.+.+.+.+.|| +.++++++++. .||. .++||||+|++++++++.|.+.         |             +
T Consensus       155 ~~~P~w~~~~~~~~~g-~~~~~~~~a~~~~~~~-~~~Rvn~~k~~~~~~~~~L~~~---------g-------------~  210 (450)
T 2yxl_A          155 YLAPSWLIERVKGILG-DETEDFFRSVNKRHEW-ISIRVNTLKANVEEVIGELEED---------G-------------V  210 (450)
T ss_dssp             HTSCHHHHHHHHHHHG-GGHHHHHHHHHCCCCE-EEEEECTTTCCHHHHHHHHHHT---------T-------------C
T ss_pred             hcCcHHHHHHHHHHhh-HHHHHHHHhcCCCCCC-EEEEEcCCCCCHHHHHHHHHhC---------C-------------c
Confidence            3578889999999999 77999999999 7775 5999999999999999988754         3             2


Q ss_pred             ccccCCCCCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccC
Q 014571           92 SESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTL  171 (422)
Q Consensus        92 ~~~~~~~l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~  171 (422)
                      ...++|.+++.+.++..                                                               
T Consensus       211 ~~~~~~~~~~~~~~~~~---------------------------------------------------------------  227 (450)
T 2yxl_A          211 EVVRSERVPTILKIKGP---------------------------------------------------------------  227 (450)
T ss_dssp             CEEECSSCTTEEEEESC---------------------------------------------------------------
T ss_pred             cceecCccCceEEeCCC---------------------------------------------------------------
Confidence            22334444444333200                                                               


Q ss_pred             CCCchhhhhhhcccCCCCCCCcccCCCceEEEEccCccCHHHHhcccCcceeeccccccCCCCccccccceEEEeChhHH
Q 014571          172 DGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSI  251 (422)
Q Consensus       172 ~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~~~~~GiaV~~~~~~~~~p~~~~~~~G~~~~Qd~~S~  251 (422)
                                                                             .++..+|.|   .+|.+++||.+||
T Consensus       228 -------------------------------------------------------~~~~~~~~~---~~G~~~~qd~~s~  249 (450)
T 2yxl_A          228 -------------------------------------------------------YNFDTSSAF---NEGKIIVQEEASA  249 (450)
T ss_dssp             -------------------------------------------------------CCTTSCHHH---HTTSEEECCHHHH
T ss_pred             -------------------------------------------------------CCcccCchh---hCceEEecCchhH
Confidence                                                                   011123333   5899999999999


Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      +++.++++++|++|||+|||||+||+++++.+++.++|+|+|+++.+++.+++|++++|++++.++++|+.......   
T Consensus       250 l~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~---  326 (450)
T 2yxl_A          250 VASIVLDPKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRMGIKIVKPLVKDARKAPEII---  326 (450)
T ss_dssp             HHHHHHCCCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCTTCCSSSS---
T ss_pred             HHHHhcCCCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEEEcChhhcchhh---
Confidence            99999999999999999999999999999999777999999999999999999999999999999999987643110   


Q ss_pred             CCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                                ..+.||.|++||||||.|+   ++++|+..|.|++...  ..++.+|.+||+++.. ++.+|.+++
T Consensus       327 ----------~~~~fD~Vl~D~Pcsg~g~---~~~~pd~~~~~~~~~~--~~l~~~q~~iL~~a~~~LkpGG~lvy  387 (450)
T 2yxl_A          327 ----------GEEVADKVLLDAPCTSSGT---IGKNPELRWRLREDKI--NEMSQLQRELLESAARLVKPGGRLLY  387 (450)
T ss_dssp             ----------CSSCEEEEEEECCCCCGGG---TTTSTTHHHHCCTTSH--HHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             ----------ccCCCCEEEEcCCCCCCee---eccChhhhhhCCHHHH--HHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence                      1256999999999999999   9999999888887655  6899999999999987 799999998

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=100.00  E-value=7.3e-35  Score=302.84  Aligned_cols=210  Identities=18%  Similarity=0.139  Sum_probs=178.0

Q ss_pred             cCCCCchhhhhhhcccCC-CCCCCcccCCCc-eEEEEccCccCHHHHhc--------------ccCcceeeccccccCCC
Q 014571          170 TLDGGWGLGITRGTVLQG-SQTDPYYFERSG-LYIGQGTAMMSRAGIFR--------------ASEGIAVDMHNRIFQLP  233 (422)
Q Consensus       170 ~~~p~W~~~~~r~~~~~~-~~~~~~~~~~~~-v~Vrvg~a~msreel~~--------------~~~GiaV~~~~~~~~~p  233 (422)
                      .++|.|+++.++..+... ..+.+++|++++ ++||+|+.++  +++.+              .+.|+.   ...+..+|
T Consensus         6 ~~~P~w~~~~~~~~~g~e~~~~~~a~~~~~~~~~lRvN~lk~--~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~   80 (456)
T 3m4x_A            6 TTLPQQFIKKYRLLLGEEASDFFSALEQGSVKKGFRWNPLKP--AGLDMVQTYHSEELQPAPYSNEGFL---GTVNGKSF   80 (456)
T ss_dssp             -CCCHHHHHHHHHHHGGGHHHHHHHHHHCCCCCEEECCTTST--THHHHHHHHTCSSCCBCTTCTTEEE---SCCCTTSH
T ss_pred             hhChHHHHHHHHHHhCHHHHHHHHHcCCCCCCcEEEEcCccH--HHHHHhcCCcccccCCCCCCcceEE---cCCCCCCh
Confidence            578999999888877533 346678889999 9999999998  44432              122332   11233444


Q ss_pred             CccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          234 SFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       234 ~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      .|   .+|++++||.+||+++.+|++++|++|||+|||||+||+++|+++++.|+|+|+|+++.|++.+++|++++|+.|
T Consensus        81 ~~---~~G~~~vQd~ss~l~~~~L~~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~g~~n  157 (456)
T 3m4x_A           81 LH---QAGYEYSQEPSAMIVGTAAAAKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERWGVSN  157 (456)
T ss_dssp             HH---HTTSCEECCTTTHHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHHTCSS
T ss_pred             HH---hCCcEEEECHHHHHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCc
Confidence            44   799999999999999999999999999999999999999999999888999999999999999999999999999


Q ss_pred             eEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHH
Q 014571          314 ITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINA  393 (422)
Q Consensus       314 v~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~  393 (422)
                      |.++++|+..+....              .+.||+||+||||||+|+   +|++|+..++|++...  ..++.+|++||+
T Consensus       158 v~v~~~Da~~l~~~~--------------~~~FD~Il~DaPCSg~G~---~rr~p~~~~~~~~~~~--~~l~~~Q~~iL~  218 (456)
T 3m4x_A          158 AIVTNHAPAELVPHF--------------SGFFDRIVVDAPCSGEGM---FRKDPNAIKEWTEESP--LYCQKRQQEILS  218 (456)
T ss_dssp             EEEECCCHHHHHHHH--------------TTCEEEEEEECCCCCGGG---TTTCHHHHHHCCTTHH--HHHHHHHHHHHH
T ss_pred             eEEEeCCHHHhhhhc--------------cccCCEEEECCCCCCccc---cccCHHHhhhcCHHHH--HHHHHHHHHHHH
Confidence            999999998865311              356999999999999999   9999999988988765  689999999999


Q ss_pred             Hhcc-ceeccEEEe
Q 014571          394 LVVG-LRIQKVLVL  406 (422)
Q Consensus       394 ~a~~-lr~~~~~~~  406 (422)
                      ++.. |+.+|.||+
T Consensus       219 ~a~~~LkpGG~LvY  232 (456)
T 3m4x_A          219 SAIKMLKNKGQLIY  232 (456)
T ss_dssp             HHHHTEEEEEEEEE
T ss_pred             HHHHhcCCCcEEEE
Confidence            9976 799999998

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=100.00  E-value=1.4e-33  Score=279.78  Aligned_cols=194  Identities=19%  Similarity=0.274  Sum_probs=145.7

Q ss_pred             CCCceEEEEccCccCHHHHhc--ccCcceeecc------------------------------ccccCCCCccccccceE
Q 014571          196 ERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMH------------------------------NRIFQLPSFYDVLEGEI  243 (422)
Q Consensus       196 ~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~------------------------------~~~~~~p~~~~~~~G~~  243 (422)
                      ..+++++|+|+.+++++++.+  ...|+.++..                              .++..+|.   |++|.+
T Consensus         8 ~~~p~~lRvN~lk~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~---~~~G~~   84 (309)
T 2b9e_A            8 SQLPRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPL---YRAGHL   84 (309)
T ss_dssp             -CCCEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHH---HHTTSE
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeeccccccccccccccccccccCCCceEEeCCCCCcccChH---HHCCeE
Confidence            567899999999999998775  3456554332                              12223333   479999


Q ss_pred             EEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       244 ~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      ++||.+||+++.+|++++|++|||+|||||+||+++|+++++.|+|+|+|+++.|++.+++|++++|+.||+++++|+..
T Consensus        85 ~~Qd~~s~l~~~~l~~~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~r~g~~~v~~~~~D~~~  164 (309)
T 2b9e_A           85 ILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLA  164 (309)
T ss_dssp             EECCTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGG
T ss_pred             EEECHHHHHHHHHhCCCCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCChHh
Confidence            99999999999999999999999999999999999999998889999999999999999999999999999999999987


Q ss_pred             hhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhccceeccE
Q 014571          324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKV  403 (422)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~lr~~~~  403 (422)
                      +....            .....||+||+||||||+|+   +|++|+..+.+.....++..++.+|++||++|+.+..+|.
T Consensus       165 ~~~~~------------~~~~~fD~Vl~D~PcSg~G~---~~r~pd~~~~~~~~~~~~~~l~~~Q~~iL~~a~~~l~gG~  229 (309)
T 2b9e_A          165 VSPSD------------PRYHEVHYILLDPSCSGSGM---PSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQR  229 (309)
T ss_dssp             SCTTC------------GGGTTEEEEEECCCCCC---------------------CCHHHHHHHHHHHHHHHTTCTTCCE
T ss_pred             cCccc------------cccCCCCEEEEcCCcCCCCC---CccCCChhhhccCCHHHHHHHHHHHHHHHHHHHhccCCCE
Confidence            53210            00146999999999999999   9999998754322223346899999999999987534899


Q ss_pred             EEeh
Q 014571          404 LVLT  407 (422)
Q Consensus       404 ~~~t  407 (422)
                      ||++
T Consensus       230 lvYs  233 (309)
T 2b9e_A          230 LVYS  233 (309)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9983

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=100.00  E-value=3.6e-34  Score=284.02  Aligned_cols=219  Identities=19%  Similarity=0.159  Sum_probs=178.2

Q ss_pred             cccccCCCCchhhhhhhcccCC-CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeecc-------------ccc
Q 014571          166 VEQPTLDGGWGLGITRGTVLQG-SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMH-------------NRI  229 (422)
Q Consensus       166 l~~~~~~p~W~~~~~r~~~~~~-~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~-------------~~~  229 (422)
                      +.-.+++|.|+++.++..+... ..+.+++++++++++|+|+.+.+++++.+  ...|+.++..             .++
T Consensus        10 l~~~~~~P~w~~~~~~~~~g~~~~~~~~~~~~~~p~~~RvN~~k~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~   89 (315)
T 1ixk_A           10 KLLRLGYSKLFADRYFQLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRVPWAKEGFCLTREPFSI   89 (315)
T ss_dssp             HHHHTTCCHHHHHHHHHHHTTHHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEETTEEEEEEEEECSSCG
T ss_pred             HHHHhCCcHHHHHHHHHHccHHHHHHHHHcCCCCCeEEEEeCCCCCHHHHHHHHHhCCCeeeECCCCCceEEEeCCCCCc
Confidence            4556899999999988776511 24567788999999999999999998875  2345443322             123


Q ss_pred             cCCCCccccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh
Q 014571          230 FQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM  309 (422)
Q Consensus       230 ~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~  309 (422)
                      ..+|.   |.+|.+++||.+||+++.++++++|++|||+|||||+||+++++.+++.++|+|+|+++.+++.+++|++++
T Consensus        90 ~~~~~---~~~G~~~~qd~~s~l~~~~l~~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~  166 (315)
T 1ixk_A           90 TSTPE---FLTGLIYIQEASSMYPPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL  166 (315)
T ss_dssp             GGSHH---HHTTSEEECCHHHHHHHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH
T ss_pred             ccChh---HhcceEEEeCHHHHHHHHHhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh
Confidence            33444   479999999999999999999999999999999999999999999887899999999999999999999999


Q ss_pred             CCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHH
Q 014571          310 GLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQE  389 (422)
Q Consensus       310 g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~  389 (422)
                      |+.|++++++|+..+...               .+.||.|++|+||||.|+   ++++|+..++|++...  .+++..|+
T Consensus       167 g~~~v~~~~~D~~~~~~~---------------~~~fD~Il~d~Pcsg~g~---~~~~p~~~~~~~~~~~--~~~~~~q~  226 (315)
T 1ixk_A          167 GVLNVILFHSSSLHIGEL---------------NVEFDKILLDAPCTGSGT---IHKNPERKWNRTMDDI--KFCQGLQM  226 (315)
T ss_dssp             TCCSEEEESSCGGGGGGG---------------CCCEEEEEEECCTTSTTT---CC--------CCHHHH--HHHHHHHH
T ss_pred             CCCeEEEEECChhhcccc---------------cccCCEEEEeCCCCCccc---ccCChhHhhcCCHHHH--HHHHHHHH
Confidence            999999999999876421               246999999999999999   9999999988988765  58999999


Q ss_pred             HHHHHhcc-ceeccEEEeh
Q 014571          390 EINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       390 ~IL~~a~~-lr~~~~~~~t  407 (422)
                      ++|+++.. |+.+|.++++
T Consensus       227 ~~L~~~~~~LkpGG~lv~s  245 (315)
T 1ixk_A          227 RLLEKGLEVLKPGGILVYS  245 (315)
T ss_dssp             HHHHHHHHHEEEEEEEEEE
T ss_pred             HHHHHHHHhCCCCCEEEEE
Confidence            99999977 8999999994

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=100.00  E-value=3.4e-32  Score=280.43  Aligned_cols=230  Identities=22%  Similarity=0.244  Sum_probs=187.5

Q ss_pred             cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571           13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS   92 (422)
Q Consensus        13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (422)
                      .+++..+.+.+.+.|| +.++++++++..||. .++||||+|++++++++.|.+.         |             +.
T Consensus       143 ~~~p~w~~~~~~~~~g-~~~~~~~~~~~~~~~-~~~Rvn~~~~~~~~~~~~l~~~---------g-------------~~  198 (429)
T 1sqg_A          143 YLHPSWLLKRLQKAYP-EQWQSIVEANNQRPP-MWLRINRTHHSRDSWLALLDEA---------G-------------MK  198 (429)
T ss_dssp             GCSCHHHHHHHHHHCT-TTHHHHHHHHTSCCC-EEEEECTTTCCHHHHHHHHHHT---------T-------------CC
T ss_pred             hcCcHHHHHHHHHHhh-HHHHHHHHhCCCCCC-eEEEEcCCCCCHHHHHHHHHhC---------C-------------Cc
Confidence            4577889999999999 679999999998876 8999999999999999887643         3             22


Q ss_pred             cccCCCCCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCC
Q 014571           93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD  172 (422)
Q Consensus        93 ~~~~~~l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~  172 (422)
                      ..+.|+.++.+.++..                                                                
T Consensus       199 ~~~~~~~~~~~~~~~~----------------------------------------------------------------  214 (429)
T 1sqg_A          199 GFPHADYPDAVRLETP----------------------------------------------------------------  214 (429)
T ss_dssp             EECCTTCTTEEEESSC----------------------------------------------------------------
T ss_pred             eeecCCCCCEEEECCC----------------------------------------------------------------
Confidence            2233333333222100                                                                


Q ss_pred             CCchhhhhhhcccCCCCCCCcccCCCceEEEEccCccCHHHHhcccCcceeeccccccCCCCccccccceEEEeChhHHH
Q 014571          173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIV  252 (422)
Q Consensus       173 p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~~~~~GiaV~~~~~~~~~p~~~~~~~G~~~~Qd~~S~l  252 (422)
                                                                            .++..+|.|   .+|.+++||.+||+
T Consensus       215 ------------------------------------------------------~~~~~~~~~---~~G~~~~qd~~s~~  237 (429)
T 1sqg_A          215 ------------------------------------------------------APVHALPGF---EDGWVTVQDASAQG  237 (429)
T ss_dssp             ------------------------------------------------------CCGGGSTTG---GGTSEEECCHHHHT
T ss_pred             ------------------------------------------------------CCcccChHH---hCCCeEeeCHHHHH
Confidence                                                                  011234444   58999999999999


Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      ++.++++++|++|||+|||||+||+++++.+++ ++|+|+|+++.+++.+++|++++|+. +.++++|+.......    
T Consensus       238 ~~~~l~~~~g~~VLDlgaG~G~~t~~la~~~~~-~~v~a~D~~~~~l~~~~~~~~~~g~~-~~~~~~D~~~~~~~~----  311 (429)
T 1sqg_A          238 CMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMK-ATVKQGDGRYPSQWC----  311 (429)
T ss_dssp             HHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCC-CEEEECCTTCTHHHH----
T ss_pred             HHHHcCCCCcCeEEEECCCchHHHHHHHHHcCC-CEEEEECCCHHHHHHHHHHHHHcCCC-eEEEeCchhhchhhc----
Confidence            999999999999999999999999999999865 89999999999999999999999984 789999988654211    


Q ss_pred             CCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                               ..+.||.|++|+||||.|+   ++++|+..|.|++...  ..++.+|+++|+++.. ++.+|.++++
T Consensus       312 ---------~~~~fD~Vl~D~Pcsg~g~---~~~~p~~~~~~~~~~~--~~l~~~q~~~L~~a~~~LkpGG~lvys  373 (429)
T 1sqg_A          312 ---------GEQQFDRILLDAPCSATGV---IRRHPDIKWLRRDRDI--PELAQLQSEILDAIWPHLKTGGTLVYA  373 (429)
T ss_dssp             ---------TTCCEEEEEEECCCCCGGG---TTTCTTHHHHCCTTHH--HHHHHHHHHHHHHHGGGEEEEEEEEEE
T ss_pred             ---------ccCCCCEEEEeCCCCcccc---cCCCcchhhcCCHHHH--HHHHHHHHHHHHHHHHhcCCCCEEEEE
Confidence                     0246999999999999999   9999999877776554  6899999999999987 8999999993

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=99.96  E-value=6.6e-29  Score=240.96  Aligned_cols=192  Identities=23%  Similarity=0.337  Sum_probs=146.1

Q ss_pred             cccCCCceEEEEccCccCHHHHhc--ccCcceeec------------cccccCCCCccccccceEEEeChhHHHHHHhcC
Q 014571          193 YYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDM------------HNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALD  258 (422)
Q Consensus       193 ~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~------------~~~~~~~p~~~~~~~G~~~~Qd~~S~lv~~~L~  258 (422)
                      .+++++++++|+|..+.+++++.+  ...|+.++.            ..++..+|.   |.+|.+++||.+|++++.+++
T Consensus         4 ~~~~~~~~~~rvn~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~G~~~~qd~~s~l~~~~l~   80 (274)
T 3ajd_A            4 VYKGEKMQFIRVNTLKINPEVLKKRLENKGVVLEKTFLDYAFEVKKSPFSIGSTPE---YLFGYYMPQSISSMIPPIVLN   80 (274)
T ss_dssp             -----CCEEEEECTTTCCHHHHHHHHHTTTCEEEECSSTTEEEEEECSSCTTSSHH---HHTTSEEECCSGGGHHHHHHC
T ss_pred             hhCCCCCeEEEEeCCCCCHHHHHHHHHHCCCeecCCCCCceEEEecCCCCcccChh---hhCCeEEEeCHHHHHHHHHhC
Confidence            345778999999999999998875  344554432            112223333   479999999999999999999


Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +++|++|||+|||||+||+++++++++.++|+|+|+++.+++.+++|+++.|+++++++++|+..+.....         
T Consensus        81 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~g~~~v~~~~~D~~~~~~~~~---------  151 (274)
T 3ajd_A           81 PREDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRMGVLNTIIINADMRKYKDYLL---------  151 (274)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHHH---------
T ss_pred             CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHhCCCcEEEEeCChHhcchhhh---------
Confidence            99999999999999999999999987779999999999999999999999999999999999987653210         


Q ss_pred             CCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          339 NSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                        ...+.||.|++|+||||.|+   ++++|    +|++...  .++...|.++|+++.. |+.+|.++++
T Consensus       152 --~~~~~fD~Vl~d~Pcs~~g~---~~~~p----~~~~~~~--~~~~~~~~~~l~~~~~~LkpgG~lv~s  210 (274)
T 3ajd_A          152 --KNEIFFDKILLDAPCSGNII---KDKNR----NVSEEDI--KYCSLRQKELIDIGIDLLKKDGELVYS  210 (274)
T ss_dssp             --HTTCCEEEEEEEECCC-------------------HHHH--TGGGTCHHHHHHHHHHHEEEEEEEEEE
T ss_pred             --hccccCCEEEEcCCCCCCcc---cccCC----CCCHHHH--HHHHHHHHHHHHHHHHhCCCCCEEEEE
Confidence              00246999999999999999   99997    5777654  5788899999999977 8999999993

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.39  E-value=1.1e-12  Score=124.76  Aligned_cols=83  Identities=19%  Similarity=0.172  Sum_probs=68.9

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .++||++|||+|||||++|.++|+.++++|+|+|+|+++.+++.+.+.+++.  .|+.++.+|++......         
T Consensus        73 ~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~~r--~nv~~i~~Da~~~~~~~---------  141 (232)
T 3id6_C           73 PIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQRR--PNIFPLLADARFPQSYK---------  141 (232)
T ss_dssp             SCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHHHC--TTEEEEECCTTCGGGTT---------
T ss_pred             CCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CCeEEEEcccccchhhh---------
Confidence            3889999999999999999999999988999999999999998877766653  68999999998643210         


Q ss_pred             cCCCCCCCCCceeecCC
Q 014571          338 CNSKDNNYITSQTSDSM  354 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaP  354 (422)
                         ...+.||.|++|++
T Consensus       142 ---~~~~~~D~I~~d~a  155 (232)
T 3id6_C          142 ---SVVENVDVLYVDIA  155 (232)
T ss_dssp             ---TTCCCEEEEEECCC
T ss_pred             ---ccccceEEEEecCC
Confidence               11356999999865

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=99.35  E-value=2.5e-12  Score=131.23  Aligned_cols=131  Identities=19%  Similarity=0.156  Sum_probs=104.4

Q ss_pred             cccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEE
Q 014571          238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY  317 (422)
Q Consensus       238 ~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~  317 (422)
                      ++.|.|+.|....+++...+  ++|++|||+|||+|++|.++|..   ...|+|+|+|+.+++.+++|++..|+.+ .+.
T Consensus       193 ~~tG~f~dqr~~r~~l~~~~--~~g~~VLDlg~GtG~~sl~~a~~---ga~V~avDis~~al~~a~~n~~~ng~~~-~~~  266 (393)
T 4dmg_A          193 QKTGYYLDQRENRRLFEAMV--RPGERVLDVYSYVGGFALRAARK---GAYALAVDKDLEALGVLDQAALRLGLRV-DIR  266 (393)
T ss_dssp             CTTSSCGGGHHHHHHHHTTC--CTTCEEEEESCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCCC-EEE
T ss_pred             cccCcCCCHHHHHHHHHHHh--cCCCeEEEcccchhHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHhCCCC-cEE
Confidence            46889999999988877664  47999999999999999999986   2449999999999999999999999873 566


Q ss_pred             ecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc
Q 014571          318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG  397 (422)
Q Consensus       318 ~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~  397 (422)
                      ++|+.......              .+.||.|++|+||-..+.                .  .+....+.+.++++.+..
T Consensus       267 ~~D~~~~l~~~--------------~~~fD~Ii~dpP~f~~~~----------------~--~~~~~~~~~~~ll~~a~~  314 (393)
T 4dmg_A          267 HGEALPTLRGL--------------EGPFHHVLLDPPTLVKRP----------------E--ELPAMKRHLVDLVREALR  314 (393)
T ss_dssp             ESCHHHHHHTC--------------CCCEEEEEECCCCCCSSG----------------G--GHHHHHHHHHHHHHHHHH
T ss_pred             EccHHHHHHHh--------------cCCCCEEEECCCcCCCCH----------------H--HHHHHHHHHHHHHHHHHH
Confidence            99998765321              123999999999943322                1  123566788899998866


Q ss_pred             -ceeccEEEe
Q 014571          398 -LRIQKVLVL  406 (422)
Q Consensus       398 -lr~~~~~~~  406 (422)
                       |+.+|.|++
T Consensus       315 ~LkpGG~Lv~  324 (393)
T 4dmg_A          315 LLAEEGFLWL  324 (393)
T ss_dssp             TEEEEEEEEE
T ss_pred             hcCCCCEEEE
Confidence             799999985

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.32  E-value=1.9e-11  Score=116.44  Aligned_cols=144  Identities=13%  Similarity=0.104  Sum_probs=101.0

Q ss_pred             cceEEEeChh-------HHHHHHhcCCC-CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC
Q 014571          240 EGEIFLQNLP-------SIVTAHALDPQ-KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL  311 (422)
Q Consensus       240 ~G~~~~Qd~~-------S~lv~~~L~p~-pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~  311 (422)
                      .+..+.|+..       |.+.+.++.++ ++.+|||+|||+|..+..+++..  .++|+|+|+++.+++.+++|++..|+
T Consensus        20 ~~~~i~q~~~~~~~~~d~~ll~~~~~~~~~~~~vLDlG~G~G~~~~~la~~~--~~~v~gvDi~~~~~~~a~~n~~~~~~   97 (259)
T 3lpm_A           20 ENLRIIQSPSVFSFSIDAVLLAKFSYLPIRKGKIIDLCSGNGIIPLLLSTRT--KAKIVGVEIQERLADMAKRSVAYNQL   97 (259)
T ss_dssp             TTEEEEEBTTTBCCCHHHHHHHHHCCCCSSCCEEEETTCTTTHHHHHHHTTC--CCEEEEECCSHHHHHHHHHHHHHTTC
T ss_pred             CCEEEEeCCCCccCcHHHHHHHHHhcCCCCCCEEEEcCCchhHHHHHHHHhc--CCcEEEEECCHHHHHHHHHHHHHCCC
Confidence            4455567666       89999999999 99999999999999999999884  34999999999999999999999998


Q ss_pred             c-ceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcccc-CchhhhhhCCCCCccccccCcccchhHHHHH
Q 014571          312 K-CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK-EVPSIAAEGLNGDKSCKEKGRTCGECGMAQE  389 (422)
Q Consensus       312 ~-nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~-G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~  389 (422)
                      . +++++++|+.......             ..+.||.|++|+|+... +.   -..+++........     .....-.
T Consensus        98 ~~~v~~~~~D~~~~~~~~-------------~~~~fD~Ii~npPy~~~~~~---~~~~~~~~~~~a~~-----~~~~~~~  156 (259)
T 3lpm_A           98 EDQIEIIEYDLKKITDLI-------------PKERADIVTCNPPYFATPDT---SLKNTNEHFRIARH-----EVMCTLE  156 (259)
T ss_dssp             TTTEEEECSCGGGGGGTS-------------CTTCEEEEEECCCC-------------------------------HHHH
T ss_pred             cccEEEEECcHHHhhhhh-------------ccCCccEEEECCCCCCCccc---cCCCCchHHHhhhc-----cccCCHH
Confidence            6 5999999998764311             13579999999999776 22   22333322111110     1112334


Q ss_pred             HHHHHhcc-ceeccEEEe
Q 014571          390 EINALVVG-LRIQKVLVL  406 (422)
Q Consensus       390 ~IL~~a~~-lr~~~~~~~  406 (422)
                      ++++.+.. |+.+|.+++
T Consensus       157 ~~l~~~~~~LkpgG~l~~  174 (259)
T 3lpm_A          157 DTIRVAASLLKQGGKANF  174 (259)
T ss_dssp             HHHHHHHHHEEEEEEEEE
T ss_pred             HHHHHHHHHccCCcEEEE
Confidence            67777755 899999988

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.27  E-value=2.4e-11  Score=116.87  Aligned_cols=146  Identities=18%  Similarity=0.137  Sum_probs=104.6

Q ss_pred             cceEEEeChhHHHHHHhcCC--CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEE
Q 014571          240 EGEIFLQNLPSIVTAHALDP--QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY  317 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p--~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~  317 (422)
                      .|.+..+.....++..+++.  .++.+|||+|||+|..+..++... +..+|+|+|+|+.+++.+++|+++.|++++.++
T Consensus        86 ~~~~ipr~~te~l~~~~l~~~~~~~~~vLDlG~GsG~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~v~~~  164 (276)
T 2b3t_A           86 PATLIPRPDTECLVEQALARLPEQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHIL  164 (276)
T ss_dssp             TTSCCCCTTHHHHHHHHHHHSCSSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEE
T ss_pred             CCCcccCchHHHHHHHHHHhcccCCCEEEEecCCccHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEE
Confidence            44445555556666555542  678899999999999999999876 457999999999999999999999999899999


Q ss_pred             ecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCccc--chhHHHHHHHHHHh
Q 014571          318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTC--GECGMAQEEINALV  395 (422)
Q Consensus       318 ~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~--~~l~~~Q~~IL~~a  395 (422)
                      ++|......                .+.||.|++++||.+.+. .++  .++.. .+.|...-.  ..-....+++++.+
T Consensus       165 ~~d~~~~~~----------------~~~fD~Iv~npPy~~~~~-~~l--~~~v~-~~~p~~al~~~~~g~~~~~~~l~~~  224 (276)
T 2b3t_A          165 QSDWFSALA----------------GQQFAMIVSNPPYIDEQD-PHL--QQGDV-RFEPLTALVAADSGMADIVHIIEQS  224 (276)
T ss_dssp             CCSTTGGGT----------------TCCEEEEEECCCCBCTTC-HHH--HSSGG-GSSCSTTTBCHHHHTHHHHHHHHHH
T ss_pred             Ecchhhhcc----------------cCCccEEEECCCCCCccc-ccc--Chhhh-hcCcHHHHcCCCcHHHHHHHHHHHH
Confidence            999875321                245999999999998754 111  22221 122211100  01123567888888


Q ss_pred             cc-ceeccEEEe
Q 014571          396 VG-LRIQKVLVL  406 (422)
Q Consensus       396 ~~-lr~~~~~~~  406 (422)
                      .. |+.+|.+++
T Consensus       225 ~~~LkpgG~l~~  236 (276)
T 2b3t_A          225 RNALVSGGFLLL  236 (276)
T ss_dssp             GGGEEEEEEEEE
T ss_pred             HHhcCCCCEEEE
Confidence            66 899999998

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=99.26  E-value=6.5e-12  Score=127.09  Aligned_cols=133  Identities=24%  Similarity=0.239  Sum_probs=104.8

Q ss_pred             ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEe
Q 014571          239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK  318 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~  318 (422)
                      +.|.|+.|....++++.+    +|++|||+|||+|+.+.++|..   ..+|+++|+++..++.+++|++..|+.++++++
T Consensus       191 ~~g~f~~~~~~~~~~~~~----~~~~VLDlg~G~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~n~~~n~~~~~~~~~  263 (382)
T 1wxx_A          191 KTGAYLDQRENRLYMERF----RGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLE  263 (382)
T ss_dssp             CCCCCGGGHHHHHHGGGC----CEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred             cCccccchHHHHHHHHhc----CCCeEEEeeeccCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCCceEEE
Confidence            568777777766655443    7899999999999999999987   479999999999999999999999998899999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-  397 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-  397 (422)
                      +|+........           .....||.|++|||+.+...                ..  +......+.+++..+.. 
T Consensus       264 ~d~~~~~~~~~-----------~~~~~fD~Ii~dpP~~~~~~----------------~~--~~~~~~~~~~~l~~~~~~  314 (382)
T 1wxx_A          264 ANAFDLLRRLE-----------KEGERFDLVVLDPPAFAKGK----------------KD--VERAYRAYKEVNLRAIKL  314 (382)
T ss_dssp             SCHHHHHHHHH-----------HTTCCEEEEEECCCCSCCST----------------TS--HHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHH-----------hcCCCeeEEEECCCCCCCCh----------------hH--HHHHHHHHHHHHHHHHHh
Confidence            99987643210           01346999999999865433                01  13456678888888865 


Q ss_pred             ceeccEEEeh
Q 014571          398 LRIQKVLVLT  407 (422)
Q Consensus       398 lr~~~~~~~t  407 (422)
                      |+.+|.++++
T Consensus       315 LkpgG~l~~~  324 (382)
T 1wxx_A          315 LKEGGILATA  324 (382)
T ss_dssp             EEEEEEEEEE
T ss_pred             cCCCCEEEEE
Confidence            8999999883

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=99.24  E-value=1.8e-11  Score=133.40  Aligned_cols=135  Identities=13%  Similarity=0.082  Sum_probs=105.9

Q ss_pred             ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc--ceEE
Q 014571          239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK--CITT  316 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~--nv~~  316 (422)
                      +.|.|+-|....+++....   +|.+|||+|||+|+.|.+++..  +..+|+++|+|+.+++.+++|++..|+.  ++++
T Consensus       520 ~tG~f~d~r~~r~~l~~~~---~g~~VLDlg~GtG~~sl~aa~~--ga~~V~aVD~s~~al~~a~~N~~~ngl~~~~v~~  594 (703)
T 3v97_A          520 DTGLFLDHRIARRMLGQMS---KGKDFLNLFSYTGSATVHAGLG--GARSTTTVDMSRTYLEWAERNLRLNGLTGRAHRL  594 (703)
T ss_dssp             SCSCCGGGHHHHHHHHHHC---TTCEEEEESCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCSTTEEE
T ss_pred             cCCCcccHHHHHHHHHHhc---CCCcEEEeeechhHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEE
Confidence            6788888888877777654   6899999999999999999874  4468999999999999999999999986  7999


Q ss_pred             EecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhc
Q 014571          317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVV  396 (422)
Q Consensus       317 ~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~  396 (422)
                      +++|+.++....              .+.||.|++||||.+.+.     +..+         .  ....+.+.+|++.+.
T Consensus       595 i~~D~~~~l~~~--------------~~~fD~Ii~DPP~f~~~~-----~~~~---------~--~~~~~~~~~ll~~a~  644 (703)
T 3v97_A          595 IQADCLAWLREA--------------NEQFDLIFIDPPTFSNSK-----RMED---------A--FDVQRDHLALMKDLK  644 (703)
T ss_dssp             EESCHHHHHHHC--------------CCCEEEEEECCCSBC---------------------C--CBHHHHHHHHHHHHH
T ss_pred             EecCHHHHHHhc--------------CCCccEEEECCccccCCc-----cchh---------H--HHHHHHHHHHHHHHH
Confidence            999998864321              356999999999977554     0111         1  135567888998886


Q ss_pred             c-ceeccEEEehh
Q 014571          397 G-LRIQKVLVLTA  408 (422)
Q Consensus       397 ~-lr~~~~~~~t~  408 (422)
                      . |+.+|.|+++.
T Consensus       645 ~~LkpgG~L~~s~  657 (703)
T 3v97_A          645 RLLRAGGTIMFSN  657 (703)
T ss_dssp             HHEEEEEEEEEEE
T ss_pred             HhcCCCcEEEEEE
Confidence            6 89999999844

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=99.24  E-value=2.1e-11  Score=121.61  Aligned_cols=137  Identities=15%  Similarity=0.068  Sum_probs=102.8

Q ss_pred             ccceEEEeChhHHHHHHhcC-CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc--eE
Q 014571          239 LEGEIFLQNLPSIVTAHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC--IT  315 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~-p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n--v~  315 (422)
                      +.|.+.-|......+...+. ..+|.+|||+|||+|+.+..++..  + .+|+++|+|+.+++.+++|++..|+.+  ++
T Consensus       130 ~tg~f~dq~~~~~~l~~~~~~~~~~~~VLDlgcGtG~~sl~la~~--g-a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~  206 (332)
T 2igt_A          130 HVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA--G-AEVTHVDASKKAIGWAKENQVLAGLEQAPIR  206 (332)
T ss_dssp             CCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT--T-CEEEEECSCHHHHHHHHHHHHHHTCTTSCEE
T ss_pred             cceechHHHHHHHHHHHHHHhcCCCCcEEEcccccCHHHHHHHHc--C-CEEEEEECCHHHHHHHHHHHHHcCCCccceE
Confidence            56777777766666666654 567889999999999999999985  2 399999999999999999999999875  99


Q ss_pred             EEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHh
Q 014571          316 TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALV  395 (422)
Q Consensus       316 ~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a  395 (422)
                      ++++|+.++.....           .....||.|++|+||.+.+.      ..+         .  ......+.++++.+
T Consensus       207 ~i~~D~~~~l~~~~-----------~~~~~fD~Ii~dPP~~~~~~------~~~---------~--~~~~~~~~~ll~~~  258 (332)
T 2igt_A          207 WICEDAMKFIQREE-----------RRGSTYDIILTDPPKFGRGT------HGE---------V--WQLFDHLPLMLDIC  258 (332)
T ss_dssp             EECSCHHHHHHHHH-----------HHTCCBSEEEECCCSEEECT------TCC---------E--EEHHHHHHHHHHHH
T ss_pred             EEECcHHHHHHHHH-----------hcCCCceEEEECCccccCCc------hHH---------H--HHHHHHHHHHHHHH
Confidence            99999987643210           00246999999999987664      000         0  12344556778777


Q ss_pred             cc-ceeccEEEe
Q 014571          396 VG-LRIQKVLVL  406 (422)
Q Consensus       396 ~~-lr~~~~~~~  406 (422)
                      .. |+.+|.+++
T Consensus       259 ~~~LkpgG~lli  270 (332)
T 2igt_A          259 REILSPKALGLV  270 (332)
T ss_dssp             HHTBCTTCCEEE
T ss_pred             HHhcCcCcEEEE
Confidence            54 788888666

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=99.23  E-value=1.7e-11  Score=124.51  Aligned_cols=135  Identities=17%  Similarity=0.116  Sum_probs=103.2

Q ss_pred             cccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-c-ceE
Q 014571          238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-K-CIT  315 (422)
Q Consensus       238 ~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~-nv~  315 (422)
                      .+.|.|..|....+++...   .+|++|||+|||+|+.+.++|..  +..+|+++|+++..++.+++|++..|+ + +++
T Consensus       200 ~~tgff~~~~~~~~~l~~~---~~~~~VLDl~cG~G~~sl~la~~--g~~~V~~vD~s~~al~~a~~n~~~ngl~~~~v~  274 (396)
T 3c0k_A          200 HKTGYYLDQRDSRLATRRY---VENKRVLNCFSYTGGFAVSALMG--GCSQVVSVDTSQEALDIARQNVELNKLDLSKAE  274 (396)
T ss_dssp             STTSSCGGGHHHHHHHHHH---CTTCEEEEESCTTCSHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCGGGEE
T ss_pred             ccCCcCcCHHHHHHHHHHh---hCCCeEEEeeccCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCccceE
Confidence            3568887888777777766   58899999999999999999986  246999999999999999999999999 7 899


Q ss_pred             EEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHh
Q 014571          316 TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALV  395 (422)
Q Consensus       316 ~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a  395 (422)
                      ++++|+........           .....||.|++|+|+.+...        ..   +       ......+.+++..+
T Consensus       275 ~~~~D~~~~~~~~~-----------~~~~~fD~Ii~dpP~~~~~~--------~~---~-------~~~~~~~~~~l~~~  325 (396)
T 3c0k_A          275 FVRDDVFKLLRTYR-----------DRGEKFDVIVMDPPKFVENK--------SQ---L-------MGACRGYKDINMLA  325 (396)
T ss_dssp             EEESCHHHHHHHHH-----------HTTCCEEEEEECCSSTTTCS--------SS---S-------SCCCTHHHHHHHHH
T ss_pred             EEECCHHHHHHHHH-----------hcCCCCCEEEECCCCCCCCh--------hH---H-------HHHHHHHHHHHHHH
Confidence            99999987643210           00246999999999866433        11   1       11223466777766


Q ss_pred             cc-ceeccEEEe
Q 014571          396 VG-LRIQKVLVL  406 (422)
Q Consensus       396 ~~-lr~~~~~~~  406 (422)
                      .. ++.+|++++
T Consensus       326 ~~~LkpgG~l~~  337 (396)
T 3c0k_A          326 IQLLNEGGILLT  337 (396)
T ss_dssp             HHTEEEEEEEEE
T ss_pred             HHhcCCCcEEEE
Confidence            54 799999887

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=99.21  E-value=3.4e-11  Score=122.16  Aligned_cols=135  Identities=18%  Similarity=0.162  Sum_probs=103.7

Q ss_pred             ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEE
Q 014571          239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTY  317 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~  317 (422)
                      +.|.|+-|....+++..++  ++|++|||+|||+|+.|.++|..  +.++|+++|+++..++.+++|++..|+. +++++
T Consensus       197 ~tg~f~~~~~~~~~~~~~~--~~~~~VLDl~~G~G~~~~~la~~--g~~~v~~vD~s~~~l~~a~~n~~~n~~~~~v~~~  272 (396)
T 2as0_A          197 KTGFFLDQRENRLALEKWV--QPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI  272 (396)
T ss_dssp             SSCCCSTTHHHHHHHGGGC--CTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             ccCccCCHHHHHHHHHHHh--hCCCeEEEecCCCCHHHHHHHHC--CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEE
Confidence            5677766766666666553  58999999999999999999986  3469999999999999999999999997 89999


Q ss_pred             ecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc
Q 014571          318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG  397 (422)
Q Consensus       318 ~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~  397 (422)
                      ++|+........           .....||.|++|+|+.+...                ..  +......+.+++..+..
T Consensus       273 ~~d~~~~~~~~~-----------~~~~~fD~Vi~dpP~~~~~~----------------~~--~~~~~~~~~~~l~~~~~  323 (396)
T 2as0_A          273 VGSAFEEMEKLQ-----------KKGEKFDIVVLDPPAFVQHE----------------KD--LKAGLRAYFNVNFAGLN  323 (396)
T ss_dssp             ESCHHHHHHHHH-----------HTTCCEEEEEECCCCSCSSG----------------GG--HHHHHHHHHHHHHHHHT
T ss_pred             ECCHHHHHHHHH-----------hhCCCCCEEEECCCCCCCCH----------------HH--HHHHHHHHHHHHHHHHH
Confidence            999987643210           01246999999999765432                01  12444567788888765


Q ss_pred             -ceeccEEEe
Q 014571          398 -LRIQKVLVL  406 (422)
Q Consensus       398 -lr~~~~~~~  406 (422)
                       ++.+|.+++
T Consensus       324 ~LkpgG~lv~  333 (396)
T 2as0_A          324 LVKDGGILVT  333 (396)
T ss_dssp             TEEEEEEEEE
T ss_pred             hcCCCcEEEE
Confidence             899998887

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.20  E-value=1.2e-10  Score=108.02  Aligned_cols=103  Identities=13%  Similarity=0.119  Sum_probs=84.0

Q ss_pred             EEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchh
Q 014571          244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDAL  322 (422)
Q Consensus       244 ~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~  322 (422)
                      .+++..+++...++...++.+|||+|||+|..|.++|+.+++.++|+++|+++.+++.+++++++.|+. +|+++.+|+.
T Consensus        41 ~~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~  120 (221)
T 3u81_A           41 NVGDAKGQIMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQ  120 (221)
T ss_dssp             GCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHH
T ss_pred             ccCHHHHHHHHHHHHhcCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHH
Confidence            456667778888887788999999999999999999998876789999999999999999999999986 5999999998


Q ss_pred             hhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          323 KAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      .........         ...+.||.|++|+++
T Consensus       121 ~~l~~~~~~---------~~~~~fD~V~~d~~~  144 (221)
T 3u81_A          121 DLIPQLKKK---------YDVDTLDMVFLDHWK  144 (221)
T ss_dssp             HHGGGTTTT---------SCCCCCSEEEECSCG
T ss_pred             HHHHHHHHh---------cCCCceEEEEEcCCc
Confidence            754322100         012579999998644

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.19  E-value=4.9e-11  Score=122.79  Aligned_cols=140  Identities=21%  Similarity=0.200  Sum_probs=100.2

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      ...+++.++++|||+|||+|..+..+|+.   .++|+|+|+++..++.+++|++..|++|++++++|+.......   + 
T Consensus       279 ~~~l~~~~~~~VLDlgcG~G~~~~~la~~---~~~V~gvD~s~~al~~A~~n~~~~~~~~v~f~~~d~~~~l~~~---~-  351 (433)
T 1uwv_A          279 LEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQ---P-  351 (433)
T ss_dssp             HHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSS---G-
T ss_pred             HHhhcCCCCCEEEECCCCCCHHHHHHHhh---CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEECCHHHHhhhh---h-
Confidence            34567788999999999999999999987   4799999999999999999999999999999999987642110   0 


Q ss_pred             CccccCCCCCCCCCceeecCCccccCch-hhhhhCCCCCccccccCcccchhHH--HHH--HHHHHhccceeccEEEe--
Q 014571          334 EPNMCNSKDNNYITSQTSDSMKLHKEVP-SIAAEGLNGDKSCKEKGRTCGECGM--AQE--EINALVVGLRIQKVLVL--  406 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~l-~~lrr~p~~~~~w~~~~~~~~~l~~--~Q~--~IL~~a~~lr~~~~~~~--  406 (422)
                             ...+.||.|++|+|++|...+ ..+.+       ..+....+.+|.+  +.+  .+|. ..|+++..+-.+  
T Consensus       352 -------~~~~~fD~Vv~dPPr~g~~~~~~~l~~-------~~p~~ivyvsc~p~tlard~~~l~-~~Gy~~~~~~~~d~  416 (433)
T 1uwv_A          352 -------WAKNGFDKVLLDPARAGAAGVMQQIIK-------LEPIRIVYVSCNPATLARDSEALL-KAGYTIARLAMLDM  416 (433)
T ss_dssp             -------GGTTCCSEEEECCCTTCCHHHHHHHHH-------HCCSEEEEEESCHHHHHHHHHHHH-HTTCEEEEEEEECC
T ss_pred             -------hhcCCCCEEEECCCCccHHHHHHHHHh-------cCCCeEEEEECChHHHHhhHHHHH-HCCcEEEEEEEecc
Confidence                   013469999999999987652 33332       1222221112221  222  2332 247888887766  


Q ss_pred             ---hhhHHHHHh
Q 014571          407 ---TALIESFLM  415 (422)
Q Consensus       407 ---t~~~~~~~~  415 (422)
                         |.|+|++..
T Consensus       417 Fp~t~HvE~v~l  428 (433)
T 1uwv_A          417 FPHTGHLESMVL  428 (433)
T ss_dssp             STTSSCCEEEEE
T ss_pred             CCCCCeEEEEEE
Confidence               999998643

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=99.17  E-value=6e-11  Score=119.49  Aligned_cols=149  Identities=9%  Similarity=0.037  Sum_probs=96.7

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC-
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND-  333 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~-  333 (422)
                      ..+++. |++|||+|||+|+.|+.+|..   ..+|+|+|+++..++.+++|++..|++|++++.+|+.+.......... 
T Consensus       208 ~~~~~~-~~~vLDl~cG~G~~~l~la~~---~~~V~gvd~~~~ai~~a~~n~~~ng~~~v~~~~~d~~~~~~~~~~~~~~  283 (369)
T 3bt7_A          208 DVTKGS-KGDLLELYCGNGNFSLALARN---FDRVLATEIAKPSVAAAQYNIAANHIDNVQIIRMAAEEFTQAMNGVREF  283 (369)
T ss_dssp             HHTTTC-CSEEEEESCTTSHHHHHHGGG---SSEEEEECCCHHHHHHHHHHHHHTTCCSEEEECCCSHHHHHHHSSCCCC
T ss_pred             HHhhcC-CCEEEEccCCCCHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHhhcccc
Confidence            334444 689999999999999999875   368999999999999999999999999999999999876432211000 


Q ss_pred             C-ccccCCCCCCCCCceeecCCccccCc--hhhhhhCCCCCccccccCcccchhHHHHHHHHHHhccceeccEEEe----
Q 014571          334 E-PNMCNSKDNNYITSQTSDSMKLHKEV--PSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLVL----  406 (422)
Q Consensus       334 ~-~~~~~~~~~~~FD~VLvDaPCSg~G~--l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~lr~~~~~~~----  406 (422)
                      . +. ........||.|++|||+.|...  +..++ .+.....-+-+..   .++ .-.+.|.  .++++..+-.+    
T Consensus       284 ~~l~-~~~~~~~~fD~Vv~dPPr~g~~~~~~~~l~-~~g~ivyvsc~p~---t~a-rd~~~l~--~~y~~~~~~~~D~FP  355 (369)
T 3bt7_A          284 NRLQ-GIDLKSYQCETIFVDPPRSGLDSETEKMVQ-AYPRILYISCNPE---TLC-KNLETLS--QTHKVERLALFDQFP  355 (369)
T ss_dssp             TTGG-GSCGGGCCEEEEEECCCTTCCCHHHHHHHT-TSSEEEEEESCHH---HHH-HHHHHHH--HHEEEEEEEEECCST
T ss_pred             cccc-ccccccCCCCEEEECcCccccHHHHHHHHh-CCCEEEEEECCHH---HHH-HHHHHHh--hCcEEEEEEeeccCC
Confidence            0 00 00000136999999999997643  33333 3322111111100   111 1223333  36888777777    


Q ss_pred             -hhhHHHHHh
Q 014571          407 -TALIESFLM  415 (422)
Q Consensus       407 -t~~~~~~~~  415 (422)
                       |.|+|++..
T Consensus       356 ~T~HvE~v~l  365 (369)
T 3bt7_A          356 YTHHMQCGVL  365 (369)
T ss_dssp             TSSCCEEEEE
T ss_pred             CCCcEEEEEE
Confidence             999998643

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.16  E-value=1.9e-10  Score=114.76  Aligned_cols=122  Identities=17%  Similarity=0.052  Sum_probs=98.0

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      ......+.++++.+|||+|||+|+.+..+|...++...|+++|+++.+++.+++|+++.|+.++++.++|+..++..   
T Consensus       193 ~~l~~~~~~~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~g~~~i~~~~~D~~~~~~~---  269 (354)
T 3tma_A          193 QALLRLADARPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALASGLSWIRFLRADARHLPRF---  269 (354)
T ss_dssp             HHHHHHTTCCTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHTTCTTCEEEECCGGGGGGT---
T ss_pred             HHHHHHhCCCCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHcCCCceEEEeCChhhCccc---
Confidence            34456678889999999999999999999998645689999999999999999999999998999999999886432   


Q ss_pred             CCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                                  ...||.|++|+|+.- .              +.  ..  ..+..++.++++.+.. |+.+|.+++
T Consensus       270 ------------~~~~D~Ii~npPyg~-r--------------~~--~~--~~~~~~~~~~~~~~~~~LkpgG~l~i  315 (354)
T 3tma_A          270 ------------FPEVDRILANPPHGL-R--------------LG--RK--EGLFHLYWDFLRGALALLPPGGRVAL  315 (354)
T ss_dssp             ------------CCCCSEEEECCCSCC---------------------C--HHHHHHHHHHHHHHHHTSCTTCEEEE
T ss_pred             ------------cCCCCEEEECCCCcC-c--------------cC--Cc--ccHHHHHHHHHHHHHHhcCCCcEEEE
Confidence                        234899999999831 0              11  11  2567788899988865 788888877

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=99.16  E-value=6.9e-11  Score=119.94  Aligned_cols=135  Identities=9%  Similarity=-0.008  Sum_probs=100.0

Q ss_pred             ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc--ceEE
Q 014571          239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK--CITT  316 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~--nv~~  316 (422)
                      +.|.|.-|.....+....+  .+|++|||+|||+|+.+.++|..  +..+|+++|+++.+++.+++|++..|+.  ++++
T Consensus       192 ~t~ff~~~~~~~~~~~~~~--~~~~~VLDl~cGtG~~sl~la~~--ga~~V~~vD~s~~al~~A~~N~~~n~~~~~~v~~  267 (385)
T 2b78_A          192 MTGIFLDQRQVRNELINGS--AAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQL  267 (385)
T ss_dssp             CCSSCGGGHHHHHHHHHTT--TBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEE
T ss_pred             cCCcCCcHHHHHHHHHHHh--cCCCeEEEEeeccCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCccceEE
Confidence            4566645555555665554  67899999999999999999985  2358999999999999999999999997  8999


Q ss_pred             EecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhc
Q 014571          317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVV  396 (422)
Q Consensus       317 ~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~  396 (422)
                      +++|+.+......           .....||.|++|||+.+.+.      .      +      ..+..+...++++.+.
T Consensus       268 ~~~D~~~~l~~~~-----------~~~~~fD~Ii~DPP~~~~~~------~------~------~~~~~~~~~~ll~~~~  318 (385)
T 2b78_A          268 VVMDVFDYFKYAR-----------RHHLTYDIIIIDPPSFARNK------K------E------VFSVSKDYHKLIRQGL  318 (385)
T ss_dssp             EESCHHHHHHHHH-----------HTTCCEEEEEECCCCC-----------------C------CCCHHHHHHHHHHHHH
T ss_pred             EECCHHHHHHHHH-----------HhCCCccEEEECCCCCCCCh------h------h------HHHHHHHHHHHHHHHH
Confidence            9999987543211           01246999999999975432      0      0      1234456677888775


Q ss_pred             c-ceeccEEEe
Q 014571          397 G-LRIQKVLVL  406 (422)
Q Consensus       397 ~-lr~~~~~~~  406 (422)
                      . ++.+|.+++
T Consensus       319 ~~L~pgG~l~~  329 (385)
T 2b78_A          319 EILSENGLIIA  329 (385)
T ss_dssp             HTEEEEEEEEE
T ss_pred             HhcCCCcEEEE
Confidence            4 899999888

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.16  E-value=1.1e-10  Score=109.23  Aligned_cols=93  Identities=16%  Similarity=0.042  Sum_probs=80.7

Q ss_pred             hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhc
Q 014571          249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRR  327 (422)
Q Consensus       249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~  327 (422)
                      ...++..+....+|.+|||+|||+|+.+..+++.   .++|+|+|+++.+++.+++++++.|+ .++.++++|+..... 
T Consensus        66 ~~~l~~~~~~~~~~~~vLD~gcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~-  141 (241)
T 3gdh_A           66 AEHIAGRVSQSFKCDVVVDAFCGVGGNTIQFALT---GMRVIAIDIDPVKIALARNNAEVYGIADKIEFICGDFLLLAS-  141 (241)
T ss_dssp             HHHHHHHHHHHSCCSEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHGG-
T ss_pred             HHHHHHHhhhccCCCEEEECccccCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCCcCeEEEECChHHhcc-
Confidence            5555666666668999999999999999999986   37999999999999999999999998 689999999987641 


Q ss_pred             cCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571          328 KNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                                     .+.||.|++|+||.+.+.
T Consensus       142 ---------------~~~~D~v~~~~~~~~~~~  159 (241)
T 3gdh_A          142 ---------------FLKADVVFLSPPWGGPDY  159 (241)
T ss_dssp             ---------------GCCCSEEEECCCCSSGGG
T ss_pred             ---------------cCCCCEEEECCCcCCcch
Confidence                           246999999999999777

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=99.14  E-value=8.4e-11  Score=119.32  Aligned_cols=82  Identities=20%  Similarity=0.117  Sum_probs=71.8

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh---------------CCcceEEEecchhhhh
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM---------------GLKCITTYKLDALKAV  325 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~---------------g~~nv~~~~~Da~~~~  325 (422)
                      +|.+|||+|||+|.+++++|..++ ..+|+++|+++..++.+++|+++.               |+.+++++++|+..+.
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~-~~~V~avDi~~~av~~a~~N~~~n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~~  125 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  125 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHhcccccccccccccccCCCceEEEcCcHHHHH
Confidence            789999999999999999999865 357999999999999999999999               8888999999998865


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCCccc
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                      ...              ...||.|++||||+.
T Consensus       126 ~~~--------------~~~fD~I~lDP~~~~  143 (378)
T 2dul_A          126 AER--------------HRYFHFIDLDPFGSP  143 (378)
T ss_dssp             HHS--------------TTCEEEEEECCSSCC
T ss_pred             Hhc--------------cCCCCEEEeCCCCCH
Confidence            321              246999999999863

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=99.14  E-value=1.3e-10  Score=107.46  Aligned_cols=102  Identities=16%  Similarity=0.084  Sum_probs=82.5

Q ss_pred             EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhh
Q 014571          245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK  323 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~  323 (422)
                      ++...+++...++...++.+|||+|||+|..|.++++.+++.++|+++|+++.+++.+++++++.|+.+ ++++.+|+..
T Consensus        42 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  121 (223)
T 3duw_A           42 VSPTQGKFLQLLVQIQGARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERANLNDRVEVRTGLALD  121 (223)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            345666677777677789999999999999999999998767899999999999999999999999965 9999999987


Q ss_pred             hhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      .......          ...+.||.|++|+++.
T Consensus       122 ~~~~~~~----------~~~~~fD~v~~d~~~~  144 (223)
T 3duw_A          122 SLQQIEN----------EKYEPFDFIFIDADKQ  144 (223)
T ss_dssp             HHHHHHH----------TTCCCCSEEEECSCGG
T ss_pred             HHHHHHh----------cCCCCcCEEEEcCCcH
Confidence            5432110          0014699999998744

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.13  E-value=9.9e-11  Score=109.22  Aligned_cols=104  Identities=21%  Similarity=0.191  Sum_probs=87.1

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEe
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYK  318 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~  318 (422)
                      .|..++|...+.++..++.+.++.+|||+|||+|..+..+++.++ .++|+++|+++.+++.+++++++.|+. ++.++.
T Consensus        33 ~~~~~~~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~la~~~~-~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~  111 (233)
T 2gpy_A           33 QQVPIMDLLGMESLLHLLKMAAPARILEIGTAIGYSAIRMAQALP-EATIVSIERDERRYEEAHKHVKALGLESRIELLF  111 (233)
T ss_dssp             TTCCCCCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHCT-TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEEC
T ss_pred             cCCCCcCHHHHHHHHHHHhccCCCEEEEecCCCcHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEE
Confidence            456677888888888888888999999999999999999999874 589999999999999999999999985 599999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      +|+........            ..+.||.|++|++|+
T Consensus       112 ~d~~~~~~~~~------------~~~~fD~I~~~~~~~  137 (233)
T 2gpy_A          112 GDALQLGEKLE------------LYPLFDVLFIDAAKG  137 (233)
T ss_dssp             SCGGGSHHHHT------------TSCCEEEEEEEGGGS
T ss_pred             CCHHHHHHhcc------------cCCCccEEEECCCHH
Confidence            99876432110            024699999988864

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.10  E-value=5.8e-10  Score=100.88  Aligned_cols=119  Identities=13%  Similarity=0.139  Sum_probs=91.0

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCc
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      ..+++|.+|||+|||+|..+..+++.+++.++|+++|+++.+++.++++++..|+ .+++++++|+..+...        
T Consensus        18 ~~~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~--------   89 (197)
T 3eey_A           18 MFVKEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDLNLIDRVTLIKDGHQNMDKY--------   89 (197)
T ss_dssp             HHCCTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHTTCGGGEEEECSCGGGGGGT--------
T ss_pred             hcCCCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHhhh--------
Confidence            3567899999999999999999999887678999999999999999999999998 7899999998775421        


Q ss_pred             cccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                            ..+.||.|++|.|---.+.           . +..      .....+.++++.+.. |+.+|.++++
T Consensus        90 ------~~~~fD~v~~~~~~~~~~~-----------~-~~~------~~~~~~~~~l~~~~~~Lk~gG~l~~~  138 (197)
T 3eey_A           90 ------IDCPVKAVMFNLGYLPSGD-----------H-SIS------TRPETTIQALSKAMELLVTGGIITVV  138 (197)
T ss_dssp             ------CCSCEEEEEEEESBCTTSC-----------T-TCB------CCHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------ccCCceEEEEcCCcccCcc-----------c-ccc------cCcccHHHHHHHHHHhCcCCCEEEEE
Confidence                  1356999999876611111           0 110      112244557777765 8999999874

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.09  E-value=7.7e-10  Score=102.48  Aligned_cols=125  Identities=8%  Similarity=-0.085  Sum_probs=87.6

Q ss_pred             cCCCCCCeEEEecCC-CChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571          257 LDPQKGERILDMCAA-PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       257 L~p~pg~~VLD~CAg-pGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      ..+++|.+|||+||| +|..+..+++..  .++|+++|+++.+++.+++++++.|+ +++++++|+.....      .  
T Consensus        51 ~~~~~~~~vLDlG~G~~G~~~~~la~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~~------~--  119 (230)
T 3evz_A           51 TFLRGGEVALEIGTGHTAMMALMAEKFF--NCKVTATEVDEEFFEYARRNIERNNS-NVRLVKSNGGIIKG------V--  119 (230)
T ss_dssp             TTCCSSCEEEEECCTTTCHHHHHHHHHH--CCEEEEEECCHHHHHHHHHHHHHTTC-CCEEEECSSCSSTT------T--
T ss_pred             hhcCCCCEEEEcCCCHHHHHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEeCCchhhhh------c--
Confidence            346789999999999 999999999875  57999999999999999999999998 89999999753211      0  


Q ss_pred             cccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          336 NMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                            ..+.||.|++|+|+...+.   -..... ...|......   . ..-.++++.+.. |+.+|.+++
T Consensus       120 ------~~~~fD~I~~npp~~~~~~---~~~~~~-~~~~~~~~~~---~-~~~~~~l~~~~~~LkpgG~l~~  177 (230)
T 3evz_A          120 ------VEGTFDVIFSAPPYYDKPL---GRVLTE-REAIGGGKYG---E-EFSVKLLEEAFDHLNPGGKVAL  177 (230)
T ss_dssp             ------CCSCEEEEEECCCCC-------------------CCSSS---C-HHHHHHHHHHGGGEEEEEEEEE
T ss_pred             ------ccCceeEEEECCCCcCCcc---ccccCh-hhhhccCccc---h-HHHHHHHHHHHHHhCCCeEEEE
Confidence                  1357999999999988766   222111 1234332221   1 122567777766 899999987

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=99.09  E-value=1.5e-10  Score=118.12  Aligned_cols=83  Identities=11%  Similarity=-0.050  Sum_probs=72.8

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc--eEEEecchhhhhh-ccCCCCCCcc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC--ITTYKLDALKAVR-RKNESNDEPN  336 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n--v~~~~~Da~~~~~-~~~~~~~~~~  336 (422)
                      ++|++|||+|||+|++++++|..+++.++|+++|+++..++.+++|++..|+.+  ++++++|+..+.. ..        
T Consensus        51 ~~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~--------  122 (392)
T 3axs_A           51 GRPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW--------  122 (392)
T ss_dssp             CSCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC--------
T ss_pred             CCCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh--------
Confidence            679999999999999999999986555799999999999999999999999976  9999999988653 21        


Q ss_pred             ccCCCCCCCCCceeecCCcc
Q 014571          337 MCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPCS  356 (422)
                            ...||.|++||+|+
T Consensus       123 ------~~~fD~V~lDP~g~  136 (392)
T 3axs_A          123 ------GFGFDYVDLDPFGT  136 (392)
T ss_dssp             ------SSCEEEEEECCSSC
T ss_pred             ------CCCCcEEEECCCcC
Confidence                  24699999999765

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=99.08  E-value=9.8e-10  Score=105.46  Aligned_cols=96  Identities=18%  Similarity=0.243  Sum_probs=80.3

Q ss_pred             EEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecch
Q 014571          243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDA  321 (422)
Q Consensus       243 ~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da  321 (422)
                      ++.++.  ..++..+++.+|.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.|+ .++.++.+|.
T Consensus        96 ~~~~~~--~~i~~~~~~~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~  173 (277)
T 1o54_A           96 VYPKDS--SFIAMMLDVKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDI  173 (277)
T ss_dssp             CCHHHH--HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCG
T ss_pred             cCHHHH--HHHHHHhCCCCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCH
Confidence            344444  3556678899999999999999999999999877678999999999999999999999998 6899999998


Q ss_pred             hhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          322 LKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      ....      +          .+.||.|++|+|+.
T Consensus       174 ~~~~------~----------~~~~D~V~~~~~~~  192 (277)
T 1o54_A          174 SEGF------D----------EKDVDALFLDVPDP  192 (277)
T ss_dssp             GGCC------S----------CCSEEEEEECCSCG
T ss_pred             HHcc------c----------CCccCEEEECCcCH
Confidence            7541      0          24589999998865

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.08  E-value=2.3e-10  Score=108.90  Aligned_cols=88  Identities=16%  Similarity=0.215  Sum_probs=74.6

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      |.++||++|||++||+|..|.++|+.++++|+|+|+|+++.+++.+++++++.  .|+..+.+|++.+....        
T Consensus        73 l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a~~~--~ni~~V~~d~~~p~~~~--------  142 (233)
T 4df3_A           73 LPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVVRDR--RNIFPILGDARFPEKYR--------  142 (233)
T ss_dssp             CCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHSTTC--TTEEEEESCTTCGGGGT--------
T ss_pred             cCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhhHhh--cCeeEEEEeccCccccc--------
Confidence            56899999999999999999999999999999999999999999999988764  58999999987653211        


Q ss_pred             ccCCCCCCCCCceeecCCcccc
Q 014571          337 MCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                          ...+.||.|++|.+....
T Consensus       143 ----~~~~~vDvVf~d~~~~~~  160 (233)
T 4df3_A          143 ----HLVEGVDGLYADVAQPEQ  160 (233)
T ss_dssp             ----TTCCCEEEEEECCCCTTH
T ss_pred             ----cccceEEEEEEeccCChh
Confidence                123568999999887764

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=99.08  E-value=2e-10  Score=118.17  Aligned_cols=134  Identities=13%  Similarity=0.080  Sum_probs=97.1

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      +...++++.++++|||+|||+|..+..+|+.   ..+|+|+|+++.+++.+++|++..|++ ++++++|+.....     
T Consensus       281 l~~~~~~~~~~~~VLDlgcG~G~~sl~la~~---~~~V~gvD~s~~ai~~A~~n~~~ngl~-v~~~~~d~~~~~~-----  351 (425)
T 2jjq_A          281 LVRKVSELVEGEKILDMYSGVGTFGIYLAKR---GFNVKGFDSNEFAIEMARRNVEINNVD-AEFEVASDREVSV-----  351 (425)
T ss_dssp             HHHHHHHHCCSSEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCC-EEEEECCTTTCCC-----
T ss_pred             HHHHhhccCCCCEEEEeeccchHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChHHcCc-----
Confidence            3333434678999999999999999999986   358999999999999999999999998 9999999876421     


Q ss_pred             CCCccccCCCCCCCCCceeecCCccccCc--hhhhhhCCCCCccccccCcccchhH-H-HHHHHHHHhccceeccEEEe-
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHKEV--PSIAAEGLNGDKSCKEKGRTCGECG-M-AQEEINALVVGLRIQKVLVL-  406 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G~--l~~lrr~p~~~~~w~~~~~~~~~l~-~-~Q~~IL~~a~~lr~~~~~~~-  406 (422)
                                  ..||.|++|+|++|...  ++.+++       ..+.+.-+-+|. . +.+++ +... +++..+-.+ 
T Consensus       352 ------------~~fD~Vv~dPPr~g~~~~~~~~l~~-------l~p~givyvsc~p~tlarDl-~~l~-y~l~~~~~~D  410 (425)
T 2jjq_A          352 ------------KGFDTVIVDPPRAGLHPRLVKRLNR-------EKPGVIVYVSCNPETFARDV-KMLD-YRIDEIVALD  410 (425)
T ss_dssp             ------------TTCSEEEECCCTTCSCHHHHHHHHH-------HCCSEEEEEESCHHHHHHHH-HHSS-CCEEEEEEEC
T ss_pred             ------------cCCCEEEEcCCccchHHHHHHHHHh-------cCCCcEEEEECChHHHHhHH-hhCe-EEEEEEEEEC
Confidence                        15899999999988753  333433       223332222222 2 33332 2223 888887777 


Q ss_pred             ----hhhHHHHHh
Q 014571          407 ----TALIESFLM  415 (422)
Q Consensus       407 ----t~~~~~~~~  415 (422)
                          |.|+|++..
T Consensus       411 mFP~T~HvE~v~l  423 (425)
T 2jjq_A          411 MFPHTPHVELVAK  423 (425)
T ss_dssp             CSTTSSCCEEEEE
T ss_pred             cCCCCceEEEEEE
Confidence                999998654

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=99.06  E-value=1.7e-10  Score=113.73  Aligned_cols=95  Identities=15%  Similarity=0.117  Sum_probs=78.8

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      .+...|++++|.+|||+|||+|+.|..+++..+ .++|+|+|+++.+++.++++++.+| .++.++++|...++......
T Consensus        17 e~l~~L~~~~g~~vLD~g~G~G~~s~~la~~~~-~~~VigvD~d~~al~~A~~~~~~~g-~~v~~v~~d~~~l~~~l~~~   94 (301)
T 1m6y_A           17 EVIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKTL   94 (301)
T ss_dssp             HHHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHHT
T ss_pred             HHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHHhcC-CcEEEEECCHHHHHHHHHhc
Confidence            355678899999999999999999999999875 6899999999999999999999988 78999999988764211100


Q ss_pred             CCCccccCCCCCCCCCceeecCCcccc
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                                ....||.|++|+|||+.
T Consensus        95 ----------g~~~~D~Vl~D~gvSs~  111 (301)
T 1m6y_A           95 ----------GIEKVDGILMDLGVSTY  111 (301)
T ss_dssp             ----------TCSCEEEEEEECSCCHH
T ss_pred             ----------CCCCCCEEEEcCccchh
Confidence                      01468999999999864

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.06  E-value=3.9e-10  Score=104.17  Aligned_cols=101  Identities=12%  Similarity=0.074  Sum_probs=81.1

Q ss_pred             EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhh
Q 014571          245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALK  323 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~  323 (422)
                      ++...+.+...++...++.+|||+|||+|..|.++++.+++.++|+++|+++.+++.+++++++.|+.+ ++++++|+..
T Consensus        48 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  127 (225)
T 3tr6_A           48 TAPEQAQLLALLVKLMQAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKD  127 (225)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHH
Confidence            445556666667777788999999999999999999988767999999999999999999999999965 9999999976


Q ss_pred             hhhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      .........         ..+.||.|++|++
T Consensus       128 ~~~~~~~~~---------~~~~fD~v~~~~~  149 (225)
T 3tr6_A          128 TLAELIHAG---------QAWQYDLIYIDAD  149 (225)
T ss_dssp             HHHHHHTTT---------CTTCEEEEEECSC
T ss_pred             HHHHhhhcc---------CCCCccEEEECCC
Confidence            543211000         0256999999886

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.06  E-value=3e-10  Score=109.18  Aligned_cols=100  Identities=13%  Similarity=0.199  Sum_probs=72.6

Q ss_pred             ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh-CCcceEEE
Q 014571          239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-GLKCITTY  317 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~-g~~nv~~~  317 (422)
                      ..+...+++..++.++..+++++|.+|||+|||+|..+.++++.+.+.++|+++|+++.+++.+++++++. |..++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~g~~~v~~~  167 (275)
T 1yb2_A           88 RRNTQIISEIDASYIIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTS  167 (275)
T ss_dssp             ------------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEE
T ss_pred             cccccccChhhHHHHHHHcCCCCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhcCCCCcEEEE
Confidence            44566677777788888999999999999999999999999998666789999999999999999999998 98899999


Q ss_pred             ecchhhhhhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       318 ~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      .+|+....                ..+.||.|++|.|
T Consensus       168 ~~d~~~~~----------------~~~~fD~Vi~~~~  188 (275)
T 1yb2_A          168 RSDIADFI----------------SDQMYDAVIADIP  188 (275)
T ss_dssp             CSCTTTCC----------------CSCCEEEEEECCS
T ss_pred             ECchhccC----------------cCCCccEEEEcCc
Confidence            99986521                1246999999876

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.05  E-value=1e-09  Score=98.22  Aligned_cols=115  Identities=13%  Similarity=0.046  Sum_probs=83.9

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .+++|.+|||+|||+|..|..+++.   .++|+|+|+++.+++.+++++++.|+.++++++.|...+...          
T Consensus        19 ~~~~~~~vLDiGcG~G~~~~~la~~---~~~v~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~~~~~l~~~----------   85 (185)
T 3mti_A           19 VLDDESIVVDATMGNGNDTAFLAGL---SKKVYAFDVQEQALGKTSQRLSDLGIENTELILDGHENLDHY----------   85 (185)
T ss_dssp             TCCTTCEEEESCCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHHTCCCEEEEESCGGGGGGT----------
T ss_pred             hCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCcHHHHHhh----------
Confidence            3568999999999999999999987   589999999999999999999999998999999776653211          


Q ss_pred             cCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          338 CNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                          ..+.||.|+++.+.--.+.                ...  ......+.+.|+.+.. |+.+|.++++
T Consensus        86 ----~~~~fD~v~~~~~~~~~~~----------------~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~  134 (185)
T 3mti_A           86 ----VREPIRAAIFNLGYLPSAD----------------KSV--ITKPHTTLEAIEKILDRLEVGGRLAIM  134 (185)
T ss_dssp             ----CCSCEEEEEEEEC-----------------------------CHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----ccCCcCEEEEeCCCCCCcc----------------hhc--ccChhhHHHHHHHHHHhcCCCcEEEEE
Confidence                1356999987642211111                001  1233456677777755 8999998873

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.05  E-value=8.1e-10  Score=102.21  Aligned_cols=98  Identities=13%  Similarity=0.078  Sum_probs=77.7

Q ss_pred             EEEeChhH-HHHHHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-----Ccce
Q 014571          243 IFLQNLPS-IVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-----LKCI  314 (422)
Q Consensus       243 ~~~Qd~~S-~lv~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-----~~nv  314 (422)
                      ..+|++.. ......+.  ++++.+|||+|||+|.+|.++++.+++.++|+++|+++.+++.+++++++.|     ..++
T Consensus        56 ~~~~~p~~~~~~l~~l~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v  135 (226)
T 1i1n_A           56 ATISAPHMHAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRV  135 (226)
T ss_dssp             EEECCHHHHHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSE
T ss_pred             ceecCHHHHHHHHHHHHhhCCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcE
Confidence            34455441 12334454  7899999999999999999999988767899999999999999999999976     4689


Q ss_pred             EEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          315 TTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       315 ~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      .++.+|+.....               ..+.||.|+++++|
T Consensus       136 ~~~~~d~~~~~~---------------~~~~fD~i~~~~~~  161 (226)
T 1i1n_A          136 QLVVGDGRMGYA---------------EEAPYDAIHVGAAA  161 (226)
T ss_dssp             EEEESCGGGCCG---------------GGCCEEEEEECSBB
T ss_pred             EEEECCcccCcc---------------cCCCcCEEEECCch
Confidence            999999874321               12469999999988

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.05  E-value=5.2e-10  Score=106.11  Aligned_cols=101  Identities=15%  Similarity=0.126  Sum_probs=84.3

Q ss_pred             EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhh
Q 014571          245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK  323 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~  323 (422)
                      ++...+++...++...++.+|||+|||+|..|..+|+.+++.++|+++|+++.+++.+++++++.|+. +|+++.+|+..
T Consensus        47 ~~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~  126 (248)
T 3tfw_A           47 VAANQGQFLALLVRLTQAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQ  126 (248)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHhhcCCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34666677777767788999999999999999999999876799999999999999999999999986 79999999987


Q ss_pred             hhhccCCCCCCccccCCCCCCCCCceeecCCccc
Q 014571          324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                      ......            ..+.||.|++|+++..
T Consensus       127 ~l~~~~------------~~~~fD~V~~d~~~~~  148 (248)
T 3tfw_A          127 SLESLG------------ECPAFDLIFIDADKPN  148 (248)
T ss_dssp             HHHTCC------------SCCCCSEEEECSCGGG
T ss_pred             HHHhcC------------CCCCeEEEEECCchHH
Confidence            543210            1246999999997655

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.05  E-value=6e-10  Score=104.45  Aligned_cols=121  Identities=14%  Similarity=0.160  Sum_probs=94.6

Q ss_pred             ceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEec
Q 014571          241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKL  319 (422)
Q Consensus       241 G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~  319 (422)
                      +...+|.....+...++...++.+|||+|||+|..|..+|+.. +.++|+++|+++.+++.+++++++.|+. +++++.+
T Consensus        51 ~~~~~~~~~~~~l~~~~~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~  129 (232)
T 3ntv_A           51 EVPIVDRLTLDLIKQLIRMNNVKNILEIGTAIGYSSMQFASIS-DDIHVTTIERNETMIQYAKQNLATYHFENQVRIIEG  129 (232)
T ss_dssp             TCCCCCHHHHHHHHHHHHHHTCCEEEEECCSSSHHHHHHHTTC-TTCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEES
T ss_pred             CCCCcCHHHHHHHHHHHhhcCCCEEEEEeCchhHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEC
Confidence            3334566666777777777889999999999999999999954 4689999999999999999999999985 7999999


Q ss_pred             chhhhhh-ccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-
Q 014571          320 DALKAVR-RKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-  397 (422)
Q Consensus       320 Da~~~~~-~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-  397 (422)
                      |+..... ..              .+.||.|++|+++..                              +.++++.+.. 
T Consensus       130 d~~~~~~~~~--------------~~~fD~V~~~~~~~~------------------------------~~~~l~~~~~~  165 (232)
T 3ntv_A          130 NALEQFENVN--------------DKVYDMIFIDAAKAQ------------------------------SKKFFEIYTPL  165 (232)
T ss_dssp             CGGGCHHHHT--------------TSCEEEEEEETTSSS------------------------------HHHHHHHHGGG
T ss_pred             CHHHHHHhhc--------------cCCccEEEEcCcHHH------------------------------HHHHHHHHHHh
Confidence            9976532 11              246999998854222                              2345666654 


Q ss_pred             ceeccEEEe
Q 014571          398 LRIQKVLVL  406 (422)
Q Consensus       398 lr~~~~~~~  406 (422)
                      |+.+|++++
T Consensus       166 LkpgG~lv~  174 (232)
T 3ntv_A          166 LKHQGLVIT  174 (232)
T ss_dssp             EEEEEEEEE
T ss_pred             cCCCeEEEE
Confidence            799999988

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=99.04  E-value=4.1e-10  Score=103.24  Aligned_cols=114  Identities=16%  Similarity=0.243  Sum_probs=80.8

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +++|.+|||+|||||++|..+++.   .++|+|+|+++.+           ...++.++++|.+...........    .
T Consensus        23 ~~~g~~VLDlG~G~G~~s~~la~~---~~~V~gvD~~~~~-----------~~~~v~~~~~D~~~~~~~~~~~~~----~   84 (191)
T 3dou_A           23 VRKGDAVIEIGSSPGGWTQVLNSL---ARKIISIDLQEME-----------EIAGVRFIRCDIFKETIFDDIDRA----L   84 (191)
T ss_dssp             SCTTCEEEEESCTTCHHHHHHTTT---CSEEEEEESSCCC-----------CCTTCEEEECCTTSSSHHHHHHHH----H
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHc---CCcEEEEeccccc-----------cCCCeEEEEccccCHHHHHHHHHH----h
Confidence            578999999999999999999987   6899999999752           346899999998764211000000    0


Q ss_pred             CCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          339 NSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                      .....+.||.|++|+++..+|.             |.....   ....++..+|+.+.. ||.+|.+++
T Consensus        85 ~~~~~~~~D~Vlsd~~~~~~g~-------------~~~d~~---~~~~l~~~~l~~a~~~LkpGG~lv~  137 (191)
T 3dou_A           85 REEGIEKVDDVVSDAMAKVSGI-------------PSRDHA---VSYQIGQRVMEIAVRYLRNGGNVLL  137 (191)
T ss_dssp             HHHTCSSEEEEEECCCCCCCSC-------------HHHHHH---HHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             hcccCCcceEEecCCCcCCCCC-------------cccCHH---HHHHHHHHHHHHHHHHccCCCEEEE
Confidence            0000136999999999887777             222211   344577888888866 899999997

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.03  E-value=5.6e-11  Score=107.85  Aligned_cols=131  Identities=15%  Similarity=0.086  Sum_probs=68.8

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.++++++..|. +++++++|+........          
T Consensus        29 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~----------   96 (215)
T 4dzr_A           29 PSGTRVIDVGTGSGCIAVSIALAC-PGVSVTAVDLSMDALAVARRNAERFGA-VVDWAAADGIEWLIERA----------   96 (215)
T ss_dssp             CTTEEEEEEESSBCHHHHHHHHHC-TTEEEEEEECC--------------------CCHHHHHHHHHHHH----------
T ss_pred             CCCCEEEEecCCHhHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHHHHHhCC-ceEEEEcchHhhhhhhh----------
Confidence            789999999999999999999985 457999999999999999999999988 89999999987432100          


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCccc--chhHHHHHHHHHHhcc-ceeccE-EEe
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTC--GECGMAQEEINALVVG-LRIQKV-LVL  406 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~--~~l~~~Q~~IL~~a~~-lr~~~~-~~~  406 (422)
                       ...+.||.|++|+|+...+.   +..-+.....+.+.....  ..-.....++++.+.. |+.+|. +++
T Consensus        97 -~~~~~fD~i~~npp~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~  163 (215)
T 4dzr_A           97 -ERGRPWHAIVSNPPYIPTGE---IDQLEPSVRDYEPRLALDGGEDGLQFYRRMAALPPYVLARGRAGVFL  163 (215)
T ss_dssp             -HTTCCBSEEEECCCCCC---------------------------CTTHHHHHHHTCCGGGBCSSSEEEEE
T ss_pred             -hccCcccEEEECCCCCCCcc---ccccChhhhccCccccccCCCcHHHHHHHHHHHHHHHhcCCCeEEEE
Confidence             01256999999999988776   222222222222211100  0011223677877765 899999 665

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=99.03  E-value=8.6e-10  Score=104.03  Aligned_cols=125  Identities=12%  Similarity=0.129  Sum_probs=93.8

Q ss_pred             EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhh
Q 014571          245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK  323 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~  323 (422)
                      ++...+++...++...++.+|||+|||+|..|..+|+.+++.++|+++|+++.+++.+++++++.|+. +|+++.+|+..
T Consensus        54 ~~~~~~~~l~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~  133 (237)
T 3c3y_A           54 TSPLAGQLMSFVLKLVNAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAML  133 (237)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHH
Confidence            34455566666666677889999999999999999999876799999999999999999999999985 59999999987


Q ss_pred             hhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceecc
Q 014571          324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQK  402 (422)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~  402 (422)
                      .........        ...+.||.|++|+++..                              ..++++.+.. ||.+|
T Consensus       134 ~l~~l~~~~--------~~~~~fD~I~~d~~~~~------------------------------~~~~l~~~~~~L~pGG  175 (237)
T 3c3y_A          134 ALDNLLQGQ--------ESEGSYDFGFVDADKPN------------------------------YIKYHERLMKLVKVGG  175 (237)
T ss_dssp             HHHHHHHST--------TCTTCEEEEEECSCGGG------------------------------HHHHHHHHHHHEEEEE
T ss_pred             HHHHHHhcc--------CCCCCcCEEEECCchHH------------------------------HHHHHHHHHHhcCCCe
Confidence            543211000        00256999999965421                              1234555544 79999


Q ss_pred             EEEeh
Q 014571          403 VLVLT  407 (422)
Q Consensus       403 ~~~~t  407 (422)
                      ++++.
T Consensus       176 ~lv~d  180 (237)
T 3c3y_A          176 IVAYD  180 (237)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99884

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=99.02  E-value=4.9e-10  Score=109.24  Aligned_cols=85  Identities=15%  Similarity=0.154  Sum_probs=74.5

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .++|++|||||||+|+.|+++|..  +..+|+|+|+++..++.+++|++..|+.+ ++++++|++.+..           
T Consensus       123 ~~~g~~VlD~~aG~G~~~i~~a~~--g~~~V~avD~np~a~~~~~~N~~~N~v~~~v~~~~~D~~~~~~-----------  189 (278)
T 3k6r_A          123 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-----------  189 (278)
T ss_dssp             CCTTCEEEETTCTTTTTTHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-----------
T ss_pred             cCCCCEEEEecCcCcHHHHHHHHh--cCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCcHHHhcc-----------
Confidence            578999999999999999999986  34689999999999999999999999965 9999999987531           


Q ss_pred             cCCCCCCCCCceeecCCccccCch
Q 014571          338 CNSKDNNYITSQTSDSMKLHKEVP  361 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg~G~l  361 (422)
                           .+.||+|+.|.|.++...+
T Consensus       190 -----~~~~D~Vi~~~p~~~~~~l  208 (278)
T 3k6r_A          190 -----ENIADRILMGYVVRTHEFI  208 (278)
T ss_dssp             -----CSCEEEEEECCCSSGGGGH
T ss_pred             -----ccCCCEEEECCCCcHHHHH
Confidence                 3568999999999887663

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.00  E-value=1e-09  Score=103.44  Aligned_cols=94  Identities=14%  Similarity=0.106  Sum_probs=80.3

Q ss_pred             ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhh
Q 014571          247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAV  325 (422)
Q Consensus       247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~  325 (422)
                      ...+..+...+++++|.+|||+|||+|..+.++++.+++.++|+++|+++.+++.++++++..|+.+ ++++.+|+....
T Consensus        79 ~~~~~~i~~~~~~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~  158 (255)
T 3mb5_A           79 PKDAALIVAYAGISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWAGFDDRVTIKLKDIYEGI  158 (255)
T ss_dssp             HHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHTCTTTEEEECSCGGGCC
T ss_pred             HhHHHHHHHhhCCCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHcCCCCceEEEECchhhcc
Confidence            3344567778899999999999999999999999997778999999999999999999999999977 999999987431


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                            +          .+.||.|++|+|+.
T Consensus       159 ------~----------~~~~D~v~~~~~~~  173 (255)
T 3mb5_A          159 ------E----------EENVDHVILDLPQP  173 (255)
T ss_dssp             ------C----------CCSEEEEEECSSCG
T ss_pred             ------C----------CCCcCEEEECCCCH
Confidence                  1          24589999988754

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=98.99  E-value=2.4e-09  Score=100.56  Aligned_cols=91  Identities=15%  Similarity=0.155  Sum_probs=77.6

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh-CCcceEEEecchhhhhhccC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-GLKCITTYKLDALKAVRRKN  329 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~-g~~nv~~~~~Da~~~~~~~~  329 (422)
                      ..+...+++.+|.+|||++||+|..+..+++.+++.++|+++|+++.+++.++++++.. |..++.+..+|+...+.   
T Consensus        86 ~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~~g~~~v~~~~~d~~~~~~---  162 (258)
T 2pwy_A           86 SAMVTLLDLAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAFWQVENVRFHLGKLEEAEL---  162 (258)
T ss_dssp             HHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHCCCCCEEEEESCGGGCCC---
T ss_pred             HHHHHHcCCCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCEEEEECchhhcCC---
Confidence            45667788999999999999999999999998776789999999999999999999998 87889999999876411   


Q ss_pred             CCCCCccccCCCCCCCCCceeecCCcc
Q 014571          330 ESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                                  ..+.||.|++|.|+.
T Consensus       163 ------------~~~~~D~v~~~~~~~  177 (258)
T 2pwy_A          163 ------------EEAAYDGVALDLMEP  177 (258)
T ss_dssp             ------------CTTCEEEEEEESSCG
T ss_pred             ------------CCCCcCEEEECCcCH
Confidence                        024689999987744

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=98.99  E-value=9e-10  Score=107.17  Aligned_cols=139  Identities=14%  Similarity=0.063  Sum_probs=95.9

Q ss_pred             ceEEEeChhHHHHHHhcC---CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEE
Q 014571          241 GEIFLQNLPSIVTAHALD---PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITT  316 (422)
Q Consensus       241 G~~~~Qd~~S~lv~~~L~---p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~  316 (422)
                      |.+..+.....++-.+++   ..++.+|||+|||+|..+..++..  +..+|+|+|+|+.+++.+++|+++.|+.+ +++
T Consensus       100 ~~lipr~~te~lv~~~l~~~~~~~~~~vLDlG~GsG~~~~~la~~--~~~~v~~vDis~~al~~A~~n~~~~~l~~~v~~  177 (284)
T 1nv8_A          100 GVFVPRPETEELVELALELIRKYGIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFV  177 (284)
T ss_dssp             TSCCCCTTHHHHHHHHHHHHHHHTCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEE
T ss_pred             CceecChhHHHHHHHHHHHhcccCCCEEEEEeCchhHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEE
Confidence            444444444444444433   347789999999999999999998  56899999999999999999999999976 999


Q ss_pred             EecchhhhhhccCCCCCCccccCCCCCCCC---CceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHH
Q 014571          317 YKLDALKAVRRKNESNDEPNMCNSKDNNYI---TSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINA  393 (422)
Q Consensus       317 ~~~Da~~~~~~~~~~~~~~~~~~~~~~~~F---D~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~  393 (422)
                      +++|......                 +.|   |.|+++|||.+.+.    .-.++..  |.+........  -..++++
T Consensus       178 ~~~D~~~~~~-----------------~~f~~~D~IvsnPPyi~~~~----~l~~~v~--~ep~~al~~~~--dgl~~~~  232 (284)
T 1nv8_A          178 RKGEFLEPFK-----------------EKFASIEMILSNPPYVKSSA----HLPKDVL--FEPPEALFGGE--DGLDFYR  232 (284)
T ss_dssp             EESSTTGGGG-----------------GGTTTCCEEEECCCCBCGGG----SCTTSCC--CSCHHHHBCTT--TSCHHHH
T ss_pred             EECcchhhcc-----------------cccCCCCEEEEcCCCCCccc----ccChhhc--cCcHHHhcCCC--cHHHHHH
Confidence            9999876321                 236   99999999998765    1123332  33321100000  0113444


Q ss_pred             Hhc--cceeccEEEe
Q 014571          394 LVV--GLRIQKVLVL  406 (422)
Q Consensus       394 ~a~--~lr~~~~~~~  406 (422)
                      .+.  .++.+|.+++
T Consensus       233 ~i~~~~l~pgG~l~~  247 (284)
T 1nv8_A          233 EFFGRYDTSGKIVLM  247 (284)
T ss_dssp             HHHHHCCCTTCEEEE
T ss_pred             HHHHhcCCCCCEEEE
Confidence            444  3678999888

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=98.98  E-value=3.8e-09  Score=100.82  Aligned_cols=91  Identities=14%  Similarity=0.177  Sum_probs=77.1

Q ss_pred             hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh-C--CcceEEEecchhhhh
Q 014571          249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-G--LKCITTYKLDALKAV  325 (422)
Q Consensus       249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~-g--~~nv~~~~~Da~~~~  325 (422)
                      ....+...+++++|.+|||+|||+|..+.++++.+++.++|+++|+++.+++.++++++.. |  ..++.+..+|+....
T Consensus        87 ~~~~i~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~~~~~  166 (280)
T 1i9g_A           87 DAAQIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDLADSE  166 (280)
T ss_dssp             HHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCGGGCC
T ss_pred             HHHHHHHHcCCCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECchHhcC
Confidence            4455667788999999999999999999999998776789999999999999999999998 7  678999999987642


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      .               ..+.||.|++|.|
T Consensus       167 ~---------------~~~~~D~v~~~~~  180 (280)
T 1i9g_A          167 L---------------PDGSVDRAVLDML  180 (280)
T ss_dssp             C---------------CTTCEEEEEEESS
T ss_pred             C---------------CCCceeEEEECCc
Confidence            1               0245899999766

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=98.97  E-value=2.3e-09  Score=96.68  Aligned_cols=82  Identities=17%  Similarity=0.141  Sum_probs=70.3

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .+|.+|||+|||+|..+..+++.  +..+|+++|+++.+++.+++|++..|+.+++++++|+........          
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~~----------  110 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR--GAASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAGT----------  110 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHCC----------
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC--CCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhcc----------
Confidence            58899999999999999988874  356899999999999999999999999899999999988753211          


Q ss_pred             CCCCCCCCceeecCCcc
Q 014571          340 SKDNNYITSQTSDSMKL  356 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCS  356 (422)
                         .+.||.|++|+|..
T Consensus       111 ---~~~fD~i~~~~p~~  124 (189)
T 3p9n_A          111 ---TSPVDLVLADPPYN  124 (189)
T ss_dssp             ---SSCCSEEEECCCTT
T ss_pred             ---CCCccEEEECCCCC
Confidence               35699999998854

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=98.97  E-value=2.8e-09  Score=97.34  Aligned_cols=98  Identities=15%  Similarity=0.186  Sum_probs=82.8

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL  319 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~  319 (422)
                      .|.+..|..........++++++.+|||+|||+|..+.++++.   .++|+++|+++.+++.+++++++.|+++++++.+
T Consensus        56 ~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~  132 (210)
T 3lbf_A           56 QGQTISQPYMVARMTELLELTPQSRVLEIGTGSGYQTAILAHL---VQHVCSVERIKGLQWQARRRLKNLDLHNVSTRHG  132 (210)
T ss_dssp             TSCEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEES
T ss_pred             CCCEeCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCceEEEEC
Confidence            4556666666667778889999999999999999999999998   4799999999999999999999999999999999


Q ss_pred             chhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          320 DALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       320 Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      |+......               .+.||.|+++..+
T Consensus       133 d~~~~~~~---------------~~~~D~i~~~~~~  153 (210)
T 3lbf_A          133 DGWQGWQA---------------RAPFDAIIVTAAP  153 (210)
T ss_dssp             CGGGCCGG---------------GCCEEEEEESSBC
T ss_pred             CcccCCcc---------------CCCccEEEEccch
Confidence            98764321               3569999997543

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=98.96  E-value=3e-09  Score=96.90  Aligned_cols=99  Identities=15%  Similarity=0.078  Sum_probs=80.6

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL  319 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~  319 (422)
                      .|.+. ++.....+...+++++|.+|||+|||+|..+..+++.. +.++|+++|+++.+++.+++++++.|+.+++++.+
T Consensus        20 ~g~~~-~~~i~~~~l~~l~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~   97 (204)
T 3e05_A           20 KKLIT-KQEVRAVTLSKLRLQDDLVMWDIGAGSASVSIEASNLM-PNGRIFALERNPQYLGFIRDNLKKFVARNVTLVEA   97 (204)
T ss_dssp             TTTSC-CHHHHHHHHHHTTCCTTCEEEEETCTTCHHHHHHHHHC-TTSEEEEEECCHHHHHHHHHHHHHHTCTTEEEEEC
T ss_pred             CCcCC-hHHHHHHHHHHcCCCCCCEEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence            46663 44444556677889999999999999999999999984 46899999999999999999999999989999999


Q ss_pred             chhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          320 DALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       320 Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      |+.....               ....||.|+++.+.
T Consensus        98 d~~~~~~---------------~~~~~D~i~~~~~~  118 (204)
T 3e05_A           98 FAPEGLD---------------DLPDPDRVFIGGSG  118 (204)
T ss_dssp             CTTTTCT---------------TSCCCSEEEESCCT
T ss_pred             Chhhhhh---------------cCCCCCEEEECCCC
Confidence            9864321               12458999998654

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=98.95  E-value=2.7e-09  Score=105.46  Aligned_cols=94  Identities=12%  Similarity=0.129  Sum_probs=75.2

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-----------CcceEEEe
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-----------LKCITTYK  318 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-----------~~nv~~~~  318 (422)
                      +..+...+++.+|.+|||+|||+|..+..++...++.++|+++|+++.+++.++++++++|           ..++++..
T Consensus        94 ~~~~l~~l~~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~~v~~~~  173 (336)
T 2b25_A           94 INMILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPDNVDFIH  173 (336)
T ss_dssp             HHHHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCCCEEEEE
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCCceEEEE
Confidence            4556677789999999999999999999999987777899999999999999999999865           36799999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      +|+.......             ..+.||.|++|.|..
T Consensus       174 ~d~~~~~~~~-------------~~~~fD~V~~~~~~~  198 (336)
T 2b25_A          174 KDISGATEDI-------------KSLTFDAVALDMLNP  198 (336)
T ss_dssp             SCTTCCC--------------------EEEEEECSSST
T ss_pred             CChHHccccc-------------CCCCeeEEEECCCCH
Confidence            9987642110             124589999987643

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=98.95  E-value=2.6e-09  Score=100.00  Aligned_cols=86  Identities=14%  Similarity=0.107  Sum_probs=73.1

Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc--ceEEEecchhhhhhccCCCCC
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK--CITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~--nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      ...++++.+|||+|||+|..|..+|+.+++.++|+++|+++.+++.+++++++.|+.  +|+++.+|+.......     
T Consensus        51 ~~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-----  125 (221)
T 3dr5_A           51 TTNGNGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-----  125 (221)
T ss_dssp             HSCCTTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-----
T ss_pred             hhCCCCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-----
Confidence            344556669999999999999999998877799999999999999999999999986  7999999998764321     


Q ss_pred             CccccCCCCCCCCCceeecCC
Q 014571          334 EPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaP  354 (422)
                              ..+.||.|++|++
T Consensus       126 --------~~~~fD~V~~d~~  138 (221)
T 3dr5_A          126 --------ANDSYQLVFGQVS  138 (221)
T ss_dssp             --------CTTCEEEEEECCC
T ss_pred             --------cCCCcCeEEEcCc
Confidence                    0356999999874

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=98.94  E-value=1.9e-09  Score=103.22  Aligned_cols=141  Identities=14%  Similarity=0.082  Sum_probs=95.2

Q ss_pred             hhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH---hCCc-ceEEEecchhh
Q 014571          248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE---MGLK-CITTYKLDALK  323 (422)
Q Consensus       248 ~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r---~g~~-nv~~~~~Da~~  323 (422)
                      .-+.+.+.++...++.+|||+|||+|..+..+++... ..+|+++|+++.+++.+++|++.   .|+. +++++++|...
T Consensus        23 ~D~~lL~~~~~~~~~~~VLDlG~G~G~~~l~la~~~~-~~~v~gvDi~~~~~~~a~~n~~~~~~~~l~~~v~~~~~D~~~  101 (260)
T 2ozv_A           23 MDAMLLASLVADDRACRIADLGAGAGAAGMAVAARLE-KAEVTLYERSQEMAEFARRSLELPDNAAFSARIEVLEADVTL  101 (260)
T ss_dssp             CHHHHHHHTCCCCSCEEEEECCSSSSHHHHHHHHHCT-TEEEEEEESSHHHHHHHHHHTTSGGGTTTGGGEEEEECCTTC
T ss_pred             cHHHHHHHHhcccCCCEEEEeCChHhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHhhhhCCCcceEEEEeCCHHH
Confidence            4578888889989999999999999999999999853 57999999999999999999998   8886 59999999876


Q ss_pred             hhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceecc
Q 014571          324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQK  402 (422)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~  402 (422)
                      .........        ...+.||.|++++|....+.    ...++.........     ......++++.+.. |+.+|
T Consensus       102 ~~~~~~~~~--------~~~~~fD~Vv~nPPy~~~~~----~~~~~~~~~~a~~~-----~~~~~~~~l~~~~~~LkpgG  164 (260)
T 2ozv_A          102 RAKARVEAG--------LPDEHFHHVIMNPPYNDAGD----RRTPDALKAEAHAM-----TEGLFEDWIRTASAIMVSGG  164 (260)
T ss_dssp             CHHHHHHTT--------CCTTCEEEEEECCCC------------------------------CCHHHHHHHHHHHEEEEE
T ss_pred             Hhhhhhhhc--------cCCCCcCEEEECCCCcCCCC----CCCcCHHHHHHhhc-----CcCCHHHHHHHHHHHcCCCC
Confidence            532100000        01356999999999987642    12233211110000     00124567777755 89999


Q ss_pred             EEEe
Q 014571          403 VLVL  406 (422)
Q Consensus       403 ~~~~  406 (422)
                      .+++
T Consensus       165 ~l~~  168 (260)
T 2ozv_A          165 QLSL  168 (260)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9887

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=98.93  E-value=2.5e-09  Score=98.10  Aligned_cols=95  Identities=13%  Similarity=0.069  Sum_probs=76.4

Q ss_pred             EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhh
Q 014571          245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK  323 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~  323 (422)
                      ++.....+...++...++.+|||+|||+|..|..+++.+++.++|+++|+++.+++.+++++++.|+. +++++.+|+..
T Consensus        40 ~~~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  119 (210)
T 3c3p_A           40 VDRQTGRLLYLLARIKQPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLG  119 (210)
T ss_dssp             CCHHHHHHHHHHHHHHCCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHH
T ss_pred             cCHHHHHHHHHHHHhhCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHH
Confidence            34445555555555567889999999999999999998865789999999999999999999999985 59999999976


Q ss_pred             hhhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          324 AVRRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       324 ~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      ....              ..+ ||.|++|++
T Consensus       120 ~~~~--------------~~~-fD~v~~~~~  135 (210)
T 3c3p_A          120 IAAG--------------QRD-IDILFMDCD  135 (210)
T ss_dssp             HHTT--------------CCS-EEEEEEETT
T ss_pred             Hhcc--------------CCC-CCEEEEcCC
Confidence            5311              124 999999843

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=98.92  E-value=2.3e-09  Score=103.68  Aligned_cols=85  Identities=15%  Similarity=0.142  Sum_probs=72.6

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .++|++|||+|||+|+.+..+|+...  .+|+|+|+++.+++.+++|++..|+.+ ++++++|+..+..           
T Consensus       123 ~~~~~~VLDlgcG~G~~~~~la~~~~--~~V~~vD~s~~~~~~a~~n~~~n~~~~~v~~~~~D~~~~~~-----------  189 (278)
T 2frn_A          123 AKPDELVVDMFAGIGHLSLPIAVYGK--AKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-----------  189 (278)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTC--CEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-----------
T ss_pred             CCCCCEEEEecccCCHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECCHHHhcc-----------
Confidence            56899999999999999999998742  279999999999999999999999876 9999999876532           


Q ss_pred             cCCCCCCCCCceeecCCccccCch
Q 014571          338 CNSKDNNYITSQTSDSMKLHKEVP  361 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg~G~l  361 (422)
                           .+.||.|++|+|++....+
T Consensus       190 -----~~~fD~Vi~~~p~~~~~~l  208 (278)
T 2frn_A          190 -----ENIADRILMGYVVRTHEFI  208 (278)
T ss_dssp             -----CSCEEEEEECCCSSGGGGH
T ss_pred             -----cCCccEEEECCchhHHHHH
Confidence                 3569999999997665543

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=98.92  E-value=1.4e-08  Score=90.15  Aligned_cols=89  Identities=13%  Similarity=0.079  Sum_probs=75.8

Q ss_pred             hhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc--eEEEecchhhhh
Q 014571          248 LPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC--ITTYKLDALKAV  325 (422)
Q Consensus       248 ~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n--v~~~~~Da~~~~  325 (422)
                      ..+......+.++++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.++++++..|+.+  +.++..|.....
T Consensus        39 ~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~~~~~---~~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~  115 (194)
T 1dus_A           39 KGTKILVENVVVDKDDDILDLGCGYGVIGIALADE---VKSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYENV  115 (194)
T ss_dssp             HHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTTC
T ss_pred             hHHHHHHHHcccCCCCeEEEeCCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHHHcCCCccceEEEECchhccc
Confidence            56667778888889999999999999999999887   5799999999999999999999999987  999999986532


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      .                .+.||.|++++|-
T Consensus       116 ~----------------~~~~D~v~~~~~~  129 (194)
T 1dus_A          116 K----------------DRKYNKIITNPPI  129 (194)
T ss_dssp             T----------------TSCEEEEEECCCS
T ss_pred             c----------------cCCceEEEECCCc
Confidence            1                3468999987653

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=98.91  E-value=1.1e-08  Score=94.13  Aligned_cols=115  Identities=9%  Similarity=0.048  Sum_probs=85.2

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +.++.+|||+|||+|..+..+|+... .+.|+|+|+++.+++.+++++++.|+.|+.++++|+..+....          
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~la~~~p-~~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~~d~~~~~~~~----------  107 (214)
T 1yzh_A           39 GNDNPIHVEVGSGKGAFVSGMAKQNP-DINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYF----------  107 (214)
T ss_dssp             TSCCCEEEEESCTTSHHHHHHHHHCT-TSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTS----------
T ss_pred             CCCCCeEEEEccCcCHHHHHHHHHCC-CCCEEEEEcCHHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhc----------
Confidence            35788999999999999999999853 5799999999999999999999999999999999987643111          


Q ss_pred             CCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          339 NSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                         ..+.||.|+++.|..-..            .+-.+.     .  ..+.++|+.+.. |+.+|++++
T Consensus       108 ---~~~~~D~i~~~~~~~~~~------------~~~~~~-----~--~~~~~~l~~~~~~LkpgG~l~~  154 (214)
T 1yzh_A          108 ---EDGEIDRLYLNFSDPWPK------------KRHEKR-----R--LTYKTFLDTFKRILPENGEIHF  154 (214)
T ss_dssp             ---CTTCCSEEEEESCCCCCS------------GGGGGG-----S--TTSHHHHHHHHHHSCTTCEEEE
T ss_pred             ---CCCCCCEEEEECCCCccc------------cchhhh-----c--cCCHHHHHHHHHHcCCCcEEEE
Confidence               134699999986521100            000000     0  125667777655 788888887

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=98.90  E-value=3.6e-09  Score=102.02  Aligned_cols=83  Identities=14%  Similarity=0.086  Sum_probs=72.8

Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      +..+.+|++|||+|||+|..|..+|...+ .++|+|+|+++..++.+++|++..|++|+.++++|+... ..        
T Consensus       114 ~~~~~~~~~VLDlgcG~G~~s~~la~~~~-~~~V~~vD~s~~av~~a~~n~~~n~l~~~~~~~~d~~~~-~~--------  183 (272)
T 3a27_A          114 AFISNENEVVVDMFAGIGYFTIPLAKYSK-PKLVYAIEKNPTAYHYLCENIKLNKLNNVIPILADNRDV-EL--------  183 (272)
T ss_dssp             HTSCCTTCEEEETTCTTTTTHHHHHHHTC-CSEEEEEECCHHHHHHHHHHHHHTTCSSEEEEESCGGGC-CC--------
T ss_pred             HHhcCCCCEEEEecCcCCHHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEECChHHc-Cc--------
Confidence            44578999999999999999999999853 579999999999999999999999999999999999865 11        


Q ss_pred             cccCCCCCCCCCceeecCCc
Q 014571          336 NMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaPC  355 (422)
                             ...||.|++|+|.
T Consensus       184 -------~~~~D~Vi~d~p~  196 (272)
T 3a27_A          184 -------KDVADRVIMGYVH  196 (272)
T ss_dssp             -------TTCEEEEEECCCS
T ss_pred             -------cCCceEEEECCcc
Confidence                   2458999999997

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=98.90  E-value=3.4e-09  Score=103.78  Aligned_cols=98  Identities=15%  Similarity=0.144  Sum_probs=79.3

Q ss_pred             EEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchh
Q 014571          243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL  322 (422)
Q Consensus       243 ~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~  322 (422)
                      |..+..-...++..+++.++++|||+|||+|..|..+++.   .++|+|+|+++.+++.++++++..|..+++++.+|+.
T Consensus        24 fl~~~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~La~~---~~~v~~vDi~~~~~~~a~~~~~~~~~~~v~~~~~D~~  100 (299)
T 2h1r_A           24 LLKNPGILDKIIYAAKIKSSDIVLEIGCGTGNLTVKLLPL---AKKVITIDIDSRMISEVKKRCLYEGYNNLEVYEGDAI  100 (299)
T ss_dssp             EECCHHHHHHHHHHHCCCTTCEEEEECCTTSTTHHHHTTT---SSEEEEECSCHHHHHHHHHHHHHTTCCCEEC----CC
T ss_pred             eecCHHHHHHHHHhcCCCCcCEEEEEcCcCcHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHHcCCCceEEEECchh
Confidence            4445556667778889999999999999999999999986   4699999999999999999999888889999999987


Q ss_pred             hhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571          323 KAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      +.+                 ...||.|++|+|+.....
T Consensus       101 ~~~-----------------~~~~D~Vv~n~py~~~~~  121 (299)
T 2h1r_A          101 KTV-----------------FPKFDVCTANIPYKISSP  121 (299)
T ss_dssp             SSC-----------------CCCCSEEEEECCGGGHHH
T ss_pred             hCC-----------------cccCCEEEEcCCcccccH
Confidence            542                 125899999999987654

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.89  E-value=4e-10  Score=106.95  Aligned_cols=104  Identities=13%  Similarity=0.103  Sum_probs=84.6

Q ss_pred             EEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecch
Q 014571          243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDA  321 (422)
Q Consensus       243 ~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da  321 (422)
                      +.++...+++...++...++.+|||+|||+|..|..+|+.+++.++|+++|+++.+++.+++++++.|+. +|+++.+|+
T Consensus        42 ~~i~~~~~~~l~~l~~~~~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda  121 (242)
T 3r3h_A           42 MQVAPEQAQFMQMLIRLTRAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREAKQEHKIKLRLGPA  121 (242)
T ss_dssp             TSCCHHHHHHHHHHHHHHTCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHTTCTTTEEEEESCH
T ss_pred             CccCHHHHHHHHHHHhhcCcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCH
Confidence            4456677777777777778899999999999999999999876799999999999999999999999985 799999999


Q ss_pred             hhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          322 LKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      ..........         ...+.||.|++|++.
T Consensus       122 ~~~l~~~~~~---------~~~~~fD~V~~d~~~  146 (242)
T 3r3h_A          122 LDTLHSLLNE---------GGEHQFDFIFIDADK  146 (242)
T ss_dssp             HHHHHHHHHH---------HCSSCEEEEEEESCG
T ss_pred             HHHHHHHhhc---------cCCCCEeEEEEcCCh
Confidence            8764321000         002569999999763

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=98.89  E-value=9.8e-09  Score=94.55  Aligned_cols=87  Identities=18%  Similarity=0.244  Sum_probs=73.8

Q ss_pred             hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhc
Q 014571          249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRR  327 (422)
Q Consensus       249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~  327 (422)
                      -...+...+++.+|++|||+|||+|..+..+++.   .++|+++|+++.+++.+++++++.|+. ++.++.+|+......
T Consensus        43 ~~~~~l~~l~~~~~~~vLDlGcG~G~~~~~la~~---~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~~~~  119 (204)
T 3njr_A           43 MRALTLAALAPRRGELLWDIGGGSGSVSVEWCLA---GGRAITIEPRADRIENIQKNIDTYGLSPRMRAVQGTAPAALAD  119 (204)
T ss_dssp             HHHHHHHHHCCCTTCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCTTGGGTT
T ss_pred             HHHHHHHhcCCCCCCEEEEecCCCCHHHHHHHHc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCCEEEEeCchhhhccc
Confidence            3345667788999999999999999999999987   579999999999999999999999998 899999998763211


Q ss_pred             cCCCCCCccccCCCCCCCCCceeecC
Q 014571          328 KNESNDEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~FD~VLvDa  353 (422)
                                     ...||.|+++.
T Consensus       120 ---------------~~~~D~v~~~~  130 (204)
T 3njr_A          120 ---------------LPLPEAVFIGG  130 (204)
T ss_dssp             ---------------SCCCSEEEECS
T ss_pred             ---------------CCCCCEEEECC
Confidence                           23589999765

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=98.88  E-value=8.2e-09  Score=101.41  Aligned_cols=98  Identities=14%  Similarity=0.101  Sum_probs=81.0

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      |..-...+...+++++|++|||+|||+|..+..+++.....++|+++|+++.+++.++++++..|+.++.+..+|+....
T Consensus        60 ~~~~~~~l~~~l~~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~g~~~v~~~~~d~~~~~  139 (317)
T 1dl5_A           60 QPSLMALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGV  139 (317)
T ss_dssp             CHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCC
T ss_pred             CHHHHHHHHHhcCCCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCCeEEEECChhhcc
Confidence            33444556677889999999999999999999999986545889999999999999999999999989999999987642


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCCcccc
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                      ..               .+.||.|+++.++...
T Consensus       140 ~~---------------~~~fD~Iv~~~~~~~~  157 (317)
T 1dl5_A          140 PE---------------FSPYDVIFVTVGVDEV  157 (317)
T ss_dssp             GG---------------GCCEEEEEECSBBSCC
T ss_pred             cc---------------CCCeEEEEEcCCHHHH
Confidence            11               2458999999877543

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=98.87  E-value=7.5e-09  Score=94.20  Aligned_cols=79  Identities=14%  Similarity=0.055  Sum_probs=68.5

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .+.+|.+|||+|||+|..+..+++.  +..+|+++|+++.+++.++++++..|+ +++++++|+..++            
T Consensus        46 ~~~~~~~vlD~g~G~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~------------  110 (207)
T 1wy7_A           46 GDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKG-KFKVFIGDVSEFN------------  110 (207)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTT-SEEEEESCGGGCC------------
T ss_pred             CCCCcCEEEEeeCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCC-CEEEEECchHHcC------------
Confidence            5678999999999999999999986  335899999999999999999999888 8999999987631            


Q ss_pred             cCCCCCCCCCceeecCCccc
Q 014571          338 CNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg  357 (422)
                            ..||.|++|+|+..
T Consensus       111 ------~~~D~v~~~~p~~~  124 (207)
T 1wy7_A          111 ------SRVDIVIMNPPFGS  124 (207)
T ss_dssp             ------CCCSEEEECCCCSS
T ss_pred             ------CCCCEEEEcCCCcc
Confidence                  25899999999744

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=98.87  E-value=1.3e-08  Score=94.23  Aligned_cols=115  Identities=4%  Similarity=-0.022  Sum_probs=85.1

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .++.+|||+|||+|..+..+|+.. +...|+|+|+++.+++.+++++++.|+.|+.++++|+..+....           
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~giD~s~~~l~~a~~~~~~~~~~nv~~~~~d~~~l~~~~-----------  104 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQN-PDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVF-----------  104 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHC-----------
T ss_pred             CCCceEEEEecCCCHHHHHHHHHC-CCCCEEEEEechHHHHHHHHHHHHcCCCCEEEEeCCHHHHHhhc-----------
Confidence            468899999999999999999985 45799999999999999999999999999999999998754211           


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                        ..+.||.|++..|+.                 |....-.-.++  .|.++|+.+.. |+.+|.++++
T Consensus       105 --~~~~~d~v~~~~~~p-----------------~~~~~~~~~rl--~~~~~l~~~~~~LkpgG~l~~~  152 (213)
T 2fca_A          105 --EPGEVKRVYLNFSDP-----------------WPKKRHEKRRL--TYSHFLKKYEEVMGKGGSIHFK  152 (213)
T ss_dssp             --CTTSCCEEEEESCCC-----------------CCSGGGGGGST--TSHHHHHHHHHHHTTSCEEEEE
T ss_pred             --CcCCcCEEEEECCCC-----------------CcCcccccccc--CcHHHHHHHHHHcCCCCEEEEE
Confidence              124589998754431                 11100000011  25667777755 7899999884

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=98.86  E-value=1.3e-08  Score=102.70  Aligned_cols=119  Identities=13%  Similarity=0.077  Sum_probs=87.5

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      +++|.+|||+|||+|+.+..+|... ..++|+|+|+++.+++.+++|+++.|+ .++++.++|+...+..          
T Consensus       215 ~~~~~~vLD~gCGsG~~~i~~a~~~-~~~~v~g~Dis~~~l~~A~~n~~~~gl~~~i~~~~~D~~~~~~~----------  283 (373)
T 3tm4_A          215 ELDGGSVLDPMCGSGTILIELALRR-YSGEIIGIEKYRKHLIGAEMNALAAGVLDKIKFIQGDATQLSQY----------  283 (373)
T ss_dssp             TCCSCCEEETTCTTCHHHHHHHHTT-CCSCEEEEESCHHHHHHHHHHHHHTTCGGGCEEEECCGGGGGGT----------
T ss_pred             cCCCCEEEEccCcCcHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhhCCcc----------
Confidence            7899999999999999999999874 346899999999999999999999998 6799999999886421          


Q ss_pred             cCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhccceeccEEEehhhHHH
Q 014571          338 CNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLVLTALIES  412 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~lr~~~~~~~t~~~~~  412 (422)
                           .+.||.|++|+|..-               ++...    ..+..++.++++.+..+--++.+++|..-+.
T Consensus       284 -----~~~fD~Ii~npPyg~---------------r~~~~----~~~~~ly~~~~~~l~r~l~g~~~~i~~~~~~  334 (373)
T 3tm4_A          284 -----VDSVDFAISNLPYGL---------------KIGKK----SMIPDLYMKFFNELAKVLEKRGVFITTEKKA  334 (373)
T ss_dssp             -----CSCEEEEEEECCCC-------------------------CCHHHHHHHHHHHHHHHEEEEEEEEESCHHH
T ss_pred             -----cCCcCEEEECCCCCc---------------ccCcc----hhHHHHHHHHHHHHHHHcCCeEEEEECCHHH
Confidence                 246899999999632               01111    1355567777777655223444444444333

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=98.86  E-value=4.4e-09  Score=96.50  Aligned_cols=80  Identities=13%  Similarity=0.062  Sum_probs=67.7

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC--cceEEEecchhhhhhccCCCCCCcccc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL--KCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~--~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +|.+|||+|||+|..+..+++.  ..++|+++|+|+.+++.+++|++..|+  .+++++++|+.......          
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~----------  120 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP----------  120 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC----------
T ss_pred             CCCeEEEcCCccCHHHHHHHHc--cCCEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh----------
Confidence            7889999999999999987765  236899999999999999999999998  68999999998753210          


Q ss_pred             CCCCCCC-CCceeecCCc
Q 014571          339 NSKDNNY-ITSQTSDSMK  355 (422)
Q Consensus       339 ~~~~~~~-FD~VLvDaPC  355 (422)
                         ..+. ||.|++|+|.
T Consensus       121 ---~~~~~fD~I~~~~~~  135 (201)
T 2ift_A          121 ---QNQPHFDVVFLDPPF  135 (201)
T ss_dssp             ---CSSCCEEEEEECCCS
T ss_pred             ---ccCCCCCEEEECCCC
Confidence               1356 9999999984

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.85  E-value=7.7e-09  Score=104.14  Aligned_cols=105  Identities=13%  Similarity=0.074  Sum_probs=82.3

Q ss_pred             ccceEEEeChhHHHHHHhc-CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEE
Q 014571          239 LEGEIFLQNLPSIVTAHAL-DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY  317 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L-~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~  317 (422)
                      .++....|+..+.++.... ...+|.+|||+| |+|..+..++.. ++.++|+++|+++.+++.+++|+++.|+.+|+++
T Consensus       149 ~~~~~~~~~~~~~~l~~~~~~~~~~~~VLDlG-G~G~~~~~la~~-~~~~~v~~vDi~~~~l~~a~~~~~~~g~~~v~~~  226 (373)
T 2qm3_A          149 DQAYVTPETTVARVILMHTRGDLENKDIFVLG-DDDLTSIALMLS-GLPKRIAVLDIDERLTKFIEKAANEIGYEDIEIF  226 (373)
T ss_dssp             TCCCBCHHHHHHHHHHHHHTTCSTTCEEEEES-CTTCHHHHHHHH-TCCSEEEEECSCHHHHHHHHHHHHHHTCCCEEEE
T ss_pred             CCeecCHHHHHHHHHHHhhcCCCCCCEEEEEC-CCCHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEE
Confidence            4556667777776664432 345789999999 999999998875 4457999999999999999999999998889999


Q ss_pred             ecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcccc
Q 014571          318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       318 ~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                      ++|+.....      .       ...+.||.|++|+||+..
T Consensus       227 ~~D~~~~l~------~-------~~~~~fD~Vi~~~p~~~~  254 (373)
T 2qm3_A          227 TFDLRKPLP------D-------YALHKFDTFITDPPETLE  254 (373)
T ss_dssp             CCCTTSCCC------T-------TTSSCBSEEEECCCSSHH
T ss_pred             EChhhhhch------h-------hccCCccEEEECCCCchH
Confidence            999876211      0       013469999999999754

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=98.84  E-value=6.5e-09  Score=95.40  Aligned_cols=79  Identities=11%  Similarity=0.020  Sum_probs=67.5

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      ++.+|||+|||+|..+..+++..  ..+|+++|+++.+++.+++|++..|+.+++++++|+......             
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~--~~~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~-------------  118 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY--AAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ-------------  118 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT--CSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS-------------
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC--CCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh-------------
Confidence            78899999999999999877752  358999999999999999999999998999999999875321             


Q ss_pred             CCCCCCCceeecCCc
Q 014571          341 KDNNYITSQTSDSMK  355 (422)
Q Consensus       341 ~~~~~FD~VLvDaPC  355 (422)
                       ..+.||.|++|+|.
T Consensus       119 -~~~~fD~V~~~~p~  132 (202)
T 2fpo_A          119 -KGTPHNIVFVDPPF  132 (202)
T ss_dssp             -CCCCEEEEEECCSS
T ss_pred             -cCCCCCEEEECCCC
Confidence             13469999999983

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=98.84  E-value=1.2e-08  Score=92.86  Aligned_cols=87  Identities=18%  Similarity=0.155  Sum_probs=71.1

Q ss_pred             HHHHHHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhc
Q 014571          250 SIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR  327 (422)
Q Consensus       250 S~lv~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~  327 (422)
                      +..+...+.  ++++.+|||+|||+|..+..+++.  +.++|+++|+++.+++.++++++..|+.++++..+|.....  
T Consensus        47 ~~~~~~~l~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~--  122 (205)
T 3grz_A           47 TQLAMLGIERAMVKPLTVADVGTGSGILAIAAHKL--GAKSVLATDISDESMTAAEENAALNGIYDIALQKTSLLADV--  122 (205)
T ss_dssp             HHHHHHHHHHHCSSCCEEEEETCTTSHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCCCCEEEESSTTTTC--
T ss_pred             HHHHHHHHHHhccCCCEEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEeccccccC--
Confidence            344444554  678999999999999999998875  34699999999999999999999999988999999976421  


Q ss_pred             cCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          328 KNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                                     .+.||.|+++.+.
T Consensus       123 ---------------~~~fD~i~~~~~~  135 (205)
T 3grz_A          123 ---------------DGKFDLIVANILA  135 (205)
T ss_dssp             ---------------CSCEEEEEEESCH
T ss_pred             ---------------CCCceEEEECCcH
Confidence                           2568999997643

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=98.83  E-value=1.8e-08  Score=101.99  Aligned_cols=122  Identities=14%  Similarity=0.040  Sum_probs=94.4

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc---ceEEEecchh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK---CITTYKLDAL  322 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~---nv~~~~~Da~  322 (422)
                      .|..+.+....+.+.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++|++..|+.   +++++..|..
T Consensus       207 ~d~~~~~ll~~l~~~~~~~VLDlGcG~G~~s~~la~~~-p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~  285 (375)
T 4dcm_A          207 LDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKN-PQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNAL  285 (375)
T ss_dssp             CCHHHHHHHHTCCCSCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTT
T ss_pred             ccHHHHHHHHhCcccCCCeEEEEeCcchHHHHHHHHHC-CCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhh
Confidence            36677888888988899999999999999999999984 4579999999999999999999999975   5888999986


Q ss_pred             hhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceec
Q 014571          323 KAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQ  401 (422)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~  401 (422)
                      ...                ..+.||.|++|+|......              ....        ...++++.+.. |+.+
T Consensus       286 ~~~----------------~~~~fD~Ii~nppfh~~~~--------------~~~~--------~~~~~l~~~~~~Lkpg  327 (375)
T 4dcm_A          286 SGV----------------EPFRFNAVLCNPPFHQQHA--------------LTDN--------VAWEMFHHARRCLKIN  327 (375)
T ss_dssp             TTC----------------CTTCEEEEEECCCC---------------------CC--------HHHHHHHHHHHHEEEE
T ss_pred             ccC----------------CCCCeeEEEECCCcccCcc--------------cCHH--------HHHHHHHHHHHhCCCC
Confidence            521                1356999999999743222              1111        22357777765 8999


Q ss_pred             cEEEe
Q 014571          402 KVLVL  406 (422)
Q Consensus       402 ~~~~~  406 (422)
                      |.+++
T Consensus       328 G~l~i  332 (375)
T 4dcm_A          328 GELYI  332 (375)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            99888

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.83  E-value=4.1e-09  Score=97.47  Aligned_cols=97  Identities=15%  Similarity=0.087  Sum_probs=76.5

Q ss_pred             hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhc
Q 014571          249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRR  327 (422)
Q Consensus       249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~  327 (422)
                      ...+...++...++.+|||+|||+|..|..+++.+++.++|+++|+++.+++.+++++++.|+ .+++++.+|+......
T Consensus        57 ~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~  136 (229)
T 2avd_A           57 QAQLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDE  136 (229)
T ss_dssp             HHHHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHH
Confidence            334455555567889999999999999999999886678999999999999999999999998 5799999999765322


Q ss_pred             cCCCCCCccccCCCCCCCCCceeecCC
Q 014571          328 KNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      ....         ...+.||.|++|++
T Consensus       137 ~~~~---------~~~~~~D~v~~d~~  154 (229)
T 2avd_A          137 LLAA---------GEAGTFDVAVVDAD  154 (229)
T ss_dssp             HHHT---------TCTTCEEEEEECSC
T ss_pred             HHhc---------CCCCCccEEEECCC
Confidence            1100         00146999999876

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=98.83  E-value=1.6e-08  Score=94.50  Aligned_cols=116  Identities=16%  Similarity=0.124  Sum_probs=85.9

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .++.+|||+|||+|..+..+|+.. +...|+|+|+++.+++.+++++++.|++|++++++|+.......-          
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~-p~~~v~giD~s~~~l~~a~~~~~~~~l~nv~~~~~Da~~~l~~~~----------  101 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDR-PEQDFLGIEVHSPGVGACLASAHEEGLSNLRVMCHDAVEVLHKMI----------  101 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHC-TTSEEEEECSCHHHHHHHHHHHHHTTCSSEEEECSCHHHHHHHHS----------
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHC-CCCeEEEEEecHHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHc----------
Confidence            478899999999999999999875 457999999999999999999999999999999999988532110          


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                        ..+.||.|++..|..-.-.     ++      + ....       .|.++++.+.. |+.+|++++.
T Consensus       102 --~~~~~d~v~~~~~~p~~~~-----~~------~-~rr~-------~~~~~l~~~~r~LkpGG~l~i~  149 (218)
T 3dxy_A          102 --PDNSLRMVQLFFPDPWHKA-----RH------N-KRRI-------VQVPFAELVKSKLQLGGVFHMA  149 (218)
T ss_dssp             --CTTCEEEEEEESCCCCCSG-----GG------G-GGSS-------CSHHHHHHHHHHEEEEEEEEEE
T ss_pred             --CCCChheEEEeCCCCccch-----hh------h-hhhh-------hhHHHHHHHHHHcCCCcEEEEE
Confidence              1356899988644321111     00      0 0001       23567777765 8999999883

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=98.81  E-value=1.7e-08  Score=93.28  Aligned_cols=93  Identities=12%  Similarity=0.117  Sum_probs=74.4

Q ss_pred             HHHhc--CCCCCCeEEEecCCCChhHHHHHhccC----CCcEEEEEcCChHHHHHHHHHHHHhC-----CcceEEEecch
Q 014571          253 TAHAL--DPQKGERILDMCAAPGGKTTAIASLLR----DEGEVVAVDRSHNKVMDIQKLAAEMG-----LKCITTYKLDA  321 (422)
Q Consensus       253 v~~~L--~p~pg~~VLD~CAgpGgKT~~la~l~~----~~g~V~A~D~s~~rl~~l~~~l~r~g-----~~nv~~~~~Da  321 (422)
                      ....+  .++++.+|||+|||+|..+.++++..+    +.++|+++|+++.+++.+++++++.|     ..++.++.+|+
T Consensus        70 ~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~  149 (227)
T 2pbf_A           70 SLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHKNI  149 (227)
T ss_dssp             HHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEECCG
T ss_pred             HHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEECCh
Confidence            34445  578999999999999999999999875    56799999999999999999999998     67899999998


Q ss_pred             hhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          322 LKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      ........           ...+.||.|++++++.
T Consensus       150 ~~~~~~~~-----------~~~~~fD~I~~~~~~~  173 (227)
T 2pbf_A          150 YQVNEEEK-----------KELGLFDAIHVGASAS  173 (227)
T ss_dssp             GGCCHHHH-----------HHHCCEEEEEECSBBS
T ss_pred             HhcccccC-----------ccCCCcCEEEECCchH
Confidence            76320000           0024589999987764

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=98.81  E-value=1.7e-08  Score=99.21  Aligned_cols=81  Identities=14%  Similarity=0.018  Sum_probs=67.8

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCC
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~  334 (422)
                      .++++++|++|||++||||+.|..++... ..++|+++|+++.+++.+++++++.|+.+|+++++|+..++         
T Consensus       116 ~la~l~~g~rVLDIGcG~G~~ta~~lA~~-~ga~V~gIDis~~~l~~Ar~~~~~~gl~~v~~v~gDa~~l~---------  185 (298)
T 3fpf_A          116 ALGRFRRGERAVFIGGGPLPLTGILLSHV-YGMRVNVVEIEPDIAELSRKVIEGLGVDGVNVITGDETVID---------  185 (298)
T ss_dssp             HHTTCCTTCEEEEECCCSSCHHHHHHHHT-TCCEEEEEESSHHHHHHHHHHHHHHTCCSEEEEESCGGGGG---------
T ss_pred             HHcCCCCcCEEEEECCCccHHHHHHHHHc-cCCEEEEEECCHHHHHHHHHHHHhcCCCCeEEEECchhhCC---------
Confidence            36789999999999999999886554432 25799999999999999999999999988999999998753         


Q ss_pred             ccccCCCCCCCCCceeecC
Q 014571          335 PNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDa  353 (422)
                              .+.||.|++++
T Consensus       186 --------d~~FDvV~~~a  196 (298)
T 3fpf_A          186 --------GLEFDVLMVAA  196 (298)
T ss_dssp             --------GCCCSEEEECT
T ss_pred             --------CCCcCEEEECC
Confidence                    24589999743

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.81  E-value=8.5e-09  Score=98.03  Aligned_cols=105  Identities=13%  Similarity=0.063  Sum_probs=82.0

Q ss_pred             EEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchh
Q 014571          244 FLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDAL  322 (422)
Q Consensus       244 ~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~  322 (422)
                      .++....++...++...++.+|||+|||+|..|..+|+.+.+.++|+++|+++.+++.+++++++.|+ .+|+++.+|+.
T Consensus        62 ~~~~~~~~ll~~l~~~~~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~  141 (247)
T 1sui_A           62 TTSADEGQFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPAL  141 (247)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHH
T ss_pred             CcCHHHHHHHHHHHHhhCcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHH
Confidence            34555566666666667788999999999999999999987678999999999999999999999998 46999999998


Q ss_pred             hhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          323 KAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      ..........        ...+.||.|++|+++.
T Consensus       142 ~~l~~l~~~~--------~~~~~fD~V~~d~~~~  167 (247)
T 1sui_A          142 PVLDEMIKDE--------KNHGSYDFIFVDADKD  167 (247)
T ss_dssp             HHHHHHHHSG--------GGTTCBSEEEECSCST
T ss_pred             HHHHHHHhcc--------CCCCCEEEEEEcCchH
Confidence            7532110000        0025699999998754

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=98.81  E-value=1.9e-08  Score=96.61  Aligned_cols=78  Identities=12%  Similarity=0.199  Sum_probs=65.1

Q ss_pred             EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchh
Q 014571          245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDAL  322 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~  322 (422)
                      +++....++...  ++||.+|||++||+|..|..+++.... ..+|+|+|+|+.+++.++++++..+. .+|+++++|..
T Consensus        56 ~~~~i~~l~~~~--~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~~~~~~v~~~~~D~~  133 (261)
T 4gek_A           56 IISMIGMLAERF--VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIR  133 (261)
T ss_dssp             HHHHHHHHHHHH--CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCTT
T ss_pred             HHHHHHHHHHHh--CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhhccCceEEEeecccc
Confidence            345555555555  478999999999999999999998754 45999999999999999999999886 47999999987


Q ss_pred             hh
Q 014571          323 KA  324 (422)
Q Consensus       323 ~~  324 (422)
                      .+
T Consensus       134 ~~  135 (261)
T 4gek_A          134 DI  135 (261)
T ss_dssp             TC
T ss_pred             cc
Confidence            64

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=98.80  E-value=1e-08  Score=92.67  Aligned_cols=121  Identities=14%  Similarity=0.095  Sum_probs=79.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhc-cCCCCCCcc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR-KNESNDEPN  336 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~-~~~~~~~~~  336 (422)
                      +++|.+|||+|||||+.|..+++.+++ .++|+|+|+++..           ...+++++++|....... ....++...
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-----------~~~~v~~~~~d~~~~~~~~~~~~~~i~~   88 (201)
T 2plw_A           20 LKKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-----------PIPNVYFIQGEIGKDNMNNIKNINYIDN   88 (201)
T ss_dssp             CCTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-----------CCTTCEEEECCTTTTSSCCC--------
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-----------CCCCceEEEccccchhhhhhcccccccc
Confidence            578999999999999999999998754 6899999999831           246789999998764310 000000000


Q ss_pred             cc--------CC-CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          337 MC--------NS-KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       337 ~~--------~~-~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                      ..        .. ...+.||.|++|.++...|.             |....   .....+|.++|+.+.. |+.+|.+++
T Consensus        89 ~~~~~~~~~~~~~~~~~~fD~v~~~~~~~~~g~-------------~~~d~---~~~~~~~~~~l~~~~~~LkpgG~lv~  152 (201)
T 2plw_A           89 MNNNSVDYKLKEILQDKKIDIILSDAAVPCIGN-------------KIDDH---LNSCELTLSITHFMEQYINIGGTYIV  152 (201)
T ss_dssp             ---CHHHHHHHHHHTTCCEEEEEECCCCCCCSC-------------HHHHH---HHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ccchhhHHHHHhhcCCCcccEEEeCCCcCCCCC-------------cccCH---HHHHHHHHHHHHHHHHHccCCCEEEE
Confidence            00        00 01357999999876554444             11111   1334567788888865 899999998

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.80  E-value=9.8e-09  Score=105.14  Aligned_cols=83  Identities=11%  Similarity=0.075  Sum_probs=70.0

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--CCcceEEEecchhhhhhccCCCCCCccc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--GLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      ++|.+|||+|||+|..+..+++.   .++|+++|+++.+++.+++|++.+  |+.+++++++|+..+....         
T Consensus        92 ~~g~~VLDLgcG~G~~al~LA~~---g~~V~~VD~s~~~l~~Ar~N~~~~~~gl~~i~~i~~Da~~~L~~~---------  159 (410)
T 3ll7_A           92 REGTKVVDLTGGLGIDFIALMSK---ASQGIYIERNDETAVAARHNIPLLLNEGKDVNILTGDFKEYLPLI---------  159 (410)
T ss_dssp             CTTCEEEESSCSSSHHHHHHHTT---CSEEEEEESCHHHHHHHHHHHHHHSCTTCEEEEEESCGGGSHHHH---------
T ss_pred             CCCCEEEEeCCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHhHHHhccCCCcEEEEECcHHHhhhhc---------
Confidence            35999999999999999999886   369999999999999999999999  9989999999998753211         


Q ss_pred             cCCCCCCCCCceeecCCcccc
Q 014571          338 CNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg~  358 (422)
                          ....||.|++|||..+.
T Consensus       160 ----~~~~fDvV~lDPPrr~~  176 (410)
T 3ll7_A          160 ----KTFHPDYIYVDPARRSG  176 (410)
T ss_dssp             ----HHHCCSEEEECCEEC--
T ss_pred             ----cCCCceEEEECCCCcCC
Confidence                02358999999999885

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=98.80  E-value=1.6e-08  Score=93.88  Aligned_cols=81  Identities=26%  Similarity=0.277  Sum_probs=65.1

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      +.+++|++|||+|||+|..|.++++..+ .++|+|+|+|+.+++.+.+++++.  .|+.++.+|+......   .     
T Consensus        53 ~~~~~g~~VLDlGcGtG~~~~~la~~~~-~~~V~gvD~s~~~l~~~~~~a~~~--~~v~~~~~d~~~~~~~---~-----  121 (210)
T 1nt2_A           53 LKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWKY---S-----  121 (210)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGGT---T-----
T ss_pred             cCCCCCCEEEEECCcCCHHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHhcC--CCeEEEEcCCCCchhh---c-----
Confidence            4578999999999999999999999876 689999999999998888877764  5788888888753210   0     


Q ss_pred             ccCCCCCCCCCceeec
Q 014571          337 MCNSKDNNYITSQTSD  352 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvD  352 (422)
                          ...+.||.|++|
T Consensus       122 ----~~~~~fD~V~~~  133 (210)
T 1nt2_A          122 ----GIVEKVDLIYQD  133 (210)
T ss_dssp             ----TTCCCEEEEEEC
T ss_pred             ----ccccceeEEEEe
Confidence                012569999987

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=98.79  E-value=1.8e-08  Score=89.36  Aligned_cols=81  Identities=21%  Similarity=0.176  Sum_probs=69.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      ..++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.++++++..|+. ++.++.+|+.......         
T Consensus        29 ~~~~~~vLDlGcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~---------   97 (177)
T 2esr_A           29 YFNGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL---------   97 (177)
T ss_dssp             CCCSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB---------
T ss_pred             hcCCCeEEEeCCCCCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh---------
Confidence            568899999999999999999986  3479999999999999999999999985 7999999998753211         


Q ss_pred             cCCCCCCCCCceeecCCc
Q 014571          338 CNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPC  355 (422)
                           .+.||.|++|+|.
T Consensus        98 -----~~~fD~i~~~~~~  110 (177)
T 2esr_A           98 -----TGRFDLVFLDPPY  110 (177)
T ss_dssp             -----CSCEEEEEECCSS
T ss_pred             -----cCCCCEEEECCCC
Confidence                 2358999999886

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=98.79  E-value=2.7e-08  Score=87.66  Aligned_cols=90  Identities=18%  Similarity=0.133  Sum_probs=75.5

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      ++.-...+...+.+.++.+|||+|||+|..+..+++   +..+|+++|+++.+++.++++++..|+++++++++|.....
T Consensus        20 ~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~---~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~   96 (183)
T 2yxd_A           20 KEEIRAVSIGKLNLNKDDVVVDVGCGSGGMTVEIAK---RCKFVYAIDYLDGAIEVTKQNLAKFNIKNCQIIKGRAEDVL   96 (183)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCCCSHHHHHHHT---TSSEEEEEECSHHHHHHHHHHHHHTTCCSEEEEESCHHHHG
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHcCCCcEEEEECCccccc
Confidence            333344556667888999999999999999999998   46799999999999999999999999988999999988632


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      .                .+.||.|+++.+
T Consensus        97 ~----------------~~~~D~i~~~~~  109 (183)
T 2yxd_A           97 D----------------KLEFNKAFIGGT  109 (183)
T ss_dssp             G----------------GCCCSEEEECSC
T ss_pred             c----------------CCCCcEEEECCc
Confidence            1                135899999988

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=98.79  E-value=4.1e-08  Score=86.57  Aligned_cols=99  Identities=16%  Similarity=0.164  Sum_probs=75.2

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEe
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYK  318 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~  318 (422)
                      +|.+..++... .+...+.++++.+|||+|||+|..+.++++.. +.++|+++|+++.+++.+++++++.|+. ++ ++.
T Consensus         5 ~g~~t~~~~~~-~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~-~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~-~~~   81 (178)
T 3hm2_A            5 DGQLTKQHVRA-LAISALAPKPHETLWDIGGGSGSIAIEWLRST-PQTTAVCFEISEERRERILSNAINLGVSDRI-AVQ   81 (178)
T ss_dssp             -CCSHHHHHHH-HHHHHHCCCTTEEEEEESTTTTHHHHHHHTTS-SSEEEEEECSCHHHHHHHHHHHHTTTCTTSE-EEE
T ss_pred             CCcccHHHHHH-HHHHHhcccCCCeEEEeCCCCCHHHHHHHHHC-CCCeEEEEeCCHHHHHHHHHHHHHhCCCCCE-EEe
Confidence            34444444443 34556688999999999999999999999886 4589999999999999999999999987 88 888


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      .|+......              ..+.||.|+++.+.
T Consensus        82 ~d~~~~~~~--------------~~~~~D~i~~~~~~  104 (178)
T 3hm2_A           82 QGAPRAFDD--------------VPDNPDVIFIGGGL  104 (178)
T ss_dssp             CCTTGGGGG--------------CCSCCSEEEECC-T
T ss_pred             cchHhhhhc--------------cCCCCCEEEECCcc
Confidence            887542210              12569999975444

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=98.79  E-value=2.1e-08  Score=94.54  Aligned_cols=117  Identities=11%  Similarity=0.068  Sum_probs=84.1

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--------CCcceEEEecchhhhhhccCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--------GLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--------g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      +.++.+|||+|||+|+.+..+|+.. +.+.|+|+|+|+.+++.++++++..        |+.|+.++.+|+.......  
T Consensus        47 ~~~~~~vLDiGcG~G~~~~~la~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~--  123 (246)
T 2vdv_E           47 MTKKVTIADIGCGFGGLMIDLSPAF-PEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNF--  123 (246)
T ss_dssp             BSCCEEEEEETCTTSHHHHHHHHHS-TTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGT--
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhC-CCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHh--
Confidence            4578899999999999999999985 4579999999999999999999987        8889999999998632210  


Q ss_pred             CCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                      .          ..+.||.|++..|..-...     ++       .....       .|.++|+.+.. |+.+|.++++
T Consensus       124 ~----------~~~~~d~v~~~~p~p~~k~-----~~-------~~~r~-------~~~~~l~~~~~~LkpgG~l~~~  172 (246)
T 2vdv_E          124 F----------EKGQLSKMFFCFPDPHFKQ-----RK-------HKARI-------ITNTLLSEYAYVLKEGGVVYTI  172 (246)
T ss_dssp             S----------CTTCEEEEEEESCCCC------------------CSSC-------CCHHHHHHHHHHEEEEEEEEEE
T ss_pred             c----------cccccCEEEEECCCccccc-----ch-------hHHhh-------ccHHHHHHHHHHcCCCCEEEEE
Confidence            0          1345788876554422111     00       00111       24677777755 8999999884

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=98.78  E-value=1.9e-08  Score=94.09  Aligned_cols=90  Identities=17%  Similarity=0.162  Sum_probs=78.3

Q ss_pred             EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      -|++.+...+..++++++.+|||++||+|..+..+++..   .+|+++|+++.+++.++++++..|++++.++++|+...
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~   81 (239)
T 1xxl_A            5 HHHHSLGLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESL   81 (239)
T ss_dssp             -CHHHHHHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBC
T ss_pred             ccCCCcchHHHHhCcCCCCEEEEEccCcCHHHHHHHHhC---CEEEEEECCHHHHHHHHHHHHHcCCCCeEEEecccccC
Confidence            478899999999999999999999999999999999873   58999999999999999999999999999999998654


Q ss_pred             hhccCCCCCCccccCCCCCCCCCceeec
Q 014571          325 VRRKNESNDEPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvD  352 (422)
                      +.               ..+.||.|++.
T Consensus        82 ~~---------------~~~~fD~v~~~   94 (239)
T 1xxl_A           82 PF---------------PDDSFDIITCR   94 (239)
T ss_dssp             CS---------------CTTCEEEEEEE
T ss_pred             CC---------------CCCcEEEEEEC
Confidence            21               13568999873

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=98.78  E-value=3.3e-08  Score=90.41  Aligned_cols=101  Identities=13%  Similarity=0.144  Sum_probs=79.7

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL  319 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~  319 (422)
                      .|....+..-.......+.+.++.+|||++||+|..+..+++..++.++|+++|+++.+++.++++++..|+.++.+..+
T Consensus        56 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~  135 (215)
T 2yxe_A           56 YGQTISAIHMVGMMCELLDLKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKLGYDNVIVIVG  135 (215)
T ss_dssp             TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHHTCTTEEEEES
T ss_pred             CCcEeCcHHHHHHHHHhhCCCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEC
Confidence            34444443334455667788999999999999999999999987656899999999999999999999999989999999


Q ss_pred             chhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          320 DALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       320 Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      |+.....               ..+.||.|+++.+.
T Consensus       136 d~~~~~~---------------~~~~fD~v~~~~~~  156 (215)
T 2yxe_A          136 DGTLGYE---------------PLAPYDRIYTTAAG  156 (215)
T ss_dssp             CGGGCCG---------------GGCCEEEEEESSBB
T ss_pred             CcccCCC---------------CCCCeeEEEECCch
Confidence            9853211               12468999986544

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=98.77  E-value=1.3e-08  Score=94.43  Aligned_cols=100  Identities=14%  Similarity=0.105  Sum_probs=77.6

Q ss_pred             ceEEEeChhHHHHHHhc--CCCCCCeEEEecCCCChhHHHHHhccCC-----CcEEEEEcCChHHHHHHHHHHHHhC---
Q 014571          241 GEIFLQNLPSIVTAHAL--DPQKGERILDMCAAPGGKTTAIASLLRD-----EGEVVAVDRSHNKVMDIQKLAAEMG---  310 (422)
Q Consensus       241 G~~~~Qd~~S~lv~~~L--~p~pg~~VLD~CAgpGgKT~~la~l~~~-----~g~V~A~D~s~~rl~~l~~~l~r~g---  310 (422)
                      |....|..-.......+  .+++|.+|||+|||+|..|.++++.++.     .++|+++|+++.+++.+++++++.|   
T Consensus        62 ~~~~~~p~~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~  141 (227)
T 1r18_A           62 GVTISAPHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSM  141 (227)
T ss_dssp             TEEECCHHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccCChHHHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccc
Confidence            33333444334455666  4789999999999999999999997643     3699999999999999999999887   


Q ss_pred             --CcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          311 --LKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       311 --~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                        ..++.++.+|+.....               ..+.||.|++++++
T Consensus       142 ~~~~~v~~~~~d~~~~~~---------------~~~~fD~I~~~~~~  173 (227)
T 1r18_A          142 LDSGQLLIVEGDGRKGYP---------------PNAPYNAIHVGAAA  173 (227)
T ss_dssp             HHHTSEEEEESCGGGCCG---------------GGCSEEEEEECSCB
T ss_pred             cCCCceEEEECCcccCCC---------------cCCCccEEEECCch
Confidence              6789999999875211               12468999998776

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=98.76  E-value=1.2e-08  Score=96.33  Aligned_cols=124  Identities=15%  Similarity=0.082  Sum_probs=87.7

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhcc-CCCcEEEEEcCChHHHHHHHHHHHHh---CCcc--------------------
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLL-RDEGEVVAVDRSHNKVMDIQKLAAEM---GLKC--------------------  313 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~-~~~g~V~A~D~s~~rl~~l~~~l~r~---g~~n--------------------  313 (422)
                      ...++.+|||+|||+|..+..+++.+ .+..+|+|+|+++.+++.+++++...   |+.+                    
T Consensus        48 ~~~~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  127 (250)
T 1o9g_A           48 PGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERREQSERFGKPSYLEA  127 (250)
T ss_dssp             SCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHCCHHHHHH
T ss_pred             ccCCCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhccccccchhhhhhhhhcccccchhh
Confidence            33467899999999999999999873 23478999999999999999998877   5533                    


Q ss_pred             ------eE-------------EEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccc
Q 014571          314 ------IT-------------TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSC  374 (422)
Q Consensus       314 ------v~-------------~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w  374 (422)
                            +.             +.++|..........          .....||.|++++|......   +          
T Consensus       128 ~~~~~~v~~~~~~~~~~~~~~~~~~D~~~~~~~~~~----------~~~~~fD~Iv~npp~~~~~~---~----------  184 (250)
T 1o9g_A          128 AQAARRLRERLTAEGGALPCAIRTADVFDPRALSAV----------LAGSAPDVVLTDLPYGERTH---W----------  184 (250)
T ss_dssp             HHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHH----------HTTCCCSEEEEECCGGGSSS---S----------
T ss_pred             hhhhhhhhhhccccccccccceeecccccccccccc----------cCCCCceEEEeCCCeecccc---c----------
Confidence                  66             888887653210000          01236999999999876544   1          


Q ss_pred             cccCcccchhHHHHHHHHHHhcc-ceeccEEEehhh
Q 014571          375 KEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTAL  409 (422)
Q Consensus       375 ~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~~  409 (422)
                      ...     .-...+..+++++.. |+.+|.++++..
T Consensus       185 ~~~-----~~~~~~~~~l~~~~~~LkpgG~l~~~~~  215 (250)
T 1o9g_A          185 EGQ-----VPGQPVAGLLRSLASALPAHAVIAVTDR  215 (250)
T ss_dssp             SSC-----CCHHHHHHHHHHHHHHSCTTCEEEEEES
T ss_pred             ccc-----ccccHHHHHHHHHHHhcCCCcEEEEeCc
Confidence            111     123456677777755 899999998544

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.76  E-value=5.7e-09  Score=103.73  Aligned_cols=123  Identities=14%  Similarity=-0.042  Sum_probs=89.5

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCC----cEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDE----GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~----g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      ++.++.+|||.|||+|+.+..+++.+...    ..|+|+|+++..++.++.|+...|+ ++.++++|+....        
T Consensus       127 ~~~~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~g~-~~~i~~~D~l~~~--------  197 (344)
T 2f8l_A          127 QKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQ-KMTLLHQDGLANL--------  197 (344)
T ss_dssp             TTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTC-CCEEEESCTTSCC--------
T ss_pred             CCCCCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhCCC-CceEEECCCCCcc--------
Confidence            67788999999999999999999887533    7999999999999999999999888 6889999976421        


Q ss_pred             CccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          334 EPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                              ....||.|+.++|......-. .      ..+|.+...  ......+..++.++.. |+.+|.+++
T Consensus       198 --------~~~~fD~Ii~NPPfg~~~~~~-~------~~~~~~~~~--~g~~~~~~~~l~~~~~~Lk~gG~~~~  254 (344)
T 2f8l_A          198 --------LVDPVDVVISDLPVGYYPDDE-N------AKTFELCRE--EGHSFAHFLFIEQGMRYTKPGGYLFF  254 (344)
T ss_dssp             --------CCCCEEEEEEECCCSEESCHH-H------HTTSTTCCS--SSCEEHHHHHHHHHHHTEEEEEEEEE
T ss_pred             --------ccCCccEEEECCCCCCcCchh-h------hhhccccCC--CCcchHHHHHHHHHHHHhCCCCEEEE
Confidence                    134699999999974322201 1      122333211  1223366777777754 788887776

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=98.74  E-value=6.6e-08  Score=90.54  Aligned_cols=111  Identities=17%  Similarity=0.136  Sum_probs=85.0

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNE  330 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~  330 (422)
                      .+...+.+.+|.+|||++||+|..+..+++..  ..+|+++|+++.+++.++++++..|+. ++.++++|+...+.    
T Consensus        27 ~l~~~~~~~~~~~VLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~----  100 (256)
T 1nkv_A           27 TLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGYVA----  100 (256)
T ss_dssp             HHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTCCC----
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc--CCeEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECChHhCCc----
Confidence            34556778999999999999999999999886  358999999999999999999999985 79999999876421    


Q ss_pred             CCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                                  .+.||.|++      .+.+.           +.+.          ..++|+++.. |+.+|.++++
T Consensus       101 ------------~~~fD~V~~------~~~~~-----------~~~~----------~~~~l~~~~r~LkpgG~l~~~  139 (256)
T 1nkv_A          101 ------------NEKCDVAAC------VGATW-----------IAGG----------FAGAEELLAQSLKPGGIMLIG  139 (256)
T ss_dssp             ------------SSCEEEEEE------ESCGG-----------GTSS----------SHHHHHHHTTSEEEEEEEEEE
T ss_pred             ------------CCCCCEEEE------CCChH-----------hcCC----------HHHHHHHHHHHcCCCeEEEEe
Confidence                        246899987      22211           1111          1345666655 7999999985

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=98.74  E-value=2.5e-08  Score=95.11  Aligned_cols=81  Identities=21%  Similarity=0.156  Sum_probs=68.8

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +.++.+|||+|||+|..+..+|... +.++|+++|+++++++.++++++++|+.||+++++|+..+....          
T Consensus        78 ~~~~~~vLDiG~G~G~~~i~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~l~~v~~~~~d~~~~~~~~----------  146 (249)
T 3g89_A           78 WQGPLRVLDLGTGAGFPGLPLKIVR-PELELVLVDATRKKVAFVERAIEVLGLKGARALWGRAEVLAREA----------  146 (249)
T ss_dssp             CCSSCEEEEETCTTTTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEECCHHHHTTST----------
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCCceEEEECcHHHhhccc----------
Confidence            3678999999999999999999875 46899999999999999999999999999999999998764210          


Q ss_pred             CCCCCCCCCceeec
Q 014571          339 NSKDNNYITSQTSD  352 (422)
Q Consensus       339 ~~~~~~~FD~VLvD  352 (422)
                        ...+.||.|++.
T Consensus       147 --~~~~~fD~I~s~  158 (249)
T 3g89_A          147 --GHREAYARAVAR  158 (249)
T ss_dssp             --TTTTCEEEEEEE
T ss_pred             --ccCCCceEEEEC
Confidence              013579999974

>3r90_A Malignant T cell-amplified sequence 1; structural genomics consortium, surface entropy reduction, S binding protein; 1.70A {Homo sapiens}

Probab=98.73  E-value=6e-09  Score=96.00  Aligned_cols=74  Identities=20%  Similarity=0.282  Sum_probs=66.4

Q ss_pred             CCCEEEEccccHHHHHcCCccccCceeeccC---CccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCC
Q 014571          122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSS---HVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERS  198 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~---~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~  198 (422)
                      ..+.|+||+++.+++++||++|+|||+.+..   ++++||.|+|..                               +.+
T Consensus        91 ~lp~v~Vd~~av~~v~~GA~Lm~PGv~~~~~~~~~i~~Gd~V~V~~-------------------------------~~~  139 (188)
T 3r90_A           91 ILPHQQVDKGAIKFVLSGANIMCPGLTSPGAKLYPAAVDTIVAIMA-------------------------------AGA  139 (188)
T ss_dssp             GSCEEEECGGGHHHHTTTCCEETHHHHSTTCBCCCCCTTCEEEEEE-------------------------------TTC
T ss_pred             cCCEEEEChhHHHHhhcCCccccCeEEccCCCcccccCCCEEEEEE-------------------------------CCC
Confidence            3578999999999999999999999999986   799999999993                               335


Q ss_pred             ceEEEEccCccCHHHHhcccCcceeecc
Q 014571          199 GLYIGQGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       199 ~v~Vrvg~a~msreel~~~~~GiaV~~~  226 (422)
                      +..+++|++.||.+++.+..+|++++..
T Consensus       140 ~~~vAVG~a~mss~e~~~~~kG~aV~v~  167 (188)
T 3r90_A          140 AHALCVGVMKMSAEDIEKVNKGIGIENI  167 (188)
T ss_dssp             SSCSEEEEESSCHHHHHHHCCSEEEEEE
T ss_pred             CcEEEEEEEEeCHHHHhhcCCcEEEEEE
Confidence            6789999999999999988999999865

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=98.72  E-value=3.4e-08  Score=93.09  Aligned_cols=88  Identities=9%  Similarity=-0.013  Sum_probs=68.8

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhh-hhccCCCCCCcccc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA-VRRKNESNDEPNMC  338 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~-~~~~~~~~~~~~~~  338 (422)
                      ++.+|||+|||+|..+..+++... .++|+++|+++.+++.++++++..|+.+ ++++++|+... ....   +.     
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~---~~-----  135 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDAL---KE-----  135 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTTS---TT-----
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHcCCCccEEEEEcchhhhhhhhh---hc-----
Confidence            578999999999999999998753 4799999999999999999999999875 99999997652 1100   00     


Q ss_pred             CCCCCCCCCceeecCCccccC
Q 014571          339 NSKDNNYITSQTSDSMKLHKE  359 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G  359 (422)
                        ...+.||.|++++|+...+
T Consensus       136 --~~~~~fD~i~~npp~~~~~  154 (254)
T 2h00_A          136 --ESEIIYDFCMCNPPFFANQ  154 (254)
T ss_dssp             --CCSCCBSEEEECCCCC---
T ss_pred             --ccCCcccEEEECCCCccCc
Confidence              0014699999999998765

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=98.71  E-value=4.6e-08  Score=85.54  Aligned_cols=81  Identities=19%  Similarity=0.097  Sum_probs=67.1

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      ++.+|||+|||+|..+..+++..   ..|+++|+++.+++.++++++..++ +++++++|+.........          
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~~~~~----------  106 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEG---WEAVLVEKDPEAVRLLKENVRRTGL-GARVVALPVEVFLPEAKA----------  106 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT---CEEEEECCCHHHHHHHHHHHHHHTC-CCEEECSCHHHHHHHHHH----------
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCC---CeEEEEeCCHHHHHHHHHHHHHcCC-ceEEEeccHHHHHHhhhc----------
Confidence            78899999999999999999873   2499999999999999999999998 899999999875321110          


Q ss_pred             CCCCCCCceeecCCcc
Q 014571          341 KDNNYITSQTSDSMKL  356 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCS  356 (422)
                       ....||.|++|+|..
T Consensus       107 -~~~~~D~i~~~~~~~  121 (171)
T 1ws6_A          107 -QGERFTVAFMAPPYA  121 (171)
T ss_dssp             -TTCCEEEEEECCCTT
T ss_pred             -cCCceEEEEECCCCc
Confidence             023689999999865

>3d79_A PUA domain, putative uncharacterized protein PH0734; unknown function; 1.73A {Pyrococcus horikoshii}

Probab=98.71  E-value=1.9e-08  Score=91.83  Aligned_cols=72  Identities=29%  Similarity=0.466  Sum_probs=66.2

Q ss_pred             CEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEE
Q 014571          124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIG  203 (422)
Q Consensus       124 k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vr  203 (422)
                      ..|+||++|++++++||++++|||+.++.++++||.|.|..                               +.++..++
T Consensus        95 ~~v~vd~gA~~~l~~GasL~~~GV~~~~g~f~~Gd~V~v~~-------------------------------~~~g~~ia  143 (179)
T 3d79_A           95 RRVVVDEGAVPHILNGADVMAPGIVDADEGIKEGDFVFVVE-------------------------------EKYGRPLA  143 (179)
T ss_dssp             TEEEECGGGHHHHHTTCCEEGGGEEEECTTCCTTCEEEEEE-------------------------------TTTCCEEE
T ss_pred             CEEEECccHHHHHhCCCCcCCCcEEEccCCccCCCEEEEEE-------------------------------CCCCeEEE
Confidence            79999999999999999999999999999999999999993                               33578999


Q ss_pred             EccCccCHHHHhcccCcceeecc
Q 014571          204 QGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       204 vg~a~msreel~~~~~GiaV~~~  226 (422)
                      +|.+.++.+|+.+..+|.+++..
T Consensus       144 vG~~~~ss~e~~~~~kG~av~~~  166 (179)
T 3d79_A          144 IGIALMSGKVMKEKNRGKAVKVI  166 (179)
T ss_dssp             EEEESSCHHHHHHCSSSEEEEEE
T ss_pred             EEEEEcCHHHHHhcCCceEEEEE
Confidence            99999999999988999998865

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=98.71  E-value=1.8e-08  Score=87.70  Aligned_cols=116  Identities=15%  Similarity=0.069  Sum_probs=82.2

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .++++.+|||+|||+|..+..+++.+++.++++++|+++ +++          ..++.+..+|.............    
T Consensus        19 ~~~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~----------~~~~~~~~~d~~~~~~~~~~~~~----   83 (180)
T 1ej0_A           19 LFKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDP----------IVGVDFLQGDFRDELVMKALLER----   83 (180)
T ss_dssp             CCCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCC----------CTTEEEEESCTTSHHHHHHHHHH----
T ss_pred             CCCCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-ccc----------cCcEEEEEcccccchhhhhhhcc----
Confidence            368899999999999999999999876668999999998 543          26789999998765310000000    


Q ss_pred             cCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          338 CNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                         ...+.||.|++|.|+...+.             +....   ......+.++++.+.. ++.+|.++++
T Consensus        84 ---~~~~~~D~i~~~~~~~~~~~-------------~~~~~---~~~~~~~~~~l~~~~~~L~~gG~l~~~  135 (180)
T 1ej0_A           84 ---VGDSKVQVVMSDMAPNMSGT-------------PAVDI---PRAMYLVELALEMCRDVLAPGGSFVVK  135 (180)
T ss_dssp             ---HTTCCEEEEEECCCCCCCSC-------------HHHHH---HHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---CCCCceeEEEECCCccccCC-------------Cccch---HHHHHHHHHHHHHHHHHcCCCcEEEEE
Confidence               01246999999999887766             11111   1234456788888765 8999999883

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=98.71  E-value=5.2e-08  Score=90.96  Aligned_cols=100  Identities=13%  Similarity=0.123  Sum_probs=80.6

Q ss_pred             ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEe
Q 014571          239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK  318 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~  318 (422)
                      ..|....|..-...+...++++++.+|||++||+|..+..+++..+  ++|+++|+++.+++.++++++..|+.++.+..
T Consensus        69 ~~~~~~~~~~~~~~~~~~l~~~~~~~vLdiG~G~G~~~~~la~~~~--~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~  146 (235)
T 1jg1_A           69 PAGQTVSAPHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVIL  146 (235)
T ss_dssp             STTCEECCHHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             CCCceeccHHHHHHHHHhcCCCCCCEEEEEeCCcCHHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Confidence            3566666655556667778899999999999999999999999864  78999999999999999999999998899999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      +|+.....               ....||.|+++.+.
T Consensus       147 ~d~~~~~~---------------~~~~fD~Ii~~~~~  168 (235)
T 1jg1_A          147 GDGSKGFP---------------PKAPYDVIIVTAGA  168 (235)
T ss_dssp             SCGGGCCG---------------GGCCEEEEEECSBB
T ss_pred             CCcccCCC---------------CCCCccEEEECCcH
Confidence            99732110               12348999987554

>1q7h_A Conserved hypothetical protein; structural genomics, MCSG, PSI, PR structure initiative; 2.10A {Thermoplasma acidophilum dsm 1728} SCOP: b.122.1.1 d.17.6.2

Probab=98.71  E-value=1.3e-08  Score=90.59  Aligned_cols=73  Identities=23%  Similarity=0.484  Sum_probs=66.8

Q ss_pred             CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571          122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY  201 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~  201 (422)
                      ....|+||.+|.+++++||++++|||+.++.++++||.|.|+.                                .++..
T Consensus        69 ~~~~v~vd~ga~~~l~~Ga~ll~~GV~~~~~~~~~gd~V~V~~--------------------------------~~g~~  116 (153)
T 1q7h_A           69 SRNIVTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFVKS--------------------------------SKGYF  116 (153)
T ss_dssp             SSSEEEECTTTHHHHTTTCCEEGGGEEEECTTCCTTCEEEEEE--------------------------------TTSCE
T ss_pred             cCCEEEECHhHHHHHHcCCCcCccccCcccCceeCCCEEEEEE--------------------------------CCCCE
Confidence            5679999999999999999999999999999999999999993                                36789


Q ss_pred             EEEccCccCHHHHhcccCcceeecc
Q 014571          202 IGQGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       202 Vrvg~a~msreel~~~~~GiaV~~~  226 (422)
                      +++|.+.+|.+|+.+..+|.+++..
T Consensus       117 ia~G~~~~ss~e~~~~~~G~~v~v~  141 (153)
T 1q7h_A          117 IAVGMAEMDAGEVMATKRGKAARII  141 (153)
T ss_dssp             EEEEEESSCHHHHHHHCCSEEEEEE
T ss_pred             EEEEEEecCHHHHHhcCCCeEEEEE
Confidence            9999999999999888899888865

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.70  E-value=2.6e-08  Score=89.55  Aligned_cols=115  Identities=17%  Similarity=0.052  Sum_probs=79.1

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCC--------cEEEEEcCChHHHHHHHHHHHHhCCcceEEE-ecchhhhhhccC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDE--------GEVVAVDRSHNKVMDIQKLAAEMGLKCITTY-KLDALKAVRRKN  329 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~--------g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~-~~Da~~~~~~~~  329 (422)
                      +++|.+|||+|||+|..+..+++.++..        ++|+++|+++.+           ...+++++ .+|.........
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-----------~~~~~~~~~~~d~~~~~~~~~   88 (196)
T 2nyu_A           20 LRPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-----------PLEGATFLCPADVTDPRTSQR   88 (196)
T ss_dssp             CCTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-----------CCTTCEEECSCCTTSHHHHHH
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-----------cCCCCeEEEeccCCCHHHHHH
Confidence            6789999999999999999999987653        899999999842           34678888 888765421100


Q ss_pred             CCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          330 ESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                      ....       ...+.||.|++|.++...|.             |.....   ....++..+++.+.. |+.+|.++++
T Consensus        89 ~~~~-------~~~~~fD~V~~~~~~~~~~~-------------~~~~~~---~~~~~~~~~l~~~~~~LkpgG~lv~~  144 (196)
T 2nyu_A           89 ILEV-------LPGRRADVILSDMAPNATGF-------------RDLDHD---RLISLCLTLLSVTPDILQPGGTFLCK  144 (196)
T ss_dssp             HHHH-------SGGGCEEEEEECCCCCCCSC-------------HHHHHH---HHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             HHHh-------cCCCCCcEEEeCCCCCCCCC-------------cccCHH---HHHHHHHHHHHHHHHHhcCCCEEEEE
Confidence            0000       01246999999986665555             222111   233456678887765 8999999984

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=98.70  E-value=7.1e-08  Score=97.82  Aligned_cols=120  Identities=21%  Similarity=0.231  Sum_probs=90.8

Q ss_pred             ChhHHHHHHhc------CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecc
Q 014571          247 NLPSIVTAHAL------DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD  320 (422)
Q Consensus       247 d~~S~lv~~~L------~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~D  320 (422)
                      |..+.+....+      ...+|.+|||+|||+|..+..+++.   ..+|+++|+++..++.+++|++..|+. ++++.+|
T Consensus       213 d~~t~~ll~~l~~~l~~~~~~~~~VLDlGcG~G~~~~~la~~---g~~V~gvDis~~al~~A~~n~~~~~~~-v~~~~~D  288 (381)
T 3dmg_A          213 DPASLLLLEALQERLGPEGVRGRQVLDLGAGYGALTLPLARM---GAEVVGVEDDLASVLSLQKGLEANALK-AQALHSD  288 (381)
T ss_dssp             CHHHHHHHHHHHHHHCTTTTTTCEEEEETCTTSTTHHHHHHT---TCEEEEEESBHHHHHHHHHHHHHTTCC-CEEEECS
T ss_pred             CHHHHHHHHHHHHhhcccCCCCCEEEEEeeeCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEcc
Confidence            34455544444      2347899999999999999999987   369999999999999999999999876 8999999


Q ss_pred             hhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ce
Q 014571          321 ALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LR  399 (422)
Q Consensus       321 a~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr  399 (422)
                      +.....               ..+.||.|++++|....+.   .                   ......++++.+.. |+
T Consensus       289 ~~~~~~---------------~~~~fD~Ii~npp~~~~~~---~-------------------~~~~~~~~l~~~~~~Lk  331 (381)
T 3dmg_A          289 VDEALT---------------EEARFDIIVTNPPFHVGGA---V-------------------ILDVAQAFVNVAAARLR  331 (381)
T ss_dssp             TTTTSC---------------TTCCEEEEEECCCCCTTCS---S-------------------CCHHHHHHHHHHHHHEE
T ss_pred             hhhccc---------------cCCCeEEEEECCchhhccc---c-------------------cHHHHHHHHHHHHHhcC
Confidence            876431               1256999999999864333   0                   01234566776654 89


Q ss_pred             eccEEEeh
Q 014571          400 IQKVLVLT  407 (422)
Q Consensus       400 ~~~~~~~t  407 (422)
                      .+|.+++.
T Consensus       332 pGG~l~iv  339 (381)
T 3dmg_A          332 PGGVFFLV  339 (381)
T ss_dssp             EEEEEEEE
T ss_pred             cCcEEEEE
Confidence            99999883

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=98.70  E-value=3.7e-08  Score=91.17  Aligned_cols=82  Identities=16%  Similarity=0.192  Sum_probs=68.2

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +.+|++|||++||+|..+..+++.+++.++|+++|.++.+++.+++++++.  .+++++++|+.......          
T Consensus        71 ~~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~~~--~~v~~~~~d~~~~~~~~----------  138 (227)
T 1g8a_A           71 IKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYR----------  138 (227)
T ss_dssp             CCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGT----------
T ss_pred             CCCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHhcc--CCCEEEEccCCCcchhh----------
Confidence            778999999999999999999998766789999999999999999998765  68999999987632100          


Q ss_pred             CCCCCCCCCceeecCC
Q 014571          339 NSKDNNYITSQTSDSM  354 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaP  354 (422)
                        ...+.||.|++|.|
T Consensus       139 --~~~~~~D~v~~~~~  152 (227)
T 1g8a_A          139 --ALVPKVDVIFEDVA  152 (227)
T ss_dssp             --TTCCCEEEEEECCC
T ss_pred             --cccCCceEEEECCC
Confidence              01246999999877

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=98.69  E-value=4.6e-08  Score=86.94  Aligned_cols=83  Identities=16%  Similarity=0.147  Sum_probs=68.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      ..++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.++++++..|+ .+++++++|+........        
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~~~~~--~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~--------  111 (187)
T 2fhp_A           42 YFDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFY--------  111 (187)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHH--------
T ss_pred             hcCCCCEEEeCCccCHHHHHHHHc--CCCEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHH--------
Confidence            458899999999999999998874  347999999999999999999999998 579999999987542110        


Q ss_pred             cCCCCCCCCCceeecCC
Q 014571          338 CNSKDNNYITSQTSDSM  354 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaP  354 (422)
                         ...+.||.|++|+|
T Consensus       112 ---~~~~~fD~i~~~~~  125 (187)
T 2fhp_A          112 ---EEKLQFDLVLLDPP  125 (187)
T ss_dssp             ---HTTCCEEEEEECCC
T ss_pred             ---hcCCCCCEEEECCC
Confidence               00246899999988

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.69  E-value=5e-08  Score=91.78  Aligned_cols=112  Identities=13%  Similarity=0.042  Sum_probs=84.2

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      ..+|.+|||++||+|.-+.++++..  ..+|+++|+|+.+++.++++.+..+. +++++.+|+.......          
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~--~~~v~~id~~~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~----------  124 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTL----------  124 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSC--EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGS----------
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhC--CcEEEEEeCCHHHHHHHHHHHhhCCC-ceEEEeehHHhhcccc----------
Confidence            5689999999999999999998863  35899999999999999999887764 6888999988764322          


Q ss_pred             CCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          339 NSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                         ..+.||.|+.|+.-+....             +         ....+..+++++.+ ||.||+++.-+
T Consensus       125 ---~~~~FD~i~~D~~~~~~~~-------------~---------~~~~~~~~~~e~~rvLkPGG~l~f~~  170 (236)
T 3orh_A          125 ---PDGHFDGILYDTYPLSEET-------------W---------HTHQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             ---CTTCEEEEEECCCCCBGGG-------------T---------TTHHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ---cccCCceEEEeeeecccch-------------h---------hhcchhhhhhhhhheeCCCCEEEEEe
Confidence               1356999999976544433             0         11123456666655 89999998743

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.69  E-value=1.2e-08  Score=98.21  Aligned_cols=94  Identities=15%  Similarity=0.051  Sum_probs=73.6

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCCh-------HHHHHHHHHHHHhCCcc-eEEEecch
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH-------NKVMDIQKLAAEMGLKC-ITTYKLDA  321 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~-------~rl~~l~~~l~r~g~~n-v~~~~~Da  321 (422)
                      ..+...++.+.+|.+|||+|||+|.-|..+|..   .++|+++|+++       ..++.+++|++..|+.+ |+++++|+
T Consensus        72 ~~~l~~a~~~~~~~~VLDlgcG~G~~a~~lA~~---g~~V~~vD~s~~~~~ll~~~l~~a~~n~~~~~~~~ri~~~~~d~  148 (258)
T 2r6z_A           72 GELIAKAVNHTAHPTVWDATAGLGRDSFVLASL---GLTVTAFEQHPAVACLLSDGIRRALLNPETQDTAARINLHFGNA  148 (258)
T ss_dssp             -CHHHHHTTGGGCCCEEETTCTTCHHHHHHHHT---TCCEEEEECCHHHHHHHHHHHHHHHHSHHHHHHHTTEEEEESCH
T ss_pred             hHHHHHHhCcCCcCeEEEeeCccCHHHHHHHHh---CCEEEEEECChhhhHHHHHHHHHHHhHHHhhCCccCeEEEECCH
Confidence            345556667778899999999999999999986   36899999999       99999999999888866 99999999


Q ss_pred             hhhhhccCCCCCCccccCCCCCCCCCceeecCCccc
Q 014571          322 LKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                      ..+......           ..+.||.|++|||-..
T Consensus       149 ~~~l~~~~~-----------~~~~fD~V~~dP~~~~  173 (258)
T 2r6z_A          149 AEQMPALVK-----------TQGKPDIVYLDPMYPE  173 (258)
T ss_dssp             HHHHHHHHH-----------HHCCCSEEEECCCC--
T ss_pred             HHHHHhhhc-----------cCCCccEEEECCCCCC
Confidence            875421100           0145899999997643

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=98.68  E-value=5.4e-08  Score=91.26  Aligned_cols=83  Identities=20%  Similarity=0.143  Sum_probs=68.9

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .+.++.+|||+|||+|..+..++... +.++|+++|+++.+++.+++++++.|+++++++++|+..+....         
T Consensus        67 ~~~~~~~vLDiG~G~G~~~~~la~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~---------  136 (240)
T 1xdz_A           67 DFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRK---------  136 (240)
T ss_dssp             CGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCT---------
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCEEEEeccHHHhcccc---------
Confidence            44678999999999999999999853 45799999999999999999999999989999999998754210         


Q ss_pred             cCCCCCCCCCceeecC
Q 014571          338 CNSKDNNYITSQTSDS  353 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDa  353 (422)
                         ...+.||.|++++
T Consensus       137 ---~~~~~fD~V~~~~  149 (240)
T 1xdz_A          137 ---DVRESYDIVTARA  149 (240)
T ss_dssp             ---TTTTCEEEEEEEC
T ss_pred             ---cccCCccEEEEec
Confidence               0135699999855

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.67  E-value=3.4e-09  Score=104.40  Aligned_cols=104  Identities=13%  Similarity=0.051  Sum_probs=72.5

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcC----ChHHHHHHHHHHHHhCCcceEEEec-chhhhhhccCCCCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR----SHNKVMDIQKLAAEMGLKCITTYKL-DALKAVRRKNESND  333 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~----s~~rl~~l~~~l~r~g~~nv~~~~~-Da~~~~~~~~~~~~  333 (422)
                      +++|.+|||+|||||+.|..+++.    ++|+|+|+    ++.++..+  ..++.|.++|.++++ |.+.++        
T Consensus        80 ~~~g~~VLDlGcG~G~~s~~la~~----~~V~gvD~~~~~~~~~~~~~--~~~~~~~~~v~~~~~~D~~~l~--------  145 (305)
T 2p41_A           80 VTPEGKVVDLGCGRGGWSYYCGGL----KNVREVKGLTKGGPGHEEPI--PMSTYGWNLVRLQSGVDVFFIP--------  145 (305)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTS----TTEEEEEEECCCSTTSCCCC--CCCSTTGGGEEEECSCCTTTSC--------
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHhc----CCEEEEeccccCchhHHHHH--HhhhcCCCCeEEEeccccccCC--------
Confidence            578999999999999999999987    58999999    55544211  122344467899888 876532        


Q ss_pred             CccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          334 EPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                               ...||.|++|.+|+ .|.             |....       ..+...|..+.. |+.+|.+++
T Consensus       146 ---------~~~fD~V~sd~~~~-~g~-------------~~~d~-------~~~l~~L~~~~~~LkpGG~~v~  189 (305)
T 2p41_A          146 ---------PERCDTLLCDIGES-SPN-------------PTVEA-------GRTLRVLNLVENWLSNNTQFCV  189 (305)
T ss_dssp             ---------CCCCSEEEECCCCC-CSS-------------HHHHH-------HHHHHHHHHHHHHCCTTCEEEE
T ss_pred             ---------cCCCCEEEECCccc-cCc-------------chhhH-------HHHHHHHHHHHHHhCCCCEEEE
Confidence                     23689999999997 666             21111       112246666644 899998887

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=98.67  E-value=5.4e-08  Score=90.61  Aligned_cols=85  Identities=21%  Similarity=0.241  Sum_probs=69.5

Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      .+.+++|++|||++||+|..+.++++..++.++|+++|+++.+++.+.+++++.  .++.++.+|+.......       
T Consensus        72 ~~~~~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~~~--~~v~~~~~d~~~~~~~~-------  142 (233)
T 2ipx_A           72 QIHIKPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAKKR--TNIIPVIEDARHPHKYR-------  142 (233)
T ss_dssp             CCCCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHC--TTEEEECSCTTCGGGGG-------
T ss_pred             eecCCCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhhcc--CCeEEEEcccCChhhhc-------
Confidence            345788999999999999999999998766689999999999999998888875  68999999987642100       


Q ss_pred             cccCCCCCCCCCceeecCC
Q 014571          336 NMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaP  354 (422)
                           ...+.||.|++|+|
T Consensus       143 -----~~~~~~D~V~~~~~  156 (233)
T 2ipx_A          143 -----MLIAMVDVIFADVA  156 (233)
T ss_dssp             -----GGCCCEEEEEECCC
T ss_pred             -----ccCCcEEEEEEcCC
Confidence                 01346999999887

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=98.67  E-value=1.4e-07  Score=89.29  Aligned_cols=110  Identities=17%  Similarity=0.071  Sum_probs=83.2

Q ss_pred             HHhcC-CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCC
Q 014571          254 AHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNES  331 (422)
Q Consensus       254 ~~~L~-p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~  331 (422)
                      ...+. +++|.+|||+|||+|..+..+++.  +.++|+++|+++.+++.++++++..|+. +++++++|....+.     
T Consensus        38 l~~l~~~~~~~~vLDiGcG~G~~~~~la~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----  110 (267)
T 3kkz_A           38 LSFIDNLTEKSLIADIGCGTGGQTMVLAGH--VTGQVTGLDFLSGFIDIFNRNARQSGLQNRVTGIVGSMDDLPF-----  110 (267)
T ss_dssp             HTTCCCCCTTCEEEEETCTTCHHHHHHHTT--CSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC-----
T ss_pred             HHhcccCCCCCEEEEeCCCCCHHHHHHHhc--cCCEEEEEeCCHHHHHHHHHHHHHcCCCcCcEEEEcChhhCCC-----
Confidence            34444 678999999999999999999987  4579999999999999999999999985 59999999876431     


Q ss_pred             CCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                                ..+.||.|++..      .+.++    +                  ..++|+.+.. |+.+|.++++.
T Consensus       111 ----------~~~~fD~i~~~~------~~~~~----~------------------~~~~l~~~~~~LkpgG~l~~~~  150 (267)
T 3kkz_A          111 ----------RNEELDLIWSEG------AIYNI----G------------------FERGLNEWRKYLKKGGYLAVSE  150 (267)
T ss_dssp             ----------CTTCEEEEEESS------CGGGT----C------------------HHHHHHHHGGGEEEEEEEEEEE
T ss_pred             ----------CCCCEEEEEEcC------Cceec----C------------------HHHHHHHHHHHcCCCCEEEEEE
Confidence                      135699998632      21111    0                  1235666654 89999999854

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=98.67  E-value=6.7e-08  Score=91.13  Aligned_cols=95  Identities=16%  Similarity=0.145  Sum_probs=74.2

Q ss_pred             ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEe
Q 014571          239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK  318 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~  318 (422)
                      .....+.|..........+.+.++.+|||++||+|..+..+++..   ++|+++|+|+.+++.++++++..|+.++.+++
T Consensus        15 ~~s~~~~~~~~~~~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~l~~a~~~~~~~~~~~v~~~~   91 (260)
T 1vl5_A           15 VTSQIHAKGSDLAKLMQIAALKGNEEVLDVATGGGHVANAFAPFV---KKVVAFDLTEDILKVARAFIEGNGHQQVEYVQ   91 (260)
T ss_dssp             --------CCCHHHHHHHHTCCSCCEEEEETCTTCHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCCSEEEEE
T ss_pred             ecCccccCHHHHHHHHHHhCCCCCCEEEEEeCCCCHHHHHHHHhC---CEEEEEeCCHHHHHHHHHHHHhcCCCceEEEE
Confidence            455556667677777888889999999999999999999999874   49999999999999999999999998999999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceee
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                      +|+...+.               ..+.||.|++
T Consensus        92 ~d~~~l~~---------------~~~~fD~V~~  109 (260)
T 1vl5_A           92 GDAEQMPF---------------TDERFHIVTC  109 (260)
T ss_dssp             CCC-CCCS---------------CTTCEEEEEE
T ss_pred             ecHHhCCC---------------CCCCEEEEEE
Confidence            99876431               1356899886

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=98.67  E-value=6.4e-08  Score=88.46  Aligned_cols=87  Identities=17%  Similarity=0.195  Sum_probs=74.0

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      ......+.+.++.+|||+|||+|..+..+++..++.++|+++|+++.+++.++++++..|+.++.++.+|+...+.    
T Consensus        27 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~----  102 (219)
T 3dh0_A           27 EKVLKEFGLKEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPL----  102 (219)
T ss_dssp             HHHHHHHTCCTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECBTTBCSS----
T ss_pred             HHHHHHhCCCCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHcCCCcEEEEecccccCCC----
Confidence            3455666888999999999999999999999876678999999999999999999999999899999999875431    


Q ss_pred             CCCCccccCCCCCCCCCceeec
Q 014571          331 SNDEPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvD  352 (422)
                                 ..+.||.|++.
T Consensus       103 -----------~~~~fD~v~~~  113 (219)
T 3dh0_A          103 -----------PDNTVDFIFMA  113 (219)
T ss_dssp             -----------CSSCEEEEEEE
T ss_pred             -----------CCCCeeEEEee
Confidence                       13568999873

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=98.65  E-value=5.1e-08  Score=95.29  Aligned_cols=110  Identities=13%  Similarity=0.053  Sum_probs=78.3

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--C--CcceEEEecchhhhhhccCCCCCCcc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--G--LKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g--~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      .+.+|||+|||+|+.+..+++.. +.++|+++|+++..++.+++++..+  +  .++++++.+|+......         
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~---------  159 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK---------  159 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG---------
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh---------
Confidence            45899999999999999999874 3579999999999999999998662  2  36799999999875421         


Q ss_pred             ccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          337 MCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                           ..+.||.|++|+|+.+.+.       +.        ..       .+.++++++.. |+.+|++++.
T Consensus       160 -----~~~~fD~Ii~d~~~~~~~~-------~~--------~l-------~~~~~l~~~~~~LkpgG~lv~~  204 (296)
T 1inl_A          160 -----FKNEFDVIIIDSTDPTAGQ-------GG--------HL-------FTEEFYQACYDALKEDGVFSAE  204 (296)
T ss_dssp             -----CSSCEEEEEEEC-------------------------C-------CSHHHHHHHHHHEEEEEEEEEE
T ss_pred             -----CCCCceEEEEcCCCcccCc-------hh--------hh-------hHHHHHHHHHHhcCCCcEEEEE
Confidence                 1356999999998752222       00        00       23456666644 7888888883

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=98.65  E-value=1.1e-07  Score=88.60  Aligned_cols=112  Identities=12%  Similarity=0.046  Sum_probs=81.5

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      ++++.+|||+|||+|..+..+++..  ..+|+++|+|+.+++.+++++++.+ .++.++++|+.......          
T Consensus        58 ~~~~~~vLDiGcGtG~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~~-~~v~~~~~d~~~~~~~~----------  124 (236)
T 1zx0_A           58 SSKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQT-HKVIPLKGLWEDVAPTL----------  124 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCS-SEEEEEESCHHHHGGGS----------
T ss_pred             CCCCCeEEEEeccCCHHHHHHHhcC--CCeEEEEcCCHHHHHHHHHHHHhcC-CCeEEEecCHHHhhccc----------
Confidence            6789999999999999999997752  3489999999999999999988877 67999999998763211          


Q ss_pred             CCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          339 NSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                         ..+.||.|++|.-.-   .   .       ..+.         ......+++++.. ||.+|++++..
T Consensus       125 ---~~~~fD~V~~d~~~~---~---~-------~~~~---------~~~~~~~l~~~~r~LkpgG~l~~~~  170 (236)
T 1zx0_A          125 ---PDGHFDGILYDTYPL---S---E-------ETWH---------THQFNFIKNHAFRLLKPGGVLTYCN  170 (236)
T ss_dssp             ---CTTCEEEEEECCCCC---B---G-------GGTT---------THHHHHHHHTHHHHEEEEEEEEECC
T ss_pred             ---CCCceEEEEECCccc---c---h-------hhhh---------hhhHHHHHHHHHHhcCCCeEEEEEe
Confidence               135699999971111   1   0       0011         1122456776655 89999999744

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.65  E-value=4.4e-08  Score=100.92  Aligned_cols=141  Identities=12%  Similarity=0.072  Sum_probs=99.1

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccC------------CCcEEEEEcCChHHHHHHHHHHH
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR------------DEGEVVAVDRSHNKVMDIQKLAA  307 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~------------~~g~V~A~D~s~~rl~~l~~~l~  307 (422)
                      .|.+|--..-+.+.+..+.|+++.+|||.|||+|+....+++.+.            ....++|+|+++..++.++.|+.
T Consensus       150 ~G~fyTP~~v~~~mv~~l~~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~  229 (445)
T 2okc_A          150 AGQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY  229 (445)
T ss_dssp             CGGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH
T ss_pred             CCcccCcHHHHHHHHHHhCCCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH
Confidence            455554334456777888999999999999999999999988652            13579999999999999999999


Q ss_pred             HhCCc--ceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhH
Q 014571          308 EMGLK--CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECG  385 (422)
Q Consensus       308 r~g~~--nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~  385 (422)
                      ..|+.  ++.+.++|+...+.                ...||.|+.+||.++...   ..+. -....+.....      
T Consensus       230 l~g~~~~~~~i~~gD~l~~~~----------------~~~fD~Iv~NPPf~~~~~---~~~~-~~~~~~~~~~~------  283 (445)
T 2okc_A          230 LHGIGTDRSPIVCEDSLEKEP----------------STLVDVILANPPFGTRPA---GSVD-INRPDFYVETK------  283 (445)
T ss_dssp             HTTCCSSCCSEEECCTTTSCC----------------SSCEEEEEECCCSSCCCT---TCCC-CCCTTSSSCCS------
T ss_pred             HhCCCcCCCCEeeCCCCCCcc----------------cCCcCEEEECCCCCCccc---ccch-hhHhhcCCCCc------
Confidence            88885  67888888765321                236999999999998765   2111 01111111111      


Q ss_pred             HHHHHHHHHhcc-ceeccEEEe
Q 014571          386 MAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       386 ~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                      ..|...+.++.. |+.+|.+++
T Consensus       284 ~~~~~fl~~~~~~Lk~gG~~a~  305 (445)
T 2okc_A          284 NNQLNFLQHMMLMLKTGGRAAV  305 (445)
T ss_dssp             CHHHHHHHHHHHHEEEEEEEEE
T ss_pred             chHHHHHHHHHHHhccCCEEEE
Confidence            135666776654 788876654

>3zv0_C H/ACA ribonucleoprotein complex subunit 4; cell cycle, RNP assembly, X-linked dyskeratosis congenita; 2.80A {Saccharomyces cerevisiae}

Probab=98.64  E-value=3.3e-08  Score=90.97  Aligned_cols=74  Identities=22%  Similarity=0.351  Sum_probs=67.7

Q ss_pred             CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571          122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY  201 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~  201 (422)
                      ..+.|+||.+|++|+++||++++|||+..+.+|+.||.|.|+                                ...+..
T Consensus        74 ~~g~VvVD~GAv~Al~~GaSLl~pGV~~v~g~F~~GD~V~V~--------------------------------~~~G~~  121 (195)
T 3zv0_C           74 GYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLI--------------------------------TTKGEA  121 (195)
T ss_dssp             TSEEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEE--------------------------------CTTCCE
T ss_pred             cCCeEEECHHHHHHHhcCCCccCCCcEecCCCcCCCCEEEEE--------------------------------cCCCCE
Confidence            568899999999999999999999999999999999999999                                234668


Q ss_pred             EEEccCccCHHHHhcccCcceeeccc
Q 014571          202 IGQGTAMMSRAGIFRASEGIAVDMHN  227 (422)
Q Consensus       202 Vrvg~a~msreel~~~~~GiaV~~~~  227 (422)
                      |++|.+.++.+++....+|++++...
T Consensus       122 IAvG~a~~sS~Ei~~~~kG~aVkv~r  147 (195)
T 3zv0_C          122 IAVAIAQMSTVDLASCDHGVVASVKR  147 (195)
T ss_dssp             EEEEEESSCHHHHHHCSSSEEEEEEE
T ss_pred             EEEEEEcCCHHHHhhcCCcEEEEEEE
Confidence            99999999999999999999998663

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.64  E-value=1.3e-07  Score=88.04  Aligned_cols=87  Identities=20%  Similarity=0.237  Sum_probs=73.5

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhcc
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRK  328 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~  328 (422)
                      ...+...+++.+|.+|||++||+|..+..+++.   .++|+++|+++.+++.++++++..|+ .++.+...|......  
T Consensus        80 ~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~--  154 (248)
T 2yvl_A           80 SFYIALKLNLNKEKRVLEFGTGSGALLAVLSEV---AGEVWTFEAVEEFYKTAQKNLKKFNLGKNVKFFNVDFKDAEV--  154 (248)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHHHHTTCCTTEEEECSCTTTSCC--
T ss_pred             HHHHHHhcCCCCCCEEEEeCCCccHHHHHHHHh---CCEEEEEecCHHHHHHHHHHHHHcCCCCcEEEEEcChhhccc--
Confidence            346667788899999999999999999999988   47999999999999999999999998 679999998765320  


Q ss_pred             CCCCCCccccCCCCCCCCCceeecCC
Q 014571          329 NESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                                   ..+.||.|++|+|
T Consensus       155 -------------~~~~~D~v~~~~~  167 (248)
T 2yvl_A          155 -------------PEGIFHAAFVDVR  167 (248)
T ss_dssp             -------------CTTCBSEEEECSS
T ss_pred             -------------CCCcccEEEECCc
Confidence                         1245899999876

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=98.63  E-value=1e-07  Score=92.51  Aligned_cols=95  Identities=13%  Similarity=0.081  Sum_probs=79.1

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKA  324 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~  324 (422)
                      +..-...++..+++.++++|||+|||+|..|..+++.   .++|+|+|+++.+++.++++++..|. .+++++++|+.+.
T Consensus        13 d~~i~~~i~~~~~~~~~~~VLDiG~G~G~lt~~L~~~---~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~D~~~~   89 (285)
T 1zq9_A           13 NPLIINSIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKT   89 (285)
T ss_dssp             CHHHHHHHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTS
T ss_pred             CHHHHHHHHHhcCCCCCCEEEEEcCcccHHHHHHHhh---CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcceecc
Confidence            4444556677788899999999999999999999987   35899999999999999999988776 6899999998764


Q ss_pred             hhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571          325 VRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      ..                 ..||.|+++.|+..+..
T Consensus        90 ~~-----------------~~fD~vv~nlpy~~~~~  108 (285)
T 1zq9_A           90 DL-----------------PFFDTCVANLPYQISSP  108 (285)
T ss_dssp             CC-----------------CCCSEEEEECCGGGHHH
T ss_pred             cc-----------------hhhcEEEEecCcccchH
Confidence            21                 24899999999987643

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.63  E-value=7.2e-08  Score=95.79  Aligned_cols=80  Identities=15%  Similarity=0.072  Sum_probs=70.2

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCcccc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      .+|++|||+|||+|+.+.+ |.   +..+|+|+|+++..++.+++|++..|+ .+++++++|+..+.             
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~---~~~~V~~vD~s~~ai~~a~~n~~~n~l~~~v~~~~~D~~~~~-------------  256 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK---NAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPILSDVREVD-------------  256 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT---TSSEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCC-------------
T ss_pred             CCCCEEEEccCccCHHHHh-cc---CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECChHHhc-------------
Confidence            5899999999999999999 76   257999999999999999999999998 57999999987642             


Q ss_pred             CCCCCCCCCceeecCCccccCch
Q 014571          339 NSKDNNYITSQTSDSMKLHKEVP  361 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~l  361 (422)
                           ..||.|++|+|..+...+
T Consensus       257 -----~~fD~Vi~dpP~~~~~~l  274 (336)
T 2yx1_A          257 -----VKGNRVIMNLPKFAHKFI  274 (336)
T ss_dssp             -----CCEEEEEECCTTTGGGGH
T ss_pred             -----CCCcEEEECCcHhHHHHH
Confidence                 348999999998876554

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=98.62  E-value=1.2e-07  Score=87.67  Aligned_cols=96  Identities=19%  Similarity=0.126  Sum_probs=76.9

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL  319 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~  319 (422)
                      .|....+..-...+...+.+.++.+|||+|||+|..+..+++..   ++|+++|+++.+++.+++++...|  ++.++.+
T Consensus        49 ~~~~~~~~~~~~~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~~~--~v~~~~~  123 (231)
T 1vbf_A           49 PGINTTALNLGIFMLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSYYN--NIKLILG  123 (231)
T ss_dssp             TTEEECCHHHHHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTTCS--SEEEEES
T ss_pred             CCCccCCHHHHHHHHHhcCCCCCCEEEEEcCCCCHHHHHHHHHc---CEEEEEeCCHHHHHHHHHHHhhcC--CeEEEEC
Confidence            45555554445566677788999999999999999999999874   799999999999999999998877  8999999


Q ss_pred             chhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          320 DALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       320 Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      |+.....               ..+.||.|+++.++
T Consensus       124 d~~~~~~---------------~~~~fD~v~~~~~~  144 (231)
T 1vbf_A          124 DGTLGYE---------------EEKPYDRVVVWATA  144 (231)
T ss_dssp             CGGGCCG---------------GGCCEEEEEESSBB
T ss_pred             Ccccccc---------------cCCCccEEEECCcH
Confidence            9875211               12468999987654

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.62  E-value=6.3e-08  Score=90.70  Aligned_cols=99  Identities=16%  Similarity=0.128  Sum_probs=76.8

Q ss_pred             ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhh
Q 014571          247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAV  325 (422)
Q Consensus       247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~  325 (422)
                      .....+...++...++.+|||+|||+|..|..+++.+++.++|+++|+++.+++.+++++++.|+. +|+++.+|+....
T Consensus        58 ~~~~~~l~~l~~~~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l  137 (232)
T 3cbg_A           58 PEQAQFLGLLISLTGAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATL  137 (232)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHH
T ss_pred             HHHHHHHHHHHHhcCCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHH
Confidence            334445555555567889999999999999999998876789999999999999999999999985 5999999987643


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      ......         ...+.||.|++|++
T Consensus       138 ~~l~~~---------~~~~~fD~V~~d~~  157 (232)
T 3cbg_A          138 EQLTQG---------KPLPEFDLIFIDAD  157 (232)
T ss_dssp             HHHHTS---------SSCCCEEEEEECSC
T ss_pred             HHHHhc---------CCCCCcCEEEECCC
Confidence            221100         00156999999976

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=98.61  E-value=2.8e-07  Score=91.44  Aligned_cols=120  Identities=16%  Similarity=0.106  Sum_probs=92.4

Q ss_pred             ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571          247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR  326 (422)
Q Consensus       247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~  326 (422)
                      |..+.+....+.+.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..++. ++++..|..... 
T Consensus       182 d~~~~~ll~~l~~~~~~~VLDlGcG~G~~~~~la~~~-~~~~v~~vD~s~~~l~~a~~~~~~~~~~-~~~~~~d~~~~~-  258 (343)
T 2pjd_A          182 DVGSQLLLSTLTPHTKGKVLDVGCGAGVLSVAFARHS-PKIRLTLCDVSAPAVEASRATLAANGVE-GEVFASNVFSEV-  258 (343)
T ss_dssp             CHHHHHHHHHSCTTCCSBCCBTTCTTSHHHHHHHHHC-TTCBCEEEESBHHHHHHHHHHHHHTTCC-CEEEECSTTTTC-
T ss_pred             cHHHHHHHHhcCcCCCCeEEEecCccCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhCCC-CEEEEccccccc-
Confidence            5667888888888888999999999999999999874 4569999999999999999999998875 567777765321 


Q ss_pred             ccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEE
Q 014571          327 RKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLV  405 (422)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~  405 (422)
                                      .+.||.|++++|... |.                     ........++++.+.. |+.+|.++
T Consensus       259 ----------------~~~fD~Iv~~~~~~~-g~---------------------~~~~~~~~~~l~~~~~~LkpgG~l~  300 (343)
T 2pjd_A          259 ----------------KGRFDMIISNPPFHD-GM---------------------QTSLDAAQTLIRGAVRHLNSGGELR  300 (343)
T ss_dssp             ----------------CSCEEEEEECCCCCS-SS---------------------HHHHHHHHHHHHHHGGGEEEEEEEE
T ss_pred             ----------------cCCeeEEEECCCccc-Cc---------------------cCCHHHHHHHHHHHHHhCCCCcEEE
Confidence                            246999999887542 11                     0011234567777755 89999998


Q ss_pred             eh
Q 014571          406 LT  407 (422)
Q Consensus       406 ~t  407 (422)
                      ++
T Consensus       301 i~  302 (343)
T 2pjd_A          301 IV  302 (343)
T ss_dssp             EE
T ss_pred             EE
Confidence            84

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=98.60  E-value=2e-07  Score=82.49  Aligned_cols=91  Identities=20%  Similarity=0.199  Sum_probs=74.4

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKA  324 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~  324 (422)
                      ++.-...+...+.+.++.+|||+|||+|..+..+++..   .+|+++|.++.+++.++++++..|+ .++.+..+|....
T Consensus        18 ~~~~~~~~~~~~~~~~~~~vldiG~G~G~~~~~l~~~~---~~v~~~D~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~   94 (192)
T 1l3i_A           18 AMEVRCLIMCLAEPGKNDVAVDVGCGTGGVTLELAGRV---RRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA   94 (192)
T ss_dssp             CHHHHHHHHHHHCCCTTCEEEEESCTTSHHHHHHHTTS---SEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred             hHHHHHHHHHhcCCCCCCEEEEECCCCCHHHHHHHHhc---CEEEEEECCHHHHHHHHHHHHHcCCCcceEEEecCHHHh
Confidence            34444556666788999999999999999999999874   7999999999999999999999998 7899999998763


Q ss_pred             hhccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          325 VRRKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                      ...               ...||.|+++.+
T Consensus        95 ~~~---------------~~~~D~v~~~~~  109 (192)
T 1l3i_A           95 LCK---------------IPDIDIAVVGGS  109 (192)
T ss_dssp             HTT---------------SCCEEEEEESCC
T ss_pred             ccc---------------CCCCCEEEECCc
Confidence            210               135899998654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.58  E-value=8.5e-08  Score=92.39  Aligned_cols=92  Identities=17%  Similarity=0.096  Sum_probs=74.2

Q ss_pred             hHHHHHHhcCCCCC--CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC--------C-cceEEE
Q 014571          249 PSIVTAHALDPQKG--ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG--------L-KCITTY  317 (422)
Q Consensus       249 ~S~lv~~~L~p~pg--~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g--------~-~nv~~~  317 (422)
                      ....+..++.+++|  .+|||++||.|.-++.+|+.   .++|+++|+++..++.+++++++.+        + .+++++
T Consensus        74 ~~e~l~~al~l~~g~~~~VLDl~~G~G~dal~lA~~---g~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~  150 (258)
T 2oyr_A           74 RGEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI  150 (258)
T ss_dssp             GGSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEE
T ss_pred             hHHHHHHHhcccCCCCCEEEEcCCcCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEE
Confidence            34556677888888  99999999999999999997   3589999999999888888887653        4 579999


Q ss_pred             ecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccc
Q 014571          318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       318 ~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                      ++|+..+....              ...||.|++|||-..
T Consensus       151 ~~D~~~~L~~~--------------~~~fDvV~lDP~y~~  176 (258)
T 2oyr_A          151 HASSLTALTDI--------------TPRPQVVYLDPMFPH  176 (258)
T ss_dssp             ESCHHHHSTTC--------------SSCCSEEEECCCCCC
T ss_pred             ECCHHHHHHhC--------------cccCCEEEEcCCCCC
Confidence            99998764211              235999999998754

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=98.58  E-value=1e-07  Score=92.85  Aligned_cols=84  Identities=14%  Similarity=0.123  Sum_probs=70.4

Q ss_pred             HHHHHhcC-CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhcc
Q 014571          251 IVTAHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRK  328 (422)
Q Consensus       251 ~lv~~~L~-p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~  328 (422)
                      ..+...+. +++|.+|||+|||+|..+..+++..  ..+|+++|+++.+++.+++++++.|+. ++.++++|+...+.  
T Consensus       106 ~~l~~~l~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--  181 (312)
T 3vc1_A          106 EFLMDHLGQAGPDDTLVDAGCGRGGSMVMAHRRF--GSRVEGVTLSAAQADFGNRRARELRIDDHVRSRVCNMLDTPF--  181 (312)
T ss_dssp             HHHHTTSCCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCC--
T ss_pred             HHHHHHhccCCCCCEEEEecCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCceEEEECChhcCCC--
Confidence            34556666 7899999999999999999999875  368999999999999999999999986 79999999875431  


Q ss_pred             CCCCCCccccCCCCCCCCCceee
Q 014571          329 NESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                                   ..+.||.|++
T Consensus       182 -------------~~~~fD~V~~  191 (312)
T 3vc1_A          182 -------------DKGAVTASWN  191 (312)
T ss_dssp             -------------CTTCEEEEEE
T ss_pred             -------------CCCCEeEEEE
Confidence                         1356898886

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.57  E-value=8.8e-08  Score=89.65  Aligned_cols=79  Identities=20%  Similarity=0.167  Sum_probs=67.6

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA  324 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~  324 (422)
                      +.....+...++...++.+|||+|||+|..+..+++.+++.++|+++|+++.+++.+++++++.|+.+ +.++.+|+...
T Consensus        45 ~~~~~~~l~~l~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~  124 (239)
T 2hnk_A           45 SPEEGQFLNILTKISGAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKENGLENKIFLKLGSALET  124 (239)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHH
T ss_pred             CHHHHHHHHHHHHhhCcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCEEEEECCHHHH
Confidence            33444555566667789999999999999999999988656899999999999999999999999866 99999998764

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=98.57  E-value=9.6e-08  Score=88.99  Aligned_cols=85  Identities=18%  Similarity=0.176  Sum_probs=67.8

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      +.++++.+|||++||+|..+.++++..+ .++|+++|+++.+++.++++++..  +|+.++.+|+.......        
T Consensus        70 ~~~~~~~~VLDlGcG~G~~~~~la~~~~-~~~v~gvD~s~~~~~~a~~~~~~~--~~v~~~~~d~~~~~~~~--------  138 (230)
T 1fbn_A           70 MPIKRDSKILYLGASAGTTPSHVADIAD-KGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQEYA--------  138 (230)
T ss_dssp             CCCCTTCEEEEESCCSSHHHHHHHHHTT-TSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGGGGT--------
T ss_pred             cCCCCCCEEEEEcccCCHHHHHHHHHcC-CcEEEEEECCHHHHHHHHHHhhcC--CCeEEEECCCCCccccc--------
Confidence            4567899999999999999999999875 689999999999999999987765  78999999987632100        


Q ss_pred             ccCCCCCCCCCceeecCCcc
Q 014571          337 MCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPCS  356 (422)
                          ...+.||.|+.|.|..
T Consensus       139 ----~~~~~~D~v~~~~~~~  154 (230)
T 1fbn_A          139 ----NIVEKVDVIYEDVAQP  154 (230)
T ss_dssp             ----TTSCCEEEEEECCCST
T ss_pred             ----ccCccEEEEEEecCCh
Confidence                0124689999776543

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=98.57  E-value=1.2e-07  Score=92.13  Aligned_cols=111  Identities=17%  Similarity=0.089  Sum_probs=84.6

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCcc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      .++++.+|||+|||+|..+..+|....+.++|+++|+++.+++.++++++..|+.+ ++++++|+...+.          
T Consensus       115 ~l~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~----------  184 (305)
T 3ocj_A          115 HLRPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGHALAGQITLHRQDAWKLDT----------  184 (305)
T ss_dssp             HCCTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEECCGGGCCC----------
T ss_pred             hCCCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhcCCCCceEEEECchhcCCc----------
Confidence            46789999999999999999987444567899999999999999999999999865 9999999886431          


Q ss_pred             ccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          337 MCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                            .+.||.|++..+-    .             +.+..       ..+.++|+.+.. |+.+|.++++.
T Consensus       185 ------~~~fD~v~~~~~~----~-------------~~~~~-------~~~~~~l~~~~~~LkpgG~l~i~~  227 (305)
T 3ocj_A          185 ------REGYDLLTSNGLN----I-------------YEPDD-------ARVTELYRRFWQALKPGGALVTSF  227 (305)
T ss_dssp             ------CSCEEEEECCSSG----G-------------GCCCH-------HHHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             ------cCCeEEEEECChh----h-------------hcCCH-------HHHHHHHHHHHHhcCCCeEEEEEe
Confidence                  2568999963211    1             11111       234567777765 89999999855

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=98.57  E-value=1.1e-07  Score=100.50  Aligned_cols=107  Identities=10%  Similarity=-0.007  Sum_probs=83.9

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCC-----------------cEEEEEcCChHHHHHH
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE-----------------GEVVAVDRSHNKVMDI  302 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~-----------------g~V~A~D~s~~rl~~l  302 (422)
                      .|.+|--..-+.+.+.+++|++|.+|+|.|||+|+....++..+...                 ..++|+|+++..++.+
T Consensus       148 ~G~fyTP~~iv~~mv~~l~p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA  227 (541)
T 2ar0_A          148 AGQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLA  227 (541)
T ss_dssp             --CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHH
T ss_pred             CCeeeCCHHHHHHHHHHhccCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHH
Confidence            45555444455667788899999999999999999999998765322                 3799999999999999


Q ss_pred             HHHHHHhCCcc-----eEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571          303 QKLAAEMGLKC-----ITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       303 ~~~l~r~g~~n-----v~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      +.|+...|+.+     +.+.++|+...+..              ....||.|+.+||.++...
T Consensus       228 ~~nl~l~gi~~~~~~~~~I~~gDtL~~~~~--------------~~~~fD~Vv~NPPf~~~~~  276 (541)
T 2ar0_A          228 LMNCLLHDIEGNLDHGGAIRLGNTLGSDGE--------------NLPKAHIVATNPPFGSAAG  276 (541)
T ss_dssp             HHHHHTTTCCCBGGGTBSEEESCTTSHHHH--------------TSCCEEEEEECCCCTTCSS
T ss_pred             HHHHHHhCCCccccccCCeEeCCCcccccc--------------cccCCeEEEECCCcccccc
Confidence            99999888875     78888987654311              1246999999999998765

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.56  E-value=1.9e-07  Score=94.74  Aligned_cols=86  Identities=12%  Similarity=0.001  Sum_probs=72.2

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCC-------------------------------------CcEEEEEcCCh
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRD-------------------------------------EGEVVAVDRSH  296 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~-------------------------------------~g~V~A~D~s~  296 (422)
                      ......+++.+|||.|||+|+.+..+|....+                                     ...|+++|+++
T Consensus       188 l~~~~~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~  267 (385)
T 3ldu_A          188 IYLTPWKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFKIYGYDIDE  267 (385)
T ss_dssp             HHTSCCCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCCEEEEESCH
T ss_pred             HHhhCCCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCceEEEEECCH
Confidence            34667789999999999999999988876432                                     25799999999


Q ss_pred             HHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          297 NKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       297 ~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      ..++.+++|++..|+. +|++.++|+.....                ...||.|++|||-
T Consensus       268 ~ai~~Ar~Na~~~gl~~~i~~~~~D~~~l~~----------------~~~~D~Iv~NPPy  311 (385)
T 3ldu_A          268 ESIDIARENAEIAGVDEYIEFNVGDATQFKS----------------EDEFGFIITNPPY  311 (385)
T ss_dssp             HHHHHHHHHHHHHTCGGGEEEEECCGGGCCC----------------SCBSCEEEECCCC
T ss_pred             HHHHHHHHHHHHcCCCCceEEEECChhhcCc----------------CCCCcEEEECCCC
Confidence            9999999999999986 69999999886531                2358999999995

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=98.54  E-value=2.1e-07  Score=87.79  Aligned_cols=116  Identities=12%  Similarity=0.055  Sum_probs=79.6

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH------hCCcceEEEecchhh-hhhccCCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE------MGLKCITTYKLDALK-AVRRKNES  331 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r------~g~~nv~~~~~Da~~-~~~~~~~~  331 (422)
                      ..++.+|||+|||.|..+..+|+.. +...|+|+|+++.+++.++++++.      .+..||.++++|+.. ++...   
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~---  119 (235)
T 3ckk_A           44 AQAQVEFADIGCGYGGLLVELSPLF-PDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFF---  119 (235)
T ss_dssp             --CCEEEEEETCTTCHHHHHHGGGS-TTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHC---
T ss_pred             cCCCCeEEEEccCCcHHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhC---
Confidence            4567899999999999999999875 457999999999999999998875      467899999999986 32111   


Q ss_pred             CCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                                ..+.||.|++..|.              .   |....-.-++  -.|..+|+.+.. |+.+|.++++
T Consensus       120 ----------~~~~~D~v~~~~~d--------------p---~~k~~h~krr--~~~~~~l~~~~~~LkpGG~l~~~  167 (235)
T 3ckk_A          120 ----------YKGQLTKMFFLFPD--------------P---HFKRTKHKWR--IISPTLLAEYAYVLRVGGLVYTI  167 (235)
T ss_dssp             ----------CTTCEEEEEEESCC------------------------------CCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----------CCcCeeEEEEeCCC--------------c---hhhhhhhhhh--hhhHHHHHHHHHHCCCCCEEEEE
Confidence                      13458988874332              1   1110000000  024567777755 8999999884

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=98.54  E-value=1.3e-07  Score=85.77  Aligned_cols=73  Identities=11%  Similarity=0.051  Sum_probs=62.3

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .+.++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.++++++     +++++++|+..++            
T Consensus        48 ~~~~~~~vlD~gcG~G~~~~~l~~~--~~~~v~~vD~~~~~~~~a~~~~~-----~~~~~~~d~~~~~------------  108 (200)
T 1ne2_A           48 GNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNCG-----GVNFMVADVSEIS------------  108 (200)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHCT-----TSEEEECCGGGCC------------
T ss_pred             CCCCCCEEEEEeCCccHHHHHHHHc--CCCEEEEEECCHHHHHHHHHhcC-----CCEEEECcHHHCC------------
Confidence            4668899999999999999999986  34689999999999999999875     6889999987531            


Q ss_pred             cCCCCCCCCCceeecCCc
Q 014571          338 CNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPC  355 (422)
                            +.||.|++|+|-
T Consensus       109 ------~~~D~v~~~~p~  120 (200)
T 1ne2_A          109 ------GKYDTWIMNPPF  120 (200)
T ss_dssp             ------CCEEEEEECCCC
T ss_pred             ------CCeeEEEECCCc
Confidence                  358999999885

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=98.53  E-value=2.8e-07  Score=85.12  Aligned_cols=113  Identities=14%  Similarity=0.036  Sum_probs=83.0

Q ss_pred             HHHHhcC-CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          252 VTAHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       252 lv~~~L~-p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      .+...+. +.++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.+++++...+  ++.++++|+...+.    
T Consensus        34 ~~~~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~~----  106 (234)
T 3dtn_A           34 VSVSIASVDTENPDILDLGAGTGLLSAFLMEKY-PEATFTLVDMSEKMLEIAKNRFRGNL--KVKYIEADYSKYDF----  106 (234)
T ss_dssp             HHHHTCCCSCSSCEEEEETCTTSHHHHHHHHHC-TTCEEEEEESCHHHHHHHHHHTCSCT--TEEEEESCTTTCCC----
T ss_pred             HHHHHhhcCCCCCeEEEecCCCCHHHHHHHHhC-CCCeEEEEECCHHHHHHHHHhhccCC--CEEEEeCchhccCC----
Confidence            3444444 6788999999999999999999986 45799999999999999999877665  89999999876431    


Q ss_pred             CCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                                  .+.||.|++..      .+.           +.+.        ....++|+++.. |+.+|.++++.
T Consensus       107 ------------~~~fD~v~~~~------~l~-----------~~~~--------~~~~~~l~~~~~~LkpgG~l~~~~  148 (234)
T 3dtn_A          107 ------------EEKYDMVVSAL------SIH-----------HLED--------EDKKELYKRSYSILKESGIFINAD  148 (234)
T ss_dssp             ------------CSCEEEEEEES------CGG-----------GSCH--------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------------CCCceEEEEeC------ccc-----------cCCH--------HHHHHHHHHHHHhcCCCcEEEEEE
Confidence                        25689999732      210           1110        022456777755 89999999844

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=98.52  E-value=3.7e-07  Score=81.69  Aligned_cols=85  Identities=15%  Similarity=0.124  Sum_probs=71.2

Q ss_pred             hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhcc
Q 014571          249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRK  328 (422)
Q Consensus       249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~  328 (422)
                      .+..+...+...++.+|||++||+|..+..+++.   ..+|+++|+++.+++.++++++..+++++.+..+|....+.  
T Consensus        20 ~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~--   94 (199)
T 2xvm_A           20 THSEVLEAVKVVKPGKTLDLGCGNGRNSLYLAAN---GYDVDAWDKNAMSIANVERIKSIENLDNLHTRVVDLNNLTF--   94 (199)
T ss_dssp             CCHHHHHHTTTSCSCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHTCTTEEEEECCGGGCCC--
T ss_pred             ccHHHHHHhhccCCCeEEEEcCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhCCCCCcEEEEcchhhCCC--
Confidence            3445666777788899999999999999999987   46999999999999999999999998889999999876421  


Q ss_pred             CCCCCCccccCCCCCCCCCceeec
Q 014571          329 NESNDEPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLvD  352 (422)
                                    .+.||.|++.
T Consensus        95 --------------~~~~D~v~~~  104 (199)
T 2xvm_A           95 --------------DRQYDFILST  104 (199)
T ss_dssp             --------------CCCEEEEEEE
T ss_pred             --------------CCCceEEEEc
Confidence                          2458999863

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=98.52  E-value=3e-07  Score=90.19  Aligned_cols=88  Identities=15%  Similarity=0.023  Sum_probs=73.3

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccC
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKN  329 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~  329 (422)
                      ...++..++++++++|||++||+|..|..+++.   .++|+|+|+++.+++.++++++  +..+++++++|+.+....  
T Consensus        39 ~~~Iv~~l~~~~~~~VLEIG~G~G~lT~~La~~---~~~V~aVEid~~li~~a~~~~~--~~~~v~vi~gD~l~~~~~--  111 (295)
T 3gru_A           39 VNKAVESANLTKDDVVLEIGLGKGILTEELAKN---AKKVYVIEIDKSLEPYANKLKE--LYNNIEIIWGDALKVDLN--  111 (295)
T ss_dssp             HHHHHHHTTCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEEESCGGGHHHHHHHHH--HCSSEEEEESCTTTSCGG--
T ss_pred             HHHHHHhcCCCCcCEEEEECCCchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHhc--cCCCeEEEECchhhCCcc--
Confidence            344566778999999999999999999999997   4699999999999999999987  456899999999875321  


Q ss_pred             CCCCCccccCCCCCCCCCceeecCCccc
Q 014571          330 ESNDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                                   ...||.|+.+.|-.-
T Consensus       112 -------------~~~fD~Iv~NlPy~i  126 (295)
T 3gru_A          112 -------------KLDFNKVVANLPYQI  126 (295)
T ss_dssp             -------------GSCCSEEEEECCGGG
T ss_pred             -------------cCCccEEEEeCcccc
Confidence                         234899999988643

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.52  E-value=2.8e-07  Score=93.86  Aligned_cols=87  Identities=13%  Similarity=0.028  Sum_probs=72.6

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCC-------------------------------------CcEEEEEcCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRD-------------------------------------EGEVVAVDRS  295 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~-------------------------------------~g~V~A~D~s  295 (422)
                      .......+++..|||.+||+|+.+..+|....+                                     ..+|+++|++
T Consensus       193 ll~l~~~~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid  272 (393)
T 3k0b_A          193 LVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDID  272 (393)
T ss_dssp             HHHHSCCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESC
T ss_pred             HHHHhCCCCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECC
Confidence            345667889999999999999998888876432                                     2569999999


Q ss_pred             hHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          296 HNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       296 ~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      +.+++.+++|+++.|+.+ |.+.++|+.....                ...||.|++|||-
T Consensus       273 ~~al~~Ar~Na~~~gl~~~I~~~~~D~~~~~~----------------~~~fD~Iv~NPPY  317 (393)
T 3k0b_A          273 ARLIEIAKQNAVEAGLGDLITFRQLQVADFQT----------------EDEYGVVVANPPY  317 (393)
T ss_dssp             HHHHHHHHHHHHHTTCTTCSEEEECCGGGCCC----------------CCCSCEEEECCCC
T ss_pred             HHHHHHHHHHHHHcCCCCceEEEECChHhCCC----------------CCCCCEEEECCCC
Confidence            999999999999999964 9999999987531                2358999999997

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=98.52  E-value=3.8e-07  Score=88.13  Aligned_cols=81  Identities=12%  Similarity=0.060  Sum_probs=70.0

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNE  330 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~  330 (422)
                      .+...+.+++|.+|||+|||+|..+..+++..+  .+|+++|+|+.+++.++++++..|+. ++.+..+|...+      
T Consensus        63 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~~--~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~------  134 (302)
T 3hem_A           63 LALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF------  134 (302)
T ss_dssp             HHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEECCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC------
T ss_pred             HHHHHcCCCCcCEEEEeeccCcHHHHHHHHhCC--CEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECCHHHc------
Confidence            356677889999999999999999999999864  68999999999999999999999986 799999998653      


Q ss_pred             CCCCccccCCCCCCCCCceeec
Q 014571          331 SNDEPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvD  352 (422)
                                  .+.||.|++.
T Consensus       135 ------------~~~fD~v~~~  144 (302)
T 3hem_A          135 ------------DEPVDRIVSL  144 (302)
T ss_dssp             ------------CCCCSEEEEE
T ss_pred             ------------CCCccEEEEc
Confidence                        2458999863

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.51  E-value=8.4e-08  Score=93.95  Aligned_cols=103  Identities=14%  Similarity=0.086  Sum_probs=72.9

Q ss_pred             cCCCCCCeEEEecC------CCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEE-EecchhhhhhccC
Q 014571          257 LDPQKGERILDMCA------APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT-YKLDALKAVRRKN  329 (422)
Q Consensus       257 L~p~pg~~VLD~CA------gpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~-~~~Da~~~~~~~~  329 (422)
                      +.+++|++|||+||      |||+  ..++++++..++|+|+|+++.             +.++++ +++|.+....   
T Consensus        59 l~l~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-------------v~~v~~~i~gD~~~~~~---  120 (290)
T 2xyq_A           59 LAVPYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-------------VSDADSTLIGDCATVHT---  120 (290)
T ss_dssp             CCCCTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-------------BCSSSEEEESCGGGCCC---
T ss_pred             cCCCCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-------------CCCCEEEEECccccCCc---
Confidence            46789999999999      7788  566777766789999999987             246888 9999876421   


Q ss_pred             CCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          330 ESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                                   .+.||.|++|.++...|.   .  ..+.     ....      ....++|+.+.. |+.+|.+++
T Consensus       121 -------------~~~fD~Vvsn~~~~~~g~---~--~~d~-----~~~~------~l~~~~l~~a~r~LkpGG~~v~  169 (290)
T 2xyq_A          121 -------------ANKWDLIISDMYDPRTKH---V--TKEN-----DSKE------GFFTYLCGFIKQKLALGGSIAV  169 (290)
T ss_dssp             -------------SSCEEEEEECCCCCC------C--CSCC-----CCCC------THHHHHHHHHHHHEEEEEEEEE
T ss_pred             -------------cCcccEEEEcCCcccccc---c--cccc-----cchH------HHHHHHHHHHHHhcCCCcEEEE
Confidence                         246999999987766665   1  1110     1111      134578887765 899999998

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.51  E-value=3.2e-07  Score=93.12  Aligned_cols=87  Identities=14%  Similarity=0.006  Sum_probs=72.5

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCC-------------------------------------CcEEEEEcCCh
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRD-------------------------------------EGEVVAVDRSH  296 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~-------------------------------------~g~V~A~D~s~  296 (422)
                      ......++++.+||.+||+|+.....|....+                                     ..+|+++|+++
T Consensus       187 l~l~~~~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~  266 (384)
T 3ldg_A          187 ILLSNWFPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDG  266 (384)
T ss_dssp             HHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCH
T ss_pred             HHHhCCCCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCH
Confidence            35567789999999999999998888865432                                     25699999999


Q ss_pred             HHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          297 NKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       297 ~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      .+++.+++|+++.|+.+ |++.++|+.....                ...||.|++|||.-
T Consensus       267 ~al~~Ar~Na~~~gl~~~I~~~~~D~~~l~~----------------~~~fD~Iv~NPPYG  311 (384)
T 3ldg_A          267 RMVEIARKNAREVGLEDVVKLKQMRLQDFKT----------------NKINGVLISNPPYG  311 (384)
T ss_dssp             HHHHHHHHHHHHTTCTTTEEEEECCGGGCCC----------------CCCSCEEEECCCCT
T ss_pred             HHHHHHHHHHHHcCCCCceEEEECChHHCCc----------------cCCcCEEEECCchh
Confidence            99999999999999965 9999999987531                23589999999973

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=98.50  E-value=3.3e-07  Score=87.67  Aligned_cols=66  Identities=20%  Similarity=0.128  Sum_probs=59.1

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAV  325 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~  325 (422)
                      +++|++|||+|||+|-.+..++.. ++.++|+|+|+++..++.+++|+++.|+.+ |++..+|+....
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~I~v~~gD~l~~~   85 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKN-QTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVI   85 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred             CCCCCEEEEECCccHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEecchhhcc
Confidence            568899999999999999999987 445799999999999999999999999965 999999987643

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=98.49  E-value=3.6e-07  Score=86.63  Aligned_cols=66  Identities=20%  Similarity=0.157  Sum_probs=59.2

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAV  325 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~  325 (422)
                      +++|++|||+|||+|-.+..++.. ++.++|+|+|+++..++.+++|+++.|+.+ |++..+|+....
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~AvDi~~~al~~A~~N~~~~gl~~~I~~~~gD~l~~~   85 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQM-GYCDFAIAGEVVNGPYQSALKNVSEHGLTSKIDVRLANGLSAF   85 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHT-TCEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGGC
T ss_pred             CCCCCEEEEECCchHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhcc
Confidence            568899999999999999999987 446799999999999999999999999965 999999987653

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=98.48  E-value=3.6e-07  Score=85.53  Aligned_cols=78  Identities=14%  Similarity=0.153  Sum_probs=66.8

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCcc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      .+.++.+|||++||+|..+..+++..+  ++|+++|+++.+++.++++++..|+.+ ++++++|+...+.          
T Consensus        43 ~~~~~~~vLDiG~G~G~~~~~l~~~~~--~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----------  110 (257)
T 3f4k_A           43 ELTDDAKIADIGCGTGGQTLFLADYVK--GQITGIDLFPDFIEIFNENAVKANCADRVKGITGSMDNLPF----------  110 (257)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHHCC--SEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCSS----------
T ss_pred             cCCCCCeEEEeCCCCCHHHHHHHHhCC--CeEEEEECCHHHHHHHHHHHHHcCCCCceEEEECChhhCCC----------
Confidence            567899999999999999999999863  499999999999999999999999866 9999999865431          


Q ss_pred             ccCCCCCCCCCceeec
Q 014571          337 MCNSKDNNYITSQTSD  352 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvD  352 (422)
                           ..+.||.|++.
T Consensus       111 -----~~~~fD~v~~~  121 (257)
T 3f4k_A          111 -----QNEELDLIWSE  121 (257)
T ss_dssp             -----CTTCEEEEEEE
T ss_pred             -----CCCCEEEEEec
Confidence                 13568999874

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=98.48  E-value=4.1e-07  Score=85.97  Aligned_cols=65  Identities=17%  Similarity=0.113  Sum_probs=58.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA  324 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~  324 (422)
                      +++|++|||+|||+|--+..+|.. ++.++|+|+|+++..++.+++|+++.|+.+ |++..+|+...
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~-~~~~~V~avDi~~~al~~A~~N~~~~gl~~~i~~~~~d~l~~   78 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVER-GQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAA   78 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHT-TSEEEEEEEESSHHHHHHHHHHHHHTTCTTTEEEEECSGGGG
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHh-CCCCEEEEEECCHHHHHHHHHHHHHcCCCceEEEEECchhhh
Confidence            468899999999999999999986 456799999999999999999999999964 99999998653

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=98.47  E-value=3.7e-07  Score=82.73  Aligned_cols=74  Identities=18%  Similarity=0.232  Sum_probs=64.3

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      ++.+|||+|||+|..+..++... +.++|+++|+++.+++.++++++..|++++.+..+|+.....              
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~--------------  129 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS--------------  129 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC--------------
T ss_pred             CCCeEEEECCCCCHHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEecchhhCCc--------------
Confidence            58899999999999999999875 457999999999999999999999999889999999875420              


Q ss_pred             CCCCCCCceee
Q 014571          341 KDNNYITSQTS  351 (422)
Q Consensus       341 ~~~~~FD~VLv  351 (422)
                        .+.||.|++
T Consensus       130 --~~~~D~i~~  138 (207)
T 1jsx_A          130 --EPPFDGVIS  138 (207)
T ss_dssp             --CSCEEEEEC
T ss_pred             --cCCcCEEEE
Confidence              245899987

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=98.46  E-value=3e-07  Score=86.09  Aligned_cols=113  Identities=14%  Similarity=0.080  Sum_probs=82.7

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      .....+.+++|.+|||+|||+|..+..+++..  ..+|+++|+++.+++.+++++...  .+++++++|....+.     
T Consensus        46 ~~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~-----  116 (266)
T 3ujc_A           46 KILSDIELNENSKVLDIGSGLGGGCMYINEKY--GAHTHGIDICSNIVNMANERVSGN--NKIIFEANDILTKEF-----  116 (266)
T ss_dssp             HHTTTCCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHTCCSC--TTEEEEECCTTTCCC-----
T ss_pred             HHHHhcCCCCCCEEEEECCCCCHHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHhhcC--CCeEEEECccccCCC-----
Confidence            34455567899999999999999999999975  469999999999999999876655  689999999876421     


Q ss_pred             CCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                                ..+.||.|++.      ..+.++          .+         .-..++|+++.. |+.+|.++++.
T Consensus       117 ----------~~~~fD~v~~~------~~l~~~----------~~---------~~~~~~l~~~~~~L~pgG~l~~~~  159 (266)
T 3ujc_A          117 ----------PENNFDLIYSR------DAILAL----------SL---------ENKNKLFQKCYKWLKPTGTLLITD  159 (266)
T ss_dssp             ----------CTTCEEEEEEE------SCGGGS----------CH---------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----------CCCcEEEEeHH------HHHHhc----------Ch---------HHHHHHHHHHHHHcCCCCEEEEEE
Confidence                      13569999862      121111          00         123456666654 79999999853

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.46  E-value=6.6e-07  Score=81.83  Aligned_cols=76  Identities=20%  Similarity=0.149  Sum_probs=62.8

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .++.+|||+|||+|..+..+++..   .+|+++|+++.+++.++++++..+ .+++++++|....+.             
T Consensus        37 ~~~~~vLDlG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~-------------   99 (227)
T 1ve3_A           37 KKRGKVLDLACGVGGFSFLLEDYG---FEVVGVDISEDMIRKAREYAKSRE-SNVEFIVGDARKLSF-------------   99 (227)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTT---CEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCTTSCCS-------------
T ss_pred             CCCCeEEEEeccCCHHHHHHHHcC---CEEEEEECCHHHHHHHHHHHHhcC-CCceEEECchhcCCC-------------
Confidence            458899999999999999998873   289999999999999999999887 679999999875321             


Q ss_pred             CCCCCCCCceeecCC
Q 014571          340 SKDNNYITSQTSDSM  354 (422)
Q Consensus       340 ~~~~~~FD~VLvDaP  354 (422)
                        ..+.||.|++..+
T Consensus       100 --~~~~~D~v~~~~~  112 (227)
T 1ve3_A          100 --EDKTFDYVIFIDS  112 (227)
T ss_dssp             --CTTCEEEEEEESC
T ss_pred             --CCCcEEEEEEcCc
Confidence              1346899997543

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.46  E-value=4.7e-08  Score=98.73  Aligned_cols=142  Identities=13%  Similarity=-0.072  Sum_probs=91.1

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL  319 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~  319 (422)
                      .|.+|--..-....+..+.+.++.+|||+|||+|+.+..+++.++....|+|+|+++..++.+         .++.++++
T Consensus        18 ~g~~~TP~~l~~~~~~~~~~~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a---------~~~~~~~~   88 (421)
T 2ih2_A           18 LGRVETPPEVVDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP---------PWAEGILA   88 (421)
T ss_dssp             ---CCCCHHHHHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------TTEEEEES
T ss_pred             CceEeCCHHHHHHHHHhhccCCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------CCCcEEeC
Confidence            455555444556666777776778999999999999999998765567999999999988665         46889999


Q ss_pred             chhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhC--CCCCccccccCcccchhHHHHHHHHHHhcc
Q 014571          320 DALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEG--LNGDKSCKEKGRTCGECGMAQEEINALVVG  397 (422)
Q Consensus       320 Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~--p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~  397 (422)
                      |.....                ..+.||.|+++||....+...++..|  .+....+............++..+++.+..
T Consensus        89 D~~~~~----------------~~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~~~~  152 (421)
T 2ih2_A           89 DFLLWE----------------PGEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVR  152 (421)
T ss_dssp             CGGGCC----------------CSSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHH
T ss_pred             ChhhcC----------------ccCCCCEEEECcCccCcccccccccccCHHHHHHHHHhhhcccCCccHHHHHHHHHHH
Confidence            987532                12469999999999877651100000  000000000000000112356677877755


Q ss_pred             -ceeccEEEe
Q 014571          398 -LRIQKVLVL  406 (422)
Q Consensus       398 -lr~~~~~~~  406 (422)
                       |+.+|.+++
T Consensus       153 ~Lk~~G~~~~  162 (421)
T 2ih2_A          153 LLKPGGVLVF  162 (421)
T ss_dssp             HEEEEEEEEE
T ss_pred             HhCCCCEEEE
Confidence             788888777

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=98.45  E-value=4.4e-07  Score=82.02  Aligned_cols=119  Identities=13%  Similarity=-0.033  Sum_probs=84.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      ..++.+|||+|||+|..+..+++.. . .+|+++|+++.+++.+++++..  ..++.++++|+...+.            
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~~-~-~~v~~~D~s~~~~~~a~~~~~~--~~~i~~~~~d~~~~~~------------  103 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLGG-F-PNVTSVDYSSVVVAAMQACYAH--VPQLRWETMDVRKLDF------------  103 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHTT-C-CCEEEEESCHHHHHHHHHHTTT--CTTCEEEECCTTSCCS------------
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHcC-C-CcEEEEeCCHHHHHHHHHhccc--CCCcEEEEcchhcCCC------------
Confidence            3788999999999999999999872 2 3899999999999999998764  4578999999876421            


Q ss_pred             CCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          339 NSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                         ..+.||.|++..+-....     ..++.   .|....    +......++|+++.. |+.+|.++++.
T Consensus       104 ---~~~~fD~v~~~~~~~~~~-----~~~~~---~~~~~~----~~~~~~~~~l~~~~~~LkpgG~li~~~  159 (215)
T 2pxx_A          104 ---PSASFDVVLEKGTLDALL-----AGERD---PWTVSS----EGVHTVDQVLSEVSRVLVPGGRFISMT  159 (215)
T ss_dssp             ---CSSCEEEEEEESHHHHHT-----TTCSC---TTSCCH----HHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---CCCcccEEEECcchhhhc-----ccccc---cccccc----chhHHHHHHHHHHHHhCcCCCEEEEEe
Confidence               135699999765432211     11222   355432    233455677777755 89999998843

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=98.45  E-value=6.2e-07  Score=85.04  Aligned_cols=84  Identities=13%  Similarity=0.170  Sum_probs=70.3

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      ........++.+|||+|||+|..+..+++.. +.++|+++|+++.+++.+++++...|++++.++..|....+.      
T Consensus        29 l~~~~~~~~~~~vLDiG~G~G~~~~~l~~~~-~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~------  101 (276)
T 3mgg_A           29 LHHDTVYPPGAKVLEAGCGIGAQTVILAKNN-PDAEITSIDISPESLEKARENTEKNGIKNVKFLQANIFSLPF------  101 (276)
T ss_dssp             HHTTCCCCTTCEEEETTCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGCCS------
T ss_pred             HhhcccCCCCCeEEEecCCCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEcccccCCC------
Confidence            3344456789999999999999999999984 457999999999999999999999999999999999886431      


Q ss_pred             CCccccCCCCCCCCCceeec
Q 014571          333 DEPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvD  352 (422)
                               ..+.||.|++.
T Consensus       102 ---------~~~~fD~v~~~  112 (276)
T 3mgg_A          102 ---------EDSSFDHIFVC  112 (276)
T ss_dssp             ---------CTTCEEEEEEE
T ss_pred             ---------CCCCeeEEEEe
Confidence                     13568999873

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=98.45  E-value=2.3e-07  Score=89.07  Aligned_cols=90  Identities=13%  Similarity=0.094  Sum_probs=74.0

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      ++..+.+.-.++...++.+|||+|||+|..+..+++..++..+|+++|+++.+++.+++++...+. +++++++|+...+
T Consensus         7 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~v~~~~~d~~~~~   85 (284)
T 3gu3_A            7 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIE   85 (284)
T ss_dssp             HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHSSSS-EEEEEESCTTTCC
T ss_pred             hHHHHHHHHHHhccCCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcchhhcC
Confidence            344555555666788999999999999999999999876568999999999999999999988776 8999999987542


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeec
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvD  352 (422)
                      .                .+.||.|++.
T Consensus        86 ~----------------~~~fD~v~~~   96 (284)
T 3gu3_A           86 L----------------NDKYDIAICH   96 (284)
T ss_dssp             C----------------SSCEEEEEEE
T ss_pred             c----------------CCCeeEEEEC
Confidence            1                2468999974

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=98.43  E-value=8.4e-07  Score=89.36  Aligned_cols=113  Identities=16%  Similarity=0.148  Sum_probs=83.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh-----C-C--cceEEEecchhhhhhccCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-----G-L--KCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~-----g-~--~nv~~~~~Da~~~~~~~~~  330 (422)
                      +.+|.+|||+|||+|..+..+++..++.++|+++|+++.+++.+++++++.     | .  .+++++++|+........ 
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~-  159 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEP-  159 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBS-
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhccc-
Confidence            568999999999999999999998866789999999999999999998876     4 3  689999999876532100 


Q ss_pred             CCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                      .+        ...+.||.|++.      ..+.           |.+.          ..++|+++.. |+.+|.++++
T Consensus       160 ~~--------~~~~~fD~V~~~------~~l~-----------~~~d----------~~~~l~~~~r~LkpgG~l~i~  202 (383)
T 4fsd_A          160 EG--------VPDSSVDIVISN------CVCN-----------LSTN----------KLALFKEIHRVLRDGGELYFS  202 (383)
T ss_dssp             CC--------CCTTCEEEEEEE------SCGG-----------GCSC----------HHHHHHHHHHHEEEEEEEEEE
T ss_pred             CC--------CCCCCEEEEEEc------cchh-----------cCCC----------HHHHHHHHHHHcCCCCEEEEE
Confidence            01        013579999974      2211           1111          1356666654 8999999985

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=98.43  E-value=4.8e-07  Score=85.63  Aligned_cols=72  Identities=18%  Similarity=0.212  Sum_probs=62.6

Q ss_pred             hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChH------HHHHHHHHHHHhCC-cceEEEecc
Q 014571          249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN------KVMDIQKLAAEMGL-KCITTYKLD  320 (422)
Q Consensus       249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~------rl~~l~~~l~r~g~-~nv~~~~~D  320 (422)
                      .-......+.+++|.+|||++||+|..+..+++..++.++|+++|+++.      +++.++++++..|+ .++.+..+|
T Consensus        31 ~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~~~~~~v~~~~~d  109 (275)
T 3bkx_A           31 HRLAIAEAWQVKPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAGPLGDRLTVHFNT  109 (275)
T ss_dssp             HHHHHHHHHTCCTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTSTTGGGEEEECSC
T ss_pred             HHHHHHHHcCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhcCCCCceEEEECC
Confidence            3344556678899999999999999999999998766689999999997      99999999998887 579999998

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=98.43  E-value=5.8e-07  Score=81.29  Aligned_cols=83  Identities=20%  Similarity=0.188  Sum_probs=68.4

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNE  330 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~  330 (422)
                      .....+.++++ +|||+|||+|..+..+++.  +..+|+++|+++.+++.++++++..|+. ++.++++|....+.    
T Consensus        35 ~~~~~~~~~~~-~vLdiG~G~G~~~~~l~~~--~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~----  107 (219)
T 3dlc_A           35 NIINRFGITAG-TCIDIGSGPGALSIALAKQ--SDFSIRALDFSKHMNEIALKNIADANLNDRIQIVQGDVHNIPI----  107 (219)
T ss_dssp             HHHHHHCCCEE-EEEEETCTTSHHHHHHHHH--SEEEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECBTTBCSS----
T ss_pred             HHHHhcCCCCC-EEEEECCCCCHHHHHHHHc--CCCeEEEEECCHHHHHHHHHHHHhccccCceEEEEcCHHHCCC----
Confidence            34455566777 9999999999999999987  4579999999999999999999999974 79999999876431    


Q ss_pred             CCCCccccCCCCCCCCCceeec
Q 014571          331 SNDEPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvD  352 (422)
                                 ..+.||.|++.
T Consensus       108 -----------~~~~~D~v~~~  118 (219)
T 3dlc_A          108 -----------EDNYADLIVSR  118 (219)
T ss_dssp             -----------CTTCEEEEEEE
T ss_pred             -----------CcccccEEEEC
Confidence                       13568999973

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=98.42  E-value=5.1e-07  Score=82.68  Aligned_cols=118  Identities=14%  Similarity=0.049  Sum_probs=84.2

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-----ceEEEecchhhhhh
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-----CITTYKLDALKAVR  326 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-----nv~~~~~Da~~~~~  326 (422)
                      .+...+...++.+|||+|||+|..+..+++.. +..+|+++|+++.+++.++++++..|+.     ++.++++|......
T Consensus        20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~   98 (217)
T 3jwh_A           20 GVVAALKQSNARRVIDLGCGQGNLLKILLKDS-FFEQITGVDVSYRSLEIAQERLDRLRLPRNQWERLQLIQGALTYQDK   98 (217)
T ss_dssp             HHHHHHHHTTCCEEEEETCTTCHHHHHHHHCT-TCSEEEEEESCHHHHHHHHHHHTTCCCCHHHHTTEEEEECCTTSCCG
T ss_pred             HHHHHHHhcCCCEEEEeCCCCCHHHHHHHhhC-CCCEEEEEECCHHHHHHHHHHHHHhcCCcccCcceEEEeCCcccccc
Confidence            44555666788999999999999999999863 3469999999999999999999888875     79999999743221


Q ss_pred             ccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEE
Q 014571          327 RKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLV  405 (422)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~  405 (422)
                                     ..+.||.|++.      ..+.           +.+.        +...++|+.+.. |+.+|+++
T Consensus        99 ---------------~~~~fD~v~~~------~~l~-----------~~~~--------~~~~~~l~~~~~~LkpgG~li  138 (217)
T 3jwh_A           99 ---------------RFHGYDAATVI------EVIE-----------HLDL--------SRLGAFERVLFEFAQPKIVIV  138 (217)
T ss_dssp             ---------------GGCSCSEEEEE------SCGG-----------GCCH--------HHHHHHHHHHHTTTCCSEEEE
T ss_pred             ---------------cCCCcCEEeeH------HHHH-----------cCCH--------HHHHHHHHHHHHHcCCCEEEE
Confidence                           13568999852      1211           1110        122456666654 78888877


Q ss_pred             ehhhH
Q 014571          406 LTALI  410 (422)
Q Consensus       406 ~t~~~  410 (422)
                      .|...
T Consensus       139 ~~~~~  143 (217)
T 3jwh_A          139 TTPNI  143 (217)
T ss_dssp             EEEBH
T ss_pred             EccCc
Confidence            76543

>2cx0_A Hypothetical protein APE0525; PUA domain, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} SCOP: b.122.1.1 d.17.6.4 PDB: 2cx1_A* 1zs7_A

Probab=98.42  E-value=1.4e-07  Score=86.72  Aligned_cols=73  Identities=26%  Similarity=0.374  Sum_probs=64.8

Q ss_pred             CCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEE
Q 014571          123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI  202 (422)
Q Consensus       123 ~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~V  202 (422)
                      +..|+||.++.+++++||++++|||+..+.+|++||.|.|..                               +.++..+
T Consensus        92 ~g~v~vd~gA~~al~~GasLl~~GV~~~~g~f~~Gd~V~I~~-------------------------------~~~g~~i  140 (187)
T 2cx0_A           92 KGVVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAALY-------------------------------HETRTPV  140 (187)
T ss_dssp             SEEEEECHHHHHHHHHTCCEEGGGEEEEEECCCTTCEEEEEE-------------------------------TTTTEEE
T ss_pred             CcEEEECccHHHHHhCCCCcCCCccEeCCCCcCCCCEEEEEE-------------------------------CCCCeEE
Confidence            449999999999999999999999999999999999999993                               3357899


Q ss_pred             EEccCccCHHHH----hcccCcceeecc
Q 014571          203 GQGTAMMSRAGI----FRASEGIAVDMH  226 (422)
Q Consensus       203 rvg~a~msreel----~~~~~GiaV~~~  226 (422)
                      ++|.+.+|.+|+    .+..+|.+++..
T Consensus       141 A~G~~~~ss~ei~~~~~~~~kG~av~v~  168 (187)
T 2cx0_A          141 MVGVAEVDSSALEKLYREKARGRAVRRV  168 (187)
T ss_dssp             EEEEESSCHHHHHHHHHHTCCSEEEEEE
T ss_pred             EEEEEecCHHHHhHHHhccCCceEEEEE
Confidence            999999999999    667889887754

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=98.40  E-value=9.2e-07  Score=83.59  Aligned_cols=84  Identities=20%  Similarity=0.211  Sum_probs=69.9

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKN  329 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~  329 (422)
                      ......+.+.++.+|||++||+|..+..+++..  ..+|+++|+|+.+++.++++++..|+. ++.++.+|+...+.   
T Consensus        51 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~---  125 (273)
T 3bus_A           51 DEMIALLDVRSGDRVLDVGCGIGKPAVRLATAR--DVRVTGISISRPQVNQANARATAAGLANRVTFSYADAMDLPF---  125 (273)
T ss_dssp             HHHHHHSCCCTTCEEEEESCTTSHHHHHHHHHS--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTSCCS---
T ss_pred             HHHHHhcCCCCCCEEEEeCCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEECccccCCC---
Confidence            345566778899999999999999999999875  479999999999999999999999975 69999999876431   


Q ss_pred             CCCCCccccCCCCCCCCCceee
Q 014571          330 ESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                                  ..+.||.|++
T Consensus       126 ------------~~~~fD~v~~  135 (273)
T 3bus_A          126 ------------EDASFDAVWA  135 (273)
T ss_dssp             ------------CTTCEEEEEE
T ss_pred             ------------CCCCccEEEE
Confidence                        1346898886

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=98.38  E-value=4.9e-07  Score=90.04  Aligned_cols=93  Identities=16%  Similarity=0.074  Sum_probs=74.8

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      ++..|.++||..++|+|+|.||.|..|++.+++.|+|+|+|+++..++.++ ++   .-.+++++.++...+....... 
T Consensus        49 vl~~L~i~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL---~~~Rv~lv~~nF~~l~~~L~~~-  123 (347)
T 3tka_A           49 AVNGLNIRPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI---DDPRFSIIHGPFSALGEYVAER-  123 (347)
T ss_dssp             HHHHTCCCTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC---CCTTEEEEESCGGGHHHHHHHT-
T ss_pred             HHHhhCCCCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh---cCCcEEEEeCCHHHHHHHHHhc-
Confidence            667888999999999999999999999999988999999999999999874 33   3467999998887764321100 


Q ss_pred             CCccccCCCCCCCCCceeecCCcccc
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                              ...+.+|.||.|-.||+.
T Consensus       124 --------g~~~~vDgILfDLGVSS~  141 (347)
T 3tka_A          124 --------DLIGKIDGILLDLGVSSP  141 (347)
T ss_dssp             --------TCTTCEEEEEEECSCCHH
T ss_pred             --------CCCCcccEEEECCccCHH
Confidence                    012358999999999986

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=98.37  E-value=7.7e-07  Score=81.46  Aligned_cols=84  Identities=11%  Similarity=0.079  Sum_probs=67.1

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-----ceEEEecchhhhhh
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-----CITTYKLDALKAVR  326 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-----nv~~~~~Da~~~~~  326 (422)
                      .+...+...++.+|||++||+|..+..+++.. +..+|+++|+++.+++.+++++...++.     +++++++|......
T Consensus        20 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~   98 (219)
T 3jwg_A           20 TVVAVLKSVNAKKVIDLGCGEGNLLSLLLKDK-SFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQSSLVYRDK   98 (219)
T ss_dssp             HHHHHHHHTTCCEEEEETCTTCHHHHHHHTST-TCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEECCSSSCCG
T ss_pred             HHHHHHhhcCCCEEEEecCCCCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEeCccccccc
Confidence            44455566788999999999999999999864 3479999999999999999999887765     79999999743321


Q ss_pred             ccCCCCCCccccCCCCCCCCCceee
Q 014571          327 RKNESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                                     ..+.||.|++
T Consensus        99 ---------------~~~~fD~V~~  108 (219)
T 3jwg_A           99 ---------------RFSGYDAATV  108 (219)
T ss_dssp             ---------------GGTTCSEEEE
T ss_pred             ---------------ccCCCCEEEE
Confidence                           1356898885

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=98.37  E-value=1.1e-06  Score=84.46  Aligned_cols=100  Identities=20%  Similarity=0.197  Sum_probs=75.5

Q ss_pred             ceEEEeCh-hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571          241 GEIFLQNL-PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL  319 (422)
Q Consensus       241 G~~~~Qd~-~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~  319 (422)
                      |.-++.|. -....+..+++.+|++|||+|||+|..|..+++.   .++|+|+|+++.+++.++++++.  ..+++++++
T Consensus         8 GQnFL~d~~i~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~---~~~V~avEid~~~~~~~~~~~~~--~~~v~~i~~   82 (255)
T 3tqs_A            8 GQHFLHDSFVLQKIVSAIHPQKTDTLVEIGPGRGALTDYLLTE---CDNLALVEIDRDLVAFLQKKYNQ--QKNITIYQN   82 (255)
T ss_dssp             -CCEECCHHHHHHHHHHHCCCTTCEEEEECCTTTTTHHHHTTT---SSEEEEEECCHHHHHHHHHHHTT--CTTEEEEES
T ss_pred             CcccccCHHHHHHHHHhcCCCCcCEEEEEcccccHHHHHHHHh---CCEEEEEECCHHHHHHHHHHHhh--CCCcEEEEc
Confidence            44344443 3344667788999999999999999999999987   26999999999999999998865  468999999


Q ss_pred             chhhhhhccCCCCCCccccCCCCCCCCCceeecCCccc
Q 014571          320 DALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       320 Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                      |+.+.+.....           ....|| |+.+.|-.-
T Consensus        83 D~~~~~~~~~~-----------~~~~~~-vv~NlPY~i  108 (255)
T 3tqs_A           83 DALQFDFSSVK-----------TDKPLR-VVGNLPYNI  108 (255)
T ss_dssp             CTTTCCGGGSC-----------CSSCEE-EEEECCHHH
T ss_pred             chHhCCHHHhc-----------cCCCeE-EEecCCccc
Confidence            99886532210           023467 888888754

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.37  E-value=3.4e-07  Score=89.17  Aligned_cols=89  Identities=13%  Similarity=0.084  Sum_probs=73.1

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      -+...|++++|..++|+++|.||.|..|++.   .|+|+|+|.++..++.+++ ++.   .++.++++|...+..-....
T Consensus        13 e~le~L~~~~gg~~VD~T~G~GGHS~~il~~---~g~VigiD~Dp~Ai~~A~~-L~~---~rv~lv~~~f~~l~~~L~~~   85 (285)
T 1wg8_A           13 EALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKG-LHL---PGLTVVQGNFRHLKRHLAAL   85 (285)
T ss_dssp             HHHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHH-TCC---TTEEEEESCGGGHHHHHHHT
T ss_pred             HHHHhhCCCCCCEEEEeCCCCcHHHHHHHHC---CCEEEEEeCCHHHHHHHHh-hcc---CCEEEEECCcchHHHHHHHc
Confidence            3567788999999999999999999999997   5899999999999999888 644   57999999998764321110


Q ss_pred             CCCccccCCCCCCCCCceeecCCccc
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                                ....||.||.|-+.|+
T Consensus        86 ----------g~~~vDgIL~DLGvSS  101 (285)
T 1wg8_A           86 ----------GVERVDGILADLGVSS  101 (285)
T ss_dssp             ----------TCSCEEEEEEECSCCH
T ss_pred             ----------CCCCcCEEEeCCcccc
Confidence                      1246899999999998

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=98.36  E-value=2.3e-06  Score=83.71  Aligned_cols=117  Identities=6%  Similarity=-0.047  Sum_probs=74.2

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc------ceEEEecchhhhhhccCCCCC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK------CITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~------nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      .+|.+|||+|||+|+-+..++..  +.+.|+|+|+|+.+++.+++++...+..      ++.+.+.|...-..... .+.
T Consensus        47 ~~~~~VLDlGCG~G~~l~~~~~~--~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~-l~~  123 (302)
T 2vdw_A           47 SNKRKVLAIDFGNGADLEKYFYG--EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSS-VRE  123 (302)
T ss_dssp             CSCCEEEETTCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHH-HHT
T ss_pred             CCCCeEEEEecCCcHhHHHHHhc--CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhh-hhc
Confidence            35889999999999877766653  3468999999999999999998887753      35666766621000000 000


Q ss_pred             CccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehhh
Q 014571          334 EPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTAL  409 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~~  409 (422)
                            ....+.||.|+|    .. ..            .|.-...   +    +..+|+++.. |+.||+++.|..
T Consensus       124 ------~~~~~~FD~V~~----~~-~l------------hy~~~~~---~----~~~~l~~~~r~LkpGG~~i~~~~  170 (302)
T 2vdw_A          124 ------VFYFGKFNIIDW----QF-AI------------HYSFHPR---H----YATVMNNLSELTASGGKVLITTM  170 (302)
T ss_dssp             ------TCCSSCEEEEEE----ES-CG------------GGTCSTT---T----HHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ------cccCCCeeEEEE----Cc-hH------------HHhCCHH---H----HHHHHHHHHHHcCCCCEEEEEeC
Confidence                  001357998875    22 22            1211111   1    2477887765 899999998543

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=98.35  E-value=2.3e-06  Score=79.00  Aligned_cols=104  Identities=18%  Similarity=0.106  Sum_probs=76.3

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .++.+|||++||+|..+..+++.    .+|+++|+++.+++.+++++...+ .++.++++|....+.             
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~----~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~-------------   93 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH----YEVTGVDLSEEMLEIAQEKAMETN-RHVDFWVQDMRELEL-------------   93 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT----SEEEEEESCHHHHHHHHHHHHHTT-CCCEEEECCGGGCCC-------------
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC----CeEEEEECCHHHHHHHHHhhhhcC-CceEEEEcChhhcCC-------------
Confidence            46789999999999999988876    689999999999999999998877 568999999876421             


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                         .+.||.|++...     .+.           +...       .....++|+++.. |+.+|.++++
T Consensus        94 ---~~~fD~v~~~~~-----~~~-----------~~~~-------~~~~~~~l~~~~~~L~pgG~l~~~  136 (243)
T 3d2l_A           94 ---PEPVDAITILCD-----SLN-----------YLQT-------EADVKQTFDSAARLLTDGGKLLFD  136 (243)
T ss_dssp             ---SSCEEEEEECTT-----GGG-----------GCCS-------HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ---CCCcCEEEEeCC-----chh-----------hcCC-------HHHHHHHHHHHHHhcCCCeEEEEE
Confidence               246899987321     111           1100       1123456666654 7999999983

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=98.35  E-value=1.4e-06  Score=79.77  Aligned_cols=108  Identities=17%  Similarity=0.102  Sum_probs=79.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-----ceEEEecchhhhhhccCCCCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-----CITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-----nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      ++++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.++++++..++.     ++.++..|....+.       
T Consensus        28 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~-------   97 (235)
T 3sm3_A           28 LQEDDEILDIGCGSGKISLELASK---GYSVTGIDINSEAIRLAETAARSPGLNQKTGGKAEFKVENASSLSF-------   97 (235)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTTCCSCCSSSSCEEEEEECCTTSCCS-------
T ss_pred             CCCCCeEEEECCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCCccccCcceEEEEecccccCC-------
Confidence            357899999999999999999987   469999999999999999999888763     68899998865421       


Q ss_pred             CccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          334 EPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                              ..+.||.|++.      ..   +.        +.+..       ....++|+.+.. |+.+|.++++.
T Consensus        98 --------~~~~~D~v~~~------~~---l~--------~~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~  141 (235)
T 3sm3_A           98 --------HDSSFDFAVMQ------AF---LT--------SVPDP-------KERSRIIKEVFRVLKPGAYLYLVE  141 (235)
T ss_dssp             --------CTTCEEEEEEE------SC---GG--------GCCCH-------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             --------CCCceeEEEEc------ch---hh--------cCCCH-------HHHHHHHHHHHHHcCCCeEEEEEE
Confidence                    13568999973      12   10        11110       122356666654 89999999854

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=98.35  E-value=3.6e-07  Score=81.40  Aligned_cols=81  Identities=14%  Similarity=0.094  Sum_probs=63.1

Q ss_pred             hhHHHHHHhcCC--CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          248 LPSIVTAHALDP--QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       248 ~~S~lv~~~L~p--~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      ..+...+..++.  .++.+|||+|||+|..+..+++..    +|+|+|+++.+++.         ..+++++++|+....
T Consensus         8 ~~~~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~----~v~gvD~s~~~~~~---------~~~~~~~~~d~~~~~   74 (170)
T 3q87_B            8 EDTYTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN----TVVSTDLNIRALES---------HRGGNLVRADLLCSI   74 (170)
T ss_dssp             HHHHHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS----EEEEEESCHHHHHT---------CSSSCEEECSTTTTB
T ss_pred             ccHHHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC----cEEEEECCHHHHhc---------ccCCeEEECChhhhc
Confidence            344445555665  778899999999999999998863    99999999999987         457889999987521


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCCccc
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                      .                .+.||.|++++|-..
T Consensus        75 ~----------------~~~fD~i~~n~~~~~   90 (170)
T 3q87_B           75 N----------------QESVDVVVFNPPYVP   90 (170)
T ss_dssp             C----------------GGGCSEEEECCCCBT
T ss_pred             c----------------cCCCCEEEECCCCcc
Confidence            1                256999999888654

>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A

Probab=98.35  E-value=5.4e-07  Score=96.04  Aligned_cols=74  Identities=20%  Similarity=0.298  Sum_probs=67.6

Q ss_pred             CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571          122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY  201 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~  201 (422)
                      ....|+||++|++||++||++++|||++++.+|++||.|.|.                                ..++..
T Consensus       506 ~~g~v~VD~gA~~av~~GasLl~~GV~~~~g~f~~Gd~V~V~--------------------------------~~~g~~  553 (582)
T 1iq8_A          506 PRMRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVV--------------------------------NENDEL  553 (582)
T ss_dssp             TTTEEEECTTTHHHHHTTCCEEGGGEEEECTTCCTTCEEEEE--------------------------------CTTCCE
T ss_pred             CCCEEEECchHHHHHhcCCCcCCCceEecCCCcCCCCEEEEE--------------------------------eCCCCE
Confidence            346999999999999999999999999999999999999999                                336789


Q ss_pred             EEEccCccCHHHHhcccCcceeeccc
Q 014571          202 IGQGTAMMSRAGIFRASEGIAVDMHN  227 (422)
Q Consensus       202 Vrvg~a~msreel~~~~~GiaV~~~~  227 (422)
                      |++|.+.+|.+|+.+..+|++|+...
T Consensus       554 ia~G~a~~ss~ei~~~~kG~aV~v~~  579 (582)
T 1iq8_A          554 LATGQALLSGREMIVFQYGRAVKVRK  579 (582)
T ss_dssp             EEEEEESSCHHHHHHCCSSEEEEEEE
T ss_pred             EEEEEEeeCHHHHHhcCCceEEEEEe
Confidence            99999999999999999999998653

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=98.33  E-value=2.2e-07  Score=87.55  Aligned_cols=87  Identities=15%  Similarity=0.062  Sum_probs=64.2

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhc---cCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhcc
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASL---LRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRK  328 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l---~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~  328 (422)
                      +...++...++.+|||+|||+|..|..+|+.   +.+.++|+++|+++.+++.++    .++ .+|+++++|+...... 
T Consensus        72 ~l~~~l~~~~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~----~~~-~~v~~~~gD~~~~~~l-  145 (236)
T 2bm8_A           72 VYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA----SDM-ENITLHQGDCSDLTTF-  145 (236)
T ss_dssp             HHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG----GGC-TTEEEEECCSSCSGGG-
T ss_pred             HHHHHHHhcCCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh----ccC-CceEEEECcchhHHHH-
Confidence            3344455556789999999999999999997   566789999999999988776    222 6799999998764100 


Q ss_pred             CCCCCCccccCCCCCCCCCceeecCC
Q 014571          329 NESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                         +.       .....||.|++|+.
T Consensus       146 ---~~-------~~~~~fD~I~~d~~  161 (236)
T 2bm8_A          146 ---EH-------LREMAHPLIFIDNA  161 (236)
T ss_dssp             ---GG-------GSSSCSSEEEEESS
T ss_pred             ---Hh-------hccCCCCEEEECCc
Confidence               00       00235999999764

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=98.33  E-value=1.1e-06  Score=84.02  Aligned_cols=79  Identities=18%  Similarity=0.130  Sum_probs=66.9

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCC
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~  334 (422)
                      ..+...++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.+++++...|+ +++++++|......        
T Consensus       114 ~~~~~~~~~~vLD~GcG~G~~~~~l~~~---g~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------  181 (286)
T 3m70_A          114 DAAKIISPCKVLDLGCGQGRNSLYLSLL---GYDVTSWDHNENSIAFLNETKEKENL-NISTALYDINAANI--------  181 (286)
T ss_dssp             HHHHHSCSCEEEEESCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CEEEEECCGGGCCC--------
T ss_pred             HHhhccCCCcEEEECCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHHcCC-ceEEEEeccccccc--------
Confidence            4444558999999999999999999987   35999999999999999999999998 89999999876431        


Q ss_pred             ccccCCCCCCCCCceeecC
Q 014571          335 PNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDa  353 (422)
                              .+.||.|++..
T Consensus       182 --------~~~fD~i~~~~  192 (286)
T 3m70_A          182 --------QENYDFIVSTV  192 (286)
T ss_dssp             --------CSCEEEEEECS
T ss_pred             --------cCCccEEEEcc
Confidence                    35689999854

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=98.32  E-value=1.7e-06  Score=83.39  Aligned_cols=84  Identities=14%  Similarity=0.120  Sum_probs=67.5

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--CCcceEEEecchhhhhhccCCCCCCcc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--GLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      ..++.+|||++||+|..+..+++.+.+..+|+++|+|+.+++.++++++..  +..++.++++|+...+.....  .   
T Consensus        34 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~--~---  108 (299)
T 3g5t_A           34 DGERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGAD--S---  108 (299)
T ss_dssp             CSCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTT--T---
T ss_pred             cCCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccc--c---
Confidence            368999999999999999999987645789999999999999999999987  347899999999875432100  0   


Q ss_pred             ccCCCCCCCCCceee
Q 014571          337 MCNSKDNNYITSQTS  351 (422)
Q Consensus       337 ~~~~~~~~~FD~VLv  351 (422)
                          ...+.||.|++
T Consensus       109 ----~~~~~fD~V~~  119 (299)
T 3g5t_A          109 ----VDKQKIDMITA  119 (299)
T ss_dssp             ----TTSSCEEEEEE
T ss_pred             ----ccCCCeeEEeH
Confidence                01257999987

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=98.32  E-value=1.1e-06  Score=80.26  Aligned_cols=105  Identities=13%  Similarity=0.018  Sum_probs=76.4

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCC
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~  334 (422)
                      ..+.++++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.+++++.    .++.++++|+...+.        
T Consensus        39 ~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~d~~~~~~--------  103 (220)
T 3hnr_A           39 EDVVNKSFGNVLEFGVGTGNLTNKLLLA---GRTVYGIEPSREMRMIAKEKLP----KEFSITEGDFLSFEV--------  103 (220)
T ss_dssp             HHHHHTCCSEEEEECCTTSHHHHHHHHT---TCEEEEECSCHHHHHHHHHHSC----TTCCEESCCSSSCCC--------
T ss_pred             HHhhccCCCeEEEeCCCCCHHHHHHHhC---CCeEEEEeCCHHHHHHHHHhCC----CceEEEeCChhhcCC--------
Confidence            3444568999999999999999999987   4699999999999999988755    578899988875421        


Q ss_pred             ccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          335 PNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                              .+.||.|++.      ..+.           +.+.        ..+.++|+.+.. |+.+|.++++
T Consensus       104 --------~~~fD~v~~~------~~l~-----------~~~~--------~~~~~~l~~~~~~LkpgG~l~i~  144 (220)
T 3hnr_A          104 --------PTSIDTIVST------YAFH-----------HLTD--------DEKNVAIAKYSQLLNKGGKIVFA  144 (220)
T ss_dssp             --------CSCCSEEEEE------SCGG-----------GSCH--------HHHHHHHHHHHHHSCTTCEEEEE
T ss_pred             --------CCCeEEEEEC------cchh-----------cCCh--------HHHHHHHHHHHHhcCCCCEEEEE
Confidence                    1569999973      2211           1111        012456666654 7999999985

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=98.32  E-value=8.1e-07  Score=81.03  Aligned_cols=118  Identities=14%  Similarity=0.045  Sum_probs=85.6

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      |..-..+....+...++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.+++++...+  +++++++|+....
T Consensus        36 ~~~~~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~--~~~~~~~d~~~~~  110 (216)
T 3ofk_A           36 RERHTQLLRLSLSSGAVSNGLEIGCAAGAFTEKLAPH---CKRLTVIDVMPRAIGRACQRTKRWS--HISWAATDILQFS  110 (216)
T ss_dssp             HHHHHHHHHHHTTTSSEEEEEEECCTTSHHHHHHGGG---EEEEEEEESCHHHHHHHHHHTTTCS--SEEEEECCTTTCC
T ss_pred             HHHHHHHHHHHcccCCCCcEEEEcCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHhcccCC--CeEEEEcchhhCC
Confidence            3334455666777889999999999999999999987   3699999999999999999887654  7999999987643


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEE
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVL  404 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~  404 (422)
                                      ..+.||.|++.      ..+.           +.+.      . ....++|+++.. |+.+|.+
T Consensus       111 ----------------~~~~fD~v~~~------~~l~-----------~~~~------~-~~~~~~l~~~~~~L~pgG~l  150 (216)
T 3ofk_A          111 ----------------TAELFDLIVVA------EVLY-----------YLED------M-TQMRTAIDNMVKMLAPGGHL  150 (216)
T ss_dssp             ----------------CSCCEEEEEEE------SCGG-----------GSSS------H-HHHHHHHHHHHHTEEEEEEE
T ss_pred             ----------------CCCCccEEEEc------cHHH-----------hCCC------H-HHHHHHHHHHHHHcCCCCEE
Confidence                            13568999973      2211           1111      0 122355666644 8999999


Q ss_pred             Eehh
Q 014571          405 VLTA  408 (422)
Q Consensus       405 ~~t~  408 (422)
                      +++.
T Consensus       151 ~~~~  154 (216)
T 3ofk_A          151 VFGS  154 (216)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9843

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=98.31  E-value=1.6e-06  Score=83.20  Aligned_cols=83  Identities=18%  Similarity=0.084  Sum_probs=68.7

Q ss_pred             HHHHhc----CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhh
Q 014571          252 VTAHAL----DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVR  326 (422)
Q Consensus       252 lv~~~L----~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~  326 (422)
                      .+...+    .+.++.+|||++||+|..+..+++..  ..+|+++|+++.+++.++++++..|+ .++.++.+|+...+.
T Consensus        69 ~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~  146 (297)
T 2o57_A           69 WLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPC  146 (297)
T ss_dssp             HHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSS
T ss_pred             HHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh--CCEEEEEeCCHHHHHHHHHHHHhcCCCcceEEEEcCcccCCC
Confidence            344455    77899999999999999999999875  35999999999999999999999998 479999999876431


Q ss_pred             ccCCCCCCccccCCCCCCCCCceee
Q 014571          327 RKNESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                      .               .+.||.|++
T Consensus       147 ~---------------~~~fD~v~~  156 (297)
T 2o57_A          147 E---------------DNSYDFIWS  156 (297)
T ss_dssp             C---------------TTCEEEEEE
T ss_pred             C---------------CCCEeEEEe
Confidence            1               246888886

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=98.29  E-value=2.1e-06  Score=83.36  Aligned_cols=71  Identities=14%  Similarity=0.141  Sum_probs=61.3

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhh
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKA  324 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~  324 (422)
                      .+...+.+++|.+|||++||+|..+..+++..  ..+|+++|+++.+++.++++++..|+. ++.+..+|...+
T Consensus        81 ~~~~~~~~~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~  152 (318)
T 2fk8_A           81 LNLDKLDLKPGMTLLDIGCGWGTTMRRAVERF--DVNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWEDF  152 (318)
T ss_dssp             HHHTTSCCCTTCEEEEESCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGGC
T ss_pred             HHHHhcCCCCcCEEEEEcccchHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChHHC
Confidence            34556678899999999999999999999876  359999999999999999999998885 599999997653

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=98.29  E-value=2.4e-06  Score=81.56  Aligned_cols=69  Identities=19%  Similarity=0.139  Sum_probs=59.9

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhh
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK  323 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~  323 (422)
                      +...+.+.+|.+|||++||+|..+..+++..+  .+|+++|+|+.+++.+++++++.|+ .++.+..+|...
T Consensus        56 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~--~~v~gvd~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~  125 (287)
T 1kpg_A           56 ALGKLGLQPGMTLLDVGCGWGATMMRAVEKYD--VNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQ  125 (287)
T ss_dssp             HHTTTTCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGG
T ss_pred             HHHHcCCCCcCEEEEECCcccHHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCCCCeEEEECChhh
Confidence            44556778999999999999999999996653  4999999999999999999999887 479999999864

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=98.28  E-value=2.4e-06  Score=79.73  Aligned_cols=63  Identities=25%  Similarity=0.255  Sum_probs=56.0

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      ...++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.++++++..|. ++.++++|....
T Consensus        38 ~~~~~~~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~-~v~~~~~d~~~~  100 (252)
T 1wzn_A           38 AKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEI  100 (252)
T ss_dssp             CSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGC
T ss_pred             cccCCCEEEEeCCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEECChhhc
Confidence            4567889999999999999999986   36899999999999999999998886 689999998764

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=98.28  E-value=1.7e-06  Score=88.60  Aligned_cols=73  Identities=11%  Similarity=0.054  Sum_probs=60.5

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHH-------HHhCC--cceEEEecchhh
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA-------AEMGL--KCITTYKLDALK  323 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l-------~r~g~--~nv~~~~~Da~~  323 (422)
                      +...+.+++|++|||+|||+|.-+..+|...+ ..+|+|+|+++.+++.+++++       +.+|+  .+|+++++|+..
T Consensus       165 il~~l~l~~gd~VLDLGCGtG~l~l~lA~~~g-~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVefi~GD~~~  243 (438)
T 3uwp_A          165 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  243 (438)
T ss_dssp             HHHHHCCCTTCEEEEESCTTSHHHHHHHHHCC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEEEECCTTS
T ss_pred             HHHhcCCCCCCEEEEeCCCCCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEECcccC
Confidence            44566899999999999999999999998753 457999999999988888764       45676  689999999987


Q ss_pred             hhh
Q 014571          324 AVR  326 (422)
Q Consensus       324 ~~~  326 (422)
                      .+.
T Consensus       244 lp~  246 (438)
T 3uwp_A          244 EEW  246 (438)
T ss_dssp             HHH
T ss_pred             Ccc
Confidence            654

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=98.28  E-value=1.5e-07  Score=91.38  Aligned_cols=73  Identities=16%  Similarity=0.071  Sum_probs=53.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHH---HHhCCcceEEE--ecchhhhhhccCCCCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA---AEMGLKCITTY--KLDALKAVRRKNESND  333 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l---~r~g~~nv~~~--~~Da~~~~~~~~~~~~  333 (422)
                      +++|.+|||+|||||+.|..+++.    ++|+|+|+++ ++..++++.   +.+| .++.++  ++|++.++        
T Consensus        80 ~~~g~~VLDlGcGtG~~s~~la~~----~~V~gVD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~--------  145 (276)
T 2wa2_A           80 VELKGTVVDLGCGRGSWSYYAASQ----PNVREVKAYT-LGTSGHEKPRLVETFG-WNLITFKSKVDVTKME--------  145 (276)
T ss_dssp             CCCCEEEEEESCTTCHHHHHHHTS----TTEEEEEEEC-CCCTTSCCCCCCCCTT-GGGEEEECSCCGGGCC--------
T ss_pred             CCCCCEEEEeccCCCHHHHHHHHc----CCEEEEECch-hhhhhhhchhhhhhcC-CCeEEEeccCcHhhCC--------
Confidence            578999999999999999999987    6899999998 432221110   0111 178888  88887632        


Q ss_pred             CccccCCCCCCCCCceeecCC
Q 014571          334 EPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaP  354 (422)
                               .+.||.|++|..
T Consensus       146 ---------~~~fD~Vvsd~~  157 (276)
T 2wa2_A          146 ---------PFQADTVLCDIG  157 (276)
T ss_dssp             ---------CCCCSEEEECCC
T ss_pred             ---------CCCcCEEEECCC
Confidence                     245899999866

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=98.27  E-value=1.3e-07  Score=91.17  Aligned_cols=74  Identities=16%  Similarity=0.113  Sum_probs=53.2

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH---HHHhCCcceEEE--ecchhhhhhccCCCC
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL---AAEMGLKCITTY--KLDALKAVRRKNESN  332 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~---l~r~g~~nv~~~--~~Da~~~~~~~~~~~  332 (422)
                      .+++|.+|||+|||||+.|..+++.    ++|+|+|+++ ++..++++   .+.+| .++.++  ++|++.++       
T Consensus        71 ~~~~g~~VLDlGcGtG~~s~~la~~----~~V~gvD~s~-m~~~a~~~~~~~~~~~-~~v~~~~~~~D~~~l~-------  137 (265)
T 2oxt_A           71 YVELTGRVVDLGCGRGGWSYYAASR----PHVMDVRAYT-LGVGGHEVPRITESYG-WNIVKFKSRVDIHTLP-------  137 (265)
T ss_dssp             SCCCCEEEEEESCTTSHHHHHHHTS----TTEEEEEEEC-CCCSSCCCCCCCCBTT-GGGEEEECSCCTTTSC-------
T ss_pred             CCCCCCEEEEeCcCCCHHHHHHHHc----CcEEEEECch-hhhhhhhhhhhhhccC-CCeEEEecccCHhHCC-------
Confidence            3678999999999999999999886    6899999998 43221111   01111 168888  88887632       


Q ss_pred             CCccccCCCCCCCCCceeecCC
Q 014571          333 DEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                                .+.||.|++|..
T Consensus       138 ----------~~~fD~V~sd~~  149 (265)
T 2oxt_A          138 ----------VERTDVIMCDVG  149 (265)
T ss_dssp             ----------CCCCSEEEECCC
T ss_pred             ----------CCCCcEEEEeCc
Confidence                      246899999866

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=98.25  E-value=1.9e-06  Score=81.60  Aligned_cols=94  Identities=11%  Similarity=0.021  Sum_probs=72.8

Q ss_pred             EeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          245 LQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       245 ~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      .+..-...++..+++.++++|||+|||+|..|..+++..   ++|+|+|+++.+++.++++++.  ..+++++++|+.+.
T Consensus        14 ~d~~~~~~i~~~~~~~~~~~VLDiG~G~G~lt~~l~~~~---~~v~~vD~~~~~~~~a~~~~~~--~~~v~~~~~D~~~~   88 (244)
T 1qam_A           14 TSKHNIDKIMTNIRLNEHDNIFEIGSGKGHFTLELVQRC---NFVTAIEIDHKLCKTTENKLVD--HDNFQVLNKDILQF   88 (244)
T ss_dssp             CCHHHHHHHHTTCCCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEECSCHHHHHHHHHHTTT--CCSEEEECCCGGGC
T ss_pred             CCHHHHHHHHHhCCCCCCCEEEEEeCCchHHHHHHHHcC---CeEEEEECCHHHHHHHHHhhcc--CCCeEEEEChHHhC
Confidence            333344456667788899999999999999999999873   7999999999999999998764  36899999999875


Q ss_pred             hhccCCCCCCccccCCCCCCCCCceeecCCcccc
Q 014571          325 VRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                      +...              ...| .|+.+.|-.-+
T Consensus        89 ~~~~--------------~~~~-~vv~nlPy~~~  107 (244)
T 1qam_A           89 KFPK--------------NQSY-KIFGNIPYNIS  107 (244)
T ss_dssp             CCCS--------------SCCC-EEEEECCGGGH
T ss_pred             Cccc--------------CCCe-EEEEeCCcccC
Confidence            4210              1234 58888887643

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=98.25  E-value=2.6e-06  Score=80.99  Aligned_cols=83  Identities=17%  Similarity=0.165  Sum_probs=66.6

Q ss_pred             HHHHHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhcc
Q 014571          251 IVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRK  328 (422)
Q Consensus       251 ~lv~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~  328 (422)
                      .++...+.  +++|.+|||++||+|..+..++.+ +  .+|+++|+++.+++.+++|+++.|+. +.+..+|......  
T Consensus       108 ~~~~~~l~~~~~~~~~VLDiGcG~G~l~~~la~~-g--~~v~gvDi~~~~v~~a~~n~~~~~~~-v~~~~~d~~~~~~--  181 (254)
T 2nxc_A          108 RLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL-G--GKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAALP--  181 (254)
T ss_dssp             HHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT-T--CEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHHGG--
T ss_pred             HHHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHh-C--CeEEEEECCHHHHHHHHHHHHHcCCc-EEEEECChhhcCc--
Confidence            34444443  578999999999999999988875 2  29999999999999999999999987 8999999876311  


Q ss_pred             CCCCCCccccCCCCCCCCCceeecC
Q 014571          329 NESNDEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLvDa  353 (422)
                                    .+.||.|+++.
T Consensus       182 --------------~~~fD~Vv~n~  192 (254)
T 2nxc_A          182 --------------FGPFDLLVANL  192 (254)
T ss_dssp             --------------GCCEEEEEEEC
T ss_pred             --------------CCCCCEEEECC
Confidence                          23589999864

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.24  E-value=1.7e-06  Score=83.70  Aligned_cols=78  Identities=21%  Similarity=0.279  Sum_probs=65.0

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--C---------CcceEEEecchhhhhhcc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--G---------LKCITTYKLDALKAVRRK  328 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g---------~~nv~~~~~Da~~~~~~~  328 (422)
                      .++.+|||+|||+|+.+..+++.  +.++|+++|+++..++.+++++ ++  +         -++++++.+|+...... 
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~--~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-  149 (281)
T 1mjf_A           74 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-  149 (281)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhC--CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-
Confidence            45689999999999999999987  4579999999999999999988 54  3         35799999999875432 


Q ss_pred             CCCCCCccccCCCCCCCCCceeecCCc
Q 014571          329 NESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                                    .+.||.|++|+|+
T Consensus       150 --------------~~~fD~Ii~d~~~  162 (281)
T 1mjf_A          150 --------------NRGFDVIIADSTD  162 (281)
T ss_dssp             --------------CCCEEEEEEECCC
T ss_pred             --------------cCCeeEEEECCCC
Confidence                          1358999999986

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.24  E-value=2e-06  Score=91.10  Aligned_cols=108  Identities=9%  Similarity=0.002  Sum_probs=83.5

Q ss_pred             cceEEEeChhHHHHHHhcC----CCCCCeEEEecCCCChhHHHHHhccC--CCcEEEEEcCChHHHHHHHHHHHHhCC--
Q 014571          240 EGEIFLQNLPSIVTAHALD----PQKGERILDMCAAPGGKTTAIASLLR--DEGEVVAVDRSHNKVMDIQKLAAEMGL--  311 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~----p~pg~~VLD~CAgpGgKT~~la~l~~--~~g~V~A~D~s~~rl~~l~~~l~r~g~--  311 (422)
                      .|.||-=..-+.+.+.++.    ++++.+|+|.|||+|+....+++.+.  +...++|+|+++..+..++.|+...|+  
T Consensus       196 ~G~fyTP~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~l~gi~~  275 (542)
T 3lkd_A          196 AGEFYTPQPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMILHGVPI  275 (542)
T ss_dssp             CSSCCCCHHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHHHTTCCG
T ss_pred             CCeecccHHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHHHcCCCc
Confidence            4555443444566666666    67899999999999999999988864  356899999999999999999999998  


Q ss_pred             cceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccC
Q 014571          312 KCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKE  359 (422)
Q Consensus       312 ~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G  359 (422)
                      .++.+.++|+......            ......||.|+.+||-++..
T Consensus       276 ~~~~I~~gDtL~~d~p------------~~~~~~fD~IvaNPPf~~~~  311 (542)
T 3lkd_A          276 ENQFLHNADTLDEDWP------------TQEPTNFDGVLMNPPYSAKW  311 (542)
T ss_dssp             GGEEEEESCTTTSCSC------------CSSCCCBSEEEECCCTTCCC
T ss_pred             CccceEecceeccccc------------ccccccccEEEecCCcCCcc
Confidence            5789999997653110            01135799999999999643

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=98.24  E-value=6.2e-07  Score=82.14  Aligned_cols=66  Identities=17%  Similarity=0.092  Sum_probs=54.9

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH------------hCCcceEEEecchhhh
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE------------MGLKCITTYKLDALKA  324 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r------------~g~~nv~~~~~Da~~~  324 (422)
                      +.+.++.+|||++||+|.-+..+++.   ..+|+|+|+|+.+++.++++++.            .+..+++++++|+..+
T Consensus        18 l~~~~~~~vLD~GCG~G~~~~~la~~---g~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l   94 (203)
T 1pjz_A           18 LNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFAL   94 (203)
T ss_dssp             HCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSS
T ss_pred             cccCCCCEEEEeCCCCcHhHHHHHHC---CCeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccC
Confidence            45678999999999999999999987   35899999999999999987643            1235799999998765


Q ss_pred             h
Q 014571          325 V  325 (422)
Q Consensus       325 ~  325 (422)
                      +
T Consensus        95 ~   95 (203)
T 1pjz_A           95 T   95 (203)
T ss_dssp             T
T ss_pred             C
Confidence            4

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.23  E-value=2.8e-06  Score=92.51  Aligned_cols=89  Identities=16%  Similarity=0.029  Sum_probs=72.1

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccC-----------------------------------------CCcEEEEE
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLR-----------------------------------------DEGEVVAV  292 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~-----------------------------------------~~g~V~A~  292 (422)
                      +....+++++.|||.|||+|+..+.+|....                                         ....|+|+
T Consensus       183 l~~~~~~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~  262 (703)
T 3v97_A          183 VMRSGWQPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGS  262 (703)
T ss_dssp             HHHTTCCTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEE
T ss_pred             HHhhCCCCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEE
Confidence            3455778999999999999999888876531                                         12589999


Q ss_pred             cCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          293 DRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       293 D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      |+++..++.+++|+++.|+.+ |.+.++|+..+...     .        ..+.||.|+++||-
T Consensus       263 Did~~av~~A~~N~~~agv~~~i~~~~~D~~~~~~~-----~--------~~~~~d~Iv~NPPY  313 (703)
T 3v97_A          263 DSDARVIQRARTNARLAGIGELITFEVKDVAQLTNP-----L--------PKGPYGTVLSNPPY  313 (703)
T ss_dssp             ESCHHHHHHHHHHHHHTTCGGGEEEEECCGGGCCCS-----C--------TTCCCCEEEECCCC
T ss_pred             ECCHHHHHHHHHHHHHcCCCCceEEEECChhhCccc-----c--------ccCCCCEEEeCCCc
Confidence            999999999999999999976 99999999874211     1        02368999999997

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=98.23  E-value=7.5e-06  Score=79.48  Aligned_cols=115  Identities=12%  Similarity=0.046  Sum_probs=79.6

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh-------CCcceEEEecchhhhhhccCCCC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-------GLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~-------g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      .++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.++++....       +..++.++++|....+.... .+
T Consensus        33 ~~~~~VLDlGcG~G~~~~~l~~~--~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~-~~  109 (313)
T 3bgv_A           33 KRDITVLDLGCGKGGDLLKWKKG--RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSAEFITADSSKELLIDK-FR  109 (313)
T ss_dssp             --CCEEEEETCTTTTTHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEEEEEECCTTTSCSTTT-CS
T ss_pred             CCCCEEEEECCCCcHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceEEEEEecccccchhhh-cc
Confidence            47889999999999999999884  3579999999999999999998876       44579999999876531100 00


Q ss_pred             CCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                              ...+.||.|++.    .  .           ..|.....      +....+|+++.. |+.+|.+++|.
T Consensus       110 --------~~~~~fD~V~~~----~--~-----------l~~~~~~~------~~~~~~l~~~~~~LkpgG~li~~~  155 (313)
T 3bgv_A          110 --------DPQMCFDICSCQ----F--V-----------CHYSFESY------EQADMMLRNACERLSPGGYFIGTT  155 (313)
T ss_dssp             --------STTCCEEEEEEE----T--C-----------GGGGGGSH------HHHHHHHHHHHTTEEEEEEEEEEE
T ss_pred             --------cCCCCEEEEEEe----c--c-----------hhhccCCH------HHHHHHHHHHHHHhCCCcEEEEec
Confidence                    013469999861    1  2           12331111      123467777755 89999999853

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=98.21  E-value=3.1e-06  Score=76.28  Aligned_cols=103  Identities=24%  Similarity=0.203  Sum_probs=77.1

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      ..++ +|||++||+|..+..+++.   ..+|+++|+++.+++.++++++..|. ++.+.++|....+.            
T Consensus        28 ~~~~-~vLdiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~------------   90 (202)
T 2kw5_A           28 IPQG-KILCLAEGEGRNACFLASL---GYEVTAVDQSSVGLAKAKQLAQEKGV-KITTVQSNLADFDI------------   90 (202)
T ss_dssp             SCSS-EEEECCCSCTHHHHHHHTT---TCEEEEECSSHHHHHHHHHHHHHHTC-CEEEECCBTTTBSC------------
T ss_pred             CCCC-CEEEECCCCCHhHHHHHhC---CCeEEEEECCHHHHHHHHHHHHhcCC-ceEEEEcChhhcCC------------
Confidence            4567 9999999999999999886   35999999999999999999998887 79999999876421            


Q ss_pred             CCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          339 NSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                         ..+.||.|++.     ...             +.         .....++|+.+.. ++.+|.++++.
T Consensus        91 ---~~~~fD~v~~~-----~~~-------------~~---------~~~~~~~l~~~~~~L~pgG~l~~~~  131 (202)
T 2kw5_A           91 ---VADAWEGIVSI-----FCH-------------LP---------SSLRQQLYPKVYQGLKPGGVFILEG  131 (202)
T ss_dssp             ---CTTTCSEEEEE-----CCC-------------CC---------HHHHHHHHHHHHTTCCSSEEEEEEE
T ss_pred             ---CcCCccEEEEE-----hhc-------------CC---------HHHHHHHHHHHHHhcCCCcEEEEEE
Confidence               13569999861     112             10         0123456666644 78899888853

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=98.21  E-value=1.5e-06  Score=79.54  Aligned_cols=72  Identities=22%  Similarity=0.196  Sum_probs=59.2

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHH----HHhCCcceEEEecchhhhh
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLA----AEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l----~r~g~~nv~~~~~Da~~~~  325 (422)
                      ....+.++++.+|||+|||+|..+..+++.. +.++|+++|+|+.+++.+.+++    ++.+++++.++++|+..++
T Consensus        19 ~~~~l~~~~~~~vLDiGcG~G~~~~~la~~~-p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~   94 (218)
T 3mq2_A           19 EFEQLRSQYDDVVLDVGTGDGKHPYKVARQN-PSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLP   94 (218)
T ss_dssp             HHHHHHTTSSEEEEEESCTTCHHHHHHHHHC-TTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCC
T ss_pred             HHHHhhccCCCEEEEecCCCCHHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCC
Confidence            4455668899999999999999999999974 4689999999999988755444    3467789999999998754

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.19  E-value=1.9e-07  Score=88.24  Aligned_cols=97  Identities=9%  Similarity=0.018  Sum_probs=78.1

Q ss_pred             EEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchh
Q 014571          243 IFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL  322 (422)
Q Consensus       243 ~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~  322 (422)
                      |..+..-...++..+++.+|++|||+|||+|..|..+++..   ++|+|+|+++.+++.++++++  +..+++++++|+.
T Consensus        11 fl~~~~~~~~i~~~~~~~~~~~VLDiG~G~G~~~~~l~~~~---~~v~~id~~~~~~~~a~~~~~--~~~~v~~~~~D~~   85 (245)
T 1yub_A           11 FLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKIS---KQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQDIL   85 (245)
T ss_dssp             BCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHHS---SEEEESSSSCSSSSSSSCTTT--TCSEEEECCSCCT
T ss_pred             CCCCHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHhC---CeEEEEECCHHHHHHHHHHhc--cCCceEEEECChh
Confidence            45566666777888899999999999999999999999872   799999999999999888776  4568999999988


Q ss_pred             hhhhccCCCCCCccccCCCCCCCCCceeecCCccccC
Q 014571          323 KAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKE  359 (422)
Q Consensus       323 ~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G  359 (422)
                      +.+..              ..+.| .|+.++|...+.
T Consensus        86 ~~~~~--------------~~~~f-~vv~n~Py~~~~  107 (245)
T 1yub_A           86 QFQFP--------------NKQRY-KIVGNIPYHLST  107 (245)
T ss_dssp             TTTCC--------------CSSEE-EEEEECCSSSCH
T ss_pred             hcCcc--------------cCCCc-EEEEeCCccccH
Confidence            65321              01357 799999987753

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=98.19  E-value=4.8e-06  Score=79.49  Aligned_cols=75  Identities=15%  Similarity=0.122  Sum_probs=63.4

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      ++.+|||++||+|..+..+++.   ..+|+++|+++.+++.++++++..|+ .++.++++|+...+..            
T Consensus        68 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~------------  132 (285)
T 4htf_A           68 QKLRVLDAGGGEGQTAIKMAER---GHQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVASH------------  132 (285)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGGG------------
T ss_pred             CCCEEEEeCCcchHHHHHHHHC---CCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhhh------------
Confidence            3789999999999999999987   46999999999999999999999998 6899999999876421            


Q ss_pred             CCCCCCCCceeec
Q 014571          340 SKDNNYITSQTSD  352 (422)
Q Consensus       340 ~~~~~~FD~VLvD  352 (422)
                        ..+.||.|++.
T Consensus       133 --~~~~fD~v~~~  143 (285)
T 4htf_A          133 --LETPVDLILFH  143 (285)
T ss_dssp             --CSSCEEEEEEE
T ss_pred             --cCCCceEEEEC
Confidence              13568999973

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=98.19  E-value=4e-06  Score=83.28  Aligned_cols=82  Identities=17%  Similarity=0.070  Sum_probs=67.1

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      ...+...++.+|||++||+|..+..+++.  +..+|+|+|.++ +++.++++++..|+ .+++++.+|+.....      
T Consensus        57 ~~~~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~gvD~s~-~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~------  127 (340)
T 2fyt_A           57 YQNPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSE-ILYQAMDIIRLNKLEDTITLIKGKIEEVHL------  127 (340)
T ss_dssp             HHCGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC------
T ss_pred             HhhhhhcCCCEEEEeeccCcHHHHHHHHc--CCCEEEEEChHH-HHHHHHHHHHHcCCCCcEEEEEeeHHHhcC------
Confidence            34455678999999999999999999886  346999999996 99999999999998 689999999876421      


Q ss_pred             CCccccCCCCCCCCCceeecC
Q 014571          333 DEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDa  353 (422)
                               ..+.||.|+++.
T Consensus       128 ---------~~~~~D~Ivs~~  139 (340)
T 2fyt_A          128 ---------PVEKVDVIISEW  139 (340)
T ss_dssp             ---------SCSCEEEEEECC
T ss_pred             ---------CCCcEEEEEEcC
Confidence                     125689999854

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=98.19  E-value=3.4e-06  Score=78.85  Aligned_cols=75  Identities=8%  Similarity=0.013  Sum_probs=62.3

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .+.++.+|||+|||+|..+..+++.   .++|+++|+|+.+++.+++++ ..+..++.++.+|+...+.           
T Consensus        36 ~~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~-~~~~~~~~~~~~d~~~~~~-----------  100 (263)
T 2yqz_A           36 PKGEEPVFLELGVGTGRIALPLIAR---GYRYIALDADAAMLEVFRQKI-AGVDRKVQVVQADARAIPL-----------  100 (263)
T ss_dssp             CSSSCCEEEEETCTTSTTHHHHHTT---TCEEEEEESCHHHHHHHHHHT-TTSCTTEEEEESCTTSCCS-----------
T ss_pred             CCCCCCEEEEeCCcCCHHHHHHHHC---CCEEEEEECCHHHHHHHHHHh-hccCCceEEEEcccccCCC-----------
Confidence            5678999999999999999999986   479999999999999999988 4455789999999865421           


Q ss_pred             cCCCCCCCCCceee
Q 014571          338 CNSKDNNYITSQTS  351 (422)
Q Consensus       338 ~~~~~~~~FD~VLv  351 (422)
                          ..+.||.|++
T Consensus       101 ----~~~~fD~v~~  110 (263)
T 2yqz_A          101 ----PDESVHGVIV  110 (263)
T ss_dssp             ----CTTCEEEEEE
T ss_pred             ----CCCCeeEEEE
Confidence                1346899887

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=98.18  E-value=1.3e-06  Score=81.76  Aligned_cols=65  Identities=15%  Similarity=0.020  Sum_probs=55.6

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCC-hHHHHHH---HHHHHHhCCcceEEEecchhhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRS-HNKVMDI---QKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s-~~rl~~l---~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      .+++++|||+|||+|..+..+|+.. +.+.|+|+|+| +.+++.+   ++++++.|+.|+.++++|+..+
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~-~~~~v~GvD~s~~~ml~~A~~A~~~~~~~~~~~v~~~~~d~~~l   90 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAIND-QNTFYIGIDPVKENLFDISKKIIKKPSKGGLSNVVFVIAAAESL   90 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTC-TTEEEEEECSCCGGGHHHHHHHTSCGGGTCCSSEEEECCBTTBC
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHHHHcCCCCeEEEEcCHHHh
Confidence            4689999999999999999998753 46899999999 6666655   8888888999999999998875

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=98.18  E-value=3.2e-06  Score=78.20  Aligned_cols=60  Identities=10%  Similarity=-0.048  Sum_probs=51.7

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchh
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDAL  322 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~  322 (422)
                      .+.++|||++||.|..+..++.... ..+++|+|+|+.+++.+++++++.|.. ++++  .|..
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p-~a~~~A~Di~~~~leiar~~~~~~g~~~~v~~--~d~~  108 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENE-KIIYHAYDIDRAEIAFLSSIIGKLKTTIKYRF--LNKE  108 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSC-CCEEEEECSCHHHHHHHHHHHHHSCCSSEEEE--ECCH
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCC-CCEEEEEeCCHHHHHHHHHHHHhcCCCccEEE--eccc
Confidence            4577999999999999999988754 459999999999999999999999997 6776  4543

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=98.18  E-value=3.1e-06  Score=79.07  Aligned_cols=84  Identities=11%  Similarity=0.044  Sum_probs=67.2

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      |.....-....+.+.++.+|||++||+|..+..+++.. +.++|+++|+++.+++.++++     ..++.++.+|+...+
T Consensus        18 ~~~~~~~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~~-~~~~v~~~D~s~~~~~~a~~~-----~~~~~~~~~d~~~~~   91 (259)
T 2p35_A           18 RTRPARDLLAQVPLERVLNGYDLGCGPGNSTELLTDRY-GVNVITGIDSDDDMLEKAADR-----LPNTNFGKADLATWK   91 (259)
T ss_dssp             GGHHHHHHHTTCCCSCCSSEEEETCTTTHHHHHHHHHH-CTTSEEEEESCHHHHHHHHHH-----STTSEEEECCTTTCC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCcCCHHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh-----CCCcEEEECChhhcC
Confidence            44455555666778899999999999999999999886 357999999999999999887     467899999987543


Q ss_pred             hccCCCCCCccccCCCCCCCCCceee
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                       .               .+.||.|++
T Consensus        92 -~---------------~~~fD~v~~  101 (259)
T 2p35_A           92 -P---------------AQKADLLYA  101 (259)
T ss_dssp             -C---------------SSCEEEEEE
T ss_pred             -c---------------cCCcCEEEE
Confidence             1               245888887

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=98.18  E-value=1.9e-06  Score=80.19  Aligned_cols=76  Identities=16%  Similarity=0.054  Sum_probs=62.7

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .++.+|||+|||+|..+..+++..  ...|+++|+++.+++.+++++...|..++.++.+|+...+.             
T Consensus        78 ~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~-------------  142 (241)
T 2ex4_A           78 TGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP-------------  142 (241)
T ss_dssp             CCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC-------------
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHhhhcCCceEEEEEcChhhcCC-------------
Confidence            368999999999999999888764  46999999999999999999888766679999999775431             


Q ss_pred             CCCCCCCCceeec
Q 014571          340 SKDNNYITSQTSD  352 (422)
Q Consensus       340 ~~~~~~FD~VLvD  352 (422)
                        ..+.||.|+++
T Consensus       143 --~~~~fD~v~~~  153 (241)
T 2ex4_A          143 --EPDSYDVIWIQ  153 (241)
T ss_dssp             --CSSCEEEEEEE
T ss_pred             --CCCCEEEEEEc
Confidence              13469999974

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=98.17  E-value=4.9e-06  Score=82.77  Aligned_cols=83  Identities=16%  Similarity=0.080  Sum_probs=67.5

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~  331 (422)
                      +...+...++.+|||+|||+|..+..+++.  +.++|+|+|.++ +++.++++++..|+ .+++++.+|.....      
T Consensus        42 i~~~l~~~~~~~VLDiGcGtG~ls~~la~~--g~~~V~~vD~s~-~~~~a~~~~~~~~l~~~v~~~~~d~~~~~------  112 (348)
T 2y1w_A           42 ILQNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS------  112 (348)
T ss_dssp             HHHTGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-HHHHHHHHHHHTTCTTTEEEEESCTTTCC------
T ss_pred             HHhccccCCcCEEEEcCCCccHHHHHHHhC--CCCEEEEECCHH-HHHHHHHHHHHcCCCCcEEEEEcchhhCC------
Confidence            344556678999999999999999999886  346999999996 88999999999998 67999999987542      


Q ss_pred             CCCccccCCCCCCCCCceeecCC
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                                ..+.||.|+++.+
T Consensus       113 ----------~~~~~D~Ivs~~~  125 (348)
T 2y1w_A          113 ----------LPEQVDIIISEPM  125 (348)
T ss_dssp             ----------CSSCEEEEEECCC
T ss_pred             ----------CCCceeEEEEeCc
Confidence                      1246899998654

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=98.16  E-value=3.4e-06  Score=81.29  Aligned_cols=56  Identities=13%  Similarity=-0.010  Sum_probs=48.9

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM  309 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~  309 (422)
                      ..+...+.+++|.+|||++||+|..|..+++.   .++|+|+|+|+.+++.++++++..
T Consensus        35 ~~il~~l~l~~g~~VLDlGcGtG~~a~~La~~---g~~V~gvD~S~~ml~~Ar~~~~~~   90 (261)
T 3iv6_A           35 ENDIFLENIVPGSTVAVIGASTRFLIEKALER---GASVTVFDFSQRMCDDLAEALADR   90 (261)
T ss_dssp             HHHHHTTTCCTTCEEEEECTTCHHHHHHHHHT---TCEEEEEESCHHHHHHHHHHTSSS
T ss_pred             HHHHHhcCCCCcCEEEEEeCcchHHHHHHHhc---CCEEEEEECCHHHHHHHHHHHHhc
Confidence            44566778899999999999999999999986   368999999999999999987654

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=98.16  E-value=5.5e-06  Score=75.01  Aligned_cols=109  Identities=13%  Similarity=0.077  Sum_probs=78.7

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      +...+....++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.+++    .|..++.++++|+....      
T Consensus        37 ~~~~l~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~s~~~~~~a~~----~~~~~~~~~~~d~~~~~------  103 (218)
T 3ou2_A           37 ALERLRAGNIRGDVLELASGTGYWTRHLSGL---ADRVTALDGSAEMIAEAGR----HGLDNVEFRQQDLFDWT------  103 (218)
T ss_dssp             HHHHHTTTTSCSEEEEESCTTSHHHHHHHHH---SSEEEEEESCHHHHHHHGG----GCCTTEEEEECCTTSCC------
T ss_pred             HHHHHhcCCCCCeEEEECCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHh----cCCCCeEEEecccccCC------
Confidence            3444444778899999999999999999988   4699999999999999887    67788999999986541      


Q ss_pred             CCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                                ..+.||.|++.      ..+.           +.+.        +....+|+++.. |+.+|.++++.
T Consensus       104 ----------~~~~~D~v~~~------~~l~-----------~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~  146 (218)
T 3ou2_A          104 ----------PDRQWDAVFFA------HWLA-----------HVPD--------DRFEAFWESVRSAVAPGGVVEFVD  146 (218)
T ss_dssp             ----------CSSCEEEEEEE------SCGG-----------GSCH--------HHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ----------CCCceeEEEEe------chhh-----------cCCH--------HHHHHHHHHHHHHcCCCeEEEEEe
Confidence                      13568999973      1211           1110        123456666644 78888888853

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=98.16  E-value=3e-06  Score=81.67  Aligned_cols=111  Identities=19%  Similarity=0.131  Sum_probs=80.2

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC---cceEEEecchhhhhhccCC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL---KCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~---~nv~~~~~Da~~~~~~~~~  330 (422)
                      ...+.++++ +|||++||+|..+..+++.   ..+|+++|+++.+++.+++++...+.   .++.++++|+..++.    
T Consensus        76 ~~~~~~~~~-~vLDlGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~v~~~~~d~~~~~~----  147 (299)
T 3g2m_A           76 ATRTGPVSG-PVLELAAGMGRLTFPFLDL---GWEVTALELSTSVLAAFRKRLAEAPADVRDRCTLVQGDMSAFAL----  147 (299)
T ss_dssp             HHHHCCCCS-CEEEETCTTTTTHHHHHTT---TCCEEEEESCHHHHHHHHHHHHTSCHHHHTTEEEEECBTTBCCC----
T ss_pred             HHhhCCCCC-cEEEEeccCCHHHHHHHHc---CCeEEEEECCHHHHHHHHHHHhhcccccccceEEEeCchhcCCc----
Confidence            344445455 9999999999999999987   36899999999999999999998875   679999999876421    


Q ss_pred             CCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                                  .+.||.|++.     ...   +        .|..        ...+.++|+++.. |+.+|.++++.
T Consensus       148 ------------~~~fD~v~~~-----~~~---~--------~~~~--------~~~~~~~l~~~~~~L~pgG~l~~~~  190 (299)
T 3g2m_A          148 ------------DKRFGTVVIS-----SGS---I--------NELD--------EADRRGLYASVREHLEPGGKFLLSL  190 (299)
T ss_dssp             ------------SCCEEEEEEC-----HHH---H--------TTSC--------HHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ------------CCCcCEEEEC-----Ccc---c--------ccCC--------HHHHHHHHHHHHHHcCCCcEEEEEe
Confidence                        3568988861     122   1        0111        0123456666654 78999988843

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=98.15  E-value=4.8e-06  Score=82.91  Aligned_cols=82  Identities=11%  Similarity=0.105  Sum_probs=66.7

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--CC--cceEEEecchhhhhhccCCCCCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--GL--KCITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g~--~nv~~~~~Da~~~~~~~~~~~~~  334 (422)
                      ...+.+|||+|||.|+.+..+++.. +..+|+++|+++.+++.+++++.++  |+  .+++++.+|+..+....      
T Consensus       118 ~~~~~~VLdIG~G~G~~a~~la~~~-~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~------  190 (334)
T 1xj5_A          118 IPNPKKVLVIGGGDGGVLREVARHA-SIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA------  190 (334)
T ss_dssp             SSCCCEEEEETCSSSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS------
T ss_pred             CCCCCEEEEECCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc------
Confidence            4466899999999999999999863 4579999999999999999998875  44  57999999998764311      


Q ss_pred             ccccCCCCCCCCCceeecCC
Q 014571          335 PNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDaP  354 (422)
                             ..+.||.|++|++
T Consensus       191 -------~~~~fDlIi~d~~  203 (334)
T 1xj5_A          191 -------AEGSYDAVIVDSS  203 (334)
T ss_dssp             -------CTTCEEEEEECCC
T ss_pred             -------cCCCccEEEECCC
Confidence                   0246999999975

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=98.15  E-value=4.2e-06  Score=79.65  Aligned_cols=78  Identities=18%  Similarity=0.165  Sum_probs=64.6

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      +.++.+|||+|||+|..+..+++.  +.++|+++|+++.+++.+++++...|. .++.++++|+...+..          
T Consensus        62 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----------  129 (298)
T 1ri5_A           62 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHMD----------  129 (298)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCCC----------
T ss_pred             CCCCCeEEEECCCCCHHHHHHHHC--CCCEEEEEECCHHHHHHHHHHHHhcCCCccEEEEECCccccccC----------
Confidence            468899999999999999998876  346999999999999999999998887 5799999998764210          


Q ss_pred             cCCCCCCCCCceeec
Q 014571          338 CNSKDNNYITSQTSD  352 (422)
Q Consensus       338 ~~~~~~~~FD~VLvD  352 (422)
                          ..+.||.|++.
T Consensus       130 ----~~~~fD~v~~~  140 (298)
T 1ri5_A          130 ----LGKEFDVISSQ  140 (298)
T ss_dssp             ----CSSCEEEEEEE
T ss_pred             ----CCCCcCEEEEC
Confidence                13568999875

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=98.14  E-value=5.9e-06  Score=76.08  Aligned_cols=71  Identities=18%  Similarity=0.075  Sum_probs=61.2

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      ++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.+++++...+. ++.++++|....+.              
T Consensus        37 ~~~~vLdiG~G~G~~~~~l~~~---~~~~~~~D~s~~~~~~a~~~~~~~~~-~~~~~~~d~~~~~~--------------   98 (246)
T 1y8c_A           37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI--------------   98 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC--------------
T ss_pred             CCCeEEEeCCCCCHHHHHHHHC---CCcEEEEECCHHHHHHHHHHHhhcCC-CeEEEecccccCCc--------------
Confidence            7889999999999999999987   35899999999999999999998886 78999999876421              


Q ss_pred             CCCCCCCceee
Q 014571          341 KDNNYITSQTS  351 (422)
Q Consensus       341 ~~~~~FD~VLv  351 (422)
                        .+.||.|++
T Consensus        99 --~~~fD~v~~  107 (246)
T 1y8c_A           99 --NRKFDLITC  107 (246)
T ss_dssp             --SCCEEEEEE
T ss_pred             --cCCceEEEE
Confidence              245899986

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=98.14  E-value=5.5e-06  Score=80.48  Aligned_cols=73  Identities=18%  Similarity=0.194  Sum_probs=61.8

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR  326 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~  326 (422)
                      ...++..+++++|++|||+|||+|..|..+++.... .++|+|+|+++.+++.++++.    ..+++++++|+.+++.
T Consensus        31 ~~~iv~~~~~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~----~~~v~~i~~D~~~~~~  104 (279)
T 3uzu_A           31 IDAIVAAIRPERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF----GELLELHAGDALTFDF  104 (279)
T ss_dssp             HHHHHHHHCCCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH----GGGEEEEESCGGGCCG
T ss_pred             HHHHHHhcCCCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc----CCCcEEEECChhcCCh
Confidence            344566778999999999999999999999987543 366999999999999999983    4689999999998754

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=98.13  E-value=4.9e-06  Score=91.48  Aligned_cols=73  Identities=14%  Similarity=0.168  Sum_probs=61.6

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh------CCcceEEEecchhhhh
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM------GLKCITTYKLDALKAV  325 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~------g~~nv~~~~~Da~~~~  325 (422)
                      +...+...++.+|||+|||+|..+..+++..++..+|+|+|+++.+++.++++++..      |+.+++++++|+..++
T Consensus       713 LLelL~~~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVefiqGDa~dLp  791 (950)
T 3htx_A          713 ALKHIRESSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSATLYDGSILEFD  791 (950)
T ss_dssp             HHHHHHHSCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEEEEESCTTSCC
T ss_pred             HHHHhcccCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceEEEECchHhCC
Confidence            445556678999999999999999999988544579999999999999999987753      6778999999998754

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=98.13  E-value=4.4e-06  Score=80.88  Aligned_cols=97  Identities=15%  Similarity=0.046  Sum_probs=75.4

Q ss_pred             ceEEEeCh-hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571          241 GEIFLQNL-PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL  319 (422)
Q Consensus       241 G~~~~Qd~-~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~  319 (422)
                      |.-++.|. -....+..+++.+| +|||+|||+|..|..+++..   ++|+|+|+++.+++.+++++.   -.+++++++
T Consensus        26 GQnfL~d~~i~~~Iv~~~~~~~~-~VLEIG~G~G~lt~~L~~~~---~~V~avEid~~~~~~l~~~~~---~~~v~vi~~   98 (271)
T 3fut_A           26 GQNFLVSEAHLRRIVEAARPFTG-PVFEVGPGLGALTRALLEAG---AEVTAIEKDLRLRPVLEETLS---GLPVRLVFQ   98 (271)
T ss_dssp             SCCEECCHHHHHHHHHHHCCCCS-CEEEECCTTSHHHHHHHHTT---CCEEEEESCGGGHHHHHHHTT---TSSEEEEES
T ss_pred             CccccCCHHHHHHHHHhcCCCCC-eEEEEeCchHHHHHHHHHcC---CEEEEEECCHHHHHHHHHhcC---CCCEEEEEC
Confidence            44444443 34456677789999 99999999999999999973   689999999999999999875   258999999


Q ss_pred             chhhhhhccCCCCCCccccCCCCCCCCCceeecCCcccc
Q 014571          320 DALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       320 Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                      |+.++....              ...||.|+...|-.-+
T Consensus        99 D~l~~~~~~--------------~~~~~~iv~NlPy~is  123 (271)
T 3fut_A           99 DALLYPWEE--------------VPQGSLLVANLPYHIA  123 (271)
T ss_dssp             CGGGSCGGG--------------SCTTEEEEEEECSSCC
T ss_pred             ChhhCChhh--------------ccCccEEEecCccccc
Confidence            998764321              1137889988887654

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=98.12  E-value=6.2e-06  Score=83.04  Aligned_cols=79  Identities=14%  Similarity=0.082  Sum_probs=66.6

Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCC
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~  334 (422)
                      .+...+|.+|||++||+|..+..+++.  +..+|+|+|.+ .+++.++++++..|+.+ |+++++|+..+..        
T Consensus        58 ~~~~~~~~~VLDlGcGtG~ls~~la~~--g~~~V~gvD~s-~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--------  126 (376)
T 3r0q_C           58 NKHHFEGKTVLDVGTGSGILAIWSAQA--GARKVYAVEAT-KMADHARALVKANNLDHIVEVIEGSVEDISL--------  126 (376)
T ss_dssp             TTTTTTTCEEEEESCTTTHHHHHHHHT--TCSEEEEEESS-TTHHHHHHHHHHTTCTTTEEEEESCGGGCCC--------
T ss_pred             ccccCCCCEEEEeccCcCHHHHHHHhc--CCCEEEEEccH-HHHHHHHHHHHHcCCCCeEEEEECchhhcCc--------
Confidence            345678999999999999999999987  33599999999 99999999999999865 9999999876531        


Q ss_pred             ccccCCCCCCCCCceeecC
Q 014571          335 PNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDa  353 (422)
                              .+.||.|+++.
T Consensus       127 --------~~~~D~Iv~~~  137 (376)
T 3r0q_C          127 --------PEKVDVIISEW  137 (376)
T ss_dssp             --------SSCEEEEEECC
T ss_pred             --------CCcceEEEEcC
Confidence                    25689999865

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.12  E-value=5.2e-06  Score=85.54  Aligned_cols=68  Identities=12%  Similarity=0.058  Sum_probs=58.9

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHH-------HHHHHHhC--CcceEEEecchh
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDI-------QKLAAEMG--LKCITTYKLDAL  322 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l-------~~~l~r~g--~~nv~~~~~Da~  322 (422)
                      ...+++++|++|||+|||+|.-+..+|...+ ..+|+|+|+++..++.+       +++++..|  +.+++++++|..
T Consensus       235 l~~l~l~~g~~VLDLGCGsG~la~~LA~~~g-~~~V~GVDis~~~l~~A~~Ml~~ar~~~~~~Gl~~~nV~~i~gD~~  311 (433)
T 1u2z_A          235 YQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELKKRCKLYGMRLNNVEFSLKKSF  311 (433)
T ss_dssp             HHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHHHHHHHTTBCCCCEEEEESSCS
T ss_pred             HHhcCCCCCCEEEEeCCCcCHHHHHHHHHCC-CCEEEEEeCCHHHHHHHHHhHHHHHHHHHHcCCCCCceEEEEcCcc
Confidence            3556788999999999999999999999764 46899999999988888       99999999  578999988654

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=98.11  E-value=2.7e-06  Score=82.35  Aligned_cols=49  Identities=18%  Similarity=0.225  Sum_probs=41.8

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG  310 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g  310 (422)
                      ++.+|||++||+|..+..+++..+ ..+|+++|+++.+++.++++++..+
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~-~~~v~gvDis~~~i~~A~~~~~~~~   94 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWG-PSRMVGLDIDSRLIHSARQNIRHYL   94 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTC-CSEEEEEESCHHHHHHHHHTC----
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcC-CCEEEEECCCHHHHHHHHHHHHhhh
Confidence            789999999999999999999875 3699999999999999999987765

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.11  E-value=5.5e-06  Score=79.91  Aligned_cols=80  Identities=16%  Similarity=0.147  Sum_probs=65.6

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--CC--cceEEEecchhhhhhccCCCCCCcc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--GL--KCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g~--~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      .+.+|||+|||.|+-+..+++.. +..+|+++|+++..++.+++++..+  ++  ++++++.+|+.......        
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~--------  145 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKHP-SVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS--------  145 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTCT-TCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC--------
T ss_pred             CCCEEEEECCchHHHHHHHHhCC-CCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhC--------
Confidence            46799999999999999998763 4579999999999999999998763  33  57999999998764311        


Q ss_pred             ccCCCCCCCCCceeecCCc
Q 014571          337 MCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPC  355 (422)
                            .+.||.|++|+|.
T Consensus       146 ------~~~fD~Ii~d~~~  158 (275)
T 1iy9_A          146 ------ENQYDVIMVDSTE  158 (275)
T ss_dssp             ------CSCEEEEEESCSS
T ss_pred             ------CCCeeEEEECCCC
Confidence                  3569999999875

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=98.11  E-value=6e-06  Score=80.98  Aligned_cols=82  Identities=15%  Similarity=0.191  Sum_probs=66.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--CC--cceEEEecchhhhhhccCCCCCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--GL--KCITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g~--~nv~~~~~Da~~~~~~~~~~~~~  334 (422)
                      ...+.+|||+|||.|+.+..+++.. +..+|+++|+++..++.+++++...  ++  ++++++.+|+......       
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~-------  164 (304)
T 2o07_A           93 HPNPRKVLIIGGGDGGVLREVVKHP-SVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ-------  164 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT-------
T ss_pred             CCCCCEEEEECCCchHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh-------
Confidence            3456899999999999999998863 4579999999999999999998763  33  5799999999875431       


Q ss_pred             ccccCCCCCCCCCceeecCCc
Q 014571          335 PNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDaPC  355 (422)
                             ..+.||.|++|+|.
T Consensus       165 -------~~~~fD~Ii~d~~~  178 (304)
T 2o07_A          165 -------NQDAFDVIITDSSD  178 (304)
T ss_dssp             -------CSSCEEEEEEECC-
T ss_pred             -------CCCCceEEEECCCC
Confidence                   13569999999874

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=98.10  E-value=6.3e-06  Score=82.07  Aligned_cols=78  Identities=17%  Similarity=0.066  Sum_probs=65.5

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      +.+|.+|||++||+|..+..+++.  +..+|+|+|++ .+++.++++++..|+.+ |+++++|+.....           
T Consensus        64 ~~~~~~VLDvGcG~G~~~~~la~~--g~~~v~gvD~s-~~l~~a~~~~~~~~~~~~v~~~~~d~~~~~~-----------  129 (349)
T 3q7e_A           64 LFKDKVVLDVGSGTGILCMFAAKA--GARKVIGIECS-SISDYAVKIVKANKLDHVVTIIKGKVEEVEL-----------  129 (349)
T ss_dssp             HHTTCEEEEESCTTSHHHHHHHHT--TCSEEEEEECS-THHHHHHHHHHHTTCTTTEEEEESCTTTCCC-----------
T ss_pred             cCCCCEEEEEeccchHHHHHHHHC--CCCEEEEECcH-HHHHHHHHHHHHcCCCCcEEEEECcHHHccC-----------
Confidence            457899999999999999999987  45699999999 59999999999999866 9999999876521           


Q ss_pred             cCCCCCCCCCceeecCC
Q 014571          338 CNSKDNNYITSQTSDSM  354 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaP  354 (422)
                          ..+.||.|+++.+
T Consensus       130 ----~~~~fD~Iis~~~  142 (349)
T 3q7e_A          130 ----PVEKVDIIISEWM  142 (349)
T ss_dssp             ----SSSCEEEEEECCC
T ss_pred             ----CCCceEEEEEccc
Confidence                1356999998653

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=98.09  E-value=3.4e-06  Score=80.33  Aligned_cols=65  Identities=26%  Similarity=0.272  Sum_probs=55.0

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      .+...+.+.++.+|||++||+|..+..+++   ..++|+++|+|+.+++.+++++     .++.+..+|+..+
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~d~~~~  112 (279)
T 3ccf_A           48 DLLQLLNPQPGEFILDLGCGTGQLTEKIAQ---SGAEVLGTDNAATMIEKARQNY-----PHLHFDVADARNF  112 (279)
T ss_dssp             HHHHHHCCCTTCEEEEETCTTSHHHHHHHH---TTCEEEEEESCHHHHHHHHHHC-----TTSCEEECCTTTC
T ss_pred             HHHHHhCCCCCCEEEEecCCCCHHHHHHHh---CCCeEEEEECCHHHHHHHHhhC-----CCCEEEECChhhC
Confidence            344667788999999999999999999998   3579999999999999988764     5788888888754

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.09  E-value=6.1e-06  Score=79.86  Aligned_cols=82  Identities=12%  Similarity=0.101  Sum_probs=66.4

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC----CcceEEEecchhhhhhccCCCCCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG----LKCITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g----~~nv~~~~~Da~~~~~~~~~~~~~  334 (422)
                      ..++.+|||+|||.|+.+..+++.. +..+|+++|+++..++.+++++..++    -++++++.+|+.......      
T Consensus        76 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  148 (283)
T 2i7c_A           76 SKEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------  148 (283)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------
T ss_pred             CCCCCeEEEEeCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------
Confidence            3456899999999999999998763 45799999999999999999887653    367999999998764321      


Q ss_pred             ccccCCCCCCCCCceeecCCc
Q 014571          335 PNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDaPC  355 (422)
                              .+.||.|++|++.
T Consensus       149 --------~~~fD~Ii~d~~~  161 (283)
T 2i7c_A          149 --------TNTYDVIIVDSSD  161 (283)
T ss_dssp             --------CSCEEEEEEECCC
T ss_pred             --------CCCceEEEEcCCC
Confidence                    3569999999754

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.09  E-value=6.3e-06  Score=85.94  Aligned_cols=81  Identities=16%  Similarity=0.089  Sum_probs=66.3

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCC
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      ..+...++.+|||+|||+|..+..+++.  +..+|+|+|+++ +++.+++++++.|+ .+|+++.+|.....        
T Consensus       152 ~~l~~~~~~~VLDiGcGtG~la~~la~~--~~~~V~gvD~s~-~l~~A~~~~~~~gl~~~v~~~~~d~~~~~--------  220 (480)
T 3b3j_A          152 QNHTDFKDKIVLDVGCGSGILSFFAAQA--GARKIYAVEAST-MAQHAEVLVKSNNLTDRIVVIPGKVEEVS--------  220 (480)
T ss_dssp             HTGGGTTTCEEEEESCSTTHHHHHHHHT--TCSEEEEEECHH-HHHHHHHHHHHTTCTTTEEEEESCTTTCC--------
T ss_pred             HhhhhcCCCEEEEecCcccHHHHHHHHc--CCCEEEEEEcHH-HHHHHHHHHHHcCCCCcEEEEECchhhCc--------
Confidence            3445567899999999999999988874  456999999998 99999999999998 67999999987531        


Q ss_pred             CccccCCCCCCCCCceeecCC
Q 014571          334 EPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaP  354 (422)
                              ..+.||.|+++++
T Consensus       221 --------~~~~fD~Ivs~~~  233 (480)
T 3b3j_A          221 --------LPEQVDIIISEPM  233 (480)
T ss_dssp             --------CSSCEEEEECCCC
T ss_pred             --------cCCCeEEEEEeCc
Confidence                    1246899998654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=98.08  E-value=7.5e-06  Score=75.72  Aligned_cols=73  Identities=11%  Similarity=0.017  Sum_probs=58.8

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +.++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.++++     ..+++++++|.....      +.     
T Consensus        46 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~------~~-----  106 (226)
T 3m33_A           46 LTPQTRVLEAGCGHGPDAARFGPQ---AARWAAYDFSPELLKLARAN-----APHADVYEWNGKGEL------PA-----  106 (226)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHGGG---SSEEEEEESCHHHHHHHHHH-----CTTSEEEECCSCSSC------CT-----
T ss_pred             CCCCCeEEEeCCCCCHHHHHHHHc---CCEEEEEECCHHHHHHHHHh-----CCCceEEEcchhhcc------CC-----
Confidence            468899999999999999999987   46999999999999999987     467999999985321      00     


Q ss_pred             CCCCCCCCCceeec
Q 014571          339 NSKDNNYITSQTSD  352 (422)
Q Consensus       339 ~~~~~~~FD~VLvD  352 (422)
                        ...+.||.|++.
T Consensus       107 --~~~~~fD~v~~~  118 (226)
T 3m33_A          107 --GLGAPFGLIVSR  118 (226)
T ss_dssp             --TCCCCEEEEEEE
T ss_pred             --cCCCCEEEEEeC
Confidence              013569999885

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=98.08  E-value=7.4e-06  Score=76.51  Aligned_cols=79  Identities=11%  Similarity=0.052  Sum_probs=63.2

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      ....+...++.+|||++||+|..+..+++..  ..+|+++|+++.+++.+++++.   ..++.++++|+...+.      
T Consensus        36 l~~~~~~~~~~~vLD~GcG~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~d~~~~~~------  104 (253)
T 3g5l_A           36 LKKMLPDFNQKTVLDLGCGFGWHCIYAAEHG--AKKVLGIDLSERMLTEAKRKTT---SPVVCYEQKAIEDIAI------  104 (253)
T ss_dssp             HHTTCCCCTTCEEEEETCTTCHHHHHHHHTT--CSEEEEEESCHHHHHHHHHHCC---CTTEEEEECCGGGCCC------
T ss_pred             HHHhhhccCCCEEEEECCCCCHHHHHHHHcC--CCEEEEEECCHHHHHHHHHhhc---cCCeEEEEcchhhCCC------
Confidence            3445566689999999999999999999872  2399999999999999998765   4679999999876431      


Q ss_pred             CCccccCCCCCCCCCceee
Q 014571          333 DEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLv  351 (422)
                               ..+.||.|++
T Consensus       105 ---------~~~~fD~v~~  114 (253)
T 3g5l_A          105 ---------EPDAYNVVLS  114 (253)
T ss_dssp             ---------CTTCEEEEEE
T ss_pred             ---------CCCCeEEEEE
Confidence                     1356899987

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=98.08  E-value=6.6e-06  Score=78.43  Aligned_cols=78  Identities=15%  Similarity=0.039  Sum_probs=60.5

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH-----------------hCCcceEEEec
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE-----------------MGLKCITTYKL  319 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r-----------------~g~~nv~~~~~  319 (422)
                      +.+.++.+|||++||+|.-+..||+.   ...|+|+|+|+.+++.++++...                 ....+|.++++
T Consensus        64 ~~~~~~~~vLD~GCG~G~~~~~La~~---G~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  140 (252)
T 2gb4_A           64 LKGQSGLRVFFPLCGKAIEMKWFADR---GHTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCC  140 (252)
T ss_dssp             HTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEES
T ss_pred             ccCCCCCeEEEeCCCCcHHHHHHHHC---CCeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEEC
Confidence            34568899999999999999999986   35899999999999998775431                 01257999999


Q ss_pred             chhhhhhccCCCCCCccccCCCCCCCCCceee
Q 014571          320 DALKAVRRKNESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       320 Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                      |+..++...              .+.||.|+.
T Consensus       141 D~~~l~~~~--------------~~~FD~V~~  158 (252)
T 2gb4_A          141 SIFDLPRAN--------------IGKFDRIWD  158 (252)
T ss_dssp             CTTTGGGGC--------------CCCEEEEEE
T ss_pred             ccccCCccc--------------CCCEEEEEE
Confidence            998764311              246998884

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=98.07  E-value=6.4e-06  Score=76.65  Aligned_cols=79  Identities=15%  Similarity=0.026  Sum_probs=63.8

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      ...+...++.+|||++||+|..+..+++..  ..+|+++|+++.+++.+++++...  .++.++++|....+.       
T Consensus        86 l~~l~~~~~~~vLDiG~G~G~~~~~l~~~~--~~~v~~vD~s~~~~~~a~~~~~~~--~~~~~~~~d~~~~~~-------  154 (254)
T 1xtp_A           86 IASLPGHGTSRALDCGAGIGRITKNLLTKL--YATTDLLEPVKHMLEEAKRELAGM--PVGKFILASMETATL-------  154 (254)
T ss_dssp             HHTSTTCCCSEEEEETCTTTHHHHHTHHHH--CSEEEEEESCHHHHHHHHHHTTTS--SEEEEEESCGGGCCC-------
T ss_pred             HHhhcccCCCEEEEECCCcCHHHHHHHHhh--cCEEEEEeCCHHHHHHHHHHhccC--CceEEEEccHHHCCC-------
Confidence            344566789999999999999999998874  458999999999999999987654  679999999876421       


Q ss_pred             CccccCCCCCCCCCceee
Q 014571          334 EPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLv  351 (422)
                              ..+.||.|++
T Consensus       155 --------~~~~fD~v~~  164 (254)
T 1xtp_A          155 --------PPNTYDLIVI  164 (254)
T ss_dssp             --------CSSCEEEEEE
T ss_pred             --------CCCCeEEEEE
Confidence                    1356899986

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=98.06  E-value=6.2e-06  Score=78.67  Aligned_cols=90  Identities=11%  Similarity=0.078  Sum_probs=70.6

Q ss_pred             hHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhcc
Q 014571          249 PSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRK  328 (422)
Q Consensus       249 ~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~  328 (422)
                      -....+..+++.++++|||+|||+|..|..+++.  +.++|+|+|+++.+++.++++    +..+++++++|+.+.+...
T Consensus        19 i~~~iv~~~~~~~~~~VLDiG~G~G~lt~~L~~~--~~~~v~avEid~~~~~~~~~~----~~~~v~~i~~D~~~~~~~~   92 (249)
T 3ftd_A           19 VLKKIAEELNIEEGNTVVEVGGGTGNLTKVLLQH--PLKKLYVIELDREMVENLKSI----GDERLEVINEDASKFPFCS   92 (249)
T ss_dssp             HHHHHHHHTTCCTTCEEEEEESCHHHHHHHHTTS--CCSEEEEECCCHHHHHHHTTS----CCTTEEEECSCTTTCCGGG
T ss_pred             HHHHHHHhcCCCCcCEEEEEcCchHHHHHHHHHc--CCCeEEEEECCHHHHHHHHhc----cCCCeEEEEcchhhCChhH
Confidence            3344567778899999999999999999999986  247999999999999999987    3468999999998765322


Q ss_pred             CCCCCCccccCCCCCCCCCceeecCCcccc
Q 014571          329 NESNDEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                      .             ... ..|+.+.|-.-+
T Consensus        93 ~-------------~~~-~~vv~NlPy~i~  108 (249)
T 3ftd_A           93 L-------------GKE-LKVVGNLPYNVA  108 (249)
T ss_dssp             S-------------CSS-EEEEEECCTTTH
T ss_pred             c-------------cCC-cEEEEECchhcc
Confidence            1             112 378888888543

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.05  E-value=5.3e-06  Score=81.99  Aligned_cols=80  Identities=14%  Similarity=0.126  Sum_probs=65.1

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--C--CcceEEEecchhhhhhccCCCCCCc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--G--LKCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g--~~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      .++.+|||+|||+|+.+..+++.. +..+|+++|+++..++.+++++..+  +  -++++++.+|+.......       
T Consensus       115 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~-------  186 (321)
T 2pt6_A          115 KEPKNVLVVGGGDGGIIRELCKYK-SVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV-------  186 (321)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTCT-TCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC-------
T ss_pred             CCCCEEEEEcCCccHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc-------
Confidence            456899999999999999998763 3579999999999999999998763  2  357999999998754311       


Q ss_pred             cccCCCCCCCCCceeecCC
Q 014571          336 NMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaP  354 (422)
                             .+.||.|++|++
T Consensus       187 -------~~~fDvIi~d~~  198 (321)
T 2pt6_A          187 -------TNTYDVIIVDSS  198 (321)
T ss_dssp             -------CSCEEEEEEECC
T ss_pred             -------CCCceEEEECCc
Confidence                   246999999975

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=98.05  E-value=1.2e-05  Score=78.58  Aligned_cols=83  Identities=18%  Similarity=0.104  Sum_probs=65.8

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh----CCcceEEEecchhhhhhccCCCCCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM----GLKCITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~----g~~nv~~~~~Da~~~~~~~~~~~~~  334 (422)
                      ..++.+|||+|||.|+.+..+++.. +..+|+++|+++..++.+++++..+    .-.+++++.+|+.......      
T Consensus        93 ~~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~------  165 (304)
T 3bwc_A           93 HPKPERVLIIGGGDGGVLREVLRHG-TVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT------  165 (304)
T ss_dssp             SSSCCEEEEEECTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS------
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHhCC-CCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc------
Confidence            3567899999999999999999763 4579999999999999999987542    2357999999998865321      


Q ss_pred             ccccCCCCCCCCCceeecCCc
Q 014571          335 PNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDaPC  355 (422)
                             ..+.||.|++|.+.
T Consensus       166 -------~~~~fDvIi~d~~~  179 (304)
T 3bwc_A          166 -------PDNTYDVVIIDTTD  179 (304)
T ss_dssp             -------CTTCEEEEEEECC-
T ss_pred             -------cCCceeEEEECCCC
Confidence                   13569999998764

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=98.04  E-value=9e-06  Score=79.90  Aligned_cols=81  Identities=16%  Similarity=0.068  Sum_probs=65.8

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--C---CcceEEEecchhhhhhccCCCCCC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--G---LKCITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g---~~nv~~~~~Da~~~~~~~~~~~~~  334 (422)
                      ..+.+|||+|||.|+-+..+++.. +..+|+++|+++..++.+++++..+  |   -++++++.+|+.......      
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------  148 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHP-TVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------  148 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTST-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcC-CCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc------
Confidence            355799999999999999998863 3579999999999999999998762  2   467999999998764321      


Q ss_pred             ccccCCCCCCCCCceeecCCc
Q 014571          335 PNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDaPC  355 (422)
                              .+.||.|++|++.
T Consensus       149 --------~~~fD~Ii~d~~~  161 (314)
T 1uir_A          149 --------EERYDVVIIDLTD  161 (314)
T ss_dssp             --------CCCEEEEEEECCC
T ss_pred             --------CCCccEEEECCCC
Confidence                    3469999999764

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=98.04  E-value=4.2e-06  Score=79.17  Aligned_cols=78  Identities=21%  Similarity=0.098  Sum_probs=61.8

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      ..+...+.+.++.+|||+|||+|..+..+++   +.++|+++|+|+.+++.++++.      ++.++++|+...+.    
T Consensus        24 ~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~gvD~s~~~~~~a~~~~------~~~~~~~d~~~~~~----   90 (261)
T 3ege_A           24 NAIINLLNLPKGSVIADIGAGTGGYSVALAN---QGLFVYAVEPSIVMRQQAVVHP------QVEWFTGYAENLAL----   90 (261)
T ss_dssp             HHHHHHHCCCTTCEEEEETCTTSHHHHHHHT---TTCEEEEECSCHHHHHSSCCCT------TEEEECCCTTSCCS----
T ss_pred             HHHHHHhCCCCCCEEEEEcCcccHHHHHHHh---CCCEEEEEeCCHHHHHHHHhcc------CCEEEECchhhCCC----
Confidence            3455666778999999999999999999997   3579999999999888776653      79999999875431    


Q ss_pred             CCCCccccCCCCCCCCCceeec
Q 014571          331 SNDEPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvD  352 (422)
                                 ..+.||.|++-
T Consensus        91 -----------~~~~fD~v~~~  101 (261)
T 3ege_A           91 -----------PDKSVDGVISI  101 (261)
T ss_dssp             -----------CTTCBSEEEEE
T ss_pred             -----------CCCCEeEEEEc
Confidence                       13568999873

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=98.03  E-value=1.8e-05  Score=72.73  Aligned_cols=102  Identities=13%  Similarity=0.089  Sum_probs=73.7

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .++.+|||+|||+|..+..+++..   .+|+++|+++.+++.+++++     .++.++.+|....+.             
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~---~~v~~~D~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-------------   97 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF---GDTAGLELSEDMLTHARKRL-----PDATLHQGDMRDFRL-------------   97 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH---SEEEEEESCHHHHHHHHHHC-----TTCEEEECCTTTCCC-------------
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhC-----CCCEEEECCHHHccc-------------
Confidence            578899999999999999999874   38999999999999998863     568899998865321             


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                         .+.||.|++    + .+.+.           +.+.       .....++|+++.. |+.+|.++++.
T Consensus        98 ---~~~~D~v~~----~-~~~~~-----------~~~~-------~~~~~~~l~~~~~~L~pgG~l~~~~  141 (239)
T 3bxo_A           98 ---GRKFSAVVS----M-FSSVG-----------YLKT-------TEELGAAVASFAEHLEPGGVVVVEP  141 (239)
T ss_dssp             ---SSCEEEEEE----C-TTGGG-----------GCCS-------HHHHHHHHHHHHHTEEEEEEEEECC
T ss_pred             ---CCCCcEEEE----c-CchHh-----------hcCC-------HHHHHHHHHHHHHhcCCCeEEEEEe
Confidence               346899985    1 12211           1111       1134566776654 89999999963

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=98.03  E-value=9.2e-06  Score=73.27  Aligned_cols=109  Identities=12%  Similarity=-0.001  Sum_probs=76.5

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      ...++.+|||++||+|..+..++...  ..+|+++|.|+.+++.++++++..+ .++.+.++|+...+.           
T Consensus        20 ~~~~~~~vLDiGcG~G~~~~~~~~~~--~~~v~~vD~s~~~~~~a~~~~~~~~-~~~~~~~~d~~~~~~-----------   85 (209)
T 2p8j_A           20 ESNLDKTVLDCGAGGDLPPLSIFVED--GYKTYGIEISDLQLKKAENFSRENN-FKLNISKGDIRKLPF-----------   85 (209)
T ss_dssp             HSSSCSEEEEESCCSSSCTHHHHHHT--TCEEEEEECCHHHHHHHHHHHHHHT-CCCCEEECCTTSCCS-----------
T ss_pred             ccCCCCEEEEECCCCCHHHHHHHHhC--CCEEEEEECCHHHHHHHHHHHHhcC-CceEEEECchhhCCC-----------
Confidence            45678999999999999866555442  4699999999999999999998877 468889999875421           


Q ss_pred             cCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehhh
Q 014571          338 CNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTAL  409 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~~  409 (422)
                          ..+.||.|++.      +.+.          .+.+         .-..++|+++.. |+.+|.++++.+
T Consensus        86 ----~~~~fD~v~~~------~~l~----------~~~~---------~~~~~~l~~~~~~LkpgG~l~~~~~  129 (209)
T 2p8j_A           86 ----KDESMSFVYSY------GTIF----------HMRK---------NDVKEAIDEIKRVLKPGGLACINFL  129 (209)
T ss_dssp             ----CTTCEEEEEEC------SCGG----------GSCH---------HHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             ----CCCceeEEEEc------ChHH----------hCCH---------HHHHHHHHHHHHHcCCCcEEEEEEe
Confidence                13568999862      2211          1110         123455666544 899999998543

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=98.03  E-value=8.7e-06  Score=80.33  Aligned_cols=80  Identities=20%  Similarity=0.101  Sum_probs=65.3

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCc
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      +...++.+|||++||+|..+..+++.  +..+|+|+|.+ .+++.++++++..|+. +|+++.+|+.....         
T Consensus        34 ~~~~~~~~VLDiGcGtG~ls~~la~~--g~~~v~~vD~s-~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------  101 (328)
T 1g6q_1           34 KDLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMS-SIIEMAKELVELNGFSDKITLLRGKLEDVHL---------  101 (328)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESS-THHHHHHHHHHHTTCTTTEEEEESCTTTSCC---------
T ss_pred             HhhcCCCEEEEecCccHHHHHHHHHC--CCCEEEEEChH-HHHHHHHHHHHHcCCCCCEEEEECchhhccC---------
Confidence            34567899999999999999988886  34699999999 6999999999999985 59999999876421         


Q ss_pred             cccCCCCCCCCCceeecCC
Q 014571          336 NMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaP  354 (422)
                            ..+.||.|+++.+
T Consensus       102 ------~~~~~D~Ivs~~~  114 (328)
T 1g6q_1          102 ------PFPKVDIIISEWM  114 (328)
T ss_dssp             ------SSSCEEEEEECCC
T ss_pred             ------CCCcccEEEEeCc
Confidence                  1256899998765

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=98.02  E-value=3.2e-06  Score=89.49  Aligned_cols=104  Identities=13%  Similarity=0.109  Sum_probs=78.6

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCC--------------CcEEEEEcCChHHHHHHHHH
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD--------------EGEVVAVDRSHNKVMDIQKL  305 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~--------------~g~V~A~D~s~~rl~~l~~~  305 (422)
                      .|.||--..-+.+.+.++.|++| +|||.|||+|+....++..+..              ...++|+|+++..++.++.|
T Consensus       224 ~G~fyTP~~Vv~lmv~ll~p~~~-~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~N  302 (544)
T 3khk_A          224 GGQYYTPKSIVTLIVEMLEPYKG-RVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMN  302 (544)
T ss_dssp             STTTCCCHHHHHHHHHHHCCCSE-EEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHH
T ss_pred             CCeEeCCHHHHHHHHHHHhcCCC-eEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHH
Confidence            45555545556777888899888 9999999999998887665421              35899999999999999999


Q ss_pred             HHHhCCc-ceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcccc
Q 014571          306 AAEMGLK-CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       306 l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                      +...|+. ++.+.++|+...+.              .....||.|+.+||-+..
T Consensus       303 l~l~gi~~~i~i~~gDtL~~~~--------------~~~~~fD~Iv~NPPf~~~  342 (544)
T 3khk_A          303 MVIRGIDFNFGKKNADSFLDDQ--------------HPDLRADFVMTNPPFNMK  342 (544)
T ss_dssp             HHHTTCCCBCCSSSCCTTTSCS--------------CTTCCEEEEEECCCSSCC
T ss_pred             HHHhCCCcccceeccchhcCcc--------------cccccccEEEECCCcCCc
Confidence            9988874 34446677653210              113579999999999874

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.02  E-value=1.3e-05  Score=77.24  Aligned_cols=62  Identities=11%  Similarity=0.033  Sum_probs=47.4

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcC-ChHHHHHHHHHH-----HHhCCc-----ceEEEecchh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR-SHNKVMDIQKLA-----AEMGLK-----CITTYKLDAL  322 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~-s~~rl~~l~~~l-----~r~g~~-----nv~~~~~Da~  322 (422)
                      ..+|.+|||+|||+|..+..++..  +.++|+++|+ ++..++.+++|+     +..|+.     ++.+...|..
T Consensus        77 ~~~~~~vLDlG~G~G~~~~~~a~~--~~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~  149 (281)
T 3bzb_A           77 LIAGKTVCELGAGAGLVSIVAFLA--GADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWG  149 (281)
T ss_dssp             GTTTCEEEETTCTTSHHHHHHHHT--TCSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTT
T ss_pred             hcCCCeEEEecccccHHHHHHHHc--CCCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCC
Confidence            457889999999999999988875  2359999999 899999999999     666664     6888766543

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=98.02  E-value=8.9e-06  Score=75.01  Aligned_cols=80  Identities=18%  Similarity=0.073  Sum_probs=63.4

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      .+...+...++.+|||+|||+|..+..+++.  +..+|+++|+++.+++.++++...   .++.++++|....+.     
T Consensus        34 ~l~~~~~~~~~~~vLdiG~G~G~~~~~l~~~--~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~d~~~~~~-----  103 (243)
T 3bkw_A           34 ALRAMLPEVGGLRIVDLGCGFGWFCRWAHEH--GASYVLGLDLSEKMLARARAAGPD---TGITYERADLDKLHL-----  103 (243)
T ss_dssp             HHHHHSCCCTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHTSCS---SSEEEEECCGGGCCC-----
T ss_pred             HHHHhccccCCCEEEEEcCcCCHHHHHHHHC--CCCeEEEEcCCHHHHHHHHHhccc---CCceEEEcChhhccC-----
Confidence            4566777788999999999999999999987  234999999999999999876543   468999999876431     


Q ss_pred             CCCccccCCCCCCCCCceee
Q 014571          332 NDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLv  351 (422)
                                ..+.||.|++
T Consensus       104 ----------~~~~fD~v~~  113 (243)
T 3bkw_A          104 ----------PQDSFDLAYS  113 (243)
T ss_dssp             ----------CTTCEEEEEE
T ss_pred             ----------CCCCceEEEE
Confidence                      1346898886

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=97.99  E-value=1.4e-05  Score=84.84  Aligned_cols=76  Identities=14%  Similarity=0.069  Sum_probs=64.6

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      ..+-+|||++||.|-.|..||++   .+.|+++|.++..++.++..++..|..+|.+.++|+..+....           
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~---ga~V~giD~~~~~i~~a~~~a~~~~~~~~~~~~~~~~~~~~~~-----------  130 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASK---GATIVGIDFQQENINVCRALAEENPDFAAEFRVGRIEEVIAAL-----------  130 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHTSTTSEEEEEECCHHHHHHHC-----------
T ss_pred             CCCCeEEEECCCCcHHHHHHHhC---CCEEEEECCCHHHHHHHHHHHHhcCCCceEEEECCHHHHhhhc-----------
Confidence            34679999999999999999997   4799999999999999999999888778999999998764321           


Q ss_pred             CCCCCCCCceee
Q 014571          340 SKDNNYITSQTS  351 (422)
Q Consensus       340 ~~~~~~FD~VLv  351 (422)
                        ..+.||.|++
T Consensus       131 --~~~~fD~v~~  140 (569)
T 4azs_A          131 --EEGEFDLAIG  140 (569)
T ss_dssp             --CTTSCSEEEE
T ss_pred             --cCCCccEEEE
Confidence              1356999886

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=97.98  E-value=8e-06  Score=80.59  Aligned_cols=80  Identities=15%  Similarity=0.179  Sum_probs=65.6

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--CC--cceEEEecchhhhhhccCCCCCCc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--GL--KCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g~--~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      ..+.+|||+|||.|+-+..+++.. +.++|+++|+++..++.+++++...  |+  ++++++.+|+......        
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~-~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~--------  177 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHE-SVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN--------  177 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCT-TCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH--------
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcC-CCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh--------
Confidence            345799999999999999998863 4579999999999999999998765  33  5799999999876432        


Q ss_pred             cccCCCCCCCCCceeecCC
Q 014571          336 NMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaP  354 (422)
                            ..+.||.|++|++
T Consensus       178 ------~~~~fD~Ii~d~~  190 (314)
T 2b2c_A          178 ------HKNEFDVIITDSS  190 (314)
T ss_dssp             ------CTTCEEEEEECCC
T ss_pred             ------cCCCceEEEEcCC
Confidence                  1356999999986

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=97.98  E-value=5e-06  Score=79.40  Aligned_cols=122  Identities=12%  Similarity=0.028  Sum_probs=83.7

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC----cceEEEecchhhhhhc
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL----KCITTYKLDALKAVRR  327 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~----~nv~~~~~Da~~~~~~  327 (422)
                      .+...+...++.+|||+|||+|..+..+++.   ..+|+++|+|+.+++.+++++...+.    .++.+..+|+...+..
T Consensus        48 ~l~~~l~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  124 (293)
T 3thr_A           48 WLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKD  124 (293)
T ss_dssp             HHHHHHHHTTCCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHH
T ss_pred             HHHHHhcccCCCEEEEecCCCCHHHHHHHHC---CCeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccc
Confidence            4445556678899999999999999999987   34999999999999999998865442    4688888998776421


Q ss_pred             cCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          328 KNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                      .  .          ..+.||.|++    .|... .++   ++..       .    -......+|+++.. |+.+|.+++
T Consensus       125 ~--~----------~~~~fD~V~~----~g~~l-~~~---~~~~-------~----~~~~~~~~l~~~~~~LkpgG~l~~  173 (293)
T 3thr_A          125 V--P----------AGDGFDAVIC----LGNSF-AHL---PDSK-------G----DQSEHRLALKNIASMVRPGGLLVI  173 (293)
T ss_dssp             S--C----------CTTCEEEEEE----CTTCG-GGS---CCSS-------S----SSHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             c--c----------cCCCeEEEEE----cChHH-hhc---Cccc-------c----CHHHHHHHHHHHHHHcCCCeEEEE
Confidence            1  0          1356999997    11111 101   1110       0    01234567777755 899999998


Q ss_pred             h
Q 014571          407 T  407 (422)
Q Consensus       407 t  407 (422)
                      +
T Consensus       174 ~  174 (293)
T 3thr_A          174 D  174 (293)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.97  E-value=1.4e-05  Score=70.61  Aligned_cols=72  Identities=13%  Similarity=-0.000  Sum_probs=58.2

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +.++.+|||+|||+|..+..+++.   ..+++++|+++.+++.+++++     .++.++..|....+.            
T Consensus        44 ~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~~D~~~~~~~~a~~~~-----~~~~~~~~d~~~~~~------------  103 (195)
T 3cgg_A           44 APRGAKILDAGCGQGRIGGYLSKQ---GHDVLGTDLDPILIDYAKQDF-----PEARWVVGDLSVDQI------------  103 (195)
T ss_dssp             SCTTCEEEEETCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTTSCC------------
T ss_pred             ccCCCeEEEECCCCCHHHHHHHHC---CCcEEEEcCCHHHHHHHHHhC-----CCCcEEEcccccCCC------------
Confidence            468899999999999999999987   369999999999999998875     358888888765321            


Q ss_pred             CCCCCCCCCceeecC
Q 014571          339 NSKDNNYITSQTSDS  353 (422)
Q Consensus       339 ~~~~~~~FD~VLvDa  353 (422)
                         ..+.||.|++..
T Consensus       104 ---~~~~~D~i~~~~  115 (195)
T 3cgg_A          104 ---SETDFDLIVSAG  115 (195)
T ss_dssp             ---CCCCEEEEEECC
T ss_pred             ---CCCceeEEEECC
Confidence               134689999853

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=97.96  E-value=7.6e-06  Score=75.70  Aligned_cols=72  Identities=18%  Similarity=0.060  Sum_probs=59.0

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      ++.+|||++||+|..+..+++.   ..+|+++|+++.+++.+++++...+. .++.++++|+.....             
T Consensus        66 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~-------------  129 (235)
T 3lcc_A           66 PLGRALVPGCGGGHDVVAMASP---ERFVVGLDISESALAKANETYGSSPKAEYFSFVKEDVFTWRP-------------  129 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHCBT---TEEEEEECSCHHHHHHHHHHHTTSGGGGGEEEECCCTTTCCC-------------
T ss_pred             CCCCEEEeCCCCCHHHHHHHhC---CCeEEEEECCHHHHHHHHHHhhccCCCcceEEEECchhcCCC-------------
Confidence            3459999999999999988763   57899999999999999999887543 679999999876421             


Q ss_pred             CCCCCCCCceee
Q 014571          340 SKDNNYITSQTS  351 (422)
Q Consensus       340 ~~~~~~FD~VLv  351 (422)
                         ...||.|++
T Consensus       130 ---~~~fD~v~~  138 (235)
T 3lcc_A          130 ---TELFDLIFD  138 (235)
T ss_dssp             ---SSCEEEEEE
T ss_pred             ---CCCeeEEEE
Confidence               246898886

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=97.94  E-value=7.8e-05  Score=73.85  Aligned_cols=114  Identities=12%  Similarity=0.081  Sum_probs=84.6

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhcc
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRK  328 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~  328 (422)
                      ...+...++..++.+|||++||+|..+..+++.. +..+++++|+ +..++.+++++++.|+.+ ++++.+|....+.  
T Consensus       179 ~~~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~--  254 (359)
T 1x19_A          179 IQLLLEEAKLDGVKKMIDVGGGIGDISAAMLKHF-PELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESY--  254 (359)
T ss_dssp             HHHHHHHCCCTTCCEEEEESCTTCHHHHHHHHHC-TTCEEEEEEC-GGGHHHHHHHHHHTTCTTTEEEEECCTTTSCC--
T ss_pred             HHHHHHhcCCCCCCEEEEECCcccHHHHHHHHHC-CCCeEEEEec-HHHHHHHHHHHHhcCCCCCEEEEeCccccCCC--
Confidence            3445566677889999999999999999999985 4579999999 999999999999999865 9999999865321  


Q ss_pred             CCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          329 NESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       329 ~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                                    .. +|.|++.      ..          ...|..         +...++|+++.. ++.+|.+++.
T Consensus       255 --------------~~-~D~v~~~------~v----------lh~~~d---------~~~~~~l~~~~~~L~pgG~l~i~  294 (359)
T 1x19_A          255 --------------PE-ADAVLFC------RI----------LYSANE---------QLSTIMCKKAFDAMRSGGRLLIL  294 (359)
T ss_dssp             --------------CC-CSEEEEE------SC----------GGGSCH---------HHHHHHHHHHHTTCCTTCEEEEE
T ss_pred             --------------CC-CCEEEEe------ch----------hccCCH---------HHHHHHHHHHHHhcCCCCEEEEE
Confidence                          11 3888771      11          112322         234567777755 7999988763

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=97.94  E-value=1.5e-05  Score=71.82  Aligned_cols=67  Identities=15%  Similarity=0.071  Sum_probs=56.5

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCC
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSK  341 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~  341 (422)
                      +.+|||+|||+|..+..+++.   ..+|+++|+++.+++.++++     ..++.++++|+...+..              
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~-----~~~~~~~~~d~~~~~~~--------------   99 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL---GHQIEGLEPATRLVELARQT-----HPSVTFHHGTITDLSDS--------------   99 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT---TCCEEEECCCHHHHHHHHHH-----CTTSEEECCCGGGGGGS--------------
T ss_pred             CCeEEEecCCCCHHHHHHHhc---CCeEEEEeCCHHHHHHHHHh-----CCCCeEEeCcccccccC--------------
Confidence            889999999999999999987   35899999999999998886     35789999998875421              


Q ss_pred             CCCCCCceee
Q 014571          342 DNNYITSQTS  351 (422)
Q Consensus       342 ~~~~FD~VLv  351 (422)
                       .+.||.|++
T Consensus       100 -~~~fD~v~~  108 (203)
T 3h2b_A          100 -PKRWAGLLA  108 (203)
T ss_dssp             -CCCEEEEEE
T ss_pred             -CCCeEEEEe
Confidence             356899987

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=97.94  E-value=1.1e-05  Score=70.51  Aligned_cols=58  Identities=10%  Similarity=0.086  Sum_probs=50.9

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecc
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLD  320 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~D  320 (422)
                      ..+.+.++.+|||++||+|..+..+++..   .+|+++|+++.+++.++++     ..++++..+|
T Consensus        11 ~~~~~~~~~~vLDiG~G~G~~~~~l~~~~---~~v~~vD~s~~~~~~a~~~-----~~~v~~~~~d   68 (170)
T 3i9f_A           11 PNIFEGKKGVIVDYGCGNGFYCKYLLEFA---TKLYCIDINVIALKEVKEK-----FDSVITLSDP   68 (170)
T ss_dssp             HHHHSSCCEEEEEETCTTCTTHHHHHTTE---EEEEEECSCHHHHHHHHHH-----CTTSEEESSG
T ss_pred             HhcCcCCCCeEEEECCCCCHHHHHHHhhc---CeEEEEeCCHHHHHHHHHh-----CCCcEEEeCC
Confidence            34567889999999999999999999874   4999999999999999987     5679999888

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=97.91  E-value=1.5e-05  Score=73.54  Aligned_cols=72  Identities=17%  Similarity=0.073  Sum_probs=59.0

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +.++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.++++.   ...++.++++|+...+.            
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~------------  112 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT---GYKAVGVDISEVMIQKGKERG---EGPDLSFIKGDLSSLPF------------  112 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHTTT---CBTTEEEEECBTTBCSS------------
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhc---ccCCceEEEcchhcCCC------------
Confidence            357889999999999999999987   468999999999999998864   34679999999876431            


Q ss_pred             CCCCCCCCCceee
Q 014571          339 NSKDNNYITSQTS  351 (422)
Q Consensus       339 ~~~~~~~FD~VLv  351 (422)
                         ..+.||.|++
T Consensus       113 ---~~~~fD~v~~  122 (242)
T 3l8d_A          113 ---ENEQFEAIMA  122 (242)
T ss_dssp             ---CTTCEEEEEE
T ss_pred             ---CCCCccEEEE
Confidence               1356899986

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=97.91  E-value=2.1e-05  Score=71.39  Aligned_cols=69  Identities=13%  Similarity=0.068  Sum_probs=56.8

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      ...++.+|||++||+|..+..+++.   ..+|+++|+++.+++.+++++      ++.+..+|....+            
T Consensus        40 ~~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~~------~~~~~~~d~~~~~------------   98 (211)
T 3e23_A           40 ELPAGAKILELGCGAGYQAEAMLAA---GFDVDATDGSPELAAEASRRL------GRPVRTMLFHQLD------------   98 (211)
T ss_dssp             TSCTTCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHH------TSCCEECCGGGCC------------
T ss_pred             hcCCCCcEEEECCCCCHHHHHHHHc---CCeEEEECCCHHHHHHHHHhc------CCceEEeeeccCC------------
Confidence            4567899999999999999999987   469999999999999999886      4567778876543            


Q ss_pred             cCCCCCCCCCceee
Q 014571          338 CNSKDNNYITSQTS  351 (422)
Q Consensus       338 ~~~~~~~~FD~VLv  351 (422)
                          ..+.||.|++
T Consensus        99 ----~~~~fD~v~~  108 (211)
T 3e23_A           99 ----AIDAYDAVWA  108 (211)
T ss_dssp             ----CCSCEEEEEE
T ss_pred             ----CCCcEEEEEe
Confidence                1356899987

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=97.91  E-value=1.7e-05  Score=80.96  Aligned_cols=108  Identities=13%  Similarity=0.088  Sum_probs=76.1

Q ss_pred             CCCeEEEecCC------CChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCC
Q 014571          261 KGERILDMCAA------PGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       261 pg~~VLD~CAg------pGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~  334 (422)
                      ++.+|||++||      +||-++.+++...+.++|+++|+++.+.         ....+|+++++|+...+......   
T Consensus       216 ~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~---------~~~~rI~fv~GDa~dlpf~~~l~---  283 (419)
T 3sso_A          216 QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSH---------VDELRIRTIQGDQNDAEFLDRIA---  283 (419)
T ss_dssp             SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGG---------GCBTTEEEEECCTTCHHHHHHHH---
T ss_pred             CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHh---------hcCCCcEEEEecccccchhhhhh---
Confidence            56899999999      8888999987655678999999999862         23468999999998754320000   


Q ss_pred             ccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehhhHHHH
Q 014571          335 PNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTALIESF  413 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~~~~~~  413 (422)
                            ...+.||.|++|.    . .            .|           .-|...|+.+.. ||.+|++++.+...|+
T Consensus       284 ------~~d~sFDlVisdg----s-H------------~~-----------~d~~~aL~el~rvLKPGGvlVi~Dl~tsy  329 (419)
T 3sso_A          284 ------RRYGPFDIVIDDG----S-H------------IN-----------AHVRTSFAALFPHVRPGGLYVIEDMWTAY  329 (419)
T ss_dssp             ------HHHCCEEEEEECS----C-C------------CH-----------HHHHHHHHHHGGGEEEEEEEEEECGGGGG
T ss_pred             ------cccCCccEEEECC----c-c------------cc-----------hhHHHHHHHHHHhcCCCeEEEEEeccccc
Confidence                  0025699998752    1 2            01           123345666655 8999999998877776


Q ss_pred             H
Q 014571          414 L  414 (422)
Q Consensus       414 ~  414 (422)
                      |
T Consensus       330 ~  330 (419)
T 3sso_A          330 W  330 (419)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2q07_A Uncharacterized protein AF0587; monomer, structural genomics, PSI-2, protein structure initiative; 2.04A {Archaeoglobus fulgidus dsm 4304} SCOP: b.122.1.1 c.18.1.4 d.17.6.5

Probab=97.89  E-value=6.7e-06  Score=81.00  Aligned_cols=68  Identities=22%  Similarity=0.402  Sum_probs=57.9

Q ss_pred             CCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEE
Q 014571          123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI  202 (422)
Q Consensus       123 ~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~V  202 (422)
                      .+.|+||+    +|+.| +||+|||+.++.++++||.|.| .                                 .+..+
T Consensus       230 ~~~V~Vd~----~v~~G-~v~~pGv~~~~~~i~~gd~V~V-~---------------------------------~g~~v  270 (306)
T 2q07_A          230 IYTVEIGD----FEVKG-TIFAGGVLRADEKIRPNDVVVF-H---------------------------------NSRIF  270 (306)
T ss_dssp             CSEEEECS----SCCCS-EEEGGGEEEECTTCCTTCEEEE-E---------------------------------CSSCE
T ss_pred             CCEEEEcc----cccCC-ceeCCeeEeCCCCcCCCCEEEE-E---------------------------------CCEEE
Confidence            38999998    78899 9999999999999999999998 3                                 14578


Q ss_pred             EEccCccCHHHHhcccCcceeeccccc
Q 014571          203 GQGTAMMSRAGIFRASEGIAVDMHNRI  229 (422)
Q Consensus       203 rvg~a~msreel~~~~~GiaV~~~~~~  229 (422)
                      ++|++.||.++|.+..+|++++....+
T Consensus       271 avG~a~ms~~em~~~~kG~aV~v~~~~  297 (306)
T 2q07_A          271 GVGLAAMSGKEMAGSEKGIAINVKRKF  297 (306)
T ss_dssp             EEEEESSCHHHHSCC--CEEEEEEEEE
T ss_pred             EEEEEeeCHHHHhhcCCceEEEEEEEc
Confidence            999999999999999999999876443

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=97.88  E-value=2.1e-05  Score=82.98  Aligned_cols=110  Identities=18%  Similarity=0.173  Sum_probs=83.9

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCC------------CcEEEEEcCChHHHHHHHHHHH
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRD------------EGEVVAVDRSHNKVMDIQKLAA  307 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~------------~g~V~A~D~s~~rl~~l~~~l~  307 (422)
                      .|.||-=..-+.+.+.+++|++|++|+|-|||+||..+.+.+.+..            ...+++.|+++.....++-|+-
T Consensus       196 ~GqfyTP~~Vv~lmv~l~~p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~  275 (530)
T 3ufb_A          196 SGEFYTPRPVVRFMVEVMDPQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL  275 (530)
T ss_dssp             CCCCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH
T ss_pred             CceECCcHHHHHHHHHhhccCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH
Confidence            4665544445567788999999999999999999998887765532            2469999999999999999998


Q ss_pred             HhCCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571          308 EMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       308 r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      -.|...-.+..+|+...+....           .....||.|+..||-++...
T Consensus       276 lhg~~~~~I~~~dtL~~~~~~~-----------~~~~~fD~Il~NPPf~~~~~  317 (530)
T 3ufb_A          276 LHGLEYPRIDPENSLRFPLREM-----------GDKDRVDVILTNPPFGGEEE  317 (530)
T ss_dssp             HHTCSCCEEECSCTTCSCGGGC-----------CGGGCBSEEEECCCSSCBCC
T ss_pred             hcCCccccccccccccCchhhh-----------cccccceEEEecCCCCcccc
Confidence            8888766777888764332111           11357999999999987644

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=97.86  E-value=1.7e-05  Score=75.84  Aligned_cols=92  Identities=12%  Similarity=0.079  Sum_probs=66.3

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      ..+..+++++|++|||+|||+|..|. ++.  ...++|+|+|+++.+++.++++++..  .+++++++|+.+.+......
T Consensus        12 ~iv~~~~~~~~~~VLEIG~G~G~lt~-l~~--~~~~~v~avEid~~~~~~a~~~~~~~--~~v~~i~~D~~~~~~~~~~~   86 (252)
T 1qyr_A           12 SIVSAINPQKGQAMVEIGPGLAALTE-PVG--ERLDQLTVIELDRDLAARLQTHPFLG--PKLTIYQQDAMTFNFGELAE   86 (252)
T ss_dssp             HHHHHHCCCTTCCEEEECCTTTTTHH-HHH--TTCSCEEEECCCHHHHHHHHTCTTTG--GGEEEECSCGGGCCHHHHHH
T ss_pred             HHHHhcCCCCcCEEEEECCCCcHHHH-hhh--CCCCeEEEEECCHHHHHHHHHHhccC--CceEEEECchhhCCHHHhhc
Confidence            45566788999999999999999999 654  22334999999999999999887543  58999999998764321000


Q ss_pred             CCCccccCCCCCCCCCceeecCCcccc
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                                ..+..|.|+...|-.-+
T Consensus        87 ----------~~~~~~~vvsNlPY~i~  103 (252)
T 1qyr_A           87 ----------KMGQPLRVFGNLPYNIS  103 (252)
T ss_dssp             ----------HHTSCEEEEEECCTTTH
T ss_pred             ----------ccCCceEEEECCCCCcc
Confidence                      00124677777776543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=97.85  E-value=1.6e-05  Score=73.01  Aligned_cols=59  Identities=15%  Similarity=0.157  Sum_probs=50.1

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      ..++.+|||++||+|..+..+++..   .+|+++|+++.+++.+++++..    ++.++++|+...
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~gvD~s~~~~~~a~~~~~~----~v~~~~~d~~~~   98 (250)
T 2p7i_A           40 FFRPGNLLELGSFKGDFTSRLQEHF---NDITCVEASEEAISHAQGRLKD----GITYIHSRFEDA   98 (250)
T ss_dssp             GCCSSCEEEESCTTSHHHHHHTTTC---SCEEEEESCHHHHHHHHHHSCS----CEEEEESCGGGC
T ss_pred             hcCCCcEEEECCCCCHHHHHHHHhC---CcEEEEeCCHHHHHHHHHhhhC----CeEEEEccHHHc
Confidence            3578899999999999999998863   3799999999999999887543    789999998764

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=97.85  E-value=1.5e-05  Score=78.88  Aligned_cols=80  Identities=9%  Similarity=-0.092  Sum_probs=64.4

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD  342 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~  342 (422)
                      .+|||++||.|+.+..+++... ..+|+++|+++..++.+++++...+-.+++++.+|++.+....             .
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p-~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~-------------~  156 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYP-QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF-------------T  156 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHST-TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC-------------C
T ss_pred             CEEEEEECCcCHHHHHHHHHCC-CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc-------------c
Confidence            4999999999999999998653 4699999999999999999865443467999999999875321             1


Q ss_pred             CCCCCceeecCCcc
Q 014571          343 NNYITSQTSDSMKL  356 (422)
Q Consensus       343 ~~~FD~VLvDaPCS  356 (422)
                      .+.||.|++|++..
T Consensus       157 ~~~fDvIi~D~~~~  170 (317)
T 3gjy_A          157 PASRDVIIRDVFAG  170 (317)
T ss_dssp             TTCEEEEEECCSTT
T ss_pred             CCCCCEEEECCCCc
Confidence            35699999997543

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=97.84  E-value=3.8e-05  Score=75.16  Aligned_cols=106  Identities=10%  Similarity=0.043  Sum_probs=79.7

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCcc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      +..++.+|||++||+|..+..+++.. +..+++++|+ +..++.+++++...|+ .+|++..+|.....           
T Consensus       166 ~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~-----------  232 (332)
T 3i53_A          166 DWAALGHVVDVGGGSGGLLSALLTAH-EDLSGTVLDL-QGPASAAHRRFLDTGLSGRAQVVVGSFFDPL-----------  232 (332)
T ss_dssp             CCGGGSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC-----------
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHC-CCCeEEEecC-HHHHHHHHHhhhhcCcCcCeEEecCCCCCCC-----------
Confidence            44567899999999999999999876 4578999999 9999999999999987 57999999975210           


Q ss_pred             ccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          337 MCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                            +..||.|++    +.  .          ...|..         +.+.++|+++.. |+.+|.++++
T Consensus       233 ------p~~~D~v~~----~~--v----------lh~~~~---------~~~~~~l~~~~~~L~pgG~l~i~  273 (332)
T 3i53_A          233 ------PAGAGGYVL----SA--V----------LHDWDD---------LSAVAILRRCAEAAGSGGVVLVI  273 (332)
T ss_dssp             ------CCSCSEEEE----ES--C----------GGGSCH---------HHHHHHHHHHHHHHTTTCEEEEE
T ss_pred             ------CCCCcEEEE----eh--h----------hccCCH---------HHHHHHHHHHHHhcCCCCEEEEE
Confidence                  125898886    11  1          112332         135677877755 7999999884

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=97.83  E-value=0.00013  Score=72.72  Aligned_cols=110  Identities=13%  Similarity=0.091  Sum_probs=83.1

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~  331 (422)
                      +...++..++.+|||++||+|..+..+++.. +..+++++|+ +..++.+++++...|+ .+|++..+|.....      
T Consensus       194 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~l~~~v~~~~~d~~~~~------  265 (369)
T 3gwz_A          194 VAAAYDFSGAATAVDIGGGRGSLMAAVLDAF-PGLRGTLLER-PPVAEEARELLTGRGLADRCEILPGDFFETI------  265 (369)
T ss_dssp             HHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTTCC------
T ss_pred             HHHhCCCccCcEEEEeCCCccHHHHHHHHHC-CCCeEEEEcC-HHHHHHHHHhhhhcCcCCceEEeccCCCCCC------
Confidence            3445567788999999999999999999985 4579999999 9999999999999987 56999999976210      


Q ss_pred             CCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                                 +..||.|++-      ..          ...|..         +.+.++|+++.. ++.+|.+++
T Consensus       266 -----------p~~~D~v~~~------~v----------lh~~~d---------~~~~~~L~~~~~~L~pgG~l~i  305 (369)
T 3gwz_A          266 -----------PDGADVYLIK------HV----------LHDWDD---------DDVVRILRRIATAMKPDSRLLV  305 (369)
T ss_dssp             -----------CSSCSEEEEE------SC----------GGGSCH---------HHHHHHHHHHHTTCCTTCEEEE
T ss_pred             -----------CCCceEEEhh------hh----------hccCCH---------HHHHHHHHHHHHHcCCCCEEEE
Confidence                       1258988761      11          112322         134578888855 899999888

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=97.82  E-value=2.2e-05  Score=73.88  Aligned_cols=101  Identities=12%  Similarity=0.028  Sum_probs=72.1

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .++.+|||+|||+|..+..+++.   ..+|+++|+++.+++.+++++.     ++.++++|+...+.             
T Consensus        49 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~~~-----~~~~~~~d~~~~~~-------------  107 (263)
T 3pfg_A           49 PKAASLLDVACGTGMHLRHLADS---FGTVEGLELSADMLAIARRRNP-----DAVLHHGDMRDFSL-------------  107 (263)
T ss_dssp             TTCCEEEEETCTTSHHHHHHTTT---SSEEEEEESCHHHHHHHHHHCT-----TSEEEECCTTTCCC-------------
T ss_pred             CCCCcEEEeCCcCCHHHHHHHHc---CCeEEEEECCHHHHHHHHhhCC-----CCEEEECChHHCCc-------------
Confidence            46789999999999999999887   3589999999999999988743     68899999876421             


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                         .+.||.|++..     +.+.           +.+.       .....++|+++.. |+.+|.++++
T Consensus       108 ---~~~fD~v~~~~-----~~l~-----------~~~~-------~~~~~~~l~~~~~~L~pgG~l~i~  150 (263)
T 3pfg_A          108 ---GRRFSAVTCMF-----SSIG-----------HLAG-------QAELDAALERFAAHVLPDGVVVVE  150 (263)
T ss_dssp             ---SCCEEEEEECT-----TGGG-----------GSCH-------HHHHHHHHHHHHHTEEEEEEEEEC
T ss_pred             ---cCCcCEEEEcC-----chhh-----------hcCC-------HHHHHHHHHHHHHhcCCCcEEEEE
Confidence               35689998621     1211           1110       1123455665644 7899999885

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=97.81  E-value=6.7e-05  Score=74.34  Aligned_cols=70  Identities=24%  Similarity=0.190  Sum_probs=61.0

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhh
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK  323 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~  323 (422)
                      .+...++..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.+++++...|+. +|+++.+|...
T Consensus       173 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  243 (374)
T 1qzz_A          173 APADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFK  243 (374)
T ss_dssp             HHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHhCCCCCCCEEEEECCCcCHHHHHHHHHC-CCCEEEEEeC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence            34556677889999999999999999999986 4579999999 99999999999999985 79999999754

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=97.80  E-value=5.2e-05  Score=73.81  Aligned_cols=69  Identities=20%  Similarity=0.179  Sum_probs=59.6

Q ss_pred             HHHhcCC--CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhh
Q 014571          253 TAHALDP--QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK  323 (422)
Q Consensus       253 v~~~L~p--~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~  323 (422)
                      +...++.  .++.+|||+|||+|..+..+++.. +..+++++|++ ..++.+++++.+.|+. +++++.+|..+
T Consensus       155 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~~-~~~~~a~~~~~~~~~~~~v~~~~~d~~~  226 (335)
T 2r3s_A          155 IAQLVNENKIEPLKVLDISASHGLFGIAVAQHN-PNAEIFGVDWA-SVLEVAKENARIQGVASRYHTIAGSAFE  226 (335)
T ss_dssp             HHHHHTC--CCCSEEEEETCTTCHHHHHHHHHC-TTCEEEEEECH-HHHHHHHHHHHHHTCGGGEEEEESCTTT
T ss_pred             HHHhcccccCCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEEecH-HHHHHHHHHHHhcCCCcceEEEeccccc
Confidence            3344566  788999999999999999999986 45799999999 9999999999999985 59999999865

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=97.79  E-value=3.1e-05  Score=70.13  Aligned_cols=80  Identities=18%  Similarity=0.054  Sum_probs=60.1

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      ....+...++.+|||++||+|..+..+++.   ..+|+++|+++.+++.++++      .++.+...|.........   
T Consensus        44 ~~~~~~~~~~~~vLdiG~G~G~~~~~l~~~---~~~v~~vD~s~~~~~~a~~~------~~~~~~~~~~~~~~~~~~---  111 (227)
T 3e8s_A           44 ILLAILGRQPERVLDLGCGEGWLLRALADR---GIEAVGVDGDRTLVDAARAA------GAGEVHLASYAQLAEAKV---  111 (227)
T ss_dssp             HHHHHHHTCCSEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHT------CSSCEEECCHHHHHTTCS---
T ss_pred             HHHHhhcCCCCEEEEeCCCCCHHHHHHHHC---CCEEEEEcCCHHHHHHHHHh------cccccchhhHHhhccccc---
Confidence            344445567799999999999999999987   46899999999999999886      456788888876532110   


Q ss_pred             CCccccCCCCCCCCCceeec
Q 014571          333 DEPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvD  352 (422)
                              .....||.|++.
T Consensus       112 --------~~~~~fD~v~~~  123 (227)
T 3e8s_A          112 --------PVGKDYDLICAN  123 (227)
T ss_dssp             --------CCCCCEEEEEEE
T ss_pred             --------ccCCCccEEEEC
Confidence                    113458999873

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=97.78  E-value=3.6e-05  Score=72.56  Aligned_cols=71  Identities=18%  Similarity=0.127  Sum_probs=57.2

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .++.+|||++||+|..+..+++.++ .++|+++|+++.+++.++++.     .++.+..+|+...+.             
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~~-~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~-------------  144 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADALP-EITTFGLDVSKVAIKAAAKRY-----PQVTFCVASSHRLPF-------------  144 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCT-TSEEEEEESCHHHHHHHHHHC-----TTSEEEECCTTSCSB-------------
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcchhhCCC-------------
Confidence            6889999999999999999999863 469999999999999888763     467888888765421             


Q ss_pred             CCCCCCCCceee
Q 014571          340 SKDNNYITSQTS  351 (422)
Q Consensus       340 ~~~~~~FD~VLv  351 (422)
                        ..+.||.|++
T Consensus       145 --~~~~fD~v~~  154 (269)
T 1p91_A          145 --SDTSMDAIIR  154 (269)
T ss_dssp             --CTTCEEEEEE
T ss_pred             --CCCceeEEEE
Confidence              1246898885

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=97.78  E-value=2.8e-05  Score=72.22  Aligned_cols=69  Identities=16%  Similarity=0.162  Sum_probs=56.0

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      .+++.+|||++||+|..+..+++.   ..+|+++|+|+.+++.++++        +.++.+|........          
T Consensus        39 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~~~~a~~~--------~~~~~~d~~~~~~~~----------   97 (240)
T 3dli_A           39 FKGCRRVLDIGCGRGEFLELCKEE---GIESIGVDINEDMIKFCEGK--------FNVVKSDAIEYLKSL----------   97 (240)
T ss_dssp             TTTCSCEEEETCTTTHHHHHHHHH---TCCEEEECSCHHHHHHHHTT--------SEEECSCHHHHHHTS----------
T ss_pred             hcCCCeEEEEeCCCCHHHHHHHhC---CCcEEEEECCHHHHHHHHhh--------cceeeccHHHHhhhc----------
Confidence            568899999999999999999887   35799999999999988876        778888987753211          


Q ss_pred             CCCCCCCCCceee
Q 014571          339 NSKDNNYITSQTS  351 (422)
Q Consensus       339 ~~~~~~~FD~VLv  351 (422)
                         ..+.||.|++
T Consensus        98 ---~~~~fD~i~~  107 (240)
T 3dli_A           98 ---PDKYLDGVMI  107 (240)
T ss_dssp             ---CTTCBSEEEE
T ss_pred             ---CCCCeeEEEE
Confidence               1356899987

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.77  E-value=4.3e-05  Score=77.34  Aligned_cols=62  Identities=19%  Similarity=0.156  Sum_probs=52.7

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhh
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA  324 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~  324 (422)
                      .+|.+|||++||+|-.+..+|+.  +..+|+|+|.++ +++.++++++..|+.+ |+++.+|++.+
T Consensus        82 ~~~k~VLDvG~GtGiLs~~Aa~a--GA~~V~ave~s~-~~~~a~~~~~~n~~~~~i~~i~~~~~~~  144 (376)
T 4hc4_A           82 LRGKTVLDVGAGTGILSIFCAQA--GARRVYAVEASA-IWQQAREVVRFNGLEDRVHVLPGPVETV  144 (376)
T ss_dssp             HTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEECST-THHHHHHHHHHTTCTTTEEEEESCTTTC
T ss_pred             cCCCEEEEeCCCccHHHHHHHHh--CCCEEEEEeChH-HHHHHHHHHHHcCCCceEEEEeeeeeee
Confidence            37899999999999988777765  245899999995 8999999999999854 99999998764

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=97.77  E-value=1.9e-05  Score=79.65  Aligned_cols=78  Identities=21%  Similarity=0.191  Sum_probs=59.8

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +++|++|||+||+|||.|..+++.   .++|+|+|+.+     +...+.  ..++|++++.|+.....            
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~r---g~~V~aVD~~~-----l~~~l~--~~~~V~~~~~d~~~~~~------------  266 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKR---NMWVYSVDNGP-----MAQSLM--DTGQVTWLREDGFKFRP------------  266 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHT---TCEEEEECSSC-----CCHHHH--TTTCEEEECSCTTTCCC------------
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHC---CCEEEEEEhhh-----cChhhc--cCCCeEEEeCccccccC------------
Confidence            679999999999999999999887   58999999763     112222  24679999999876431            


Q ss_pred             CCCCCCCCCceeecCCccccCch
Q 014571          339 NSKDNNYITSQTSDSMKLHKEVP  361 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~l  361 (422)
                         ....||.|++|--|.-++.+
T Consensus       267 ---~~~~~D~vvsDm~~~p~~~~  286 (375)
T 4auk_A          267 ---TRSNISWMVCDMVEKPAKVA  286 (375)
T ss_dssp             ---CSSCEEEEEECCSSCHHHHH
T ss_pred             ---CCCCcCEEEEcCCCChHHhH
Confidence               12468999999988877764

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=97.77  E-value=4.4e-05  Score=73.05  Aligned_cols=46  Identities=9%  Similarity=0.151  Sum_probs=36.1

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHH
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA  307 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~  307 (422)
                      .+|.+|||+|||+|. +..++... ...+|+|+|+|+.+++.++++++
T Consensus        70 ~~~~~vLDiGcG~G~-~~~l~~~~-~~~~v~gvD~s~~~l~~a~~~~~  115 (289)
T 2g72_A           70 VSGRTLIDIGSGPTV-YQLLSACS-HFEDITMTDFLEVNRQELGRWLQ  115 (289)
T ss_dssp             SCCSEEEEETCTTCC-GGGTTGGG-GCSEEEEECSCHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcCh-HHHHhhcc-CCCeEEEeCCCHHHHHHHHHHHh
Confidence            378999999999999 44333332 23599999999999999988664

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=97.76  E-value=4.1e-05  Score=75.18  Aligned_cols=71  Identities=23%  Similarity=0.434  Sum_probs=58.8

Q ss_pred             cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571           13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS   92 (422)
Q Consensus        13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (422)
                      .++++.+.+.+.+.|| +.++++++++..||. .++||||+|++++++++.|.+.         |             +.
T Consensus        14 ~~~P~w~~~~~~~~~g-~~~~~~~~~~~~~~p-~~~RvN~~k~~~~~~~~~L~~~---------g-------------~~   69 (315)
T 1ixk_A           14 LGYSKLFADRYFQLWG-ERAIRIAEAMEKPLP-RCFRVNTLKISVQDLVKRLNKK---------G-------------FQ   69 (315)
T ss_dssp             TTCCHHHHHHHHHHHT-THHHHHHHHTTSCCC-CEEEECTTTSCHHHHHHHHHHT---------T-------------CE
T ss_pred             hCCcHHHHHHHHHHcc-HHHHHHHHHcCCCCC-eEEEEeCCCCCHHHHHHHHHhC---------C-------------Ce
Confidence            4578899999999999 779999999999877 5699999999999999988754         3             34


Q ss_pred             cccCCCCCcEEEEeC
Q 014571           93 ESQIPGLEYVVFVKG  107 (422)
Q Consensus        93 ~~~~~~l~~~l~~~~  107 (422)
                      ..+.|+.++.++++.
T Consensus        70 ~~~~~~~~~~~~~~~   84 (315)
T 1ixk_A           70 FKRVPWAKEGFCLTR   84 (315)
T ss_dssp             EEEETTEEEEEEEEE
T ss_pred             eeECCCCCceEEEeC
Confidence            456778888888753

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=97.73  E-value=7.1e-05  Score=72.44  Aligned_cols=114  Identities=18%  Similarity=0.121  Sum_probs=75.5

Q ss_pred             CCCeEEEecCCCCh----hHHHHHhccCC---CcEEEEEcCChHHHHHHHHHH--------------HHh---------C
Q 014571          261 KGERILDMCAAPGG----KTTAIASLLRD---EGEVVAVDRSHNKVMDIQKLA--------------AEM---------G  310 (422)
Q Consensus       261 pg~~VLD~CAgpGg----KT~~la~l~~~---~g~V~A~D~s~~rl~~l~~~l--------------~r~---------g  310 (422)
                      ++.+|||+|||+|-    .+..+++.++.   ..+|+|+|+|+.+++.+++++              +++         |
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            45799999999998    45555665442   359999999999999999874              111         1


Q ss_pred             ---C-----cceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccc
Q 014571          311 ---L-----KCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCG  382 (422)
Q Consensus       311 ---~-----~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~  382 (422)
                         +     .+|.+.++|....+.     +         ..+.||.|+|    ..  .          ...+.       
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~-----~---------~~~~fDlI~c----rn--v----------liyf~-------  227 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQY-----N---------VPGPFDAIFC----RN--V----------MIYFD-------  227 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSC-----C---------CCCCEEEEEE----CS--S----------GGGSC-------
T ss_pred             ceeechhhcccCeEEecccCCCCC-----C---------cCCCeeEEEE----CC--c----------hHhCC-------
Confidence               0     257888888654211     0         1246999998    00  1          00111       


Q ss_pred             hhHHHHHHHHHHhcc-ceeccEEEehhhHHHHH
Q 014571          383 ECGMAQEEINALVVG-LRIQKVLVLTALIESFL  414 (422)
Q Consensus       383 ~l~~~Q~~IL~~a~~-lr~~~~~~~t~~~~~~~  414 (422)
                        .+.|+++++.+.. |+.+|.|++ .|.|++.
T Consensus       228 --~~~~~~vl~~~~~~L~pgG~L~l-g~sE~~~  257 (274)
T 1af7_A          228 --KTTQEDILRRFVPLLKPDGLLFA-GHSENFS  257 (274)
T ss_dssp             --HHHHHHHHHHHGGGEEEEEEEEE-CTTCCCT
T ss_pred             --HHHHHHHHHHHHHHhCCCcEEEE-Eeccccc
Confidence              1358899988865 899999987 4556553

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=97.71  E-value=9.7e-05  Score=72.89  Aligned_cols=70  Identities=20%  Similarity=0.207  Sum_probs=60.6

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhh
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK  323 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~  323 (422)
                      .+...++..++.+|||+|||+|..+..+++.. +..+++++|+ +..++.++++++..|+. +++++.+|...
T Consensus       174 ~l~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  244 (360)
T 1tw3_A          174 APAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFE  244 (360)
T ss_dssp             HHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTS
T ss_pred             HHHHhCCCccCcEEEEeCCcCcHHHHHHHHhC-CCCEEEEecC-HHHHHHHHHHHHhcCCCCceEEEeCCCCC
Confidence            34556677889999999999999999999885 4579999999 99999999999999885 79999999753

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=97.71  E-value=2e-05  Score=75.46  Aligned_cols=67  Identities=15%  Similarity=0.079  Sum_probs=54.0

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      .+.+|||++||+|..|..+++.   ..+|+|+|+|+.+++.+++      ..+|.+.++|+...+.              
T Consensus        39 ~~~~vLDvGcGtG~~~~~l~~~---~~~v~gvD~s~~ml~~a~~------~~~v~~~~~~~e~~~~--------------   95 (257)
T 4hg2_A           39 ARGDALDCGCGSGQASLGLAEF---FERVHAVDPGEAQIRQALR------HPRVTYAVAPAEDTGL--------------   95 (257)
T ss_dssp             CSSEEEEESCTTTTTHHHHHTT---CSEEEEEESCHHHHHTCCC------CTTEEEEECCTTCCCC--------------
T ss_pred             CCCCEEEEcCCCCHHHHHHHHh---CCEEEEEeCcHHhhhhhhh------cCCceeehhhhhhhcc--------------
Confidence            4579999999999999999987   3689999999999877653      3679999999876432              


Q ss_pred             CCCCCCCceee
Q 014571          341 KDNNYITSQTS  351 (422)
Q Consensus       341 ~~~~~FD~VLv  351 (422)
                       ..+.||.|++
T Consensus        96 -~~~sfD~v~~  105 (257)
T 4hg2_A           96 -PPASVDVAIA  105 (257)
T ss_dssp             -CSSCEEEEEE
T ss_pred             -cCCcccEEEE
Confidence             1356999986

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=97.71  E-value=0.00011  Score=70.12  Aligned_cols=59  Identities=19%  Similarity=0.032  Sum_probs=51.2

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      .++.+|||++||.|-.+..++    +..+++|+|+++.+++.+++++.+.| .+..+...|...
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~----~~~~y~a~DId~~~i~~ar~~~~~~g-~~~~~~v~D~~~  162 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER----GIASVWGCDIHQGLGDVITPFAREKD-WDFTFALQDVLC  162 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT----TCSEEEEEESBHHHHHHHHHHHHHTT-CEEEEEECCTTT
T ss_pred             CCCCeEEEecCCccHHHHHhc----cCCeEEEEeCCHHHHHHHHHHHHhcC-CCceEEEeeccc
Confidence            567899999999998877666    57899999999999999999999998 567888888754

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=97.70  E-value=4.9e-05  Score=68.77  Aligned_cols=66  Identities=15%  Similarity=-0.002  Sum_probs=52.7

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      ++.+|||++||+|..+..+     +..+|+++|+++.+++.+++++     .++.++++|....+.              
T Consensus        36 ~~~~vLdiG~G~G~~~~~l-----~~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~d~~~~~~--------------   91 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL-----PYPQKVGVEPSEAMLAVGRRRA-----PEATWVRAWGEALPF--------------   91 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC-----CCSEEEEECCCHHHHHHHHHHC-----TTSEEECCCTTSCCS--------------
T ss_pred             CCCeEEEECCCCCHhHHhC-----CCCeEEEEeCCHHHHHHHHHhC-----CCcEEEEcccccCCC--------------
Confidence            8899999999999988766     2238999999999999998875     568888888765421              


Q ss_pred             CCCCCCCceee
Q 014571          341 KDNNYITSQTS  351 (422)
Q Consensus       341 ~~~~~FD~VLv  351 (422)
                       ..+.||.|++
T Consensus        92 -~~~~fD~v~~  101 (211)
T 2gs9_A           92 -PGESFDVVLL  101 (211)
T ss_dssp             -CSSCEEEEEE
T ss_pred             -CCCcEEEEEE
Confidence             1356899986

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=97.70  E-value=9e-05  Score=68.71  Aligned_cols=64  Identities=19%  Similarity=0.188  Sum_probs=54.4

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR  326 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~  326 (422)
                      ..+.++.+|||++||+|..+..+++...   +|+++|+++.+++.+++++   ...++.++++|......
T Consensus        52 ~~~~~~~~vLD~GcG~G~~~~~la~~~~---~v~gvD~s~~~~~~a~~~~---~~~~~~~~~~d~~~~~~  115 (245)
T 3ggd_A           52 LLFNPELPLIDFACGNGTQTKFLSQFFP---RVIGLDVSKSALEIAAKEN---TAANISYRLLDGLVPEQ  115 (245)
T ss_dssp             TTSCTTSCEEEETCTTSHHHHHHHHHSS---CEEEEESCHHHHHHHHHHS---CCTTEEEEECCTTCHHH
T ss_pred             hccCCCCeEEEEcCCCCHHHHHHHHhCC---CEEEEECCHHHHHHHHHhC---cccCceEEECccccccc
Confidence            3467899999999999999999998742   8999999999999999876   34579999999887543

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=97.70  E-value=4.7e-05  Score=73.17  Aligned_cols=65  Identities=17%  Similarity=0.193  Sum_probs=48.2

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccC---CCcEE--EEEcCChHHHHHHHHHHHHh-CCcceEEE--ecchhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLR---DEGEV--VAVDRSHNKVMDIQKLAAEM-GLKCITTY--KLDALK  323 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~---~~g~V--~A~D~s~~rl~~l~~~l~r~-g~~nv~~~--~~Da~~  323 (422)
                      +.++.+|||++||+|..|..++..+.   +...|  +++|.|+.+++.++++++.. ++.++.+.  ..|+..
T Consensus        50 ~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~  122 (292)
T 2aot_A           50 TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSE  122 (292)
T ss_dssp             TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHH
T ss_pred             CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhh
Confidence            46788999999999988776554321   34544  99999999999999998764 66776554  445543

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=97.65  E-value=0.00037  Score=66.91  Aligned_cols=62  Identities=16%  Similarity=0.123  Sum_probs=49.5

Q ss_pred             CCCCeEEEecCCC---ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          260 QKGERILDMCAAP---GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       260 ~pg~~VLD~CAgp---GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      .+..+|||++||+   |..+..+++. .+.++|+++|.|+.+++.+++++..  ..++.++.+|.+..
T Consensus        76 ~~~~~vLDlGcG~pt~G~~~~~~~~~-~p~~~v~~vD~sp~~l~~Ar~~~~~--~~~v~~~~~D~~~~  140 (274)
T 2qe6_A           76 AGISQFLDLGSGLPTVQNTHEVAQSV-NPDARVVYVDIDPMVLTHGRALLAK--DPNTAVFTADVRDP  140 (274)
T ss_dssp             TCCCEEEEETCCSCCSSCHHHHHHHH-CTTCEEEEEESSHHHHHHHHHHHTT--CTTEEEEECCTTCH
T ss_pred             cCCCEEEEECCCCCCCChHHHHHHHh-CCCCEEEEEECChHHHHHHHHhcCC--CCCeEEEEeeCCCc
Confidence            3457999999999   9765544444 4568999999999999999998743  35799999998764

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.57  E-value=0.00014  Score=68.52  Aligned_cols=67  Identities=18%  Similarity=0.094  Sum_probs=53.1

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      ++.+|||++||+|..+..+++.   ..+|+++|+++.+++.++++..    .+  ++++|+...+.              
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~l~~a~~~~~----~~--~~~~d~~~~~~--------------  110 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREKGV----KN--VVEAKAEDLPF--------------  110 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHHTC----SC--EEECCTTSCCS--------------
T ss_pred             CCCeEEEeCCCcCHHHHHHHHc---CCeEEEEeCCHHHHHHHHhhcC----CC--EEECcHHHCCC--------------
Confidence            7889999999999999999886   3689999999999999988754    22  67777765321              


Q ss_pred             CCCCCCCceee
Q 014571          341 KDNNYITSQTS  351 (422)
Q Consensus       341 ~~~~~FD~VLv  351 (422)
                       ..+.||.|++
T Consensus       111 -~~~~fD~v~~  120 (260)
T 2avn_A          111 -PSGAFEAVLA  120 (260)
T ss_dssp             -CTTCEEEEEE
T ss_pred             -CCCCEEEEEE
Confidence             1356899886

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=97.56  E-value=4.4e-05  Score=72.39  Aligned_cols=49  Identities=12%  Similarity=0.174  Sum_probs=40.3

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE  308 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r  308 (422)
                      .+.+|.+|||++||+|..+..++..  +..+|+|+|+|+.+++.++++++.
T Consensus        52 ~~~~g~~vLDiGCG~G~~~~~~~~~--~~~~v~g~D~s~~~l~~a~~~~~~  100 (263)
T 2a14_A           52 GGLQGDTLIDIGSGPTIYQVLAACD--SFQDITLSDFTDRNREELEKWLKK  100 (263)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGG--TEEEEEEEESCHHHHHHHHHHHHT
T ss_pred             CCCCCceEEEeCCCccHHHHHHHHh--hhcceeeccccHHHHHHHHHHHhc
Confidence            4678999999999999877766554  224799999999999999988754

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=97.55  E-value=1.8e-05  Score=75.98  Aligned_cols=75  Identities=13%  Similarity=0.109  Sum_probs=51.6

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhc--cCC-CcEEEEEcC--ChHHHHHHHHHHHHhCCcceEEEec-chhhhhhccCCCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASL--LRD-EGEVVAVDR--SHNKVMDIQKLAAEMGLKCITTYKL-DALKAVRRKNESN  332 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l--~~~-~g~V~A~D~--s~~rl~~l~~~l~r~g~~nv~~~~~-Da~~~~~~~~~~~  332 (422)
                      .+||.+|+|++|||||-|...+++  ++. .|.|+|+|.  .+-..       ...|..-+.+.++ |.+...       
T Consensus        71 ikpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~-------~~~Gv~~i~~~~G~Df~~~~-------  136 (269)
T 2px2_A           71 VQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM-------QSYGWNIVTMKSGVDVFYKP-------  136 (269)
T ss_dssp             CCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC-------CSTTGGGEEEECSCCGGGSC-------
T ss_pred             CCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc-------cCCCceEEEeeccCCccCCC-------
Confidence            578999999999999999999887  533 578888883  21100       0034444566667 887521       


Q ss_pred             CCccccCCCCCCCCCceeecC-Cccc
Q 014571          333 DEPNMCNSKDNNYITSQTSDS-MKLH  357 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDa-PCSg  357 (422)
                                ...+|.||+|. |.||
T Consensus       137 ----------~~~~DvVLSDMAPnSG  152 (269)
T 2px2_A          137 ----------SEISDTLLCDIGESSP  152 (269)
T ss_dssp             ----------CCCCSEEEECCCCCCS
T ss_pred             ----------CCCCCEEEeCCCCCCC
Confidence                      23589999996 7433

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=97.50  E-value=0.00012  Score=66.29  Aligned_cols=58  Identities=12%  Similarity=0.098  Sum_probs=47.3

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      ..+. .++.+|||++||+|..+..+++.  + .+++++|+++..++.++++.       ..+..+|...
T Consensus        27 ~~~~-~~~~~vLdiG~G~G~~~~~l~~~--~-~~~~~~D~~~~~~~~~~~~~-------~~~~~~d~~~   84 (230)
T 3cc8_A           27 KHIK-KEWKEVLDIGCSSGALGAAIKEN--G-TRVSGIEAFPEAAEQAKEKL-------DHVVLGDIET   84 (230)
T ss_dssp             TTCC-TTCSEEEEETCTTSHHHHHHHTT--T-CEEEEEESSHHHHHHHHTTS-------SEEEESCTTT
T ss_pred             HHhc-cCCCcEEEeCCCCCHHHHHHHhc--C-CeEEEEeCCHHHHHHHHHhC-------CcEEEcchhh
Confidence            3444 78899999999999999999987  3 79999999999998888653       2567777764

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=97.49  E-value=0.00011  Score=70.49  Aligned_cols=72  Identities=8%  Similarity=-0.114  Sum_probs=59.2

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH----hCCcceEEEecchhhhhhccCCCCCCcc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE----MGLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r----~g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      .+.+|||++||.|+-+..++..  + ++|+++|+++..++.+++++..    +.-++++++.+|+..+.           
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~--~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~-----------  137 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY--D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI-----------  137 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS--S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC-----------
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC--C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH-----------
Confidence            4579999999999999999887  4 7999999999999999887643    22357999999987542           


Q ss_pred             ccCCCCCCCCCceeecC
Q 014571          337 MCNSKDNNYITSQTSDS  353 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDa  353 (422)
                             +.||.|++|+
T Consensus       138 -------~~fD~Ii~d~  147 (262)
T 2cmg_A          138 -------KKYDLIFCLQ  147 (262)
T ss_dssp             -------CCEEEEEESS
T ss_pred             -------hhCCEEEECC
Confidence                   3589999995

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=97.46  E-value=0.00014  Score=70.27  Aligned_cols=74  Identities=12%  Similarity=0.035  Sum_probs=60.4

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .+..+|||++||.|-.+..++... +..+++|+|+++.+++.+++|+.++|+. ..+...|.....              
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~-p~a~y~a~DId~~~le~a~~~l~~~g~~-~~~~v~D~~~~~--------------  194 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLP-AETVYIASDIDARLVGFVDEALTRLNVP-HRTNVADLLEDR--------------  194 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCC-TTCEEEEEESBHHHHHHHHHHHHHTTCC-EEEEECCTTTSC--------------
T ss_pred             CCCceeeeeccCccHHHHHHHhhC-CCCEEEEEeCCHHHHHHHHHHHHhcCCC-ceEEEeeecccC--------------
Confidence            346699999999999998888763 5789999999999999999999999987 677777754321              


Q ss_pred             CCCCCCCCceee
Q 014571          340 SKDNNYITSQTS  351 (422)
Q Consensus       340 ~~~~~~FD~VLv  351 (422)
                        ..+.||.||+
T Consensus       195 --p~~~~DvaL~  204 (281)
T 3lcv_B          195 --LDEPADVTLL  204 (281)
T ss_dssp             --CCSCCSEEEE
T ss_pred             --CCCCcchHHH
Confidence              2456898876

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=97.46  E-value=0.00027  Score=69.48  Aligned_cols=112  Identities=10%  Similarity=0.054  Sum_probs=81.6

Q ss_pred             HHhcCCCC-CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCC
Q 014571          254 AHALDPQK-GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNES  331 (422)
Q Consensus       254 ~~~L~p~p-g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~  331 (422)
                      ...++..+ +.+|||++||+|..+..+++... ..+++++|+ +..++.+++++.+.++. +++++.+|.......    
T Consensus       171 l~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~----  244 (352)
T 3mcz_A          171 VSELGVFARARTVIDLAGGHGTYLAQVLRRHP-QLTGQIWDL-PTTRDAARKTIHAHDLGGRVEFFEKNLLDARNF----  244 (352)
T ss_dssp             HHTCGGGTTCCEEEEETCTTCHHHHHHHHHCT-TCEEEEEEC-GGGHHHHHHHHHHTTCGGGEEEEECCTTCGGGG----
T ss_pred             HHhCCCcCCCCEEEEeCCCcCHHHHHHHHhCC-CCeEEEEEC-HHHHHHHHHHHHhcCCCCceEEEeCCcccCccc----
Confidence            34455556 88999999999999999998854 579999999 88999999999999885 599999998754310    


Q ss_pred             CCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                                ....||.|++    +  ..          .+.|...         ...++|+++.. ++.+|.+++
T Consensus       245 ----------~~~~~D~v~~----~--~v----------lh~~~~~---------~~~~~l~~~~~~L~pgG~l~i  285 (352)
T 3mcz_A          245 ----------EGGAADVVML----N--DC----------LHYFDAR---------EAREVIGHAAGLVKPGGALLI  285 (352)
T ss_dssp             ----------TTCCEEEEEE----E--SC----------GGGSCHH---------HHHHHHHHHHHTEEEEEEEEE
T ss_pred             ----------CCCCccEEEE----e--cc----------cccCCHH---------HHHHHHHHHHHHcCCCCEEEE
Confidence                      1234898887    1  11          1123221         23567777754 788888877

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=97.44  E-value=7.2e-05  Score=69.76  Aligned_cols=50  Identities=20%  Similarity=0.235  Sum_probs=42.0

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM  309 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~  309 (422)
                      ...+|.+|||++||+|..+..++...  ..+|+++|+++.+++.++++++..
T Consensus        53 ~~~~~~~vLDlGcG~G~~~~~l~~~~--~~~v~gvD~s~~~l~~a~~~~~~~  102 (265)
T 2i62_A           53 GAVKGELLIDIGSGPTIYQLLSACES--FTEIIVSDYTDQNLWELQKWLKKE  102 (265)
T ss_dssp             SSCCEEEEEEESCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHTTC
T ss_pred             cccCCCEEEEECCCccHHHHHHhhcc--cCeEEEecCCHHHHHHHHHHHhcC
Confidence            34678999999999999988887652  258999999999999999887654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=97.41  E-value=0.00023  Score=69.49  Aligned_cols=67  Identities=18%  Similarity=0.148  Sum_probs=56.7

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhh
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK  323 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~  323 (422)
                      ...++..+ .+|||+|||+|..+..+++.. +..+++++|+ +..++.+++++.+.|+ .+|+++.+|...
T Consensus       161 ~~~~~~~~-~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  228 (334)
T 2ip2_A          161 PRLLDFRG-RSFVDVGGGSGELTKAILQAE-PSARGVMLDR-EGSLGVARDNLSSLLAGERVSLVGGDMLQ  228 (334)
T ss_dssp             HHHSCCTT-CEEEEETCTTCHHHHHHHHHC-TTCEEEEEEC-TTCTHHHHHHTHHHHHTTSEEEEESCTTT
T ss_pred             HHhCCCCC-CEEEEeCCCchHHHHHHHHHC-CCCEEEEeCc-HHHHHHHHHHHhhcCCCCcEEEecCCCCC
Confidence            34445556 899999999999999999886 4579999999 9999999999988876 569999998764

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.37  E-value=0.00079  Score=62.38  Aligned_cols=60  Identities=20%  Similarity=0.158  Sum_probs=50.5

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC---cceEEEecchhh
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL---KCITTYKLDALK  323 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~---~nv~~~~~Da~~  323 (422)
                      ++..+||++++  |.-|+.+|++ . .|+|+++|.++...+.+++++++.|+   ++|+++.+|+..
T Consensus        29 ~~a~~VLEiGt--GySTl~lA~~-~-~g~VvtvE~d~~~~~~ar~~l~~~g~~~~~~I~~~~gda~~   91 (202)
T 3cvo_A           29 EEAEVILEYGS--GGSTVVAAEL-P-GKHVTSVESDRAWARMMKAWLAANPPAEGTEVNIVWTDIGP   91 (202)
T ss_dssp             HHCSEEEEESC--SHHHHHHHTS-T-TCEEEEEESCHHHHHHHHHHHHHSCCCTTCEEEEEECCCSS
T ss_pred             hCCCEEEEECc--hHHHHHHHHc-C-CCEEEEEeCCHHHHHHHHHHHHHcCCCCCCceEEEEeCchh
Confidence            46789999997  6666667764 3 68999999999999999999999995   579999999754

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=97.33  E-value=0.00015  Score=70.40  Aligned_cols=65  Identities=22%  Similarity=0.106  Sum_probs=54.9

Q ss_pred             CCCeEEEecCCC--ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          261 KGERILDMCAAP--GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       261 pg~~VLD~CAgp--GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      ...+|||++||+  ++.+..+++...+.++|+++|.|+.+++.+++++...+..++.++++|.+.+.
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~~~~~~~~~v~aD~~~~~  144 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLASTPEGRTAYVEADMLDPA  144 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCCCSSSEEEEEECCTTCHH
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhccCCCCcEEEEEecccChh
Confidence            347899999997  67788888877778999999999999999999876554457999999998763

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.30  E-value=0.00019  Score=78.75  Aligned_cols=85  Identities=12%  Similarity=-0.035  Sum_probs=61.7

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccC--CCcEEEEEcCChHHHHHH--HHHHHH----hCCcceEEEecchhhhhhccCCC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLR--DEGEVVAVDRSHNKVMDI--QKLAAE----MGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~--~~g~V~A~D~s~~rl~~l--~~~l~r----~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      .++.+|||.|||+|+....+++.++  +...++|+|+++..++.+  +.++..    .|..+..+...|......     
T Consensus       320 ~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~LlhGi~~~~I~~dD~L~~~~-----  394 (878)
T 3s1s_A          320 TEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVSSNNAPTITGEDVCSLNP-----  394 (878)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCBTTBCCEEECCCGGGCCG-----
T ss_pred             CCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhcCCCcceEEecchhcccc-----
Confidence            4689999999999999999998764  246899999999999888  555443    344444555555543210     


Q ss_pred             CCCccccCCCCCCCCCceeecCCcccc
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                               .....||.|+.+||-.+.
T Consensus       395 ---------~~~~kFDVVIgNPPYg~~  412 (878)
T 3s1s_A          395 ---------EDFANVSVVVMNPPYVSG  412 (878)
T ss_dssp             ---------GGGTTEEEEEECCBCCSS
T ss_pred             ---------cccCCCCEEEECCCcccc
Confidence                     113569999999999764

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=97.27  E-value=0.00055  Score=68.06  Aligned_cols=62  Identities=23%  Similarity=0.214  Sum_probs=54.7

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhh
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK  323 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~  323 (422)
                      ..+.+|||++||+|..+..+++.. +..+++++|+ +..++.++++++..|+ .+|+++.+|...
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~~v~~~~~d~~~  240 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYN-KEVEVTIVDL-PQQLEMMRKQTAGLSGSERIHGHGANLLD  240 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHS-TTCEEEEEEC-HHHHHHHHHHHTTCTTGGGEEEEECCCCS
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeC-HHHHHHHHHHHHhcCcccceEEEEccccc
Confidence            466899999999999999999885 4579999999 9999999999998887 579999999764

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=97.25  E-value=0.00014  Score=75.66  Aligned_cols=72  Identities=24%  Similarity=0.241  Sum_probs=53.6

Q ss_pred             cccCHHHHHHHHHHhchh-hHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCcc
Q 014571           13 LRWNPQVEEYFIRAYGAD-HFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTI   91 (422)
Q Consensus        13 ~~~~~~v~~~l~~~~~~~-~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~   91 (422)
                      .++++.+.+++++.||.+ .++++++++.+||.. ++||||+|++++++++.|.+.         |             +
T Consensus         6 ~~~P~~~~~~~~~~~g~~~~~~~~~~a~~~~~p~-~lRvN~lk~~~~~~~~~L~~~---------g-------------~   62 (479)
T 2frx_A            6 VYFPDAFLTQMREAMPSTLSFDDFLAACQRPLRR-SIRVNTLKISVADFLQLTAPY---------G-------------W   62 (479)
T ss_dssp             -CCCHHHHHHHGGGCC----CHHHHHHHTSCCCC-CEEECTTTCCHHHHHHHHGGG---------C-------------C
T ss_pred             ccCcHHHHHHHHHHcCccHHHHHHHHhcCCCCCE-EEEEeCCCCCHHHHHHHHHHc---------C-------------C
Confidence            457888999999999976 579999999998875 599999999999998887643         3             3


Q ss_pred             ccccCCCCCcEEEEeC
Q 014571           92 SESQIPGLEYVVFVKG  107 (422)
Q Consensus        92 ~~~~~~~l~~~l~~~~  107 (422)
                      ...+.|+.++.+++..
T Consensus        63 ~~~~~~~~~~~~~~~~   78 (479)
T 2frx_A           63 TLTPIPWCEEGFWIER   78 (479)
T ss_dssp             CCCEETTEEEEEC---
T ss_pred             ceeecCCCCceEEEec
Confidence            3456777888887753

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=97.20  E-value=8.8e-05  Score=72.17  Aligned_cols=81  Identities=7%  Similarity=-0.106  Sum_probs=65.1

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      .+..+||++||+|..+..+.+   +..+++.+|.++.-++.+++|++.  ..++++++.|+.........+         
T Consensus        91 n~~~~LDlfaGSGaLgiEaLS---~~d~~vfvE~~~~a~~~L~~Nl~~--~~~~~V~~~D~~~~L~~l~~~---------  156 (283)
T 2oo3_A           91 NLNSTLSYYPGSPYFAINQLR---SQDRLYLCELHPTEYNFLLKLPHF--NKKVYVNHTDGVSKLNALLPP---------  156 (283)
T ss_dssp             SSSSSCCEEECHHHHHHHHSC---TTSEEEEECCSHHHHHHHTTSCCT--TSCEEEECSCHHHHHHHHCSC---------
T ss_pred             cCCCceeEeCCcHHHHHHHcC---CCCeEEEEeCCHHHHHHHHHHhCc--CCcEEEEeCcHHHHHHHhcCC---------
Confidence            356789999999999888776   247999999999999999999976  367999999987765432211         


Q ss_pred             CCCCCCCceeecCCccc
Q 014571          341 KDNNYITSQTSDSMKLH  357 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCSg  357 (422)
                        ..+||.|++|||---
T Consensus       157 --~~~fdLVfiDPPYe~  171 (283)
T 2oo3_A          157 --PEKRGLIFIDPSYER  171 (283)
T ss_dssp             --TTSCEEEEECCCCCS
T ss_pred             --CCCccEEEECCCCCC
Confidence              245999999999974

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=97.20  E-value=0.00054  Score=66.93  Aligned_cols=79  Identities=15%  Similarity=0.064  Sum_probs=52.7

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEE-ecchhhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY-KLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~-~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      +|.+|||++||+|+.|..+++.  +.++|+|+|+++.+++...++     -..+... ..|.+......  .+       
T Consensus        85 ~g~~vLDiGcGTG~~t~~L~~~--ga~~V~aVDvs~~mL~~a~r~-----~~rv~~~~~~ni~~l~~~~--l~-------  148 (291)
T 3hp7_A           85 EDMITIDIGASTGGFTDVMLQN--GAKLVYAVDVGTNQLVWKLRQ-----DDRVRSMEQYNFRYAEPVD--FT-------  148 (291)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSSSCSCHHHHT-----CTTEEEECSCCGGGCCGGG--CT-------
T ss_pred             cccEEEecCCCccHHHHHHHhC--CCCEEEEEECCHHHHHHHHHh-----CcccceecccCceecchhh--CC-------
Confidence            6789999999999999999886  357999999999999873321     1223222 23444332110  00       


Q ss_pred             CCCCCCCCceeecCCcccc
Q 014571          340 SKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~  358 (422)
                         ...||.|.+|......
T Consensus       149 ---~~~fD~v~~d~sf~sl  164 (291)
T 3hp7_A          149 ---EGLPSFASIDVSFISL  164 (291)
T ss_dssp             ---TCCCSEEEECCSSSCG
T ss_pred             ---CCCCCEEEEEeeHhhH
Confidence               1248999999876653

>2p38_A Protein involved in ribosomal biogenesis; two alpha/beta domains, PUA domain, biosynthetic protein; 1.80A {Pyrococcus abyssi}

Probab=97.13  E-value=0.00057  Score=61.45  Aligned_cols=62  Identities=19%  Similarity=0.104  Sum_probs=54.0

Q ss_pred             CCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEE
Q 014571          123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI  202 (422)
Q Consensus       123 ~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~V  202 (422)
                      ...|+||.++...++.|+||+.|||...+  ++.||.|.|+                                +.++.++
T Consensus        95 k~kV~V~~~ae~~flyG~dV~k~gI~~~~--~~~~~~VvV~--------------------------------~~~~~pL  140 (166)
T 2p38_A           95 KNYVILGPKASFLFTTGKDAPKEAVREIK--WQGSKRVVVL--------------------------------NDLGDII  140 (166)
T ss_dssp             SSEEEECHHHHHHHHTTCCBCGGGEEEEE--CSSCSEEEEE--------------------------------CTTSCEE
T ss_pred             ccEEEECCcceEeeecCCCcchhcceEEe--ecCCCEEEEE--------------------------------ECCCcEE
Confidence            45899999999999999999999999999  9999999999                                3378899


Q ss_pred             EEccCccCHHHHhcccCcceeec
Q 014571          203 GQGTAMMSRAGIFRASEGIAVDM  225 (422)
Q Consensus       203 rvg~a~msreel~~~~~GiaV~~  225 (422)
                      |+|.+.+|       ++|.++..
T Consensus       141 G~G~a~~s-------~~gkvv~n  156 (166)
T 2p38_A          141 GIGLINPK-------SDRRFIKN  156 (166)
T ss_dssp             EEEEECTT-------CSTTSEEE
T ss_pred             EEEEEEEC-------CCCEEEEE
Confidence            99999876       66766653

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=97.09  E-value=0.0011  Score=66.91  Aligned_cols=84  Identities=11%  Similarity=-0.051  Sum_probs=60.6

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD  342 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~  342 (422)
                      .+|+|+|||.||.+..+.+.  +--.|+|+|+++..++..+.|.     .+..+++.|.+++....... .      ...
T Consensus         3 ~~vidLFsG~GGlslG~~~a--G~~~v~avE~d~~a~~t~~~N~-----~~~~~~~~DI~~~~~~~~~~-~------~~~   68 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARA--GFDVKMAVEIDQHAINTHAINF-----PRSLHVQEDVSLLNAEIIKG-F------FKN   68 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHH--TCEEEEEECSCHHHHHHHHHHC-----TTSEEECCCGGGCCHHHHHH-H------HCS
T ss_pred             CeEEEEccCcCHHHHHHHHC--CCcEEEEEeCCHHHHHHHHHhC-----CCCceEecChhhcCHHHHHh-h------ccc
Confidence            47999999999999988776  2345789999999999998873     45677888888753211000 0      001


Q ss_pred             CCCCCceeecCCccccCc
Q 014571          343 NNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       343 ~~~FD~VLvDaPCSg~G~  360 (422)
                      ...+|.|+.++||.+-..
T Consensus        69 ~~~~D~i~ggpPCQ~fS~   86 (376)
T 3g7u_A           69 DMPIDGIIGGPPCQGFSS   86 (376)
T ss_dssp             CCCCCEEEECCCCCTTC-
T ss_pred             CCCeeEEEecCCCCCccc
Confidence            245899999999998665

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=97.09  E-value=0.00053  Score=62.63  Aligned_cols=62  Identities=11%  Similarity=-0.001  Sum_probs=49.7

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCC
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSK  341 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~  341 (422)
                      +.+|||++||+|..+..++..       +++|.++.+++.++++       ++.++.+|....+.               
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~-------~~vD~s~~~~~~a~~~-------~~~~~~~d~~~~~~---------------   98 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK-------IGVEPSERMAEIARKR-------GVFVLKGTAENLPL---------------   98 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC-------EEEESCHHHHHHHHHT-------TCEEEECBTTBCCS---------------
T ss_pred             CCcEEEeCCCCCHHHHHHHHH-------hccCCCHHHHHHHHhc-------CCEEEEcccccCCC---------------
Confidence            889999999999999887653       9999999999998886       57888888765321               


Q ss_pred             CCCCCCceeec
Q 014571          342 DNNYITSQTSD  352 (422)
Q Consensus       342 ~~~~FD~VLvD  352 (422)
                      ..+.||.|++.
T Consensus        99 ~~~~fD~v~~~  109 (219)
T 1vlm_A           99 KDESFDFALMV  109 (219)
T ss_dssp             CTTCEEEEEEE
T ss_pred             CCCCeeEEEEc
Confidence            13468999873

>3u28_A H/ACA ribonucleoprotein complex subunit 4; pseudouridine synthase, pseudouridylation, H/ACA RNA; 1.90A {Saccharomyces cerevisiae} PDB: 3uai_A

Probab=97.09  E-value=0.00068  Score=68.74  Aligned_cols=74  Identities=22%  Similarity=0.351  Sum_probs=66.7

Q ss_pred             CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571          122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY  201 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~  201 (422)
                      +.+.|+|+...++++.+|+.+++||++..+.+++.||.|.++                                ...+.+
T Consensus       265 ~lp~V~L~deaa~~V~NGq~L~~pgVl~~~~~i~~gd~VvVv--------------------------------t~kGel  312 (400)
T 3u28_A          265 GYKRIVVKDSAVNAVCYGAKLMIPGLLRYEEGIELYDEIVLI--------------------------------TTKGEA  312 (400)
T ss_dssp             TSCEEEECHHHHHHHHHHSEEEGGGEEEECTTCCTTCEEEEE--------------------------------CTTCCE
T ss_pred             hCCccccCHHHHHHHHCcCccccCccccccccCCCCCEEEEE--------------------------------eCCCcE
Confidence            567889999999999999999999999998889999999998                                346789


Q ss_pred             EEEccCccCHHHHhcccCcceeeccc
Q 014571          202 IGQGTAMMSRAGIFRASEGIAVDMHN  227 (422)
Q Consensus       202 Vrvg~a~msreel~~~~~GiaV~~~~  227 (422)
                      |++|++.|+.+++...++|++++...
T Consensus       313 LAIG~A~mss~em~~~~~G~vvk~~r  338 (400)
T 3u28_A          313 IAVAIAQMSTVDLASCDHGVVASVKR  338 (400)
T ss_dssp             EEEEEESSCHHHHHHCSSSEEEEEEE
T ss_pred             EEEEEEEeCHHHHhhcCCcEEEEEEE
Confidence            99999999999999999999988653

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=97.06  E-value=0.0014  Score=62.68  Aligned_cols=85  Identities=11%  Similarity=0.081  Sum_probs=58.4

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhcc------CC-----CcEEEEEcCCh---HHHH-----------HHHHHHHH-----
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLL------RD-----EGEVVAVDRSH---NKVM-----------DIQKLAAE-----  308 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~------~~-----~g~V~A~D~s~---~rl~-----------~l~~~l~r-----  308 (422)
                      .+++.+|||+|.|.|--++.+++..      .+     ..+++++|..+   ..+.           .++++++.     
T Consensus        58 ~~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~  137 (257)
T 2qy6_A           58 PHPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPL  137 (257)
T ss_dssp             SSSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSC
T ss_pred             CCCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhccccc
Confidence            4567899999999999998887754      34     36899999887   4444           34455544     


Q ss_pred             -------h--CCcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecC
Q 014571          309 -------M--GLKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       309 -------~--g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDa  353 (422)
                             +  |..+++++.+|++.......   .       .....||.|++|+
T Consensus       138 ~g~~r~~~~~~~~~l~l~~GDa~~~l~~~~---~-------~~~~~~D~iflD~  181 (257)
T 2qy6_A          138 PGCHRLLLDEGRVTLDLWFGDINELISQLD---D-------SLNQKVDAWFLDG  181 (257)
T ss_dssp             SEEEEEEEC--CEEEEEEESCHHHHGGGSC---G-------GGTTCEEEEEECS
T ss_pred             cchhheeccCCceEEEEEECcHHHHHhhcc---c-------ccCCeEEEEEECC
Confidence                   1  23468899999998643221   0       0013699999996

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.05  E-value=0.00017  Score=70.48  Aligned_cols=37  Identities=19%  Similarity=0.122  Sum_probs=31.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCCh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH  296 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~  296 (422)
                      .++|.+|||+||||||.|-.+++.+ +...|+++|+..
T Consensus        79 ~~~g~~vlDLGaaPGgWsqva~~~~-gv~sV~Gvdlg~  115 (300)
T 3eld_A           79 LRITGRVLDLGCGRGGWSYYAAAQK-EVMSVKGYTLGI  115 (300)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHhc-CCceeeeEEecc
Confidence            3589999999999999999999875 345789999875

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=97.03  E-value=0.0014  Score=65.07  Aligned_cols=110  Identities=10%  Similarity=-0.046  Sum_probs=77.8

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      ++..++..+..+|+|++||+|..+..+++.. +..+++..|. +..++.+++++...+.++|+++.+|..+.+       
T Consensus       171 ~~~~~~~~~~~~v~DvGgG~G~~~~~l~~~~-p~~~~~~~dl-p~v~~~a~~~~~~~~~~rv~~~~gD~~~~~-------  241 (353)
T 4a6d_A          171 VLTAFDLSVFPLMCDLGGGAGALAKECMSLY-PGCKITVFDI-PEVVWTAKQHFSFQEEEQIDFQEGDFFKDP-------  241 (353)
T ss_dssp             HHHSSCGGGCSEEEEETCTTSHHHHHHHHHC-SSCEEEEEEC-HHHHHHHHHHSCC--CCSEEEEESCTTTSC-------
T ss_pred             HHHhcCcccCCeEEeeCCCCCHHHHHHHHhC-CCceeEeccC-HHHHHHHHHhhhhcccCceeeecCccccCC-------
Confidence            4445566778899999999999999999986 4578888997 788898888877666788999999975421       


Q ss_pred             CCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                                ...+|.|++     .           .+.+.|....         -.+||+++.. ++.+|.+++
T Consensus       242 ----------~~~~D~~~~-----~-----------~vlh~~~d~~---------~~~iL~~~~~al~pgg~lli  281 (353)
T 4a6d_A          242 ----------LPEADLYIL-----A-----------RVLHDWADGK---------CSHLLERIYHTCKPGGGILV  281 (353)
T ss_dssp             ----------CCCCSEEEE-----E-----------SSGGGSCHHH---------HHHHHHHHHHHCCTTCEEEE
T ss_pred             ----------CCCceEEEe-----e-----------eecccCCHHH---------HHHHHHHHHhhCCCCCEEEE
Confidence                      112477765     1           1123465431         2467887754 888887776

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=97.00  E-value=0.00072  Score=67.25  Aligned_cols=81  Identities=11%  Similarity=-0.062  Sum_probs=55.3

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD  342 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~  342 (422)
                      .+|+|++||.||.+..+.+.-.+-..|+|+|+++..++..+.|..     +..++.+|.+++....-            .
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~~-----~~~~~~~Di~~~~~~~~------------~   65 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNFP-----HTQLLAKTIEGITLEEF------------D   65 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECSCGGGCCHHHH------------H
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhcc-----ccccccCCHHHccHhHc------------C
Confidence            479999999999999988761111379999999999999999853     34467788876532110            0


Q ss_pred             CCCCCceeecCCccccCc
Q 014571          343 NNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       343 ~~~FD~VLvDaPCSg~G~  360 (422)
                      ...+|.|+.++||.+-..
T Consensus        66 ~~~~D~l~~gpPCq~fS~   83 (343)
T 1g55_A           66 RLSFDMILMSPPCQPFTR   83 (343)
T ss_dssp             HHCCSEEEECCC------
T ss_pred             cCCcCEEEEcCCCcchhh
Confidence            114899999999988655

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=96.97  E-value=0.00055  Score=69.00  Aligned_cols=50  Identities=8%  Similarity=-0.034  Sum_probs=42.7

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL  305 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~  305 (422)
                      +...+.+.++.+|||++||+|..+..+++.   ..+|+++|+|+.+++.++++
T Consensus        99 l~~~~~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~gvD~s~~~~~~a~~~  148 (416)
T 4e2x_A           99 FLATELTGPDPFIVEIGCNDGIMLRTIQEA---GVRHLGFEPSSGVAAKAREK  148 (416)
T ss_dssp             HHHTTTCSSSCEEEEETCTTTTTHHHHHHT---TCEEEEECCCHHHHHHHHTT
T ss_pred             HHHHhCCCCCCEEEEecCCCCHHHHHHHHc---CCcEEEECCCHHHHHHHHHc
Confidence            344566788999999999999999999986   35999999999999888765

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=96.93  E-value=0.0002  Score=68.01  Aligned_cols=84  Identities=13%  Similarity=0.067  Sum_probs=59.9

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec-chhhhhhccCCCCCCcc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL-DALKAVRRKNESNDEPN  336 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~-Da~~~~~~~~~~~~~~~  336 (422)
                      .++||.+|+|++|||||.|-..+.+.+ ..+|+|+|+-...-+. -...+.+|...|++..+ |.....           
T Consensus        75 ~l~~g~~VvDLGaapGGWSq~~a~~~g-~~~V~avdvG~~ghe~-P~~~~s~gwn~v~fk~gvDv~~~~-----------  141 (267)
T 3p8z_A           75 MVIPEGRVIDLGCGRGGWSYYCAGLKK-VTEVRGYTKGGPGHEE-PVPMSTYGWNIVKLMSGKDVFYLP-----------  141 (267)
T ss_dssp             SSCCCEEEEEESCTTSHHHHHHHTSTT-EEEEEEECCCSTTSCC-CCCCCCTTTTSEEEECSCCGGGCC-----------
T ss_pred             CCCCCCEEEEcCCCCCcHHHHHHHhcC-CCEEEEEecCCCCccC-cchhhhcCcCceEEEeccceeecC-----------
Confidence            367999999999999999987877754 4589999987653310 01124578888999988 864332           


Q ss_pred             ccCCCCCCCCCceeec-CCccccCc
Q 014571          337 MCNSKDNNYITSQTSD-SMKLHKEV  360 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvD-aPCSg~G~  360 (422)
                            ...+|.|||| +|.|+.-.
T Consensus       142 ------~~~~DtllcDIgeSs~~~~  160 (267)
T 3p8z_A          142 ------PEKCDTLLCDIGESSPSPT  160 (267)
T ss_dssp             ------CCCCSEEEECCCCCCSCHH
T ss_pred             ------CccccEEEEecCCCCCChh
Confidence                  2448999999 47666533

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=96.88  E-value=0.0023  Score=61.95  Aligned_cols=60  Identities=17%  Similarity=-0.003  Sum_probs=45.4

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchh
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDAL  322 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~  322 (422)
                      .+|+.|||.+||+|.-+..++.+   ..+++++|+++..++.+++++++..-..-....+|++
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~---g~~~~g~e~~~~~~~~a~~r~~~~~~~~~~~~~~~~~  293 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARW---GRRALGVELVPRYAQLAKERFAREVPGFSLEVLDGAT  293 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHHSTTCCEEEECC--
T ss_pred             CCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHHhccccchhhCCccc
Confidence            68999999999999877666654   3589999999999999999998864332233344544

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=96.84  E-value=0.00027  Score=68.52  Aligned_cols=38  Identities=21%  Similarity=0.203  Sum_probs=31.9

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChH
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHN  297 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~  297 (422)
                      ++++.+|||+||||||.+-.+++.+ +...|+++|+...
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~-gv~sV~GvdvG~d  125 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLK-NVKKVMAFTLGVQ  125 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCCT
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhc-CCCeeeeEEeccC
Confidence            5789999999999999998888765 3568899999764

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=96.84  E-value=0.0023  Score=63.30  Aligned_cols=76  Identities=14%  Similarity=0.007  Sum_probs=58.4

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCC
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSK  341 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~  341 (422)
                      +-+|+|+|||.||.+..+.+.  +--.|+|+|+++..++..+.|.....       .+|.+++....             
T Consensus        11 ~~~~~dLFaG~Gg~~~g~~~a--G~~~v~~~e~d~~a~~t~~~N~~~~~-------~~Di~~~~~~~-------------   68 (327)
T 2c7p_A           11 GLRFIDLFAGLGGFRLALESC--GAECVYSNEWDKYAQEVYEMNFGEKP-------EGDITQVNEKT-------------   68 (327)
T ss_dssp             TCEEEEETCTTTHHHHHHHHT--TCEEEEEECCCHHHHHHHHHHHSCCC-------BSCGGGSCGGG-------------
T ss_pred             CCcEEEECCCcCHHHHHHHHC--CCeEEEEEeCCHHHHHHHHHHcCCCC-------cCCHHHcCHhh-------------
Confidence            568999999999999988775  23578999999999999999864321       57777653211             


Q ss_pred             CCCCCCceeecCCccccCc
Q 014571          342 DNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       342 ~~~~FD~VLvDaPCSg~G~  360 (422)
                       ...+|.|+.++||.+-..
T Consensus        69 -~~~~D~l~~gpPCQ~fS~   86 (327)
T 2c7p_A           69 -IPDHDILCAGFPCQAFSI   86 (327)
T ss_dssp             -SCCCSEEEEECCCTTTCT
T ss_pred             -CCCCCEEEECCCCCCcch
Confidence             124899999999998655

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=96.83  E-value=0.001  Score=68.93  Aligned_cols=67  Identities=21%  Similarity=0.140  Sum_probs=53.7

Q ss_pred             cCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccccc
Q 014571           15 WNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISES   94 (422)
Q Consensus        15 ~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   94 (422)
                      +++.+.+.+++.||. .++++++++..|+...+|||||+|+|++++++.|.                         ....
T Consensus         2 lP~w~~~~~~~~~g~-e~~~~l~a~~~~~~~~~lRvN~lk~~~~~~~~~l~-------------------------~~~~   55 (464)
T 3m6w_A            2 LPKAFLSRMAELLGE-EFPAFLKALTEGKRTYGLRVNTLKLPPEAFQRISP-------------------------WPLR   55 (464)
T ss_dssp             CCHHHHHHHHHHHGG-GHHHHHHHHHTSCCCCEEEECTTTCCHHHHHHHCS-------------------------SCCE
T ss_pred             CcHHHHHHHHHHHHH-HHHHHHHHcCCCCCCeEEEEcCCCCCHHHHHHHcC-------------------------CCce
Confidence            456788899999995 59999999999956789999999999999977651                         2234


Q ss_pred             cCCCCCcEEEEeC
Q 014571           95 QIPGLEYVVFVKG  107 (422)
Q Consensus        95 ~~~~l~~~l~~~~  107 (422)
                      +.|+.++.++++.
T Consensus        56 ~~~~~~~g~~l~~   68 (464)
T 3m6w_A           56 PIPWCQEGFYYPE   68 (464)
T ss_dssp             EETTEEEEEECCT
T ss_pred             ecCCCCceEEECC
Confidence            5777888888764

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=96.76  E-value=0.00035  Score=67.65  Aligned_cols=38  Identities=16%  Similarity=0.134  Sum_probs=30.3

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCCh
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH  296 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~  296 (422)
                      ..+++.+|||+||||||.|..+++.. +.+.|.++|+..
T Consensus        71 ~l~~~~~VLDLGaAPGGWSQvAa~~~-~~~~v~g~dVGv  108 (277)
T 3evf_A           71 YVKLEGRVIDLGCGRGGWCYYAAAQK-EVSGVKGFTLGR  108 (277)
T ss_dssp             SSCCCEEEEEETCTTCHHHHHHHTST-TEEEEEEECCCC
T ss_pred             CCCCCCEEEEecCCCCHHHHHHHHhc-CCCcceeEEEec
Confidence            35788999999999999998888764 345777888773

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.74  E-value=0.00093  Score=62.68  Aligned_cols=43  Identities=23%  Similarity=0.258  Sum_probs=37.2

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHH
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKL  305 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~  305 (422)
                      +|.+|||++||+|+.|..+++.  +..+|+|+|+++.+++.++++
T Consensus        37 ~g~~VLDiGcGtG~~t~~la~~--g~~~V~gvDis~~ml~~a~~~   79 (232)
T 3opn_A           37 NGKTCLDIGSSTGGFTDVMLQN--GAKLVYALDVGTNQLAWKIRS   79 (232)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT--TCSEEEEECSSCCCCCHHHHT
T ss_pred             CCCEEEEEccCCCHHHHHHHhc--CCCEEEEEcCCHHHHHHHHHh
Confidence            5779999999999999999987  235999999999999876654

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=96.68  E-value=0.0009  Score=60.61  Aligned_cols=65  Identities=8%  Similarity=-0.021  Sum_probs=47.4

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      .+...+....++.+|||++||+|..+..++      .+|+++|+++.               ++.+..+|....+.    
T Consensus        57 ~~~~~l~~~~~~~~vLDiG~G~G~~~~~l~------~~v~~~D~s~~---------------~~~~~~~d~~~~~~----  111 (215)
T 2zfu_A           57 RIARDLRQRPASLVVADFGCGDCRLASSIR------NPVHCFDLASL---------------DPRVTVCDMAQVPL----  111 (215)
T ss_dssp             HHHHHHHTSCTTSCEEEETCTTCHHHHHCC------SCEEEEESSCS---------------STTEEESCTTSCSC----
T ss_pred             HHHHHHhccCCCCeEEEECCcCCHHHHHhh------ccEEEEeCCCC---------------CceEEEeccccCCC----
Confidence            344444445688999999999999877663      57999999987               46677788765321    


Q ss_pred             CCCCccccCCCCCCCCCceee
Q 014571          331 SNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLv  351 (422)
                                 ..+.||.|++
T Consensus       112 -----------~~~~fD~v~~  121 (215)
T 2zfu_A          112 -----------EDESVDVAVF  121 (215)
T ss_dssp             -----------CTTCEEEEEE
T ss_pred             -----------CCCCEeEEEE
Confidence                       1356899986

>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A

Probab=96.60  E-value=0.0026  Score=64.00  Aligned_cols=63  Identities=22%  Similarity=0.476  Sum_probs=56.5

Q ss_pred             CCCEEEEccccHHHHH-cCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCce
Q 014571          122 PPKEVIVSRKCAEAVL-RGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGL  200 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVl-rGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v  200 (422)
                      ....|+||.+|++|+. +|+.+.++||++.+..|+.||.|.+.                                .+.+.
T Consensus       274 ~~G~v~vD~gA~~al~~~g~sLl~~Gi~~v~g~F~~gd~V~i~--------------------------------~~~g~  321 (367)
T 2j5v_A          274 PAGEITVDEGATAAILERGSSLLPKGIKSVTGNFSRGEVIRIC--------------------------------NLEGR  321 (367)
T ss_dssp             CSCEEEECHHHHHHHHHHCCCBCGGGEEEEESCCCTTCEEEEE--------------------------------ETTCC
T ss_pred             CCCEEEECcCHHHHHHhCCCccCCcccEEEECcccCCCEEEEE--------------------------------CCCCC
Confidence            4468999999999998 79999999999999999999999999                                33577


Q ss_pred             EEEEccCccCHHHHhc
Q 014571          201 YIGQGTAMMSRAGIFR  216 (422)
Q Consensus       201 ~Vrvg~a~msreel~~  216 (422)
                      .|+.|.+..+.+|+.+
T Consensus       322 ~ia~G~~~y~s~e~~~  337 (367)
T 2j5v_A          322 DIAHGVSRYNSDALRR  337 (367)
T ss_dssp             EEEEEECSSCHHHHHH
T ss_pred             EEEEEEecCCHHHHHH
Confidence            8999999999999864

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.48  E-value=0.0044  Score=60.17  Aligned_cols=81  Identities=10%  Similarity=0.070  Sum_probs=63.8

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccC----CCcEEEEEcCCh--------------------------HHHHHHHHHHHHh
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLR----DEGEVVAVDRSH--------------------------NKVMDIQKLAAEM  309 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~----~~g~V~A~D~s~--------------------------~rl~~l~~~l~r~  309 (422)
                      .....||+++.+.|+-+..+|+.+.    +.++|+++|...                          .+++.+++++++.
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            3345999999999999999988764    368999999642                          1577899999999


Q ss_pred             CC--cceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecC
Q 014571          310 GL--KCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       310 g~--~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDa  353 (422)
                      |+  ++|+++.+|+.......             ..+.||.|.+|+
T Consensus       185 gl~~~~I~li~Gda~etL~~~-------------~~~~~d~vfIDa  217 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTA-------------PIDTLAVLRMDG  217 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTC-------------CCCCEEEEEECC
T ss_pred             CCCcCceEEEEeCHHHHHhhC-------------CCCCEEEEEEcC
Confidence            98  68999999997654221             135689999997

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=96.38  E-value=0.0084  Score=60.92  Aligned_cols=63  Identities=14%  Similarity=0.141  Sum_probs=53.2

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHH-hccCCCcEEEEEcCChHHHHHHHHHHHHh---CC-cceEEEec
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIA-SLLRDEGEVVAVDRSHNKVMDIQKLAAEM---GL-KCITTYKL  319 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la-~l~~~~g~V~A~D~s~~rl~~l~~~l~r~---g~-~nv~~~~~  319 (422)
                      +.+++|+.|+|++|..|..|..++ ...++.++|+|+|.++.-.+.+++|++.+   +. +|++++..
T Consensus       222 ~~l~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~~~~~N~~~~~~v~~~~~  289 (409)
T 2py6_A          222 LRFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDTNFASRITVHGC  289 (409)
T ss_dssp             CCCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTSTTGGGEEEECS
T ss_pred             cccCCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHHHhhhccCCCCCEEEEEe
Confidence            346899999999999999999988 45544589999999999999999999983   46 78877664

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=96.33  E-value=0.0026  Score=62.62  Aligned_cols=66  Identities=18%  Similarity=0.067  Sum_probs=50.2

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchh
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDAL  322 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~  322 (422)
                      +...++..++.+|||++||+|..+..+++... ..+++++|.+ ..+.  ++++++.+. .+|+++.+|..
T Consensus       176 ~~~~~~~~~~~~vLDvG~G~G~~~~~l~~~~p-~~~~~~~D~~-~~~~--~~~~~~~~~~~~v~~~~~d~~  242 (348)
T 3lst_A          176 LARAGDFPATGTVADVGGGRGGFLLTVLREHP-GLQGVLLDRA-EVVA--RHRLDAPDVAGRWKVVEGDFL  242 (348)
T ss_dssp             HHHHSCCCSSEEEEEETCTTSHHHHHHHHHCT-TEEEEEEECH-HHHT--TCCCCCGGGTTSEEEEECCTT
T ss_pred             HHHhCCccCCceEEEECCccCHHHHHHHHHCC-CCEEEEecCH-HHhh--cccccccCCCCCeEEEecCCC
Confidence            44556778899999999999999999999864 5789999994 4444  444444454 45999999875

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=96.22  E-value=0.0059  Score=63.17  Aligned_cols=48  Identities=21%  Similarity=0.115  Sum_probs=41.1

Q ss_pred             cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHH
Q 014571           13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQK   63 (422)
Q Consensus        13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~   63 (422)
                      +++++.+.+.+++.||.+ ++++++++.+||.+.+|||||+|+  +++++.
T Consensus         6 ~~~P~w~~~~~~~~~g~e-~~~~~~a~~~~~~~~~lRvN~lk~--~~~~~~   53 (456)
T 3m4x_A            6 TTLPQQFIKKYRLLLGEE-ASDFFSALEQGSVKKGFRWNPLKP--AGLDMV   53 (456)
T ss_dssp             -CCCHHHHHHHHHHHGGG-HHHHHHHHHHCCCCCEEECCTTST--THHHHH
T ss_pred             hhChHHHHHHHHHHhCHH-HHHHHHHcCCCCCCcEEEEcCccH--HHHHHh
Confidence            457788999999999955 999999999999988999999998  666554

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=96.14  E-value=0.0051  Score=60.09  Aligned_cols=80  Identities=15%  Similarity=0.110  Sum_probs=53.4

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec-chhhhhhccCCCCCCcc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL-DALKAVRRKNESNDEPN  336 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~-Da~~~~~~~~~~~~~~~  336 (422)
                      .++++.+|||++|||||.|-..+.+-+ ..+|+|+|+-...-+. -...+.+|...|.+... |.+.+.           
T Consensus        91 ~l~~~~~VlDLGaapGGwsq~~~~~~g-v~~V~avdvG~~~he~-P~~~~ql~w~lV~~~~~~Dv~~l~-----------  157 (321)
T 3lkz_A           91 FLEPVGKVIDLGCGRGGWCYYMATQKR-VQEVRGYTKGGPGHEE-PQLVQSYGWNIVTMKSGVDVFYRP-----------  157 (321)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHTTCTT-EEEEEEECCCSTTSCC-CCCCCBTTGGGEEEECSCCTTSSC-----------
T ss_pred             CCCCCCEEEEeCCCCCcHHHHHHhhcC-CCEEEEEEcCCCCccC-cchhhhcCCcceEEEeccCHhhCC-----------
Confidence            357899999999999999987777643 4589999998652210 00012344445777766 654432           


Q ss_pred             ccCCCCCCCCCceeecCCcc
Q 014571          337 MCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPCS  356 (422)
                            ...+|.|+||.--|
T Consensus       158 ------~~~~D~ivcDigeS  171 (321)
T 3lkz_A          158 ------SECCDTLLCDIGES  171 (321)
T ss_dssp             ------CCCCSEEEECCCCC
T ss_pred             ------CCCCCEEEEECccC
Confidence                  24479999998733

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=96.03  E-value=0.013  Score=57.23  Aligned_cols=84  Identities=10%  Similarity=0.004  Sum_probs=60.9

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcE-EEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGE-VVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~-V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +.+-+|+|+|||.||-+..+.+. +-+.. |+|+|+++..++..+.|.     .+..++..|.+++....-  +      
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~a-G~~~~~v~a~E~d~~a~~ty~~N~-----~~~~~~~~DI~~i~~~~i--~------   79 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDL-GIQVDRYIASEVCEDSITVGMVRH-----QGKIMYVGDVRSVTQKHI--Q------   79 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHT-TBCEEEEEEECCCHHHHHHHHHHT-----TTCEEEECCGGGCCHHHH--H------
T ss_pred             CCCCEEEEeCcCccHHHHHHHHC-CCccceEEEEECCHHHHHHHHHhC-----CCCceeCCChHHccHHHh--c------
Confidence            45678999999999999888775 22222 699999999998888763     334677888887643210  0      


Q ss_pred             CCCCCCCCCceeecCCccccCc
Q 014571          339 NSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                         ....+|.++..+||.+-..
T Consensus        80 ---~~~~~Dll~ggpPCQ~fS~   98 (295)
T 2qrv_A           80 ---EWGPFDLVIGGSPCNDLSI   98 (295)
T ss_dssp             ---HTCCCSEEEECCCCGGGBT
T ss_pred             ---ccCCcCEEEecCCCccccc
Confidence               0135899999999998655

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=95.78  E-value=0.0089  Score=58.80  Aligned_cols=57  Identities=18%  Similarity=0.179  Sum_probs=46.7

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      ..++.+|||++||+|..+..+++.. +..+++++|+ +.+++.+++      ..+++++.+|...
T Consensus       186 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~  242 (352)
T 1fp2_A          186 FDGLESIVDVGGGTGTTAKIICETF-PKLKCIVFDR-PQVVENLSG------SNNLTYVGGDMFT  242 (352)
T ss_dssp             HTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------BTTEEEEECCTTT
T ss_pred             cccCceEEEeCCCccHHHHHHHHHC-CCCeEEEeeC-HHHHhhccc------CCCcEEEeccccC
Confidence            4567899999999999999999876 3579999999 888876654      2468999988753

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=95.74  E-value=0.015  Score=58.10  Aligned_cols=82  Identities=13%  Similarity=0.042  Sum_probs=61.7

Q ss_pred             cceEEEeChhH-HHHHHhcCCCC------CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571          240 EGEIFLQNLPS-IVTAHALDPQK------GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK  312 (422)
Q Consensus       240 ~G~~~~Qd~~S-~lv~~~L~p~p------g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~  312 (422)
                      -|.-++.|..- .-++..+++++      ++.|||++.|+|..|..|++... ..+|+|+|+++..+..+++..   ...
T Consensus        30 lGQnFL~d~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~-~~~vvavE~D~~l~~~L~~~~---~~~  105 (353)
T 1i4w_A           30 YGFKYLWNPTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKF---EGS  105 (353)
T ss_dssp             GGCCCBCCHHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHT---TTS
T ss_pred             CCcCccCCHHHHHHHHHhccCCcccCcCCCCEEEEECCCCCHHHHHHHhhCC-CCEEEEEecCHHHHHHHHHhc---cCC
Confidence            34445555432 23455566664      69999999999999999998632 258999999999999998876   246


Q ss_pred             ceEEEecchhhhh
Q 014571          313 CITTYKLDALKAV  325 (422)
Q Consensus       313 nv~~~~~Da~~~~  325 (422)
                      +++++.+|+.++.
T Consensus       106 ~l~ii~~D~l~~~  118 (353)
T 1i4w_A          106 PLQILKRDPYDWS  118 (353)
T ss_dssp             SCEEECSCTTCHH
T ss_pred             CEEEEECCccchh
Confidence            8999999997664

>1sqw_A Saccharomyces cerevisiae NIP7P homolog; PUA, unknown function; 1.90A {Homo sapiens} SCOP: b.122.1.1 d.17.6.3 PDB: 1t5y_A

Probab=95.74  E-value=0.015  Score=53.07  Aligned_cols=73  Identities=18%  Similarity=0.176  Sum_probs=63.6

Q ss_pred             CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571          122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY  201 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~  201 (422)
                      ....|+|...+...++-|-||+..+|..++.+++.||.|.|+                                ..+..+
T Consensus        93 ~~~kV~Vk~~~E~~flyG~nVfk~~V~~i~e~i~~~~~VvV~--------------------------------n~~d~p  140 (188)
T 1sqw_A           93 AKYKVWIKPGAEQSFLYGNHVLKSGLGRITENTSQYQGVVVY--------------------------------SMADIP  140 (188)
T ss_dssp             CSCEEEECHHHHHHHTTTCCEEGGGEEEECTTCCTTCEEEEE--------------------------------ETTCCE
T ss_pred             cCcEEEECCCceeeEEeccchhHHhhhhcCCCCCCCCEEEEE--------------------------------eCCCCE
Confidence            346889999999999999999999999999999999999999                                346789


Q ss_pred             EEEccCccCHHHHhc-ccCcceeecc
Q 014571          202 IGQGTAMMSRAGIFR-ASEGIAVDMH  226 (422)
Q Consensus       202 Vrvg~a~msreel~~-~~~GiaV~~~  226 (422)
                      +|+|++..|.+++.+ .+.|+.+...
T Consensus       141 LG~G~a~~s~~e~~~~~~~~~vv~~q  166 (188)
T 1sqw_A          141 LGFGVAAKSTQDCRKVDPMAIVVFHQ  166 (188)
T ss_dssp             EEEEEESSCHHHHHHSCTTSEEEEEE
T ss_pred             EEEEEeecCHHHHHhcCCCcEEEEEc
Confidence            999999999999987 5667766533

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=95.74  E-value=0.012  Score=58.45  Aligned_cols=57  Identities=14%  Similarity=0.057  Sum_probs=47.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      ..++.+|||++||+|..+..+++.. +..+++++|+ +..++.+++      ..+++++.+|...
T Consensus       207 ~~~~~~vLDvG~G~G~~~~~l~~~~-~~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~  263 (372)
T 1fp1_D          207 FEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDL-PQVIENAPP------LSGIEHVGGDMFA  263 (372)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT
T ss_pred             cCCCCEEEEeCCCCcHHHHHHHHHC-CCCeEEEeCh-HHHHHhhhh------cCCCEEEeCCccc
Confidence            5678999999999999999999986 4578999999 888876654      2569999998764

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=95.71  E-value=0.02  Score=57.87  Aligned_cols=117  Identities=15%  Similarity=0.116  Sum_probs=78.7

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh-----CC---cceEEEecchhhhhhccCCC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-----GL---KCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~-----g~---~nv~~~~~Da~~~~~~~~~~  331 (422)
                      .+..+||=++.|-|+-...+.+. . ..+|+.+|+++.-++.+++-+...     ..   ++++++..|++.+.....  
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh-~-~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~--  279 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL-K-PKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYA--  279 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT-C-CSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHH--
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc-C-CceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhh--
Confidence            35689999999999988888875 3 479999999999999998865321     11   348999999998764321  


Q ss_pred             CCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHh-ccceeccEEEe
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALV-VGLRIQKVLVL  406 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a-~~lr~~~~~~~  406 (422)
                               ...++||.|++|.+-...+.      .|.        +.   ....-.++.++.+ ..|+.+|+++.
T Consensus       280 ---------~~~~~yDvIIvDl~D~~~s~------~p~--------g~---a~~Lft~eFy~~~~~~L~p~GVlv~  329 (381)
T 3c6k_A          280 ---------KEGREFDYVINDLTAVPIST------SPE--------ED---STWEFLRLILDLSMKVLKQDGKYFT  329 (381)
T ss_dssp             ---------HHTCCEEEEEEECCSSCCCC------C---------------CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred             ---------hccCceeEEEECCCCCcccC------ccc--------Cc---chHHHHHHHHHHHHHhcCCCCEEEE
Confidence                     01356999999986433222      111        11   0112345666665 34888888885

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=95.67  E-value=0.014  Score=57.80  Aligned_cols=80  Identities=13%  Similarity=-0.032  Sum_probs=57.1

Q ss_pred             eEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCCC
Q 014571          264 RILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKDN  343 (422)
Q Consensus       264 ~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~  343 (422)
                      +++|+|||.||.+..+.+.--+--.|.|+|+++...+..+.|..     ...++..|.+++.....            ..
T Consensus         5 ~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N~~-----~~~~~~~DI~~~~~~~~------------~~   67 (333)
T 4h0n_A            5 KILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHNFP-----ETNLLNRNIQQLTPQVI------------KK   67 (333)
T ss_dssp             EEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHCT-----TSCEECCCGGGCCHHHH------------HH
T ss_pred             EEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHhCC-----CCceeccccccCCHHHh------------cc
Confidence            79999999999998887651111357899999999999988742     33456778776532210            01


Q ss_pred             CCCCceeecCCccccCc
Q 014571          344 NYITSQTSDSMKLHKEV  360 (422)
Q Consensus       344 ~~FD~VLvDaPCSg~G~  360 (422)
                      ..+|.++..+||.+-..
T Consensus        68 ~~~D~l~ggpPCQ~fS~   84 (333)
T 4h0n_A           68 WNVDTILMSPPCQPFTR   84 (333)
T ss_dssp             TTCCEEEECCCCCCSEE
T ss_pred             CCCCEEEecCCCcchhh
Confidence            24799999999988544

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=95.61  E-value=0.014  Score=55.32  Aligned_cols=50  Identities=12%  Similarity=0.205  Sum_probs=39.1

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL  311 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~  311 (422)
                      ..+|+.|||.+||.|.-+...+++   ..+.+++|+++.-++.+++|++..++
T Consensus       210 ~~~~~~vlD~f~GsGtt~~~a~~~---gr~~ig~e~~~~~~~~~~~r~~~~~~  259 (260)
T 1g60_A          210 SNPNDLVLDCFMGSGTTAIVAKKL---GRNFIGCDMNAEYVNQANFVLNQLEI  259 (260)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHC---
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHc---CCeEEEEeCCHHHHHHHHHHHHhccC
Confidence            378999999999999755444443   35899999999999999999987654

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=95.50  E-value=0.047  Score=53.27  Aligned_cols=85  Identities=11%  Similarity=0.062  Sum_probs=66.2

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--C---CcceEEEecchhhhhhccC
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--G---LKCITTYKLDALKAVRRKN  329 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g---~~nv~~~~~Da~~~~~~~~  329 (422)
                      ..+.|. ..+||=++.|-|+-+..++..- +..+|+.+|+++.-++..++-+...  |   -++++++.+|++.+...  
T Consensus        78 l~~~p~-pk~VLIiGgGdG~~~revlk~~-~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~--  153 (294)
T 3o4f_A           78 LLAHGH-AKHVLIIGGGDGAMLREVTRHK-NVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ--  153 (294)
T ss_dssp             HHHSSC-CCEEEEESCTTSHHHHHHHTCT-TCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC--
T ss_pred             HhhCCC-CCeEEEECCCchHHHHHHHHcC-CcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh--
Confidence            334444 4699999999999988888763 3468999999999999999887553  2   25699999999987532  


Q ss_pred             CCCCCccccCCCCCCCCCceeecCCc
Q 014571          330 ESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                                  ..++||.|++|.+-
T Consensus       154 ------------~~~~yDvIi~D~~d  167 (294)
T 3o4f_A          154 ------------TSQTFDVIISDCTD  167 (294)
T ss_dssp             ------------SSCCEEEEEESCCC
T ss_pred             ------------ccccCCEEEEeCCC
Confidence                        24679999999864

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=95.40  E-value=0.028  Score=60.34  Aligned_cols=62  Identities=11%  Similarity=-0.015  Sum_probs=48.5

Q ss_pred             CCeEEEecCCCChh---HHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhh
Q 014571          262 GERILDMCAAPGGK---TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA  324 (422)
Q Consensus       262 g~~VLD~CAgpGgK---T~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~  324 (422)
                      +..|||++||+|--   ++..++..+...+|+|+|.++ +...+++..+..|+.+ |+++++|.+.+
T Consensus       358 ~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~N~~~dkVtVI~gd~eev  423 (637)
T 4gqb_A          358 VQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQFEEWGSQVTVVSSDMREW  423 (637)
T ss_dssp             EEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHHHTTGGGEEEEESCTTTC
T ss_pred             CcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHhccCCCeEEEEeCcceec
Confidence            45799999999987   555555544445899999996 5667777788888854 99999999875

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=95.35  E-value=0.0054  Score=53.71  Aligned_cols=62  Identities=10%  Similarity=0.028  Sum_probs=46.2

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      +.+++|++|||+++|.                 +++|.|+.+++.+++++..    ++.+.++|+...+...        
T Consensus         8 ~g~~~g~~vL~~~~g~-----------------v~vD~s~~ml~~a~~~~~~----~~~~~~~d~~~~~~~~--------   58 (176)
T 2ld4_A            8 FGISAGQFVAVVWDKS-----------------SPVEALKGLVDKLQALTGN----EGRVSVENIKQLLQSA--------   58 (176)
T ss_dssp             TTCCTTSEEEEEECTT-----------------SCHHHHHHHHHHHHHHTTT----TSEEEEEEGGGGGGGC--------
T ss_pred             cCCCCCCEEEEecCCc-----------------eeeeCCHHHHHHHHHhccc----CcEEEEechhcCcccc--------
Confidence            4678999999999875                 2399999999999887532    4889999988764210        


Q ss_pred             ccCCCCCCCCCceee
Q 014571          337 MCNSKDNNYITSQTS  351 (422)
Q Consensus       337 ~~~~~~~~~FD~VLv  351 (422)
                          ...+.||.|++
T Consensus        59 ----~~~~~fD~V~~   69 (176)
T 2ld4_A           59 ----HKESSFDIILS   69 (176)
T ss_dssp             ----CCSSCEEEEEE
T ss_pred             ----CCCCCEeEEEE
Confidence                01356899986

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=95.24  E-value=0.046  Score=53.04  Aligned_cols=76  Identities=8%  Similarity=-0.042  Sum_probs=57.7

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD  342 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~  342 (422)
                      .+|+|++||.||.+.-+-+. + --.|.|+|+++..++..+.|.   +   -.++.+|.+++....              
T Consensus         1 mkvidLFsG~GG~~~G~~~a-G-~~~v~a~e~d~~a~~ty~~N~---~---~~~~~~DI~~i~~~~--------------   58 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNH---S---AKLIKGDISKISSDE--------------   58 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHT-T-CEEEEEEECCTTTHHHHHHHC---C---SEEEESCGGGCCGGG--------------
T ss_pred             CeEEEeCcCccHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHC---C---CCcccCChhhCCHhh--------------
Confidence            37999999999999888665 2 236789999999999998873   2   256778888754221              


Q ss_pred             CCCCCceeecCCccccCc
Q 014571          343 NNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       343 ~~~FD~VLvDaPCSg~G~  360 (422)
                      -..+|.++--+||.+--.
T Consensus        59 ~~~~D~l~ggpPCQ~fS~   76 (331)
T 3ubt_Y           59 FPKCDGIIGGPPSQSWSE   76 (331)
T ss_dssp             SCCCSEEECCCCGGGTEE
T ss_pred             CCcccEEEecCCCCCcCC
Confidence            124799999999998655

>2aus_C Pseudouridine synthase; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_A 3lwo_A* 3lwq_A* 3lwp_A 3lwv_A 3hax_A* 2hvy_A* 3hay_A* 2ey4_A 2rfk_A 3mqk_A 3hjw_A* 3hjy_A

Probab=95.10  E-value=0.034  Score=55.23  Aligned_cols=74  Identities=31%  Similarity=0.507  Sum_probs=62.8

Q ss_pred             CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571          122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY  201 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~  201 (422)
                      +.+.|+|+...+..+.+|+.++.||+...+.+++.|+.|.++                                ...+.+
T Consensus       249 ~~p~V~L~de~a~~V~nGq~L~~~gv~~~~~~i~~gd~V~V~--------------------------------~~~G~f  296 (334)
T 2aus_C          249 HLPKIWIKDSAVAAVAHGANLTVPGIVKLNAGIKKGDLVAIM--------------------------------TLKDEL  296 (334)
T ss_dssp             TSCEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEE--------------------------------ETTCCE
T ss_pred             cccEEEECHHHHHHHHCCCccccCcccccccccCCCCEEEEE--------------------------------ecCCeE
Confidence            567889999999999999999999988777778889988888                                234679


Q ss_pred             EEEccCccCHHHHhcccCcceeeccc
Q 014571          202 IGQGTAMMSRAGIFRASEGIAVDMHN  227 (422)
Q Consensus       202 Vrvg~a~msreel~~~~~GiaV~~~~  227 (422)
                      |+++.+.++.+++....+|..+++..
T Consensus       297 LAIGe~~~s~~e~~~~~~G~~vKp~r  322 (334)
T 2aus_C          297 VALGKAMMSTQEMIERSKGIAVDVEK  322 (334)
T ss_dssp             EEEEEESSCHHHHHHCSSSEEEEEEE
T ss_pred             EEEEEeccCchhccccCCCeEEEEEE
Confidence            99999999999999888897766543

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=95.04  E-value=0.018  Score=56.85  Aligned_cols=79  Identities=6%  Similarity=-0.067  Sum_probs=55.8

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEE-EEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEV-VAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V-~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      .-+++|+|||.||.+..+.+.--+--.| .|+|+++..++..+.|...   .   ++..|.+++....-           
T Consensus        10 ~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~~~---~---~~~~DI~~~~~~~i-----------   72 (327)
T 3qv2_A           10 QVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNFKE---E---VQVKNLDSISIKQI-----------   72 (327)
T ss_dssp             CEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHHCC---C---CBCCCTTTCCHHHH-----------
T ss_pred             CCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHCCC---C---cccCChhhcCHHHh-----------
Confidence            4589999999999998887751011246 6999999999999988521   1   45667665432110           


Q ss_pred             CCCCCCCceeecCCcccc
Q 014571          341 KDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCSg~  358 (422)
                       ....+|.++..+||.+-
T Consensus        73 -~~~~~Dil~ggpPCQ~f   89 (327)
T 3qv2_A           73 -ESLNCNTWFMSPPCQPY   89 (327)
T ss_dssp             -HHTCCCEEEECCCCTTC
T ss_pred             -ccCCCCEEEecCCccCc
Confidence             01257999999999987

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=94.57  E-value=0.026  Score=56.12  Aligned_cols=57  Identities=12%  Similarity=0.132  Sum_probs=46.8

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      ..++.+|||++||+|..+..+++.. +..+++++|+ +..++.+++      ..+|+++.+|...
T Consensus       201 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~  257 (368)
T 3reo_A          201 FEGLTTIVDVGGGTGAVASMIVAKY-PSINAINFDL-PHVIQDAPA------FSGVEHLGGDMFD  257 (368)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT
T ss_pred             ccCCCEEEEeCCCcCHHHHHHHHhC-CCCEEEEEeh-HHHHHhhhh------cCCCEEEecCCCC
Confidence            5668899999999999999999986 4578999999 777766553      2579999999764

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=94.56  E-value=0.034  Score=54.65  Aligned_cols=57  Identities=18%  Similarity=0.187  Sum_probs=45.7

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      ..++.+|||++||+|..+..+++.. +..+++++|. +..++.+++      ..+|+++.+|...
T Consensus       191 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~d~~~  247 (358)
T 1zg3_A          191 FEGLESLVDVGGGTGGVTKLIHEIF-PHLKCTVFDQ-PQVVGNLTG------NENLNFVGGDMFK  247 (358)
T ss_dssp             HHTCSEEEEETCTTSHHHHHHHHHC-TTSEEEEEEC-HHHHSSCCC------CSSEEEEECCTTT
T ss_pred             ccCCCEEEEECCCcCHHHHHHHHHC-CCCeEEEecc-HHHHhhccc------CCCcEEEeCccCC
Confidence            3467899999999999999999986 4578999999 677765543      3569999988754

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=94.47  E-value=0.031  Score=55.43  Aligned_cols=61  Identities=16%  Similarity=0.132  Sum_probs=48.7

Q ss_pred             HhcC-CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhh
Q 014571          255 HALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALK  323 (422)
Q Consensus       255 ~~L~-p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~  323 (422)
                      ..++ ..++.+|||++||+|..+..+++.. +..+++++|+ +..++.+++      ..+|+++.+|...
T Consensus       194 ~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-~~~~~~a~~------~~~v~~~~~D~~~  255 (364)
T 3p9c_A          194 ELYHGFEGLGTLVDVGGGVGATVAAIAAHY-PTIKGVNFDL-PHVISEAPQ------FPGVTHVGGDMFK  255 (364)
T ss_dssp             HHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHTTCCC------CTTEEEEECCTTT
T ss_pred             HhcccccCCCEEEEeCCCCCHHHHHHHHHC-CCCeEEEecC-HHHHHhhhh------cCCeEEEeCCcCC
Confidence            3444 6678999999999999999999986 4578999999 777765543      2579999999764

>2apo_A Probable tRNA pseudouridine synthase B; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: b.122.1.1 d.265.1.2

Probab=94.47  E-value=0.06  Score=53.85  Aligned_cols=73  Identities=34%  Similarity=0.552  Sum_probs=61.6

Q ss_pred             CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571          122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY  201 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~  201 (422)
                      ..+.|+|+..++.++..|+.++.||+...+..+..|+.|.++                                ...+.+
T Consensus       268 ~lP~v~l~~~~~~~i~nG~~L~~pgi~~~~~~i~~gd~V~v~--------------------------------~~~G~f  315 (357)
T 2apo_A          268 HLKKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVE--------------------------------TLKGEA  315 (357)
T ss_dssp             TSEEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEE--------------------------------CTTSCE
T ss_pred             cCcEEEECHHHHHHHhCcCccCCCcccccccccCCCCeEEEE--------------------------------cCCCEE
Confidence            467889999999999999999999987776678888888887                                335679


Q ss_pred             EEEccCccCHHHHhcccCcceeecc
Q 014571          202 IGQGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       202 Vrvg~a~msreel~~~~~GiaV~~~  226 (422)
                      |+++.+.++.+++....+|..+++.
T Consensus       316 lAIGea~~~~~ei~~~~kG~vvKp~  340 (357)
T 2apo_A          316 VAVGKALMNTKEILNADKGVAVDVE  340 (357)
T ss_dssp             EEEEEESSCHHHHHHCSSSEEEEEE
T ss_pred             EEEEEeccccccccccCCCeEEEEE
Confidence            9999999999999988889766654

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=94.40  E-value=0.085  Score=51.61  Aligned_cols=103  Identities=13%  Similarity=-0.011  Sum_probs=65.1

Q ss_pred             CCCCCCeEEEecC------CCChhHHHHHhccCCC-cEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          258 DPQKGERILDMCA------APGGKTTAIASLLRDE-GEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       258 ~p~pg~~VLD~CA------gpGgKT~~la~l~~~~-g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      .+.-|++|||++|      |||+  ..+.+. .+. +.|+++|+.+-..           ..+ .++++|.+...     
T Consensus       106 ~vp~gmrVLDLGA~s~kg~APGS--~VLr~~-~p~g~~VVavDL~~~~s-----------da~-~~IqGD~~~~~-----  165 (344)
T 3r24_A          106 AVPYNMRVIHFGAGSDKGVAPGT--AVLRQW-LPTGTLLVDSDLNDFVS-----------DAD-STLIGDCATVH-----  165 (344)
T ss_dssp             CCCTTCEEEEESCCCTTSBCHHH--HHHHHH-SCTTCEEEEEESSCCBC-----------SSS-EEEESCGGGEE-----
T ss_pred             eecCCCEEEeCCCCCCCCCCCcH--HHHHHh-CCCCcEEEEeeCccccc-----------CCC-eEEEccccccc-----
Confidence            3557999999997      9998  444555 555 5999999986321           122 44889965422     


Q ss_pred             CCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhccceeccEEEe
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLVL  406 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~lr~~~~~~~  406 (422)
                                 ....||.||.|.-..-+|.     +.-+     +...   ..|.++-.++..+  -|+.+|.++.
T Consensus       166 -----------~~~k~DLVISDMAPNtTG~-----~D~d-----~~Rs---~~L~ElALdfA~~--~LkpGGsFvV  215 (344)
T 3r24_A          166 -----------TANKWDLIISDMYDPRTKH-----VTKE-----NDSK---EGFFTYLCGFIKQ--KLALGGSIAV  215 (344)
T ss_dssp             -----------ESSCEEEEEECCCCTTSCS-----SCSC-----CCCC---CTHHHHHHHHHHH--HEEEEEEEEE
T ss_pred             -----------cCCCCCEEEecCCCCcCCc-----cccc-----hhHH---HHHHHHHHHHHHH--hCcCCCEEEE
Confidence                       1356899999976655665     1111     1111   2466665555543  3678888887

>3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A

Probab=93.79  E-value=0.11  Score=53.94  Aligned_cols=95  Identities=11%  Similarity=0.001  Sum_probs=59.5

Q ss_pred             CCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCC-cc-ccC
Q 014571          262 GERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE-PN-MCN  339 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~-~~-~~~  339 (422)
                      .-+++|+|||.||.+.-+.+.  +--.|+|+|+++..++..+.|...  .++..++..|.+++.......... .. ...
T Consensus        88 ~~~viDLFaG~GGlslG~~~a--G~~~v~avE~d~~A~~ty~~N~~~--~p~~~~~~~DI~~i~~~~~~~~~~~~~~~~i  163 (482)
T 3me5_A           88 AFRFIDLFAGIGGIRRGFESI--GGQCVFTSEWNKHAVRTYKANHYC--DPATHHFNEDIRDITLSHQEGVSDEAAAEHI  163 (482)
T ss_dssp             SEEEEEESCTTSHHHHHHHTT--TEEEEEEECCCHHHHHHHHHHSCC--CTTTCEEESCTHHHHCTTCTTSCHHHHHHHH
T ss_pred             cceEEEecCCccHHHHHHHHC--CCEEEEEEeCCHHHHHHHHHhccc--CCCcceeccchhhhhhccccccchhhHHhhh
Confidence            458999999999999888765  223589999999999988877411  123456778988765321000000 00 000


Q ss_pred             CCCCCCCCceeecCCccccCc
Q 014571          340 SKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      ......+|.++..+||-+-..
T Consensus       164 ~~~~~~~Dvl~gGpPCQ~FS~  184 (482)
T 3me5_A          164 RQHIPEHDVLLAGFPCQPFSL  184 (482)
T ss_dssp             HHHSCCCSEEEEECCCCCC--
T ss_pred             hhcCCCCCEEEecCCCcchhh
Confidence            001134799999999998654

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=92.84  E-value=0.094  Score=51.19  Aligned_cols=26  Identities=38%  Similarity=0.454  Sum_probs=21.3

Q ss_pred             CCCccEEEeecCCCCHHHHHHHHHHH
Q 014571           42 PSCYSCIRVNTLKTTTDDVIQKLLAI   67 (422)
Q Consensus        42 pp~~~~~Rvnt~~~~~~~~~~~l~~~   67 (422)
                      .+.-.++||||+|+|++++++.|.+.
T Consensus         8 ~~~p~~lRvN~lk~~~~~~~~~L~~~   33 (309)
T 2b9e_A            8 SQLPRFVRVNTLKTCSDDVVDYFKRQ   33 (309)
T ss_dssp             -CCCEEEEECTTTCCHHHHHHHHHHT
T ss_pred             CCCCeEEEEeCCCCCHHHHHHHHHhC
Confidence            34557899999999999999988754

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=92.70  E-value=0.12  Score=56.18  Aligned_cols=64  Identities=14%  Similarity=0.087  Sum_probs=47.3

Q ss_pred             CCeEEEecCCCChhHHHHHhc---cC---------CCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhh
Q 014571          262 GERILDMCAAPGGKTTAIASL---LR---------DEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVR  326 (422)
Q Consensus       262 g~~VLD~CAgpGgKT~~la~l---~~---------~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~  326 (422)
                      +..|||++||+|-.+...+..   .+         ...+|+|+|.++.-+..++.+.. .|+.+ |+++.+|.+.+..
T Consensus       410 ~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-Ng~~d~VtVI~gd~eev~l  486 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-RTWKRRVTIIESDMRSLPG  486 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-HTTTTCSEEEESCGGGHHH
T ss_pred             CcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-cCCCCeEEEEeCchhhccc
Confidence            457999999999986433222   22         23599999999977766666554 67755 9999999998754

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=92.29  E-value=0.078  Score=46.72  Aligned_cols=39  Identities=15%  Similarity=0.065  Sum_probs=31.9

Q ss_pred             CCCCeEEEecCCCC-hhHHHHHhccCCCcEEEEEcCChHHHH
Q 014571          260 QKGERILDMCAAPG-GKTTAIASLLRDEGEVVAVDRSHNKVM  300 (422)
Q Consensus       260 ~pg~~VLD~CAgpG-gKT~~la~l~~~~g~V~A~D~s~~rl~  300 (422)
                      .++.+|||++||+| .-+..|++..  .-.|+|+|+++..+.
T Consensus        34 ~~~~rVlEVG~G~g~~vA~~La~~~--g~~V~atDInp~Av~   73 (153)
T 2k4m_A           34 GPGTRVVEVGAGRFLYVSDYIRKHS--KVDLVLTDIKPSHGG   73 (153)
T ss_dssp             CSSSEEEEETCTTCCHHHHHHHHHS--CCEEEEECSSCSSTT
T ss_pred             CCCCcEEEEccCCChHHHHHHHHhC--CCeEEEEECCccccc
Confidence            45789999999999 5888888742  357999999987766

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=91.49  E-value=0.14  Score=48.53  Aligned_cols=38  Identities=29%  Similarity=0.330  Sum_probs=29.5

Q ss_pred             ccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccccccCCCCCcEEEE
Q 014571           45 YSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPGLEYVVFV  105 (422)
Q Consensus        45 ~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~  105 (422)
                      ..++||||+|+|++++++.|.+.         |             +.+.+ ++.++.+.+
T Consensus        10 ~~~~rvn~~~~~~~~~~~~l~~~---------g-------------~~~~~-~~~~~~~~~   47 (274)
T 3ajd_A           10 MQFIRVNTLKINPEVLKKRLENK---------G-------------VVLEK-TFLDYAFEV   47 (274)
T ss_dssp             CEEEEECTTTCCHHHHHHHHHTT---------T-------------CEEEE-CSSTTEEEE
T ss_pred             CeEEEEeCCCCCHHHHHHHHHHC---------C-------------CeecC-CCCCceEEE
Confidence            47899999999999998887643         3             33344 778888887

>4ft4_B DNA (cytosine-5)-methyltransferase 1; chromodomain, BAH domain, DNA methyltransferase domain, H3K9 binding, methylation, transferase; HET: DNA MLY SAH; 2.70A {Zea mays} PDB: 4ft2_A* 4fsx_A*

Probab=90.94  E-value=1.5  Score=47.64  Aligned_cols=46  Identities=17%  Similarity=0.117  Sum_probs=36.0

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCC----CcEEEEEcCChHHHHHHHHH
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRD----EGEVVAVDRSHNKVMDIQKL  305 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~----~g~V~A~D~s~~rl~~l~~~  305 (422)
                      +.--+|+|++||.||.++-+.+....    --.++|+|+++..++..+.|
T Consensus       210 ~k~ltvIDLFAG~GGls~Gfe~AG~~~~~~f~vv~AvE~d~~A~~Ty~~N  259 (784)
T 4ft4_B          210 TRTATLLDLYSGCGGMSTGLCLGAALSGLKLETRWAVDFNSFACQSLKYN  259 (784)
T ss_dssp             CEEEEEEEETCTTSHHHHHHHHHHHHHTEEEEEEEEEESCHHHHHHHHHH
T ss_pred             CCCCeEEEeCcCccHHHHHHHHhCcccCCceeEEEEEeCCHHHHHHHHHH
Confidence            34457999999999999988765210    02688999999999999887

>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA methyltransferase fold, maintenance methyla transferase; HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A* 3pt6_A* 3pt9_A* 4da4_A*

Probab=90.92  E-value=0.75  Score=51.86  Aligned_cols=91  Identities=9%  Similarity=-0.014  Sum_probs=60.0

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh----ccCCCCCCcc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR----RKNESNDEPN  336 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~----~~~~~~~~~~  336 (422)
                      ..-+++|+|||.||.+.-+.+. +-.-.|.|+|+++..++..+.|     .++..++..|...+..    .+......  
T Consensus       539 ~~l~~iDLFaG~GGlslGl~~A-G~~~vv~avEid~~A~~ty~~N-----~p~~~~~~~DI~~l~~~~~~~di~~~~~--  610 (1002)
T 3swr_A          539 PKLRTLDVFSGCGGLSEGFHQA-GISDTLWAIEMWDPAAQAFRLN-----NPGSTVFTEDCNILLKLVMAGETTNSRG--  610 (1002)
T ss_dssp             CCEEEEEESCTTSHHHHHHHHH-TSEEEEEEECSSHHHHHHHHHH-----CTTSEEECSCHHHHHHHHHHTCSBCTTC--
T ss_pred             CCCeEEEeccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHh-----CCCCccccccHHHHhhhccchhhhhhhh--
Confidence            3457999999999999988765 1112588999999999988877     3456677788765421    11000000  


Q ss_pred             ccCCCCCCCCCceeecCCccccCc
Q 014571          337 MCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                       ......+.+|.|+.-+||.+--.
T Consensus       611 -~~lp~~~~vDll~GGpPCQ~FS~  633 (1002)
T 3swr_A          611 -QRLPQKGDVEMLCGGPPCQGFSG  633 (1002)
T ss_dssp             -CBCCCTTTCSEEEECCCCTTCCS
T ss_pred             -hhcccCCCeeEEEEcCCCcchhh
Confidence             00011346899999999988544

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=88.69  E-value=0.42  Score=46.75  Aligned_cols=49  Identities=18%  Similarity=0.239  Sum_probs=36.7

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCCh---HHHHHHHHHHHHhC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSH---NKVMDIQKLAAEMG  310 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~---~rl~~l~~~l~r~g  310 (422)
                      -.+|+.|||-+||.|. |.+.|..++  -+-+++|+++   .-++.+++++++.|
T Consensus       240 ~~~~~~vlDpF~GsGt-t~~aa~~~~--r~~ig~e~~~~~~~~~~~~~~Rl~~~~  291 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGV-TARVAIQEG--RNSICTDAAPVFKEYYQKQLTFLQDDG  291 (319)
T ss_dssp             SCTTCEEEETTCTTCH-HHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC----
T ss_pred             CCCCCEEEecCCCCCH-HHHHHHHcC--CcEEEEECCccHHHHHHHHHHHHHHcc
Confidence            4689999999999997 344444443  5799999999   99999999988876

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=88.11  E-value=0.35  Score=47.21  Aligned_cols=63  Identities=6%  Similarity=-0.009  Sum_probs=49.2

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      -.+|+.|||-+||.|. |.+.|..++  -+.+++|+++.-++.+++++++.+.. ...++.|+++..
T Consensus       250 ~~~~~~VlDpF~GsGt-t~~aa~~~g--r~~ig~e~~~~~~~~~~~r~~~~~~~-~~~~~~~~~~i~  312 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNT-TGLVAERES--RKWISFEMKPEYVAASAFRFLDNNIS-EEKITDIYNRIL  312 (323)
T ss_dssp             CCTTCEEEETTCTTCH-HHHHHHHTT--CEEEEEESCHHHHHHHHGGGSCSCSC-HHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCH-HHHHHHHcC--CCEEEEeCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHH
Confidence            4789999999999997 444555543  58999999999999999998887753 455566777654

>4dkj_A Cytosine-specific methyltransferase; CG-specificity, DNA intercalation, CPG sequence, cytosine C5 methylation; HET: DNA C37 5CM SAH; 2.15A {Mycoplasma penetrans}

Probab=87.62  E-value=0.4  Score=48.64  Aligned_cols=45  Identities=11%  Similarity=0.187  Sum_probs=35.3

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcE----EEEEcCChHHHHHHHHHHH
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGE----VVAVDRSHNKVMDIQKLAA  307 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~----V~A~D~s~~rl~~l~~~l~  307 (422)
                      -+|+|+|||.||-+..+-+.-.+--.    |.|+|+++..++..+.|..
T Consensus        11 lrvldLFsGiGG~~~Gl~~aG~~~~~~~~~v~avEid~~A~~ty~~n~~   59 (403)
T 4dkj_A           11 IKVFEAFAGIGSQFKALKNIARSKNWEIQHSGMVEWFVDAIVSYVAIHS   59 (403)
T ss_dssp             EEEEEETCTTCHHHHHHHHHHHHHTEEEEEEEEECCBHHHHHHHHHHHC
T ss_pred             ceEEEEecCcCHHHHHHHHhCCccccceeeEEEEecCHHHHHHHHHHcC
Confidence            48999999999999888765110113    8899999999999888764

>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus musculus} PDB: 3av5_A* 3av6_A*

Probab=87.52  E-value=1.2  Score=51.50  Aligned_cols=93  Identities=10%  Similarity=-0.015  Sum_probs=59.7

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccC--CCCCCcccc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKN--ESNDEPNMC  338 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~--~~~~~~~~~  338 (422)
                      ..-+++|+|||.||.+.-+.+. +-.-.|.|+|+++..++..+.|.     ++..++..|...+.....  ....... .
T Consensus       850 ~~l~viDLFsG~GGlslGfe~A-G~~~vv~avEid~~A~~ty~~N~-----p~~~~~~~DI~~l~~~~~~gdi~~~~~-~  922 (1330)
T 3av4_A          850 PKLRTLDVFSGCGGLSEGFHQA-GISETLWAIEMWDPAAQAFRLNN-----PGTTVFTEDCNVLLKLVMAGEVTNSLG-Q  922 (1330)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHT-TSEEEEEEECCSHHHHHHHHHHC-----TTSEEECSCHHHHHHHHTTTCSBCSSC-C
T ss_pred             CCceEEecccCccHHHHHHHHC-CCCceEEEEECCHHHHHHHHHhC-----CCCcEeeccHHHHhHhhhccchhhhhh-h
Confidence            4568999999999999988765 11125889999999999988872     445677777765432100  0000000 0


Q ss_pred             CCCCCCCCCceeecCCccccCc
Q 014571          339 NSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      .....+.+|.|+--+||-+--.
T Consensus       923 ~lp~~~~vDvl~GGpPCQ~FS~  944 (1330)
T 3av4_A          923 RLPQKGDVEMLCGGPPCQGFSG  944 (1330)
T ss_dssp             BCCCTTTCSEEEECCCCTTTCS
T ss_pred             hccccCccceEEecCCCccccc
Confidence            0011246899999999988543

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=85.15  E-value=1  Score=44.77  Aligned_cols=52  Identities=21%  Similarity=0.278  Sum_probs=41.0

Q ss_pred             HhcCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC
Q 014571          255 HALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL  311 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~  311 (422)
                      ...++++|++||-.+||+ |.-+.++|..++ ..+|+++|.++.|++.++    ++|.
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa  231 (398)
T 2dph_A          179 VSAGVKPGSHVYIAGAGPVGRCAAAGARLLG-AACVIVGDQNPERLKLLS----DAGF  231 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHH----TTTC
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEEcCCHHHHHHHH----HcCC
Confidence            456789999999998876 667778887764 248999999999987654    4676

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=83.63  E-value=2.3  Score=41.00  Aligned_cols=53  Identities=19%  Similarity=0.198  Sum_probs=41.8

Q ss_pred             HhcCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          255 HALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      ....+++|++||-.+||+ |.-+.++|..++  .+|+++|.++.|++.++    ++|.+.
T Consensus       160 ~~~~~~~g~~VlV~GaG~vG~~a~qla~~~G--a~Vi~~~~~~~~~~~~~----~lGa~~  213 (340)
T 3s2e_A          160 KVTDTRPGQWVVISGIGGLGHVAVQYARAMG--LRVAAVDIDDAKLNLAR----RLGAEV  213 (340)
T ss_dssp             HTTTCCTTSEEEEECCSTTHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             HHcCCCCCCEEEEECCCHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHHH----HcCCCE
Confidence            455789999999988876 777778888764  49999999999988654    578653

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=82.95  E-value=0.3  Score=49.48  Aligned_cols=57  Identities=12%  Similarity=0.076  Sum_probs=44.2

Q ss_pred             ccCCCCchhhhhhhcccCC-CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeec
Q 014571          169 PTLDGGWGLGITRGTVLQG-SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDM  225 (422)
Q Consensus       169 ~~~~p~W~~~~~r~~~~~~-~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~  225 (422)
                      ++++|.|+++.++..+... ..+..++++++++++|+|+.+++++++.+  ...|+.++.
T Consensus       142 ~~~~p~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~Rvn~~~~~~~~~~~~l~~~g~~~~~  201 (429)
T 1sqg_A          142 RYLHPSWLLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFP  201 (429)
T ss_dssp             GGCSCHHHHHHHHHHCTTTHHHHHHHHTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEEC
T ss_pred             hhcCcHHHHHHHHHHhhHHHHHHHHhCCCCCCeEEEEcCCCCCHHHHHHHHHhCCCceee
Confidence            6899999999988876521 23556778899999999999999998876  346766553

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=81.82  E-value=2.2  Score=42.16  Aligned_cols=53  Identities=21%  Similarity=0.248  Sum_probs=40.3

Q ss_pred             HhcCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571          255 HALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK  312 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~  312 (422)
                      ..+.+++|++||-.+||+ |.-+.++|..++ ..+|+++|.++.|++.++    ++|.+
T Consensus       179 ~~~~~~~g~~VlV~GaG~vG~~aiqlAk~~G-a~~Vi~~~~~~~~~~~a~----~lGa~  232 (398)
T 1kol_A          179 VTAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAK----AQGFE  232 (398)
T ss_dssp             HHTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCE
T ss_pred             HHcCCCCCCEEEEECCcHHHHHHHHHHHHCC-CCeEEEEcCCHHHHHHHH----HcCCc
Confidence            345789999999988765 556677777764 237999999999988774    47874

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=80.52  E-value=2.4  Score=41.23  Aligned_cols=54  Identities=24%  Similarity=0.305  Sum_probs=40.4

Q ss_pred             HhcCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          255 HALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      ....+++|++||-.+||+ |.-+.++|..++ ..+|+++|.++.|++.++    ++|.+.
T Consensus       165 ~~~~~~~g~~VlV~GaG~vG~~aiqlak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~  219 (356)
T 1pl8_A          165 RRGGVTLGHKVLVCGAGPIGMVTLLVAKAMG-AAQVVVTDLSATRLSKAK----EIGADL  219 (356)
T ss_dssp             HHHTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             HhcCCCCCCEEEEECCCHHHHHHHHHHHHcC-CCEEEEECCCHHHHHHHH----HhCCCE
Confidence            456789999999998765 555667777653 238999999999987664    578753

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=80.18  E-value=0.27  Score=50.16  Aligned_cols=60  Identities=13%  Similarity=0.099  Sum_probs=45.8

Q ss_pred             cccccCCCCchhhhhhhcccCC-CCCCCccc-CCCceEEEEccCccCHHHHhc--ccCcceeec
Q 014571          166 VEQPTLDGGWGLGITRGTVLQG-SQTDPYYF-ERSGLYIGQGTAMMSRAGIFR--ASEGIAVDM  225 (422)
Q Consensus       166 l~~~~~~p~W~~~~~r~~~~~~-~~~~~~~~-~~~~v~Vrvg~a~msreel~~--~~~GiaV~~  225 (422)
                      +.-.+++|.|+++.++..+... ..+.++++ +++++++|+|+.+.+++++.+  ...|+.++.
T Consensus       151 ~~~~~~~P~w~~~~~~~~~g~~~~~~~~a~~~~~~~~~~Rvn~~k~~~~~~~~~L~~~g~~~~~  214 (450)
T 2yxl_A          151 LEWKYLAPSWLIERVKGILGDETEDFFRSVNKRHEWISIRVNTLKANVEEVIGELEEDGVEVVR  214 (450)
T ss_dssp             HHHHHTSCHHHHHHHHHHHGGGHHHHHHHHHCCCCEEEEEECTTTCCHHHHHHHHHHTTCCEEE
T ss_pred             hhhHhcCcHHHHHHHHHHhhHHHHHHHHhcCCCCCCEEEEEcCCCCCHHHHHHHHHhCCcccee
Confidence            4446899999999888776511 23556788 899999999999999998876  356776553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	422
d2b9ea1	293	c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens)	2e-09
d2apoa1	85	b.122.1.1 (A:247-331) Pseudouridine synthase II Tr	5e-07
d1ixka_	313	c.66.1.38 (A:) Hypothetical methyltransferase PH13	3e-06
d2ey4a1	84	b.122.1.1 (A:253-336) Pseudouridine synthase II Tr	6e-06
d1q7ha1	85	b.122.1.1 (A:69-153) Hypothetical protein Ta1423,	1e-05
d1nt2a_	209	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Arch	2e-05
d1g8aa_	227	c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyro	1e-04
d2b25a1	324	c.66.1.13 (A:6-329) Hypothetical protein FLJ20628	1e-04
d2cx1a1	93	b.122.1.1 (A:91-183) Hypothetical protein APE0525,	1e-04
d1sqga2	284	c.66.1.38 (A:145-428) Ribosomal RNA small subunit	4e-04
d1sqga2	284	c.66.1.38 (A:145-428) Ribosomal RNA small subunit	0.003
d1iq8a3	77	b.122.1.1 (A:506-582) Archaeosine tRNA-guanine tra	5e-04
d1yb2a1	250	c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {T	0.002
d1r3ea1	81	b.122.1.1 (A:238-318) Pseudouridine synthase II Tr	0.002

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (133), Expect = 2e-09
 Identities = 31/120 (25%), Positives = 56/120 (46%), Gaps = 3/120 (2%)

Query: 219 EGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTA 278
           E +       + + P +     G + LQ+  S + A  LDP  G  ++D CAAPG KT+ 
Sbjct: 55  ELLVFPAQTDLHEHPLY---RAGHLILQDRASCLPAMLLDPPPGSHVIDACAAPGNKTSH 111

Query: 279 IASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC 338
           +A+LL+++G++ A D    ++  +  L A  G+ C    + D L         ++   + 
Sbjct: 112 LAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSPSDPRYHEVHYIL 171

>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 85

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Pseudouridine synthase II TruB, C-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 45.1 bits (107), Expect = 5e-07
 Identities = 27/113 (23%), Positives = 42/113 (37%), Gaps = 33/113 (29%)

Query: 124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGT 183
           K+V+V     +A+  GA VYV G+   S  + KG+ V V                     
Sbjct: 3   KKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLV--------------------- 41

Query: 184 VLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
                          G  +  G A+M+   I  A +G+AVD+  R++     Y
Sbjct: 42  -----------ETLKGEAVAVGKALMNTKEILNADKGVAVDV-ERVYMDRGTY 82

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 313

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 46.2 bits (108), Expect = 3e-06
 Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 8/59 (13%)

Query: 6  RYSYSPLLRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKL 64
          R  YS L        + + + +G +   RI++A+ +P    C RVNTLK +  D++++L
Sbjct: 11 RLGYSKLF------ADRYFQLWG-ERAIRIAEAMEKPL-PRCFRVNTLKISVQDLVKRL 61

>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 84

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Pseudouridine synthase II TruB, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

 Score = 42.0 bits (99), Expect = 6e-06
 Identities = 25/114 (21%), Positives = 43/114 (37%), Gaps = 34/114 (29%)

Query: 123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRG 182
           PK V +      AV  GA + VPG+    + +++GD+VA+                    
Sbjct: 2   PK-VWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAI-------------------- 40

Query: 183 TVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFY 236
                              +  G AMM+   +   ++GIAVD+  ++F    +Y
Sbjct: 41  -------MTLKDEL-----VALGKAMMTSQEMLEKTKGIAVDVE-KVFMPRDWY 81

>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 85

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Hypothetical protein Ta1423, C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 10/37 (27%), Positives = 20/37 (54%)

Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
           V V       +L G+ ++ PG+++    + KGD++ V
Sbjct: 5   VTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFV 41

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 209

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

 Score = 43.2 bits (101), Expect = 2e-05
 Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 1/60 (1%)

Query: 251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG 310
           I+  H L  +  ER+L + AA G   + +A ++ +   + AV+ S      + +L  E  
Sbjct: 46  ILKGHRLKLRGDERVLYLGAASGTTVSHLADIVDEG-IIYAVEYSAKPFEKLLELVRERN 104

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 227

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 40.9 bits (95), Expect = 1e-04
 Identities = 10/81 (12%), Positives = 28/81 (34%)

Query: 253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK 312
                  + G+ +L +  A G   + ++ ++  EG++  ++ S   + ++  +  E    
Sbjct: 65  GLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEERRNI 124

Query: 313 CITTYKLDALKAVRRKNESND 333
                     +  R      D
Sbjct: 125 VPILGDATKPEEYRALVPKVD 145

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} Length = 324

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 1e-04
 Identities = 9/84 (10%), Positives = 29/84 (34%)

Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCI 314
             +D   G+ +L+  +  GG +  ++  +  +G V++ +   +     +K          
Sbjct: 92  SMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWK 151

Query: 315 TTYKLDALKAVRRKNESNDEPNMC 338
            ++  +    V   ++        
Sbjct: 152 LSHVEEWPDNVDFIHKDISGATED 175

>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525, C-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 93

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Hypothetical protein APE0525, C-terminal domain
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 38.3 bits (89), Expect = 1e-04
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
            V+V +  A A+ +GA + +PGV+       +GDVVA 
Sbjct: 3   VVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAA 40

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 39.7 bits (91), Expect = 4e-04
 Identities = 31/116 (26%), Positives = 51/116 (43%), Gaps = 4/116 (3%)

Query: 218 SEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTT 277
            + + ++    +  LP F D     + +Q+  +      L PQ GE ILD+CAAPGGKTT
Sbjct: 62  PDAVRLETPAPVHALPGFEDGW---VTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTT 118

Query: 278 AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND 333
            I  +  +  +VVAVD    ++  +      +G+K           +     +  D
Sbjct: 119 HILEVAPEA-QVVAVDIDEQRLSRVYDNLKRLGMKATVKQGDGRYPSQWCGEQQFD 173

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} Length = 284

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 8/44 (18%), Positives = 18/44 (40%), Gaps = 2/44 (4%)

Query: 21 EYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKL 64
          +   +AY  + +  I +A  +      +R+N    + D  +  L
Sbjct: 7  KRLQKAYP-EQWQSIVEANNQRP-PMWLRINRTHHSRDSWLALL 48

>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine transglycosylase, C3 domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 77

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Archaeosine tRNA-guanine transglycosylase, C3 domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 36.4 bits (84), Expect = 5e-04
 Identities = 9/41 (21%), Positives = 17/41 (41%)

Query: 122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
           P   V+V+++      +G  V+   V+     +   D V V
Sbjct: 1   PRMRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLV 41

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} Length = 250

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

 Score = 37.3 bits (86), Expect = 0.002
 Identities = 10/55 (18%), Positives = 21/55 (38%)

Query: 255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM 309
                + G  IL++    G  ++ I   L  +G +  V+R  + +       +E 
Sbjct: 79  MRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF 133

>d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 81

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Pseudouridine synthase II TruB, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 34.4 bits (79), Expect = 0.002
 Identities = 10/37 (27%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAV 162
           V+V ++  + +L G+Q+++  +       +KG+VV V
Sbjct: 4   VVVHQESTKMILNGSQIHLEMLKEW-DGFKKGEVVRV 39

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	422
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	100.0
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	100.0
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	99.55
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	99.42
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	99.33
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.33
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	99.3
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	99.29
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.24
d2apoa1	85	Pseudouridine synthase II TruB, C-terminal domain	99.21
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.2
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.16
d1iq8a3	77	Archaeosine tRNA-guanine transglycosylase, C3 doma	99.16
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.15
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	99.13
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.11
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	99.11
d2ey4a1	84	Pseudouridine synthase II TruB, C-terminal domain	99.1
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	99.1
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	99.07
d1q7ha1	85	Hypothetical protein Ta1423, C-terminal domain {Ar	99.05
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.04
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.03
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	99.0
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	98.98
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	98.95
d1r3ea1	81	Pseudouridine synthase II TruB, C-terminal domain	98.94
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.9
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	98.89
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.87
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	98.87
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.85
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	98.82
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.81
d2cx1a1	93	Hypothetical protein APE0525, C-terminal domain {A	98.81
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	98.8
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	98.69
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	98.67
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	98.65
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	98.64
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	98.63
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	98.62
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	98.62
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	98.59
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.58
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	98.58
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	98.57
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	98.55
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	98.53
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	98.53
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	98.52
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	98.49
d2q07a1	68	Uncharacterized protein AF0587 {Archaeoglobus fulg	98.47
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	98.44
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	98.43
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	98.4
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	98.39
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	98.39
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	98.36
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	98.3
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.28
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	98.25
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.25
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.22
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.21
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	98.19
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.18
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.12
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.09
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	98.08
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	98.04
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	98.03
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	97.97
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.95
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	97.85
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.83
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	97.82
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	97.81
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	97.79
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.78
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.76
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.72
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	97.65
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	97.61
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	97.49
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	97.49
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	97.37
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	97.17
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	97.17
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.16
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	97.01
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	96.95
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	96.9
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	96.87
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	96.79
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	96.46
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	96.17
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	96.15
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	96.1
d2as0a1	72	Hypothetical protein PH1915, N-terminal domain {Ar	95.63
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	95.56
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	95.55
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	95.29
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	95.24
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	95.03
d2c7pa1	327	DNA methylase HhaI {Haemophilus haemolyticus [TaxI	94.96
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	94.66
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	94.51
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	94.34
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	94.29
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	94.13
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	93.79
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	93.05
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.79
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	91.79
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	91.75
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	91.37
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	91.33
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	91.16
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	90.66
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	90.5
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	90.43
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	90.23
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	89.81
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	89.78
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	88.65
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	88.01
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.71
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	85.62
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	85.04
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	84.58
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	81.87

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=5.9e-43  Score=345.43  Aligned_cols=230  Identities=24%  Similarity=0.354  Sum_probs=186.6

Q ss_pred             cccCHHHHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccc
Q 014571           13 LRWNPQVEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTIS   92 (422)
Q Consensus        13 ~~~~~~v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (422)
                      +++++-+.+.+.+.||+ ..+++++++.+||.. |+||||+|+|+++++++|.+.         |             +.
T Consensus        12 ~~~p~wl~~~~~~~~Ge-e~~~l~~a~~~~~p~-~iRvN~~k~~~e~~~~~L~~~---------g-------------~~   67 (313)
T d1ixka_          12 LGYSKLFADRYFQLWGE-RAIRIAEAMEKPLPR-CFRVNTLKISVQDLVKRLNKK---------G-------------FQ   67 (313)
T ss_dssp             TTCCHHHHHHHHHHHTT-HHHHHHHHTTSCCCC-EEEECTTTSCHHHHHHHHHHT---------T-------------CE
T ss_pred             cCCCHHHHHHHHHHhhH-HHHHHHHHcCCCCCe-EEEEcCCcCCHHHHHHHHHhC---------C-------------Cc
Confidence            46788999999999995 589999999998755 899999999999999998754         3             33


Q ss_pred             cccCCCCCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCC
Q 014571           93 ESQIPGLEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLD  172 (422)
Q Consensus        93 ~~~~~~l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~  172 (422)
                      ..++|++++.+.+... +                                                              
T Consensus        68 ~~~~~~~~~~~~~~~~-~--------------------------------------------------------------   84 (313)
T d1ixka_          68 FKRVPWAKEGFCLTRE-P--------------------------------------------------------------   84 (313)
T ss_dssp             EEEETTEEEEEEEEEC-S--------------------------------------------------------------
T ss_pred             eEECCCCcchhhhccC-C--------------------------------------------------------------
Confidence            3444444444333110 0                                                              


Q ss_pred             CCchhhhhhhcccCCCCCCCcccCCCceEEEEccCccCHHHHhcccCcceeeccccccCCCCccccccceEEEeChhHHH
Q 014571          173 GGWGLGITRGTVLQGSQTDPYYFERSGLYIGQGTAMMSRAGIFRASEGIAVDMHNRIFQLPSFYDVLEGEIFLQNLPSIV  252 (422)
Q Consensus       173 p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg~a~msreel~~~~~GiaV~~~~~~~~~p~~~~~~~G~~~~Qd~~S~l  252 (422)
                                                                            .++..+|.|   ++|++++||.+||+
T Consensus        85 ------------------------------------------------------~~l~~~~~~---~~G~~~vQD~aS~l  107 (313)
T d1ixka_          85 ------------------------------------------------------FSITSTPEF---LTGLIYIQEASSMY  107 (313)
T ss_dssp             ------------------------------------------------------SCGGGSHHH---HTTSEEECCHHHHH
T ss_pred             ------------------------------------------------------CccccCHhh---hhceEEEecccccc
Confidence                                                                  011233333   68999999999999


Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      ++.+|+|+||++||||||||||||+||++++.++|.|+|+|++++|++.++++++|+|+.|+.++..|++....      
T Consensus       108 ~~~~l~~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~~~~i~~~~~d~~~~~~------  181 (313)
T d1ixka_         108 PPVALDPKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLGVLNVILFHSSSLHIGE------  181 (313)
T ss_dssp             HHHHHCCCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHTCCSEEEESSCGGGGGG------
T ss_pred             hhhcccCCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHHhhcccccccccccccc------
Confidence            99999999999999999999999999999999999999999999999999999999999999999999887532      


Q ss_pred             CCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                               ....||+||+||||||+|+   +||+|+..++|++...  .+++.+|++||.+|+. ++.+|.|||
T Consensus       182 ---------~~~~fD~ILvDaPCSg~G~---~~r~p~~~~~~~~~~~--~~l~~~Q~~iL~~a~~~lk~gG~lVY  242 (313)
T d1ixka_         182 ---------LNVEFDKILLDAPCTGSGT---IHKNPERKWNRTMDDI--KFCQGLQMRLLEKGLEVLKPGGILVY  242 (313)
T ss_dssp             ---------GCCCEEEEEEECCTTSTTT---CC--------CCHHHH--HHHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred             ---------ccccccEEEEccccccCCc---eeeccchhhhhhhhHH--HHHHHHHHHHHHhhhheeCCCcEEEE
Confidence                     1356999999999999999   9999999988887655  6899999999999987 799999999

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=6.4e-43  Score=340.78  Aligned_cols=212  Identities=21%  Similarity=0.250  Sum_probs=180.1

Q ss_pred             CCCchhhhhhhcccCC-CCCCCcccCCCceEEEEccCccCHHHHhc--cc------------CcceeeccccccCCCCcc
Q 014571          172 DGGWGLGITRGTVLQG-SQTDPYYFERSGLYIGQGTAMMSRAGIFR--AS------------EGIAVDMHNRIFQLPSFY  236 (422)
Q Consensus       172 ~p~W~~~~~r~~~~~~-~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~------------~GiaV~~~~~~~~~p~~~  236 (422)
                      ||.|+++.++..+... ..+.+++++++++++|+|..+.+++++.+  ..            .++.+....++..+|.| 
T Consensus         1 HP~WLv~~~~~~~gee~~~l~~a~~~~~p~~lRvN~~k~s~~~~~~~L~~~gi~~~~~~~~p~~l~l~~~~~l~~~~~~-   79 (284)
T d1sqga2           1 HPSWLLKRLQKAYPEQWQSIVEANNQRPPMWLRINRTHHSRDSWLALLDEAGMKGFPHADYPDAVRLETPAPVHALPGF-   79 (284)
T ss_dssp             SCHHHHHHHHHHCTTTHHHHHHHHTSCCCEEEEECTTTCCHHHHHHHHHHTTCCEECCTTCTTEEEESSCCCGGGSTTG-
T ss_pred             CcHHHHHHHHHHCHHHHHHHHHHCCCCCCeEEEECCCCCCHHHHHHHHHhcCCceeecCCCCccceeccccchhhChhh-
Confidence            7999999999887532 24667889999999999999999998775  23            33444444445566665 


Q ss_pred             ccccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEE
Q 014571          237 DVLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT  316 (422)
Q Consensus       237 ~~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~  316 (422)
                        ++|++++||++||+++.+|++++|++||||||||||||+|||+++.+ |.|+|+|++++|++.++++++|+|++++.+
T Consensus        80 --~~G~~~vQD~sS~l~~~~L~~~~g~~vLD~CAaPGgKt~~la~l~~~-~~i~a~d~~~~R~~~l~~~~~r~g~~~~~~  156 (284)
T d1sqga2          80 --EDGWVTVQDASAQGCMTWLAPQNGEHILDLCAAPGGKTTHILEVAPE-AQVVAVDIDEQRLSRVYDNLKRLGMKATVK  156 (284)
T ss_dssp             --GGTSEEECCHHHHTHHHHHCCCTTCEEEEESCTTCHHHHHHHHHCTT-CEEEEEESSTTTHHHHHHHHHHTTCCCEEE
T ss_pred             --hccEEEeccccccccccccCccccceeEeccCccccchhhhhhhhhh-hhhhhhhcchhhhhhHhhhhhcccccceee
Confidence              69999999999999999999999999999999999999999998764 999999999999999999999999998887


Q ss_pred             EecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhc
Q 014571          317 YKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVV  396 (422)
Q Consensus       317 ~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~  396 (422)
                      ...|.......              ....||+||+||||||+|+   +||+|+.+++|++...  .+++.+|++||++|+
T Consensus       157 ~~~~~~~~~~~--------------~~~~fd~IL~DaPCSg~G~---~rr~p~~~~~~~~~~~--~~l~~lQ~~iL~~a~  217 (284)
T d1sqga2         157 QGDGRYPSQWC--------------GEQQFDRILLDAPCSATGV---IRRHPDIKWLRRDRDI--PELAQLQSEILDAIW  217 (284)
T ss_dssp             ECCTTCTHHHH--------------TTCCEEEEEEECCCCCGGG---TTTCTTHHHHCCTTHH--HHHHHHHHHHHHHHG
T ss_pred             eccccccchhc--------------ccccccEEEEeccccccCc---cccccchhhccccchh--hHHHHHHHHHHHHHH
Confidence            77665433211              1356999999999999999   9999999988887655  689999999999998


Q ss_pred             c-ceeccEEEe
Q 014571          397 G-LRIQKVLVL  406 (422)
Q Consensus       397 ~-lr~~~~~~~  406 (422)
                      . ++.+|+|||
T Consensus       218 ~~lk~gG~lvY  228 (284)
T d1sqga2         218 PHLKTGGTLVY  228 (284)
T ss_dssp             GGEEEEEEEEE
T ss_pred             HhcCCCceEEE
Confidence            7 799999999

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-38  Score=312.28  Aligned_cols=191  Identities=19%  Similarity=0.279  Sum_probs=148.2

Q ss_pred             ceEEEEccCccCHHHHhc--ccCcceeecc------------------------------ccccCCCCccccccceEEEe
Q 014571          199 GLYIGQGTAMMSRAGIFR--ASEGIAVDMH------------------------------NRIFQLPSFYDVLEGEIFLQ  246 (422)
Q Consensus       199 ~v~Vrvg~a~msreel~~--~~~GiaV~~~------------------------------~~~~~~p~~~~~~~G~~~~Q  246 (422)
                      |+|+|+|+.+.+++++.+  ...|+.++..                              .++..+|.   |++|++++|
T Consensus         3 P~~~RVNtlk~~~ee~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~~~~~---~~~G~~~~Q   79 (293)
T d2b9ea1           3 PRFVRVNTLKTCSDDVVDYFKRQGFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLHEHPL---YRAGHLILQ   79 (293)
T ss_dssp             CEEEEECTTTCCHHHHHHHHHHTTCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCTTSHH---HHTTSEEEC
T ss_pred             CeEEEECCCcCCHHHHHHHHHHcCCccccccccchhhhhcccccccccCCCCCeEEeCCCCCcccChH---HhCcEEEEc
Confidence            679999999999999876  3455544322                              22233333   479999999


Q ss_pred             ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571          247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR  326 (422)
Q Consensus       247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~  326 (422)
                      |.+||+++++|+|++|++||||||||||||+|||++++++++|+|+|++++|++.++++++|+|++|+.+...|++....
T Consensus        80 D~sS~l~~~~L~~~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~r~g~~~~~~~~~d~~~~~~  159 (293)
T d2b9ea1          80 DRASCLPAMLLDPPPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLARAGVSCCELAEEDFLAVSP  159 (293)
T ss_dssp             CTGGGHHHHHHCCCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCGGGSCT
T ss_pred             CCcccccccccCCCccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHHhcCccceeeeehhhhhhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999887542


Q ss_pred             ccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhccceeccEEEe
Q 014571          327 RKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLVL  406 (422)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~lr~~~~~~~  406 (422)
                      ..            ...+.||+||+||||||+|+   +||+|+.++.|++....+..++.+|++||.+|..++.+|.|||
T Consensus       160 ~~------------~~~~~fD~VL~DaPCSg~G~---~~r~p~~~~~~~~~~~~~~~l~~~Q~~il~~a~~l~~gG~lvY  224 (293)
T d2b9ea1         160 SD------------PRYHEVHYILLDPSCSGSGM---PSRQLEEPGAGTPSPVRLHALAGFQQRALCHALTFPSLQRLVY  224 (293)
T ss_dssp             TC------------GGGTTEEEEEECCCCCC---------------------CCHHHHHHHHHHHHHHHTTCTTCCEEEE
T ss_pred             cc------------cccceeeEEeecCcccchhh---hcccchhhccCCcchhhHHHHhhhhHHhHHHhhhcccccEEEE
Confidence            11            12356999999999999999   9999999988887776567899999999999999999999999


Q ss_pred             h
Q 014571          407 T  407 (422)
Q Consensus       407 t  407 (422)
                      +
T Consensus       225 s  225 (293)
T d2b9ea1         225 S  225 (293)
T ss_dssp             E
T ss_pred             e
Confidence            4

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=99.55  E-value=2.4e-15  Score=147.01  Aligned_cols=132  Identities=23%  Similarity=0.246  Sum_probs=105.0

Q ss_pred             ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEe
Q 014571          239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYK  318 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~  318 (422)
                      +.|.|+-|-....    ++....|.+|||+|||+|++|.++|..   ..+|+++|+|+.+++.+++|+++.|+.++++++
T Consensus       127 ~tG~flDqr~~r~----~~~~~~g~rVLDl~~gtG~~s~~~a~g---~~~V~~vD~s~~al~~a~~n~~~ngl~~~~~i~  199 (318)
T d1wxxa2         127 KTGAYLDQRENRL----YMERFRGERALDVFSYAGGFALHLALG---FREVVAVDSSAEALRRAEENARLNGLGNVRVLE  199 (318)
T ss_dssp             CCCCCGGGHHHHH----HGGGCCEEEEEEETCTTTHHHHHHHHH---EEEEEEEESCHHHHHHHHHHHHHTTCTTEEEEE
T ss_pred             ccccchhhhhhHH----HHHHhCCCeeeccCCCCcHHHHHHHhc---CCcEEeecchHHHHHHHHHHHHHcCCCCcceee
Confidence            5676666654432    334457999999999999999998853   469999999999999999999999999999999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-  397 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-  397 (422)
                      +|+.++.....           .....||.|++||||++.+.                  ..+......|.+|+..+.. 
T Consensus       200 ~d~~~~~~~~~-----------~~~~~fD~Vi~DpP~~~~~~------------------~~~~~~~~~~~~l~~~a~~l  250 (318)
T d1wxxa2         200 ANAFDLLRRLE-----------KEGERFDLVVLDPPAFAKGK------------------KDVERAYRAYKEVNLRAIKL  250 (318)
T ss_dssp             SCHHHHHHHHH-----------HTTCCEEEEEECCCCSCCST------------------TSHHHHHHHHHHHHHHHHHT
T ss_pred             ccHHHHhhhhH-----------hhhcCCCEEEEcCCccccch------------------HHHHHHHHHHHHHHHHHHHH
Confidence            99987654321           12457999999999998765                  0123566688999998876 


Q ss_pred             ceeccEEEe
Q 014571          398 LRIQKVLVL  406 (422)
Q Consensus       398 lr~~~~~~~  406 (422)
                      ++.+|.|++
T Consensus       251 LkpGG~Lv~  259 (318)
T d1wxxa2         251 LKEGGILAT  259 (318)
T ss_dssp             EEEEEEEEE
T ss_pred             cCCCCEEEE
Confidence            799999999

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.42  E-value=2e-13  Score=133.32  Aligned_cols=135  Identities=17%  Similarity=0.150  Sum_probs=105.6

Q ss_pred             ccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEE
Q 014571          239 LEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTY  317 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~  317 (422)
                      +.|.+.-|.....++...  .++|++|||+|||+|++|+++|..  +..+|+++|+++..++.+++|+++.|+ .+++++
T Consensus       125 ~tG~flDqr~~r~~~~~~--~~~g~~VLDl~~g~G~~si~~a~~--ga~~V~~vD~s~~al~~a~~N~~~ngl~~~~~~~  200 (324)
T d2as0a2         125 KTGFFLDQRENRLALEKW--VQPGDRVLDVFTYTGGFAIHAAIA--GADEVIGIDKSPRAIETAKENAKLNGVEDRMKFI  200 (324)
T ss_dssp             SSCCCSTTHHHHHHHGGG--CCTTCEEEETTCTTTHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHTTCGGGEEEE
T ss_pred             ccCcccchhhHHHHHHhh--cCCCCeeecccCcccchhhhhhhc--CCcEEEeecCCHHHHHHHHHHHHHcCCCccceee
Confidence            567776676665665544  478999999999999999999875  345999999999999999999999999 469999


Q ss_pred             ecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc
Q 014571          318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG  397 (422)
Q Consensus       318 ~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~  397 (422)
                      ++|+.+......           ....+||.|++||||.+.+.                  .....-.+.+.+|+..+..
T Consensus       201 ~~d~~~~~~~~~-----------~~~~~fD~Vi~DpP~~~~~~------------------~~~~~~~~~y~~l~~~a~~  251 (324)
T d2as0a2         201 VGSAFEEMEKLQ-----------KKGEKFDIVVLDPPAFVQHE------------------KDLKAGLRAYFNVNFAGLN  251 (324)
T ss_dssp             ESCHHHHHHHHH-----------HTTCCEEEEEECCCCSCSSG------------------GGHHHHHHHHHHHHHHHHT
T ss_pred             echhhhhhHHHH-----------hccCCCCchhcCCccccCCH------------------HHHHHHHHHHHHHHHHHHH
Confidence            999987543211           12457999999999987654                  0112344567889998876


Q ss_pred             -ceeccEEEe
Q 014571          398 -LRIQKVLVL  406 (422)
Q Consensus       398 -lr~~~~~~~  406 (422)
                       ++.+|.|++
T Consensus       252 ll~pGG~lv~  261 (324)
T d2as0a2         252 LVKDGGILVT  261 (324)
T ss_dssp             TEEEEEEEEE
T ss_pred             HcCCCcEEEE
Confidence             899999998

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=99.33  E-value=1.4e-12  Score=127.09  Aligned_cols=136  Identities=9%  Similarity=-0.006  Sum_probs=98.9

Q ss_pred             cccceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC--cceE
Q 014571          238 VLEGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL--KCIT  315 (422)
Q Consensus       238 ~~~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~--~nv~  315 (422)
                      .+.|.|.-|-..-...  +-...+|.+|||+|||+|++|++++..  +..+|+++|+++..++.+++|++..|+  .+++
T Consensus       123 ~ktGlflDqR~~r~~l--~~~~~~g~~VLdlf~~~G~~sl~aa~~--ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~  198 (317)
T d2b78a2         123 LMTGIFLDQRQVRNEL--INGSAAGKTVLNLFSYTAAFSVAAAMG--GAMATTSVDLAKRSRALSLAHFEANHLDMANHQ  198 (317)
T ss_dssp             SCCSSCGGGHHHHHHH--HHTTTBTCEEEEETCTTTHHHHHHHHT--TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEE
T ss_pred             cccCCcHHHHHHHHHH--HHHhhCCCceeecCCCCcHHHHHHHhC--CCceEEEecCCHHHHHHHHHHHHHhcccCcceE
Confidence            3577766554332222  233567999999999999999988764  456899999999999999999999987  4699


Q ss_pred             EEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHh
Q 014571          316 TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALV  395 (422)
Q Consensus       316 ~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a  395 (422)
                      ++++|+.++.....           .....||.|++|||+.+...        ..        .  ....+-+.+|++.+
T Consensus       199 ~i~~d~~~~l~~~~-----------~~~~~fD~Ii~DPP~f~~~~--------~~--------~--~~~~~~~~~L~~~a  249 (317)
T d2b78a2         199 LVVMDVFDYFKYAR-----------RHHLTYDIIIIDPPSFARNK--------KE--------V--FSVSKDYHKLIRQG  249 (317)
T ss_dssp             EEESCHHHHHHHHH-----------HTTCCEEEEEECCCCC-------------C--------C--CCHHHHHHHHHHHH
T ss_pred             EEEccHHHHHHHHH-----------hhcCCCCEEEEcChhhccch--------hH--------H--HHHHHHHHHHHHHH
Confidence            99999987654321           11457999999999765322        11        1  13445677888888


Q ss_pred             cc-ceeccEEEe
Q 014571          396 VG-LRIQKVLVL  406 (422)
Q Consensus       396 ~~-lr~~~~~~~  406 (422)
                      .. ++.+|.|++
T Consensus       250 ~~ll~pgG~l~~  261 (317)
T d2b78a2         250 LEILSENGLIIA  261 (317)
T ss_dssp             HHTEEEEEEEEE
T ss_pred             HHHcCCCCEEEE
Confidence            66 799999998

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.33  E-value=3.2e-12  Score=121.58  Aligned_cols=99  Identities=13%  Similarity=0.143  Sum_probs=83.6

Q ss_pred             eEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC---CcceEEEe
Q 014571          242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG---LKCITTYK  318 (422)
Q Consensus       242 ~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g---~~nv~~~~  318 (422)
                      -+|..|.+  ++...|+++||++|||++||+|..|.+||..+++.|+|+++|+++.+++.+++|+++++   ..|+.+.+
T Consensus        79 iiypkD~s--~Ii~~l~i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv~~~~  156 (264)
T d1i9ga_          79 VIYPKDAA--QIVHEGDIFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVV  156 (264)
T ss_dssp             CCCHHHHH--HHHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEEC
T ss_pred             ccchHHHH--HHHHHhCCCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceEEEEe
Confidence            35666654  67789999999999999999999999999999999999999999999999999999863   47899999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccc
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                      +|......               ..+.||.|++|.|+--
T Consensus       157 ~d~~~~~~---------------~~~~fDaV~ldlp~P~  180 (264)
T d1i9ga_         157 SDLADSEL---------------PDGSVDRAVLDMLAPW  180 (264)
T ss_dssp             SCGGGCCC---------------CTTCEEEEEEESSCGG
T ss_pred             cccccccc---------------cCCCcceEEEecCCHH
Confidence            99875321               1356999999977543

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=9.1e-13  Score=129.32  Aligned_cols=142  Identities=22%  Similarity=0.222  Sum_probs=106.2

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      +..++++.++++|||++||.|..|+.||+.   ..+|+|+|.++..++.+++|++..|++|+.++.+|..+......   
T Consensus       204 v~~~~~~~~~~~vlDLycG~G~fsl~La~~---~~~V~gvE~~~~ai~~A~~na~~n~i~n~~~~~~~~~~~~~~~~---  277 (358)
T d1uwva2         204 ALEWLDVQPEDRVLDLFCGMGNFTLPLATQ---AASVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQP---  277 (358)
T ss_dssp             HHHHHTCCTTCEEEEESCTTTTTHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCTTSCCSSSG---
T ss_pred             HHHhhccCCCceEEEecccccccchhcccc---ccEEEeccCcHHHHHHHHHhHHhcccccceeeecchhhhhhhhh---
Confidence            556678999999999999999999999986   46999999999999999999999999999999998876432110   


Q ss_pred             CCccccCCCCCCCCCceeecCCccccCch-hhhhhCCCCCccccccCcccchhHH-HH-HHHHHH-hccceeccEEEe--
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHKEVP-SIAAEGLNGDKSCKEKGRTCGECGM-AQ-EEINAL-VVGLRIQKVLVL--  406 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G~l-~~lrr~p~~~~~w~~~~~~~~~l~~-~Q-~~IL~~-a~~lr~~~~~~~--  406 (422)
                              .....||.|++|||++|.+.. ..+.+       ..+...-+.+|.+ ++ |++-.- ..|+++..+-.+  
T Consensus       278 --------~~~~~~d~vilDPPR~G~~~~~~~l~~-------~~~~~ivYVSCnp~TlaRDl~~l~~~gy~l~~i~~~D~  342 (358)
T d1uwva2         278 --------WAKNGFDKVLLDPARAGAAGVMQQIIK-------LEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDM  342 (358)
T ss_dssp             --------GGTTCCSEEEECCCTTCCHHHHHHHHH-------HCCSEEEEEESCHHHHHHHHHHHHHTTCEEEEEEEECC
T ss_pred             --------hhhccCceEEeCCCCccHHHHHHHHHH-------cCCCEEEEEeCCHHHHHHHHHHHHHCCCeEeEEEEEec
Confidence                    124568999999999997652 33333       2233333444443 33 443322 357999888888  


Q ss_pred             ---hhhHHHHHh
Q 014571          407 ---TALIESFLM  415 (422)
Q Consensus       407 ---t~~~~~~~~  415 (422)
                         |.|+|+.-.
T Consensus       343 FP~T~HvE~v~~  354 (358)
T d1uwva2         343 FPHTGHLESMVL  354 (358)
T ss_dssp             STTSSCCEEEEE
T ss_pred             CCCCccEEEEEE
Confidence               999998543

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=99.29  E-value=9.8e-12  Score=118.18  Aligned_cols=129  Identities=18%  Similarity=0.254  Sum_probs=94.9

Q ss_pred             cCHHHHhcccCcceeecccc--cc-CCCCcccc----c--cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHH
Q 014571          209 MSRAGIFRASEGIAVDMHNR--IF-QLPSFYDV----L--EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAI  279 (422)
Q Consensus       209 msreel~~~~~GiaV~~~~~--~~-~~p~~~~~----~--~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~l  279 (422)
                      ..-+++...+.|-.++.+..  .+ ..|.+.++    +  .--+|..|.  .+++..|+++||++|||+|||+|+.|.++
T Consensus        44 ~~~~~iig~~~G~~v~~~~g~~~~~~~p~~~d~~~~~~r~~qiiypkd~--~~Ii~~l~i~pG~~VLDiG~GsG~lt~~l  121 (266)
T d1o54a_          44 IDLNEVFEKGPGEIIRTSAGKKGYILIPSLIDEIMNMKRRTQIVYPKDS--SFIAMMLDVKEGDRIIDTGVGSGAMCAVL  121 (266)
T ss_dssp             EEHHHHTTSCTTCEEECTTCCEEEEECCCHHHHHHTCCC-CCCCCHHHH--HHHHHHTTCCTTCEEEEECCTTSHHHHHH
T ss_pred             EeHHHhcCCCCCeEEEecCCCeEEEECCCHHHHHhhccCCccccchHHH--HHHHHhhCCCCCCEEEECCCCCCHHHHHH
Confidence            34566665566655554321  11 12333322    2  234566654  46788999999999999999999999999


Q ss_pred             HhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          280 ASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       280 a~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      |+.+++.|+|+++|+++.+++.+++|++++|+ .++.+...|.....                ....||.|++|.|.
T Consensus       122 A~~~~~~G~V~~vD~~~~~~~~A~~~~~~~g~~~~v~~~~~d~~~~~----------------~~~~~D~V~~d~p~  182 (266)
T d1o54a_         122 ARAVGSSGKVFAYEKREEFAKLAESNLTKWGLIERVTIKVRDISEGF----------------DEKDVDALFLDVPD  182 (266)
T ss_dssp             HHHTTTTCEEEEECCCHHHHHHHHHHHHHTTCGGGEEEECCCGGGCC----------------SCCSEEEEEECCSC
T ss_pred             HHHhCCCcEEEEEeCCHHHHHHHHHHHHHhccccCcEEEeccccccc----------------cccceeeeEecCCC
Confidence            99999999999999999999999999999998 66888877753311                13458999998774

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.24  E-value=1.2e-11  Score=115.09  Aligned_cols=88  Identities=15%  Similarity=0.179  Sum_probs=73.2

Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCc
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      .+.++||++|||+|||+|+.|.|+|+.++++|+|+|+|+++.+++.+++++++.  .|+..+..|++......       
T Consensus        68 ~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~~~--~~~~~i~~d~~~~~~~~-------  138 (227)
T d1g8aa_          68 NFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVEER--RNIVPILGDATKPEEYR-------  138 (227)
T ss_dssp             CCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHSSC--TTEEEEECCTTCGGGGT-------
T ss_pred             ccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHHhc--CCceEEEEECCCccccc-------
Confidence            346899999999999999999999999999999999999999999999988765  56888888887643211       


Q ss_pred             cccCCCCCCCCCceeecCCccc
Q 014571          336 NMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                           .....+|.|++|.+|..
T Consensus       139 -----~~~~~vD~i~~d~~~~~  155 (227)
T d1g8aa_         139 -----ALVPKVDVIFEDVAQPT  155 (227)
T ss_dssp             -----TTCCCEEEEEECCCSTT
T ss_pred             -----ccccceEEEEEEccccc
Confidence                 11345899999988864

>d2apoa1 b.122.1.1 (A:247-331) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Pseudouridine synthase II TruB, C-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.21  E-value=8.3e-12  Score=98.90  Aligned_cols=73  Identities=34%  Similarity=0.552  Sum_probs=67.0

Q ss_pred             CCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceE
Q 014571          122 PPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLY  201 (422)
Q Consensus       122 ~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~  201 (422)
                      |.|.|+||++|++|+++||++|+|||++++++|++||.|.|.                                ..++.+
T Consensus         1 hlp~v~Vd~~Av~ai~~Ga~L~~pGV~~~~~~~~~Gd~V~V~--------------------------------~~~g~~   48 (85)
T d2apoa1           1 HLKKVVVKDSAVDAICHGADVYVRGIAKLSKGIGKGETVLVE--------------------------------TLKGEA   48 (85)
T ss_dssp             TSEEEEECHHHHHHHHTTCCEEGGGEEEEETTCCTTCEEEEE--------------------------------CTTSCE
T ss_pred             CCCEEEECccHHHHHHcCCCccccEEEEEcCCCcCCCEEEEE--------------------------------eCCCCE
Confidence            457899999999999999999999999999999999999998                                345678


Q ss_pred             EEEccCccCHHHHhcccCcceeecc
Q 014571          202 IGQGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       202 Vrvg~a~msreel~~~~~GiaV~~~  226 (422)
                      |++|.+.++++|+.+..+|+++++.
T Consensus        49 iavG~~~~ss~ei~~~~~G~av~~~   73 (85)
T d2apoa1          49 VAVGKALMNTKEILNADKGVAVDVE   73 (85)
T ss_dssp             EEEEEESSCHHHHHHCSSSEEEEEE
T ss_pred             EEEEEEeeCHHHHhhcCCCEEEEEE
Confidence            9999999999999989999999864

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.20  E-value=1.3e-11  Score=116.45  Aligned_cols=99  Identities=14%  Similarity=0.149  Sum_probs=74.2

Q ss_pred             cceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-CcceEEEe
Q 014571          240 EGEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-LKCITTYK  318 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-~~nv~~~~  318 (422)
                      ..-+|..|.+.  +...++++||++|||++||+|..|..+|+.+++.|+|+++|+++.+++.+++|+++++ ..|+++..
T Consensus        66 ~qiiypkD~~~--Ii~~l~i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~~~~~nv~~~~  143 (250)
T d1yb2a1          66 TQIISEIDASY--IIMRCGLRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEFYDIGNVRTSR  143 (250)
T ss_dssp             -----------------CCCCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTTSCCTTEEEEC
T ss_pred             CcccCHHHHHH--HHHHcCCCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhcCCCceEEEE
Confidence            34478888764  3467999999999999999999999999999999999999999999999999999974 68899999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      +|.....                ....||.|++|.|..
T Consensus       144 ~Di~~~~----------------~~~~fD~V~ld~p~p  165 (250)
T d1yb2a1         144 SDIADFI----------------SDQMYDAVIADIPDP  165 (250)
T ss_dssp             SCTTTCC----------------CSCCEEEEEECCSCG
T ss_pred             eeeeccc----------------ccceeeeeeecCCch
Confidence            9976431                134689999997743

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.16  E-value=5.4e-11  Score=109.07  Aligned_cols=86  Identities=15%  Similarity=0.176  Sum_probs=76.1

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      ....|+++||++|||+|||+|..|..+|+.+++.|+|+++|+++.+++.+++++++.++.|+.++++|+.....      
T Consensus        67 ~l~~l~l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~~~n~~~~~~d~~~~~~------  140 (213)
T d1dl5a1          67 FMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLGIENVIFVCGDGYYGVP------  140 (213)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTTCCSEEEEESCGGGCCG------
T ss_pred             HHHhhhccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhcccccccccCchHHccc------
Confidence            35678899999999999999999999999998899999999999999999999999999999999999875322      


Q ss_pred             CCccccCCCCCCCCCceeecC
Q 014571          333 DEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDa  353 (422)
                               ..+.||+|++++
T Consensus       141 ---------~~~~fD~I~~~~  152 (213)
T d1dl5a1         141 ---------EFSPYDVIFVTV  152 (213)
T ss_dssp             ---------GGCCEEEEEECS
T ss_pred             ---------cccchhhhhhhc
Confidence                     135699999854

>d1iq8a3 b.122.1.1 (A:506-582) Archaeosine tRNA-guanine transglycosylase, C3 domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Archaeosine tRNA-guanine transglycosylase, C3 domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.16  E-value=3.1e-11  Score=93.76  Aligned_cols=72  Identities=19%  Similarity=0.276  Sum_probs=66.3

Q ss_pred             CEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEE
Q 014571          124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIG  203 (422)
Q Consensus       124 k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vr  203 (422)
                      ..|+||++|++++++||++|+|||+.++.+++.||.|.|+                                ...+..|+
T Consensus         3 ~rV~Vd~gA~~~v~~Ga~l~~~GV~~~~~~~~~Gd~V~I~--------------------------------~~~g~~ia   50 (77)
T d1iq8a3           3 MRVVVNKEAEPFARKGKDVFAKFVIFADPGIRPYDEVLVV--------------------------------NENDELLA   50 (77)
T ss_dssp             TEEEECTTTHHHHHTTCCEEGGGEEEECTTCCTTCEEEEE--------------------------------CTTCCEEE
T ss_pred             EEEEECcchHHHHHhcCCcccCeEEEEcCCCCCCCEEEEE--------------------------------ECCCcEEE
Confidence            4699999999999999999999999999999999999998                                34567899


Q ss_pred             EccCccCHHHHhcccCcceeeccc
Q 014571          204 QGTAMMSRAGIFRASEGIAVDMHN  227 (422)
Q Consensus       204 vg~a~msreel~~~~~GiaV~~~~  227 (422)
                      +|.+.++.+++.+..+|++++...
T Consensus        51 vG~a~~ss~ei~~~~kG~avk~r~   74 (77)
T d1iq8a3          51 TGQALLSGREMIVFQYGRAVKVRK   74 (77)
T ss_dssp             EEEESSCHHHHHHCCSSEEEEEEE
T ss_pred             EEEEecCHHHHHhcCCcEEEEecC
Confidence            999999999999999999998754

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.15  E-value=6.2e-11  Score=105.89  Aligned_cols=88  Identities=20%  Similarity=0.255  Sum_probs=74.8

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKA  324 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~  324 (422)
                      ++.-+++.. .++|++|++|||+|||+|..|.++|..   .++|+|+|+++.+++.+++|++++|+ +||+++++|+...
T Consensus        19 ~eir~~il~-~l~~~~g~~VLDiGcGsG~~s~~lA~~---~~~V~avD~~~~~l~~a~~n~~~~gl~~~v~~~~gda~~~   94 (186)
T d1l3ia_          19 MEVRCLIMC-LAEPGKNDVAVDVGCGTGGVTLELAGR---VRRVYAIDRNPEAISTTEMNLQRHGLGDNVTLMEGDAPEA   94 (186)
T ss_dssp             HHHHHHHHH-HHCCCTTCEEEEESCTTSHHHHHHHTT---SSEEEEEESCHHHHHHHHHHHHHTTCCTTEEEEESCHHHH
T ss_pred             HHHHHHHHH-hcCCCCCCEEEEEECCeEccccccccc---ceEEEEecCCHHHHHHHHHHHHHcCCCcceEEEECchhhc
Confidence            455556555 579999999999999999999999875   36899999999999999999999998 5899999999876


Q ss_pred             hhccCCCCCCccccCCCCCCCCCceeec
Q 014571          325 VRRKNESNDEPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvD  352 (422)
                      ...               ...||.|+++
T Consensus        95 ~~~---------------~~~~D~v~~~  107 (186)
T d1l3ia_          95 LCK---------------IPDIDIAVVG  107 (186)
T ss_dssp             HTT---------------SCCEEEEEES
T ss_pred             ccc---------------cCCcCEEEEe
Confidence            531               2458999985

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.13  E-value=4.5e-11  Score=115.79  Aligned_cols=108  Identities=19%  Similarity=0.140  Sum_probs=86.1

Q ss_pred             ccceEEEeChhHHHHHHhc-CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc--ceE
Q 014571          239 LEGEIFLQNLPSIVTAHAL-DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK--CIT  315 (422)
Q Consensus       239 ~~G~~~~Qd~~S~lv~~~L-~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~--nv~  315 (422)
                      +.|.|.=|-..-.++...+ ....|.+|||+|||+|+.++++|..   .++|+++|.|+..++.+++|++..|+.  +++
T Consensus       109 ~tG~f~dqr~nr~~~~~~~~~~~~~~rVLdlf~~tG~~sl~aa~~---GA~V~~VD~s~~al~~a~~N~~ln~~~~~~~~  185 (309)
T d2igta1         109 HVGVFPEQIVHWEWLKNAVETADRPLKVLNLFGYTGVASLVAAAA---GAEVTHVDASKKAIGWAKENQVLAGLEQAPIR  185 (309)
T ss_dssp             CCSCCGGGHHHHHHHHHHHHHSSSCCEEEEETCTTCHHHHHHHHT---TCEEEEECSCHHHHHHHHHHHHHHTCTTSCEE
T ss_pred             ccccccchhHHHHHHHHHHhhccCCCeEEEecCCCcHHHHHHHhC---CCeEEEEeChHHHHHHHHHhhhhhcccCCcEE
Confidence            5677766766655555444 3457889999999999999998875   358999999999999999999999985  499


Q ss_pred             EEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571          316 TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       316 ~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      +++.|+.++.....           .....||.|++|||+-+.+.
T Consensus       186 ~i~~D~~~~l~~~~-----------~~~~~fD~IilDPP~f~~~~  219 (309)
T d2igta1         186 WICEDAMKFIQREE-----------RRGSTYDIILTDPPKFGRGT  219 (309)
T ss_dssp             EECSCHHHHHHHHH-----------HHTCCBSEEEECCCSEEECT
T ss_pred             EEeCCHHHhHHHHh-----------hcCCCCCEEEECCCcccccc
Confidence            99999988764321           11457999999999987765

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.11  E-value=7.1e-11  Score=108.17  Aligned_cols=69  Identities=29%  Similarity=0.379  Sum_probs=61.5

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR  326 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~  326 (422)
                      .-+.++||++|||+|||+|+.+.|+|+.++ .|+|+|+|+++.+++.+++++++.  +|+.++.+|+.....
T Consensus        50 ~~l~lkpg~~VLDlGcG~G~~~~~la~~v~-~g~V~gvDis~~~i~~a~~~a~~~--~ni~~i~~d~~~~~~  118 (209)
T d1nt2a_          50 HRLKLRGDERVLYLGAASGTTVSHLADIVD-EGIIYAVEYSAKPFEKLLELVRER--NNIIPLLFDASKPWK  118 (209)
T ss_dssp             CCCCCCSSCEEEEETCTTSHHHHHHHHHTT-TSEEEEECCCHHHHHHHHHHHHHC--SSEEEECSCTTCGGG
T ss_pred             ccCCCCCCCEEEEeCCcCCHHHHHHHHhcc-CCeEEEEeCCHHHHHHHHHHhhcc--CCceEEEeeccCccc
Confidence            446789999999999999999999999985 589999999999999999999886  489999999887543

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.11  E-value=4.3e-11  Score=108.47  Aligned_cols=124  Identities=15%  Similarity=0.126  Sum_probs=94.3

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      +..+|+|++|+.|||+|||+||+|.+|++..+ .++|+|+|+++.+++.+++++++++ .++.+++++..........  
T Consensus        15 vi~~l~~~~~~~~lD~t~G~Gghs~~il~~~~-~~~vi~~D~d~~~l~~a~~~l~~~~-~r~~~~~~~f~~~~~~~~~--   90 (192)
T d1m6ya2          15 VIEFLKPEDEKIILDCTVGEGGHSRAILEHCP-GCRIIGIDVDSEVLRIAEEKLKEFS-DRVSLFKVSYREADFLLKT--   90 (192)
T ss_dssp             HHHHHCCCTTCEEEETTCTTSHHHHHHHHHCT-TCEEEEEESCHHHHHHHHHHTGGGT-TTEEEEECCGGGHHHHHHH--
T ss_pred             HHHhhCCCCCCEEEEecCCCcHHHHHHHhcCC-CCeEEEeechHHHHHHHHHhhcccc-ccccchhHHHhhHHHHHHH--
Confidence            56788999999999999999999999999984 6999999999999999999999987 4689999887665332110  


Q ss_pred             CCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                              ...+.||.||.|-+||+.-.     ..+          .  +.+. .+.+.|..+.. ++.+|.++.
T Consensus        91 --------~~~~~vdgIl~DlGvSs~Ql-----d~~----------~--r~~~-~~~~~L~~a~~~Lk~gG~l~i  139 (192)
T d1m6ya2          91 --------LGIEKVDGILMDLGVSTYQL-----KGE----------N--RELE-NLKEFLKKAEDLLNPGGRIVV  139 (192)
T ss_dssp             --------TTCSCEEEEEEECSCCHHHH-----HTS----------H--THHH-HHHHHHHHGGGGEEEEEEEEE
T ss_pred             --------cCCCCcceeeeccchhHhhh-----hhh----------h--ccch-hHHHHHHHHHHhcCCCCeeee
Confidence                    11357999999999986433     011          1  1233 45566776755 788888866

>d2ey4a1 b.122.1.1 (A:253-336) Pseudouridine synthase II TruB, C-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Pseudouridine synthase II TruB, C-terminal domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=99.10  E-value=4.2e-11  Score=94.52  Aligned_cols=71  Identities=30%  Similarity=0.522  Sum_probs=65.5

Q ss_pred             CEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEE
Q 014571          124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIG  203 (422)
Q Consensus       124 k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vr  203 (422)
                      +.|+||++|++++++||++|+|||++++.+|++||.|.|.                                ...+..|+
T Consensus         2 P~v~Vd~~A~~ai~~Ga~l~~~GV~~~~~~f~~Gd~V~I~--------------------------------~~~g~~ia   49 (84)
T d2ey4a1           2 PKVWIKDSAVAAVTHGADLAVPGIAKLHAGIKRGDLVAIM--------------------------------TLKDELVA   49 (84)
T ss_dssp             CEEEECHHHHHHHTTTCCEEGGGEEEEETTCCTTCEEEEE--------------------------------ETTSCEEE
T ss_pred             CEEEEChhHHHHHHcCCCcCCCeEEEEcCCCCCCCEEEEE--------------------------------eCCCceEE
Confidence            5699999999999999999999999999999999999998                                33567899


Q ss_pred             EccCccCHHHHhcccCcceeecc
Q 014571          204 QGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       204 vg~a~msreel~~~~~GiaV~~~  226 (422)
                      +|++.++++++.+..+|.+++..
T Consensus        50 vG~a~~ss~ei~~~~kG~av~~~   72 (84)
T d2ey4a1          50 LGKAMMTSQEMLEKTKGIAVDVE   72 (84)
T ss_dssp             EEEESSCHHHHHHCCSSEEEEEE
T ss_pred             EEEEeeCHHHHHHhcCCeEEEEE
Confidence            99999999999999999998865

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4e-11  Score=116.97  Aligned_cols=99  Identities=12%  Similarity=0.169  Sum_probs=79.7

Q ss_pred             eEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-----------
Q 014571          242 EIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-----------  310 (422)
Q Consensus       242 ~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-----------  310 (422)
                      -+|..|.+  +++..|+++||++|||++||+|..|.+||..++++|+|+++|+++.+++.+++|+++++           
T Consensus        81 iiypkD~~--~Il~~l~i~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~~~~~  158 (324)
T d2b25a1          81 ITFPKDIN--MILSMMDINPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEW  158 (324)
T ss_dssp             CCCHHHHH--HHHHHHTCCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCC
T ss_pred             ccccccHH--HHHHHhCCCCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhhhhcc
Confidence            37778865  55678999999999999999999999999999999999999999999999999999864           


Q ss_pred             CcceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          311 LKCITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       311 ~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      ..|+.+...|.......             .....||.|++|.|-
T Consensus       159 ~~nv~~~~~di~~~~~~-------------~~~~~fD~V~LD~p~  190 (324)
T d2b25a1         159 PDNVDFIHKDISGATED-------------IKSLTFDAVALDMLN  190 (324)
T ss_dssp             CCCEEEEESCTTCCC--------------------EEEEEECSSS
T ss_pred             ccceeEEecchhhcccc-------------cCCCCcceEeecCcC
Confidence            25788988887643221             113568999998663

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.07  E-value=1.2e-10  Score=110.19  Aligned_cols=85  Identities=15%  Similarity=0.154  Sum_probs=74.7

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .++|++|||+|||+|+.|+++|..  +.++|+|+|+++..++.+++|++..|+.+ |+++++|++.+..           
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~--~~~~V~avd~n~~a~~~~~~N~~~n~l~~~v~~~~~D~~~~~~-----------  171 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVY--GKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSAYNMDNRDFPG-----------  171 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHH--TCCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCTTTCCC-----------
T ss_pred             cCCccEEEECcceEcHHHHHHHHh--CCcEEEEecCCHHHHHHHHHHHHHhCCCceEEEEEcchHHhcc-----------
Confidence            578999999999999999999986  34699999999999999999999999976 9999999986531           


Q ss_pred             cCCCCCCCCCceeecCCccccCch
Q 014571          338 CNSKDNNYITSQTSDSMKLHKEVP  361 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg~G~l  361 (422)
                           .+.||+|+.++|+++...+
T Consensus       172 -----~~~~D~Ii~~~p~~~~~~l  190 (260)
T d2frna1         172 -----ENIADRILMGYVVRTHEFI  190 (260)
T ss_dssp             -----CSCEEEEEECCCSSGGGGH
T ss_pred             -----CCCCCEEEECCCCchHHHH
Confidence                 3568999999999887764

>d1q7ha1 b.122.1.1 (A:69-153) Hypothetical protein Ta1423, C-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Hypothetical protein Ta1423, C-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.05  E-value=1.3e-10  Score=91.77  Aligned_cols=72  Identities=24%  Similarity=0.494  Sum_probs=65.0

Q ss_pred             CCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEE
Q 014571          123 PKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYI  202 (422)
Q Consensus       123 ~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~V  202 (422)
                      ...|+||++|++++++||++|+|||+.++.++++||.|.|+                                ...+.++
T Consensus         2 k~~I~Vd~gA~~~l~~GA~L~~pGV~~~~~~~~~gd~V~I~--------------------------------~~~g~~i   49 (85)
T d1q7ha1           2 RNIVTVDEGAEPHILNGSDLFAPGIVSMDDSIRKGDMIFVK--------------------------------SSKGYFI   49 (85)
T ss_dssp             SSEEEECTTTHHHHTTTCCEEGGGEEEECTTCCTTCEEEEE--------------------------------ETTSCEE
T ss_pred             CCEEEECcCHHHHHHCCCCcCCCccEECCCCCCCCCEEEEE--------------------------------eCCCCEE
Confidence            35799999999999999999999999999999999999998                                2346699


Q ss_pred             EEccCccCHHHHhcccCcceeecc
Q 014571          203 GQGTAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       203 rvg~a~msreel~~~~~GiaV~~~  226 (422)
                      ++|.+.++++++....+|.+++..
T Consensus        50 avG~a~~ss~e~~~~~~G~~v~v~   73 (85)
T d1q7ha1          50 AVGMAEMDAGEVMATKRGKAARII   73 (85)
T ss_dssp             EEEEESSCHHHHHHHCCSEEEEEE
T ss_pred             EEEEEEeCHHHHHhhcCCEEEEEE
Confidence            999999999999988899888754

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.04  E-value=4.2e-10  Score=100.87  Aligned_cols=90  Identities=13%  Similarity=0.092  Sum_probs=78.2

Q ss_pred             ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc--eEEEecchhhh
Q 014571          247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC--ITTYKLDALKA  324 (422)
Q Consensus       247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n--v~~~~~Da~~~  324 (422)
                      |.+|.+.+..+.+.++++|||+|||+|..+.+++...   ..|+++|+|+..++.+++|++..++.+  +++..+|..+.
T Consensus        38 d~~t~lLi~~l~~~~~~~VLDiGcG~G~~~~~la~~~---~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~~  114 (194)
T d1dusa_          38 DKGTKILVENVVVDKDDDILDLGCGYGVIGIALADEV---KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYEN  114 (194)
T ss_dssp             CHHHHHHHHHCCCCTTCEEEEETCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTTT
T ss_pred             CHHHHHHHHhCCcCCCCeEEEEeecCChhHHHHHhhc---cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhhh
Confidence            7889999999999999999999999999999998763   489999999999999999999998865  88888887642


Q ss_pred             hhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          325 VRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      .                ..+.||.|++|+|.
T Consensus       115 ~----------------~~~~fD~Ii~~~p~  129 (194)
T d1dusa_         115 V----------------KDRKYNKIITNPPI  129 (194)
T ss_dssp             C----------------TTSCEEEEEECCCS
T ss_pred             h----------------ccCCceEEEEcccE
Confidence            1                13569999999886

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.03  E-value=3.8e-10  Score=103.45  Aligned_cols=83  Identities=18%  Similarity=0.188  Sum_probs=72.9

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~  330 (422)
                      .+.+..++++||++|||++||+|.-|..+++..   ++|+|+|+|+.+++.++++++..|++|+.++++|+...+..   
T Consensus         6 ~~l~~~~~~~~~~rILDiGcGtG~~~~~la~~~---~~v~gvD~S~~~l~~A~~~~~~~~~~~~~~~~~d~~~~~~~---   79 (234)
T d1xxla_           6 GLMIKTAECRAEHRVLDIGAGAGHTALAFSPYV---QECIGVDATKEMVEVASSFAQEKGVENVRFQQGTAESLPFP---   79 (234)
T ss_dssp             HHHHHHHTCCTTCEEEEESCTTSHHHHHHGGGS---SEEEEEESCHHHHHHHHHHHHHHTCCSEEEEECBTTBCCSC---
T ss_pred             HHHHHHhCCCCCCEEEEeCCcCcHHHHHHHHhC---CeEEEEeCChhhhhhhhhhhccccccccccccccccccccc---
Confidence            467788899999999999999999999999873   68999999999999999999999999999999998765321   


Q ss_pred             CCCCccccCCCCCCCCCceee
Q 014571          331 SNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLv  351 (422)
                                  .+.||.|++
T Consensus        80 ------------~~~fD~v~~   88 (234)
T d1xxla_          80 ------------DDSFDIITC   88 (234)
T ss_dssp             ------------TTCEEEEEE
T ss_pred             ------------ccccceeee
Confidence                        356898887

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.00  E-value=4.1e-10  Score=97.62  Aligned_cols=79  Identities=22%  Similarity=0.206  Sum_probs=68.3

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .|.+|||+|||+|+.++.++.+  +..+|+++|.++..++.+++|++++|+.+ ++++++|+.++....           
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~r--ga~~v~~ve~~~~a~~~~~~n~~~~~~~~~~~ii~~D~~~~l~~~-----------   80 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSR--GMSAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL-----------   80 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHT--TCCEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB-----------
T ss_pred             CCCeEEEcCCccCHHHHHHHHh--Ccceeeeehhchhhhhhhhhhhhhcccccchhhhccccccccccc-----------
Confidence            6899999999999999887765  34699999999999999999999999865 999999999865321           


Q ss_pred             CCCCCCCCceeecCCc
Q 014571          340 SKDNNYITSQTSDSMK  355 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPC  355 (422)
                         ...||.|++|||-
T Consensus        81 ---~~~fDiIf~DPPy   93 (152)
T d2esra1          81 ---TGRFDLVFLDPPY   93 (152)
T ss_dssp             ---CSCEEEEEECCSS
T ss_pred             ---ccccceeEechhh
Confidence               3569999999994

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.98  E-value=9.3e-10  Score=99.89  Aligned_cols=83  Identities=17%  Similarity=0.118  Sum_probs=67.9

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCC
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~  334 (422)
                      ...+--.|.+|||+|||+|+.+..++..  +..+|+|+|+++..++.+++|+++++.. +.++.+|...+          
T Consensus        40 ~~~~dl~g~~vLDlg~GtG~l~i~a~~~--g~~~v~~vdi~~~~~~~a~~N~~~~~~~-~~~~~~d~~~~----------  106 (201)
T d1wy7a1          40 YSLGDIEGKVVADLGAGTGVLSYGALLL--GAKEVICVEVDKEAVDVLIENLGEFKGK-FKVFIGDVSEF----------  106 (201)
T ss_dssp             HHTTSSTTCEEEEETCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHTGGGTTS-EEEEESCGGGC----------
T ss_pred             HhcCCCCCCEEEECcCcchHHHHHHHHc--CCCEEEEEcCcHHHHHHHHHHHHHcCCC-ceEEECchhhh----------
Confidence            3344457899999999999999887754  3469999999999999999999999874 68888887543          


Q ss_pred             ccccCCCCCCCCCceeecCCcccc
Q 014571          335 PNMCNSKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDaPCSg~  358 (422)
                              ...||.|++|||+...
T Consensus       107 --------~~~fD~Vi~nPP~~~~  122 (201)
T d1wy7a1         107 --------NSRVDIVIMNPPFGSQ  122 (201)
T ss_dssp             --------CCCCSEEEECCCCSSS
T ss_pred             --------CCcCcEEEEcCccccc
Confidence                    3469999999999543

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=3.1e-09  Score=101.04  Aligned_cols=125  Identities=20%  Similarity=0.159  Sum_probs=92.6

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      ..+.+|||+|||+|--++.+|... +..+|+|+|+|+..++.+++|++++|++||.++++|.....              
T Consensus       107 ~~~~~vlDlGtGSG~I~i~la~~~-p~~~v~avDis~~Al~~A~~Na~~~~~~~v~~~~~d~~~~~--------------  171 (274)
T d2b3ta1         107 EQPCRILDLGTGTGAIALALASER-PDCEIIAVDRMPDAVSLAQRNAQHLAIKNIHILQSDWFSAL--------------  171 (274)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHC-TTSEEEEECSSHHHHHHHHHHHHHHTCCSEEEECCSTTGGG--------------
T ss_pred             ccccceeeeehhhhHHHHHHHhhC-CcceeeeccchhHHHhHHHHHHHHhCcccceeeeccccccc--------------
Confidence            456689999999999999999886 46899999999999999999999999999999999976532              


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccc---hhHHHHHHHHHHhc-cceeccEEEe
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCG---ECGMAQEEINALVV-GLRIQKVLVL  406 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~---~l~~~Q~~IL~~a~-~lr~~~~~~~  406 (422)
                        ...+||.|+++||.-....   +...++.. ++.|......   .+. .=+.|+..+. -|+.+|.+++
T Consensus       172 --~~~~fDlIvsNPPYi~~~~---~~~~~~v~-~~eP~~AL~~g~dGl~-~~~~i~~~a~~~L~~~G~l~l  235 (274)
T d2b3ta1         172 --AGQQFAMIVSNPPYIDEQD---PHLQQGDV-RFEPLTALVAADSGMA-DIVHIIEQSRNALVSGGFLLL  235 (274)
T ss_dssp             --TTCCEEEEEECCCCBCTTC---HHHHSSGG-GSSCSTTTBCHHHHTH-HHHHHHHHHGGGEEEEEEEEE
T ss_pred             --CCCceeEEEecchhhhhhh---hccccccc-ccchhhhcccccccch-HHHHHHHHHHHhcCCCCEEEE
Confidence              1347999999999987765   32233321 2333222111   122 2246777764 4899999998

>d1r3ea1 b.122.1.1 (A:238-318) Pseudouridine synthase II TruB, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Pseudouridine synthase II TruB, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.94  E-value=2.5e-10  Score=89.28  Aligned_cols=68  Identities=18%  Similarity=0.230  Sum_probs=58.6

Q ss_pred             CEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEE
Q 014571          124 KEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIG  203 (422)
Q Consensus       124 k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vr  203 (422)
                      +.|+||+++++++++||++|+|||+.++ ++++||.|.|+                                +.++..|+
T Consensus         2 P~VvV~~~A~~~i~~Ga~l~~pGI~~~d-~~~~Gd~V~I~--------------------------------~~~g~~ia   48 (81)
T d1r3ea1           2 PRVVVHQESTKMILNGSQIHLEMLKEWD-GFKKGEVVRVF--------------------------------NEEGRLLA   48 (81)
T ss_dssp             CEEECCTTTHHHHTTTCCEESSSCCEEC-CCCTTCEEEEE--------------------------------CSSSCEEE
T ss_pred             CEEEEccchHHHHhcCCccccccceeec-ccCCCCEEEEE--------------------------------eCCCCEEE
Confidence            5799999999999999999999999998 69999999999                                34677899


Q ss_pred             EccCccCHHHHhcccCcceee
Q 014571          204 QGTAMMSRAGIFRASEGIAVD  224 (422)
Q Consensus       204 vg~a~msreel~~~~~GiaV~  224 (422)
                      +|.+.++++++.+..+|.+.+
T Consensus        49 iG~a~~~S~ei~~~~Kg~~~~   69 (81)
T d1r3ea1          49 LAEAERNSSFLETLRKHERNE   69 (81)
T ss_dssp             EEEESSCTTCCCCSCC----C
T ss_pred             EEEEecCHHHHHHhhcccccc
Confidence            999999999998888887644

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.90  E-value=1.6e-09  Score=96.85  Aligned_cols=80  Identities=11%  Similarity=-0.001  Sum_probs=69.5

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      .|.+|||+|||+|..++..++.  +..+|+++|.++..++.+++|++.++..+++++..|+.++...             
T Consensus        43 ~~~~vLDlfaGsG~~giealsr--Ga~~v~~VE~~~~a~~~~k~N~~~~~~~~~~ii~~d~~~~l~~-------------  107 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSR--YAAGATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ-------------  107 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS-------------
T ss_pred             chhhhhhhhccccceeeeEEec--CcceeEEEEEeechhhHHHHHHhhccccceeeeeecccccccc-------------
Confidence            5779999999999999988876  3469999999999999999999999999999999999887532             


Q ss_pred             CCCCCCCceeecCCcc
Q 014571          341 KDNNYITSQTSDSMKL  356 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCS  356 (422)
                       ....||.|++|||..
T Consensus       108 -~~~~fDlIf~DPPY~  122 (183)
T d2fpoa1         108 -KGTPHNIVFVDPPFR  122 (183)
T ss_dssp             -CCCCEEEEEECCSSS
T ss_pred             -cccccCEEEEcCccc
Confidence             135699999999964

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=98.89  E-value=2e-09  Score=97.56  Aligned_cols=81  Identities=17%  Similarity=0.149  Sum_probs=69.0

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      ....+.++++++|||++||+|..|.++++.   ..+|+|+|+|+.+++.+++++++.|.+|+.++++|+...+..     
T Consensus         7 ll~~~~l~~~~rVLDiGcG~G~~~~~l~~~---~~~v~gvD~s~~~i~~A~~~~~~~~~~~i~~~~~d~~~l~~~-----   78 (231)
T d1vl5a_           7 LMQIAALKGNEEVLDVATGGGHVANAFAPF---VKKVVAFDLTEDILKVARAFIEGNGHQQVEYVQGDAEQMPFT-----   78 (231)
T ss_dssp             HHHHHTCCSCCEEEEETCTTCHHHHHHGGG---SSEEEEEESCHHHHHHHHHHHHHTTCCSEEEEECCC-CCCSC-----
T ss_pred             HHHhcCCCCcCEEEEecccCcHHHHHHHHh---CCEEEEEECCHHHHhhhhhccccccccccccccccccccccc-----
Confidence            346678999999999999999999999887   258999999999999999999999999999999998875421     


Q ss_pred             CCccccCCCCCCCCCceee
Q 014571          333 DEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLv  351 (422)
                                .+.||.|++
T Consensus        79 ----------~~~fD~v~~   87 (231)
T d1vl5a_          79 ----------DERFHIVTC   87 (231)
T ss_dssp             ----------TTCEEEEEE
T ss_pred             ----------ccccccccc
Confidence                      356888875

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.87  E-value=1.4e-09  Score=97.21  Aligned_cols=83  Identities=17%  Similarity=0.153  Sum_probs=70.1

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCcccc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      -.|.+|||+|||+|+.++..++.  +..+|+++|.++..++.+++|++.++.. ++.+++.|+.++......        
T Consensus        40 ~~~~~vLDlfaGsG~~g~ea~sr--Ga~~v~~ve~~~~a~~~~~~N~~~~~~~~~~~i~~~D~~~~l~~~~~--------  109 (182)
T d2fhpa1          40 FDGGMALDLYSGSGGLAIEAVSR--GMDKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE--------  109 (182)
T ss_dssp             CSSCEEEETTCTTCHHHHHHHHT--TCSEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH--------
T ss_pred             cCCCEEEEcccccccccceeeec--chhHHHHHHHHHHHHHHHHHHhhhhhcccccccccccchhhhhhhcc--------
Confidence            36999999999999999988886  3458999999999999999999999985 699999999887543211        


Q ss_pred             CCCCCCCCCceeecCCc
Q 014571          339 NSKDNNYITSQTSDSMK  355 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPC  355 (422)
                         ....||.|++|||-
T Consensus       110 ---~~~~fDlIflDPPY  123 (182)
T d2fhpa1         110 ---EKLQFDLVLLDPPY  123 (182)
T ss_dssp             ---TTCCEEEEEECCCG
T ss_pred             ---cCCCcceEEechhh
Confidence               13469999999995

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.87  E-value=4.9e-09  Score=96.58  Aligned_cols=86  Identities=15%  Similarity=0.135  Sum_probs=72.6

Q ss_pred             HHhc--CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-----cceEEEecchhhhhh
Q 014571          254 AHAL--DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-----KCITTYKLDALKAVR  326 (422)
Q Consensus       254 ~~~L--~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-----~nv~~~~~Da~~~~~  326 (422)
                      .++|  +++||++|||++||+|..|..+|+++++.|+|+++|+++..++.+++++++.++     .++.+..+|+.....
T Consensus        67 le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~~~~~  146 (224)
T d1i1na_          67 LELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYA  146 (224)
T ss_dssp             HHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCG
T ss_pred             HHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecccccc
Confidence            3445  678999999999999999999999999899999999999999999999998765     468899999875432


Q ss_pred             ccCCCCCCccccCCCCCCCCCceeecCC
Q 014571          327 RKNESNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                                     ..+.||+|++++.
T Consensus       147 ---------------~~~~fD~I~~~~~  159 (224)
T d1i1na_         147 ---------------EEAPYDAIHVGAA  159 (224)
T ss_dssp             ---------------GGCCEEEEEECSB
T ss_pred             ---------------hhhhhhhhhhhcc
Confidence                           1356999998653

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.85  E-value=2.1e-09  Score=94.99  Aligned_cols=82  Identities=18%  Similarity=0.109  Sum_probs=63.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      ...|.+|||+|||+|+.++.++..   .++++++|.++..++.+++|++.+|+.+ ++...|+..+.....         
T Consensus        39 ~~~g~~vLDl~~G~G~~~i~a~~~---ga~vv~vD~~~~a~~~~~~N~~~~~~~~-~v~~~~~d~~~~~~~---------  105 (171)
T d1ws6a1          39 YPRRGRFLDPFAGSGAVGLEAASE---GWEAVLVEKDPEAVRLLKENVRRTGLGA-RVVALPVEVFLPEAK---------  105 (171)
T ss_dssp             CTTCCEEEEETCSSCHHHHHHHHT---TCEEEEECCCHHHHHHHHHHHHHHTCCC-EEECSCHHHHHHHHH---------
T ss_pred             ccCCCeEEEeccccchhhhhhhhc---cchhhhcccCHHHHhhhhHHHHhhcccc-ceeeeehhccccccc---------
Confidence            457889999999999999887765   3689999999999999999999999864 555555543321110         


Q ss_pred             CCCCCCCCCceeecCCc
Q 014571          339 NSKDNNYITSQTSDSMK  355 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPC  355 (422)
                        ....+||.|++|||.
T Consensus       106 --~~~~~fD~If~DPPY  120 (171)
T d1ws6a1         106 --AQGERFTVAFMAPPY  120 (171)
T ss_dssp             --HTTCCEEEEEECCCT
T ss_pred             --ccCCccceeEEcccc
Confidence              113569999999996

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=98.82  E-value=5.6e-09  Score=96.22  Aligned_cols=76  Identities=20%  Similarity=0.137  Sum_probs=66.5

Q ss_pred             ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhh
Q 014571          247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA  324 (422)
Q Consensus       247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~  324 (422)
                      +..-..++..+.++||++|||++||+|+-+..+++..  ..+|+++|+|+.+++.++++++..|+.+ |++..+|+...
T Consensus        19 ~~~~~~l~~~~~l~pg~~VLDiGCG~G~~~~~la~~~--~~~v~GvD~s~~~~~~ar~~~~~~gl~~~v~~~~~d~~~~   95 (245)
T d1nkva_          19 EEKYATLGRVLRMKPGTRILDLGSGSGEMLCTWARDH--GITGTGIDMSSLFTAQAKRRAEELGVSERVHFIHNDAAGY   95 (245)
T ss_dssp             HHHHHHHHHHTCCCTTCEEEEETCTTCHHHHHHHHHT--CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCCTTC
T ss_pred             HHHHHHHHHHcCCCCCCEEEEEcCCCCHHHHHHHHhc--CCEEEEEecccchhhHHHHHHHHhhccccchhhhhHHhhc
Confidence            4445567889999999999999999999999998864  3699999999999999999999999854 99999998764

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.81  E-value=7.1e-09  Score=95.17  Aligned_cols=97  Identities=15%  Similarity=0.193  Sum_probs=80.0

Q ss_pred             cceEEEeChhHHH--HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEE
Q 014571          240 EGEIFLQNLPSIV--TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTY  317 (422)
Q Consensus       240 ~G~~~~Qd~~S~l--v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~  317 (422)
                      .|....|  +++.  ..+.|++++|++|||++||+|.-|..+|.+.+  ++|+++|+++..++.++++++++|+.|+.++
T Consensus        57 ~g~~is~--P~~~a~ml~~L~l~~g~~VLeIGsGsGY~taila~l~g--~~V~~ie~~~~l~~~a~~~l~~~g~~nv~~~  132 (215)
T d1jg1a_          57 AGQTVSA--PHMVAIMLEIANLKPGMNILEVGTGSGWNAALISEIVK--TDVYTIERIPELVEFAKRNLERAGVKNVHVI  132 (215)
T ss_dssp             TTCEECC--HHHHHHHHHHHTCCTTCCEEEECCTTSHHHHHHHHHHC--SCEEEEESCHHHHHHHHHHHHHTTCCSEEEE
T ss_pred             hhhhhhh--hhhHHHHHHhhccCccceEEEecCCCChhHHHHHHhhC--ceeEEEeccHHHHHHHHHHHHHcCCceeEEE
Confidence            4555444  5543  47888999999999999999999999998874  6799999999999999999999999999999


Q ss_pred             ecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          318 KLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       318 ~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      ++|+..-..               ..+.||+|++.+.+
T Consensus       133 ~gd~~~g~~---------------~~~pfD~Iiv~~a~  155 (215)
T d1jg1a_         133 LGDGSKGFP---------------PKAPYDVIIVTAGA  155 (215)
T ss_dssp             ESCGGGCCG---------------GGCCEEEEEECSBB
T ss_pred             ECccccCCc---------------ccCcceeEEeeccc
Confidence            999875321               24679999995433

>d2cx1a1 b.122.1.1 (A:91-183) Hypothetical protein APE0525, C-terminal domain {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Hypothetical protein APE0525, C-terminal domain
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=98.81  E-value=2.9e-09  Score=85.34  Aligned_cols=71  Identities=27%  Similarity=0.400  Sum_probs=62.7

Q ss_pred             EEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEEE
Q 014571          125 EVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQ  204 (422)
Q Consensus       125 ~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrv  204 (422)
                      .|+||++|.+|+++||++++|||+..+.+|++||.|+|..                               +.++..+++
T Consensus         3 ~i~vd~gA~~al~~GA~Lm~pGIv~~~g~f~~Gd~V~I~~-------------------------------~~~~~~iAv   51 (93)
T d2cx1a1           3 VVLVDKGAAIALAKGAHLMIPGVVGVEGSFTRGDVVAALY-------------------------------HETRTPVMV   51 (93)
T ss_dssp             EEEECHHHHHHHHTTCCEEGGGEEEEEECCCTTCEEEEEE-------------------------------TTTTEEEEE
T ss_pred             EEEECcCHHHHHHCCCCcCccccEECCCCCCCCCEEEEEE-------------------------------CCCCeEEEE
Confidence            5899999999999999999999999999999999999993                               446788999


Q ss_pred             ccCccCHHHHhc----ccCcceeecc
Q 014571          205 GTAMMSRAGIFR----ASEGIAVDMH  226 (422)
Q Consensus       205 g~a~msreel~~----~~~GiaV~~~  226 (422)
                      |++.++.+++..    ..+|.+++..
T Consensus        52 G~~~~~s~ei~~~~g~~~kG~~v~~l   77 (93)
T d2cx1a1          52 GVAEVDSSALEKLYREKARGRAVRRV   77 (93)
T ss_dssp             EEESSCHHHHHHHHHHTCCSEEEEEE
T ss_pred             EEEecCHHHHHHHhccCCCceEEEEE
Confidence            999999999865    4678887643

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=98.80  E-value=1.2e-08  Score=92.83  Aligned_cols=116  Identities=4%  Similarity=-0.021  Sum_probs=86.8

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      ++..|||+|||+|..+.++|+. .+...++|+|+++.++..+.+++++.|++||.++.+|+..+.....           
T Consensus        29 ~~PlvLeIGcG~G~~~~~lA~~-~p~~~~iGiD~~~~~i~~a~~~~~~~~l~Nv~~~~~Da~~l~~~~~-----------   96 (204)
T d2fcaa1          29 DNPIHIEVGTGKGQFISGMAKQ-NPDINYIGIELFKSVIVTAVQKVKDSEAQNVKLLNIDADTLTDVFE-----------   96 (204)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHH-CTTSEEEEECSCHHHHHHHHHHHHHSCCSSEEEECCCGGGHHHHCC-----------
T ss_pred             CCceEEEEEecCcHHHHHHHHh-CCCCcEEEeecchHHHHHHHHHHHHHhccCchhcccchhhhhcccC-----------
Confidence            4558999999999999999998 4678999999999999999999999999999999999987653221           


Q ss_pred             CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe-hhh
Q 014571          341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL-TAL  409 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~-t~~  409 (422)
                        .+.||.|++--|..-.-.              .  ... .++  .|.++|+.+.. |+.+|.|.+ |++
T Consensus        97 --~~~~d~v~i~fp~P~~k~--------------~--h~k-~Rl--~~~~~l~~~~r~LkpgG~l~i~TD~  146 (204)
T d2fcaa1          97 --PGEVKRVYLNFSDPWPKK--------------R--HEK-RRL--TYSHFLKKYEEVMGKGGSIHFKTDN  146 (204)
T ss_dssp             --TTSCCEEEEESCCCCCSG--------------G--GGG-GST--TSHHHHHHHHHHHTTSCEEEEEESC
T ss_pred             --chhhhccccccccccchh--------------h--hcc-hhh--hHHHHHHHHHHhCCCCcEEEEEECC
Confidence              345788877433221111              0  110 111  56678887766 899999988 554

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=98.69  E-value=3.1e-08  Score=91.64  Aligned_cols=110  Identities=15%  Similarity=0.125  Sum_probs=80.7

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .++|.+|||+|||+|+-+..++..  +.++|+|+|+|+.+++.++++++..+.. ++.+.++|+.....           
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~--~~~~v~GiD~S~~~l~~A~~r~~~~~~~~~v~f~~~D~~~~~~-----------   88 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERA--GIGEYYGVDIAEVSINDARVRARNMKRRFKVFFRAQDSYGRHM-----------   88 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH--TCSEEEEEESCHHHHHHHHHHHHTSCCSSEEEEEESCTTTSCC-----------
T ss_pred             CCCcCEEEEecccCcHHHHHHHHc--CCCeEEEecCCHHHHHHHHHHHHhcCCCcceEEEEcchhhhcc-----------
Confidence            468899999999999999998876  3468999999999999999999888764 79999999864321           


Q ss_pred             cCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          338 CNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                         .....||.|++    .+.-.             |....      .+....+++++.. |+.+|+++.|
T Consensus        89 ---~~~~~fD~V~~----~~~l~-------------~~~~~------~~~~~~~l~~i~~~Lk~gG~~i~~  133 (252)
T d1ri5a_          89 ---DLGKEFDVISS----QFSFH-------------YAFST------SESLDIAQRNIARHLRPGGYFIMT  133 (252)
T ss_dssp             ---CCSSCEEEEEE----ESCGG-------------GGGSS------HHHHHHHHHHHHHTEEEEEEEEEE
T ss_pred             ---cccccceEEEE----cceee-------------ecCCC------HHHHHHHHHHHhceeCCCCEEEEE
Confidence               12456998875    22111             22111      1244567777755 8999999884

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=98.67  E-value=6.1e-08  Score=88.87  Aligned_cols=104  Identities=15%  Similarity=0.040  Sum_probs=77.3

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      ++.+|||++||+|..|..+++.   ..+|+|+|.|+.+++.++++++..|. +++++++|++.+..              
T Consensus        37 ~~~~vLDiGCG~G~~~~~l~~~---g~~v~GvD~S~~ml~~A~~~~~~~~~-~v~~~~~d~~~~~~--------------   98 (246)
T d1y8ca_          37 VFDDYLDLACGTGNLTENLCPK---FKNTWAVDLSQEMLSEAENKFRSQGL-KPRLACQDISNLNI--------------   98 (246)
T ss_dssp             CTTEEEEETCTTSTTHHHHGGG---SSEEEEECSCHHHHHHHHHHHHHTTC-CCEEECCCGGGCCC--------------
T ss_pred             CCCeEEEEeCcCCHHHHHHHHh---CCccEeeccchhhhhhccccccccCc-cceeeccchhhhcc--------------
Confidence            4579999999999999999987   25899999999999999999998887 69999999876521              


Q ss_pred             CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhc-cceeccEEEeh
Q 014571          341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVV-GLRIQKVLVLT  407 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~-~lr~~~~~~~t  407 (422)
                        .+.||.|++  .+...+.              -.      .. +-+...|+++. .|+.+|.++++
T Consensus        99 --~~~fD~i~~--~~~~~~~--------------~~------~~-~~~~~~l~~~~~~LkpgG~~i~~  141 (246)
T d1y8ca_          99 --NRKFDLITC--CLDSTNY--------------II------DS-DDLKKYFKAVSNHLKEGGVFIFD  141 (246)
T ss_dssp             --SCCEEEEEE--CTTGGGG--------------CC------SH-HHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             --cccccccce--eeeeeec--------------cC------CH-HHHHHHHHHHHHhCCCCeEEEEE
Confidence              356999986  1111111              11      11 12345666664 48999999873

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=98.65  E-value=3e-08  Score=93.22  Aligned_cols=80  Identities=16%  Similarity=0.053  Sum_probs=67.5

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCC
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      ....+.+|.+|||++||+|+.+..+++..  ..+|+|+|+|+.+++.++++++..|+. +++++++|+..++..      
T Consensus        61 ~~~~l~~~~~vLDiGcG~G~~~~~la~~~--~~~v~gvD~s~~~i~~a~~~~~~~gl~~~v~~~~~d~~~l~~~------  132 (282)
T d2o57a1          61 MTGVLQRQAKGLDLGAGYGGAARFLVRKF--GVSIDCLNIAPVQNKRNEEYNNQAGLADNITVKYGSFLEIPCE------  132 (282)
T ss_dssp             HTTCCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHHHTCTTTEEEEECCTTSCSSC------
T ss_pred             HhcCCCCCCEEEEeCCCCcHHHhhhhccC--CcEEEEEeccchhhhhhhccccccccccccccccccccccccc------
Confidence            34468899999999999999999999875  358999999999999999999999985 799999998765321      


Q ss_pred             CccccCCCCCCCCCceee
Q 014571          334 EPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLv  351 (422)
                               .+.||.|++
T Consensus       133 ---------~~sfD~V~~  141 (282)
T d2o57a1         133 ---------DNSYDFIWS  141 (282)
T ss_dssp             ---------TTCEEEEEE
T ss_pred             ---------ccccchhhc
Confidence                     356898864

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=98.64  E-value=3.5e-08  Score=87.81  Aligned_cols=82  Identities=11%  Similarity=0.054  Sum_probs=67.1

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc--eEEEecchhhhhhccCCCCCCcccc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC--ITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n--v~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      .|.+|||+|||+|..+++.++.  +...|+.+|.+.+-++.+++|++++++.+  ..+...|+..+....          
T Consensus        43 ~~~~vLDlFaGsG~~glEalSR--GA~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~----------  110 (183)
T d2ifta1          43 HQSECLDGFAGSGSLGFEALSR--QAKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP----------  110 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHT--TCSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC----------
T ss_pred             ccceEeecccCccceeeeeeee--cceeeEEeecccchhhhHhhHHhhhccccccccccccccccccccc----------
Confidence            6789999999999999998886  45699999999999999999999999754  677778876654321          


Q ss_pred             CCCCCCCCCceeecCCcc
Q 014571          339 NSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCS  356 (422)
                        .....||.|++|||-.
T Consensus       111 --~~~~~fDlIFlDPPY~  126 (183)
T d2ifta1         111 --QNQPHFDVVFLDPPFH  126 (183)
T ss_dssp             --CSSCCEEEEEECCCSS
T ss_pred             --ccCCcccEEEechhHh
Confidence              1134699999999974

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.63  E-value=5.2e-08  Score=89.17  Aligned_cols=110  Identities=13%  Similarity=0.032  Sum_probs=81.8

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .+|.+|||+|||+|.-+..++...  ..+|+++|+|+.+++.+++++++.+. ++..+..|+.......           
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~--~~~v~~id~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~-----------  117 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAP--IDEHWIIECNDGVFQRLRDWAPRQTH-KVIPLKGLWEDVAPTL-----------  117 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC--EEEEEEEECCHHHHHHHHHHGGGCSS-EEEEEESCHHHHGGGS-----------
T ss_pred             cCCCeEEEeeccchHHHHHHHHcC--CCeEEEeCCCHHHHHHHHHHhhhccc-cccccccccccccccc-----------
Confidence            679999999999999999998863  36899999999999999999877653 5777888877654321           


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                        ..+.||.|+.|+.-+....                      .....+.+.++++.. ||.||++++.
T Consensus       118 --~~~~fD~i~fD~~~~~~~~----------------------~~~~~~~~~~~~~~r~LkpGG~~~~~  162 (229)
T d1zx0a1         118 --PDGHFDGILYDTYPLSEET----------------------WHTHQFNFIKNHAFRLLKPGGVLTYC  162 (229)
T ss_dssp             --CTTCEEEEEECCCCCBGGG----------------------TTTHHHHHHHHTHHHHEEEEEEEEEC
T ss_pred             --ccccccceeeccccccccc----------------------ccccCHHHHHHHHHHHcCCCcEEEEE
Confidence              1357999999986554444                      011123345665644 8999999874

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.62  E-value=1.1e-07  Score=86.13  Aligned_cols=116  Identities=9%  Similarity=0.022  Sum_probs=86.2

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      ....|||+|||.|..+.++|+.. +...++|+|++..++..+.+++++.|++|+.++.+|+..+....            
T Consensus        31 ~~plvLdIGcG~G~~~~~lA~~~-p~~~~iGid~~~~~v~~a~~~~~~~~l~Ni~~~~~da~~l~~~~------------   97 (204)
T d1yzha1          31 DNPIHVEVGSGKGAFVSGMAKQN-PDINYIGIDIQKSVLSYALDKVLEVGVPNIKLLWVDGSDLTDYF------------   97 (204)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHHCCSSEEEEECCSSCGGGTS------------
T ss_pred             CCCeEEEEeccCCHHHHHHHHHC-CCCceEEEeccHHHHHHHHHhhhhhccccceeeecCHHHHhhhc------------
Confidence            34589999999999999999985 56899999999999999999999999999999999998764211            


Q ss_pred             CCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe-hhh
Q 014571          341 KDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL-TAL  409 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~-t~~  409 (422)
                       ....+|.|.+              -.|+-|.+-+-.+.   +  -.|.+.|+.... |+.+|.+.+ |++
T Consensus        98 -~~~~~~~i~i--------------~fPdPw~K~~h~kr---R--l~~~~~l~~~~~~LkpgG~l~i~TD~  148 (204)
T d1yzha1          98 -EDGEIDRLYL--------------NFSDPWPKKRHEKR---R--LTYKTFLDTFKRILPENGEIHFKTDN  148 (204)
T ss_dssp             -CTTCCSEEEE--------------ESCCCCCSGGGGGG---S--TTSHHHHHHHHHHSCTTCEEEEEESC
T ss_pred             -cCCceehhcc--------------cccccccchhhhhh---h--hhHHHHHHHHHHhCCCCcEEEEEECC
Confidence             1244677765              24554322211111   1  156778887765 899999977 543

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=98.62  E-value=7.2e-08  Score=88.81  Aligned_cols=81  Identities=20%  Similarity=0.183  Sum_probs=68.0

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      ....|++++|++|||++||+|.-|..||.+.   ++|+++|+++..++.+++++..  ..|+.++.+|+.....      
T Consensus        62 ml~~L~l~~g~~VLdIG~GsGy~ta~La~l~---~~V~aiE~~~~~~~~A~~~~~~--~~nv~~~~~d~~~g~~------  130 (224)
T d1vbfa_          62 MLDELDLHKGQKVLEIGTGIGYYTALIAEIV---DKVVSVEINEKMYNYASKLLSY--YNNIKLILGDGTLGYE------  130 (224)
T ss_dssp             HHHHTTCCTTCEEEEECCTTSHHHHHHHHHS---SEEEEEESCHHHHHHHHHHHTT--CSSEEEEESCGGGCCG------
T ss_pred             HHHHhhhcccceEEEecCCCCHHHHHHHHHh---cccccccccHHHHHHHHHHHhc--ccccccccCchhhcch------
Confidence            3678899999999999999999999999874   7899999999999999988764  4789999999865321      


Q ss_pred             CCccccCCCCCCCCCceeecC
Q 014571          333 DEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDa  353 (422)
                               ..+.||+|++.+
T Consensus       131 ---------~~~pfD~Iiv~~  142 (224)
T d1vbfa_         131 ---------EEKPYDRVVVWA  142 (224)
T ss_dssp             ---------GGCCEEEEEESS
T ss_pred             ---------hhhhHHHHHhhc
Confidence                     135699999854

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.59  E-value=6.1e-08  Score=87.67  Aligned_cols=77  Identities=10%  Similarity=0.019  Sum_probs=61.1

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      +..++--.|.+|||+|||+|..+..++.+  +..+|+++|+++..++.+++|+     .++.++++|...+         
T Consensus        41 ~~~~~dl~Gk~VLDlGcGtG~l~i~a~~~--ga~~V~~vDid~~a~~~ar~N~-----~~~~~~~~D~~~l---------  104 (197)
T d1ne2a_          41 IYNDGNIGGRSVIDAGTGNGILACGSYLL--GAESVTAFDIDPDAIETAKRNC-----GGVNFMVADVSEI---------  104 (197)
T ss_dssp             HHHHTSSBTSEEEEETCTTCHHHHHHHHT--TBSEEEEEESCHHHHHHHHHHC-----TTSEEEECCGGGC---------
T ss_pred             HHHcCCCCCCEEEEeCCCCcHHHHHHHHc--CCCcccccccCHHHHHHHHHcc-----ccccEEEEehhhc---------
Confidence            44444447999999999999888766654  3468999999999999999885     4678889987643         


Q ss_pred             CccccCCCCCCCCCceeecCCc
Q 014571          334 EPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                               .++||.|+.|||-
T Consensus       105 ---------~~~fD~Vi~NPPf  117 (197)
T d1ne2a_         105 ---------SGKYDTWIMNPPF  117 (197)
T ss_dssp             ---------CCCEEEEEECCCC
T ss_pred             ---------CCcceEEEeCccc
Confidence                     3569999999995

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.58  E-value=4e-08  Score=90.43  Aligned_cols=93  Identities=15%  Similarity=0.139  Sum_probs=73.7

Q ss_pred             hHHHH--HHhc--CCCCCCeEEEecCCCChhHHHHHhccCCC-----cEEEEEcCChHHHHHHHHHHHHh-----CCcce
Q 014571          249 PSIVT--AHAL--DPQKGERILDMCAAPGGKTTAIASLLRDE-----GEVVAVDRSHNKVMDIQKLAAEM-----GLKCI  314 (422)
Q Consensus       249 ~S~lv--~~~L--~p~pg~~VLD~CAgpGgKT~~la~l~~~~-----g~V~A~D~s~~rl~~l~~~l~r~-----g~~nv  314 (422)
                      +++.+  .++|  +++||++|||++||+|--|..++.+++..     ++|+++|+++..++.+++|+.+.     +..|+
T Consensus        64 P~~~a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv  143 (223)
T d1r18a_          64 PHMHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQL  143 (223)
T ss_dssp             HHHHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSE
T ss_pred             hhhHHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEE
Confidence            55543  4455  78999999999999999999999987544     48999999999999999987654     55789


Q ss_pred             EEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          315 TTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       315 ~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      .+..+|+.....               ..+.||+|++++.+.
T Consensus       144 ~~~~~d~~~~~~---------------~~~~fD~Iiv~~a~~  170 (223)
T d1r18a_         144 LIVEGDGRKGYP---------------PNAPYNAIHVGAAAP  170 (223)
T ss_dssp             EEEESCGGGCCG---------------GGCSEEEEEECSCBS
T ss_pred             EEEecccccccc---------------cccceeeEEEEeech
Confidence            999999875321               145699999976543

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.58  E-value=5.3e-08  Score=89.90  Aligned_cols=67  Identities=22%  Similarity=0.285  Sum_probs=58.2

Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      .+.++||++|||++||+|.-+.|+|+.. +.|.|+|+|+|+.+++.+++++++.  +|+.++..|+....
T Consensus        69 ~l~ikpG~~VLDlGcGsG~~~~~la~~~-~~g~V~aVDiS~~~i~~a~~~a~~~--~ni~~i~~d~~~~~  135 (230)
T d1g8sa_          69 VMPIKRDSKILYLGASAGTTPSHVADIA-DKGIVYAIEYAPRIMRELLDACAER--ENIIPILGDANKPQ  135 (230)
T ss_dssp             CCCCCTTCEEEEESCCSSHHHHHHHHHT-TTSEEEEEESCHHHHHHHHHHTTTC--TTEEEEECCTTCGG
T ss_pred             hCCCCCCCEEEEeCEEcCHHHHHHHHhC-CCCEEEEEeCcHHHHHHHHHHHhhh--cccceEEEeeccCc
Confidence            3458999999999999999999999974 5799999999999999999987654  57888999988754

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=98.57  E-value=1e-07  Score=84.75  Aligned_cols=80  Identities=23%  Similarity=0.208  Sum_probs=65.2

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      +...+-.+++| +|||++||+|.-+..+++.   ..+|+|+|+|+.+++.++++++..|++++.+...|.....      
T Consensus        22 ~~~~~~~~~~g-rvLDiGcG~G~~~~~la~~---g~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~d~~~~~------   91 (198)
T d2i6ga1          22 VLAAAKVVAPG-RTLDLGCGNGRNSLYLAAN---GYDVTAWDKNPASMANLERIKAAEGLDNLQTDLVDLNTLT------   91 (198)
T ss_dssp             HHHHHTTSCSC-EEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTCTTEEEEECCTTTCC------
T ss_pred             HHHHcccCCCC-cEEEECCCCCHHHHHHHHH---hhhhccccCcHHHHHHHHHHhhhccccchhhhheeccccc------
Confidence            33333334555 9999999999999999986   3589999999999999999999999999999999976542      


Q ss_pred             CCCccccCCCCCCCCCceee
Q 014571          332 NDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLv  351 (422)
                                ..+.||.|++
T Consensus        92 ----------~~~~fD~I~~  101 (198)
T d2i6ga1          92 ----------FDGEYDFILS  101 (198)
T ss_dssp             ----------CCCCEEEEEE
T ss_pred             ----------ccccccEEEE
Confidence                      1356899886

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.55  E-value=2e-07  Score=88.92  Aligned_cols=124  Identities=11%  Similarity=0.006  Sum_probs=91.8

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKA  324 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~  324 (422)
                      |..--..++..+++++|++|||++||-|+-+.++|+..+  .+|+++++|+..++.++++++..|+.+ +.+...|....
T Consensus        46 q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~~~~~a~~~g--~~v~git~s~~q~~~a~~~~~~~~l~~~v~~~~~d~~~~  123 (291)
T d1kpia_          46 QYAKRKLALDKLNLEPGMTLLDIGCGWGSTMRHAVAEYD--VNVIGLTLSENQYAHDKAMFDEVDSPRRKEVRIQGWEEF  123 (291)
T ss_dssp             HHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHHSCCSSCEEEEECCGGGC
T ss_pred             HHHHHHHHHHhcCCCCCCEEEEecCcchHHHHHHHHhcC--cceeeccchHHHHHHHHHHHHhhccchhhhhhhhccccc
Confidence            333344677888999999999999999999999998763  699999999999999999999999864 77777775321


Q ss_pred             hhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccE
Q 014571          325 VRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKV  403 (422)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~  403 (422)
                                        .+.||+|+.      .++++|+......            ...+.-...++.+.. |+.+|.
T Consensus       124 ------------------~~~fD~i~s------ie~~eH~~~~~~~------------~~~~~~~~~f~~i~~~LkpgG~  167 (291)
T d1kpia_         124 ------------------DEPVDRIVS------LGAFEHFADGAGD------------AGFERYDTFFKKFYNLTPDDGR  167 (291)
T ss_dssp             ------------------CCCCSEEEE------ESCGGGTTCCSSC------------CSTTHHHHHHHHHHHTSCTTCE
T ss_pred             ------------------ccccceEee------chhHHhcchhhhh------------hHHHHHHHHHHHHHHhCCCCCc
Confidence                              356998875      5675556432211            111233456666655 899999


Q ss_pred             EEeh
Q 014571          404 LVLT  407 (422)
Q Consensus       404 ~~~t  407 (422)
                      +++.
T Consensus       168 ~~l~  171 (291)
T d1kpia_         168 MLLH  171 (291)
T ss_dssp             EEEE
T ss_pred             eEEE
Confidence            9983

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.53  E-value=8.8e-08  Score=85.48  Aligned_cols=105  Identities=17%  Similarity=0.115  Sum_probs=77.5

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      .+++.+|||++||+|..|.++++.   ..+|+|+|+|+.+++.+++++...+. ++..++.|+.+.+..           
T Consensus        35 l~~~~~ILDiGcG~G~~~~~la~~---~~~v~giD~S~~~i~~ak~~~~~~~~-~~~~~~~d~~~l~~~-----------   99 (226)
T d1ve3a1          35 MKKRGKVLDLACGVGGFSFLLEDY---GFEVVGVDISEDMIRKAREYAKSRES-NVEFIVGDARKLSFE-----------   99 (226)
T ss_dssp             CCSCCEEEEETCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEECCTTSCCSC-----------
T ss_pred             cCCCCEEEEECCCcchhhhhHhhh---hcccccccccccchhhhhhhhccccc-ccccccccccccccc-----------
Confidence            357789999999999999999986   46899999999999999999998874 467888888765321           


Q ss_pred             CCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          339 NSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                          .+.||.|++    .  ..+           .|-+.       . -...+|+++.. |+.||.++++
T Consensus       100 ----~~~fD~I~~----~--~~l-----------~~~~~-------~-d~~~~l~~i~~~LkpgG~lii~  140 (226)
T d1ve3a1         100 ----DKTFDYVIF----I--DSI-----------VHFEP-------L-ELNQVFKEVRRVLKPSGKFIMY  140 (226)
T ss_dssp             ----TTCEEEEEE----E--SCG-----------GGCCH-------H-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ----CcCceEEEE----e--cch-----------hhCCh-------h-HHHHHHHHHHHHcCcCcEEEEE
Confidence                356999887    1  121           12211       1 12346666655 7999998873

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.53  E-value=9.7e-08  Score=87.13  Aligned_cols=107  Identities=20%  Similarity=0.157  Sum_probs=80.4

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      ....++.+|||++||+|..+..+++.   ...|+|+|.|+.+++.++++++..+. ++.+.++|+++++.          
T Consensus        37 ~~~~~~~~iLDiGcGtG~~~~~l~~~---~~~v~gvD~s~~mi~~a~~~~~~~~~-~i~~~~~d~~~l~~----------  102 (251)
T d1wzna1          37 DAKREVRRVLDLACGTGIPTLELAER---GYEVVGLDLHEEMLRVARRKAKERNL-KIEFLQGDVLEIAF----------  102 (251)
T ss_dssp             TCSSCCCEEEEETCTTCHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTC-CCEEEESCGGGCCC----------
T ss_pred             hcCCCCCEEEEeCCCCCccchhhccc---ceEEEEEeeccccccccccccccccc-cchheehhhhhccc----------
Confidence            35667789999999999999999986   35899999999999999999998887 69999999987632          


Q ss_pred             ccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          337 MCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                            .+.||.|++    ++ ++   +        .|.       .-. -+.+.|+++.. |+.+|+++++
T Consensus       103 ------~~~fD~I~~----~~-~~---~--------~~~-------~~~-~~~~~L~~~~~~LkpgG~lii~  144 (251)
T d1wzna1         103 ------KNEFDAVTM----FF-ST---I--------MYF-------DEE-DLRKLFSKVAEALKPGGVFITD  144 (251)
T ss_dssp             ------CSCEEEEEE----CS-SG---G--------GGS-------CHH-HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ------ccccchHhh----hh-hh---h--------hcC-------ChH-HHHHHHHHHHHHcCCCcEEEEE
Confidence                  346998887    11 12   0        011       011 22356777755 8999999884

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=98.52  E-value=9e-08  Score=89.70  Aligned_cols=85  Identities=16%  Similarity=0.161  Sum_probs=68.5

Q ss_pred             ChhHHHHHHhcC--CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhh
Q 014571          247 NLPSIVTAHALD--PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKA  324 (422)
Q Consensus       247 d~~S~lv~~~L~--p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~  324 (422)
                      .+..+++..+|.  .+||++|||++||+|..+..++.+   ..+|+|+|+|+.+++.+++|+++.|++ ++++++|....
T Consensus       104 H~TT~l~l~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~---g~~V~gvDis~~av~~A~~na~~n~~~-~~~~~~d~~~~  179 (254)
T d2nxca1         104 HETTRLALKALARHLRPGDKVLDLGTGSGVLAIAAEKL---GGKALGVDIDPMVLPQAEANAKRNGVR-PRFLEGSLEAA  179 (254)
T ss_dssp             SHHHHHHHHHHHHHCCTTCEEEEETCTTSHHHHHHHHT---TCEEEEEESCGGGHHHHHHHHHHTTCC-CEEEESCHHHH
T ss_pred             cchhhHHHHHHHhhcCccCEEEEcccchhHHHHHHHhc---CCEEEEEECChHHHHHHHHHHHHcCCc-eeEEecccccc
Confidence            455667777775  689999999999999988877764   368999999999999999999999985 57888887643


Q ss_pred             hhccCCCCCCccccCCCCCCCCCceee
Q 014571          325 VRRKNESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                      ..                .+.||.|++
T Consensus       180 ~~----------------~~~fD~V~a  190 (254)
T d2nxca1         180 LP----------------FGPFDLLVA  190 (254)
T ss_dssp             GG----------------GCCEEEEEE
T ss_pred             cc----------------ccccchhhh
Confidence            21                246899986

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.49  E-value=2.4e-07  Score=87.40  Aligned_cols=124  Identities=12%  Similarity=0.029  Sum_probs=84.1

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc----ceEEEecchhhhhh
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK----CITTYKLDALKAVR  326 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~----nv~~~~~Da~~~~~  326 (422)
                      .+....|..+++.+|||+|||+|..+..+|+.   ..+|+|+|.|+.+++.+++++...+..    ...+...|......
T Consensus        46 ~~l~~~l~~~~~~~vLD~GcG~G~~~~~la~~---g~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (292)
T d1xvaa_          46 AWLLGLLRQHGCHRVLDVACGTGVDSIMLVEE---GFSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDK  122 (292)
T ss_dssp             HHHHHHHHHTTCCEEEESSCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHH
T ss_pred             HHHHHHhhhcCCCEEEEecCCCcHHHHHHHHc---CCeeeeccCchHHHHHHHHHHHhcccccccceeeeeecccccccc
Confidence            34556677788899999999999999999986   258999999999999999999887653    24455555544332


Q ss_pred             ccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEE
Q 014571          327 RKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLV  405 (422)
Q Consensus       327 ~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~  405 (422)
                      ..            .....||.|++    .+... .           +-+...   .-..-++.+|+++.. |+.+|+++
T Consensus       123 ~~------------~~~~~fd~v~~----~~~~~-~-----------~~~~~~---~~~~~~~~~l~~~~~~LkpgG~li  171 (292)
T d1xvaa_         123 DV------------PAGDGFDAVIC----LGNSF-A-----------HLPDSK---GDQSEHRLALKNIASMVRPGGLLV  171 (292)
T ss_dssp             HS------------CCTTCEEEEEE----CSSCG-G-----------GSCCTT---SSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred             cc------------CCCCCceEEEE----ecCch-h-----------hcCCcc---cChHHHHHHHHHHHHHcCcCcEEE
Confidence            11            11356898886    22111 1           111111   011245678888865 89999999


Q ss_pred             ehh
Q 014571          406 LTA  408 (422)
Q Consensus       406 ~t~  408 (422)
                      ++.
T Consensus       172 ~~~  174 (292)
T d1xvaa_         172 IDH  174 (292)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            953

>d2q07a1 b.122.1.1 (A:460-527) Uncharacterized protein AF0587 {Archaeoglobus fulgidus [TaxId: 2234]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: PUA domain
domain: Uncharacterized protein AF0587
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=98.47  E-value=3.7e-08  Score=74.20  Aligned_cols=62  Identities=24%  Similarity=0.470  Sum_probs=52.1

Q ss_pred             EEEccccHHHHHcCCccccCceeeccCCccCCCEEEEeeccccccCCCCchhhhhhhcccCCCCCCCcccCCCceEEEEc
Q 014571          126 VIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVSVAVEQPTLDGGWGLGITRGTVLQGSQTDPYYFERSGLYIGQG  205 (422)
Q Consensus       126 ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~~~l~~~~~~p~W~~~~~r~~~~~~~~~~~~~~~~~~v~Vrvg  205 (422)
                      |.||    +.+.+| ++|+|||+++++++++||.|.|.                                  ++..|++|
T Consensus         3 V~id----dfv~~G-~v~apgI~~~d~~I~~GD~V~V~----------------------------------~ge~vavG   43 (68)
T d2q07a1           3 VEIG----DFEVKG-TIFAGGVLRADEKIRPNDVVVFH----------------------------------NSRIFGVG   43 (68)
T ss_dssp             EEEC----SSCCCS-EEEGGGEEEECTTCCTTCEEEEE----------------------------------CSSCEEEE
T ss_pred             EEEC----CcccCC-cccccchhhhCCCCCCCCEEEEE----------------------------------eCCEEEEE
Confidence            4566    367889 99999999999999999999887                                  13479999


Q ss_pred             cCccCHHHHhcccCcceeecc
Q 014571          206 TAMMSRAGIFRASEGIAVDMH  226 (422)
Q Consensus       206 ~a~msreel~~~~~GiaV~~~  226 (422)
                      ++.|+.+||.+..+|++++..
T Consensus        44 ~A~ms~~Em~~~~kG~aVkvR   64 (68)
T d2q07a1          44 LAAMSGKEMAGSEKGIAINVK   64 (68)
T ss_dssp             EESSCHHHHSCC--CEEEEEE
T ss_pred             EEeeCHHHHhhcCCcEEEEEe
Confidence            999999999999999999864

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.1e-07  Score=86.20  Aligned_cols=78  Identities=15%  Similarity=0.046  Sum_probs=64.4

Q ss_pred             cCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcc
Q 014571          257 LDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       257 L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      +...++.+|||++||+|.-+..+++..  ..+|+++|+|+++++.++++++..+..+++++++|++.+..          
T Consensus        56 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~~v~~vD~s~~~l~~ak~~~~~~~~~~~~f~~~d~~~~~~----------  123 (222)
T d2ex4a1          56 PNKTGTSCALDCGAGIGRITKRLLLPL--FREVDMVDITEDFLVQAKTYLGEEGKRVRNYFCCGLQDFTP----------  123 (222)
T ss_dssp             --CCCCSEEEEETCTTTHHHHHTTTTT--CSEEEEEESCHHHHHHHHHHTGGGGGGEEEEEECCGGGCCC----------
T ss_pred             cCCCCCCEEEEeccCCCHhhHHHHHhc--CCEEEEeecCHHHhhcccccccccccccccccccccccccc----------
Confidence            345678999999999999998887553  35899999999999999999999888899999999987532          


Q ss_pred             ccCCCCCCCCCceee
Q 014571          337 MCNSKDNNYITSQTS  351 (422)
Q Consensus       337 ~~~~~~~~~FD~VLv  351 (422)
                           ..+.||.|++
T Consensus       124 -----~~~~fD~I~~  133 (222)
T d2ex4a1         124 -----EPDSYDVIWI  133 (222)
T ss_dssp             -----CSSCEEEEEE
T ss_pred             -----cccccccccc
Confidence                 1357899886

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=98.43  E-value=2.2e-07  Score=87.62  Aligned_cols=89  Identities=13%  Similarity=0.094  Sum_probs=72.8

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      .|.-+-++-.+..+..+.+|||+|||+|..+..++...+..++|+++|+|+.+++.++++++..+. ++++.+.|+..++
T Consensus        12 ~d~l~~l~~~~~~~~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~~~~-~~~f~~~d~~~~~   90 (281)
T d2gh1a1          12 DDYVSFLVNTVWKITKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRLLPY-DSEFLEGDATEIE   90 (281)
T ss_dssp             HHHHHHHHHTTSCCCSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHSSSS-EEEEEESCTTTCC
T ss_pred             HHHHHHHHHHHhccCCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccccccc-ccccccccccccc
Confidence            344455555566778889999999999999999999887678999999999999999999998886 6899999987542


Q ss_pred             hccCCCCCCccccCCCCCCCCCceee
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                      .                .+.||.|++
T Consensus        91 ~----------------~~~fD~v~~  100 (281)
T d2gh1a1          91 L----------------NDKYDIAIC  100 (281)
T ss_dssp             C----------------SSCEEEEEE
T ss_pred             c----------------cCCceEEEE
Confidence            1                245898886

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=98.40  E-value=4.2e-07  Score=81.00  Aligned_cols=119  Identities=16%  Similarity=0.122  Sum_probs=86.4

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESN  332 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~  332 (422)
                      +...|.|++|+.++|+|+|.||.|..|.+.   .|+|+|+|+++..++.+++.    -.+++.+++.+...+..-.... 
T Consensus        10 vl~~l~~~~g~~~vD~T~G~GGhs~~iL~~---~~~viaiD~D~~ai~~a~~~----~~~~~~~~~~~f~~~~~~l~~~-   81 (182)
T d1wg8a2          10 ALDLLAVRPGGVYVDATLGGAGHARGILER---GGRVIGLDQDPEAVARAKGL----HLPGLTVVQGNFRHLKRHLAAL-   81 (182)
T ss_dssp             HHHHHTCCTTCEEEETTCTTSHHHHHHHHT---TCEEEEEESCHHHHHHHHHT----CCTTEEEEESCGGGHHHHHHHT-
T ss_pred             HHHhcCCCCCCEEEEeCCCCcHHHHHHhcc---cCcEEEEhhhhhHHHHHhhc----cccceeEeehHHHHHHHHHHHc-
Confidence            356788999999999999999999999874   68999999999998777653    3467888888776654321111 


Q ss_pred             CCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEe
Q 014571          333 DEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVL  406 (422)
Q Consensus       333 ~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~  406 (422)
                               ..+.+|.||.|-.+|+...     .+|+            +++..++. .|..+.. +..+|.+++
T Consensus        82 ---------~~~~vdgIl~DLGvSs~ql-----d~~~------------re~~~~~~-~L~~~~~~lk~gg~~~i  129 (182)
T d1wg8a2          82 ---------GVERVDGILADLGVSSFHL-----DDPS------------DELNALKE-FLEQAAEVLAPGGRLVV  129 (182)
T ss_dssp             ---------TCSCEEEEEEECSCCHHHH-----HCGG------------THHHHHHH-HHHHHHHHEEEEEEEEE
T ss_pred             ---------CCCccCEEEEEccCCHHHh-----hcch------------HHHHHHHH-HHHHHHhhhCCCCeEEE
Confidence                     1246899999998888776     2221            24555555 6666644 788887775

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=98.39  E-value=3.3e-07  Score=82.86  Aligned_cols=75  Identities=11%  Similarity=0.101  Sum_probs=60.0

Q ss_pred             ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccC-CCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhh
Q 014571          247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLR-DEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALK  323 (422)
Q Consensus       247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~-~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~  323 (422)
                      +.-+.++.+.  .+|+.+|||+|||+|..|..|++.+. +..+|+|+|.|+.+++.++++++..+. .++.....|...
T Consensus        27 ~~i~~~~~~~--~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~~~~~~~~~~~~d~~~  103 (225)
T d1im8a_          27 TAIGMLAERF--VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRH  103 (225)
T ss_dssp             HHHHHHHHHH--CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTSCCSSCEEEECSCTTT
T ss_pred             HHHHHHHHHh--cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhhcccchhhhccchhhc
Confidence            3344444444  46788999999999999999998763 567999999999999999999998875 457777777654

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.39  E-value=4.3e-07  Score=85.95  Aligned_cols=72  Identities=14%  Similarity=0.114  Sum_probs=61.4

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhh
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALK  323 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~  323 (422)
                      =..+...|+++||++|||++||.|+.+.++++..+  .+|+++|+|+..++.+++++++.|+. ++.+...|.+.
T Consensus        41 ~~~~~~~l~l~~g~~VLDiGCG~G~~a~~~a~~~g--~~v~gi~ls~~q~~~a~~~~~~~~l~~~~~~~~~d~~~  113 (280)
T d2fk8a1          41 VDLNLDKLDLKPGMTLLDIGCGWGTTMRRAVERFD--VNVIGLTLSKNQHARCEQVLASIDTNRSRQVLLQGWED  113 (280)
T ss_dssp             HHHHHTTSCCCTTCEEEEESCTTSHHHHHHHHHHC--CEEEEEESCHHHHHHHHHHHHTSCCSSCEEEEESCGGG
T ss_pred             HHHHHHHcCCCCCCEEEEecCCchHHHHHHHHhCc--eeEEEecchHHHHHHHHHHHHhhccccchhhhhhhhhh
Confidence            34567778899999999999999999999988753  58999999999999999999999985 46777667553

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.36  E-value=5.5e-07  Score=85.56  Aligned_cols=77  Identities=18%  Similarity=0.103  Sum_probs=67.0

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKA  324 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~  324 (422)
                      |+---..++..|+++||++|||++||-|+-+.++|+.-  ..+|+++++|+..++.+++++++.|+ .++++...|.+.+
T Consensus        47 Q~~k~~~~~~~l~l~~G~~VLDiGCG~G~~a~~~a~~~--g~~v~git~s~~Q~~~a~~~~~~~g~~~~v~~~~~d~~~~  124 (285)
T d1kpga_          47 QIAKIDLALGKLGLQPGMTLLDVGCGWGATMMRAVEKY--DVNVVGLTLSKNQANHVQQLVANSENLRSKRVLLAGWEQF  124 (285)
T ss_dssp             HHHHHHHHHTTTTCCTTCEEEEETCTTSHHHHHHHHHH--CCEEEEEESCHHHHHHHHHHHHTCCCCSCEEEEESCGGGC
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEecCcchHHHHHHHhcC--CcceEEEeccHHHHHHHHHHHHhhhhhhhhHHHHhhhhcc
Confidence            44445678888999999999999999999999999985  37999999999999999999999887 5689999987654

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=98.30  E-value=1.6e-07  Score=81.66  Aligned_cols=53  Identities=17%  Similarity=0.106  Sum_probs=47.4

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG  310 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g  310 (422)
                      ..|.++||.+|||++||+|.-+..+|+.   ...|+|+|+|+.+++.++++++..+
T Consensus        14 ~~l~~~~~~rvLd~GCG~G~~a~~la~~---G~~V~gvD~S~~~i~~a~~~~~~~~   66 (201)
T d1pjza_          14 SSLNVVPGARVLVPLCGKSQDMSWLSGQ---GYHVVGAELSEAAVERYFTERGEQP   66 (201)
T ss_dssp             HHHCCCTTCEEEETTTCCSHHHHHHHHH---CCEEEEEEECHHHHHHHHHHHCSCS
T ss_pred             HHcCCCCCCEEEEecCcCCHHHHHHHHc---CCceEeecccHHHHHHHHHHhcccc
Confidence            3467899999999999999999999986   4799999999999999999886654

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.28  E-value=1.4e-06  Score=83.38  Aligned_cols=92  Identities=16%  Similarity=0.013  Sum_probs=71.4

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccC----CCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhc
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLR----DEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRR  327 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~----~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~  327 (422)
                      ++..++.++++.+|||.|||+|+....++..+.    ....++|+|+++..++.++.++...+.. ......|....   
T Consensus       108 l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~~~~-~~~~~~d~~~~---  183 (328)
T d2f8la1         108 LLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQRQK-MTLLHQDGLAN---  183 (328)
T ss_dssp             HHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHHTCC-CEEEESCTTSC---
T ss_pred             HHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHhhhh-hhhhccccccc---
Confidence            455667889999999999999999998876543    2458999999999999999998887764 45556664321   


Q ss_pred             cCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571          328 KNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                                   ....+||.|+.+||.+....
T Consensus       184 -------------~~~~~fD~vi~NPPy~~~~~  203 (328)
T d2f8la1         184 -------------LLVDPVDVVISDLPVGYYPD  203 (328)
T ss_dssp             -------------CCCCCEEEEEEECCCSEESC
T ss_pred             -------------cccccccccccCCCCCCCcc
Confidence                         12457999999999977655

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=98.25  E-value=2e-06  Score=77.31  Aligned_cols=100  Identities=19%  Similarity=0.136  Sum_probs=69.0

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      ..++.+|||++||+|..|..+++.   ..+|+|+|.|+.+++.++++    +..+  .+.+|+..++.            
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~giD~s~~~l~~a~~~----~~~~--~~~~~~~~l~~------------   98 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQER---GFEVVLVDPSKEMLEVAREK----GVKN--VVEAKAEDLPF------------   98 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTT---TCEEEEEESCHHHHHHHHHH----TCSC--EEECCTTSCCS------------
T ss_pred             cCCCCEEEEECCCCchhccccccc---ceEEEEeecccccccccccc----cccc--ccccccccccc------------
Confidence            347789999999999999999986   46899999999999998875    3333  45677765421            


Q ss_pred             CCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEehh
Q 014571          339 NSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLTA  408 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t~  408 (422)
                         ..+.||.|++     ...++.           |.++          ..++|+++.. |+.||++++|.
T Consensus        99 ---~~~~fD~ii~-----~~~~~~-----------~~~d----------~~~~l~~i~r~Lk~gG~~ii~~  140 (246)
T d2avna1          99 ---PSGAFEAVLA-----LGDVLS-----------YVEN----------KDKAFSEIRRVLVPDGLLIATV  140 (246)
T ss_dssp             ---CTTCEEEEEE-----CSSHHH-----------HCSC----------HHHHHHHHHHHEEEEEEEEEEE
T ss_pred             ---ccccccceee-----ecchhh-----------hhhh----------HHHHHHHHHhhcCcCcEEEEEE
Confidence               1367999886     222311           2221          1235565654 79999999854

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.25  E-value=1.5e-06  Score=80.81  Aligned_cols=88  Identities=9%  Similarity=-0.031  Sum_probs=67.7

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      +.-++||+|+|+|..+..||.... ..+|+|+|+++..++.+++|+++.++.+ +.++..+........         ..
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~-~~~~~~~Di~~~al~~A~~N~~~n~l~~~~~~~~~~~~~~~~~~---------~~  130 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLN-GWYFLATEVDDMCFNYAKKNVEQNNLSDLIKVVKVPQKTLLMDA---------LK  130 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEECCTTCSSTTT---------ST
T ss_pred             ccceEEEeCCCchHHHHHHHHhCC-CccccceecCHHHHHHHHHHHHHhCCCcceeeeeeccHHhhhhh---------hh
Confidence            445899999999999999999874 5899999999999999999999999865 777766543322110         01


Q ss_pred             CCCCCCCCceeecCCcccc
Q 014571          340 SKDNNYITSQTSDSMKLHK  358 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~  358 (422)
                      ....+.||.|++.||--.+
T Consensus       131 ~~~~~~fD~ivsNPPY~~~  149 (250)
T d2h00a1         131 EESEIIYDFCMCNPPFFAN  149 (250)
T ss_dssp             TCCSCCBSEEEECCCCC--
T ss_pred             hcccCceeEEEecCccccc
Confidence            1235679999999999764

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.22  E-value=9e-07  Score=80.53  Aligned_cols=93  Identities=13%  Similarity=0.140  Sum_probs=73.6

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCC
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNE  330 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~  330 (422)
                      +...++......+||++++|.|.-|+.+|+.++..|+|+++|+++..++.+++++++.|+. +|+++.+|+.........
T Consensus        47 lL~~lv~~~kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~~~gl~~~i~l~~Gd~~e~l~~l~~  126 (214)
T d2cl5a1          47 IMDAVIREYSPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLNFAGLQDKVTILNGASQDLIPQLKK  126 (214)
T ss_dssp             HHHHHHHHHCCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGHHH
T ss_pred             HHHHHHHhhCCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHHHcCCCccceeeeccccccccchhh
Confidence            3333333344569999999999999999999888899999999999999999999999985 499999999876543211


Q ss_pred             CCCCccccCCCCCCCCCceeecC
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDa  353 (422)
                      .         ...+.||.|++|.
T Consensus       127 ~---------~~~~~~D~ifiD~  140 (214)
T d2cl5a1         127 K---------YDVDTLDMVFLDH  140 (214)
T ss_dssp             H---------SCCCCEEEEEECS
T ss_pred             c---------ccccccceeeecc
Confidence            0         0135699999983

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.21  E-value=2.9e-06  Score=79.94  Aligned_cols=121  Identities=14%  Similarity=0.045  Sum_probs=84.4

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      +..+|+|+|+|.|.-++.+++.  +..+|+|+|+|+.-++.+++|++++|+.+ +.+...|......             
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~--~~~~v~a~Dis~~Al~~A~~Na~~~~~~~~~~i~~~~~~~~~~-------------  174 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKF--SDAIVFATDVSSKAVEIARKNAERHGVSDRFFVRKGEFLEPFK-------------  174 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH--SSCEEEEEESCHHHHHHHHHHHHHTTCTTSEEEEESSTTGGGG-------------
T ss_pred             cccEEEEeeeeeehhhhhhhhc--ccceeeechhhhhHHHHHHHHHHHcCCCceeEEeecccccccc-------------
Confidence            3458999999999999998864  56899999999999999999999999865 6677777654321             


Q ss_pred             CCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCccc---chhHHHHHHHHHHhccceeccEEEe
Q 014571          340 SKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTC---GECGMAQEEINALVVGLRIQKVLVL  406 (422)
Q Consensus       340 ~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~---~~l~~~Q~~IL~~a~~lr~~~~~~~  406 (422)
                       ...++||.|+.+||.-.+..     ..|... .|.|...-+   .-+ ..=++|+.+  -++.+|.+++
T Consensus       175 -~~~~~fDlIVsNPPYI~~~~-----~l~~~~-~~EP~~AL~gg~dGl-~~~r~i~~~--~L~~~G~l~~  234 (271)
T d1nv8a_         175 -EKFASIEMILSNPPYVKSSA-----HLPKDV-LFEPPEALFGGEDGL-DFYREFFGR--YDTSGKIVLM  234 (271)
T ss_dssp             -GGTTTCCEEEECCCCBCGGG-----SCTTSC-CCSCHHHHBCTTTSC-HHHHHHHHH--CCCTTCEEEE
T ss_pred             -cccCcccEEEEcccccCccc-----ccceee-eeccccccccccchH-HHHHHHHHH--hcCCCCEEEE
Confidence             11367999999999997543     123222 244321100   012 133446654  3788999888

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=98.19  E-value=1.3e-06  Score=81.50  Aligned_cols=90  Identities=16%  Similarity=0.060  Sum_probs=73.4

Q ss_pred             HHHHHHhcCCCCC--CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC---------cceEEEe
Q 014571          250 SIVTAHALDPQKG--ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL---------KCITTYK  318 (422)
Q Consensus       250 S~lv~~~L~p~pg--~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~---------~nv~~~~  318 (422)
                      .+..+.++..+++  .+|||++||-|.-++.+|.+   .++|+++|.++.....++++++++..         .++++++
T Consensus        75 ~~~l~kA~gl~~~~~~~VlD~TaGlG~Da~vlA~~---G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~  151 (250)
T d2oyra1          75 GEAVAKAVGIKGDYLPDVVDATAGLGRDAFVLASV---GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIH  151 (250)
T ss_dssp             GSHHHHHTTCBTTBCCCEEETTCTTCHHHHHHHHH---TCCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEE
T ss_pred             hhHHHHHhcCCCCCCCEEEECCCcccHHHHHHHhC---CCEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeec
Confidence            3456777777765  48999999999999999987   36899999999999999999888642         3799999


Q ss_pred             cchhhhhhccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          319 LDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       319 ~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      +|+..+....              ...||.|.+||+--
T Consensus       152 ~Ds~~~L~~~--------------~~~~DvIYlDPMFp  175 (250)
T d2oyra1         152 ASSLTALTDI--------------TPRPQVVYLDPMFP  175 (250)
T ss_dssp             SCHHHHSTTC--------------SSCCSEEEECCCCC
T ss_pred             CcHHHHHhcc--------------CCCCCEEEECCCCc
Confidence            9998875321              34589999999764

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.18  E-value=3.1e-06  Score=78.09  Aligned_cols=117  Identities=15%  Similarity=0.112  Sum_probs=86.8

Q ss_pred             eChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhh
Q 014571          246 QNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKA  324 (422)
Q Consensus       246 Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~  324 (422)
                      +......++..++..+..+|||++||+|..+..+++.. +..+++++|. +..++.+++++...|+ .+++++.+|....
T Consensus        65 ~~~~~~~~~~~~d~~~~~~VLDvGcG~G~~~~~la~~~-p~~~~~~~D~-~~~~~~a~~~~~~~~~~~rv~~~~~D~~~~  142 (253)
T d1tw3a2          65 QDVAFDAPAAAYDWTNVRHVLDVGGGKGGFAAAIARRA-PHVSATVLEM-AGTVDTARSYLKDEGLSDRVDVVEGDFFEP  142 (253)
T ss_dssp             TTTTTHHHHHHSCCTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-TTHHHHHHHHHHHTTCTTTEEEEECCTTSC
T ss_pred             HHHHHHHHHhhcCCccCCEEEEeCCCCCHHHHHHHHhc-ceeEEEEccC-HHHHHHHHHHHHHhhcccchhhccccchhh
Confidence            34444556677888888999999999999999999986 4679999998 6789999999999987 5699999997532


Q ss_pred             hhccCCCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccE
Q 014571          325 VRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKV  403 (422)
Q Consensus       325 ~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~  403 (422)
                      .                 ...||.|++    +.  .          .+.|...         -..+||+++.. |+.+|.
T Consensus       143 ~-----------------~~~~D~v~~----~~--v----------lh~~~d~---------~~~~~L~~~~~~LkPGG~  180 (253)
T d1tw3a2         143 L-----------------PRKADAIIL----SF--V----------LLNWPDH---------DAVRILTRCAEALEPGGR  180 (253)
T ss_dssp             C-----------------SSCEEEEEE----ES--C----------GGGSCHH---------HHHHHHHHHHHTEEEEEE
T ss_pred             c-----------------ccchhheee----cc--c----------cccCCch---------hhHHHHHHHHHhcCCCcE
Confidence            1                 234788875    11  1          1124321         22467887754 899998


Q ss_pred             EEe
Q 014571          404 LVL  406 (422)
Q Consensus       404 ~~~  406 (422)
                      +++
T Consensus       181 l~i  183 (253)
T d1tw3a2         181 ILI  183 (253)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            887

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.12  E-value=2.1e-06  Score=76.59  Aligned_cols=129  Identities=13%  Similarity=-0.076  Sum_probs=83.3

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccC
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKN  329 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~  329 (422)
                      +.+.+.++.+++|++|||.|||+|+.+..+.+.+.....++++|+++..+..         .....+.++|.....    
T Consensus         8 ~~~m~~l~~~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~---------~~~~~~~~~~~~~~~----   74 (223)
T d2ih2a1           8 VDFMVSLAEAPRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDL---------PPWAEGILADFLLWE----   74 (223)
T ss_dssp             HHHHHHHCCCCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCC---------CTTEEEEESCGGGCC----
T ss_pred             HHHHHHhcCCCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhh---------cccceeeeeehhccc----
Confidence            3566778899999999999999999999998888777899999999764322         123456667754421    


Q ss_pred             CCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCcccccc-----CcccchhHHHHHHHHHHhcc-ceeccE
Q 014571          330 ESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEK-----GRTCGECGMAQEEINALVVG-LRIQKV  403 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~-----~~~~~~l~~~Q~~IL~~a~~-lr~~~~  403 (422)
                                  ....||.|+.++|......   ....+.........     .........++...+.++.. ++.+|.
T Consensus        75 ------------~~~~fd~ii~npP~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~al~~lk~~G~  139 (223)
T d2ih2a1          75 ------------PGEAFDLILGNPPYGIVGE---ASKYPIHVFKAVKDLYKKAFSTWKGKYNLYGAFLEKAVRLLKPGGV  139 (223)
T ss_dssp             ------------CSSCEEEEEECCCCCCBSC---TTTCSBCCCHHHHHHHHHHCTTCCTTCCHHHHHHHHHHHHEEEEEE
T ss_pred             ------------cccccceecccCccccccc---cccccchhhhhhhhhhhhccccCCCcchHHHHHHHHHHHhcccCCc
Confidence                        1356899999999977665   22222221111100     00001222356667777755 667776


Q ss_pred             EEe
Q 014571          404 LVL  406 (422)
Q Consensus       404 ~~~  406 (422)
                      +++
T Consensus       140 ~~~  142 (223)
T d2ih2a1         140 LVF  142 (223)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            655

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.2e-06  Score=77.20  Aligned_cols=98  Identities=16%  Similarity=0.095  Sum_probs=78.1

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKN  329 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~  329 (422)
                      ++...+.......+||+++++.|--|..+|+.+..+|+|+++|.++...+.+++++++.|+.+ +++..+|+........
T Consensus        49 ~lL~~L~~~~~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~ag~~~~i~~~~Gda~e~l~~~~  128 (219)
T d2avda1          49 QLLANLARLIQAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELL  128 (219)
T ss_dssp             HHHHHHHHHTTCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHccCCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhcCccceEEEEEeehhhcchhhh
Confidence            444455555566799999999999999999999888999999999999999999999999855 9999999987654321


Q ss_pred             CCCCCccccCCCCCCCCCceeecCCccc
Q 014571          330 ESNDEPNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                      ..         ...+.||.|++|+-=+.
T Consensus       129 ~~---------~~~~~fD~ifiD~dk~~  147 (219)
T d2avda1         129 AA---------GEAGTFDVAVVDADKEN  147 (219)
T ss_dssp             HT---------TCTTCEEEEEECSCSTT
T ss_pred             hh---------cccCCccEEEEeCCHHH
Confidence            11         12457999999975443

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=98.08  E-value=3e-06  Score=79.09  Aligned_cols=72  Identities=18%  Similarity=0.129  Sum_probs=59.2

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      +.++.+|||++||+|..+.++++.. +...++++|+|+.+++.++++     ..++.+.++|+..++..           
T Consensus        82 ~~~~~~iLDiGcG~G~~~~~l~~~~-~~~~~~giD~s~~~~~~a~~~-----~~~~~~~~~d~~~l~~~-----------  144 (268)
T d1p91a_          82 DDKATAVLDIGCGEGYYTHAFADAL-PEITTFGLDVSKVAIKAAAKR-----YPQVTFCVASSHRLPFS-----------  144 (268)
T ss_dssp             CTTCCEEEEETCTTSTTHHHHHHTC-TTSEEEEEESCHHHHHHHHHH-----CTTSEEEECCTTSCSBC-----------
T ss_pred             CCCCCEEEEeCCCCcHHHHHHHHHC-CCCEEEEecchHhhhhhhhcc-----cccccceeeehhhccCC-----------
Confidence            5678899999999999999999986 457999999999999887764     35789999999876432           


Q ss_pred             CCCCCCCCCceee
Q 014571          339 NSKDNNYITSQTS  351 (422)
Q Consensus       339 ~~~~~~~FD~VLv  351 (422)
                          .+.||.|++
T Consensus       145 ----~~sfD~v~~  153 (268)
T d1p91a_         145 ----DTSMDAIIR  153 (268)
T ss_dssp             ----TTCEEEEEE
T ss_pred             ----CCCEEEEee
Confidence                356898884

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=98.04  E-value=1.5e-06  Score=77.02  Aligned_cols=84  Identities=17%  Similarity=0.164  Sum_probs=60.6

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCcccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMC  338 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~  338 (422)
                      .+++.+|||+||||||.+..+++.+++.+.|+++|..+-           ..++++.++++|...........       
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~~-----------~~i~~~~~~~~d~~~~~~~~~~~-------   81 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLPM-----------DPIVGVDFLQGDFRDELVMKALL-------   81 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSCC-----------CCCTTEEEEESCTTSHHHHHHHH-------
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeecccc-----------cccCCceEeecccccchhhhhhh-------
Confidence            478999999999999999999998888899999998752           13577899999876533211100       


Q ss_pred             CCCCCCCCCceeecCCccccCc
Q 014571          339 NSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       339 ~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      .......||.|+.|.----+|.
T Consensus        82 ~~~~~~~~DlVlSD~ap~~sg~  103 (180)
T d1ej0a_          82 ERVGDSKVQVVMSDMAPNMSGT  103 (180)
T ss_dssp             HHHTTCCEEEEEECCCCCCCSC
T ss_pred             hhccCcceeEEEecccchhccc
Confidence            0112456999999965444444

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.03  E-value=3.6e-06  Score=76.31  Aligned_cols=70  Identities=14%  Similarity=0.017  Sum_probs=56.3

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-----------------CcceE
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-----------------LKCIT  315 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-----------------~~nv~  315 (422)
                      ....+.+.+|.+|||++||.|.-+..||+.   ...|+|+|.|+..++.++++....+                 ..++.
T Consensus        37 ~~~~l~~~~~~rvLd~GCG~G~~a~~LA~~---G~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  113 (229)
T d2bzga1          37 LDTFLKGKSGLRVFFPLCGKAVEMKWFADR---GHSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNIS  113 (229)
T ss_dssp             HHHHHTTCCSCEEEETTCTTCTHHHHHHHT---TCEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEE
T ss_pred             HHHhcCCCCCCEEEEeCCCCcHHHHHHHhC---CCcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEE
Confidence            345677889999999999999999999986   4689999999999999888755321                 13578


Q ss_pred             EEecchhhhh
Q 014571          316 TYKLDALKAV  325 (422)
Q Consensus       316 ~~~~Da~~~~  325 (422)
                      ++++|.....
T Consensus       114 ~~~~d~~~l~  123 (229)
T d2bzga1         114 LYCCSIFDLP  123 (229)
T ss_dssp             EEESCGGGGG
T ss_pred             EEEcchhhcc
Confidence            8888877654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=97.97  E-value=7.5e-06  Score=75.77  Aligned_cols=83  Identities=16%  Similarity=0.033  Sum_probs=64.4

Q ss_pred             HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccC
Q 014571          250 SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKN  329 (422)
Q Consensus       250 S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~  329 (422)
                      |......+.+.++.+|||++||+|..|.+++....  ..|+++|.++.+++.+++++.  +.+++++++.|...+..   
T Consensus        82 s~~fl~~l~~~~~~~vLD~GcG~G~~t~~ll~~~~--~~v~~vD~s~~~l~~a~~~~~--~~~~~~~~~~d~~~~~~---  154 (254)
T d1xtpa_          82 SRNFIASLPGHGTSRALDCGAGIGRITKNLLTKLY--ATTDLLEPVKHMLEEAKRELA--GMPVGKFILASMETATL---  154 (254)
T ss_dssp             HHHHHHTSTTCCCSEEEEETCTTTHHHHHTHHHHC--SEEEEEESCHHHHHHHHHHTT--TSSEEEEEESCGGGCCC---
T ss_pred             HHHHHhhCCCCCCCeEEEecccCChhhHHHHhhcC--ceEEEEcCCHHHHHhhhcccc--ccccceeEEcccccccc---
Confidence            34444566677889999999999999999887542  489999999999999998764  34568999999876532   


Q ss_pred             CCCCCccccCCCCCCCCCceee
Q 014571          330 ESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                                  ..+.||.|++
T Consensus       155 ------------~~~~fD~I~~  164 (254)
T d1xtpa_         155 ------------PPNTYDLIVI  164 (254)
T ss_dssp             ------------CSSCEEEEEE
T ss_pred             ------------CCCccceEEe
Confidence                        1356898887

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.95  E-value=4.9e-06  Score=76.35  Aligned_cols=97  Identities=14%  Similarity=0.110  Sum_probs=77.0

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc-eEEEecchhhhhhccC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC-ITTYKLDALKAVRRKN  329 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n-v~~~~~Da~~~~~~~~  329 (422)
                      ++...++......+||+++++.|--|..+|+.++..|+|+++|.++...+.+++++++.|+.+ |+++.+|+........
T Consensus        49 ~~L~~L~~~~~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~g~~~~i~~~~g~a~~~L~~l~  128 (227)
T d1susa1          49 QFLSMLLKLINAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMI  128 (227)
T ss_dssp             HHHHHHHHHHTCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHhccccceeeeehHHHHHHHHHH
Confidence            344444444556799999999999999999999888999999999999999999999999854 9999999987654321


Q ss_pred             CCCCCccccCCCCCCCCCceeecCCc
Q 014571          330 ESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      ..        ....+.||.|++|+-=
T Consensus       129 ~~--------~~~~~~fD~iFiDa~k  146 (227)
T d1susa1         129 KD--------EKNHGSYDFIFVDADK  146 (227)
T ss_dssp             HC--------GGGTTCBSEEEECSCS
T ss_pred             hc--------cccCCceeEEEeccch
Confidence            10        0124579999999843

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=97.85  E-value=2.6e-05  Score=72.11  Aligned_cols=113  Identities=19%  Similarity=0.071  Sum_probs=82.7

Q ss_pred             HHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccC
Q 014571          251 IVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKN  329 (422)
Q Consensus       251 ~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~  329 (422)
                      ..++..++..+..+|||++||+|..+..+++.. +..+++++|+ +..++.++++++..|.. ++.++.+|.....    
T Consensus        71 ~~~~~~~d~~~~~~vlDvG~G~G~~~~~l~~~~-P~~~~~~~Dl-p~~~~~a~~~~~~~~~~~ri~~~~~d~~~~~----  144 (256)
T d1qzza2          71 EAPADAYDWSAVRHVLDVGGGNGGMLAAIALRA-PHLRGTLVEL-AGPAERARRRFADAGLADRVTVAEGDFFKPL----  144 (256)
T ss_dssp             HHHHHTSCCTTCCEEEEETCTTSHHHHHHHHHC-TTCEEEEEEC-HHHHHHHHHHHHHTTCTTTEEEEECCTTSCC----
T ss_pred             HHHHhcCCCccCCEEEEECCCCCHHHHHHHHhh-cCcEEEEecC-hHHHHHHHHHHhhcCCcceeeeeeeeccccc----
Confidence            344556677778899999999999999999985 4689999997 78899999999999874 5888888765311    


Q ss_pred             CCCCCccccCCCCCCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhcc-ceeccEEEeh
Q 014571          330 ESNDEPNMCNSKDNNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVG-LRIQKVLVLT  407 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~-lr~~~~~~~t  407 (422)
                                   +..||.|++     . ..          .+.|...         -..+||+++.. ++.+|.++++
T Consensus       145 -------------p~~~D~v~~-----~-~v----------Lh~~~d~---------~~~~lL~~i~~~LkpgG~llI~  185 (256)
T d1qzza2         145 -------------PVTADVVLL-----S-FV----------LLNWSDE---------DALTILRGCVRALEPGGRLLVL  185 (256)
T ss_dssp             -------------SCCEEEEEE-----E-SC----------GGGSCHH---------HHHHHHHHHHHHEEEEEEEEEE
T ss_pred             -------------cccchhhhc-----c-cc----------ccccCcH---------HHHHHHHHHHhhcCCcceeEEE
Confidence                         233787776     1 11          1234422         34577888855 8999988873

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.83  E-value=2.1e-05  Score=74.42  Aligned_cols=80  Identities=18%  Similarity=0.064  Sum_probs=60.2

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCC
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESND  333 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~  333 (422)
                      +.....+|.+|||++||+|..+..+|+.  +..+|+|+|.++.... ++++.++.|. .+|.++.+|+.....       
T Consensus        29 ~~~~~~~~~~VLDiGcG~G~lsl~aa~~--Ga~~V~aid~s~~~~~-a~~~~~~~~~~~~i~~~~~~~~~l~~-------   98 (311)
T d2fyta1          29 QNPHIFKDKVVLDVGCGTGILSMFAAKA--GAKKVLGVDQSEILYQ-AMDIIRLNKLEDTITLIKGKIEEVHL-------   98 (311)
T ss_dssp             HCGGGTTTCEEEEETCTTSHHHHHHHHT--TCSEEEEEESSTHHHH-HHHHHHHTTCTTTEEEEESCTTTSCC-------
T ss_pred             hccccCCcCEEEEECCCCCHHHHHHHHc--CCCEEEEEeCHHHHHH-HHHHHHHhCCCccceEEEeeHHHhcC-------
Confidence            3345568999999999999999988886  2358999999998654 5555566664 679999999876532       


Q ss_pred             CccccCCCCCCCCCceeec
Q 014571          334 EPNMCNSKDNNYITSQTSD  352 (422)
Q Consensus       334 ~~~~~~~~~~~~FD~VLvD  352 (422)
                              ...+||.|+++
T Consensus        99 --------~~~~~D~Ivse  109 (311)
T d2fyta1          99 --------PVEKVDVIISE  109 (311)
T ss_dssp             --------SCSCEEEEEEC
T ss_pred             --------ccccceEEEEe
Confidence                    13568988864

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=97.82  E-value=9.3e-06  Score=73.19  Aligned_cols=71  Identities=13%  Similarity=0.035  Sum_probs=55.3

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      .-..+.+|||++||+|..+..+++.   ..+|+|+|+|+.+++.++++..    .++.++.+|.....            
T Consensus        17 ~~~~~~~VLDiGcG~G~~~~~l~~~---g~~v~giD~s~~~i~~a~~~~~----~~~~~~~~~~~~~~------------   77 (225)
T d2p7ia1          17 PFFRPGNLLELGSFKGDFTSRLQEH---FNDITCVEASEEAISHAQGRLK----DGITYIHSRFEDAQ------------   77 (225)
T ss_dssp             GGCCSSCEEEESCTTSHHHHHHTTT---CSCEEEEESCHHHHHHHHHHSC----SCEEEEESCGGGCC------------
T ss_pred             hhCCCCcEEEEeCCCcHHHHHHHHc---CCeEEEEeCcHHHhhhhhcccc----cccccccccccccc------------
Confidence            3345779999999999999988876   2479999999999999986532    47889988876532            


Q ss_pred             cCCCCCCCCCceee
Q 014571          338 CNSKDNNYITSQTS  351 (422)
Q Consensus       338 ~~~~~~~~FD~VLv  351 (422)
                          ..++||.|++
T Consensus        78 ----~~~~fD~I~~   87 (225)
T d2p7ia1          78 ----LPRRYDNIVL   87 (225)
T ss_dssp             ----CSSCEEEEEE
T ss_pred             ----cccccccccc
Confidence                1356898885

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.81  E-value=3e-05  Score=76.81  Aligned_cols=104  Identities=14%  Similarity=0.135  Sum_probs=77.8

Q ss_pred             ceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCC------------cEEEEEcCChHHHHHHHHHHHH
Q 014571          241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE------------GEVVAVDRSHNKVMDIQKLAAE  308 (422)
Q Consensus       241 G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~------------g~V~A~D~s~~rl~~l~~~l~r  308 (422)
                      |.||--..-+.+.+.+++|+++++|+|-|||+||..+.+.+.+...            ..+++.|+++.....++-|+--
T Consensus       142 G~f~TP~~Iv~~mv~ll~~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l  221 (425)
T d2okca1         142 GQYFTPRPLIQAMVDCINPQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL  221 (425)
T ss_dssp             GGGCCCHHHHHHHHHHHCCCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH
T ss_pred             hhhccchhhhHhhheeccCcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhh
Confidence            4443333344667788999999999999999999999988876432            2499999999999999999888


Q ss_pred             hCCc--ceEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571          309 MGLK--CITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       309 ~g~~--nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      .|..  +..+...|....                .....||.|+..||=+....
T Consensus       222 ~g~~~~~~~i~~~d~l~~----------------~~~~~fD~Ii~NPPfg~~~~  259 (425)
T d2okca1         222 HGIGTDRSPIVCEDSLEK----------------EPSTLVDVILANPPFGTRPA  259 (425)
T ss_dssp             TTCCSSCCSEEECCTTTS----------------CCSSCEEEEEECCCSSCCCT
T ss_pred             cCCccccceeecCchhhh----------------hcccccceEEecCCCCCCcc
Confidence            7763  345566665421                12457999999999976544

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=3.4e-05  Score=73.96  Aligned_cols=73  Identities=12%  Similarity=0.089  Sum_probs=60.2

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH-------hCC--cceEEEecchhh
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE-------MGL--KCITTYKLDALK  323 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r-------~g~--~nv~~~~~Da~~  323 (422)
                      +...++++++++|||++||.|.-+.++|...+ ..+++|+|+++.+++.++++++.       .|.  .+|+++++|+..
T Consensus       143 ~~~~~~l~~~~~vlD~GcG~G~~~~~~a~~~~-~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~  221 (328)
T d1nw3a_         143 MIDEIKMTDDDLFVDLGSGVGQVVLQVAAATN-CKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLS  221 (328)
T ss_dssp             HHHHSCCCTTCEEEEETCTTSHHHHHHHHHCC-CSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTS
T ss_pred             HHHHcCCCCCCEEEEcCCCCCHHHHHHHHHhC-CCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccc
Confidence            34677899999999999999999999998754 46899999999999888776655       343  579999999987


Q ss_pred             hhh
Q 014571          324 AVR  326 (422)
Q Consensus       324 ~~~  326 (422)
                      .+.
T Consensus       222 ~~~  224 (328)
T d1nw3a_         222 EEW  224 (328)
T ss_dssp             HHH
T ss_pred             ccc
Confidence            653

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=2.5e-05  Score=74.33  Aligned_cols=78  Identities=17%  Similarity=0.059  Sum_probs=60.6

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc-ceEEEecchhhhhhccCCCCCCccc
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK-CITTYKLDALKAVRRKNESNDEPNM  337 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~-nv~~~~~Da~~~~~~~~~~~~~~~~  337 (422)
                      ..+|.+|||++||+|.-+..+|+. + ..+|+|+|.++. ...+++++++.|+. +|.++++|+.....           
T Consensus        31 ~~~~~~VLDiGcG~G~ls~~aa~~-G-a~~V~avd~s~~-~~~a~~~~~~n~~~~~v~~~~~~~~~~~~-----------   96 (316)
T d1oria_          31 LFKDKVVLDVGSGTGILCMFAAKA-G-ARKVIGIECSSI-SDYAVKIVKANKLDHVVTIIKGKVEEVEL-----------   96 (316)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHT-T-CSEEEEEECSTT-HHHHHHHHHHTTCTTTEEEEESCTTTCCC-----------
T ss_pred             cCCcCEEEEEecCCcHHHHHHHHh-C-CCEEEEEcCcHH-HhhhhhHHHHhCCccccceEeccHHHccc-----------
Confidence            347999999999999998888875 3 348999999974 67778888888874 59999999876532           


Q ss_pred             cCCCCCCCCCceeecCC
Q 014571          338 CNSKDNNYITSQTSDSM  354 (422)
Q Consensus       338 ~~~~~~~~FD~VLvDaP  354 (422)
                          ..++||.|+++..
T Consensus        97 ----~~~~~D~ivs~~~  109 (316)
T d1oria_          97 ----PVEKVDIIISEWM  109 (316)
T ss_dssp             ----SSSCEEEEEECCC
T ss_pred             ----ccceeEEEeeeee
Confidence                1356898887644

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.76  E-value=2.9e-05  Score=74.18  Aligned_cols=78  Identities=19%  Similarity=0.092  Sum_probs=61.5

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhhhccCCCCCCcc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      ...+|.+|||++||+|..+..+|+.  +..+|+|+|.++ ++..++++.+..|. .++.++.+|......          
T Consensus        35 ~~~~~~~VLDlGcGtG~ls~~aa~~--Ga~~V~avd~s~-~~~~a~~~~~~~~~~~~i~~i~~~~~~l~~----------  101 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGTGILSMFAAKH--GAKHVIGVDMSS-IIEMAKELVELNGFSDKITLLRGKLEDVHL----------  101 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHT--CCSEEEEEESST-HHHHHHHHHHHTTCTTTEEEEESCTTTSCC----------
T ss_pred             ccCCcCEEEEeCCCCCHHHHHHHHh--CCCEEEEEeCCH-HHHHHHHHHHHhCccccceEEEeehhhccC----------
Confidence            3457999999999999999888876  235899999995 78889999999887 469999998876432          


Q ss_pred             ccCCCCCCCCCceeecC
Q 014571          337 MCNSKDNNYITSQTSDS  353 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDa  353 (422)
                           ...+||.|+++.
T Consensus       102 -----~~~~~D~i~se~  113 (328)
T d1g6q1_         102 -----PFPKVDIIISEW  113 (328)
T ss_dssp             -----SSSCEEEEEECC
T ss_pred             -----cccceeEEEEEe
Confidence                 135689888743

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.72  E-value=1.9e-05  Score=77.46  Aligned_cols=81  Identities=17%  Similarity=0.030  Sum_probs=65.5

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc---------------eEEEecchhhhh
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC---------------ITTYKLDALKAV  325 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n---------------v~~~~~Da~~~~  325 (422)
                      .+.+|||+.||+|..++..|.-.+ ..+|+++|+|+.-++.+++|++..|..+               +.+.+.|+....
T Consensus        45 ~~~~vLD~~sasG~rsiRya~E~~-~~~V~~nDis~~A~~~i~~N~~lN~~~~~~~~~~~~~~~~~~~~~~~~~Da~~~~  123 (375)
T d2dula1          45 NPKIVLDALSATGIRGIRFALETP-AEEVWLNDISEDAYELMKRNVMLNFDGELRESKGRAILKGEKTIVINHDDANRLM  123 (375)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSS-CSEEEEEESCHHHHHHHHHHHHHHCCSCCEECSSEEEEESSSEEEEEESCHHHHH
T ss_pred             CCCEEEEcCCCccHHHHHHHHhCC-CCEEEEecCCHHHHHHHHHHHHhcCccccccccccccccccceeEeehhhhhhhh
Confidence            567999999999999999887654 4589999999999999999999987643               667777877654


Q ss_pred             hccCCCCCCccccCCCCCCCCCceeecCCcc
Q 014571          326 RRKNESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       326 ~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                      ..              ....||.|-+||.=|
T Consensus       124 ~~--------------~~~~fDvIDiDPfGs  140 (375)
T d2dula1         124 AE--------------RHRYFHFIDLDPFGS  140 (375)
T ss_dssp             HH--------------STTCEEEEEECCSSC
T ss_pred             Hh--------------hcCcCCcccCCCCCC
Confidence            32              145699999998533

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=97.65  E-value=2e-05  Score=69.46  Aligned_cols=63  Identities=11%  Similarity=-0.000  Sum_probs=49.5

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCN  339 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~  339 (422)
                      .|+.+|||++||+|..+..++       +++++|.|+.+++.++++       ++.++++|+..++.             
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~-------~~~giD~s~~~~~~a~~~-------~~~~~~~d~~~l~~-------------   87 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK-------IKIGVEPSERMAEIARKR-------GVFVLKGTAENLPL-------------   87 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT-------CCEEEESCHHHHHHHHHT-------TCEEEECBTTBCCS-------------
T ss_pred             CCCCeEEEECCCCcccccccc-------eEEEEeCChhhccccccc-------cccccccccccccc-------------
Confidence            457799999999998877663       368999999999988763       68899999876532             


Q ss_pred             CCCCCCCCceee
Q 014571          340 SKDNNYITSQTS  351 (422)
Q Consensus       340 ~~~~~~FD~VLv  351 (422)
                        ..+.||.|++
T Consensus        88 --~~~~fD~I~~   97 (208)
T d1vlma_          88 --KDESFDFALM   97 (208)
T ss_dssp             --CTTCEEEEEE
T ss_pred             --cccccccccc
Confidence              1356898875

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=97.61  E-value=7.5e-05  Score=68.47  Aligned_cols=69  Identities=12%  Similarity=0.106  Sum_probs=59.7

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      -.+..++++++++||++++|+|.-|..|++.   ..+|+|+|+++..++.++++..  +.+|++++.+|+.++.
T Consensus        12 ~iv~~~~~~~~d~VlEIGpG~G~LT~~Ll~~---~~~v~avE~D~~l~~~l~~~~~--~~~n~~i~~~D~l~~~   80 (235)
T d1qama_          12 KIMTNIRLNEHDNIFEIGSGKGHFTLELVQR---CNFVTAIEIDHKLCKTTENKLV--DHDNFQVLNKDILQFK   80 (235)
T ss_dssp             HHHTTCCCCTTCEEEEECCTTSHHHHHHHHH---SSEEEEECSCHHHHHHHHHHTT--TCCSEEEECCCGGGCC
T ss_pred             HHHHhcCCCCCCeEEEECCCchHHHHHHHhC---cCceEEEeeccchHHHHHHHhh--cccchhhhhhhhhhcc
Confidence            3567778999999999999999999999987   3689999999999999988653  4578999999998864

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=0.00011  Score=69.16  Aligned_cols=105  Identities=14%  Similarity=0.140  Sum_probs=73.2

Q ss_pred             HHHHHHHHhchhhHHHHHHHhcCCCCccEEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccccccCCCccccccCCC
Q 014571           19 VEEYFIRAYGADHFSRISKALTRPSCYSCIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVKGRLQNGTISESQIPG   98 (422)
Q Consensus        19 v~~~l~~~~~~~~~~~~~~~l~~pp~~~~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   98 (422)
                      +.+.+.+.||. ++.++++++..||. .++||||+|++++++++.|.+.         |             +...+++.
T Consensus         5 Lv~~~~~~~ge-e~~~l~~a~~~~~p-~~lRvN~~k~s~~~~~~~L~~~---------g-------------i~~~~~~~   60 (284)
T d1sqga2           5 LLKRLQKAYPE-QWQSIVEANNQRPP-MWLRINRTHHSRDSWLALLDEA---------G-------------MKGFPHAD   60 (284)
T ss_dssp             HHHHHHHHCTT-THHHHHHHHTSCCC-EEEEECTTTCCHHHHHHHHHHT---------T-------------CCEECCTT
T ss_pred             HHHHHHHHCHH-HHHHHHHHCCCCCC-eEEEECCCCCCHHHHHHHHHhc---------C-------------CceeecCC
Confidence            56778888985 59999999999986 4799999999999999988755         3             45567888


Q ss_pred             CCcEEEEeCCCCcccCCCCCCCCCCCEEEEccccHHHHHcCCccccCceeeccCCccCCCEEEEe
Q 014571           99 LEYVVFVKGSGPHTIDYGYEPDKPPKEVIVSRKCAEAVLRGAQVYVPGVMACSSHVEKGDVVAVS  163 (422)
Q Consensus        99 l~~~l~~~~~gp~~~~~~~~~~~~~k~ViVd~~~~eaVlrGA~v~~PGil~~~~~~~~gd~V~v~  163 (422)
                      +++.+.++..++..-.    +....-.+.|...+...+..        ++    ..++|+.|-..
T Consensus        61 ~p~~l~l~~~~~l~~~----~~~~~G~~~vQD~sS~l~~~--------~L----~~~~g~~vLD~  109 (284)
T d1sqga2          61 YPDAVRLETPAPVHAL----PGFEDGWVTVQDASAQGCMT--------WL----APQNGEHILDL  109 (284)
T ss_dssp             CTTEEEESSCCCGGGS----TTGGGTSEEECCHHHHTHHH--------HH----CCCTTCEEEEE
T ss_pred             CCccceeccccchhhC----hhhhccEEEecccccccccc--------cc----CccccceeEec
Confidence            9999999776554311    11233445555544333321        11    34678877766

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=6.9e-05  Score=74.13  Aligned_cols=57  Identities=11%  Similarity=0.010  Sum_probs=50.3

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG  310 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g  310 (422)
                      +...++++||++|||++||.|+-+.++|...+ .++|+|+|+++.+++.++++++.++
T Consensus       208 Il~~l~Lkpgd~fLDLGCG~G~~vl~aA~~~g-~~~v~GIDiS~~~i~~Ak~~~~e~~  264 (406)
T d1u2za_         208 VYQQCQLKKGDTFMDLGSGVGNCVVQAALECG-CALSFGCEIMDDASDLTILQYEELK  264 (406)
T ss_dssp             HHHHTTCCTTCEEEEESCTTSHHHHHHHHHHC-CSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCCEEEeCCCCCcHHHHHHHHHcC-CCeEEEEeCCHHHHHHHHHHHHHHh
Confidence            34667899999999999999999999998865 3689999999999999999988754

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.37  E-value=0.0001  Score=68.02  Aligned_cols=85  Identities=18%  Similarity=0.126  Sum_probs=56.6

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccC-----CCcEEEEEcCChHHHHHHHHHHHHhC-CcceEE--EecchhhhhhccC
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLR-----DEGEVVAVDRSHNKVMDIQKLAAEMG-LKCITT--YKLDALKAVRRKN  329 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~-----~~g~V~A~D~s~~rl~~l~~~l~r~g-~~nv~~--~~~Da~~~~~~~~  329 (422)
                      ..+++.+|||++||+|..|..|+..+.     ....++++|.|+.+++.+++++++.. +.++.+  ...++........
T Consensus        37 ~~~~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (280)
T d1jqea_          37 DTKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRML  116 (280)
T ss_dssp             TTCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHT
T ss_pred             cCCCCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhc
Confidence            445666899999999999998876531     23578999999999999999987643 355544  3444333221111


Q ss_pred             CCCCCccccCCCCCCCCCceee
Q 014571          330 ESNDEPNMCNSKDNNYITSQTS  351 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLv  351 (422)
                      .         ....+.||.|++
T Consensus       117 ~---------~~~~~~fD~I~~  129 (280)
T d1jqea_         117 E---------KKELQKWDFIHM  129 (280)
T ss_dssp             T---------SSSCCCEEEEEE
T ss_pred             c---------cCCCCceeEEEE
Confidence            0         012467898876

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.17  E-value=0.00042  Score=64.96  Aligned_cols=71  Identities=15%  Similarity=0.153  Sum_probs=61.3

Q ss_pred             HHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC-cceEEEecchhhhh
Q 014571          252 VTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL-KCITTYKLDALKAV  325 (422)
Q Consensus       252 lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~-~nv~~~~~Da~~~~  325 (422)
                      -++..+++.+++.||++++|+|.-|..|++.   ..+|+|+|+++..++.++++...... .+++++.+|+.+..
T Consensus        12 kIv~~~~~~~~d~VlEIGPG~G~LT~~Ll~~---~~~v~aiE~D~~l~~~L~~~~~~~~~~~~~~~i~~D~l~~~   83 (278)
T d1zq9a1          12 SIIDKAALRPTDVVLEVGPGTGNMTVKLLEK---AKKVVACELDPRLVAELHKRVQGTPVASKLQVLVGDVLKTD   83 (278)
T ss_dssp             HHHHHTCCCTTCEEEEECCTTSTTHHHHHHH---SSEEEEEESCHHHHHHHHHHHTTSTTGGGEEEEESCTTTSC
T ss_pred             HHHHHhCCCCCCEEEEECCCchHHHHHHHhc---CCcEEEEEEccchhHHHHHHHhhhccccchhhhHHHHhhhh
Confidence            3566778999999999999999999999987   35899999999999999998876543 68999999998753

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=97.17  E-value=0.00056  Score=69.30  Aligned_cols=106  Identities=10%  Similarity=0.023  Sum_probs=72.1

Q ss_pred             ceEEEeChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCC-----------------cEEEEEcCChHHHHHHH
Q 014571          241 GEIFLQNLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDE-----------------GEVVAVDRSHNKVMDIQ  303 (422)
Q Consensus       241 G~~~~Qd~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~-----------------g~V~A~D~s~~rl~~l~  303 (422)
                      |.||--..-+.+.+.+++|++|++|+|-|||+||..+.+.+.+...                 ..+++.|+++.....++
T Consensus       144 GqfyTP~~Iv~~mv~ll~~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~  223 (524)
T d2ar0a1         144 GQYFTPRPLIKTIIHLLKPQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL  223 (524)
T ss_dssp             -CCCCCHHHHHHHHHHHCCCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred             chhccccchhHhhhhcccCccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence            5554444445677789999999999999999999998887765321                 25899999999999998


Q ss_pred             HHHHHhCCcc-e----EEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCccccCc
Q 014571          304 KLAAEMGLKC-I----TTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       304 ~~l~r~g~~n-v----~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPCSg~G~  360 (422)
                      -|+--.|... +    .....|.....              .....+||.|+..||=+....
T Consensus       224 ~nl~l~~~~~~i~~~~~~~~~~~l~~d--------------~~~~~kfD~Ii~NPPfg~~~~  271 (524)
T d2ar0a1         224 MNCLLHDIEGNLDHGGAIRLGNTLGSD--------------GENLPKAHIVATNPPFGSAAG  271 (524)
T ss_dssp             HHHHTTTCCCBGGGTBSEEESCTTSHH--------------HHTSCCEEEEEECCCCTTCSS
T ss_pred             HHHHhhcccccccccchhhhhhhhhhc--------------ccccccceeEEecCCcccccc
Confidence            8887666431 0    11111111100              011357999999999976544

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00069  Score=60.76  Aligned_cols=80  Identities=16%  Similarity=0.207  Sum_probs=64.8

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      ++.+|+|+++|.|==...+|-.. +..+++.+|.+.+|+..+++-.+++|++|+++++.++.....              
T Consensus        65 ~~~~ilDiGsGaG~PGi~laI~~-p~~~~~Lves~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~--------------  129 (207)
T d1jsxa_          65 QGERFIDVGTGPGLPGIPLSIVR-PEAHFTLLDSLGKRVRFLRQVQHELKLENIEPVQSRVEEFPS--------------  129 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHC-TTSEEEEEESCHHHHHHHHHHHHHTTCSSEEEEECCTTTSCC--------------
T ss_pred             cCCceeeeeccCCceeeehhhhc-ccceEEEEecchHHHHHHHHHHHHcCCcceeeeccchhhhcc--------------
Confidence            46799999999998888888764 568999999999999999999999999999999887765321              


Q ss_pred             CCCCCCCceeecCCccc
Q 014571          341 KDNNYITSQTSDSMKLH  357 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCSg  357 (422)
                        ...||.|.+=|=++-
T Consensus       130 --~~~fD~V~sRA~~~~  144 (207)
T d1jsxa_         130 --EPPFDGVISRAFASL  144 (207)
T ss_dssp             --CSCEEEEECSCSSSH
T ss_pred             --ccccceehhhhhcCH
Confidence              235788776554443

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00016  Score=65.30  Aligned_cols=51  Identities=12%  Similarity=0.098  Sum_probs=42.5

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGL  311 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~  311 (422)
                      ..+|.+|||++||+|..+..++...  ...|+|+|+|+.+++.++++++..+.
T Consensus        49 ~~~g~~vLDlGcG~G~~~~~~~~~~--~~~v~giD~S~~~i~~a~~~~~~~~~   99 (257)
T d2a14a1          49 GLQGDTLIDIGSGPTIYQVLAACDS--FQDITLSDFTDRNREELEKWLKKEPG   99 (257)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGT--EEEEEEEESCHHHHHHHHHHHHTCTT
T ss_pred             CCCCCEEEEECCCCCHhHHHHhccc--cCcEEEecCCHHHHHHHHHHHhhccc
Confidence            4678999999999999887776542  23799999999999999999887553

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=96.95  E-value=0.00098  Score=61.04  Aligned_cols=90  Identities=19%  Similarity=0.120  Sum_probs=70.2

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCC
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDE  334 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~  334 (422)
                      ..++...+.+|+|+++|.|-=...+|-++ +..+|+-+|.+.+|+..+++-.+++|++|+.++...+.......      
T Consensus        64 ~~~~~~~~~~ilDiGSGaGfPGi~laI~~-p~~~v~Lves~~KK~~FL~~v~~~L~L~n~~i~~~R~E~~~~~~------  136 (239)
T d1xdza_          64 FYVDFNQVNTICDVGAGAGFPSLPIKICF-PHLHVTIVDSLNKRITFLEKLSEALQLENTTFCHDRAETFGQRK------  136 (239)
T ss_dssp             GTSCGGGCCEEEEECSSSCTTHHHHHHHC-TTCEEEEEESCHHHHHHHHHHHHHHTCSSEEEEESCHHHHTTCT------
T ss_pred             hhhcccCCCeEEeecCCCchHHHHHHHhC-CCccceeecchHHHHHHHHHHHHHhCCCCcEEEeehhhhccccc------
Confidence            33333467799999999999888888775 46799999999999999999999999999999998877653211      


Q ss_pred             ccccCCCCCCCCCceeecCCccc
Q 014571          335 PNMCNSKDNNYITSQTSDSMKLH  357 (422)
Q Consensus       335 ~~~~~~~~~~~FD~VLvDaPCSg  357 (422)
                            .....||.|..=|=.+-
T Consensus       137 ------~~~~~~D~v~sRAva~l  153 (239)
T d1xdza_         137 ------DVRESYDIVTARAVARL  153 (239)
T ss_dssp             ------TTTTCEEEEEEECCSCH
T ss_pred             ------cccccceEEEEhhhhCH
Confidence                  12456898887554433

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=96.90  E-value=0.00053  Score=63.28  Aligned_cols=69  Identities=16%  Similarity=0.225  Sum_probs=57.8

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhh
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVR  326 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~  326 (422)
                      .+..+++.+|+.||++++|+|.-|..|++.   ..+|+|+|+++..++.++++..  ..+|++++.+|+.++..
T Consensus        13 Iv~~~~~~~~d~vlEIGpG~G~LT~~Ll~~---~~~v~aiEiD~~l~~~L~~~~~--~~~~~~ii~~D~l~~~~   81 (252)
T d1qyra_          13 IVSAINPQKGQAMVEIGPGLAALTEPVGER---LDQLTVIELDRDLAARLQTHPF--LGPKLTIYQQDAMTFNF   81 (252)
T ss_dssp             HHHHHCCCTTCCEEEECCTTTTTHHHHHTT---CSCEEEECCCHHHHHHHHTCTT--TGGGEEEECSCGGGCCH
T ss_pred             HHHhcCCCCCCEEEEECCCchHHHHHHHcc---CCceEEEEeccchhHHHHHHhh--hccchhHHhhhhhhhcc
Confidence            466778999999999999999999999987   3589999999999999887432  23689999999987643

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=96.87  E-value=5.6e-05  Score=69.83  Aligned_cols=80  Identities=14%  Similarity=0.118  Sum_probs=63.7

Q ss_pred             ceEEEeChh-HHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEec
Q 014571          241 GEIFLQNLP-SIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKL  319 (422)
Q Consensus       241 G~~~~Qd~~-S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~  319 (422)
                      |.=++.|.. ..-.+..++++++++||++++|+|.-|..|++.   ..+|+|+|+++..++.++++..  +..|++++++
T Consensus         8 GQnFL~d~~ii~kIv~~~~~~~~d~VLEIGpG~G~LT~~L~~~---~~~v~aIE~D~~l~~~l~~~~~--~~~n~~ii~~   82 (245)
T d1yuba_           8 SQNFLTSEKVLNQIIKQLNLKETDTVYEIGTGKGHLTTKLAKI---SKQVTSIELDSHLFNLSSEKLK--LNTRVTLIHQ   82 (245)
T ss_dssp             CCCBCCCTTTHHHHHHHCCCCSSEEEEECSCCCSSCSHHHHHH---SSEEEESSSSCSSSSSSSCTTT--TCSEEEECCS
T ss_pred             CCcccCCHHHHHHHHHhcCCCCCCeEEEECCCccHHHHHHHhh---cCceeEeeecccchhhhhhhhh--hccchhhhhh
Confidence            444445543 245677889999999999999999999999987   3589999999999888876543  3468999999


Q ss_pred             chhhhh
Q 014571          320 DALKAV  325 (422)
Q Consensus       320 Da~~~~  325 (422)
                      |+.++.
T Consensus        83 D~l~~~   88 (245)
T d1yuba_          83 DILQFQ   88 (245)
T ss_dssp             CCTTTT
T ss_pred             hhhccc
Confidence            998764

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.79  E-value=0.00054  Score=62.97  Aligned_cols=50  Identities=12%  Similarity=0.104  Sum_probs=40.0

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM  309 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~  309 (422)
                      +...|.+|||++||||..+...+..-  -.+|+|+|.|+.+++.+++++++.
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~~~~--~~~v~~~D~S~~~i~~~~~~~~~~  100 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSACSH--FEDITMTDFLEVNRQELGRWLQEE  100 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTGGGG--CSEEEEECSCHHHHHHHHHHHTTC
T ss_pred             CCCCCcEEEEeccCCCHHHHHHhccc--CCeEEEEeCCHHHHHHHHHHHhcC
Confidence            45579999999999998776555432  248999999999999999887653

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=96.46  E-value=0.0027  Score=60.09  Aligned_cols=83  Identities=17%  Similarity=0.093  Sum_probs=65.1

Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh--C---CcceEEEecchhhhhhccCC
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM--G---LKCITTYKLDALKAVRRKNE  330 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~--g---~~nv~~~~~Da~~~~~~~~~  330 (422)
                      .+.+ ...+||.++.|.|+-+..+++. .+..+|+++|+++.-++.+++.+...  +   -++++++.+|++.+....  
T Consensus        73 ~~~~-~pk~VLiiG~G~G~~~~~ll~~-~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~--  148 (312)
T d1uira_          73 LTHP-EPKRVLIVGGGEGATLREVLKH-PTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT--  148 (312)
T ss_dssp             HHSS-CCCEEEEEECTTSHHHHHHTTS-TTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC--
T ss_pred             hhCC-CcceEEEeCCCchHHHHHHHhc-CCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhc--
Confidence            3344 4569999999999988877765 34579999999999999999987653  2   246999999999986531  


Q ss_pred             CCCCccccCCCCCCCCCceeecCC
Q 014571          331 SNDEPNMCNSKDNNYITSQTSDSM  354 (422)
Q Consensus       331 ~~~~~~~~~~~~~~~FD~VLvDaP  354 (422)
                                  ..+||.|++|.+
T Consensus       149 ------------~~~yDvIi~D~~  160 (312)
T d1uira_         149 ------------EERYDVVIIDLT  160 (312)
T ss_dssp             ------------CCCEEEEEEECC
T ss_pred             ------------CCcccEEEEeCC
Confidence                        356999999984

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=96.17  E-value=0.007  Score=56.12  Aligned_cols=82  Identities=16%  Similarity=0.138  Sum_probs=65.0

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh-C---CcceEEEecchhhhhhccCCCCCCc
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM-G---LKCITTYKLDALKAVRRKNESNDEP  335 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~-g---~~nv~~~~~Da~~~~~~~~~~~~~~  335 (422)
                      ....+||-+|.|.|+-+..+... .+..+|+.+|+++.-++.+++..... +   -++++++..|++.+....       
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~-~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~-------  145 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKH-PSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKS-------  145 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTC-TTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTC-------
T ss_pred             CCcceEEecCCCCcHHHHHHHhc-CCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhc-------
Confidence            34579999999999988888765 33569999999999999998876432 2   256999999999987431       


Q ss_pred             cccCCCCCCCCCceeecCCcc
Q 014571          336 NMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       336 ~~~~~~~~~~FD~VLvDaPCS  356 (422)
                             ..+||.|++|++..
T Consensus       146 -------~~~yDvIi~D~~~p  159 (274)
T d1iy9a_         146 -------ENQYDVIMVDSTEP  159 (274)
T ss_dssp             -------CSCEEEEEESCSSC
T ss_pred             -------CCCCCEEEEcCCCC
Confidence                   35699999999764

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.15  E-value=0.0072  Score=56.02  Aligned_cols=80  Identities=19%  Similarity=0.188  Sum_probs=61.7

Q ss_pred             CCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHH----------hCCcceEEEecchhhhhhccC
Q 014571          260 QKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAE----------MGLKCITTYKLDALKAVRRKN  329 (422)
Q Consensus       260 ~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r----------~g~~nv~~~~~Da~~~~~~~~  329 (422)
                      ....+||-++.|.|+-+.+++..  +..+|+++|+++..++.+++-...          ..-++++++..|++.+...  
T Consensus        71 ~~p~~vLiiG~G~G~~~~~~l~~--~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~--  146 (276)
T d1mjfa_          71 PKPKRVLVIGGGDGGTVREVLQH--DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN--  146 (276)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTS--CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHH--
T ss_pred             CCCceEEEecCCchHHHHHHHHh--CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhc--
Confidence            44579999999999988877764  346899999999999998865421          1235699999999987642  


Q ss_pred             CCCCCccccCCCCCCCCCceeecCCcc
Q 014571          330 ESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                                   .++||.|++|++..
T Consensus       147 -------------~~~yDvIi~D~~~~  160 (276)
T d1mjfa_         147 -------------NRGFDVIIADSTDP  160 (276)
T ss_dssp             -------------CCCEEEEEEECCCC
T ss_pred             -------------cCCCCEEEEeCCCC
Confidence                         24599999999863

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.10  E-value=0.0072  Score=56.72  Aligned_cols=87  Identities=13%  Similarity=0.084  Sum_probs=65.2

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh----CCcceEEEecchhhhhhccC
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM----GLKCITTYKLDALKAVRRKN  329 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~----g~~nv~~~~~Da~~~~~~~~  329 (422)
                      +..+.+.| .+||=++.|.|+-+..++..- +..+|+++|+++..++.+++.+...    .-++++++..|++++...  
T Consensus        83 pl~~~~~p-k~VLiiGgG~G~~~r~~l~~~-~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~--  158 (295)
T d1inla_          83 PMFLHPNP-KKVLIIGGGDGGTLREVLKHD-SVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK--  158 (295)
T ss_dssp             HHHHSSSC-CEEEEEECTTCHHHHHHTTST-TCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG--
T ss_pred             hHhhCCCC-ceEEEecCCchHHHHHHHhcC-CCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhc--
Confidence            33445554 699999999999888887753 3468999999999999998876542    125699999999998642  


Q ss_pred             CCCCCccccCCCCCCCCCceeecCCcc
Q 014571          330 ESNDEPNMCNSKDNNYITSQTSDSMKL  356 (422)
Q Consensus       330 ~~~~~~~~~~~~~~~~FD~VLvDaPCS  356 (422)
                                  ..++||.|++|.+..
T Consensus       159 ------------~~~~yDvIi~D~~dp  173 (295)
T d1inla_         159 ------------FKNEFDVIIIDSTDP  173 (295)
T ss_dssp             ------------CSSCEEEEEEEC---
T ss_pred             ------------CCCCCCEEEEcCCCC
Confidence                        145799999998764

>d2as0a1 b.122.1.9 (A:1-72) Hypothetical protein PH1915, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: PUA domain-like
superfamily: PUA domain-like
family: Hypothetical RNA methyltransferase domain (HRMD)
domain: Hypothetical protein PH1915, N-terminal domain
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.63  E-value=0.007  Score=44.71  Aligned_cols=40  Identities=33%  Similarity=0.564  Sum_probs=37.3

Q ss_pred             CEEEEccccHHHHHcCCc-cccCceeeccCCccCCCEEEEe
Q 014571          124 KEVIVSRKCAEAVLRGAQ-VYVPGVMACSSHVEKGDVVAVS  163 (422)
Q Consensus       124 k~ViVd~~~~eaVlrGA~-v~~PGil~~~~~~~~gd~V~v~  163 (422)
                      .+|+|+.+++.++.+|.- +|..||......++.||.|.|+
T Consensus         2 ~~v~l~~~a~~~l~~g~pwi~~~~i~~~~g~~~~Gd~V~v~   42 (72)
T d2as0a1           2 ARVVVDAQAARAIGKGAMIVFKKGVVRVEGDIKPGDIVEVY   42 (72)
T ss_dssp             CEEEECHHHHHHHHTTCCEEEGGGEEEEESCCCTTCEEEEE
T ss_pred             CEEEECHhHHHHHHcCCCeECHhhcccccCCcCCCcEEEEE
Confidence            479999999999999855 8999999999999999999999

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.56  E-value=0.011  Score=55.87  Aligned_cols=84  Identities=14%  Similarity=0.167  Sum_probs=64.8

Q ss_pred             hcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh----CCcceEEEecchhhhhhccCCC
Q 014571          256 ALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM----GLKCITTYKLDALKAVRRKNES  331 (422)
Q Consensus       256 ~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~----g~~nv~~~~~Da~~~~~~~~~~  331 (422)
                      .+.+. ..+||-++.|.|+-+..++.. .+..+|+.+|+++.-++.+++-+...    .-++++++..|++++....   
T Consensus       102 ~~~~~-pk~VLIiGgG~G~~~rellk~-~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~---  176 (312)
T d2b2ca1         102 FAHPD-PKRVLIIGGGDGGILREVLKH-ESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNH---  176 (312)
T ss_dssp             HHSSS-CCEEEEESCTTSHHHHHHTTC-TTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHC---
T ss_pred             hcCCC-CCeEEEeCCCchHHHHHHHHc-CCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhC---
Confidence            33444 469999999999988888765 33469999999999999999876432    2256999999999987431   


Q ss_pred             CCCccccCCCCCCCCCceeecCCc
Q 014571          332 NDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       332 ~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                                 ..+||.|++|++-
T Consensus       177 -----------~~~yDvII~D~~d  189 (312)
T d2b2ca1         177 -----------KNEFDVIITDSSD  189 (312)
T ss_dssp             -----------TTCEEEEEECCC-
T ss_pred             -----------CCCCCEEEEcCCC
Confidence                       3569999999874

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.55  E-value=0.022  Score=52.93  Aligned_cols=80  Identities=14%  Similarity=0.167  Sum_probs=63.2

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh----CCcceEEEecchhhhhhccCCCCCCcc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM----GLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~----g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      ...+||=++.|.|+-+..+.+. .+..+|+.+|+++.-++.+++-+...    .-++++++..|++.+....        
T Consensus        78 ~pk~vLiiGgG~G~~~~~~l~~-~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~--------  148 (285)
T d2o07a1          78 NPRKVLIIGGGDGGVLREVVKH-PSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQN--------  148 (285)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTC--------
T ss_pred             CcCeEEEeCCCchHHHHHHHHc-CCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcC--------
Confidence            3469999999999988888765 34569999999999999999876532    2256999999999987531        


Q ss_pred             ccCCCCCCCCCceeecCCc
Q 014571          337 MCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPC  355 (422)
                            ..+||.|++|++-
T Consensus       149 ------~~~yDvIi~D~~~  161 (285)
T d2o07a1         149 ------QDAFDVIITDSSD  161 (285)
T ss_dssp             ------SSCEEEEEEECC-
T ss_pred             ------CCCCCEEEEcCCC
Confidence                  3569999999753

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=95.29  E-value=0.028  Score=51.29  Aligned_cols=108  Identities=7%  Similarity=-0.081  Sum_probs=70.2

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCCC
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSKD  342 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~~  342 (422)
                      .+|+|++||.||.+.-+-+. + --.+.|+|+++...+..+.|.     + -.++..|.+++....              
T Consensus         1 mk~~~lF~G~Gg~~~gl~~a-G-~~~~~a~e~d~~a~~~~~~N~-----~-~~~~~~Di~~~~~~~--------------   58 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKA-G-FRIICANEYDKSIWKTYESNH-----S-AKLIKGDISKISSDE--------------   58 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHH-T-CEEEEEEECCHHHHHHHHHHC-----C-SEEEESCTTTSCGGG--------------
T ss_pred             CeEEEeCcCcCHHHHHHHHC-C-CEEEEEEeCCHHHHHHHHHHC-----C-CCCccCChhhCCHhH--------------
Confidence            37999999999998877654 2 235679999999998888772     2 245677877653211              


Q ss_pred             CCCCCceeecCCccccCchhhhhhCCCCCccccccCcccchhHHHHHHHHHHhccceeccEEEe
Q 014571          343 NNYITSQTSDSMKLHKEVPSIAAEGLNGDKSCKEKGRTCGECGMAQEEINALVVGLRIQKVLVL  406 (422)
Q Consensus       343 ~~~FD~VLvDaPCSg~G~l~~lrr~p~~~~~w~~~~~~~~~l~~~Q~~IL~~a~~lr~~~~~~~  406 (422)
                      -..+|.+..-+||.+--.   ..+....        .  .+-..+-.++++-+..+|+ +++++
T Consensus        59 ~~~~dll~~g~PCq~fS~---ag~~~g~--------~--d~r~~l~~~~~~~i~~~~P-k~~~l  108 (324)
T d1dcta_          59 FPKCDGIIGGPPCQSWSE---GGSLRGI--------D--DPRGKLFYEYIRILKQKKP-IFFLA  108 (324)
T ss_dssp             SCCCSEEEECCCCTTTSS---SSCCCCS--------S--SHHHHHHHHHHHHHHHHCC-SEEEE
T ss_pred             cccccEEeeccccccccc---ccccccc--------c--ccccchHHHHHHHHHhhCC-ceeec
Confidence            134799999999998765   2222111        1  1223344555555555666 66666

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.24  E-value=0.0083  Score=55.60  Aligned_cols=80  Identities=11%  Similarity=-0.068  Sum_probs=51.5

Q ss_pred             CeEEEecCCCChhHHHHHhccCCCc-EEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCCC
Q 014571          263 ERILDMCAAPGGKTTAIASLLRDEG-EVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNSK  341 (422)
Q Consensus       263 ~~VLD~CAgpGgKT~~la~l~~~~g-~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~~  341 (422)
                      .+|+|+|||.||.+..+-.. +=.. .|.|+|+++..++..+.|.     ++..++..|.........            
T Consensus         3 ~kv~~lF~G~Gg~~~gl~~a-G~~~~~~~a~E~~~~a~~~~~~n~-----~~~~~~~~di~~~~~~~~------------   64 (343)
T d1g55a_           3 LRVLELYSGVGGMHHALRES-CIPAQVVAAIDVNTVANEVYKYNF-----PHTQLLAKTIEGITLEEF------------   64 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHH-TCSEEEEEEECCCHHHHHHHHHHC-----TTSCEECSCGGGCCHHHH------------
T ss_pred             CEEEEcCcCccHHHHHHHHc-CCCCeEEEEEECCHHHHHHHHHHC-----CCCCcccCchhhCCHhHc------------
Confidence            48999999999988776554 2122 3789999999999888762     345566677665432210            


Q ss_pred             CCCCCCceeecCCccccCc
Q 014571          342 DNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       342 ~~~~FD~VLvDaPCSg~G~  360 (422)
                      ....+|.+..-+||.+--.
T Consensus        65 ~~~~~Dll~ggpPCq~fS~   83 (343)
T d1g55a_          65 DRLSFDMILMSPPCQPFTR   83 (343)
T ss_dssp             HHHCCSEEEECCC------
T ss_pred             CCCCccEEEeecccccccc
Confidence            0124799999999999755

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=95.03  E-value=0.016  Score=50.50  Aligned_cols=55  Identities=22%  Similarity=0.253  Sum_probs=43.3

Q ss_pred             HHHhcCCCCCCeEEEecCCCCh-hHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571          253 TAHALDPQKGERILDMCAAPGG-KTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK  312 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGg-KT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~  312 (422)
                      ++...++++|++||-++|||.| -+..+|..++ ..+|+++|.++.|++.++    ++|..
T Consensus        17 a~~~a~v~~G~tVlV~GaG~vGl~a~~~ak~~g-a~~Vi~~d~~~~rl~~a~----~~Ga~   72 (195)
T d1kola2          17 GAVTAGVGPGSTVYVAGAGPVGLAAAASARLLG-AAVVIVGDLNPARLAHAK----AQGFE   72 (195)
T ss_dssp             HHHHTTCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEEESCHHHHHHHH----HTTCE
T ss_pred             HHHHhCCCCCCEEEEECcCHHHHHHHHHHHhhc-ccceeeecccchhhHhhh----hcccc
Confidence            4566789999999999999955 5566666654 569999999999997665    56764

>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HhaI
species: Haemophilus haemolyticus [TaxId: 726]

Probab=94.96  E-value=0.027  Score=51.99  Aligned_cols=77  Identities=14%  Similarity=0.000  Sum_probs=56.9

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhhhccCCCCCCccccCC
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAVRRKNESNDEPNMCNS  340 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~~~~~~~~~~~~~~~~  340 (422)
                      .+.+|||+|||.||-+..+-+. + --.|.|+|+++..++..+.|.   +  +  ...+|.+++....            
T Consensus        10 ~~lrv~~lFsG~Gg~~~gl~~a-G-~~~v~a~e~d~~a~~~~~~N~---~--~--~~~~Di~~~~~~~------------   68 (327)
T d2c7pa1          10 TGLRFIDLFAGLGGFRLALESC-G-AECVYSNEWDKYAQEVYEMNF---G--E--KPEGDITQVNEKT------------   68 (327)
T ss_dssp             TTCEEEEETCTTTHHHHHHHHT-T-CEEEEEECCCHHHHHHHHHHH---S--C--CCBSCGGGSCGGG------------
T ss_pred             CCCeEEEECccccHHHHHHHHC-C-CeEEEEEeCCHHHHHHHHHHC---C--C--CCcCchhcCchhh------------
Confidence            5789999999999999887654 2 236788999999999998874   2  1  1246766643221            


Q ss_pred             CCCCCCCceeecCCccccCc
Q 014571          341 KDNNYITSQTSDSMKLHKEV  360 (422)
Q Consensus       341 ~~~~~FD~VLvDaPCSg~G~  360 (422)
                        ...+|.+..-+||.+--.
T Consensus        69 --~~~~Dll~ggpPCq~fS~   86 (327)
T d2c7pa1          69 --IPDHDILCAGFPCQAFSI   86 (327)
T ss_dssp             --SCCCSEEEEECCCTTTCT
T ss_pred             --cceeeeeecccccchhhh
Confidence              124799999999998655

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=94.66  E-value=0.053  Score=50.34  Aligned_cols=81  Identities=10%  Similarity=0.076  Sum_probs=63.1

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh----CCcceEEEecchhhhhhccCCCCCCcc
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM----GLKCITTYKLDALKAVRRKNESNDEPN  336 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~----g~~nv~~~~~Da~~~~~~~~~~~~~~~  336 (422)
                      ...+||=++.|.|+-...+... .+..+|+++|+++.-++.+++-....    .-++++++..|++++....        
T Consensus        80 ~pk~VLiiGgG~G~~~r~~l~~-~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~--------  150 (290)
T d1xj5a_          80 NPKKVLVIGGGDGGVLREVARH-ASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA--------  150 (290)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTC-TTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS--------
T ss_pred             CCcceEEecCCchHHHHHHHhc-ccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhc--------
Confidence            3469999999999988877765 33468999999999999998866432    2356999999999887431        


Q ss_pred             ccCCCCCCCCCceeecCCc
Q 014571          337 MCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       337 ~~~~~~~~~FD~VLvDaPC  355 (422)
                           ..++||.|++|++-
T Consensus       151 -----~~~~yDvIi~D~~d  164 (290)
T d1xj5a_         151 -----AEGSYDAVIVDSSD  164 (290)
T ss_dssp             -----CTTCEEEEEECCCC
T ss_pred             -----cccCccEEEEcCCC
Confidence                 13579999999875

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=94.51  E-value=0.022  Score=50.39  Aligned_cols=46  Identities=17%  Similarity=0.223  Sum_probs=37.6

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHH
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAA  307 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~  307 (422)
                      -.+|+.|||.+||.|. |...|..++  -+-+++|+++.-++.++++++
T Consensus       210 s~~gd~VlDpF~GSGT-T~~aa~~~~--R~~ig~El~~~y~~~a~~Rl~  255 (256)
T d1g60a_         210 SNPNDLVLDCFMGSGT-TAIVAKKLG--RNFIGCDMNAEYVNQANFVLN  255 (256)
T ss_dssp             CCTTCEEEESSCTTCH-HHHHHHHTT--CEEEEEESCHHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCchH-HHHHHHHcC--CeEEEEeCCHHHHHHHHHHHc
Confidence            3789999999999996 444444543  478999999999999999876

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=94.34  E-value=0.0084  Score=54.93  Aligned_cols=98  Identities=13%  Similarity=0.049  Sum_probs=65.0

Q ss_pred             hhHHHHHHhcCC---CCCCeEEEecCCCChhHHHHHhccCC---------------------------------------
Q 014571          248 LPSIVTAHALDP---QKGERILDMCAAPGGKTTAIASLLRD---------------------------------------  285 (422)
Q Consensus       248 ~~S~lv~~~L~p---~pg~~VLD~CAgpGgKT~~la~l~~~---------------------------------------  285 (422)
                      +++-+...++.+   +.+..++|-|||.|...+..|....+                                       
T Consensus        34 Laa~il~~al~l~~w~~~~~LlDPmCGSGTilIEAAlia~niaPGl~R~f~fe~w~~~~~~~w~~l~~~a~~~~~~~~~~  113 (249)
T d1o9ga_          34 LATEIFQRALARLPGDGPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARELERRE  113 (249)
T ss_dssp             HHHHHHHHHHHTSSCCSCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcCCCCCceeccccCccHHHHHHHHHHhCcCcCcccchhhhcccccCHHHHHHHHHHHHHHHhccccc
Confidence            444444444333   34567999999999887776654211                                       


Q ss_pred             CcEEEEEcCChHHHHHH---HHHHHHhCCcc-eEEEecchhhhhhccCCCCCCccccCCCCCCCCCceeecCCc
Q 014571          286 EGEVVAVDRSHNKVMDI---QKLAAEMGLKC-ITTYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDSMK  355 (422)
Q Consensus       286 ~g~V~A~D~s~~rl~~l---~~~l~r~g~~n-v~~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDaPC  355 (422)
                      ...+++.|++++.++.+   ++|+++.|+.. |.+.+.|.++.......          ......+.|+++||-
T Consensus       114 ~~~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~----------~~~~~~GlIVtNPPY  177 (249)
T d1o9ga_         114 QSERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAV----------LAGSAPDVVLTDLPY  177 (249)
T ss_dssp             HHHHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHH----------HTTCCCSEEEEECCG
T ss_pred             cCCccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhc----------cCCCCCCEEEeCCCc
Confidence            13578899999888877   57999999854 88888888654321100          012235789999996

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=94.29  E-value=0.025  Score=50.60  Aligned_cols=49  Identities=20%  Similarity=0.159  Sum_probs=39.4

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG  310 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g  310 (422)
                      -.+|+.|||.+||.|. |.+.|..++  -+-+++|+++.-++.++++++...
T Consensus       205 s~~gdiVLDpF~GSGT-T~~Aa~~lg--R~~ig~El~~~y~~~a~~Ri~~~~  253 (279)
T d1eg2a_         205 SHPGSTVLDFFAGSGV-TARVAIQEG--RNSICTDAAPVFKEYYQKQLTFLQ  253 (279)
T ss_dssp             SCTTCEEEETTCTTCH-HHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC-
T ss_pred             cCCCCEEEecCCCCcH-HHHHHHHhC--CeEEEEeCCHHHHHHHHHHHHHhh
Confidence            3689999999999996 444444443  489999999999999999998753

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.13  E-value=0.021  Score=53.03  Aligned_cols=57  Identities=19%  Similarity=0.106  Sum_probs=37.0

Q ss_pred             EEEeecCCCCHHHHHHHHHHHHHhcCCCCcccccccc-----cccCCCccccccCCCCCcEEEEeCCCCcc
Q 014571           47 CIRVNTLKTTTDDVIQKLLAIIQNSGSSEADVASSVK-----GRLQNGTISESQIPGLEYVVFVKGSGPHT  112 (422)
Q Consensus        47 ~~Rvnt~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~l~~~~~gp~~  112 (422)
                      |+||||+|+|++++++.|+++         |...+..     ............+|..++++.++..++..
T Consensus         5 ~~RVNtlk~~~ee~~~~L~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~l~~~~~~~l~   66 (293)
T d2b9ea1           5 FVRVNTLKTCSDDVVDYFKRQ---------GFSYQGRASSLDDLRALKGKHFLLDPLMPELLVFPAQTDLH   66 (293)
T ss_dssp             EEEECTTTCCHHHHHHHHHHT---------TCEEEEECSSHHHHHTCCTTEEEECSSSTTEEEECTTCCCT
T ss_pred             EEEECCCcCCHHHHHHHHHHc---------CCccccccccchhhhhcccccccccCCCCCeEEeCCCCCcc
Confidence            699999999999999998865         2101000     00011123345688899999998776643

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.79  E-value=0.063  Score=50.38  Aligned_cols=61  Identities=8%  Similarity=0.028  Sum_probs=50.1

Q ss_pred             CCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEEEecchhhhh
Q 014571          261 KGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITTYKLDALKAV  325 (422)
Q Consensus       261 pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~~~~Da~~~~  325 (422)
                      .++.|||++.|+|.-|.+|.+..+ ..+|+|+|.++.-++.+++...   -.+++++.+|+..+.
T Consensus        43 ~~~~VlEIGPG~G~LT~~Ll~~~~-~~~v~~iE~D~~~~~~L~~~~~---~~~~~ii~~D~l~~~  103 (322)
T d1i4wa_          43 EELKVLDLYPGVGIQSAIFYNKYC-PRQYSLLEKRSSLYKFLNAKFE---GSPLQILKRDPYDWS  103 (322)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHHHC-CSEEEEECCCHHHHHHHHHHTT---TSSCEEECSCTTCHH
T ss_pred             CCCeEEEECCCCCHHHHHHHhcCC-CCEEEEEECCHHHHHHHHHhcc---CCCcEEEeCchhhcc
Confidence            467899999999999999988642 2489999999999999887543   367899999987653

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=93.05  E-value=0.04  Score=50.02  Aligned_cols=58  Identities=10%  Similarity=0.101  Sum_probs=42.2

Q ss_pred             ChhHHHHHHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHh
Q 014571          247 NLPSIVTAHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEM  309 (422)
Q Consensus       247 d~~S~lv~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~  309 (422)
                      ++...++-..  -.+|+.|||.+||.|. |.+.|..++  -+-+++|+++.-++.+++++...
T Consensus       238 ~L~~rlI~~~--s~~gdiVlDpF~GSGT-T~~AA~~lg--R~~Ig~El~~~y~~~a~~Rl~~~  295 (320)
T d1booa_         238 KLPEFFIRML--TEPDDLVVDIFGGSNT-TGLVAERES--RKWISFEMKPEYVAASAFRFLDN  295 (320)
T ss_dssp             HHHHHHHHHH--CCTTCEEEETTCTTCH-HHHHHHHTT--CEEEEEESCHHHHHHHHGGGSCS
T ss_pred             HHHHHhhhhc--ccCCCEEEecCCCCcH-HHHHHHHcC--CcEEEEeCCHHHHHHHHHHHHhc
Confidence            4444444333  3589999999999996 444455553  48899999999999998876554

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.79  E-value=0.069  Score=45.21  Aligned_cols=54  Identities=22%  Similarity=0.255  Sum_probs=41.0

Q ss_pred             HhcCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          255 HALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      +..++++|++||-++||| |--+.++|..++ ..+|+++|.++.|++.++    ++|.+.
T Consensus        22 ~~~~~~~G~~VlV~GaG~iG~~~~~~ak~~G-a~~Vi~~~~~~~~~~~a~----~lGa~~   76 (182)
T d1vj0a2          22 EYPESFAGKTVVIQGAGPLGLFGVVIARSLG-AENVIVIAGSPNRLKLAE----EIGADL   76 (182)
T ss_dssp             TCSSCCBTCEEEEECCSHHHHHHHHHHHHTT-BSEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             HHhCCCCCCEEEEECCCccchhheecccccc-cccccccccccccccccc----cccceE
Confidence            445688999999998775 556777777764 248999999999997665    468653

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=91.79  E-value=0.1  Score=43.60  Aligned_cols=55  Identities=13%  Similarity=0.138  Sum_probs=41.9

Q ss_pred             HhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          255 HALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      ...+++||++|+=.+||++|-...+.........|+++|.+++|++.++    ++|.+.
T Consensus        22 ~~a~~k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~----~~GAd~   76 (175)
T d1cdoa2          22 NTAKVEPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK----VFGATD   76 (175)
T ss_dssp             TTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HTTCCE
T ss_pred             HhhCCCCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHH----HcCCcE
Confidence            4567999999999999996665554444444579999999999987655    588753

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=91.75  E-value=0.043  Score=49.34  Aligned_cols=98  Identities=15%  Similarity=0.109  Sum_probs=62.3

Q ss_pred             cceEEEeChhHHHHHH-hcCCCCCCeEEEecCCCChhHHHHHhcc---CCCcEEEEEcCChHHHHHHHHHHHHhCCcceE
Q 014571          240 EGEIFLQNLPSIVTAH-ALDPQKGERILDMCAAPGGKTTAIASLL---RDEGEVVAVDRSHNKVMDIQKLAAEMGLKCIT  315 (422)
Q Consensus       240 ~G~~~~Qd~~S~lv~~-~L~p~pg~~VLD~CAgpGgKT~~la~l~---~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~  315 (422)
                      .|.-.+|.+-=+++-+ ++.-....+||.++.+.|+-+..+++.+   +..++|+++|++..+.....     .-.++|+
T Consensus        58 ~G~p~~k~p~d~~~~~eli~~~KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-----~~~~~I~  132 (232)
T d2bm8a1          58 RGLRMLKDPDTQAVYHDMLWELRPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-----SDMENIT  132 (232)
T ss_dssp             TTEECCSCHHHHHHHHHHHHHHCCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-----GGCTTEE
T ss_pred             cceecccCHHHHHHHHHHHHHhCCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-----cccccee
Confidence            4655666654333332 2221234599999999999888777654   56799999999876543322     1246799


Q ss_pred             EEecchhhhhhccCCCCCCccccCCCCCCCCCceeecC
Q 014571          316 TYKLDALKAVRRKNESNDEPNMCNSKDNNYITSQTSDS  353 (422)
Q Consensus       316 ~~~~Da~~~~~~~~~~~~~~~~~~~~~~~~FD~VLvDa  353 (422)
                      ++.+|+........           .....||.|++|.
T Consensus       133 ~i~gDs~~~~~~~~-----------l~~~~~dlIfID~  159 (232)
T d2bm8a1         133 LHQGDCSDLTTFEH-----------LREMAHPLIFIDN  159 (232)
T ss_dssp             EEECCSSCSGGGGG-----------GSSSCSSEEEEES
T ss_pred             eeecccccHHHHHH-----------HHhcCCCEEEEcC
Confidence            99999875432110           1133578899986

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=91.37  E-value=0.15  Score=43.13  Aligned_cols=55  Identities=20%  Similarity=0.150  Sum_probs=42.6

Q ss_pred             HHHhcCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571          253 TAHALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK  312 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~  312 (422)
                      +++..+++||++||=++||+ |--+.++|+.++ ..+|+++|.+++|++.++    ++|..
T Consensus        19 a~~~a~~~~g~~VlI~GaG~vGl~~~q~ak~~G-a~~Vi~~d~~~~r~~~a~----~lGa~   74 (174)
T d1jqba2          19 GAELADIEMGSSVVVIGIGAVGLMGIAGAKLRG-AGRIIGVGSRPICVEAAK----FYGAT   74 (174)
T ss_dssp             HHHHTTCCTTCCEEEECCSHHHHHHHHHHHTTT-CSCEEEECCCHHHHHHHH----HHTCS
T ss_pred             HHHHhCCCCCCEEEEEcCCcchhhhhhhhhccc-ccccccccchhhhHHHHH----hhCcc
Confidence            45667899999999888877 556677777653 347999999999988775    57864

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.33  E-value=0.016  Score=54.59  Aligned_cols=58  Identities=5%  Similarity=-0.198  Sum_probs=46.5

Q ss_pred             ccCCCCchhhhhhhcccCC-CCCCCcccCCCceEEEEccCccCHHHHhc--ccCcceeecc
Q 014571          169 PTLDGGWGLGITRGTVLQG-SQTDPYYFERSGLYIGQGTAMMSRAGIFR--ASEGIAVDMH  226 (422)
Q Consensus       169 ~~~~p~W~~~~~r~~~~~~-~~~~~~~~~~~~v~Vrvg~a~msreel~~--~~~GiaV~~~  226 (422)
                      ++++|.|+++.+...+... .++.+++++++++++|+|+.+.+++++.+  ...|+.++..
T Consensus        11 ~~~~p~wl~~~~~~~~Gee~~~l~~a~~~~~p~~iRvN~~k~~~e~~~~~L~~~g~~~~~~   71 (313)
T d1ixka_          11 RLGYSKLFADRYFQLWGERAIRIAEAMEKPLPRCFRVNTLKISVQDLVKRLNKKGFQFKRV   71 (313)
T ss_dssp             HTTCCHHHHHHHHHHHTTHHHHHHHHTTSCCCCEEEECTTTSCHHHHHHHHHHTTCEEEEE
T ss_pred             HcCCCHHHHHHHHHHhhHHHHHHHHHcCCCCCeEEEEcCCcCCHHHHHHHHHhCCCceEEC
Confidence            5799999999888877532 24667888999999999999999999887  4678776643

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=91.16  E-value=0.36  Score=43.15  Aligned_cols=60  Identities=13%  Similarity=0.034  Sum_probs=44.0

Q ss_pred             HHhcC-CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhC-CcceEEEecchh
Q 014571          254 AHALD-PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMG-LKCITTYKLDAL  322 (422)
Q Consensus       254 ~~~L~-p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g-~~nv~~~~~Da~  322 (422)
                      +...+ .....+|||+++|+|..+.++++.. +..+++.+|.- ..       ++..+ ..+|+++.+|..
T Consensus        73 ~~~~~~f~~~~~vlDiGGG~G~~~~~l~~~~-P~l~~~v~Dlp-~v-------i~~~~~~~ri~~~~gd~~  134 (244)
T d1fp1d2          73 LEIYTGFEGISTLVDVGGGSGRNLELIISKY-PLIKGINFDLP-QV-------IENAPPLSGIEHVGGDMF  134 (244)
T ss_dssp             HHHCCTTTTCSEEEEETCTTSHHHHHHHHHC-TTCEEEEEECH-HH-------HTTCCCCTTEEEEECCTT
T ss_pred             HHhcccccCCcEEEEecCCCcHHHHHHHHHC-CCCeEEEecch-hh-------hhccCCCCCeEEecCCcc
Confidence            34444 3456899999999999999999985 56899999974 22       22332 367899888864

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=90.66  E-value=0.16  Score=42.95  Aligned_cols=56  Identities=9%  Similarity=0.118  Sum_probs=41.2

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      ....++++|++|+=++||+.|-.........+..+|+++|.+++|++.++    ++|.+.
T Consensus        22 ~~~~~~~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak----~~GA~~   77 (176)
T d1d1ta2          22 VKTGKVKPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAM----AVGATE   77 (176)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH----HHTCSE
T ss_pred             HHhhCCCCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHH----hcCCcE
Confidence            34567999999999999887765443333334469999999999998766    477753

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=90.50  E-value=0.13  Score=43.55  Aligned_cols=55  Identities=11%  Similarity=0.084  Sum_probs=42.1

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHH-HHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          254 AHALDPQKGERILDMCAAPGGKTT-AIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~-~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      .+..+++||++||=++||+.|-.. +++..++ ..+|+++|.+++|++.++    ++|.+.
T Consensus        20 ~~~a~~~~G~~VlV~GaGgvGl~a~~~ak~~G-~~~Vi~~d~~~~kl~~a~----~lGa~~   75 (174)
T d1p0fa2          20 VNTAKVTPGSTCAVFGLGGVGFSAIVGCKAAG-ASRIIGVGTHKDKFPKAI----ELGATE   75 (174)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred             HHhhCCCCCCEEEEECCCchhHHHHHHHHHcC-CceeeccCChHHHHHHHH----HcCCcE
Confidence            356689999999999988877654 4455554 468999999999997775    478754

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.21  Score=41.63  Aligned_cols=59  Identities=22%  Similarity=0.304  Sum_probs=42.9

Q ss_pred             HHHhcCCCCCCeEEEecCCCChhHHHH-HhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcceEE
Q 014571          253 TAHALDPQKGERILDMCAAPGGKTTAI-ASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKCITT  316 (422)
Q Consensus       253 v~~~L~p~pg~~VLD~CAgpGgKT~~l-a~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~nv~~  316 (422)
                      +....++++|++||=++|||.|-...+ +..+ +..+|+++|.+++|++.++    ++|.+.+..
T Consensus        18 a~~~~~~~~gd~VlI~G~G~iG~~~~~~a~~~-G~~~Vi~~d~~~~rl~~a~----~~Ga~~~~~   77 (171)
T d1pl8a2          18 ACRRGGVTLGHKVLVCGAGPIGMVTLLVAKAM-GAAQVVVTDLSATRLSKAK----EIGADLVLQ   77 (171)
T ss_dssp             HHHHHTCCTTCEEEEECCSHHHHHHHHHHHHT-TCSEEEEEESCHHHHHHHH----HTTCSEEEE
T ss_pred             HHHHhCCCCCCEEEEECCCccHHHHHHHHHHc-CCceEEeccCCHHHHHHHH----HhCCccccc
Confidence            345568999999999999887765444 4444 3458999999999998765    578764433

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=90.23  E-value=0.11  Score=47.32  Aligned_cols=35  Identities=17%  Similarity=0.265  Sum_probs=28.3

Q ss_pred             CCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcC
Q 014571          259 PQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDR  294 (422)
Q Consensus       259 p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~  294 (422)
                      .+|+.+|+|+||||||-|-.++++. +...|.|+|+
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~-~v~~V~g~~i   98 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTK   98 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECC
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhc-CCCceeEEEe
Confidence            5788899999999999999998874 2346666666

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.81  E-value=0.15  Score=42.62  Aligned_cols=53  Identities=19%  Similarity=0.121  Sum_probs=39.6

Q ss_pred             HhcCCCCCCeEEEecCCCC-hhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          255 HALDPQKGERILDMCAAPG-GKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CAgpG-gKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      ....++||++||-++||+- .-+.++|..++  .+|+++|.++.|++.++    ++|.+.
T Consensus        21 ~~~~~~~g~~vlI~GaG~vG~~a~q~ak~~G--~~vi~~~~~~~k~~~a~----~lGa~~   74 (168)
T d1piwa2          21 VRNGCGPGKKVGIVGLGGIGSMGTLISKAMG--AETYVISRSSRKREDAM----KMGADH   74 (168)
T ss_dssp             HHTTCSTTCEEEEECCSHHHHHHHHHHHHHT--CEEEEEESSSTTHHHHH----HHTCSE
T ss_pred             HHhCcCCCCEEEEECCCCcchhHHHHhhhcc--ccccccccchhHHHHhh----ccCCcE
Confidence            4468999999999988743 34555566653  68999999999987654    578753

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=89.78  E-value=0.2  Score=41.82  Aligned_cols=55  Identities=11%  Similarity=0.177  Sum_probs=40.1

Q ss_pred             HHhcCCCCCCeEEEecCCCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571          254 AHALDPQKGERILDMCAAPGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLK  312 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~  312 (422)
                      ....+++||++||=.+||++|-+...........+|++.|.+++|.+.+++    +|..
T Consensus        21 ~~~~~vk~GdtVlV~GaGG~G~~~~~~~~~~g~~~Vi~~~~~~~k~~~a~~----~Ga~   75 (176)
T d2jhfa2          21 VKVAKVTQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAKE----VGAT   75 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH----TTCS
T ss_pred             HHhhCCCCCCEEEEECCCCcHHHHHHHHHHcCCceEEeecCcHHHHHHHHH----hCCe
Confidence            345679999999999887766544433333345799999999999887654    5664

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=88.65  E-value=0.41  Score=45.94  Aligned_cols=55  Identities=11%  Similarity=0.146  Sum_probs=47.3

Q ss_pred             CCCCCCeEEEecCCCChhHHHHHhccCC-CcEEEEEcCChHHHHHHHHHHHHhCCc
Q 014571          258 DPQKGERILDMCAAPGGKTTAIASLLRD-EGEVVAVDRSHNKVMDIQKLAAEMGLK  312 (422)
Q Consensus       258 ~p~pg~~VLD~CAgpGgKT~~la~l~~~-~g~V~A~D~s~~rl~~l~~~l~r~g~~  312 (422)
                      .+.+++.++|++|--|..+..++....+ .++|+|+|.++.-.+.+++|++..+..
T Consensus       209 ~l~kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkNi~~n~~~  264 (395)
T d2py6a1         209 RFSDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVLRRYTDT  264 (395)
T ss_dssp             CCCSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHHHHTTTS
T ss_pred             CcCCCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHHHHhcccc
Confidence            3678899999999999999888876654 369999999999999999999987654

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=88.01  E-value=0.4  Score=39.54  Aligned_cols=54  Identities=22%  Similarity=0.220  Sum_probs=39.9

Q ss_pred             HHhcCCCCCCeEEEecCCCChh-HHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          254 AHALDPQKGERILDMCAAPGGK-TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgK-T~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      ....++++|++||=+++|+-|. +.++|..++  .+|+++|.++.|++.+++    +|...
T Consensus        19 ~~~~~~~~g~~vlV~G~G~vG~~~~~~ak~~G--a~vi~v~~~~~r~~~a~~----~ga~~   73 (170)
T d1e3ja2          19 CRRAGVQLGTTVLVIGAGPIGLVSVLAAKAYG--AFVVCTARSPRRLEVAKN----CGADV   73 (170)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHHH----TTCSE
T ss_pred             HHHhCCCCCCEEEEEcccccchhhHhhHhhhc--ccccccchHHHHHHHHHH----cCCcE
Confidence            3456799999999988875444 445565553  589999999999877765    67643

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.71  E-value=0.42  Score=39.45  Aligned_cols=55  Identities=13%  Similarity=0.124  Sum_probs=39.9

Q ss_pred             HHhcCCCCCCeEEEecCCCChh-HHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          254 AHALDPQKGERILDMCAAPGGK-TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgK-T~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      ....+++||++||=.+||+.|. +.+++..++ ...|++.|.+++|++.++    ++|.+.
T Consensus        21 ~~~~~~~~G~tVlI~GaGGvG~~aiq~ak~~G-~~~vi~~~~~~~k~~~ak----~lGa~~   76 (176)
T d2fzwa2          21 VNTAKLEPGSVCAVFGLGGVGLAVIMGCKVAG-ASRIIGVDINKDKFARAK----EFGATE   76 (176)
T ss_dssp             HTTTCCCTTCEEEEECCSHHHHHHHHHHHHHT-CSEEEEECSCGGGHHHHH----HHTCSE
T ss_pred             HHhhCCCCCCEEEEecchhHHHHHHHHHHHHh-cCceEEEcccHHHHHHHH----HhCCcE
Confidence            3456899999999887765443 445666654 368999999999986654    688754

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=85.62  E-value=0.51  Score=39.67  Aligned_cols=55  Identities=11%  Similarity=0.097  Sum_probs=42.5

Q ss_pred             HHhcCCCCCCeEEEecCCC-ChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          254 AHALDPQKGERILDMCAAP-GGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgp-GgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      .+..++++|++||=++||+ |--+.+++..++ ...|++.|.++.|++.++    ++|.+.
T Consensus        21 ~~~a~v~~G~~VlV~G~G~iGl~a~~~ak~~G-a~~Vi~~d~~~~r~~~a~----~~Ga~~   76 (174)
T d1e3ia2          21 INTAKVTPGSTCAVFGLGCVGLSAIIGCKIAG-ASRIIAIDINGEKFPKAK----ALGATD   76 (174)
T ss_dssp             HTTSCCCTTCEEEEECCSHHHHHHHHHHHHTT-CSEEEEECSCGGGHHHHH----HTTCSE
T ss_pred             HHhhCCCCCCEEEEECCChHHHHHHHHHHHhC-CceeeeeccchHHHHHHH----HhCCCc
Confidence            4567899999999999988 555666677664 468999999999985554    578754

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=85.04  E-value=0.43  Score=39.82  Aligned_cols=55  Identities=16%  Similarity=0.176  Sum_probs=40.4

Q ss_pred             HHhcCCCCCCeEEEecCCCChh-HHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          254 AHALDPQKGERILDMCAAPGGK-TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgK-T~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      .+.++++||++||=++||+-|. +.+++..++ ...|++.|.++.|++.+++    +|...
T Consensus        21 ~~~~~~~~g~~VlI~G~G~iG~~~~~~ak~~g-~~~v~~~~~~~~k~~~a~~----~Ga~~   76 (174)
T d1f8fa2          21 INALKVTPASSFVTWGAGAVGLSALLAAKVCG-ASIIIAVDIVESRLELAKQ----LGATH   76 (174)
T ss_dssp             HTTTCCCTTCEEEEESCSHHHHHHHHHHHHHT-CSEEEEEESCHHHHHHHHH----HTCSE
T ss_pred             HHhhCCCCCCEEEEeCCCHHHhhhhhcccccc-cceeeeeccHHHHHHHHHH----cCCeE
Confidence            4567899999999888776554 445555554 3588999999999887764    68653

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.58  E-value=0.62  Score=38.16  Aligned_cols=54  Identities=15%  Similarity=0.136  Sum_probs=39.7

Q ss_pred             HHhcCCCCCCeEEEecCCCChh-HHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          254 AHALDPQKGERILDMCAAPGGK-TTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       254 ~~~L~p~pg~~VLD~CAgpGgK-T~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      .+..++++|++||=.+||+=|. +.+++..++  .+|+++|.++.|++.++    ++|.+.
T Consensus        20 l~~~~~~~g~~VlV~GaG~vG~~~~~~ak~~G--~~Vi~~~~~~~~~~~a~----~~Ga~~   74 (166)
T d1llua2          20 LKQTNARPGQWVAISGIGGLGHVAVQYARAMG--LHVAAIDIDDAKLELAR----KLGASL   74 (166)
T ss_dssp             HHHHTCCTTCEEEEECCSHHHHHHHHHHHHTT--CEEEEEESCHHHHHHHH----HTTCSE
T ss_pred             HHHhCCCCCCEEEEeeccccHHHHHHHHHHcC--CccceecchhhHHHhhh----ccCccc
Confidence            3557899999999887776544 344555553  69999999999987654    578754

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.87  E-value=0.89  Score=37.57  Aligned_cols=53  Identities=17%  Similarity=0.125  Sum_probs=39.4

Q ss_pred             HhcCCCCCCeEEEecC--CCChhHHHHHhccCCCcEEEEEcCChHHHHHHHHHHHHhCCcc
Q 014571          255 HALDPQKGERILDMCA--APGGKTTAIASLLRDEGEVVAVDRSHNKVMDIQKLAAEMGLKC  313 (422)
Q Consensus       255 ~~L~p~pg~~VLD~CA--gpGgKT~~la~l~~~~g~V~A~D~s~~rl~~l~~~l~r~g~~n  313 (422)
                      ...+++||++||=.+|  +-|.-+.++|..++  .+|++.+.+++|.+.++    ++|.+.
T Consensus        22 ~~~~~~~g~~VlV~Ga~G~vG~~aiq~a~~~G--~~vi~~~~~~~~~~~~~----~~Ga~~   76 (174)
T d1yb5a2          22 HSACVKAGESVLVHGASGGVGLAACQIARAYG--LKILGTAGTEEGQKIVL----QNGAHE   76 (174)
T ss_dssp             TTSCCCTTCEEEEETCSSHHHHHHHHHHHHTT--CEEEEEESSHHHHHHHH----HTTCSE
T ss_pred             HHhCCCCCCEEEEEeccccccccccccccccC--ccccccccccccccccc----ccCccc
Confidence            4557899999999875  34455667787764  68999999988876654    578764