Citrus Sinensis ID: 014670

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP
cccccccccccccccccccccEEEEEcccccccEEEEEEccEEEEHHHHHHcccccccccccccccccccHHHHHHcccHHHHHHHHHHHHHHccccccccccHHHHHccccccccccccccccccccccEEccHHHHHHHHHHHcccccccccccccccEEEEcccccEEEccccEEcccccccccccccccccccccccccccEEEEEcccccccccccHHHHHHcccEEEEEEcccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEEEEccccccEEEEEcccccccccHHHHHHHHHHcccccccccEEcccccccccccccccEEEEEcccccccccccccccccccccEEEEEEEEccccEEEEEEEEEEEEEEccc
ccccEccccccccccccccccEEEEEEccEEEEEEEEEEccEEEEHHHHHHcccccccccccHHHHHccccHHHHHHcHHHHHHHHHHHHHHHEcccHHHHccHHHHHHHEEEHHHEEEEcccccccEEEEcccHHHHHHHHHHHHcccccccccccccccEEEcccccEEEccccEEccEEEEccccccccEEEEcccEEcEEEEEEEEcccccccccccHHHHHHHEEEEEEEEccEEHHHHHHHcccccccHHHHccEEEcccEEEHHHHHHHEEccccccccccHHHccccccEEccEEEEEEEcccccccEEEEEEEHHHccccHHHHHHHHHccccccccccEEEccccccccHHHccEHHHHcccccccEEccccEEcccccccEEEEEEEEEccccEEEcccEEEEEEcccc
malqsfievepdshfpiqnlpygvfkpepasvarpgvaiGEYVLDLSEiskaglfngpilkdsdcflqpnlnkflslgrPAWKEARDMLQKLLSSneatlrdnanlrqkslvpmgkvemllpmeigdytdffssmhhakncgtifrgpanavpanwfhlpiayhgrassvvisgtdivrprgqfapsgnspppfgpsqkldFELEMAAvvgpgnelgkpidvneaADHIFGVMLMNDWSARDIQaweyvplgpflgksfgttlspwivtldalepfacdspkqdpqplpylaeKISKNYDISlevqikpagkedscvvtrsNFKYLYWTLTQQLAHHTingcnlrsgdllgtgtisgpepeslgclleltwngqkplsldgftrkfledgdevtftgfckgngytvgfgtcsgkivpstp
MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSsneatlrdnanlrqkslvpmgkVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVqikpagkedscvVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGfckgngytvgfgtcsgkivpstp
MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFApsgnspppfgpsQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP
*************HFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDML*********************LVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIV*************************LEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACD*********PYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKI*****
*ALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS**
MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP
***QSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS**
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAWKEARDMxxxxxxxxxxxxxxxxxxxxxSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query420 2.2.26 [Sep-21-2011]
A5PKH3419 Fumarylacetoacetase OS=Bo yes no 0.980 0.983 0.591 1e-146
P16930419 Fumarylacetoacetase OS=Ho yes no 0.980 0.983 0.588 1e-143
P25093419 Fumarylacetoacetase OS=Ra yes no 0.980 0.983 0.579 1e-142
Q1ZXQ1427 Fumarylacetoacetase OS=Di yes no 0.988 0.971 0.572 1e-141
P35505419 Fumarylacetoacetase OS=Mu yes no 0.980 0.983 0.574 1e-140
Q00770431 Fumarylacetoacetase OS=Em yes no 0.983 0.958 0.496 1e-111
O06724301 Uncharacterized protein Y yes no 0.3 0.418 0.269 2e-05
Q59050237 Uncharacterized protein M yes no 0.197 0.350 0.279 0.0001
Q2KIB0314 Fumarylacetoacetate hydro no no 0.371 0.496 0.293 0.0002
O28058250 Uncharacterized protein A no no 0.283 0.476 0.293 0.0002
>sp|A5PKH3|FAAA_BOVIN Fumarylacetoacetase OS=Bos taurus GN=FAH PE=2 SV=1 Back     alignment and function desciption
 Score =  518 bits (1334), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 246/416 (59%), Positives = 303/416 (72%), Gaps = 4/416 (0%)

Query: 5   SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILK-DS 63
           SF+ V  DS FPI NLPYGVF        R GVAIG+ +LDLS I    LF GPIL    
Sbjct: 2   SFVPVAEDSDFPIHNLPYGVFSTRGNPRPRIGVAIGDQILDLSVIKH--LFTGPILSGHQ 59

Query: 64  DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
           D F +P LN F+ LG+ AWKEAR  LQ LLS+++A LRD+  LRQ++        M LP 
Sbjct: 60  DVFNKPTLNSFMGLGQAAWKEARAFLQNLLSASQARLRDDVELRQRAFTSQASATMYLPA 119

Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQ 183
            IGDYTDF+SS HHA N G +FRG  NA+  NW HLP+ YHGRASSVV+SGT I RP GQ
Sbjct: 120 TIGDYTDFYSSRHHATNVGVMFRGKENALMPNWLHLPVGYHGRASSVVVSGTPIRRPLGQ 179

Query: 184 FAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243
             P  + PP +G  + LDFELEMA  VGPGN+LG+PI +++A +HIFG++LMNDWSARDI
Sbjct: 180 MRPDDSKPPVYGACKLLDFELEMAFFVGPGNKLGEPIPISKAHEHIFGMVLMNDWSARDI 239

Query: 244 QAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISL 303
           Q WEYVPLGPFLGKSFGTT+SPW+V +DAL PFA  +P+QDP+PLPYL       +DI+L
Sbjct: 240 QKWEYVPLGPFLGKSFGTTISPWVVPMDALMPFAVSNPEQDPKPLPYLCHDQPYTFDINL 299

Query: 304 EVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESL 363
            V +K  G   +  + RSNFKY+YWT+ QQL HH++NGCNL+ GDLL +GTISGPEPES 
Sbjct: 300 SVALKGEGMSQAATICRSNFKYMYWTMLQQLTHHSVNGCNLQPGDLLASGTISGPEPESF 359

Query: 364 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
           GC+LEL+W G + + L +G TRKFL DGDEV  TG C+G+GY +GFG C+GK++P+
Sbjct: 360 GCMLELSWKGTRAVELGNGQTRKFLLDGDEVIMTGHCQGDGYRIGFGQCAGKVLPA 415

Bos taurus (taxid: 9913)
EC: 3EC: .EC: 7EC: .EC: 1EC: .EC: 2
>sp|P16930|FAAA_HUMAN Fumarylacetoacetase OS=Homo sapiens GN=FAH PE=1 SV=2 Back     alignment and function description
>sp|P25093|FAAA_RAT Fumarylacetoacetase OS=Rattus norvegicus GN=Fah PE=1 SV=1 Back     alignment and function description
>sp|Q1ZXQ1|FAAA_DICDI Fumarylacetoacetase OS=Dictyostelium discoideum GN=fah PE=3 SV=1 Back     alignment and function description
>sp|P35505|FAAA_MOUSE Fumarylacetoacetase OS=Mus musculus GN=Fah PE=1 SV=2 Back     alignment and function description
>sp|Q00770|FAAA_EMENI Fumarylacetoacetase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=fahA PE=1 SV=3 Back     alignment and function description
>sp|O06724|YISK_BACSU Uncharacterized protein YisK OS=Bacillus subtilis (strain 168) GN=yisK PE=2 SV=1 Back     alignment and function description
>sp|Q59050|Y1656_METJA Uncharacterized protein MJ1656 OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440) GN=MJ1656 PE=3 SV=1 Back     alignment and function description
>sp|Q2KIB0|FAHD2_BOVIN Fumarylacetoacetate hydrolase domain-containing protein 2 OS=Bos taurus GN=FAHD2 PE=2 SV=1 Back     alignment and function description
>sp|O28058|Y2225_ARCFU Uncharacterized protein AF_2225 OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2225 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
255559084421 fumarylacetoacetate hydrolase, putative 0.995 0.992 0.851 0.0
224086373419 predicted protein [Populus trichocarpa] 0.995 0.997 0.844 0.0
147771009419 hypothetical protein VITISV_033628 [Viti 0.997 1.0 0.833 0.0
359495556419 PREDICTED: fumarylacetoacetase-like [Vit 0.997 1.0 0.830 0.0
297844060421 hypothetical protein ARALYDRAFT_471353 [ 0.995 0.992 0.801 0.0
357447871421 Fumarylacetoacetase [Medicago truncatula 0.995 0.992 0.794 0.0
22329501421 fumarylacetoacetase [Arabidopsis thalian 0.995 0.992 0.799 0.0
449434018430 PREDICTED: fumarylacetoacetase-like [Cuc 0.997 0.974 0.795 0.0
388508774421 unknown [Lotus japonicus] 0.995 0.992 0.791 0.0
356555724421 PREDICTED: fumarylacetoacetase-like [Gly 0.997 0.995 0.773 0.0
>gi|255559084|ref|XP_002520564.1| fumarylacetoacetate hydrolase, putative [Ricinus communis] gi|223540224|gb|EEF41797.1| fumarylacetoacetate hydrolase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  746 bits (1927), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 356/418 (85%), Positives = 384/418 (91%)

Query: 1   MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL 60
           MAL+SFIEV PDSHFPIQNLPYGVFKPEP S  RP VAIG+Y+LDLSEI+ AGLF+GP L
Sbjct: 1   MALKSFIEVHPDSHFPIQNLPYGVFKPEPTSTPRPAVAIGDYILDLSEITLAGLFDGPTL 60

Query: 61  KDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEML 120
           K+SDCFLQPNLNKF++LGRPAWKEAR  LQKLLSS E  LRD+ NLRQKSL+P+ KVEM+
Sbjct: 61  KNSDCFLQPNLNKFIALGRPAWKEARSTLQKLLSSTEPALRDDRNLRQKSLLPLSKVEMV 120

Query: 121 LPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRP 180
           LP+ IGDYTDFFSSMHHAKNCGTIFRGP N +PANWFHLPIAYHGRASSVV+SGT IVRP
Sbjct: 121 LPIAIGDYTDFFSSMHHAKNCGTIFRGPQNPIPANWFHLPIAYHGRASSVVVSGTGIVRP 180

Query: 181 RGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSA 240
           RGQ  P+GNSP  FGPSQKLDFELEMAAVVGPGNELGKP+DVNEA DH+FG++LMNDWSA
Sbjct: 181 RGQGHPAGNSPLYFGPSQKLDFELEMAAVVGPGNELGKPVDVNEAGDHLFGLVLMNDWSA 240

Query: 241 RDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYD 300
           RDIQAWEYVPLGPFLGKSFGTT+SPWIVTLDALEPFACD+PKQDP PLPYLAEKISKNYD
Sbjct: 241 RDIQAWEYVPLGPFLGKSFGTTISPWIVTLDALEPFACDAPKQDPHPLPYLAEKISKNYD 300

Query: 301 ISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEP 360
           ISLEVQIK AGKED+CVVTRSNFK+LYWTLTQQLAHHTINGCNLR GDLLGTGTISGPEP
Sbjct: 301 ISLEVQIKAAGKEDACVVTRSNFKHLYWTLTQQLAHHTINGCNLRPGDLLGTGTISGPEP 360

Query: 361 ESLGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
           ES GCLLELTWNGQKPLSL+G  RKFLEDGDEV F+G  KG+GY VGFGTC GKI+PS
Sbjct: 361 ESYGCLLELTWNGQKPLSLNGTERKFLEDGDEVIFSGCSKGDGYNVGFGTCFGKILPS 418

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224086373|ref|XP_002307870.1| predicted protein [Populus trichocarpa] gi|118481189|gb|ABK92546.1| unknown [Populus trichocarpa] gi|222853846|gb|EEE91393.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147771009|emb|CAN77935.1| hypothetical protein VITISV_033628 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359495556|ref|XP_003635021.1| PREDICTED: fumarylacetoacetase-like [Vitis vinifera] gi|297741817|emb|CBI33122.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|297844060|ref|XP_002889911.1| hypothetical protein ARALYDRAFT_471353 [Arabidopsis lyrata subsp. lyrata] gi|297335753|gb|EFH66170.1| hypothetical protein ARALYDRAFT_471353 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357447871|ref|XP_003594211.1| Fumarylacetoacetase [Medicago truncatula] gi|87241152|gb|ABD33010.1| Fumarylacetoacetase [Medicago truncatula] gi|355483259|gb|AES64462.1| Fumarylacetoacetase [Medicago truncatula] Back     alignment and taxonomy information
>gi|22329501|ref|NP_172669.2| fumarylacetoacetase [Arabidopsis thaliana] gi|20334820|gb|AAM16166.1| At1g12050/F12F1_8 [Arabidopsis thaliana] gi|332190709|gb|AEE28830.1| fumarylacetoacetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449434018|ref|XP_004134793.1| PREDICTED: fumarylacetoacetase-like [Cucumis sativus] gi|449516307|ref|XP_004165188.1| PREDICTED: fumarylacetoacetase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|388508774|gb|AFK42453.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356555724|ref|XP_003546180.1| PREDICTED: fumarylacetoacetase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
TAIR|locus:2008845421 FAH "AT1G12050" [Arabidopsis t 0.995 0.992 0.777 2.6e-182
UNIPROTKB|A5PKH3419 FAH "Fumarylacetoacetase" [Bos 0.980 0.983 0.581 2.7e-132
UNIPROTKB|F1MYZ7419 FAH "Fumarylacetoacetase" [Bos 0.980 0.983 0.581 2.7e-132
UNIPROTKB|F1NYW8421 FAH "Uncharacterized protein" 0.980 0.978 0.596 4.4e-132
UNIPROTKB|F1RIF3419 FAH "Uncharacterized protein" 0.980 0.983 0.584 8.1e-131
UNIPROTKB|P16930419 FAH "Fumarylacetoacetase" [Hom 0.980 0.983 0.579 2.8e-130
RGD|61932419 Fah "fumarylacetoacetate hydro 0.980 0.983 0.567 7.6e-128
DICTYBASE|DDB_G0271094427 fah "fumarylacetoacetase" [Dic 0.988 0.971 0.562 5.3e-127
MGI|MGI:95482419 Fah "fumarylacetoacetate hydro 0.980 0.983 0.564 1.4e-126
UNIPROTKB|E2RS63418 FAH "Uncharacterized protein" 0.983 0.988 0.569 1.8e-126
TAIR|locus:2008845 FAH "AT1G12050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1769 (627.8 bits), Expect = 2.6e-182, P = 2.6e-182
 Identities = 325/418 (77%), Positives = 364/418 (87%)

Query:     3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKD 62
             L+SFI+V  DSHFPIQNLPYGVFKPE  S  RP VAIG+ VLDLS IS+AGLF+G ILKD
Sbjct:     4 LKSFIDVGSDSHFPIQNLPYGVFKPESNSTPRPAVAIGDLVLDLSAISEAGLFDGLILKD 63

Query:    63 SDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLP 122
             +DCFLQPNLNKFL++GRPAWKEAR  LQ++LSSNE  LRDN  LR+KS   M KVEM++P
Sbjct:    64 ADCFLQPNLNKFLAMGRPAWKEARSTLQRILSSNEPILRDNDVLRRKSFHQMSKVEMIVP 123

Query:   123 MEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRG 182
             M IGDYTDFF+SMHHAKNCG +FRGP NA+  NWF LPIAYHGRASS+VISGTDI+RPRG
Sbjct:   124 MVIGDYTDFFASMHHAKNCGLMFRGPENAINPNWFRLPIAYHGRASSIVISGTDIIRPRG 183

Query:   183 QFAXXXXXXXXXXXXQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARD 242
             Q              +KLDFELEMAAVVGPGNELGKPIDVN AADHIFG++LMNDWSARD
Sbjct:   184 QGHPQGNSEPYFGPSKKLDFELEMAAVVGPGNELGKPIDVNNAADHIFGLLLMNDWSARD 243

Query:   243 IQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDIS 302
             IQAWEYVPLGPFLGKSFGTT+SPWIVTLDALEPF C +PKQDP PLPYLAEK S NYDIS
Sbjct:   244 IQAWEYVPLGPFLGKSFGTTISPWIVTLDALEPFGCQAPKQDPPPLPYLAEKESVNYDIS 303

Query:   303 LEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPES 362
             LEVQ+KP+G++DSCV+T+SNF+ LYWT+TQQLAHHT+NGCNLR GDLLGTGTISGPEP+S
Sbjct:   304 LEVQLKPSGRDDSCVITKSNFQNLYWTITQQLAHHTVNGCNLRPGDLLGTGTISGPEPDS 363

Query:   363 LGCLLELTWNGQKPLSLDGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPSTP 420
              GCLLELTWNGQKPLSL+G T+ FLEDGD+VTF+G CKG+GY VGFGTC+GKIVPS P
Sbjct:   364 YGCLLELTWNGQKPLSLNGTTQTFLEDGDQVTFSGVCKGDGYNVGFGTCTGKIVPSPP 421
GO:0004334 "fumarylacetoacetase activity" evidence=ISS;IDA
GO:0009072 "aromatic amino acid family metabolic process" evidence=ISS
GO:0005829 "cytosol" evidence=IDA
GO:0015996 "chlorophyll catabolic process" evidence=RCA
GO:1902000 "homogentisate catabolic process" evidence=IDA
UNIPROTKB|A5PKH3 FAH "Fumarylacetoacetase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1MYZ7 FAH "Fumarylacetoacetase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1NYW8 FAH "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F1RIF3 FAH "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P16930 FAH "Fumarylacetoacetase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|61932 Fah "fumarylacetoacetate hydrolase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0271094 fah "fumarylacetoacetase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
MGI|MGI:95482 Fah "fumarylacetoacetate hydrolase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RS63 FAH "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A5PKH3FAAA_BOVIN3, ., 7, ., 1, ., 20.59130.98090.9832yesno
P35505FAAA_MOUSE3, ., 7, ., 1, ., 20.57450.98090.9832yesno
Q1ZXQ1FAAA_DICDI3, ., 7, ., 1, ., 20.57240.98800.9718yesno
P25093FAAA_RAT3, ., 7, ., 1, ., 20.57930.98090.9832yesno
P16930FAAA_HUMAN3, ., 7, ., 1, ., 20.58890.98090.9832yesno
Q00770FAAA_EMENI3, ., 7, ., 1, ., 20.49640.98330.9582yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.7.1.20.946
3rd Layer3.7.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0024007102
SubName- Full=Putative uncharacterized protein; (420 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.I.4943.1
homogentisate 1,2-dioxygenase (EC-1.13.11.5) (433 aa)
• ••  • 0.942
gw1.VII.3485.1
succinate dehydrogenase (EC-1.3.5.1) (633 aa)
     •  0.800
eugene3.00570187
succinate dehydrogenase (EC-1.3.5.1) (638 aa)
     •  0.800
eugene3.00021795
aspartate ammonia-lyase (EC-4.2.1.2) (490 aa)
     •  0.800
estExt_fgenesh4_pg.C_LG_I2224
succinate dehydrogenase (EC-1.3.5.1) (285 aa)
     •  0.800
fgenesh4_pm.C_LG_II000277
4-hydroxyphenylpyruvate dioxygenase (EC-1.13.11.27) (444 aa)
• ••  • 0.715
eugene3.00051120
4-hydroxyphenylpyruvate dioxygenase (343 aa)
• •     0.545
fgenesh4_pm.C_scaffold_1250000001
Predicted protein (221 aa)
•    •• 0.444

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
PLN02856424 PLN02856, PLN02856, fumarylacetoacetase 0.0
TIGR01266415 TIGR01266, fum_ac_acetase, fumarylacetoacetase 0.0
pfam09298101 pfam09298, DUF1969, Domain of unknown function (DU 1e-40
pfam01557207 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA 2e-35
COG0179266 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxo 3e-33
>gnl|CDD|215461 PLN02856, PLN02856, fumarylacetoacetase Back     alignment and domain information 
 Score =  796 bits (2057), Expect = 0.0
 Identities = 313/422 (74%), Positives = 351/422 (83%), Gaps = 2/422 (0%)

Query: 1   MALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL 60
             L+SFI+V PDS FPIQNLPYGVF PE  +  RPGVAIG+YVLDLS +S+AGLF+GP+L
Sbjct: 3   SPLKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLL 62

Query: 61  KDSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEML 120
            DSDCF QP LNKF+++GRPAWKEAR  LQ+LLS++E  LRDN+ LR+K+  PM  VEML
Sbjct: 63  SDSDCFSQPTLNKFMAMGRPAWKEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEML 122

Query: 121 LPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRP 180
           LP  IGDYTDFFSS  HA N GT+FRGP NA+  NW HLPI YHGRASSVV SGTDI RP
Sbjct: 123 LPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWLHLPIGYHGRASSVVPSGTDIRRP 182

Query: 181 RGQFAP-SGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWS 239
           RGQ  P  G+S P FGPS KLDFELEMAA VGPGNELGKPI VNEA DHIFG++LMNDWS
Sbjct: 183 RGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWS 242

Query: 240 ARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNY 299
           ARDIQ WEYVPLGPFLGKSF TT+SPWIVTLDALEPF CD+P QDP PLPYLAEK  K+Y
Sbjct: 243 ARDIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSY 302

Query: 300 DISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPE 359
           DISLEV IKPAG+  + VV RSNFK+LYWTL QQLAHHT+NGCNLR GDLLG+GTISGPE
Sbjct: 303 DISLEVAIKPAGQSKASVVCRSNFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPE 362

Query: 360 PESLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
           P SLGCLLELTW G + +SL  G  RKFLEDGDEV  +G+CKG+GY VGFGTCSGK++P+
Sbjct: 363 PGSLGCLLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCKGDGYRVGFGTCSGKVLPA 422

Query: 419 TP 420
            P
Sbjct: 423 LP 424

Length = 424
>gnl|CDD|162276 TIGR01266, fum_ac_acetase, fumarylacetoacetase Back     alignment and domain information
>gnl|CDD|220168 pfam09298, DUF1969, Domain of unknown function (DUF1969) Back     alignment and domain information
>gnl|CDD|216570 pfam01557, FAA_hydrolase, Fumarylacetoacetate (FAA) hydrolase family Back     alignment and domain information
>gnl|CDD|223257 COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 420
PLN02856424 fumarylacetoacetase 100.0
TIGR01266415 fum_ac_acetase fumarylacetoacetase. This enzyme ca 100.0
KOG2843420 consensus Fumarylacetoacetase [Carbohydrate transp 100.0
COG0179266 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-en 100.0
TIGR02303245 HpaG-C-term 4-hydroxyphenylacetate degradation bif 100.0
KOG1535217 consensus Predicted fumarylacetoacetate hydralase 100.0
PRK15203 429 4-hydroxyphenylacetate degradation bifunctional is 100.0
PRK10691219 hypothetical protein; Provisional 100.0
PRK15203429 4-hydroxyphenylacetate degradation bifunctional is 100.0
PRK12764 500 hypothetical protein; Provisional 100.0
PF01557218 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase 100.0
TIGR02305205 HpaG-N-term 4-hydroxyphenylacetate degradation bif 100.0
TIGR03220255 catechol_dmpE 2-oxopent-4-enoate hydratase. Member 99.88
PRK11342262 mhpD 2-keto-4-pentenoate hydratase; Provisional 99.82
PF09298107 FAA_hydrolase_N: Fumarylacetoacetase N-terminal; I 99.75
TIGR02312267 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase. T 99.64
COG3970379 Fumarylacetoacetate (FAA) hydrolase family protein 99.6
TIGR03218263 catechol_dmpH 4-oxalocrotonate decarboxylase. Memb 99.26
COG3971264 2-keto-4-pentenoate hydratase [Secondary metabolit 98.96
COG3802333 GguC Uncharacterized protein conserved in bacteria 98.47
PF11010194 DUF2848: Protein of unknown function (DUF2848); In 97.86
PF1037050 DUF2437: Domain of unknown function (DUF2437); Int 88.61
>PLN02856 fumarylacetoacetase Back     alignment and domain information 
Probab=100.00  E-value=1.8e-106  Score=822.61  Aligned_cols=418  Identities=75%  Similarity=1.301  Sum_probs=386.2

Q ss_pred             cccccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCCccCCCccCcccHHHHHhCCchhH
Q 014670            3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILKDSDCFLQPNLNKFLSLGRPAW   82 (420)
Q Consensus         3 ~~s~~~~~~~~~f~~~n~p~~~f~~~~~~~~r~Gv~~gd~viDL~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~g~~~~   82 (420)
                      ++|||+++++|||||+|||||+||+.+++.+|+||++||+|+||+++...+++.+.....+.+|.+++||+|+++|+..|
T Consensus         5 ~~swv~~~~~~~F~i~NlP~Gvfs~~~~~~~r~gvaigd~vldl~~~~~~~~~~~~~~~~~~~f~~~~Ln~f~alg~~~~   84 (424)
T PLN02856          5 LKSFIDVAPDSDFPIQNLPYGVFSPESGATPRPGVAIGDYVLDLSALSEAGLFDGPLLSDSDCFSQPTLNKFMAMGRPAW   84 (424)
T ss_pred             ccccccCCCCCCCCccccCeeEEECCCCCCceeEEEeCCEEEeHHHHHhcCCCCcccccccccccCcCHHHHHhCCHHHH
Confidence            57999999999999999999999998777999999999999999999877666542212246899999999999999999


Q ss_pred             HHHHHHHHHHHhccchhhhhhhhhcccccccCCCcEecCCcccCCcceEeecHHHHHHhccccCCCCCCCCCCCCCCcee
Q 014670           83 KEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIA  162 (420)
Q Consensus        83 ~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~l~~P~~~~~~~~~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~~  162 (420)
                      +++|+.|+.++......++++..+....++|+++|+|++|+.+++|+||++|++|++|+|+.|++++++++|+|++.|++
T Consensus        85 ~~~R~~l~~~l~~~~~~l~~~~~~~~~~l~~~~~v~l~~P~~~~~~~df~~~~~Ha~n~g~~fr~~~~~l~p~~~~~Pv~  164 (424)
T PLN02856         85 KEARSTLQRLLSADEPALRDNSELRKKAFHPMSDVEMLLPAVIGDYTDFFSSREHATNVGTMFRGPENALNPNWLHLPIG  164 (424)
T ss_pred             HHHHHHHHHHhhcCCcccccchhhhccceeehhhceEcCCCccceEEEEecHHHHHHHhhhhccCCccCCCcccccCCCE
Confidence            99999999999877665555566666789999999999999999999999999999999999888878889999999999


Q ss_pred             eecCCceeeeCCCceeCCCCCcCC-CCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhhHhhceeEEEEeeccchh
Q 014670          163 YHGRASSVVISGTDIVRPRGQFAP-SGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSAR  241 (420)
Q Consensus       163 f~k~~ssvv~~g~~I~~P~~~~~~-~~~~~~~~~~s~~lD~E~ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~SaR  241 (420)
                      |+|++|||+++|++|++|.+|+++ .+...|.|++++++|||+|||+||||++++|++|++++|++||||||++||||||
T Consensus       165 y~gr~sSvv~sg~~I~rP~gq~~~~~~~~~p~f~~s~~lDyE~ELavVIGk~~~~g~~I~~~~A~d~IfGytl~ND~SAR  244 (424)
T PLN02856        165 YHGRASSVVPSGTDIRRPRGQLHPNDGSSRPYFGPSAKLDFELEMAAFVGPGNELGKPIPVNEAKDHIFGLVLMNDWSAR  244 (424)
T ss_pred             EcCCCceEEcCCCceeCCCCCccCCCCCCCCcccCcCceEEEEEEEEEECcCccccCCCCHHHHHhhheEEEEeeechhh
Confidence            999999999999999999988765 3334488999999999999999999998889999999999999999999999999


Q ss_pred             hhhhhhcCCCCCccccccCCCCCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEec
Q 014670          242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRS  321 (420)
Q Consensus       242 d~Q~~~~~~lg~~~gKsfdt~iGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~  321 (420)
                      |+|.|||+++|||+||+|+|+|||||||.|+++++++..+.++++.++||++.++.+++|+|+|+++.+++.||+++|++
T Consensus       245 DiQ~wE~~plgpf~gKsF~t~igPwIVt~dal~p~r~~~~~~dp~~l~yl~~~~~~~~~i~l~v~v~~nG~~ng~~~q~~  324 (424)
T PLN02856        245 DIQKWEYVPLGPFLGKSFATTISPWIVTLDALEPFRCDAPAQDPPPLPYLAEKNRKSYDISLEVAIKPAGQSKASVVCRS  324 (424)
T ss_pred             hhhhhhcccCCcccccCCCCCCcCeEEcccccccccccccccCcccccccccccccceeEEEEEEEeeCCcccceeEEcC
Confidence            99999999999999999999999999999999999998899999999999999999999999998876665688999999


Q ss_pred             chhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCccccccCCC-CCccCCCCCEEEEEEEEe
Q 014670          322 NFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCK  400 (420)
Q Consensus       322 ~t~~m~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~-~~~~L~~GD~V~~~~~~~  400 (420)
                      |+++|||+++|||+|++|++|||+|||||+||||+|+++.+.||.+|++++|++++++.++ .++||+|||+|+|+++|+
T Consensus       325 nt~~M~ws~~qlIah~~s~g~tL~pGDLi~TGTpsG~~~~~~G~llElt~~G~~p~~l~~g~~r~fL~dGD~V~l~g~~~  404 (424)
T PLN02856        325 NFKHLYWTLAQQLAHHTVNGCNLRPGDLLGSGTISGPEPGSLGCLLELTWAGSREVSLEGGTRRKFLEDGDEVVLSGWCK  404 (424)
T ss_pred             CHHHcCCCHHHHHHHHHhCCeecCCCCEEEeCCCCCCccCCCCCEEEEEeCCccceEeccCCccccCCCCCEEEEEEEEC
Confidence            9999999999999987799999999999999999999999999999999999999999888 799999999999999999


Q ss_pred             CCCceeeeeeeeeEEeeCCC
Q 014670          401 GNGYTVGFGTCSGKIVPSTP  420 (420)
Q Consensus       401 ~~~~~~g~G~~~~~v~~~~~  420 (420)
                      ++|.+||||+|+++|+||++
T Consensus       405 ~~g~~igfG~~~g~v~pa~~  424 (424)
T PLN02856        405 GDGYRVGFGTCSGKVLPALP  424 (424)
T ss_pred             CCCccEeeeeeeeEEecCCC
Confidence            99999999999999999975

>TIGR01266 fum_ac_acetase fumarylacetoacetase Back     alignment and domain information
>KOG2843 consensus Fumarylacetoacetase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0179 MhpD 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>TIGR02303 HpaG-C-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, C-terminal subunit Back     alignment and domain information
>KOG1535 consensus Predicted fumarylacetoacetate hydralase [General function prediction only] Back     alignment and domain information
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional Back     alignment and domain information
>PRK10691 hypothetical protein; Provisional Back     alignment and domain information
>PRK15203 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; Provisional Back     alignment and domain information
>PRK12764 hypothetical protein; Provisional Back     alignment and domain information
>PF01557 FAA_hydrolase: Fumarylacetoacetate (FAA) hydrolase family Mutations in Swiss:P16930 cause inherited tyrosinemia type I Back     alignment and domain information
>TIGR02305 HpaG-N-term 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase, N-terminal subunit Back     alignment and domain information
>TIGR03220 catechol_dmpE 2-oxopent-4-enoate hydratase Back     alignment and domain information
>PRK11342 mhpD 2-keto-4-pentenoate hydratase; Provisional Back     alignment and domain information
>PF09298 FAA_hydrolase_N: Fumarylacetoacetase N-terminal; InterPro: IPR015377 Fumarylacetoacetase (3 Back     alignment and domain information
>TIGR02312 HpaH 2-oxo-hepta-3-ene-1,7-dioic acid hydratase Back     alignment and domain information
>COG3970 Fumarylacetoacetate (FAA) hydrolase family protein [General function prediction only] Back     alignment and domain information
>TIGR03218 catechol_dmpH 4-oxalocrotonate decarboxylase Back     alignment and domain information
>COG3971 2-keto-4-pentenoate hydratase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>COG3802 GguC Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF11010 DUF2848: Protein of unknown function (DUF2848); InterPro: IPR021269 This bacterial family of proteins has no known function Back     alignment and domain information
>PF10370 DUF2437: Domain of unknown function (DUF2437); InterPro: IPR018833 This entry represents the N-terminal 50 amino acids of a group of bacterial proteins often annotated as fumarylacetoacetate hydrolase-containing enzymes Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
1hyo_A421 Crystal Structure Of Fumarylacetoacetate Hydrolase 1e-137
1qqj_A419 Crystal Structure Of Mouse Fumarylacetoacetate Hydr 1e-137
1qco_A423 Crystal Structure Of Fumarylacetoacetate Hydrolase 1e-137
1qcn_A421 Crystal Structure Of Fumarylacetoacetate Hydrolase 1e-131
>pdb|1HYO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Complexed With 4-(Hydroxymethylphosphinoyl)-3-Oxo-Butanoic Acid Length = 421 Back     alignment and structure 
Iteration: 1

 Score =  484 bits (1246), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 235/416 (56%), Positives = 288/416 (69%), Gaps = 4/416 (0%)
Query: 5   SFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPIL-KDS 63
           SFI V  DS FPIQNLPYGVF  +     R GVAIG+ +LDLS I    LF GP L K  
Sbjct: 4   SFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQ 61
Query: 64  DCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPM 123
             F +  LN F+ LG+ AWKEAR  LQ LLS+++A LRD+  LRQ++        M LP 
Sbjct: 62  HVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPA 121
Query: 124 EIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQ 183
            IGDYTDF+SS  HA N G +FRG  NA+  NW HLP+ YHGRASS+V+SGT I RP GQ
Sbjct: 122 TIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQ 181
Query: 184 FAXXXXXXXXXXXXQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDI 243
                         + LD ELEMA  VGPGN  G+PI +++A +HIFG++LMNDWSARDI
Sbjct: 182 MRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDI 241
Query: 244 QAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISL 303
           Q WEYVPLGPFLGKSFGTT+SPW+V +DAL PF   +PKQDP+PLPYL       +DI+L
Sbjct: 242 QQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINL 301
Query: 304 EVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESL 363
            V +K  G   +  + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG +PES 
Sbjct: 302 SVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESF 361
Query: 364 GCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
           G +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct: 362 GSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417
>pdb|1QQJ|A Chain A, Crystal Structure Of Mouse Fumarylacetoacetate Hydrolase Refined At 1.55 Angstrom Resolution Length = 419 Back     alignment and structure
>pdb|1QCO|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Complexed With Fumarate And Acetoacetate Length = 423 Back     alignment and structure
>pdb|1QCN|A Chain A, Crystal Structure Of Fumarylacetoacetate Hydrolase Length = 421 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
1hyo_A421 Fumarylacetoacetate hydrolase; beta-sandwich roll; 0.0
3lzk_A359 Fumarylacetoacetate hydrolase family protein; stru 3e-34
3r6o_A329 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg 4e-19
1wzo_A246 HPCE; structural genomics, riken structural genomi 2e-14
3rr6_A265 Putative uncharacterized protein; structural genom 2e-14
1gtt_A429 4-hydroxyphenylacetate degradation bifunctional is 5e-14
1gtt_A 429 4-hydroxyphenylacetate degradation bifunctional is 1e-12
2dfu_A264 Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 7e-14
1saw_A225 Hypothetical protein FLJ36880; structural genomics 9e-14
3l53_A224 Putative fumarylacetoacetate isomerase/hydrolase; 3e-13
3s52_A221 Putative fumarylacetoacetate hydrolase family Pro; 3e-13
2q18_X293 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami 4e-13
1nkq_A259 Hypothetical 28.8 kDa protein in PSD1-SKO1 interge 1e-10
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A Length = 421 Back     alignment and structure
 Score =  514 bits (1325), Expect = 0.0
 Identities = 234/418 (55%), Positives = 290/418 (69%), Gaps = 2/418 (0%)

Query: 2   ALQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPILK 61
              SFI V  DS FPIQNLPYGVF  +     R GVAIG+ +LDLS I         + K
Sbjct: 1   GSMSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKHLFTGPA-LSK 59

Query: 62  DSDCFLQPNLNKFLSLGRPAWKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLL 121
               F +  LN F+ LG+ AWKEAR  LQ LLS+++A LRD+  LRQ++        M L
Sbjct: 60  HQHVFDETTLNNFMGLGQAAWKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHL 119

Query: 122 PMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPR 181
           P  IGDYTDF+SS  HA N G +FRG  NA+  NW HLP+ YHGRASS+V+SGT I RP 
Sbjct: 120 PATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPM 179

Query: 182 GQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSAR 241
           GQ  P  + PP +G  + LD ELEMA  VGPGN  G+PI +++A +HIFG++LMNDWSAR
Sbjct: 180 GQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSAR 239

Query: 242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDI 301
           DIQ WEYVPLGPFLGKSFGTT+SPW+V +DAL PF   +PKQDP+PLPYL       +DI
Sbjct: 240 DIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDI 299

Query: 302 SLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPE 361
           +L V +K  G   +  + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG +PE
Sbjct: 300 NLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPE 359

Query: 362 SLGCLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
           S G +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct: 360 SFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 417
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti} Length = 359 Back     alignment and structure
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus} Length = 329 Back     alignment and structure
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus} Length = 246 Back     alignment and structure
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A Length = 265 Back     alignment and structure
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429 Back     alignment and structure
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Length = 429 Back     alignment and structure
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus} Length = 264 Back     alignment and structure
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Length = 225 Back     alignment and structure
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} PDB: 1nr9_A Length = 221 Back     alignment and structure
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A Length = 293 Back     alignment and structure
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1 Length = 259 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query420
1hyo_A421 Fumarylacetoacetate hydrolase; beta-sandwich roll; 100.0
3lzk_A359 Fumarylacetoacetate hydrolase family protein; stru 100.0
3r6o_A329 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssg 100.0
4dbf_A288 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxa 100.0
3rr6_A265 Putative uncharacterized protein; structural genom 100.0
2dfu_A264 Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 100.0
1wzo_A246 HPCE; structural genomics, riken structural genomi 100.0
3l53_A224 Putative fumarylacetoacetate isomerase/hydrolase; 100.0
3s52_A221 Putative fumarylacetoacetate hydrolase family Pro; 100.0
2q18_X293 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-fami 100.0
1saw_A225 Hypothetical protein FLJ36880; structural genomics 100.0
1gtt_A429 4-hydroxyphenylacetate degradation bifunctional is 100.0
1nkq_A259 Hypothetical 28.8 kDa protein in PSD1-SKO1 interge 100.0
1gtt_A 429 4-hydroxyphenylacetate degradation bifunctional is 100.0
2eb4_A267 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60 100.0
2wqt_A270 2-keto-4-pentenoate hydratase; lyase, dodecahedral 100.0
>1hyo_A Fumarylacetoacetate hydrolase; beta-sandwich roll; HET: HBU; 1.30A {Mus musculus} SCOP: b.34.8.1 d.177.1.1 PDB: 1qcn_A 2hzy_A* 1qco_A 1qqj_A Back     alignment and structure
Probab=100.00  E-value=3.5e-95  Score=745.71  Aligned_cols=415  Identities=57%  Similarity=1.048  Sum_probs=368.3

Q ss_pred             cccccccCCCCCCCCCCCCeEEEeeCCCCCceeEEEECCeEEechhhhhcCCCCCCC-ccCCCccCcccHHHHHhCCchh
Q 014670            3 LQSFIEVEPDSHFPIQNLPYGVFKPEPASVARPGVAIGEYVLDLSEISKAGLFNGPI-LKDSDCFLQPNLNKFLSLGRPA   81 (420)
Q Consensus         3 ~~s~~~~~~~~~f~~~n~p~~~f~~~~~~~~r~Gv~~gd~viDL~~~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~g~~~   81 (420)
                      .+|||+++.+++|||+|||||+|++..++.+|+||++||.|+||+++..  .+..+. ...++.|.+++|++||++|++.
T Consensus         2 ~~s~~~~~~~~~f~~~nlp~g~f~~~~~~~~r~Gv~igd~v~DL~~~~~--~~~~~~~~~~~~~~~~~tL~~~l~~g~~~   79 (421)
T 1hyo_A            2 SMSFIPVAEDSDFPIQNLPYGVFSTQSNPKPRIGVAIGDQILDLSVIKH--LFTGPALSKHQHVFDETTLNNFMGLGQAA   79 (421)
T ss_dssp             -CCSSCCCTTCSCCTTTCCEEEEECSSCCSCEEEEEETTEEEETTTTGG--GCCSTTTTTCGGGGGSSSSHHHHHHCHHH
T ss_pred             CcccccCCCCCCCCccCceEEEEEeCCCCceEEEEEeCCEEEeHHHhHh--hcccccccccccccCCcCHHHHHhcChHH
Confidence            4799999999999999999999998777889999999999999987654  121111 0123467789999999999999


Q ss_pred             HHHHHHHHHHHHhccchhhhhhhhhcccccccCCCcEecCCcccCCcceEeecHHHHHHhccccCCCCCCCCCCCCCCce
Q 014670           82 WKEARDMLQKLLSSNEATLRDNANLRQKSLVPMGKVEMLLPMEIGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPI  161 (420)
Q Consensus        82 ~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~v~l~~P~~~~~~~~~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~  161 (420)
                      |.++|+.++++++...+.++++..+.....+++++|+|++|+.+++|+|||+|++|++|+++.+++++++.+|+|++.|+
T Consensus        80 ~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~v~ll~P~~~~~y~df~~~~~Ha~~~g~~~r~~~~~~~p~~~~~Pv  159 (421)
T 1hyo_A           80 WKEARASLQNLLSASQARLRDDKELRQRAFTSQASATMHLPATIGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPV  159 (421)
T ss_dssp             HHHHHHHHHHHHTTSSTHHHHCHHHHHHHEEESTTCEEECSSCCSCEEEECCCHHHHHHHHHHHHCGGGCSCTTTTTSCC
T ss_pred             HHHHHHHHHHHhhccCccccccccccccccccHhHCeEcCCcccCcEEEEechHHHHHHHHhhhccccccCCCCcCCCCE
Confidence            99999999988765433333333333345789999999999999999999999999999998877776777899999999


Q ss_pred             eeecCCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceeceEEEEEEcCCCCCCCCCChhhHhhceeEEEEeeccchh
Q 014670          162 AYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSAR  241 (420)
Q Consensus       162 ~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~SaR  241 (420)
                      +|+|++||++++|++|.+|.+++++.++..|.+.++.++|||+||||||||.+++|++|++++|++||||||++||||+|
T Consensus       160 ~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~p~~~~s~~lD~E~ELavvIG~~~~~g~~v~~~~A~~~I~Gy~l~ND~SaR  239 (421)
T 1hyo_A          160 GYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSAR  239 (421)
T ss_dssp             EEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBEEEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEH
T ss_pred             EEEcccceEEcCCCeEECCCCcccCccccccccccccCceEEEEEEEEECcccccCCCCCHHHHHHhhcEEEEEEeccHH
Confidence            99999999999999999999877655555577777999999999999999998889999999999999999999999999


Q ss_pred             hhhhhhcCCCCCccccccCCCCCCccccccccCCccCCCCCCCCCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEec
Q 014670          242 DIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRS  321 (420)
Q Consensus       242 d~Q~~~~~~lg~~~gKsfdt~iGPwivt~del~~~~~~~~~~~~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~  321 (420)
                      |+|.|+++++||++||+|+|+|||||||+|+++++++..++++|++++||.+.+++.++|++++++|++++.||+++|++
T Consensus       240 diQ~~e~~plg~~~aK~f~t~iGPwivt~d~l~p~~~~~~~~~~~~l~~l~~~~~~~~~l~l~~~vN~~~~~~Ge~~q~~  319 (421)
T 1hyo_A          240 DIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRS  319 (421)
T ss_dssp             HHHHHHCTTTCCCHHHHTCEEECSCBEEHHHHGGGEECCCCCSSCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEE
T ss_pred             hhhhhhcccCCCccccCcCCCCCCeecchhhcccccccccccCCcccccccccCCCccceEEEEEEecCCCCCCEEEEec
Confidence            99999999999999999999999999999999999998899999999999988888778888888766555559999999


Q ss_pred             chhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCCceEEEEecCccccccCCC-CCccCCCCCEEEEEEEEe
Q 014670          322 NFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLGCLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCK  400 (420)
Q Consensus       322 ~t~~m~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G~~le~~~~G~~~~~l~~~-~~~~L~~GD~V~~~~~~~  400 (420)
                      |+++|+|+++|||+|++|++|+|+|||||+||||+|+++.+.||.+|++++|++++++..+ +++|||+||+|+++++|+
T Consensus       320 ~~~~m~~~~~~lIa~lss~g~tL~pGDlI~TGTpsG~~~~~~G~~lE~~~~G~~~v~l~~g~~~~fL~~GD~V~~~~~~~  399 (421)
T 1hyo_A          320 NFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFGSMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQ  399 (421)
T ss_dssp             ETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCCBHHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEE
T ss_pred             CHHhhcCCHHHHHHHHHHCCCccCCCCEEEcCCCCCCCCCCCcceEEEEecCcceeeccCCCCCccCCCCCEEEEEEEEC
Confidence            9999999999999998669999999999999999999999999999999999999999877 789999999999999998


Q ss_pred             CCCceeeeeeeeeEEeeCC
Q 014670          401 GNGYTVGFGTCSGKIVPST  419 (420)
Q Consensus       401 ~~~~~~g~G~~~~~v~~~~  419 (420)
                      ++|.+||||+|+|+|+++.
T Consensus       400 ~~g~~igfG~~~~~V~~a~  418 (421)
T 1hyo_A          400 GDGYRVGFGQCAGKVLPAL  418 (421)
T ss_dssp             CSSCEEEEEEEEEEEECCC
T ss_pred             CCCceeeeeeeEEEEecCC
Confidence            8999999999999999985
>3lzk_A Fumarylacetoacetate hydrolase family protein; structural genomics, PSI-2, protein structure initiative; 1.90A {Sinorhizobium meliloti} Back     alignment and structure
>3r6o_A 2-hydroxyhepta-2,4-diene-1, 7-dioateisomerase; ssgcid, struc genomics, seattle structural genomics center for infectious isomerase; 1.95A {Mycobacterium abscessus} Back     alignment and structure
>4dbf_A 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase; oxaloacetate decarboxylase; 1.90A {Corynebacterium glutamicum} PDB: 4dbh_A Back     alignment and structure
>3rr6_A Putative uncharacterized protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 1.58A {Mycobacterium abscessus} PDB: 3qdf_A Back     alignment and structure
>2dfu_A Probable 2-hydroxyhepta-2,4-diene-1,7-dioate ISOM; 2-hydroxyhepta-2,4-diene-1,7-dioate isomerase, structural GE NPPSFA; 2.20A {Thermus thermophilus} Back     alignment and structure
>1wzo_A HPCE; structural genomics, riken structural genomics/proteom initiative, RSGI, NPPSFA, isomerase; 1.90A {Thermus thermophilus} Back     alignment and structure
>3s52_A Putative fumarylacetoacetate hydrolase family Pro; csgid, structural genomics, center for structural genomics O infectious diseases; 2.01A {Yersinia pestis} SCOP: d.177.1.1 PDB: 1nr9_A Back     alignment and structure
>2q18_X 2-keto-3-deoxy-D-arabinonate dehydratase; FAH-family fold, lyase; 2.10A {Sulfolobus solfataricus} PDB: 2q19_X 2q1a_X 2q1c_X 2q1d_X 3bqb_A Back     alignment and structure
>1saw_A Hypothetical protein FLJ36880; structural genomics, fumarylacetoacetatehydrolase family, unknown function; 2.20A {Homo sapiens} SCOP: d.177.1.1 Back     alignment and structure
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Back     alignment and structure
>1nkq_A Hypothetical 28.8 kDa protein in PSD1-SKO1 intergenic region; dimer, PSI, protein structure initiative; 2.20A {Saccharomyces cerevisiae} SCOP: d.177.1.1 Back     alignment and structure
>1gtt_A 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase; lyase, bifunctional enzyme, multifunctional enzyme decarboxylase; 1.7A {Escherichia coli} SCOP: d.177.1.1 d.177.1.1 PDB: 1i7o_A Back     alignment and structure
>2eb4_A 2-OXO-HEPT-3-ENE-1,7-dioate hydratase; lyase; 1.60A {Escherichia coli} PDB: 2eb5_A 2eb6_A Back     alignment and structure
>2wqt_A 2-keto-4-pentenoate hydratase; lyase, dodecahedral form, aromatic hydrocarbons catabolism; 2.80A {Escherichia coli} PDB: 1sv6_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 420
d1hyoa2298 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolas 1e-115
d1hyoa1118 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, 9e-41
d1nkqa_257 d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker 3e-15
d1sawa_217 d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Hom 3e-07
d1gtta2216 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degra 1e-04
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 298 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score =  335 bits (861), Expect = e-115
 Identities = 178/295 (60%), Positives = 221/295 (74%), Gaps = 1/295 (0%)

Query: 125 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQF 184
           IGDYTDF+SS  HA N G +FRG  NA+  NW HLP+ YHGRASS+V+SGT I RP GQ 
Sbjct: 3   IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQM 62

Query: 185 APSGNSPPPFGPSQKLDFELEMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQ 244
            P  + PP +G  + LD ELEMA  VGPGN  G+PI +++A +HIFG++LMNDWSARDIQ
Sbjct: 63  RPDNSKPPVYGACRLLDMELEMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQ 122

Query: 245 AWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQDPQPLPYLAEKISKNYDISLE 304
            WEYVPLGPFLGKSFGTT+SPW+V +DAL PF   +PKQDP+PLPYL       +DI+L 
Sbjct: 123 QWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQDPKPLPYLCHSQPYTFDINLS 182

Query: 305 VQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLG 364
           V +K  G   +  + RSNFK++YWT+ QQL HH++NGCNLR GDLL +GTISG +PES G
Sbjct: 183 VSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFG 242

Query: 365 CLLELTWNGQKPLSL-DGFTRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPS 418
            +LEL+W G K + +  G TR FL DGDEV  TG C+G+GY VGFG C+GK++P+
Sbjct: 243 SMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPA 297
>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 118 Back     information, alignment and structure
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 257 Back     information, alignment and structure
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Length = 217 Back     information, alignment and structure
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Length = 216 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query420
d1hyoa2298 Fumarylacetoacetate hydrolase, FAH, C-terminal dom 100.0
d1nr9a_221 Putative isomerase YcgM {Escherichia coli [TaxId: 100.0
d1sawa_217 FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [Tax 100.0
d1gtta1213 4-hydroxyphenylacetate degradation bifunctional is 100.0
d1gtta2216 4-hydroxyphenylacetate degradation bifunctional is 100.0
d1nkqa_257 Hypothetical protein Ynl168c {Baker's yeast (Sacch 100.0
d1hyoa1118 Fumarylacetoacetate hydrolase, FAH, N-terminal dom 99.93
d1sv6a_261 2-keto-4-pentenoate hydratase MhpD {Escherichia co 99.69
>d1hyoa2 d.177.1.1 (A:119-416) Fumarylacetoacetate hydrolase, FAH, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: FAH
superfamily: FAH
family: FAH
domain: Fumarylacetoacetate hydrolase, FAH, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=1.3e-79  Score=603.05  Aligned_cols=295  Identities=60%  Similarity=1.144  Sum_probs=276.3

Q ss_pred             cCCcceEeecHHHHHHhccccCCCCCCCCCCCCCCceeeecCCceeeeCCCceeCCCCCcCCCCCCCCCCCCCCCceece
Q 014670          125 IGDYTDFFSSMHHAKNCGTIFRGPANAVPANWFHLPIAYHGRASSVVISGTDIVRPRGQFAPSGNSPPPFGPSQKLDFEL  204 (420)
Q Consensus       125 ~~~~~~~~~~~~H~~e~g~~~~~~~~~~~p~~~~~P~~f~k~~ssvv~~g~~I~~P~~~~~~~~~~~~~~~~s~~lD~E~  204 (420)
                      +++|+|||||++|++++|++|+++.++++|+|++.|++|+|++||++++|++|.+|.+++.+.....|.+.++++||||+
T Consensus         3 ~~~~~Df~~~~~Ha~~~~~~~r~~~~~lpp~~~~~Pv~f~~~~ssivg~g~~I~~P~g~~~~~~~~~p~~~~s~~lDyE~   82 (298)
T d1hyoa2           3 IGDYTDFYSSRQHATNVGIMFRGKENALLPNWLHLPVGYHGRASSIVVSGTPIRRPMGQMRPDNSKPPVYGACRLLDMEL   82 (298)
T ss_dssp             CSCEEEECCCHHHHHHHHHHHHCGGGCSCTTTTTSCCEEECCSTTEEETTCCEECCEEEECSCTTSCCEEEECSCEECBE
T ss_pred             ccccceeccHHHHHHHHHHhhcCCCCCCCcccccCCCEEcCCCCeEECCCCCEeCCCcceecCccCCCccCcccceeeec
Confidence            56899999999999999999888888899999999999999999999999999999877654444446667799999999


Q ss_pred             EEEEEEcCCCCCCCCCChhhHhhceeEEEEeeccchhhhhhhhcCCCCCccccccCCCCCCccccccccCCccCCCCCCC
Q 014670          205 EMAAVVGPGNELGKPIDVNEAADHIFGVMLMNDWSARDIQAWEYVPLGPFLGKSFGTTLSPWIVTLDALEPFACDSPKQD  284 (420)
Q Consensus       205 ELavVIGk~~~~g~~is~e~A~~~I~Gyti~ND~SaRd~Q~~~~~~lg~~~gKsfdt~iGPwivt~del~~~~~~~~~~~  284 (420)
                      ||||||||++..|++|++++|++||+||||+||||+||+|..++.+++|++||+|+|++||||||++++.++.+..+..+
T Consensus        83 EL~vVIG~~~~~g~~i~~e~A~d~I~Gyti~NDvSaRd~Q~~~~~~~~~~~gK~f~tpiGP~ivt~~~l~p~~~~~~~~d  162 (298)
T d1hyoa2          83 EMAFFVGPGNRFGEPIPISKAHEHIFGMVLMNDWSARDIQQWEYVPLGPFLGKSFGTTISPWVVPMDALMPFVVPNPKQD  162 (298)
T ss_dssp             EEEEEECSCCCTTCCCCHHHHGGGEEEEEEEECCEEHHHHHHHCTTTCCCHHHHTCEEECSCBEEHHHHGGGEECCCCCS
T ss_pred             eEEEEEecccccCccCCHHHHHHHHHHHhhhhhhhHHHHHHhhccCCCcccccCCCCCCCCeEccchhcCcccccccccC
Confidence            99999999877799999999999999999999999999999998889999999999999999999999999988878888


Q ss_pred             CCCCccccccCCceeeEEEEEEEeeCCCCCCeEEEecchhhhccCHHHHHHHHHhcCcccCCCCEEEcCCCCCCccCCCC
Q 014670          285 PQPLPYLAEKISKNYDISLEVQIKPAGKEDSCVVTRSNFKYLYWTLTQQLAHHTINGCNLRSGDLLGTGTISGPEPESLG  364 (420)
Q Consensus       285 ~~~~~~l~~~~~~~l~i~l~V~~~~~~~~NGe~~q~~~t~~m~~~~~~lIa~~~S~~~tL~pGDvI~TGTp~Gvg~~~~G  364 (420)
                      |+.++|+.+..++.++++|++++|++.+.||+++|++||++|+|+++|+|+|++|++|||+|||||+||||+|+++++.|
T Consensus       163 p~~~~~~~~~~~~~~dl~l~~~lng~~~~ng~~~q~~nt~dMif~~~e~Ia~~~S~~~tL~pGDlI~TGTP~G~~~~~~G  242 (298)
T d1hyoa2         163 PKPLPYLCHSQPYTFDINLSVSLKGEGMSQAATICRSNFKHMYWTMLQQLTHHSVNGCNLRPGDLLASGTISGSDPESFG  242 (298)
T ss_dssp             SCCCGGGCCCSCCEECCEEEEEEECTTCSSCEEEEEEETTCCSSCHHHHHHHHHTTSCCCCTTCEEECCCCCCSSGGGCC
T ss_pred             ccccccccccCCCCccceEEEEEEEEEeecCeEEecCcHHhcCCCHHHHHHHHHhCceeechhhEEEecCCCCCCCCCCC
Confidence            99999999999999999999999998888999999999999999999999997689999999999999999999999999


Q ss_pred             ceEEEEecCccccccCCC-CCccCCCCCEEEEEEEEeCCCceeeeeeeeeEEeeCC
Q 014670          365 CLLELTWNGQKPLSLDGF-TRKFLEDGDEVTFTGFCKGNGYTVGFGTCSGKIVPST  419 (420)
Q Consensus       365 ~~le~~~~G~~~~~l~~~-~~~~L~~GD~V~~~~~~~~~~~~~g~G~~~~~v~~~~  419 (420)
                      |.+|++++|++++++..+ +++|||+||+|+||++|+.+|.+||||+|+|+|+||.
T Consensus       243 d~le~~~~G~~~i~~~~g~~~~~L~~GD~V~ie~~~~~~g~~igfG~~~~~v~pa~  298 (298)
T d1hyoa2         243 SMLELSWKGTKAIDVGQGQTRTFLLDGDEVIITGHCQGDGYRVGFGQCAGKVLPAL  298 (298)
T ss_dssp             BHHHHTTTTTSCEECSTTCEESSCCTTCEEEEEEEEECSSCEEEEEEEEEEEECCC
T ss_pred             cEEEEEecccceeecCCCCCcccCCCCCEEEEEEEEcCCCceEeccceEEEEecCC
Confidence            999999999999999888 6789999999999999999999999999999999984
>d1nr9a_ d.177.1.1 (A:) Putative isomerase YcgM {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1sawa_ d.177.1.1 (A:) FAHD1 (Flj36880, YISKL) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gtta1 d.177.1.1 (A:1-213) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtta2 d.177.1.1 (A:214-429) 4-hydroxyphenylacetate degradation bifunctional isomerase/decarboxylase HpcE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nkqa_ d.177.1.1 (A:) Hypothetical protein Ynl168c {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1sv6a_ d.177.1.1 (A:) 2-keto-4-pentenoate hydratase MhpD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure