Citrus Sinensis ID: 014689

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Protein Sequence
MAESQRTDIEAVLSSLPQPQLSDPCPTEAQAQAQAPAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEPVVLPIPFVPPVLGQHSEGGSSSTNKRRKNKRKANKKLRTDAQPCVSAQPLTQVPPCSVAQ
Secondary Structure (PSIPRED)
cccHHHccHHHHHcccccccccccccccHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccEEEEEcccccccccEEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccEEEEEcccccccEEEEEEEccEEEcccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHcccHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccHHHHHcccccccccccccccccccccccccccHHHHccccccccccHHcccccccccccccccHHHHHHHHHHHHHccccccEEEEEccccccccEEEEEEEEccEEcccccccccHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHccccccEEEEccccccccEEEEEEEEccEEEcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccHcccccHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccccccc
Coil and Loop (DISEMBL)
MAESQRTDIEAVLsslpqpqlsdpcpteaqaqaqapapapvqarvqapatasasksvtapvvltpnrvpehlmhKNRLQehaqrsgiplpvyqshnegfqhapkfrasvsvdgvtytspntfshrKAAEQDVAKIALECISKKikdegcplinqdTVFCKSILNEFAVKMNlelpaystrqseaLLPVFVSSLVFngvtytgepgrskKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKvkesnystqkiatsyvpttaipksssgihpipttpeasvgmhsiptipeatagihptpaiteastgmhptsaaievstgmhstaadsetstgmnlpchpfkkpkleppsepvvlpipfvppvlgqhseggssstnkrRKNKRKANKKlrtdaqpcvsaqpltqvppcsvaq
Flexible Loop (DISEMBL)
MAESQRTDIEAVLSSLPQPQLSDPCPTEAQAQAQAPAPAPVQARVQAPAtasasksvtapvvLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSpntfshrkaaEQDVAKIALECISKKikdegcpliNQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTytgepgrskkEAEQLAARAVIRTLlvtsgsatilSEIIKSKGKLYAALNKvkesnystqkIATSYVPTtaipksssgihPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEPVVLPIPFVPPvlgqhseggssstnkrrknkrkankklrtdaqpcvsaqpltqvppcsvaq
Low Complexity Region (SEG)
MAESQRTDIEAVLSSLPQPQLSDPCpteaqaqaqapapapvqarvqapataSASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEpvvlpipfvppvlGQHSEGGSSSTnkrrknkrkankkLRTDAQPCVSAQPLTQVPPCSVAQ
Disordered region (IsUnstruct)
**********************************************************************************************************ASVSVDGVTYTS***F****AAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTG***********LAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYV***********************************************************************************************************************************************************
Disordered Region (DISOPRED)
*****************************************************************NRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYT***********EQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGV*************EQLAARAVIRT**********************************************************************************************************************************************IPFV****************************************************
Disordered Region (DISEMBL)
**********AVLSSLPQP*************************************VTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVST*************GMNLPCHPFKKPKLEPPSEPVVLPIPFVPPVLG***************************AQPCVSAQPLTQVPPCSVAQ
Disordered Region (DISPRO)
*****************************************************************NRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK****GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT***************************************************************************************************************TSTGMNLPCHPFKKPKLEPPSEPVVLPIPFVPPVL***************************DAQPCVSAQPLTQ********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAESQRTDIEAVLSSLPQPQLSDPCPTEAQAQAQAPAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPTPAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEPVVLPIPFVPPVLGQHSEGGSSSTNKRRKNKRKANKKLRTDAQPCVSAQPLTQVPPCSVAQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	420	2.2.26 [Sep-21-2011]
Q6YW64	312	Double-stranded RNA-bindi	yes	no	0.442	0.596	0.400	2e-30
Q0IV63	473	Double-stranded RNA-bindi	no	no	0.416	0.369	0.376	3e-24
Q0IQN6	424	Double-stranded RNA-bindi	no	no	0.416	0.412	0.376	6e-24
Q0DJA3	437	Double-stranded RNA-bindi	no	no	0.471	0.453	0.352	9e-24
O04492	419	Double-stranded RNA-bindi	yes	no	0.347	0.348	0.392	7e-22
Q0DKP4	593	Double-stranded RNA-bindi	no	no	0.359	0.254	0.392	7e-21
Q9SKN2	434	Double-stranded RNA-bindi	no	no	0.359	0.347	0.379	5e-20
Q8GY79	393	Double-stranded RNA-bindi	no	no	0.357	0.381	0.370	9e-19
Q9LJF5	359	Double-stranded RNA-bindi	no	no	0.357	0.417	0.370	3e-18
B7E321	404	Double-stranded RNA-bindi	no	no	0.357	0.371	0.363	7e-18

>sp|Q6YW64|DRB4_ORYSJ Double-stranded RNA-binding protein 4 OS=Oryza sativa subsp. japonica GN=DRB4 PE=2 SV=1

 Score =  134 bits (336), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 81/202 (40%), Positives = 126/202 (62%), Gaps = 16/202 (7%)

Query: 71  HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR--KAA 128
           H  +K++LQE+ Q++   LP+Y +  +G  H  KF+++V VDG  ++S  TF HR  K A
Sbjct: 36  HCNYKSKLQEYLQQANKQLPIYCTKCKGEHHQLKFKSTVMVDGEEFSS--TFCHRRVKDA 93

Query: 129 EQDVAKIALECISKKIKDEG-----CPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE 183
           EQD AK+A + + ++ + E        LI+QD VF KSIL+E+  K   + P YS  ++E
Sbjct: 94  EQDAAKVAYDTLLERKETETDDTDVFELIDQDVVFSKSILHEYTTKTKTDQPEYSVTKTE 153

Query: 184 ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKL 243
             +  +VSS+ F G TYTG   R+KK+AEQ AARA +++LL T  + T +++I++SK KL
Sbjct: 154 GSVTPYVSSVSFAGHTYTGGAARNKKDAEQKAARAAVKSLLAT--NYTSMAKIVRSKEKL 211

Query: 244 YAAL-----NKVKESNYSTQKI 260
             A+     NK  +SN + +K+
Sbjct: 212 IRAISPSGYNKGIDSNPTNKKL 233

Binds double-stranded RNA.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0IV63|DRB7_ORYSJ Double-stranded RNA-binding protein 7 OS=Oryza sativa subsp. japonica GN=DRB7 PE=2 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 103/178 (57%), Gaps = 3/178 (1%)

Query: 67  RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
           RV    + K+RLQE+AQ++G+  P Y +  EG  H P F+++V ++  +Y S   F +RK
Sbjct: 27  RVENCYVFKSRLQEYAQKAGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRK 86

Query: 127 AAEQDVAKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL 185
           AAEQ  A++AL  I K I  +   P + Q+T  CK++L E+A KMN  +P+Y   +S + 
Sbjct: 87  AAEQSAAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASG 145

Query: 186 LPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 242
           L  F+ ++   G+ Y G   R+KK+AE  AAR  +  +   S GSA   ++ I   GK
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0IQN6|DRB8_ORYSJ Double-stranded RNA-binding protein 8 OS=Oryza sativa subsp. japonica GN=DRB8 PE=2 SV=1

 Score =  112 bits (280), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 67/178 (37%), Positives = 103/178 (57%), Gaps = 3/178 (1%)

Query: 67  RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
           RV    + K+RLQE+AQ++G+  P Y +  EG  H P F+++V ++  +Y S   F +RK
Sbjct: 27  RVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRK 86

Query: 127 AAEQDVAKIALECISKKI-KDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL 185
           AAEQ  A++AL  I K I  +   P + Q+T  CK++L E+A KMN  +P+Y   +S + 
Sbjct: 87  AAEQSAAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASG 145

Query: 186 LPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 242
           L  F+ ++   G+ Y G   R+KK+AE  AAR  +  +   S GSA   ++ I   GK
Sbjct: 146 LAPFICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0DJA3|DRB3_ORYSJ Double-stranded RNA-binding protein 3 OS=Oryza sativa subsp. japonica GN=DRB3 PE=2 SV=1

 Score =  111 bits (278), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 74/210 (35%), Positives = 114/210 (54%), Gaps = 12/210 (5%)

Query: 35  APAPAPVQARVQAPATASASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQS 94
           AP P P +    +PA   A+  +         RV    + K+RLQE+AQ++G+  P Y +
Sbjct: 6   APTPLPPETANTSPAPIGATAGI---------RVENCYVFKSRLQEYAQKAGLQTPEYHT 56

Query: 95  HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI-KDEGCPLIN 153
             EG  H P F+++V ++  +Y S   FS+RKAAEQ  A++AL  I K I  +   P + 
Sbjct: 57  SKEGPSHEPVFKSTVVINNTSYGSLPGFSNRKAAEQSAAEVALMEIVKSIPANANIPAV- 115

Query: 154 QDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQ 213
           Q+T  CK++L E+A KMN  +P+Y   +  + L  F+ ++   G+ Y G   R+KK+AE 
Sbjct: 116 QETGLCKNLLQEYAQKMNYAIPSYICTKPASGLAPFLCTVEIGGIQYIGAAARTKKDAEI 175

Query: 214 LAARAVIRTLLVTS-GSATILSEIIKSKGK 242
            AAR  +  +   S GSA   ++ I   GK
Sbjct: 176 KAARTALLAIQGQSEGSANGATKYIVVPGK 205

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04492|DRB1_ARATH Double-stranded RNA-binding protein 1 OS=Arabidopsis thaliana GN=DRB1 PE=1 SV=1

 Score =  105 bits (262), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 91/153 (59%), Gaps = 7/153 (4%)

Query: 73  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           + K+RLQE+AQ+  +P PVY+   EG  H   F+++V +DGV Y S   F +RKAAEQ  
Sbjct: 15  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 74

Query: 133 AKIALECISKKIKDEGCPLINQ---DTVFCKSILNEFAVKMNLELPAYSTRQSEALLPV- 188
           A++AL  ++K  +   C  ++Q   +T  CK++L E+A KMN  +P Y  ++ E L  V 
Sbjct: 75  AEVALRELAKSSELSQC--VSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVT 132

Query: 189 -FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
            F  ++   G+ YTG   R+KK+AE  A R  +
Sbjct: 133 QFTCTVEIGGIKYTGAATRTKKDAEISAGRTAL 165

Double-stranded RNA-binding protein involved in RNA-mediated post-transcriptional gene silencing (PTGS). Functions in the microRNAs (miRNAs) biogenesis by assisting DICER-LIKE 1 (DCL1) in the accurate processing from primary miRNAs (pri-miRNAs) to miRNAs in the nucleus. Forms a complex with SERRATE (SE) and DCL1 to promote accurate processing of pri-miRNAs by DCL1. Binds and assist DCL1 for accurate processing of precursor miRNAs (pre-miRNA). Indirectly involved in the production of trans-acting small interfering RNAs (ta-siRNAs) derived from the TAS1, TAS2 or TAS3 endogenous transcripts by participating in the production of their initiating miRNAs. Involved with argonaute 1 (AGO1) in the guide strand selection from miRNA duplexes, presumably by directional loading of the miRNA duplex (guide stand and passenger strand) onto the RNA-induced silencing complex (RISC) for passenger strand degradation. Does not participate in sense transgene-induced post-transcriptional gene silencing (S-PTGS). Involved in several plant development aspects and response to hormones through its role in miRNAs processing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0DKP4|DRB2_ORYSJ Double-stranded RNA-binding protein 2 OS=Oryza sativa subsp. japonica GN=DRB2 PE=2 SV=1

 Score =  102 bits (253), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 60/153 (39%), Positives = 89/153 (58%), Gaps = 2/153 (1%)

Query: 73  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           M+KN+LQE AQRS   LP Y    EG  HAP+F+A+V+ +G T+ SP   S  + AE   
Sbjct: 1   MYKNQLQELAQRSCFNLPSYACIREGPDHAPRFKATVNFNGETFESPAFCSTLRLAEHAA 60

Query: 133 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
           A++AL  +SK+         +  +T   K++L E A +  L+LP Y+T R      PVF 
Sbjct: 61  AEVALNELSKRGPSSSLAAKVLDETGIYKNLLQETAHRAGLKLPVYTTIRSGPGHTPVFT 120

Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
            ++   G+T+TG PG++KK+A++ AA A    L
Sbjct: 121 CTVELAGMTFTGNPGKTKKQAQKNAAMAAWSEL 153

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SKN2|DRB2_ARATH Double-stranded RNA-binding protein 2 OS=Arabidopsis thaliana GN=DRB2 PE=1 SV=1

 Score = 99.4 bits (246), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 58/153 (37%), Positives = 87/153 (56%), Gaps = 2/153 (1%)

Query: 73  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           M+KN+LQE AQRS   LP Y    EG  HAP+F+A+V+ +G  + SP   S  + AE   
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query: 133 AKIALECISKKIKDEG-CPLINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
           A++AL  +S +         I  +T   K++L E A ++   LP Y+T R      PVF 
Sbjct: 61  AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
            ++   G+T+TG+P ++KK+AE+ AA A   +L
Sbjct: 121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSL 153

Binds double-stranded RNA. May be involved in RNA-mediated silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GY79|DRB5_ARATH Double-stranded RNA-binding protein 5 OS=Arabidopsis thaliana GN=DRB5 PE=1 SV=1

 Score = 95.1 bits (235), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 90/154 (58%), Gaps = 4/154 (2%)

Query: 73  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           M+KN+LQE AQRS   LP Y    EG  HAP+F+ASV+ +G  + SP   S  + AE   
Sbjct: 1   MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query: 133 AKIALECISKKI--KDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 189
           A+++L  +S ++  K     ++++  ++ K++L E A +  L+LP Y S R      P F
Sbjct: 61  AEVSLNVLSSRVPSKSLTAKILDETGIY-KNLLQETAHRAGLDLPMYTSVRSGSCHFPGF 119

Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
             ++   G+T+TGE  ++KK+AE+ AA A   +L
Sbjct: 120 SCTVELAGMTFTGESAKTKKQAEKNAAIAAWSSL 153

Binds double-stranded RNA. May be involved in RNA-mediated silencing.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LJF5|DRB3_ARATH Double-stranded RNA-binding protein 3 OS=Arabidopsis thaliana GN=DRB3 PE=2 SV=1

 Score = 93.6 bits (231), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 89/154 (57%), Gaps = 4/154 (2%)

Query: 73  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           M+KN+LQE AQRS   LP Y    EG  HAP+F+ASV+ +G  + SP   S  + AE   
Sbjct: 1   MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query: 133 AKIALECISKK--IKDEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVF 189
           A++AL  +S K   K     ++++  ++ K++L E A +  L+LP Y S R     +P F
Sbjct: 61  AEVALSALSSKGPSKSLTARVLDETGIY-KNLLQETAHRAGLDLPVYTSVRSGPGHIPTF 119

Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
             ++   G+++ GE  ++KK+AE+ AA A   +L
Sbjct: 120 SCTVELAGMSFNGESAKTKKQAEKNAAIAAWFSL 153

Binds double-stranded RNA.

Arabidopsis thaliana (taxid: 3702)

>sp|B7E321|DRB5_ORYSJ Double-stranded RNA-binding protein 5 OS=Oryza sativa subsp. japonica GN=DRB5 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 56/154 (36%), Positives = 91/154 (59%), Gaps = 4/154 (2%)

Query: 73  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           M+KN+LQE AQRS   LP Y    EG  HAP+F+A+V+ +G T+  P+  +  + AE   
Sbjct: 1   MYKNQLQELAQRSCFSLPSYVCTREGPDHAPRFKATVTFNGETFDGPSNCTTLRQAEHAA 60

Query: 133 AKIALECISKKIKDEGCP--LINQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVF 189
           A++AL  +S +         ++++  V+ K++L E A +  L+LP Y+T R      PVF
Sbjct: 61  AEVALARLSLRGPSSSLTARVLDETGVY-KNLLQETAHRAGLKLPVYTTVRSGPGHSPVF 119

Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
            S++   G+++ G+P ++KK AE+ AA A   +L
Sbjct: 120 SSTVELAGMSFAGDPAKTKKHAEKNAAMAAWSSL 153

Binds double-stranded RNA.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
359488195	333	PREDICTED: double-stranded RNA-binding p	0.745	0.939	0.559	4e-89
224069354	452	predicted protein [Populus trichocarpa]	0.566	0.526	0.560	4e-70
255583419	289	double-stranded RNA binding protein, put	0.664	0.965	0.464	9e-61
356551805	434	PREDICTED: uncharacterized protein LOC10	0.416	0.403	0.542	1e-49
449464150	385	PREDICTED: uncharacterized protein LOC10	0.440	0.480	0.494	4e-45
449502333	385	PREDICTED: uncharacterized LOC101213863	0.440	0.480	0.494	4e-45
357492171	357	hypothetical protein MTR_5g079490 [Medic	0.409	0.481	0.465	2e-40
242081359	298	hypothetical protein SORBIDRAFT_07g01938	0.419	0.590	0.469	3e-36
357141254	281	PREDICTED: double-stranded RNA-binding p	0.409	0.612	0.472	4e-35
212276238	323	uncharacterized protein LOC100191297 [Ze	0.430	0.560	0.420	1e-30

>gi|359488195|ref|XP_002272597.2| PREDICTED: double-stranded RNA-binding protein 4-like [Vitis vinifera] gi|296087161|emb|CBI33535.3| unnamed protein product [Vitis vinifera]

 Score =  334 bits (857), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 201/359 (55%), Positives = 238/359 (66%), Gaps = 46/359 (12%)

Query: 67  RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
           R+PEHLMHKNRLQE+ QRS IPLP+YQ+ NEGFQHAPKFR++V VDG TYTSPNTFSHRK
Sbjct: 16  RLPEHLMHKNRLQEYTQRSAIPLPIYQTVNEGFQHAPKFRSTVLVDGATYTSPNTFSHRK 75

Query: 127 AAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALL 186
           AAEQDVA++ALE ISKKIKDEGCPLI +DTVFCKSILNEFAVKMNLE P Y+T Q E LL
Sbjct: 76  AAEQDVARLALEFISKKIKDEGCPLIREDTVFCKSILNEFAVKMNLEKPTYTTVQPEGLL 135

Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAA 246
           PVFVSSLVFNGVTYTG+ GR+KKEAEQLAAR VI ++L  SGS T+LSEIIKSK KLYAA
Sbjct: 136 PVFVSSLVFNGVTYTGDAGRNKKEAEQLAARTVILSILGNSGSGTLLSEIIKSKVKLYAA 195

Query: 247 LNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPT 306
           L++VK+ +Y                   +GI PI        G+         T+GI P 
Sbjct: 196 LHRVKDPSY-----------------IHTGILPI--------GL---------TSGIPPC 221

Query: 307 PA----ITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEPVV 362
                 +   +  + PT+ ++ +S  +               P H  +KPK    SE + 
Sbjct: 222 KGKEVEVAPGTDQLLPTAVSVPLSGQLVHVPVTHP-------PVHELEKPKPNVSSEVIA 274

Query: 363 LPIPFVPPVLGQ-HSEGGSSSTNKRRKNKRKANKKLRTDAQPCVSAQPLTQVPPCSVAQ 420
            PI FVP V  Q      ++   + RKNK+KANKKLRTDAQ  V+  PL Q  PCSVAQ
Sbjct: 275 PPISFVPSVFEQPLVVSPTTGRKRNRKNKKKANKKLRTDAQLPVAVLPLNQASPCSVAQ 333

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069354|ref|XP_002302963.1| predicted protein [Populus trichocarpa] gi|222844689|gb|EEE82236.1| predicted protein [Populus trichocarpa]

 Score =  271 bits (694), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 138/246 (56%), Positives = 179/246 (72%), Gaps = 8/246 (3%)

Query: 23  DPCPTEAQAQAQAPAPAPVQARVQAPATASASKSVTAPVV--------LTPNRVPEHLMH 74
           +P P+ A      P PAP      +P+ A+++ ++T+ V         L    +P++LM+
Sbjct: 81  EPTPSPAPVPDPTPNPAPAPDSTLSPSPAASTTTLTSRVSENISFSKKLVKKGLPDNLMY 140

Query: 75  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
           KNRLQE+ Q+S + LPVYQ+ NEG  H P+FR++V VDG  Y S  TF HRKAAEQDVA 
Sbjct: 141 KNRLQEYTQKSSLQLPVYQTLNEGPAHMPRFRSTVWVDGARYRSQKTFLHRKAAEQDVAN 200

Query: 135 IALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLV 194
           +ALE I K++KDEGCPL+  DTVFCKSILNEFAVK+N E P Y+T QS  LLPVF+S+LV
Sbjct: 201 LALESILKRVKDEGCPLLLGDTVFCKSILNEFAVKVNREKPTYNTVQSPGLLPVFISTLV 260

Query: 195 FNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESN 254
           F+GV+YTG+ GR+KKEAEQLAARAVI +L+  SGS+ IL EIIKSK KLYAAL++VK+ +
Sbjct: 261 FDGVSYTGDAGRNKKEAEQLAARAVILSLIGNSGSSKILYEIIKSKSKLYAALDRVKDPS 320

Query: 255 YSTQKI 260
           +S   I
Sbjct: 321 HSQPNI 326

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583419|ref|XP_002532469.1| double-stranded RNA binding protein, putative [Ricinus communis] gi|223527827|gb|EEF29925.1| double-stranded RNA binding protein, putative [Ricinus communis]

 Score =  240 bits (613), Expect = 9e-61,   Method: Compositional matrix adjust.
 Identities = 156/336 (46%), Positives = 194/336 (57%), Gaps = 57/336 (16%)

Query: 69  PEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAA 128
           PEHLM+KNRLQE+ QR  + LP+YQ+ NEG+ H PKFR++V VDG  YTS NTFSHRK A
Sbjct: 9   PEHLMYKNRLQEYTQRQSLQLPIYQTVNEGYPHDPKFRSTVLVDGEEYTSHNTFSHRKEA 68

Query: 129 EQDVAKIALECISKKIKDE--GCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALL 186
           EQDVAK+AL  I++KIKDE       ++DTV CKSILNE+AVKM LE+P Y+T +   L 
Sbjct: 69  EQDVAKLALTSITEKIKDEIKDEKFTHEDTVACKSILNEYAVKMQLEMPTYNTVKQGGLF 128

Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAA 246
           P+FVSS VFNGVTY G+ GR+KKEAEQLAARA + +LL    S  I+S+  KSK KLY  
Sbjct: 129 PIFVSSSVFNGVTYNGDIGRTKKEAEQLAARAAVLSLLRNVESGEIISKFFKSKRKLYVG 188

Query: 247 LNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPT 306
            +K       +Q    S +P             I T  EA +  + +P IPEA + +HP 
Sbjct: 189 FHKS-----DSQDAQNSNMPVVG--------KDIKT--EALMVSNVVP-IPEAASALHP- 231

Query: 307 PAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEPPSEPVVLPIP 366
                                                 P H F K K E   E + LPI 
Sbjct: 232 --------------------------------------PHHEFTKTKPEKICEGIDLPIA 253

Query: 367 FVPPVLGQHSEGGSSSTNKRRKNKRKANKKLRTDAQ 402
           FV PV GQ  +    S  KRRKNK+K NKKLR+++Q
Sbjct: 254 FVHPVSGQSVDVALESGKKRRKNKKKPNKKLRSESQ 289

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551805|ref|XP_003544264.1| PREDICTED: uncharacterized protein LOC100798730 [Glycine max]

 Score =  203 bits (516), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/177 (54%), Positives = 132/177 (74%), Gaps = 2/177 (1%)

Query: 73  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           M+KNRLQE   +SGI  PVYQ+ NEG  H+PKFR++V V  + YTS +TFSH+KAAE + 
Sbjct: 1   MYKNRLQEFTSKSGINFPVYQTINEGQDHSPKFRSTVWVADMGYTSQSTFSHKKAAEHEA 60

Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE--ALLPVFV 190
           A++ALE I K+ +DEG  L+NQ + F KSI+NE+A K+++E P Y+T Q +   +LP+F+
Sbjct: 61  ARLALESILKRTRDEGLSLVNQISPFSKSIMNEYADKLHVEQPTYNTDQQQLGGVLPIFI 120

Query: 191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAAL 247
           +SLVFNG +YTG+P R+KKEAEQ AA+A I +++  S S T+L EIIKSK   Y A+
Sbjct: 121 TSLVFNGTSYTGDPARTKKEAEQSAAKAAILSIMGDSSSGTVLVEIIKSKSIFYDAI 177

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449464150|ref|XP_004149792.1| PREDICTED: uncharacterized protein LOC101213863 [Cucumis sativus]

 Score =  188 bits (478), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/188 (49%), Positives = 129/188 (68%), Gaps = 3/188 (1%)

Query: 72  LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
            ++KN L E+ Q++ I +PVYQ+ +EG    PK+R++V VD V Y SPNTF +R+AAEQD
Sbjct: 76  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQD 135

Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVS 191
            A++A E ISKK KD+   L+ +D + CKSIL+E+  KM LE P Y+T+ ++  +  F S
Sbjct: 136 AARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQS 195

Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL---LVTSGSATILSEIIKSKGKLYAALN 248
           +LVF+GV YT + GR+KKEAEQLAARA I +L        S   L +II SK + +A L 
Sbjct: 196 TLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQ 255

Query: 249 KVKESNYS 256
           KVK+SN+S
Sbjct: 256 KVKDSNFS 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449502333|ref|XP_004161611.1| PREDICTED: uncharacterized LOC101213863 [Cucumis sativus]

 Score =  188 bits (477), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/188 (49%), Positives = 129/188 (68%), Gaps = 3/188 (1%)

Query: 72  LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
            ++KN L E+ Q++ I +PVYQ+ +EG    PK+R++V VD V Y SPNTF +R+AAEQD
Sbjct: 76  FVYKNHLHEYTQKAKIAVPVYQTIDEGSPSLPKYRSTVMVDEVHYVSPNTFRNRRAAEQD 135

Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVS 191
            A++A E ISKK KD+   L+ +D + CKSIL+E+  KM LE P Y+T+ ++  +  F S
Sbjct: 136 AARVAFEYISKKTKDDAFLLLREDLMLCKSILSEYTDKMGLERPIYTTKHNQGSVAFFQS 195

Query: 192 SLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL---LVTSGSATILSEIIKSKGKLYAALN 248
           +LVF+GV YT + GR+KKEAEQLAARA I +L        S   L +II SK + +A L 
Sbjct: 196 TLVFDGVVYTSDLGRTKKEAEQLAARAAILSLHEDATNPKSQKALGDIIASKVRFHAMLQ 255

Query: 249 KVKESNYS 256
           KVK+SN+S
Sbjct: 256 KVKDSNFS 263

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357492171|ref|XP_003616374.1| hypothetical protein MTR_5g079490 [Medicago truncatula] gi|355517709|gb|AES99332.1| hypothetical protein MTR_5g079490 [Medicago truncatula]

 Score =  173 bits (438), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 80/172 (46%), Positives = 121/172 (70%)

Query: 73  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           M KN L + A +S +  P + S NEG   AP +R+SV VDG+ +TS  TF HRKAAEQ+V
Sbjct: 27  MFKNNLIQFALKSNMKHPEFFSRNEGSIQAPAYRSSVMVDGLVFTSQLTFFHRKAAEQEV 86

Query: 133 AKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSS 192
           A+ ALE ++KK+KDE   ++++   FCK++LNE+A K++++LP Y + + + ++P FV +
Sbjct: 87  ARFALEYLTKKVKDEAYSIMSEAVTFCKTVLNEYASKLSIQLPTYKSVEYKEVIPYFVCT 146

Query: 193 LVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLY 244
           L  NG +YTG+  R KK+A +LAARA I ++L  S S  +L++IIK+K KL+
Sbjct: 147 LDLNGTSYTGDAARRKKDAVELAARAAILSILGNSNSGVLLAQIIKTKAKLF 198

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242081359|ref|XP_002445448.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor] gi|241941798|gb|EES14943.1| hypothetical protein SORBIDRAFT_07g019380 [Sorghum bicolor]

 Score =  159 bits (402), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 85/181 (46%), Positives = 115/181 (63%), Gaps = 5/181 (2%)

Query: 70  EHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAE 129
           +  MHKNRLQ  A+R+    PVY+  +EG  H PKFR +V V G  ++S  +F  +K AE
Sbjct: 44  DKYMHKNRLQSFAERTYKKPPVYKVESEGASHQPKFRCTVEVGGQQFSSAGSFDRKKEAE 103

Query: 130 QDVAKIALECISKKIKD---EGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALL 186
           QD A+IA E +S   +D   E   LI+QD VFCKSILNEFAVK     P+YS    E  L
Sbjct: 104 QDAARIAYEILSAVGEDDIKEAFGLIDQDAVFCKSILNEFAVKTKTTWPSYSLVYIEKPL 163

Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAA 246
            +F + +VF+G +YTGE  R+KK+AEQ AARAVI+++L      T +  I++SK +L  A
Sbjct: 164 TLFAAIVVFDGNSYTGESARNKKDAEQNAARAVIKSILAKHN--TCMVGIVRSKKQLITA 221

Query: 247 L 247
           +
Sbjct: 222 V 222

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357141254|ref|XP_003572154.1| PREDICTED: double-stranded RNA-binding protein 4-like [Brachypodium distachyon]

 Score =  155 bits (392), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 86/182 (47%), Positives = 114/182 (62%), Gaps = 10/182 (5%)

Query: 74  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
           +KNRLQE AQR+   LPVY +  +G  H P+FR++V V G  ++S  T    K AEQD A
Sbjct: 30  YKNRLQELAQRAHQKLPVYLTEKKGDHHQPEFRSTVEVWGDQFSSARTHGRIKDAEQDAA 89

Query: 134 KIALECISKKIKDEGCP------LINQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLP 187
           ++A E +  KI D          LI+QD +FCKSILNEFAVK     P YS  + + + P
Sbjct: 90  RVAYEILVAKIMDADADVTDILGLIDQDVLFCKSILNEFAVKTKATQPKYSVDRPQGVSP 149

Query: 188 V--FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYA 245
           +  FVSS+VF+G TYTGE   SKK+AEQ AARA ++++L T    T + +IIKSK  L  
Sbjct: 150 ISLFVSSVVFDGKTYTGEAAVSKKDAEQKAARAAVKSILATKN--TCMMQIIKSKENLIT 207

Query: 246 AL 247
           A+
Sbjct: 208 AI 209

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212276238|ref|NP_001130203.1| uncharacterized protein LOC100191297 [Zea mays] gi|194688536|gb|ACF78352.1| unknown [Zea mays] gi|414870581|tpg|DAA49138.1| TPA: hypothetical protein ZEAMMB73_523306 [Zea mays]

 Score =  140 bits (353), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 79/188 (42%), Positives = 113/188 (60%), Gaps = 7/188 (3%)

Query: 65  PNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSH 124
           P+ +P+  MHKNRLQ  A+R+    P+Y+  +EG  H PKF  +V V    ++S  +FS 
Sbjct: 50  PSAIPDKYMHKNRLQSFAERTYKKTPIYKVESEGQSHQPKFTCTVEVGDQQFSSTGSFSR 109

Query: 125 RKAAEQDVAKIALEC---ISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQ 181
           +K AEQD A++A E    +S+    E   LI+QD VFCKSIL EFAVK    LP+YS   
Sbjct: 110 KKEAEQDAARVAYEILTTVSESDVKEAFELIDQDAVFCKSILIEFAVKTKTTLPSYSVVC 169

Query: 182 S--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKS 239
              +  L +F + +VF+G  Y GE   +KK+AEQ AAR VI+++L      T +  I++S
Sbjct: 170 VCLKKPLTLFAAIVVFDGNAYHGESAPNKKDAEQNAARVVIKSILAKHD--TCMVRIVRS 227

Query: 240 KGKLYAAL 247
           K +L  A+
Sbjct: 228 KKQLITAV 235

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	420
UNIPROTKB|Q0IQN6	424	DRB8 "Double-stranded RNA-bind	0.414	0.410	0.379	5e-28
TAIR|locus:2024407	419	HYL1 "HYPONASTIC LEAVES 1" [Ar	0.342	0.343	0.397	1.3e-20
TAIR|locus:2057491	434	DRB2 "dsRNA-binding protein 2"	0.638	0.617	0.300	1.4e-19
TAIR|locus:2829928	359	DRB3 "dsRNA-binding protein 3"	0.347	0.406	0.378	2.7e-19
TAIR|locus:2163016	393	DRB5 "dsRNA-binding protein 5"	0.359	0.384	0.379	1.7e-18
TAIR|locus:2081620	355	DRB4 "double-stranded-RNA-bind	0.580	0.687	0.278	1.3e-15
CGD|CAL0004775	1409	MSB2 [Candida albicans (taxid:	0.297	0.088	0.320	0.00051
UNIPROTKB|Q5ALT5	1409	MSB2 "Potential cell surface f	0.297	0.088	0.320	0.00051

UNIPROTKB|Q0IQN6 DRB8 "Double-stranded RNA-binding protein 8" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 285 (105.4 bits), Expect = 5.0e-28, Sum P(2) = 5.0e-28
 Identities = 68/179 (37%), Positives = 104/179 (58%)

Query:    67 RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRK 126
             RV    + K+RLQE+AQ++G+  P Y +  EG  H P F+++V ++  +Y S   F +RK
Sbjct:    27 RVENCYVFKSRLQEYAQKTGLQTPEYHTFKEGPSHEPVFKSTVVINNTSYDSLPGFFNRK 86

Query:   127 AAEQDVAKIALECISKKIK-DEGCPLINQDTVFCKSILNEFAVKMNLELPAY-STRQSEA 184
             AAEQ  A++AL  I K I  +   P + Q+T  CK++L E+A KMN  +P+Y  T+ +  
Sbjct:    87 AAEQSAAEVALMEIVKSIPANANIPAV-QETGLCKNLLQEYAQKMNYAIPSYICTKSASG 145

Query:   185 LLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS-GSATILSEIIKSKGK 242
             L P F+ ++   G+ Y G   R+KK+AE  AAR  +  +   S GSA   ++ I   GK
Sbjct:   146 LAP-FICTVEIGGIQYIGAAARTKKDAEIKAARTALLAIQGQSEGSANGATKYIVVPGK 203

GO:0003725 "double-stranded RNA binding" evidence=IDA

TAIR|locus:2024407 HYL1 "HYPONASTIC LEAVES 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 258 (95.9 bits), Expect = 1.3e-20, P = 1.3e-20
 Identities = 60/151 (39%), Positives = 90/151 (59%)

Query:    75 KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
             K+RLQE+AQ+  +P PVY+   EG  H   F+++V +DGV Y S   F +RKAAEQ  A+
Sbjct:    17 KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 76

Query:   135 IALECISKKIKDEGCPLINQ---DTVFCKSILNEFAVKMNLELPAYSTRQSEALLPV--F 189
             +AL  ++K  +   C  ++Q   +T  CK++L E+A KMN  +P Y  ++ E L  V  F
Sbjct:    77 VALRELAKSSELSQC--VSQPVHETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQF 134

Query:   190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
               ++   G+ YTG   R+KK+AE  A R  +
Sbjct:   135 TCTVEIGGIKYTGAATRTKKDAEISAGRTAL 165

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005634 "nucleus" evidence=IDA

GO:0009733 "response to auxin stimulus" evidence=IMP

GO:0009735 "response to cytokinin stimulus" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0005515 "protein binding" evidence=IPI

GO:0035279 "mRNA cleavage involved in gene silencing by miRNA" evidence=IMP

GO:0031054 "pre-miRNA processing" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0015030 "Cajal body" evidence=IDA

GO:0035198 "miRNA binding" evidence=IDA

GO:0010445 "nuclear dicing body" evidence=IDA

GO:0051607 "defense response to virus" evidence=RCA

GO:0010305 "leaf vascular tissue pattern formation" evidence=IMP

GO:0010589 "leaf proximal/distal pattern formation" evidence=IMP

TAIR|locus:2057491 DRB2 "dsRNA-binding protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 251 (93.4 bits), Expect = 1.4e-19, P = 1.4e-19
 Identities = 88/293 (30%), Positives = 138/293 (47%)

Query:    73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
             M+KN+LQE AQRS   LP Y    EG  HAP+F+A+V+ +G  + SP   S  + AE   
Sbjct:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKATVNFNGEIFESPQYCSTLRQAEHSA 60

Query:   133 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAYST-RQSEALLPVFV 190
             A++AL  +S +         I  +T   K++L E A ++   LP Y+T R      PVF 
Sbjct:    61 AEVALNALSNRGPSHSLAARILDETGVYKNLLQEIAQRVGAPLPRYTTFRSGLGHQPVFT 120

Query:   191 SSLVFNGVTYTGEPGRSKKEAEQLAARAV---IRTLLVTSGSATILSEIIKSKGKLYAA- 246
              ++   G+T+TG+P ++KK+AE+ AA A    ++ L   + S+    E I    ++  A 
Sbjct:   121 GTVELAGITFTGDPAKNKKQAEKNAAMAAWSSLKQLAKETSSSMPEPENIDELEQVIIAR 180

Query:   247 --LN-KVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGI 303
               +N ++KE N  T   +++ VP     K     +  PT+P+ S         P  T+ I
Sbjct:   181 ALINYRIKE-NIGTGSSSSAPVP---FAKKFFMQNLRPTSPQPS---------PATTSRI 227

Query:   304 HPTPAITEASTGMHPTSAAIEVSTGMHSTAADSETSTGMNLPCHPFKKPKLEP 356
              P     + S     + AA   ++G+    A +  S     P   F  P   P
Sbjct:   228 LPFICPKQPSRSSRSSLAA---TSGIDRIMAAALESRSYQRPQQRFANPPYVP 277

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005737 "cytoplasm" evidence=IDA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0070919 "production of siRNA involved in chromatin silencing by small RNA" evidence=IMP

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2829928 DRB3 "dsRNA-binding protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 2.7e-19, Sum P(2) = 2.7e-19
 Identities = 56/148 (37%), Positives = 84/148 (56%)

Query:    73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
             M+KN+LQE AQRS   LP Y    EG  HAP+F+ASV+ +G  + SP   S  + AE   
Sbjct:     1 MYKNQLQELAQRSCFSLPSYTCTREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHSA 60

Query:   133 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVFV 190
             A++AL  +S K   +     +  +T   K++L E A +  L+LP Y S R     +P F 
Sbjct:    61 AEVALSALSSKGPSKSLTARVLDETGIYKNLLQETAHRAGLDLPVYTSVRSGPGHIPTFS 120

Query:   191 SSLVFNGVTYTGEPGRSKKEAEQLAARA 218
              ++   G+++ GE  ++KK+AE+ AA A
Sbjct:   121 CTVELAGMSFNGESAKTKKQAEKNAAIA 148

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2163016 DRB5 "dsRNA-binding protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 58/153 (37%), Positives = 87/153 (56%)

Query:    73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
             M+KN+LQE AQRS   LP Y    EG  HAP+F+ASV+ +G  + SP   S  + AE   
Sbjct:     1 MYKNQLQELAQRSCFNLPSYTCIREGPDHAPRFKASVNFNGEIFESPTYCSTLRQAEHAA 60

Query:   133 AKIALECISKKIKDEGCPL-INQDTVFCKSILNEFAVKMNLELPAY-STRQSEALLPVFV 190
             A+++L  +S ++  +     I  +T   K++L E A +  L+LP Y S R      P F 
Sbjct:    61 AEVSLNVLSSRVPSKSLTAKILDETGIYKNLLQETAHRAGLDLPMYTSVRSGSCHFPGFS 120

Query:   191 SSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
              ++   G+T+TGE  ++KK+AE+ AA A   +L
Sbjct:   121 CTVELAGMTFTGESAKTKKQAEKNAAIAAWSSL 153

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051607 "defense response to virus" evidence=RCA

TAIR|locus:2081620 DRB4 "double-stranded-RNA-binding protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 216 (81.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 74/266 (27%), Positives = 127/266 (47%)

Query:    70 EHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAE 129
             +H+ +K +LQ +A +  + LPVY +  EG  HAP+FR +V+  G T+ S   F   K+AE
Sbjct:     2 DHV-YKGQLQAYALQHNLELPVYANEREGPPHAPRFRCNVTFCGQTFQSSEFFPTLKSAE 60

Query:   130 QDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPV 188
                AKIA+  ++ +   EG      D  + K++L E A K +  LP Y+T  S  +  P 
Sbjct:    61 HAAAKIAVASLTPQ-SPEGI-----DVAY-KNLLQEIAQKESSLLPFYATATSGPSHAPT 113

Query:   189 FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV----TSGSATILSEIIKSKGKLY 244
             F S++ F G  ++GE  ++KK AE  AA+    ++       +GS T+ SE  +      
Sbjct:   114 FTSTVEFAGKVFSGEEAKTKKLAEMSAAKVAFMSIKNGNSNQTGSPTLPSERQEDVNSNV 173

Query:   245 AALNKVKESNYSTQKIATSYVPTTAIPKSSS---GIHPIPTT--PEASVGMHSIPTIPEA 299
              +  +   S  S++ + T   P+  I  +      +H  P +   E +V ++     PE 
Sbjct:   174 KSSPQEIHSQPSSKVVMTPDTPSKGIKVNEDEFPDLHDAPASNAKEINVALNE----PEN 229

Query:   300 TAGIHPTPAITEASTGMHPTSAAIEV 325
                     A+T     M+  S+++ +
Sbjct:   230 PTNDGTLSALTTDGMKMNIASSSLPI 255

GO:0003723 "RNA binding" evidence=IEA

GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS;IDA

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA;IMP

GO:0060145 "viral gene silencing in virus induced gene silencing" evidence=IMP

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA;IMP

GO:0070919 "production of siRNA involved in chromatin silencing by small RNA" evidence=IMP

GO:0051607 "defense response to virus" evidence=RCA

CGD|CAL0004775 MSB2 [Candida albicans (taxid:5476)]

 Score = 123 (48.4 bits), Expect = 0.00051, P = 0.00051
 Identities = 42/131 (32%), Positives = 60/131 (45%)

Query:   211 AEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAI 270
             +EQ      + T   T   AT+ S + +S+    +A+  V ES+   Q  AT+   TTA 
Sbjct:   899 SEQSGVETALSTQPTTGTEATVTSGVSQSEQTGTSAVTGVTESSEQIQSGATTPATTTA- 957

Query:   271 PKSSSGIHPIPTTPEASVGMHSIPTIP-EATAGIHPTPAITEASTGMHPTSAAIEVSTGM 329
                 S    +    EAS    +  T   EAT G   T A +EA+T    T+AA E +T  
Sbjct:   958 ----SDATAVTNASEASAESQATTTAASEATTGSQVTTAASEAATESQATTAASEAATES 1013

Query:   330 HSTAADSETST 340
              +T A SE +T
Sbjct:  1014 QATTAASEAAT 1024

GO:0031505 "fungal-type cell wall organization" evidence=IMP

GO:0005576 "extracellular region" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=IEA

GO:0030427 "site of polarized growth" evidence=IEA

GO:0030447 "filamentous growth" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900430 "positive regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0009986 "cell surface" evidence=IDA

GO:0043410 "positive regulation of MAPK cascade" evidence=IMP

GO:1900233 "positive regulation of single-species biofilm formation on inanimate substrate" evidence=IMP

GO:0030010 "establishment of cell polarity" evidence=IEA

GO:0006972 "hyperosmotic response" evidence=IEA

GO:0001402 "signal transduction involved in filamentous growth" evidence=IEA

GO:0007232 "osmosensory signaling pathway via Sho1 osmosensor" evidence=IEA

GO:0005034 "osmosensor activity" evidence=IEA

UNIPROTKB|Q5ALT5 MSB2 "Potential cell surface flocculin" [Candida albicans SC5314 (taxid:237561)]

 Score = 123 (48.4 bits), Expect = 0.00051, P = 0.00051
 Identities = 42/131 (32%), Positives = 60/131 (45%)

Query:   211 AEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQKIATSYVPTTAI 270
             +EQ      + T   T   AT+ S + +S+    +A+  V ES+   Q  AT+   TTA 
Sbjct:   899 SEQSGVETALSTQPTTGTEATVTSGVSQSEQTGTSAVTGVTESSEQIQSGATTPATTTA- 957

Query:   271 PKSSSGIHPIPTTPEASVGMHSIPTIP-EATAGIHPTPAITEASTGMHPTSAAIEVSTGM 329
                 S    +    EAS    +  T   EAT G   T A +EA+T    T+AA E +T  
Sbjct:   958 ----SDATAVTNASEASAESQATTTAASEATTGSQVTTAASEAATESQATTAASEAATES 1013

Query:   330 HSTAADSETST 340
              +T A SE +T
Sbjct:  1014 QATTAASEAAT 1024


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.311   0.125   0.353    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      420       368   0.00085  117 3  11 23  0.47    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  584 (62 KB)
  Total size of DFA:  199 KB (2111 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  35.66u 0.19s 35.85t   Elapsed:  00:00:01
  Total cpu time:  35.67u 0.19s 35.86t   Elapsed:  00:00:01
  Start:  Sat May 11 12:33:27 2013   End:  Sat May 11 12:33:28 2013

GO:0005576 "extracellular region" evidence=IDA

GO:0009986 "cell surface" evidence=IDA

GO:0030447 "filamentous growth" evidence=IMP

GO:0031505 "fungal-type cell wall organization" evidence=IMP

GO:0043410 "positive regulation of MAPK cascade" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:1900233 "positive regulation of single-species biofilm formation on inanimate substrate" evidence=IMP

GO:1900430 "positive regulation of filamentous growth of a population of unicellular organisms" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00002298 hypothetical protein (452 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	420
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	2e-12
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	3e-12
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	1e-11
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	3e-11
cd00048	68	cd00048, DSRM, Double-stranded RNA binding motif	4e-10
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	4e-09
pfam00035	66	pfam00035, dsrm, Double-stranded RNA binding motif	9e-09
COG0571	235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	1e-08
TIGR02191	220	TIGR02191, RNaseIII, ribonuclease III, bacterial	2e-08
PRK00102	229	PRK00102, rnc, ribonuclease III; Reviewed	7e-08
smart00358	67	smart00358, DSRM, Double-stranded RNA binding moti	1e-07
COG0571	235	COG0571, Rnc, dsRNA-specific ribonuclease [Transcr	2e-06
TIGR04238	201	TIGR04238, seadorna_dsRNA, seadornavirus double-st	0.001

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 66.1 bits (162), Expect = 2e-12
 Identities = 30/66 (45%), Positives = 36/66 (54%), Gaps = 2/66 (3%)

Query: 74  HKNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           +K  LQE AQ  G PLP Y+    EG  H  +F   VSV+G  Y      S +K AEQ+ 
Sbjct: 154 YKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKS-KKEAEQNA 212

Query: 133 AKIALE 138
           AK ALE
Sbjct: 213 AKAALE 218

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 61.1 bits (149), Expect = 3e-12
 Identities = 25/66 (37%), Positives = 30/66 (45%), Gaps = 2/66 (3%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
           KS+L E A K    LP Y   + E     P F   +   G       G SKKEA+Q AA 
Sbjct: 3   KSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAE 62

Query: 218 AVIRTL 223
           A +R L
Sbjct: 63  AALRKL 68

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 22/65 (33%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSE-ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARA 218
           KS+L E   K   + P     +      P F  ++  NG  Y    G SKKEA+QLAA  
Sbjct: 2   KSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGTGTGSSKKEAKQLAAEK 61

Query: 219 VIRTL 223
            ++ L
Sbjct: 62  ALQKL 66

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 62.4 bits (153), Expect = 3e-11
 Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 2/70 (2%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
           K RLQE  Q  G+PLP Y+   E G  H  +F   V+V+G         S +K AEQ  A
Sbjct: 161 KTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSS-KKEAEQAAA 219

Query: 134 KIALECISKK 143
           K AL+ + +K
Sbjct: 220 KQALKKLKEK 229

Length = 229

>gnl|CDD|238007 cd00048, DSRM, Double-stranded RNA binding motif

 Score = 55.4 bits (134), Expect = 4e-10
 Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 2/65 (3%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
           K+ LQE AQ+ G PLP Y+   E G  HAP+F   V+V G         S +K A+Q+ A
Sbjct: 3   KSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSS-KKEAKQNAA 61

Query: 134 KIALE 138
           + AL 
Sbjct: 62  EAALR 66

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases. Length = 68

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 24/66 (36%), Positives = 31/66 (46%), Gaps = 3/66 (4%)

Query: 160 KSILNEFAVKMNLELPAYST--RQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
           KS+L E A K  L  P Y     +     P F  ++   G       G SKKEA+Q AA 
Sbjct: 2   KSLLQELAQKRKLP-PEYELVKEEGPDHAPRFTVTVKVGGKRTGEGEGSSKKEAKQRAAE 60

Query: 218 AVIRTL 223
           A +R+L
Sbjct: 61  AALRSL 66

Length = 67

>gnl|CDD|215670 pfam00035, dsrm, Double-stranded RNA binding motif

 Score = 51.2 bits (123), Expect = 9e-09
 Identities = 23/66 (34%), Positives = 35/66 (53%), Gaps = 1/66 (1%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
           K+ LQE  Q+ G   P      EG  H+P F  +V+V+G  Y +    S +K A+Q  A+
Sbjct: 2   KSLLQELCQKKGPKPPYEYVEEEGPPHSPTFTVTVTVNGKKYGTGTGSS-KKEAKQLAAE 60

Query: 135 IALECI 140
            AL+ +
Sbjct: 61  KALQKL 66

Sequences gathered for seed by HMM_iterative_training Putative motif shared by proteins that bind to dsRNA. At least some DSRM proteins seem to bind to specific RNA targets. Exemplified by Staufen, which is involved in localisation of at least five different mRNAs in the early Drosophila embryo. Also by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA. Length = 66

>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]

 Score = 54.9 bits (133), Expect = 1e-08
 Identities = 25/65 (38%), Positives = 32/65 (49%), Gaps = 2/65 (3%)

Query: 75  KNRLQEHAQRSGIPLPVY-QSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
           K RLQE  Q  G+ LP Y     EG  H  +F   V+V G    +    S +K AEQ  A
Sbjct: 164 KTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRS-KKEAEQAAA 222

Query: 134 KIALE 138
           + AL+
Sbjct: 223 EQALK 227

Length = 235

>gnl|CDD|233772 TIGR02191, RNaseIII, ribonuclease III, bacterial

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 24/67 (35%), Positives = 32/67 (47%), Gaps = 4/67 (5%)

Query: 160 KSILNEFAVKMNLELPAYST--RQSEALLPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAA 216
           K+ L E+A      LP Y     +       F   +  NG  Y  G+ G+SKKEAEQ AA
Sbjct: 155 KTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGK-GKSKKEAEQNAA 213

Query: 217 RAVIRTL 223
           +A +  L
Sbjct: 214 KAALEKL 220

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family [Transcription, RNA processing]. Length = 220

>gnl|CDD|234633 PRK00102, rnc, ribonuclease III; Reviewed

 Score = 52.4 bits (127), Expect = 7e-08
 Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAA 216
           K+ L E      L LP Y   + E  A    F   +  NG     G  G SKKEAEQ AA
Sbjct: 161 KTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGT-GSSKKEAEQAAA 219

Query: 217 RAVIRTL 223
           +  ++ L
Sbjct: 220 KQALKKL 226

Length = 229

>gnl|CDD|214634 smart00358, DSRM, Double-stranded RNA binding motif

 Score = 48.0 bits (115), Expect = 1e-07
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 75  KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
           K+ LQE AQ+  +P P Y+    EG  HAP+F  +V V G         S +K A+Q  A
Sbjct: 2   KSLLQELAQKRKLP-PEYELVKEEGPDHAPRFTVTVKVGGKRTGEGEGSS-KKEAKQRAA 59

Query: 134 KIALE 138
           + AL 
Sbjct: 60  EAALR 64

Length = 67

>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription]

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 27/97 (27%), Positives = 40/97 (41%), Gaps = 7/97 (7%)

Query: 130 QDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYST--RQSEALLP 187
           +   K  L+    ++++       +D    K+ L E      L LP Y     +  A   
Sbjct: 137 EAARKFILKLFLPRLEEIDAGDQFKDP---KTRLQELLQAQGLVLPEYRLVKEEGPAHDK 193

Query: 188 VFVSSLVFNGVTY-TGEPGRSKKEAEQLAARAVIRTL 223
            F   +   G    TG+ GRSKKEAEQ AA   ++ L
Sbjct: 194 EFTVEVAVGGKELGTGK-GRSKKEAEQAAAEQALKKL 229

Length = 235

>gnl|CDD|234517 TIGR04238, seadorna_dsRNA, seadornavirus double-stranded RNA-binding protein

 Score = 39.9 bits (93), Expect = 0.001
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSEA--LLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
             +L E AVK  LELP Y     E     P F   L  N +        SKK+AE+LAA 
Sbjct: 3   VGMLQELAVKRGLELPVYEKVGKEGPDHAPTFTIKLTANDIEVIE-AASSKKQAEKLAAA 61

Query: 218 AVIRTL 223
            +   +
Sbjct: 62  TIYEDM 67

This protein family occurs in the seadornavirus virus group, with an N-terminal domain for binding double-stranded RNA, is designated VP12 in Banna virus, VP8 in Kadipiro virus, and VP11 in Liao ning virus. Length = 201

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	420
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.93
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.59
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.56
PHA02701	183	ORF020 dsRNA-binding PKR inhibitor; Provisional	99.56
smart00358	67	DSRM Double-stranded RNA binding motif.	99.55
cd00048	68	DSRM Double-stranded RNA binding motif. Binding is	99.54
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.52
smart00358	67	DSRM Double-stranded RNA binding motif.	99.52
PHA03103	183	double-strand RNA-binding protein; Provisional	99.5
PHA03103	183	double-strand RNA-binding protein; Provisional	99.49
PF00035	67	dsrm: Double-stranded RNA binding motif; InterPro:	99.47
PRK12371	235	ribonuclease III; Reviewed	99.46
KOG3732	339	consensus Staufen and related double-stranded-RNA-	99.46
PRK12371	235	ribonuclease III; Reviewed	99.43
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	99.39
PRK14718	467	ribonuclease III; Provisional	99.37
COG0571	235	Rnc dsRNA-specific ribonuclease [Transcription]	99.34
PRK14718	467	ribonuclease III; Provisional	99.32
PRK12372	413	ribonuclease III; Reviewed	99.32
PRK12372	413	ribonuclease III; Reviewed	99.29
PRK00102	229	rnc ribonuclease III; Reviewed	99.25
PRK00102	229	rnc ribonuclease III; Reviewed	99.25
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	99.23
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	99.2
TIGR02191	220	RNaseIII ribonuclease III, bacterial. This family	99.19
PF14709	80	DND1_DSRM: double strand RNA binding domain from D	99.13
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	99.07
KOG4334	650	consensus Uncharacterized conserved protein, conta	98.97
KOG1817	533	consensus Ribonuclease [RNA processing and modific	98.12
KOG1817	533	consensus Ribonuclease [RNA processing and modific	98.04
KOG4334	650	consensus Uncharacterized conserved protein, conta	98.03
KOG2777	542	consensus tRNA-specific adenosine deaminase 1 [RNA	97.94
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	97.69
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	97.15
KOG3769	333	consensus Ribonuclease III domain proteins [Transl	96.94
KOG3792	816	consensus Transcription factor NFAT, subunit NF90	96.93
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	96.7
PF03368	90	Dicer_dimer: Dicer dimerisation domain; InterPro:	95.23
PF14954	252	LIX1: Limb expression 1	95.03
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	92.17
KOG0921	1282	consensus Dosage compensation complex, subunit MLE	90.56
PF14954	252	LIX1: Limb expression 1	90.0
KOG2334	477	consensus tRNA-dihydrouridine synthase [Translatio	86.61

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.93  E-value=1.1e-24  Score=216.70  Aligned_cols=152  Identities=26%  Similarity=0.239  Sum_probs=131.8

Q ss_pred             CChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccCCCC-
Q 014689           72 LMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGC-  149 (420)
Q Consensus        72 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~E~l-  149 (420)
                      +.+++.|||||.+.+.. |.|++.+ +||.|++.|+++|.|+... +.| .|+|||.|||.||..+|..|....+.... 
T Consensus        38 KS~IS~l~E~~~r~~~~-v~fevl~eeGp~H~~~fv~rvtvg~~~-a~G-eG~sKK~AKh~AA~~~L~~lk~l~~l~~v~  114 (339)
T KOG3732|consen   38 KSPISLLQEYGLRRGLT-PVYEVLREEGPPHMPNFVFRVTVGEIT-ATG-EGKSKKLAKHRAAEALLKELKKLPPLANVR  114 (339)
T ss_pred             CChHHHHHHHHHHhCCC-cceeeeeccCCccCCCeEEEEEEeeeE-Eec-CCCchhHHHHHHHHHHHHHHhcCCCccccc
Confidence            89999999999999984 6999999 8999999999999999654 455 59999999999999999999987754210 


Q ss_pred             -----------CC--C-------CCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecC
Q 014689          150 -----------PL--I-------NQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRS  207 (420)
Q Consensus       150 -----------p~--~-------~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~S  207 (420)
                                 +.  .       .....|++++||||||+++|..|.|+++.+  .+|.+.|++.|.|++. ...|.|.|
T Consensus       115 k~~~~~~~~~~~~~~~~q~~d~~~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~-~~~GkG~s  193 (339)
T KOG3732|consen  115 KDSLKFAKMKSSGVKKDQPGDPEYGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENF-TEEGKGPS  193 (339)
T ss_pred             cCcccccccccCCccccCCCCcccccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecce-eeecCCch
Confidence                       00  0       123569999999999999999999999988  6999999999999984 56799999


Q ss_pred             HHHHHHHHHHHHHHHHHhhc
Q 014689          208 KKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       208 KK~AKq~AA~~AL~~L~~~s  227 (420)
                      ||.||++||.+||+.|.-..
T Consensus       194 KKiAKRnAAeamLe~l~~~~  213 (339)
T KOG3732|consen  194 KKIAKRNAAEAMLESLGFVK  213 (339)
T ss_pred             HHHHHHHHHHHHHHHhccCC
Confidence            99999999999999998544

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.59  E-value=8.1e-15  Score=111.44  Aligned_cols=66  Identities=36%  Similarity=0.412  Sum_probs=60.7

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHH
Q 014689          158 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  223 (420)
Q Consensus       158 n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L  223 (420)
                      |||+.|+||||++++..|.|++...  ++|.+.|+|.|.|+|..++.|.|.|||+||+.||+.||..|
T Consensus         1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048           1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence            6899999999999998899999654  67889999999999988889999999999999999999875

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.56  E-value=7.5e-15  Score=136.66  Aligned_cols=72  Identities=21%  Similarity=0.321  Sum_probs=66.1

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      ...|||+.||||||+++..+ .|.++. +||+|.+.|+++|.|+|..++.| .|+|||+|||+||+.||+.|...
T Consensus       106 k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~~  178 (183)
T PHA02701        106 KTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATA-SGCSKKLARHAACADALTILINN  178 (183)
T ss_pred             CCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHHHhh
Confidence            45799999999999999888 898877 79999999999999999999987 59999999999999999998653

>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional

Probab=99.56  E-value=1.4e-14  Score=134.80  Aligned_cols=73  Identities=26%  Similarity=0.386  Sum_probs=67.3

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689          155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  228 (420)
Q Consensus       155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s~  228 (420)
                      ...|||+.||||||+++..+ .|.++.+  ++|.+.|+++|.|+|..++.|.|+|||+|||+||+.||..|..++.
T Consensus       106 k~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~~~  180 (183)
T PHA02701        106 KTLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILINNCG  180 (183)
T ss_pred             CCCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHhhcc
Confidence            35699999999999999988 8988765  7999999999999999999999999999999999999999987764

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.55  E-value=2.2e-14  Score=109.48  Aligned_cols=64  Identities=38%  Similarity=0.443  Sum_probs=59.4

Q ss_pred             hhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHH
Q 014689          159 CKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  223 (420)
Q Consensus       159 ~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L  223 (420)
                      ||+.|+||||++++ .|.|++...  ++|.+.|+|+|.|+|+.++.|.|.|||+||+.||+.||..|
T Consensus         1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   66 (67)
T smart00358        1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSL   66 (67)
T ss_pred             CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhc
Confidence            58999999999999 689999863  68899999999999988899999999999999999999887

>cd00048 DSRM Double-stranded RNA binding motif

Probab=99.54  E-value=2.3e-14  Score=108.92  Aligned_cols=67  Identities=40%  Similarity=0.523  Sum_probs=61.4

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHH
Q 014689           73 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI  140 (420)
Q Consensus        73 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L  140 (420)
                      |||+.|+||||++++..|.|++.. .|+.|.+.|+|.|.|+|..++.| .|+|||+||+.||+.||..|
T Consensus         1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L   68 (68)
T cd00048           1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITGEG-EGSSKKEAKQNAAEAALRKL   68 (68)
T ss_pred             ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEEEe-ecCCHHHHHHHHHHHHHHhC
Confidence            789999999999988899999966 89999999999999999777776 59999999999999999865

Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.52  E-value=4.7e-14  Score=108.22  Aligned_cols=65  Identities=34%  Similarity=0.492  Sum_probs=56.5

Q ss_pred             hhHHHHHHHHHcCCCCCcEEEeec-CCCC-CeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHH
Q 014689          159 CKSILNEFAVKMNLELPAYSTRQS-EALL-PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  223 (420)
Q Consensus       159 ~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~-~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L  223 (420)
                      ||+.|+|||+++++.++.|..... ++|. +.|.|+|.|+|..++.|.|+|||+||+.||+.||+.|
T Consensus         1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen    1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence            689999999999988754444444 4554 7999999999999999999999999999999999987

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>smart00358 DSRM Double-stranded RNA binding motif

Probab=99.52  E-value=4.5e-14  Score=107.73  Aligned_cols=65  Identities=38%  Similarity=0.497  Sum_probs=60.4

Q ss_pred             hHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHH
Q 014689           74 HKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI  140 (420)
Q Consensus        74 pKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L  140 (420)
                      ||+.|+||||++++ .|.|++.. .|+.|.+.|+|.|.|+|..++.| .|.|||+||++||+.||..|
T Consensus         1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L   66 (67)
T smart00358        1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTGEG-EGSSKKEAKQRAAEAALRSL   66 (67)
T ss_pred             CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEEEe-ccCCHHHHHHHHHHHHHHhc
Confidence            68999999999999 78999987 79999999999999999888876 59999999999999999876

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.50  E-value=5.3e-14  Score=131.32  Aligned_cols=72  Identities=24%  Similarity=0.296  Sum_probs=63.6

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           69 PEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        69 ~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      ...+|||+.||||||+++... .|.+...||+|.++|++.|.|+|..|++| .|+|||+|||+||+.||..|..
T Consensus       106 ~K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G-~G~SKKeAEQ~AAk~AL~~L~~  177 (183)
T PHA03103        106 WKDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPA-IGSTKKEAKNNAAKLAMDKILN  177 (183)
T ss_pred             cccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence            356789999999999998875 55544489999999999999999999987 5999999999999999999865

>PHA03103 double-strand RNA-binding protein; Provisional

Probab=99.49  E-value=1.1e-13  Score=129.33  Aligned_cols=74  Identities=20%  Similarity=0.315  Sum_probs=64.1

Q ss_pred             CCCCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          153 NQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       153 ~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      +-...|||+.||||||+++... .|.+... ++|.+.|+++|.|+|+.+++|.|+|||+|||+||+.||..|....
T Consensus       105 d~K~kNpKS~LQE~~Qk~~~~~-y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~~~  179 (183)
T PHA03103        105 SWKDKNPCTVINEYCQITSRDW-SINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKEAKNNAAKLAMDKILNYV  179 (183)
T ss_pred             ccccCChhHHHHHHHHHhCCCe-EEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhcc
Confidence            3345689999999999999885 4443333 799999999999999999999999999999999999999997765

>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []

Probab=99.47  E-value=1.3e-13  Score=105.78  Aligned_cols=66  Identities=38%  Similarity=0.544  Sum_probs=58.0

Q ss_pred             hHHHHHHHHHHcCCCCCeEEEeccCCCCC-CeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHH
Q 014689           74 HKNRLQEHAQRSGIPLPVYQSHNEGFQHA-PKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI  140 (420)
Q Consensus        74 pKS~LQE~cQK~g~~lP~Yev~~eGP~H~-p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L  140 (420)
                      ||+.|+|||+++++.++.|.+...|+.|. +.|.|+|+|+|..++.| .|+|||+||+.||+.||+.|
T Consensus         1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~~g-~g~sKk~Ak~~AA~~al~~L   67 (67)
T PF00035_consen    1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYGEG-EGSSKKEAKQQAAKKALQKL   67 (67)
T ss_dssp             HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEeEe-ccCCHHHHHHHHHHHHHHhC
Confidence            68999999999998877666666665555 89999999999999877 59999999999999999986

It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....

>PRK12371 ribonuclease III; Reviewed

Probab=99.46  E-value=1.6e-13  Score=132.45  Aligned_cols=72  Identities=31%  Similarity=0.300  Sum_probs=66.7

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      ..|||+.||||||+++...|.|.++. +||+|.+.|+|+|+++|..+++| .|+|||+||++||+.||+.|...
T Consensus       160 ~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g-~G~sKK~Ae~~AA~~al~~~~~~  232 (235)
T PRK12371        160 RRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETG-EGRSKRAAEQVAAEKMLEREGVW  232 (235)
T ss_pred             cCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHhhhh
Confidence            46999999999999988899999887 79999999999999999999887 59999999999999999998653

>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]

Probab=99.46  E-value=4e-14  Score=141.72  Aligned_cols=158  Identities=22%  Similarity=0.242  Sum_probs=120.4

Q ss_pred             CCCCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccC
Q 014689           68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD  146 (420)
Q Consensus        68 l~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~  146 (420)
                      ++...||+++||||||+++|.+|.|+++. .|..|.+.|++.|.+++..- .| .|.|||.||++||.+||..|....+.
T Consensus       138 ~~~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~~-~G-kG~sKKiAKRnAAeamLe~l~~~~~~  215 (339)
T KOG3732|consen  138 YGQVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFTE-EG-KGPSKKIAKRNAAEAMLESLGFVKPN  215 (339)
T ss_pred             cccccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEecceee-ec-CCchHHHHHHHHHHHHHHHhccCCCC
Confidence            34578999999999999999999999999 79999999999999998653 44 69999999999999999999854421


Q ss_pred             -----------C-------CCCC---------------------CCCCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCC
Q 014689          147 -----------E-------GCPL---------------------INQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLP  187 (420)
Q Consensus       147 -----------E-------~lp~---------------------~~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~p~H~~  187 (420)
                                 +       ++..                     ......+|...|++......+.. .|.+.....-..
T Consensus       216 ~~p~~~~~~~~~p~~~~~~~~~~~s~~~s~~eel~~~k~~~~~~~~~~~~~~~~~~~~~~~e~~f~~-~y~d~~~~t~sg  294 (339)
T KOG3732|consen  216 KTPENLKVSLLKPASGRALGCSDKSLDNSEGEELSRLKACLKVIFNSAGLAYIKLLSEIAPENQFTV-TYPDIEELTLSG  294 (339)
T ss_pred             cCcccccccccccccCcCCccCccccccchhhhhhhhhhhhhhccccccccccccccccccccchhe-ecchhHHhhhhh
Confidence                       0       0100                     01112356667777666666665 666555434556


Q ss_pred             eEEEEEEECCEEee--eeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689          188 VFVSSLVFNGVTYT--GEPGRSKKEAEQLAARAVIRTLLVTSG  228 (420)
Q Consensus       188 ~F~~~V~I~Gk~~~--~G~G~SKK~AKq~AA~~AL~~L~~~s~  228 (420)
                      .|.|.|..++...+  .|.+.+-+.|...||+.+|++|..+.+
T Consensus       295 ~~~~~~e~s~~~~~~~~~s~~t~~~s~~~aa~~~L~yL~~~~~  337 (339)
T KOG3732|consen  295 QNQCLVELSTSPATVCHGSSITPPSAQSEAAHNALEYLKIMAG  337 (339)
T ss_pred             HHHHHHHhcCCCceeeeccCCCCCcccchhHHHHHHHHHHHhc
Confidence            77888877764443  378899999999999999999987653

>PRK12371 ribonuclease III; Reviewed

Probab=99.43  E-value=5.1e-13  Score=128.93  Aligned_cols=71  Identities=27%  Similarity=0.254  Sum_probs=65.5

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689          155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~  225 (420)
                      ...|||+.||||||+++...|.|.++..  ++|.+.|+|+|.|+|..+++|.|+|||+||+.||+.||+.|..
T Consensus       159 ~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Ae~~AA~~al~~~~~  231 (235)
T PRK12371        159 ARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAAEQVAAEKMLEREGV  231 (235)
T ss_pred             ccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHhhh
Confidence            3469999999999999998899998765  7899999999999999999999999999999999999999864

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=99.39  E-value=8.4e-13  Score=127.77  Aligned_cols=75  Identities=33%  Similarity=0.374  Sum_probs=69.4

Q ss_pred             CCCCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        68 l~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      ....+|||+.||||||+++..+|.|.++. +|++|++.|++.|.++|..++.| .|+|||+|||.||+.||..|...
T Consensus       157 ~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G-~G~skk~AEq~AA~~al~~l~~~  232 (235)
T COG0571         157 GDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTG-KGRSKKEAEQAAAEQALKKLGVK  232 (235)
T ss_pred             cccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEe-cccCHHHHHHHHHHHHHHHhccc
Confidence            34458999999999999999999999999 79999999999999999999988 59999999999999999998754

>PRK14718 ribonuclease III; Provisional

Probab=99.37  E-value=8e-13  Score=137.16  Aligned_cols=73  Identities=32%  Similarity=0.327  Sum_probs=66.2

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEE-eecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVT-YTSPNTFSHRKAAEQDVAKIALECISKKI  144 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~-~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~  144 (420)
                      .+|||+.||||||++++.+|+|.++. +||+|++.|++.|+|+|.. ++.| .|+|||+|||+||+.||+.|....
T Consensus       150 ~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G-~G~SKKeAEQ~AAk~AL~kL~~~~  224 (467)
T PRK14718        150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSG-SGASRRAAEQAAAKKALDEVTAVA  224 (467)
T ss_pred             ccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEE-EcCCHHHHHHHHHHHHHHHhcccc
Confidence            57999999999999999999999987 8999999999999999954 4666 599999999999999999998543

>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]

Probab=99.34  E-value=3.7e-12  Score=123.32  Aligned_cols=71  Identities=32%  Similarity=0.319  Sum_probs=67.1

Q ss_pred             CChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          157 VFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       157 ~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      .|||+.||||||+++..+|.|.++..  ++|++.|++.|.++|..+++|.|+|||+|||.||+.||..|....
T Consensus       161 ~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~skk~AEq~AA~~al~~l~~~~  233 (235)
T COG0571         161 KDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSKKEAEQAAAEQALKKLGVKE  233 (235)
T ss_pred             cChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCHHHHHHHHHHHHHHHhcccc
Confidence            68999999999999999999999887  789999999999999999999999999999999999999997543

>PRK14718 ribonuclease III; Provisional

Probab=99.32  E-value=4.2e-12  Score=131.85  Aligned_cols=71  Identities=21%  Similarity=0.288  Sum_probs=64.7

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEE-eeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVT-YTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~-~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      ..|||+.||||||++++..|.|.++.+  ++|++.|++.|.|+|.. ++.|.|.|||+|||.||+.||+.|...
T Consensus       150 ~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~AL~kL~~~  223 (467)
T PRK14718        150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKKALDEVTAV  223 (467)
T ss_pred             ccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHHHHHHhccc
Confidence            459999999999999999999999865  79999999999999954 478999999999999999999999743

>PRK12372 ribonuclease III; Reviewed

Probab=99.32  E-value=4e-12  Score=130.97  Aligned_cols=73  Identities=32%  Similarity=0.320  Sum_probs=66.0

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCE-EeecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGV-TYTSPNTFSHRKAAEQDVAKIALECISKKI  144 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~-~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~  144 (420)
                      .+|||+.||||||++++.+|+|.++. .|++|++.|++.|+|+|. .++.| .|.|||+|||+||+.||+.|....
T Consensus       150 ~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G-~G~SKKeAEQ~AAr~AL~kL~~~~  224 (413)
T PRK12372        150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSG-SGASRRAAEQAAAKKALDEVMAAA  224 (413)
T ss_pred             cCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEE-EeCCHHHHHHHHHHHHHHHHhccc
Confidence            57999999999999999999999887 899999999999999985 44666 599999999999999999998543

>PRK12372 ribonuclease III; Reviewed

Probab=99.29  E-value=1e-11  Score=127.97  Aligned_cols=72  Identities=21%  Similarity=0.311  Sum_probs=65.1

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCE-EeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGV-TYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk-~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      ..|||+.||||||++++..|.|.++.+  ++|++.|+|.|.|+|. .++.|.|.|||+|||.||+.||+.|....
T Consensus       150 ~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~AL~kL~~~~  224 (413)
T PRK12372        150 GKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKKALDEVMAAA  224 (413)
T ss_pred             cCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHHHHHHHhccc
Confidence            458999999999999999999998865  7999999999999985 45789999999999999999999998544

>PRK00102 rnc ribonuclease III; Reviewed

Probab=99.25  E-value=1.8e-11  Score=115.83  Aligned_cols=73  Identities=38%  Similarity=0.439  Sum_probs=67.1

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           69 PEHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        69 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      ....|||+.|+||||++++..|.|.++. +|+.|.+.|+|+|+++|..++.| .|.|||+||++||+.||+.|..
T Consensus       155 ~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g-~g~skk~Ae~~AA~~Al~~l~~  228 (229)
T PRK00102        155 DLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEG-TGSSKKEAEQAAAKQALKKLKE  228 (229)
T ss_pred             cccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhh
Confidence            3467999999999999999999999877 79999999999999999999987 5999999999999999999864

>PRK00102 rnc ribonuclease III; Reviewed

Probab=99.25  E-value=2.8e-11  Score=114.45  Aligned_cols=71  Identities=31%  Similarity=0.307  Sum_probs=65.3

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689          155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~  225 (420)
                      ...|||+.|+||||++++..|.|.++..  +.|.+.|+|+|.++|..+++|.|.|||+||+.||+.||+.|+.
T Consensus       156 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~skk~Ae~~AA~~Al~~l~~  228 (229)
T PRK00102        156 LVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSKKEAEQAAAKQALKKLKE  228 (229)
T ss_pred             ccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhh
Confidence            3468999999999999999999998765  5788999999999999999999999999999999999999864

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=99.23  E-value=2.8e-11  Score=99.14  Aligned_cols=70  Identities=26%  Similarity=0.348  Sum_probs=61.2

Q ss_pred             CChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEee---------cCCccccchHHHHHHHHHHHHHHH
Q 014689           72 LMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYT---------SPNTFSHRKAAEQDVAKIALECIS  141 (420)
Q Consensus        72 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~---------~Gg~GsSKKeAEq~AAk~AL~~L~  141 (420)
                      +++++.|+|+|++++|+.|.|++.. .||+|.+.|++.|.|.+..+.         .+..-.+||+|+..||+.+|..|+
T Consensus         1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg   80 (80)
T PF14709_consen    1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG   80 (80)
T ss_pred             CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence            4789999999999999999999987 799999999999999987662         112357999999999999999873

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=99.20  E-value=3.7e-11  Score=112.69  Aligned_cols=70  Identities=41%  Similarity=0.498  Sum_probs=64.7

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHH
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI  140 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L  140 (420)
                      ...|||+.|+||||++++..|.|++.. .|+.|.+.|.|.|+++|..++.|. |.|||+||++||+.||+.|
T Consensus       150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~-g~skk~A~~~AA~~Al~~l  220 (220)
T TIGR02191       150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGK-GKSKKEAEQNAAKAALEKL  220 (220)
T ss_pred             ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEee-eCCHHHHHHHHHHHHHHhC
Confidence            568999999999999998889999987 699999999999999999999874 9999999999999999865

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>TIGR02191 RNaseIII ribonuclease III, bacterial

Probab=99.19  E-value=6.4e-11  Score=111.06  Aligned_cols=69  Identities=33%  Similarity=0.374  Sum_probs=63.2

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHH
Q 014689          155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  223 (420)
Q Consensus       155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L  223 (420)
                      ...|||+.|+||||++++..|.|+++..  +.|.+.|.|.|.++|+.+++|.|.|||+||+.||+.||+.|
T Consensus       150 ~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A~~~AA~~Al~~l  220 (220)
T TIGR02191       150 TLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEAEQNAAKAALEKL  220 (220)
T ss_pred             ccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHhC
Confidence            4569999999999999998899998755  57889999999999999999999999999999999999865

This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.

>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1

Probab=99.13  E-value=1.3e-10  Score=95.22  Aligned_cols=67  Identities=28%  Similarity=0.408  Sum_probs=58.3

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEee---------e-eeecCHHHHHHHHHHHHHHHHH
Q 014689          158 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYT---------G-EPGRSKKEAEQLAARAVIRTLL  224 (420)
Q Consensus       158 n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~---------~-G~G~SKK~AKq~AA~~AL~~L~  224 (420)
                      +.++.|+|+|++++|..|.|++..+  |+|...|.+.|.|.+..+.         . --..+||+||..||+.+|..|+
T Consensus         2 ~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg   80 (80)
T PF14709_consen    2 SAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG   80 (80)
T ss_pred             CHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence            5789999999999999999999864  7999999999999986552         1 2358999999999999999874

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=99.07  E-value=5.8e-10  Score=118.33  Aligned_cols=125  Identities=33%  Similarity=0.385  Sum_probs=102.6

Q ss_pred             CeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccC-------CC----CC-------
Q 014689           90 PVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD-------EG----CP-------  150 (420)
Q Consensus        90 P~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~-------E~----lp-------  150 (420)
                      +.|.... .||.|.+.|.+.|.|+|..+-       ||.|+..||+.+++.+......       ++    +.       
T Consensus        10 ~~~~~~~q~~p~~~p~~~~~~~v~~~~~~-------~k~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (542)
T KOG2777|consen   10 LQYNLVSQTGPVHAPLFPFSVEVNGQEFP-------KKKAKQRAAEKALRVFLQFPEAHLSMGGTEGVNEDLTSDQADAF   82 (542)
T ss_pred             cccccccccCCCCCCcccceEEecccccc-------cccccchhhhHHHHHHhhcCCcccccCCCCccccccchhhhHHH
Confidence            5677666 799999999999999997642       9999999999999998876533       11    10       


Q ss_pred             -CCCCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          151 -LINQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       151 -~~~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                       .......|+++.|+||++     -+.|++...  +.|.+.|.|.|.|||+.|..| |.|||+||+.||..||+.|....
T Consensus        83 ~~~~~~~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~~  156 (542)
T KOG2777|consen   83 LSLGKEGKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKID  156 (542)
T ss_pred             HhhhhccCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhcc
Confidence             011225699999999998     347888766  789999999999999999888 99999999999999999997643

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=98.97  E-value=1.8e-09  Score=112.64  Aligned_cols=185  Identities=22%  Similarity=0.202  Sum_probs=128.2

Q ss_pred             cCCCCCccccccccccccc-------CCC------CCCCCCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEE
Q 014689           45 VQAPATASASKSVTAPVVL-------TPN------RVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSV  111 (420)
Q Consensus        45 ~~~pa~~~ask~~t~p~il-------~~~------~l~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V  111 (420)
                      ..+|..+..++.++.++..       ++.      -.+.++..++.|+||+|+....+|.|++.. ...+...|...|.+
T Consensus       335 ~~rP~lp~~~kli~~~Vq~~a~e~~~~p~~~ke~~~npngks~vCiLhEy~q~~lk~~pvyef~e-~~n~stpysa~v~~  413 (650)
T KOG4334|consen  335 LLRPMLPTTVKLINEFVQRLAKEIEDTPNIHKEYKANPNGKSKVCILHEYAQQCLKSLPVYEFAE-NDNNSTPYSAGVLP  413 (650)
T ss_pred             hhCCCCcchhHHHHHHHHHhhcccccCCCccCceeeCCCCceeeehHHHHHHHHhhhcceeehhh-ccCCCCcccccccc
Confidence            3456666666666666652       121      123467889999999999998999998765 23456789999999


Q ss_pred             CCEEeecCCccccchHHHHHHHHHHHHHHHhccc-------C---C-------CCCCCC----CC-----------CCCh
Q 014689          112 DGVTYTSPNTFSHRKAAEQDVAKIALECISKKIK-------D---E-------GCPLIN----QD-----------TVFC  159 (420)
Q Consensus       112 ~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~-------~---E-------~lp~~~----e~-----------~~n~  159 (420)
                      |+..||+| .|.|||.|+..||+.+|+.|.-.-.       +   +       .+.+.+    ++           -.++
T Consensus       414 d~~~yGsG-~g~sKK~Ak~~AAR~tLeiLIPd~~~~~~n~~d~k~~~~~k~q~~le~F~~I~Iedprv~e~ctk~~~psP  492 (650)
T KOG4334|consen  414 DLFPYGSG-VGASKKTAKLVAARDTLEILIPDLRVSEDNVCDGKVEEDGKQQGFLELFKKIKIEDPRVVEMCTKCAIPSP  492 (650)
T ss_pred             cccccccc-cccchHHHHHHHHHHHHHHhcchhhhcccccccccccccccchhHHHHhhcccccCchHHHHhhhcCCCCH
Confidence            99999998 5999999999999999999864321       1   0       010000    00           1256


Q ss_pred             hHHHHHHHHHcC-CC-C-CcEEEeecCCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh-cCchHHHH
Q 014689          160 KSILNEFAVKMN-LE-L-PAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT-SGSATILS  234 (420)
Q Consensus       160 Ks~LqE~cQk~~-~~-l-P~Y~~~~~p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~-s~~~~~l~  234 (420)
                      -.+|.+..+++. |. + -.++++........|++.|   |+....|.+++|+++||.|.++.|+.|... ..||.+|.
T Consensus       493 y~iL~~cl~Rn~g~~d~~ik~E~i~~~nqkse~im~~---Gkht~~~~cknkr~gkQlASQ~ilq~lHPh~~twGSlLr  568 (650)
T KOG4334|consen  493 YNILRDCLSRNLGWNDLVIKKEMIGNGNQKSEVIMIL---GKHTEEAECKNKRQGKQLASQRILQKLHPHLLTWGSLLR  568 (650)
T ss_pred             HHHHHHHHHhhcCCcceeeeeeccCCCCccceeEeee---ccceeeeeeechhHHHHHHHHHHHHHhCHHhhhHHHHHH
Confidence            678888777653 42 1 1233333334445688877   777778999999999999999999999754 35665544

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=98.12  E-value=8.5e-06  Score=84.89  Aligned_cols=72  Identities=22%  Similarity=0.257  Sum_probs=64.3

Q ss_pred             CCCChHHHHHHHHHHcCC------CCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           70 EHLMHKNRLQEHAQRSGI------PLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~------~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      .-.|+|+.||.||.....      .+|.|.+.. .||.+++.|.+.|+++|..+++| .|++.|+|+..||+.||+.+..
T Consensus       425 ~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~-~G~nik~Ae~rAA~~ALe~~~~  503 (533)
T KOG1817|consen  425 DWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATG-VGSNIKQAEMRAAMQALENLKM  503 (533)
T ss_pred             hccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeec-cCchHhHHHHHHHHHHHHHHHh
Confidence            347899999999998654      367888877 89999999999999999999998 5999999999999999999885

>KOG1817 consensus Ribonuclease [RNA processing and modification]

Probab=98.04  E-value=1.9e-05  Score=82.40  Aligned_cols=75  Identities=24%  Similarity=0.240  Sum_probs=65.6

Q ss_pred             CCCCCCChhHHHHHHHHHcCCC------CCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHH
Q 014689          152 INQDTVFCKSILNEFAVKMNLE------LPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  223 (420)
Q Consensus       152 ~~e~~~n~Ks~LqE~cQk~~~~------lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L  223 (420)
                      .+++..++++.||.+|-.....      +|-|.+...  +.+++.|.+.|.++|+.+++|.|+|.|.|+..||..||+.+
T Consensus       422 ~nq~wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~  501 (533)
T KOG1817|consen  422 RNQDWNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENL  501 (533)
T ss_pred             HhhhccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHH
Confidence            3567789999999999887653      577777654  68899999999999999999999999999999999999999


Q ss_pred             Hhh
Q 014689          224 LVT  226 (420)
Q Consensus       224 ~~~  226 (420)
                      ...
T Consensus       502 ~~d  504 (533)
T KOG1817|consen  502 KMD  504 (533)
T ss_pred             Hhh
Confidence            873

>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]

Probab=98.03  E-value=3.6e-06  Score=88.55  Aligned_cols=74  Identities=24%  Similarity=0.310  Sum_probs=65.2

Q ss_pred             CCCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          153 NQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       153 ~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      +....+.+..|+||+|+-...+|+|++.......-.|...|.+++..|++|.|.|||.||..|||.+|+.|..+
T Consensus       371 npngks~vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiLIPd  444 (650)
T KOG4334|consen  371 NPNGKSKVCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEILIPD  444 (650)
T ss_pred             CCCCceeeehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccccccccchHHHHHHHHHHHHHHhcch
Confidence            34456788999999999999999998877655667799999999999999999999999999999999999653

>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]

Probab=97.94  E-value=3e-05  Score=83.03  Aligned_cols=69  Identities=33%  Similarity=0.310  Sum_probs=61.1

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccC
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD  146 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~  146 (420)
                      ++||++.|+|+.+     -+.|.+.. .|+.|.+.|.|.|.|||..|. |+ |+|||+|++.||..||+.|....-.
T Consensus        89 ~~npv~ll~e~~~-----~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~-~~-~~sKk~ak~~aa~~al~~l~~~~~~  158 (542)
T KOG2777|consen   89 GKNPVSLLHELAN-----GLFFDFVNESGPQHAPKFVMSVVVDGRWFE-GG-GRSKKEAKQEAAMAALQVLFKIDEN  158 (542)
T ss_pred             cCCchHHHHHHhc-----ccceeeeccCCCCCCceEEEEEEECCEEcc-CC-CcchHHHHHHHHHHHHHHHHhccCC
Confidence            7899999999998     34788877 899999999999999999885 44 9999999999999999999876533

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=97.69  E-value=5.7e-05  Score=84.59  Aligned_cols=151  Identities=23%  Similarity=0.256  Sum_probs=118.6

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccC------
Q 014689           73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD------  146 (420)
Q Consensus        73 npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~------  146 (420)
                      |.|..|..||-++.+. |.|++..+|+....+|.|.|.+.+..+..-+....||.|+.+||+...+.|...++-      
T Consensus         2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr~Gk~n~~d~p   80 (1282)
T KOG0921|consen    2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVREGKMQQSDIP   80 (1282)
T ss_pred             cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhhhccccccCCc
Confidence            6789999999999987 899999999999999999999999877654456789999999999999988754310      


Q ss_pred             ----------------C-------------------CCC-----C------------C----------C---------CC
Q 014689          147 ----------------E-------------------GCP-----L------------I----------N---------QD  155 (420)
Q Consensus       147 ----------------E-------------------~lp-----~------------~----------~---------e~  155 (420)
                                      +                   ++|     .            +          .         +.
T Consensus        81 ~~~s~s~~~~~~l~~~~~a~~~~~~~~g~~~q~~~qd~p~~~~p~~~d~~~~~~g~~~~~~~qkae~~~e~ea~d~~~~i  160 (1282)
T KOG0921|consen   81 TLTSSSLEASSTWQDSETATMFCGGEDGNSFQESQQPIPQKRFPWSNNAYQRNEGTHEQYITQKAEEIAESETVDLNAEI  160 (1282)
T ss_pred             ccccccccCcccccccccccccccccccccCCCCCCCcccccccccccccccCCCCCchhHHHHhhhhhhhhhhccCccc
Confidence                            0                   000     0            0          0         00


Q ss_pred             -----CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEEC-----CEEeeeeeecCHHHHHHHHHHHHHHHHH
Q 014689          156 -----TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFN-----GVTYTGEPGRSKKEAEQLAARAVIRTLL  224 (420)
Q Consensus       156 -----~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~-----Gk~~~~G~G~SKK~AKq~AA~~AL~~L~  224 (420)
                           ..|-|..|++|-|+..+.. .|+.... ++|.+.|+.+..+-     -.....+.|++||.|....|+..+..|-
T Consensus       161 hg~wt~eN~K~~ln~~~q~~~~~~-~y~~~~~g~~~~~s~~~e~si~v~~~~~~~~~~~~gsnkk~~~~~ca~s~vrqm~  239 (1282)
T KOG0921|consen  161 HGNWTMENAKKALNEYLQKMRIQD-NYKYTIVGPEHVRSFEAEASIYVPQLNRNLVAKETGSNKKVAEASCALSLVRQLF  239 (1282)
T ss_pred             cCCCCcchhHHHHhHHHhhhhhcc-ccceeecCCccccchhhhHHHhhhhhchhhhhhhccccceecCcchHHHHHHHHH
Confidence                 1267999999999999977 8988776 79999999887652     2333568899999999999998887775


Q ss_pred             h
Q 014689          225 V  225 (420)
Q Consensus       225 ~  225 (420)
                      .
T Consensus       240 h  240 (1282)
T KOG0921|consen  240 H  240 (1282)
T ss_pred             H
Confidence            4

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=97.15  E-value=0.00049  Score=69.21  Aligned_cols=71  Identities=21%  Similarity=0.232  Sum_probs=64.6

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeec-C--CCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689          158 FCKSILNEFAVKMNLELPAYSTRQS-E--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  228 (420)
Q Consensus       158 n~Ks~LqE~cQk~~~~lP~Y~~~~~-p--~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s~  228 (420)
                      ++...|-++|+++++..|.|.++.+ +  .-.+.|.+-+.-|.+.++.|.|.|-|.|++.||+.||..|-.-.+
T Consensus       233 ~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~tp  306 (333)
T KOG3769|consen  233 WPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDHTP  306 (333)
T ss_pred             chHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcCCh
Confidence            6899999999999999999999887 3  567789999999999999999999999999999999999977653

>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]

Probab=96.94  E-value=0.0011  Score=66.72  Aligned_cols=78  Identities=15%  Similarity=0.103  Sum_probs=68.8

Q ss_pred             CCCCCCCChHHHHHHHHHHcCCCCCeEEEec-cC-CCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           66 NRVPEHLMHKNRLQEHAQRSGIPLPVYQSHN-EG-FQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        66 ~~l~~~~npKS~LQE~cQK~g~~lP~Yev~~-eG-P~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      ..|....+|...|-++|+++|+.-|+|.++. +| -.-.|.|.+.++-|.+.+|.| .|.|-+.|++.||++||..+-..
T Consensus       226 ~~m~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiYs~kkllGqG-~Gesl~~A~e~AA~dAL~k~y~~  304 (333)
T KOG3769|consen  226 REMWQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIYSGKKLLGQG-QGESLKLAEEQAARDALIKLYDH  304 (333)
T ss_pred             HhhccccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEeecCchhhccC-cchHHHHHHHHHHHHHHHHHHcC
Confidence            3456778999999999999999999999988 44 456799999999999999988 59999999999999999988764


Q ss_pred             c
Q 014689          144 I  144 (420)
Q Consensus       144 ~  144 (420)
                      .
T Consensus       305 t  305 (333)
T KOG3769|consen  305 T  305 (333)
T ss_pred             C
Confidence            4

>KOG3792 consensus Transcription factor NFAT, subunit NF90 [General function prediction only]

Probab=96.93  E-value=0.00086  Score=73.61  Aligned_cols=131  Identities=18%  Similarity=0.110  Sum_probs=90.6

Q ss_pred             eEE------Eec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcc----------cCC---CC-
Q 014689           91 VYQ------SHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI----------KDE---GC-  149 (420)
Q Consensus        91 ~Ye------v~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~----------~~E---~l-  149 (420)
                      .|.      ++. .||.|.++|++++.+||..+..  .|.+||.|+-.||++-|+.+.-..          .++   .. 
T Consensus       387 QYk~kv~p~Lvv~t~P~~~~~~t~e~r~~~~~~~a--~gps~~~~~wh~~~k~lq~~~~p~ga~~r~~~~ge~~a~~p~~  464 (816)
T KOG3792|consen  387 QYKQKVDPDLVVDTKPSHRPRRTMEVRVNGLPAEA--EGPSKKTAKWHAARKRLQNEGRPTGAAQRFGRMGEDPASMPEP  464 (816)
T ss_pred             eeccccCCCceeccCCcccchhhhhhhhcCCcccc--CCcccccchHHHHHHHhhccCCCccccccccccCCCcccCCCC
Confidence            677      555 8999999999999999988753  489999999999999998773110          000   00 


Q ss_pred             ----C-CC--------------------------CCCCCChhHHHHHHHHHcCCCCCcEEEeec---CCCCCeEEEEEEE
Q 014689          150 ----P-LI--------------------------NQDTVFCKSILNEFAVKMNLELPAYSTRQS---EALLPVFVSSLVF  195 (420)
Q Consensus       150 ----p-~~--------------------------~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~---p~H~~~F~~~V~I  195 (420)
                          + ..                          +..+..-|....|+..++. .. .|+...+   .+|.++|...|.+
T Consensus       465 ~~r~~as~ddr~a~~~~a~~~Pt~~~l~nVqr~vs~~~~alK~vsd~L~Ek~r-g~-k~El~set~~gs~~~R~v~gV~r  542 (816)
T KOG3792|consen  465 KGRRPASVDDRHANEKHAGIYPTEEELENVQRQVSHLERALKLVSDELAEKRR-GD-KYELPSETGTGSHDKRFVKGVMR  542 (816)
T ss_pred             CCcccCCCcchhhhccccccCccHHHHHHHHHhhhHHHHhhcchhHHHhhhcc-cc-ceecccccCCCCCCceeeeeeee
Confidence                0 00                          0001112222334444433 33 7888765   6899999999999


Q ss_pred             CCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          196 NGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       196 ~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      .|+.+ .|.|.++|-|+..|+.-+++.+...
T Consensus       543 vG~~a-kG~~~~gd~a~~~a~Lca~~pt~~l  572 (816)
T KOG3792|consen  543 VGILA-KGLLLNGDRAVELALLCAEKPTSGL  572 (816)
T ss_pred             eehhh-ccccccchHHHHHHHHhccCccccc
Confidence            99765 5999999999998887777665443

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=96.70  E-value=0.0069  Score=50.62  Aligned_cols=66  Identities=23%  Similarity=0.302  Sum_probs=44.1

Q ss_pred             hHHHHHHHHHcCC-----CCCcEEEeecCCCCCeEEEEEEECC----EEeeeeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689          160 KSILNEFAVKMNL-----ELPAYSTRQSEALLPVFVSSLVFNG----VTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  228 (420)
Q Consensus       160 Ks~LqE~cQk~~~-----~lP~Y~~~~~p~H~~~F~~~V~I~G----k~~~~G~G~SKK~AKq~AA~~AL~~L~~~s~  228 (420)
                      ++.|+.||++.--     ..|.|.+....+   .|.|+|.+-.    +.+.+....||+.||+.||-+|...|.....
T Consensus         2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~---~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~   76 (90)
T PF03368_consen    2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS---GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGE   76 (90)
T ss_dssp             HHHHHHHHTTSSS-TT--SS-EEEEEE--G----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHHHHhcCCCCCCccCCceEEEEEcCC---cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCC
Confidence            6789999988532     347888877632   8999999853    2233345799999999999999999987653

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases

Probab=95.23  E-value=0.046  Score=45.65  Aligned_cols=68  Identities=13%  Similarity=0.013  Sum_probs=43.7

Q ss_pred             HHHHHHHHHHcC-----CCCCeEEEeccCCCCCCeEEEEEEECCE---EeecCCccccchHHHHHHHHHHHHHHHhcccC
Q 014689           75 KNRLQEHAQRSG-----IPLPVYQSHNEGFQHAPKFRASVSVDGV---TYTSPNTFSHRKAAEQDVAKIALECISKKIKD  146 (420)
Q Consensus        75 KS~LQE~cQK~g-----~~lP~Yev~~eGP~H~p~FtvtV~V~G~---~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~  146 (420)
                      ++.|+.||++..     ...|.|.+...+.    .|.|+|.+=..   .-..|..-.||+.||+.||..|...|.+.+-.
T Consensus         2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~l   77 (90)
T PF03368_consen    2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGEL   77 (90)
T ss_dssp             HHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-
T ss_pred             HHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCC
Confidence            578999999842     2348899887543    79999998531   11223346899999999999999999987643

This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.

>PF14954 LIX1: Limb expression 1

Probab=95.03  E-value=0.12  Score=50.41  Aligned_cols=81  Identities=22%  Similarity=0.288  Sum_probs=57.6

Q ss_pred             CCChhHHHHHHHHHc---CCCC-----CcEEEeecCCCCCeEEEEEEECC-EEeee-eeecCHHHHHHHHHHHHHH-HHH
Q 014689          156 TVFCKSILNEFAVKM---NLEL-----PAYSTRQSEALLPVFVSSLVFNG-VTYTG-EPGRSKKEAEQLAARAVIR-TLL  224 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~---~~~l-----P~Y~~~~~p~H~~~F~~~V~I~G-k~~~~-G~G~SKK~AKq~AA~~AL~-~L~  224 (420)
                      ..|-+..||||=|.+   +..+     ..|+.+  |+..+.|.|-|++-| -.|+. -.+.||-+|+++||+.||. .+.
T Consensus        20 ~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs~--ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmNSvf   97 (252)
T PF14954_consen   20 DVNVVEALQEFWQMKQSRGADLKSEALVVYESV--PSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMNSVF   97 (252)
T ss_pred             cchHHHHHHHHHHHHHhccccCCCCCeeeeecc--CCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHHHHH
Confidence            458899999987643   2222     334433  566788999999965 44544 4689999999999999985 566


Q ss_pred             hhcCchHHHHHHHH
Q 014689          225 VTSGSATILSEIIK  238 (420)
Q Consensus       225 ~~s~~~~~l~d~i~  238 (420)
                      ++.++..+..|+|.
T Consensus        98 NEhPsRrIt~eFi~  111 (252)
T PF14954_consen   98 NEHPSRRITDEFIE  111 (252)
T ss_pred             hcCCcccccHHHHH
Confidence            77776656566665

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=92.17  E-value=0.068  Score=56.42  Aligned_cols=83  Identities=22%  Similarity=0.214  Sum_probs=68.0

Q ss_pred             cccccCCCCCCCC-CChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHH
Q 014689           59 APVVLTPNRVPEH-LMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIAL  137 (420)
Q Consensus        59 ~p~il~~~~l~~~-~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL  137 (420)
                      -.++++....+.. .++|..|.+||-+.+..-|.|++...   .+..|...+.++|..|..+.+-.++|.|+|.||..+|
T Consensus       361 ~r~~f~r~~~pa~~~~~k~~l~~~~~~~~~~~~~ye~~~~---~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l  437 (477)
T KOG2334|consen  361 GRKIFDRPTDPAKWDTPKMVLADLCVKTKANGPVYETVQR---TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVAL  437 (477)
T ss_pred             hcccccccCCCcCCCCHHHHHHHhhhhhcCCCcchhhhhh---hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHH
Confidence            3444454444444 68999999999999999999999874   4578999999999999888778999999999999999


Q ss_pred             HHHHhcc
Q 014689          138 ECISKKI  144 (420)
Q Consensus       138 ~~L~~~~  144 (420)
                      .......
T Consensus       438 ~~s~l~e  444 (477)
T KOG2334|consen  438 RKSNLWE  444 (477)
T ss_pred             HhcCcch
Confidence            8776543

>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]

Probab=90.56  E-value=0.34  Score=55.63  Aligned_cols=67  Identities=24%  Similarity=0.268  Sum_probs=56.6

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCEEee-eeeecCHHHHHHHHHHHHHHHHHh
Q 014689          158 FCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYT-GEPGRSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       158 n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk~~~-~G~G~SKK~AKq~AA~~AL~~L~~  225 (420)
                      |-|..|-.||.++.+. |+|++..+ +...-.|.|.|.+.+..+. .|...+||.|+.+||+.-.+.|-.
T Consensus         2 d~k~fly~~~~k~~~~-p~~d~~~~~~~~rqrf~ce~~~~~~~~~~~~~stnkKda~knac~dfv~ylvr   70 (1282)
T KOG0921|consen    2 DVKEFLYAWLGKNKYG-PTYDIRSEGRKGRQRFLCEVRVEGFGYTAVGNSTNKKDAATNAAQDFCQYLVR   70 (1282)
T ss_pred             cHHHHHHHHHhhhccC-cceehhhhcccchhheeeeeeccCCcceeeecccccchhhHHHHHHHHHHhhh
Confidence            5688999999999998 89999888 5556679999999886664 366788999999999999998853

>PF14954 LIX1: Limb expression 1

Probab=90.00  E-value=0.81  Score=44.79  Aligned_cols=67  Identities=27%  Similarity=0.298  Sum_probs=48.3

Q ss_pred             CCCChHHHHHHHHHH---cCCCC-----CeEEEeccCCCCCCeEEEEEEEC-CEEeecCCccccchHHHHHHHHHHHHH
Q 014689           70 EHLMHKNRLQEHAQR---SGIPL-----PVYQSHNEGFQHAPKFRASVSVD-GVTYTSPNTFSHRKAAEQDVAKIALEC  139 (420)
Q Consensus        70 ~~~npKS~LQE~cQK---~g~~l-----P~Yev~~eGP~H~p~FtvtV~V~-G~~~~~Gg~GsSKKeAEq~AAk~AL~~  139 (420)
                      ...|-+..|||+=|.   .|..+     ..|+.   .|...+.|.|-|++- |--||.-..-.||-+|+++||+.||-.
T Consensus        19 ~~vnvV~~LqeFWq~Kq~r~a~~~~~~lv~YEs---~ps~~ppyVcyVTLPGGSCFGnfq~C~tkAEARR~AAKiALmN   94 (252)
T PF14954_consen   19 GDVNVVEALQEFWQMKQSRGADLKSEALVVYES---VPSPSPPYVCYVTLPGGSCFGNFQNCPTKAEARRSAAKIALMN   94 (252)
T ss_pred             ccchHHHHHHHHHHHHHhccccCCCCCeeeeec---cCCCCCCeEEEEeCCCCCccCccccCCcHHHHHhhhHHHHHHH
Confidence            457999999995544   23333     34554   566678899999994 555655445689999999999999854

>KOG2334 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]

Probab=86.61  E-value=0.33  Score=51.47  Aligned_cols=68  Identities=29%  Similarity=0.236  Sum_probs=59.3

Q ss_pred             CChhHHHHHHHHHcCCCCCcEEEeecCCCCCeEEEEEEECCEEeeeeee-cCHHHHHHHHHHHHHHHHHhh
Q 014689          157 VFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       157 ~n~Ks~LqE~cQk~~~~lP~Y~~~~~p~H~~~F~~~V~I~Gk~~~~G~G-~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      ..++..|..||.+....-|.|++++.  -++.|...+++.|+.|..+.+ +|||.|+|.||..+|......
T Consensus       375 ~~~k~~l~~~~~~~~~~~~~ye~~~~--~d~lf~si~~~~~~~~~ssi~~~n~k~aeq~aa~~~l~~s~l~  443 (477)
T KOG2334|consen  375 DTPKMVLADLCVKTKANGPVYETVQR--TDKLFSSIATARGQKYNSSIWSPNKKSAEQDAAIVALRKSNLW  443 (477)
T ss_pred             CCHHHHHHHhhhhhcCCCcchhhhhh--hhhhhHHHhhhhhhhhhccccCcchhhHHHHHHHHHHHhcCcc
Confidence            46899999999999999999999884  357899999999999988765 999999999999999876544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	420
2l2n_A	103	Backbone 1h, 13c, And 15n Chemical Shift Assignment		2e-10
3adg_A	73	Structure Of Arabidopsis Hyl1 And Its Molecular Imp		2e-10
2l2m_A	77	Solution Structure Of The Second Dsrbd Of Hyl1 Leng		5e-06
3adj_A	76	Structure Of Arabidopsis Hyl1 And Its Molecular Imp		1e-05

>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For The First Dsrbd Of Protein Hyl1 Length = 103

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 34/86 (39%), Positives = 52/86 (60%), Gaps = 10/86 (11%)
Query: 73  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           + K+RLQE+AQ+  +P PVY+   EG  H   F+++V +DGV Y S   F +RKAAEQ  
Sbjct: 18  VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 77
Query: 133 AKIAL----------ECISKKIKDEG 148
           A++AL          +C+S+ + + G
Sbjct: 78  AEVALRELAKSSELSQCVSQPVHETG 103

>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications For Mirna Processing Length = 73

Iteration: 1
 Score = 63.5 bits (153), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/70 (45%), Positives = 47/70 (67%)
Query: 73  MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           + K+RLQE+AQ+  +P PVY+   EG  H   F+++V +DGV Y S   F +RKAAEQ  
Sbjct: 4   VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSA 63
Query: 133 AKIALECISK 142
           A++AL  ++K
Sbjct: 64  AEVALRELAK 73

>pdb|2L2M|A Chain A, Solution Structure Of The Second Dsrbd Of Hyl1 Length = 77

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 154 QDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPV--FVSSLVFNGVTYTGEPGRSKKEA 211
            +T  CK++L E+A KMN  +P Y  ++ E L  V  F  ++   G+ YTG   R+KK+A
Sbjct: 4   HETGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDA 63
Query: 212 EQLAARAVI 220
           E  A R  +
Sbjct: 64  EISAGRTAL 72

>pdb|3ADJ|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular Implications For Mirna Processing Length = 76

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 158 FCKSILNEFAVKMNLELPAYSTRQSEALLPV--FVSSLVFNGVTYTGEPGRSKKEAEQLA 215
            CK++L E+A KMN  +P Y  ++ E L  V  F  ++   G+ YTG   R+KK+AE  A
Sbjct: 5   LCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISA 64
Query: 216 ARAVI 220
            R  +
Sbjct: 65  GRTAL 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	420
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	6e-33
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	1e-09
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	2e-08
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	3e-23
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	8e-10
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	1e-22
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	2e-10
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	1e-20
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	1e-16
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	5e-16
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	7e-13
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	8e-13
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	8e-10
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	2e-12
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	5e-08
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	2e-12
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	9e-08
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	2e-11
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	1e-07
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	3e-11
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	4e-08
1x49_A	97	Interferon-induced, double-stranded RNA- activated	7e-11
1x49_A	97	Interferon-induced, double-stranded RNA- activated	4e-07
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	8e-11
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	2e-07
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	1e-10
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	2e-07
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	1e-10
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	3e-08
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	2e-10
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	1e-08
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	4e-10
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	5e-08
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	1e-09
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	7e-08
2dix_A	84	Interferon-inducible double stranded RNA- dependen	2e-09
2dix_A	84	Interferon-inducible double stranded RNA- dependen	7e-09
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	8e-09
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	8e-08
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	1e-08
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	8e-06
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	1e-08
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	4e-08
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	1e-08
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	4e-08
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	4e-08
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	9e-05
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	7e-08
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	2e-05
2l33_A	91	Interleukin enhancer-binding factor 3; structural	8e-07
2l33_A	91	Interleukin enhancer-binding factor 3; structural	2e-05
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	1e-06
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	2e-05
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	1e-06
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	3e-04
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	7e-06
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	7e-04
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	3e-05
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	8e-05
1uil_A	113	Double-stranded RNA-binding motif; structural geno	1e-04
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	2e-04
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	5e-04
1x48_A	88	Interferon-induced, double-stranded RNA- activated	2e-04

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score =  121 bits (305), Expect = 6e-33
 Identities = 35/157 (22%), Positives = 59/157 (37%), Gaps = 8/157 (5%)

Query: 74  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
               L  + Q+ G+ L   +  N G  H  +F   V +DG  +      S +K A+   A
Sbjct: 15  FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS-KKEAKNAAA 73

Query: 134 KIALECISKKIKDEGCPLINQD-------TVFCKSILNEFAVKMNLELPAYSTRQSEALL 186
           K+A+E ++K+ K     L+                ++N  A K  L +            
Sbjct: 74  KLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQCASGVHGP 133

Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
             F          Y+   G +K+EA+QLAA+     +
Sbjct: 134 EGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQI 170

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 1/106 (0%)

Query: 155 DTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQ 213
              F    LN +  K  + L       S       F   ++ +G  +    GRSKKEA+ 
Sbjct: 11  SAGFFMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKN 70

Query: 214 LAARAVIRTLLVTSGSATILSEIIKSKGKLYAALNKVKESNYSTQK 259
            AA+  +  L     + + L     +  +  +  N +   N   QK
Sbjct: 71  AAAKLAVEILNKEKKAVSPLLLTTTNSSEGLSMGNYIGLINRIAQK 116

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1 Length = 179

 Score = 53.0 bits (127), Expect = 2e-08
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 2/96 (2%)

Query: 54  SKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDG 113
           + S         +       +   +   AQ+  + +  Y+    G      F     +  
Sbjct: 86  AVSPLLLTTTNSSEGLSMGNYIGLINRIAQKKRLTVN-YEQCASGVHGPEGFHYKCKMGQ 144

Query: 114 VTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEGC 149
             Y+     + ++ A+Q  AK+A   I  +    GC
Sbjct: 145 KEYSIGTGST-KQEAKQLAAKLAYLQILSEETGSGC 179

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 91.5 bits (228), Expect = 3e-23
 Identities = 32/72 (44%), Positives = 47/72 (65%)

Query: 71  HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQ 130
             + K+RLQE+AQ+  +P PVY+   EG  H   F+++V +DGV Y S   F +RKAAEQ
Sbjct: 2   SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQ 61

Query: 131 DVAKIALECISK 142
             A++AL  ++K
Sbjct: 62  SAAEVALRELAK 73

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A Length = 73

 Score = 53.8 bits (130), Expect = 8e-10
 Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)

Query: 160 KSILNEFAVKMNLELPAYS-TRQSEALLPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAAR 217
           KS L E+A K  L  P Y   ++  +   +F S+++ +GV Y +     ++K AEQ AA 
Sbjct: 6   KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 65

Query: 218 AVIRTL 223
             +R L
Sbjct: 66  VALREL 71

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score = 91.0 bits (226), Expect = 1e-22
 Identities = 34/82 (41%), Positives = 50/82 (60%)

Query: 68  VPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 127
           V    + K+RLQE+AQ+  +P PVY+   EG  H   F+++V +DGV Y S   F +RKA
Sbjct: 13  VSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKA 72

Query: 128 AEQDVAKIALECISKKIKDEGC 149
           AEQ  A++AL  ++K  +   C
Sbjct: 73  AEQSAAEVALRELAKSSELSQC 94

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana} Length = 103

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 25/84 (29%), Positives = 43/84 (51%), Gaps = 2/84 (2%)

Query: 160 KSILNEFAVKMNLELPAYS-TRQSEALLPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAAR 217
           KS L E+A K  L  P Y   ++  +   +F S+++ +GV Y +     ++K AEQ AA 
Sbjct: 20  KSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAE 79

Query: 218 AVIRTLLVTSGSATILSEIIKSKG 241
             +R L  +S  +  +S+ +   G
Sbjct: 80  VALRELAKSSELSQCVSQPVHETG 103

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score = 84.6 bits (210), Expect = 1e-20
 Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 155 DTVFCKSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAE 212
               CK++L E+A KMN  +P Y  ++ E    +  F  ++   G+ YTG   R+KK+AE
Sbjct: 2   SHGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAE 61

Query: 213 QLAARAVIRTL 223
             A R  +  +
Sbjct: 62  ISAGRTALLAI 72

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A Length = 76

 Score = 73.5 bits (181), Expect = 1e-16
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)

Query: 70  EHLMHKNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAA 128
            H + KN LQE+AQ+    +P+YQ    E      +F  +V + G+ YT   T + +K A
Sbjct: 2   SHGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRT-KKDA 60

Query: 129 EQDVAKIALECI 140
           E    + AL  I
Sbjct: 61  EISAGRTALLAI 72

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 73.4 bits (180), Expect = 5e-16
 Identities = 20/73 (27%), Positives = 29/73 (39%), Gaps = 2/73 (2%)

Query: 66  NRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHR 125
              P  +  K  L E  +R  +P PVY++          F + V+V    Y S      +
Sbjct: 20  RAYPPQITPKMCLLEWCRREKLPQPVYETVQRT--IDRMFCSVVTVAEQKYQSTLWDKSK 77

Query: 126 KAAEQDVAKIALE 138
           K AEQ  A + L 
Sbjct: 78  KLAEQTAAIVCLR 90

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 128

 Score = 64.2 bits (156), Expect = 7e-13
 Identities = 25/111 (22%), Positives = 42/111 (37%), Gaps = 11/111 (9%)

Query: 125 RKAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEA 184
             ++   + K+A+    +    +  P         K  L E+  +  L  P Y T Q   
Sbjct: 3   SGSSGSGIIKMAIRFDRRAYPPQITP---------KMCLLEWCRREKLPQPVYETVQ-RT 52

Query: 185 LLPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAARAVIRTLLVTSGSATILS 234
           +  +F S +      Y +    +SKK AEQ AA   +R+  +  G     S
Sbjct: 53  IDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLPEGRLGEES 103

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 66.4 bits (163), Expect = 8e-13
 Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 3/71 (4%)

Query: 74  HKNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           +K  LQE  Q+     P Y+    EG  H  KF     +             +K AEQ  
Sbjct: 152 YKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLG--EGKSKKEAEQRA 209

Query: 133 AKIALECISKK 143
           A+  ++ + + 
Sbjct: 210 AEELIKLLEES 220

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A Length = 221

 Score = 57.5 bits (140), Expect = 8e-10
 Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 133 AKIALECISKKIKDEGCPLINQDTVFC--KSILNEFAVKMNLELPAYST--RQSEALLPV 188
           A    E   K  K++    I +  V    K+IL E   K   E P Y     +       
Sbjct: 124 ANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKRWKERPEYRLISVEGPHHKKK 183

Query: 189 FVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
           F+           GE G+SKKEAEQ AA  +I+ L
Sbjct: 184 FIVEAKIKEYRTLGE-GKSKKEAEQRAAEELIKLL 217

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 3/77 (3%)

Query: 74  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
            K  LQE     G+  P Y   + G  H  +F A V V    Y S    S +K AEQ  A
Sbjct: 164 WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRS-KKEAEQKAA 222

Query: 134 KIALECISKKIKDEGCP 150
             A + +  ++ D   P
Sbjct: 223 AAAWKAL--EVLDNAMP 237

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis} Length = 242

 Score = 52.6 bits (127), Expect = 5e-08
 Identities = 25/94 (26%), Positives = 35/94 (37%), Gaps = 6/94 (6%)

Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFV 190
             ++ L      +          D    K+ L E      L  P+Y    +       F 
Sbjct: 140 AREVILRLFGPLLDAAPTLGAGLD---WKTSLQELTAARGLGAPSYLVTSTGPDHDKEFT 196

Query: 191 SSLVFNGVTY-TGEPGRSKKEAEQLAARAVIRTL 223
           + +V     Y +G  GRSKKEAEQ AA A  + L
Sbjct: 197 AVVVVMDSEYGSGV-GRSKKEAEQKAAAAAWKAL 229

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 65.7 bits (161), Expect = 2e-12
 Identities = 20/71 (28%), Positives = 30/71 (42%), Gaps = 2/71 (2%)

Query: 74  HKNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           +K  LQE  Q      P Y             F   V V+G T  +    + +K AE++ 
Sbjct: 181 YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRT-KKEAEKEA 239

Query: 133 AKIALECISKK 143
           A+IA E + K+
Sbjct: 240 ARIAYEKLLKE 250

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1 Length = 252

 Score = 51.8 bits (125), Expect = 9e-08
 Identities = 26/95 (27%), Positives = 41/95 (43%), Gaps = 7/95 (7%)

Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE--ALLPVF 189
           + ++  +     I+      +  D    K+ L E     +   P Y   ++E      +F
Sbjct: 157 IKELFEQEFEFYIEKIMKGEMLFD---YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIF 213

Query: 190 VSSLVFNGVTY-TGEPGRSKKEAEQLAARAVIRTL 223
           V  +  NG T  TG+ GR+KKEAE+ AAR     L
Sbjct: 214 VVEVRVNGKTIATGK-GRTKKEAEKEAARIAYEKL 247

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 62.6 bits (153), Expect = 2e-11
 Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 74  HKNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           +K +LQE  Q      P Y+     G  H  +F  ++ +DG         S +K A+Q  
Sbjct: 179 YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGS-KKEAQQMA 237

Query: 133 AKIALECISK 142
           AKIALE +  
Sbjct: 238 AKIALEKLGA 247

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp} Length = 248

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 5/94 (5%)

Query: 132 VAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSE--ALLPVF 189
              IAL  I K        ++ +D    K+ L E       + P Y T ++     L  F
Sbjct: 155 AKTIALRLIEKNFPQIDAKILIKD---YKTKLQEITQGKIGQTPQYETVRAFGPDHLKQF 211

Query: 190 VSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
             +L+ +G         SKKEA+Q+AA+  +  L
Sbjct: 212 EIALMLDGKELARAIAGSKKEAQQMAAKIALEKL 245

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 59.1 bits (143), Expect = 3e-11
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 219
             IL+E+  ++    P Y+  + E     F +S+  +GVTY      SKK A+  AARA 
Sbjct: 19  VCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARAT 78

Query: 220 IRTLL 224
           +  L+
Sbjct: 79  LEILI 83

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 98

 Score = 49.8 bits (119), Expect = 4e-08
 Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 2/73 (2%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
              L E+ QR     PVY         +  F ASV++DGVTY S    S +K A+   A+
Sbjct: 19  VCILHEYMQRVLKVRPVYNFFECE-NPSEPFGASVTIDGVTYGSGTASS-KKLAKNKAAR 76

Query: 135 IALECISKKIKDE 147
             LE +      +
Sbjct: 77  ATLEILIPDFVKQ 89

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 57.8 bits (140), Expect = 7e-11
 Identities = 14/74 (18%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 74  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
           + ++L ++ Q  G+ +   +    G  H  +F   V +D   +      S ++ A    A
Sbjct: 16  YMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRS-KQEARNAAA 74

Query: 134 KIALECISKKIKDE 147
           K+A++ +  + K +
Sbjct: 75  KLAVDILDNENKVD 88

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 97

 Score = 47.0 bits (112), Expect = 4e-07
 Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 1/74 (1%)

Query: 151 LINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKK 209
           + +    F    LN++     + +       S       F   ++ +   +    GRSK+
Sbjct: 8   MASDTPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQ 67

Query: 210 EAEQLAARAVIRTL 223
           EA   AA+  +  L
Sbjct: 68  EARNAAAKLAVDIL 81

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 57.3 bits (139), Expect = 8e-11
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 3/70 (4%)

Query: 75  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
              LQE   + G  LP Y  +   G  H  +F  +  V+        + + +K A+++ A
Sbjct: 19  VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIG--SGTSKKLAKRNAA 76

Query: 134 KIALECISKK 143
              L  +S  
Sbjct: 77  AKMLLRVSGP 86

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 89

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
              L E  V+    LP Y+  Q    A    F  +         G  G SKK A++ AA 
Sbjct: 19  VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGS-GTSKKLAKRNAAA 77

Query: 218 AVIRTL 223
            ++  +
Sbjct: 78  KMLLRV 83

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 57.2 bits (138), Expect = 1e-10
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
           KN L     +  +  P Y+    G ++  KF   V V+G  Y      +++K A+ + A+
Sbjct: 9   KNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAAR 67

Query: 135 IALECISK--KIKDEGCP 150
             +  + +  ++K E  P
Sbjct: 68  DFVNYLVRINEVKSEEVP 85

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A Length = 99

 Score = 47.9 bits (114), Expect = 2e-07
 Identities = 18/67 (26%), Positives = 28/67 (41%), Gaps = 3/67 (4%)

Query: 160 KSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGE-PGRSKKEAEQLAAR 217
           K+ L  +  K  +  PAY  R         F+  +   G  Y G     +KK+A+  AAR
Sbjct: 9   KNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAAR 67

Query: 218 AVIRTLL 224
             +  L+
Sbjct: 68  DFVNYLV 74

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 3/69 (4%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
              LQE   + G  LP Y    E G  H  +F  +  V+        + + +K A+++ A
Sbjct: 18  VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIG--SGTSKKLAKRNAA 75

Query: 134 KIALECISK 142
              L  +  
Sbjct: 76  AKMLLRVHT 84

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens} Length = 88

 Score = 50.0 bits (120), Expect = 3e-08
 Identities = 17/66 (25%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
              L E  V+    LP Y+  Q    A    F  +         G  G SKK A++ AA 
Sbjct: 18  VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGS-GTSKKLAKRNAAA 76

Query: 218 AVIRTL 223
            ++  +
Sbjct: 77  KMLLRV 82

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 55.6 bits (135), Expect = 2e-10
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 75  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
              LQE A + G  LP Y  +   G  H  +F  +  V+    T   + + ++ A++  A
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETG--SGTSKQVAKRVAA 60

Query: 134 KIALE 138
           +  L 
Sbjct: 61  EKLLT 65

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1 Length = 69

 Score = 50.2 bits (121), Expect = 1e-08
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 160 KSILNEFAVKMNLELPAYST--RQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
              L E AV+    LP Y+            F  +        TG  G SK+ A+++AA 
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGS-GTSKQVAKRVAAE 61

Query: 218 AVIRTL 223
            ++   
Sbjct: 62  KLLTKF 67

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 55.0 bits (133), Expect = 4e-10
 Identities = 18/72 (25%), Positives = 28/72 (38%), Gaps = 7/72 (9%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTY--TSPNTFSHRKAAEQD 131
            +RL +  Q      P Y   +E G     +F   V V       T PN    +K A+++
Sbjct: 9   ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPN----KKIAKKN 64

Query: 132 VAKIALECISKK 143
            A+  L  +  K
Sbjct: 65  AAEAMLLQLGYK 76

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1 Length = 89

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 3/66 (4%)

Query: 160 KSILNEFAVKMNLELPAYS--TRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
            S L +       + P Y   + +       FV  +       TG  G +KK A++ AA 
Sbjct: 9   ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGT-GPNKKIAKKNAAE 67

Query: 218 AVIRTL 223
           A++  L
Sbjct: 68  AMLLQL 73

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 57.1 bits (137), Expect = 1e-09
 Identities = 38/175 (21%), Positives = 58/175 (33%), Gaps = 29/175 (16%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
              L E+ QR     PVY         +  F ASV++DGVTY S    S +K A+   A+
Sbjct: 25  VCILHEYMQRVLKVRPVYNFFECE-NPSEPFGASVTIDGVTYGSGTASS-KKLAKNKAAR 82

Query: 135 IALE---------CISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELP---------- 175
             LE            +K KD              S + E   K  L  P          
Sbjct: 83  ATLEILIPDFVKQTSEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHECLKR 142

Query: 176 -------AYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
                  +                +     T  G   ++K+  +QLA++ +++ L
Sbjct: 143 NHGMGDTSIKFEVVPGKNQKSEYVMACGKHTVRGW-CKNKRVGKQLASQKILQLL 196

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens} Length = 232

 Score = 52.1 bits (124), Expect = 7e-08
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 219
             IL+E+  ++    P Y+  + E     F +S+  +GVTY      SKK A+  AARA 
Sbjct: 25  VCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARAT 84

Query: 220 IRTLL 224
           +  L+
Sbjct: 85  LEILI 89

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
             +L+E+ +K    +P Y   +S+    +P F   +    +T TGE G SKK A+  AA 
Sbjct: 11  IQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDITCTGE-GTSKKLAKHRAAE 68

Query: 218 AVIRTL 223
           A I  L
Sbjct: 69  AAINIL 74

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 84

 Score = 51.6 bits (124), Expect = 7e-09
 Identities = 16/70 (22%), Positives = 31/70 (44%), Gaps = 4/70 (5%)

Query: 75  KNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
              L E+  ++   +PVY+   ++   H P F   V+V  +T T     + +K A+   A
Sbjct: 11  IQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDITCTG--EGTSKKLAKHRAA 67

Query: 134 KIALECISKK 143
           + A+  +   
Sbjct: 68  EAAINILKAN 77

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 51.6 bits (124), Expect = 8e-09
 Identities = 23/86 (26%), Positives = 34/86 (39%), Gaps = 4/86 (4%)

Query: 59  APVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYT 117
            P+              + LQE+  R G   PVY     EG  H P F   V+V   + T
Sbjct: 1   GPLGSHMLAANPGKTPISLLQEYGTRIG-KTPVYDLLKAEGQAHQPNFTFRVTVGDTSCT 59

Query: 118 SPNTFSHRKAAEQDVAKIALECISKK 143
                  +KAA+   A++AL+ +   
Sbjct: 60  G--QGPSKKAAKHKAAEVALKHLKGG 83

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens} Length = 90

 Score = 48.9 bits (117), Expect = 8e-08
 Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 4/66 (6%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
            S+L E+  ++    P Y   ++E  A  P F   +     + TG+ G SKK A+  AA 
Sbjct: 17  ISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDTSCTGQ-GPSKKAAKHKAAE 74

Query: 218 AVIRTL 223
             ++ L
Sbjct: 75  VALKHL 80

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 17/71 (23%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 74  HKNRLQEHA-----QRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 127
            K++LQ+       +     +P+Y++    G  HA  +  +V   G         S  + 
Sbjct: 3   PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPS-IQQ 61

Query: 128 AEQDVAKIALE 138
           AE   A  ALE
Sbjct: 62  AEMGAAMDALE 72

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens} Length = 85

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 9/72 (12%)

Query: 160 KSILNEFAVKMNL-----ELPAYSTRQSE--ALLPVFVSSLVFNGVTY-TGEPGRSKKEA 211
           KS L +  + +       ++P Y T Q+   +    +  ++ F G     G+ G S ++A
Sbjct: 4   KSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGK-GPSIQQA 62

Query: 212 EQLAARAVIRTL 223
           E  AA   +   
Sbjct: 63  EMGAAMDALEKY 74

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 50.8 bits (122), Expect = 1e-08
 Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
            S ++E  +K N+    +   + E  A +  F+++ +   +   GE G  KK +++ AA 
Sbjct: 10  ISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTEGE-GNGKKVSKKRAAE 67

Query: 218 AVIRTL 223
            ++  L
Sbjct: 68  KMLVEL 73

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A Length = 76

 Score = 49.3 bits (118), Expect = 4e-08
 Identities = 10/69 (14%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 75  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
            +++ E   +  +    ++    EG  H   F  +  V  +        + +K +++  A
Sbjct: 10  ISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIVTEG--EGNGKKVSKKRAA 66

Query: 134 KIALECISK 142
           +  L  + K
Sbjct: 67  EKMLVELQK 75

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 55.2 bits (133), Expect = 1e-08
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 5/72 (6%)

Query: 74  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
            KN L E  Q + +   ++          P FR  V +  +        S  + AE   A
Sbjct: 256 AKNELAELLQINKLGHKLH---YRKLTEMPPFRVEVKIGDILLDEAEGNS-IREAEHRAA 311

Query: 134 KIALECISKKIK 145
              LE   + ++
Sbjct: 312 MKVLEND-ELLR 322

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora} Length = 341

 Score = 53.6 bits (129), Expect = 4e-08
 Identities = 18/99 (18%), Positives = 39/99 (39%), Gaps = 7/99 (7%)

Query: 126 KAAEQDVAKIALECISKKIKDEGCPLINQDTVFCKSILNEFAVKMNLELPAYSTRQSEAL 185
              ++ + +++ + ++K  +      +N++    K+ L E      L    +  + +E  
Sbjct: 226 LDIKEWLEELSEKKLAKSSQMVIKEPLNKN---AKNELAELLQINKLGHKLHYRKLTEM- 281

Query: 186 LPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAARAVIRTL 223
            P F   +    +     E G S +EAE  AA  V+   
Sbjct: 282 -PPFRVEVKIGDILLDEAE-GNSIREAEHRAAMKVLEND 318

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 49.2 bits (118), Expect = 4e-08
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 219
             ILNE    +  +     + +S A    FV S+V +G  + G  GR+KK A+  AA++ 
Sbjct: 7   VMILNELRPGLKYDFL-SESGESHA--KSFVMSVVVDGQFFEGS-GRNKKLAKARAAQSA 62

Query: 220 IRTLL 224
           + T+ 
Sbjct: 63  LATVF 67

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B Length = 71

 Score = 39.6 bits (93), Expect = 9e-05
 Identities = 15/48 (31%), Positives = 20/48 (41%), Gaps = 6/48 (12%)

Query: 95  HNEGFQHAPKFRASVSVDGVTYTS--PNTFSHRKAAEQDVAKIALECI 140
              G  HA  F  SV VDG  +     N    +K A+   A+ AL  +
Sbjct: 23  SESGESHAKSFVMSVVVDGQFFEGSGRN----KKLAKARAAQSALATV 66

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 48.4 bits (116), Expect = 7e-08
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 219
              LNE    +  EL + +    +     FV  +  +G  + G  G +KK A+  AA A 
Sbjct: 10  VMELNEKRRGLKYELISETGGSHD---KRFVMEVEVDGQKFQGA-GSNKKVAKAYAALAA 65

Query: 220 IRTLL 224
           +  L 
Sbjct: 66  LEKLF 70

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens} Length = 75

 Score = 41.1 bits (97), Expect = 2e-05
 Identities = 19/71 (26%), Positives = 27/71 (38%), Gaps = 12/71 (16%)

Query: 75  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTY--TSPNTFSHRKAAEQD 131
              L E  +R G+    Y+     G  H  +F   V VDG  +     N    +K A+  
Sbjct: 10  VMELNE--KRRGL---KYELISETGGSHDKRFVMEVEVDGQKFQGAGSN----KKVAKAY 60

Query: 132 VAKIALECISK 142
            A  ALE +  
Sbjct: 61  AALAALEKLFP 71

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 45.9 bits (109), Expect = 8e-07
 Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)

Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
             FV  +  +G  + G  G +KK A+  AA A +  L
Sbjct: 44  KRFVMEVEVDGQKFQGA-GSNKKVAKAYAALAALEKL 79

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens} Length = 91

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 18/72 (25%), Positives = 27/72 (37%), Gaps = 9/72 (12%)

Query: 75  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTY--TSPNTFSHRKAAEQD 131
           KN + E  ++       Y+     G  H  +F   V VDG  +     N    +K A+  
Sbjct: 17  KNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKFQGAGSN----KKVAKAY 70

Query: 132 VAKIALECISKK 143
            A  ALE +   
Sbjct: 71  AALAALEKLFPD 82

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 224
           P+FV S+  NG  + G  G +KK+A+  AA   +R+ +
Sbjct: 34  PLFVMSVEVNGQVFEGS-GPTKKKAKLHAAEKALRSFV 70

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A Length = 73

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 20/75 (26%), Positives = 31/75 (41%), Gaps = 5/75 (6%)

Query: 69  PEHLMHKNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKA 127
           P  ++ KN L +  +    P   Y      G  HAP F  SV V+G  +    +   +K 
Sbjct: 1   PGPVLPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEG--SGPTKKK 56

Query: 128 AEQDVAKIALECISK 142
           A+   A+ AL    +
Sbjct: 57  AKLHAAEKALRSFVQ 71

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97

 Score = 45.2 bits (107), Expect = 1e-06
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)

Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSE 235
           PVF  S+  +G TY    G SKK A+   A  V++ +   +G    +S 
Sbjct: 46  PVFTMSVDVDGTTYEAS-GPSKKTAKLHVAVKVLQAMGYPTGFDADISG 93

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1 Length = 97

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 75  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
            N L    Q    P   Y+     G  HAP F  SV VDG TY +  +   +K A+  VA
Sbjct: 19  MNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEA--SGPSKKTAKLHVA 74

Query: 134 KIALECI 140
              L+ +
Sbjct: 75  VKVLQAM 81

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 46.3 bits (110), Expect = 7e-06
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 6/72 (8%)

Query: 73  MHKNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
           + ++ ++E  +      P           +  K R +V V G         S  + A+  
Sbjct: 198 VPRSPVRELLEM----EPETAKFSPAERTYDGKVRVTVEVVGKGKFKGVGRS-YRIAKSA 252

Query: 132 VAKIALECISKK 143
            A+ AL  +   
Sbjct: 253 AARRALRSLKAN 264

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A Length = 265

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 1/36 (2%)

Query: 188 VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
           V V+  V     + G  GRS + A+  AAR  +R+L
Sbjct: 227 VRVTVEVVGKGKFKGV-GRSYRIAKSAAARRALRSL 261

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114

 Score = 42.2 bits (99), Expect = 3e-05
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)

Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 224
           P+F  S+  +G  Y G+ GRSKK A   AA   +R+ +
Sbjct: 64  PLFTISVEVDGQKYLGQ-GRSKKVARIEAAATALRSFI 100

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster} Length = 114

 Score = 40.7 bits (95), Expect = 8e-05
 Identities = 19/80 (23%), Positives = 26/80 (32%), Gaps = 5/80 (6%)

Query: 64  TPNRVPEHLMHKNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTF 122
                      KN +    +       +Y+     G  HAP F  SV VDG  Y      
Sbjct: 26  KKMCKERIPQPKNTVAMLNELR--HGLIYKLESQTGPVHAPLFTISVEVDGQKYLG--QG 81

Query: 123 SHRKAAEQDVAKIALECISK 142
             +K A  + A  AL    +
Sbjct: 82  RSKKVARIEAAATALRSFIQ 101

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A Length = 113

 Score = 40.4 bits (94), Expect = 1e-04
 Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 5/70 (7%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVD----GVTYTSPNTFSHRKAAEQ 130
           K RL ++ Q+  I    Y+    G  H   F A +++     G    +    S++K A Q
Sbjct: 29  KARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQ 87

Query: 131 DVAKIALECI 140
             A   +  +
Sbjct: 88  SCALSLVRQL 97

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 41.5 bits (96), Expect = 2e-04
 Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)

Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL 223
             FV S+V +G  + G  GR+KK A+  AA++ + T+
Sbjct: 188 KSFVMSVVVDGQFFEGS-GRNKKLAKARAAQSALATV 223

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus} Length = 236

 Score = 40.3 bits (93), Expect = 5e-04
 Identities = 24/144 (16%), Positives = 50/144 (34%), Gaps = 2/144 (1%)

Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGSATILSEIIKSKGKLYAA 246
           P+FV S+  NG  + G  G +KK+A+  AA   +R+ +    ++     + ++       
Sbjct: 34  PLFVMSVEVNGQVFEGS-GPTKKKAKLHAAEKALRSFVQFPNASEAHLAMGRTLSVNTDF 92

Query: 247 LNKVKESNYSTQKIATSYVPTTAIPKSSSGIHPIPTTPEASVGMHSIPTIPEATAGIHPT 306
            +   +   +      +   +   P           +    V + + P     T    P 
Sbjct: 93  TSDQADFPDTLFNGFETPDKSE-PPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPI 151

Query: 307 PAITEASTGMHPTSAAIEVSTGMH 330
           P      +G +P     E+  G+ 
Sbjct: 152 PPPFPPPSGKNPVMILNELRPGLK 175

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1 Length = 88

 Score = 38.9 bits (90), Expect = 2e-04
 Identities = 18/64 (28%), Positives = 28/64 (43%)

Query: 161 SILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVI 220
            ++N FA K  L +       +  L   F+         Y    G +K+EA+QLAA+   
Sbjct: 10  GLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAY 69

Query: 221 RTLL 224
           + LL
Sbjct: 70  QKLL 73

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	420
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	100.0
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.96
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.93
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.77
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.76
3adj_A	76	F21M12.9 protein; HYL1, miRNA processing, RNA bind	99.75
3adg_A	73	F21M12.9 protein; HYL1, miRNA processing mechanism	99.75
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.75
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.74
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.74
1di2_A	69	XLRBPA, double stranded RNA binding protein A; pro	99.73
2cpn_A	89	TAR RNA-binding protein 2; double-stranded RNA bin	99.73
3adl_A	88	RISC-loading complex subunit tarbp2; TRBP2, miRNA	99.73
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.73
1uhz_A	89	Staufen (RNA binding protein) homolog 2; DSRM, sta	99.72
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.72
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.72
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.71
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.71
2khx_A	85	Ribonuclease 3; drosha, RNA binding domain, hydrol	99.7
2l2n_A	103	Hyponastic leave 1; DSRBD, miRNA, RNA binding prot	99.7
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.7
2dix_A	84	Interferon-inducible double stranded RNA- dependen	99.69
1ekz_A	76	DSRBDIII, maternal effect protein (staufen); struc	99.69
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.68
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.68
1x49_A	97	Interferon-induced, double-stranded RNA- activated	99.68
3llh_A	90	RISC-loading complex subunit tarbp2; DSRBD, DSRM,	99.68
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.67
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.67
2b7t_A	73	Double-stranded RNA-specific editase 1; RNA editin	99.66
1whq_A	99	RNA helicase A; double-stranded RNA binding domain	99.66
1x48_A	88	Interferon-induced, double-stranded RNA- activated	99.66
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.65
1x47_A	98	DGCR8 protein; structural genomics, DSRM domain, N	99.64
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.63
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.63
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.63
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.63
2dmy_A	97	Spermatid perinuclear RNA-binding protein; DSRM do	99.63
1uil_A	113	Double-stranded RNA-binding motif; structural geno	99.62
1t4n_A	94	Ribonuclease III; DSRBD, RNA-binding, hydrolase; N	99.62
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.62
1whn_A	128	Hypothetical protein riken cDNA 2310016K04; double	99.61
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.61
2l33_A	91	Interleukin enhancer-binding factor 3; structural	99.6
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.58
1t4o_A	117	Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydro	99.57
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.55
2ljh_A	114	Double-stranded RNA-specific editase ADAR; DSRBD,	99.54
2b7v_A	71	Double-stranded RNA-specific editase 1; RNA editin	99.53
1qu6_A	179	Protein kinase PKR; dsRNA-binding domain, solution	99.52
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.45
3p1x_A	75	Interleukin enhancer-binding factor 3; structural	99.44
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.44
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.43
2yt4_A	232	Protein DGCR8; DSRBD, RNA binding domain, RNA bind	99.43
2nug_A	221	Ribonuclease III, RNAse III; dsRNA, RNA interferen	99.42
1o0w_A	252	Ribonuclease III, RNAse III; TM1102, structural ge	99.42
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	99.35
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.33
3n3w_A	248	Ribonuclease III; nuclease domain, ribonuclase III	99.3
2a11_A	242	Ribonuclease III, RNAse III; nuclease domain, stru	99.27
2l3j_A	236	Double-stranded RNA-specific editase 1; editing, d	99.23
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	98.89
3rv0_A	341	K. polysporus DCR1; RNAse III enzyme, RNA binding	98.88
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	98.63
3c4b_A	265	Endoribonuclease dicer; RNAse, dsRNA binding prote	98.47
2kou_A	102	Dicer-like protein 4; ATP-binding, endonuclease, h	96.59
2kou_A	102	Dicer-like protein 4; ATP-binding, endonuclease, h	93.2
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	89.46
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	82.26

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=100.00  E-value=1.5e-32  Score=251.27  Aligned_cols=155  Identities=23%  Similarity=0.242  Sum_probs=134.5

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccCCC-
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDEG-  148 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~E~-  148 (420)
                      ..|||+.||||||++++. |.|+++. +||+|++.|+++|+|+|..++.| .|+|||+|||+||+.||+.|........ 
T Consensus        12 ~~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~~~~~~~p   89 (179)
T 1qu6_A           12 AGFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEG-EGRSKKEAKNAAAKLAVEILNKEKKAVSP   89 (179)
T ss_dssp             SCSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEE-ECCSSHHHHHHHHHHHHHHHHSCCSCCSC
T ss_pred             CCCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEec-CCCCHHHHHHHHHHHHHHHHhcccccCCC
Confidence            479999999999999987 8999886 89999999999999999988887 5999999999999999999987543210 


Q ss_pred             ----CC--CCCCCCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHH
Q 014689          149 ----CP--LINQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIR  221 (420)
Q Consensus       149 ----lp--~~~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~  221 (420)
                          .+  ..+....|||++||||||+++|.+ .|++... ++|.+.|+|+|.|+|+.|+.|.|+|||+||++||+.||.
T Consensus        90 ~~~~~~~~~e~~~~~n~~~~L~E~~qk~~~~~-~Y~~~~~G~~h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~  168 (179)
T 1qu6_A           90 LLLTTTNSSEGLSMGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYL  168 (179)
T ss_dssp             SSCCCSCSSCCCCCCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHH
T ss_pred             ccCCCCCcccccCCCCHHHHHHHHHHhcCCcc-eEEecCcCCCCCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHH
Confidence                00  112235699999999999999997 9998765 789999999999999988999999999999999999999


Q ss_pred             HHHhhcC
Q 014689          222 TLLVTSG  228 (420)
Q Consensus       222 ~L~~~s~  228 (420)
                      .|.....
T Consensus       169 ~L~~~~~  175 (179)
T 1qu6_A          169 QILSEET  175 (179)
T ss_dssp             HHHHCCC
T ss_pred             HHhcccC
Confidence            9976543

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.96  E-value=2.5e-28  Score=232.55  Aligned_cols=151  Identities=25%  Similarity=0.216  Sum_probs=124.7

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccCC-
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKDE-  147 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~E-  147 (420)
                      ..+|||+.||||||++++.+|.|+++. +||+  +.|+++|+|+|..|+.| .|+|||+|||+||+.||..|....+.. 
T Consensus        20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~--~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~aL~~L~~~~~~~~   96 (232)
T 2yt4_A           20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPDFVKQT   96 (232)
T ss_dssp             TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT--SCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHSTTTTTC-
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC--CcEEEEEEECCEEEeec-CCCCHHHHHHHHHHHHHHHHHhhccccC
Confidence            458999999999999999999999987 7987  99999999999999887 599999999999999999997742210 


Q ss_pred             ---------C------CCCC---------CCCCCChhHHHHHHHHHcCCCCCcEE--Eeec--CCCCCeEEEEEEECCEE
Q 014689          148 ---------G------CPLI---------NQDTVFCKSILNEFAVKMNLELPAYS--TRQS--EALLPVFVSSLVFNGVT  199 (420)
Q Consensus       148 ---------~------lp~~---------~e~~~n~Ks~LqE~cQk~~~~lP~Y~--~~~~--p~H~~~F~~~V~I~Gk~  199 (420)
                               .      ++..         .....|||+.||| ||++++.+|.|+  ++.+  ++|.+.|+|+|.  + .
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~kt~LqE-~~~~~~~~p~Y~~~~~~~~Gp~h~~~F~~~v~--~-~  172 (232)
T 2yt4_A           97 SEEKPKDSEELEYFNHISIEDSRVYELTSKAGLLSPYQILHE-CLKRNHGMGDTSIKFEVVPGKNQKSEYVMACG--K-H  172 (232)
T ss_dssp             -------CCGGGGGGGSBTTCTTHHHHHHHHTCCCHHHHHHH-HHHTSSSCCCEEEECC------CCEEEEEEET--T-E
T ss_pred             CccccccccchhhcccccccCCcccccccccCCCChhHHHHH-HHHcCCCCCceEEEEeecCCCCCCCEEEEEEE--E-E
Confidence                     0      0000         0123589999999 999999999999  5543  799999999987  4 5


Q ss_pred             eeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          200 YTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       200 ~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      ++.|.|+|||+|||.||+.||..|....
T Consensus       173 ~~~G~G~sKK~Aeq~AA~~aL~~L~~~~  200 (232)
T 2yt4_A          173 TVRGWCKNKRVGKQLASQKILQLLHPHV  200 (232)
T ss_dssp             EEEEEESSHHHHHHHHHHHHHHHHSTTC
T ss_pred             EEEEEeCCHHHHHHHHHHHHHHHHHhhc
Confidence            6789999999999999999999998765

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.93  E-value=3.3e-25  Score=211.33  Aligned_cols=146  Identities=27%  Similarity=0.285  Sum_probs=120.9

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccC---
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD---  146 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~---  146 (420)
                      ..|+|+.|++|++.  +..|.|+++. +||+|+++|+++|+|+|..+ .| .|+|||+|||+||+.||+.|......   
T Consensus         3 ~~~~K~~l~~l~e~--~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~al~~l~~~~~~~~~   78 (236)
T 2l3j_A            3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG-SGPTKKKAKLHAAEKALRSFVQFPNASEA   78 (236)
T ss_dssp             CCCTHHHHHHHHHH--CSSCEEEEEEEESCTTSCEEEEEEEETTEEE-EE-EESHHHHHHHHHHHHHHHHHTTCSSCSCC
T ss_pred             CCCCcCHHHHHhhc--CCCceEEEEeccCCCCCCeEEEEEEECCEEE-EE-ecCChHHHHHHHHHHHHHHHHhccccccc
Confidence            36899999999987  3578999987 89999999999999999886 55 69999999999999999999763210   


Q ss_pred             -----------------C-CCC----------------------------------C--------------------CCC
Q 014689          147 -----------------E-GCP----------------------------------L--------------------INQ  154 (420)
Q Consensus       147 -----------------E-~lp----------------------------------~--------------------~~e  154 (420)
                                       + +++                                  +                    ...
T Consensus        79 ~~amg~~~~~~~d~~~d~~~~p~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~p~~~~~~~~  158 (236)
T 2l3j_A           79 HLAMGRTLSVNTDFTSDQADFPDTLFNGFETPDKSEPPFYVGSNGDDSFSSSGDVSLSASPVPASLTQPPLPIPPPFPPP  158 (236)
T ss_dssp             CCSCCCCCCCTTSCCSCCSCCCCCCCCCCCCSSSSCCCSSCSSSCSSSSSCSCCCSSCCCCCCCCSSSCSSSSCCCCCCC
T ss_pred             hhhhccCCCCCCCCcccccccchhhcccccccccccccccccccccccccccchhhccccccccccccccCccccccCCC
Confidence                             0 000                                  0                    000


Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      ...|||++||||     +..|.|+++.+  ++|.++|+|+|.|+|+.+ .|.|+|||+|||.||+.||..|...
T Consensus       159 ~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~sKK~Aeq~AA~~al~~L~~~  226 (236)
T 2l3j_A          159 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL  226 (236)
T ss_dssp             SSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHccc
Confidence            235999999999     46789998765  799999999999999876 8999999999999999999999643

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.77  E-value=1e-18  Score=138.33  Aligned_cols=70  Identities=43%  Similarity=0.585  Sum_probs=66.0

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCcc-ccchHHHHHHHHHHHHHHH
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTF-SHRKAAEQDVAKIALECIS  141 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~G-sSKKeAEq~AAk~AL~~L~  141 (420)
                      ..|||+.||||||++++.+|.|+++.+||+|++.|++.|+|+|..++.| .| +|||+||++||+.||..|.
T Consensus         2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A            2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEee-eccCCHHHHHHHHHHHHHHHhh
Confidence            3699999999999999999999998899999999999999999999887 59 9999999999999999885

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.76  E-value=1.7e-18  Score=138.27  Aligned_cols=70  Identities=31%  Similarity=0.489  Sum_probs=66.0

Q ss_pred             CChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           72 LMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        72 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      .|||+.||||||++++.+|.|+++. +||+|++.|++.|+|+|..++.| .|+|||+|||+||+.||..|..
T Consensus         4 ~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G-~G~sKK~Aeq~AA~~al~~L~~   74 (76)
T 3adj_A            4 GLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGA-ATRTKKDAEISAGRTALLAIQS   74 (76)
T ss_dssp             HHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECC-CBSSHHHHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEe-ccCCHHHHHHHHHHHHHHHHhh
Confidence            5899999999999999999999987 89999999999999999999887 5999999999999999999864

>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A

Probab=99.75  E-value=1.7e-18  Score=138.31  Aligned_cols=71  Identities=31%  Similarity=0.563  Sum_probs=65.5

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      ..|||+.||||||++++.+|.|+++.+  |+|++.|+|.|.|+|+.++.|.|+|||+|||+||+.||..|...
T Consensus         3 ~~n~Kt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~   75 (76)
T 3adj_A            3 HGLCKNLLQEYAQKMNYAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQSD   75 (76)
T ss_dssp             CHHHHHHHHHHHHTTTCCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHhCCCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhhc
Confidence            358999999999999999999999764  79999999999999999999999999999999999999999643

>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A

Probab=99.75  E-value=3.4e-18  Score=135.27  Aligned_cols=69  Identities=35%  Similarity=0.531  Sum_probs=65.3

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCEEeeeeee-cCHHHHHHHHHHHHHHHHH
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAARAVIRTLL  224 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk~~~~G~G-~SKK~AKq~AA~~AL~~L~  224 (420)
                      ..|||+.||||||++++.+|.|+++.+ |+|++.|+|.|.|+|+.++.|.| +|||+|||+||+.||..|.
T Consensus         2 ~~d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~   72 (73)
T 3adg_A            2 SHVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELA   72 (73)
T ss_dssp             CCSHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence            358999999999999999999999877 79999999999999999999999 9999999999999999885

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.75  E-value=3.8e-18  Score=140.58  Aligned_cols=74  Identities=22%  Similarity=0.249  Sum_probs=66.9

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689           69 PEHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI  144 (420)
Q Consensus        69 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~  144 (420)
                      ....|||+.||||||++++.+|.|+++. +||+|++.|+|+|+|+|. ++.| .|+|||+|||+||+.||+.|...+
T Consensus        12 ~~~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~p   86 (88)
T 3adl_A           12 PRGSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG-SGTSKKLAKRNAAAKMLLRVHTVP   86 (88)
T ss_dssp             CTTCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHHC--
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEE-eeCCHHHHHHHHHHHHHHHHHccC
Confidence            3457999999999999999999999977 899999999999999997 8887 599999999999999999997654

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.74  E-value=2.8e-18  Score=134.26  Aligned_cols=67  Identities=24%  Similarity=0.297  Sum_probs=63.2

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHH
Q 014689           73 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECIS  141 (420)
Q Consensus        73 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~  141 (420)
                      +||+.||||||++++.+|.|+++. +||+|++.|+++|+|+|. ++.| .|+|||+||++||+.||..|.
T Consensus         1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G-~G~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A            1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETG-SGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEe-ecCCHHHHHHHHHHHHHHHHh
Confidence            589999999999999999999877 899999999999999998 8887 699999999999999999885

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.74  E-value=8.2e-18  Score=138.73  Aligned_cols=73  Identities=25%  Similarity=0.205  Sum_probs=66.8

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          154 QDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       154 e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      +...|||+.||||||++++.+|.|+++.+  ++|.+.|+|.|.|+|. ++.|.|+|||+|||.||+.||..|...+
T Consensus        13 ~~~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~s   87 (89)
T 2cpn_A           13 QSECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGPS   87 (89)
T ss_dssp             CCCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhhc
Confidence            34569999999999999999999999764  7999999999999997 9999999999999999999999997554

>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1

Probab=99.73  E-value=7.4e-18  Score=131.82  Aligned_cols=66  Identities=23%  Similarity=0.284  Sum_probs=62.0

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHH
Q 014689          158 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL  224 (420)
Q Consensus       158 n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~  224 (420)
                      .||+.||||||++++..|.|+++.+  |+|++.|+|.|.|+|. ++.|.|+|||+|||.||+.||..|.
T Consensus         1 ~p~s~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~   68 (69)
T 1di2_A            1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence            3799999999999999999998764  7999999999999998 9999999999999999999999985

>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.73  E-value=9e-18  Score=138.50  Aligned_cols=71  Identities=23%  Similarity=0.245  Sum_probs=66.3

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      .+|||+.||||||++++.+|.|+++. +||+|++.|+|+|+|+|. ++.| .|+|||+||++||+.||+.|...
T Consensus        15 ~~d~Kt~LqE~~Qk~~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~   86 (89)
T 2cpn_A           15 ECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIG-SGTSKKLAKRNAAAKMLLRVSGP   86 (89)
T ss_dssp             CCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHHSC
T ss_pred             CCCHHHHHHHHHHHcCCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEe-eeCCHHHHHHHHHHHHHHHHHhh
Confidence            47999999999999999999999977 899999999999999998 8887 69999999999999999999753

>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}

Probab=99.73  E-value=1.6e-17  Score=136.75  Aligned_cols=70  Identities=23%  Similarity=0.209  Sum_probs=64.7

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      ..|||+.||||||++++..|.|+++.+  |+|.+.|+|.|.|+|. ++.|.|+|||+|||+||+.||..|...
T Consensus        14 ~~d~Ks~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~   85 (88)
T 3adl_A           14 GSHEVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTV   85 (88)
T ss_dssp             TCCHHHHHHHHHHHTTCCCCEEEEEEEESCTTSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCHHHHHHHHHHHcCCCCCEEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence            469999999999999999999999765  7999999999999997 999999999999999999999999753

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.73  E-value=1.2e-17  Score=137.82  Aligned_cols=71  Identities=21%  Similarity=0.174  Sum_probs=65.9

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      .+|||+.||||||++++.+|.|+++. +||+|++.|++.|+|+|. ++.| .|+|||+|||+||+.||+.|...
T Consensus         5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~AL~~L~~~   76 (89)
T 1uhz_A            5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATG-TGPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEE-eeCCHHHHHHHHHHHHHHHHhcc
Confidence            57999999999999999999999977 899999999999999996 8887 59999999999999999999753

>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.72  E-value=2.4e-17  Score=135.90  Aligned_cols=70  Identities=20%  Similarity=0.083  Sum_probs=65.0

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      ..|||+.||||||++++..|.|+++.+  ++|++.|+|.|.|+|+ ++.|.|+|||+|||+||+.||..|...
T Consensus         5 ~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~   76 (89)
T 1uhz_A            5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CCCHHHHHHHHHHHhCCCCCeEEEEEeECCCCCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhcc
Confidence            569999999999999999999999764  7999999999999996 899999999999999999999999643

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.72  E-value=1.2e-17  Score=141.20  Aligned_cols=78  Identities=41%  Similarity=0.543  Sum_probs=66.6

Q ss_pred             CCCCCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCcc-ccchHHHHHHHHHHHHHHHhcccC
Q 014689           68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTF-SHRKAAEQDVAKIALECISKKIKD  146 (420)
Q Consensus        68 l~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~G-sSKKeAEq~AAk~AL~~L~~~~~~  146 (420)
                      +...+|||+.||||||++++.+|.|+++.+||+|++.|++.|+|+|..++.| .| +|||+|||+||+.||+.|......
T Consensus        13 ~~~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G-~G~~SKK~Aeq~AA~~AL~~L~~~~~~   91 (103)
T 2l2n_A           13 VSNCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSL-PGFFNRKAAEQSAAEVALRELAKSSEL   91 (103)
T ss_dssp             ------CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECC-SCBSSHHHHHHHHHHHHHHHHHHHC--
T ss_pred             cCCCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEe-ecCCCHHHHHHHHHHHHHHHHhccccc
Confidence            4556899999999999999999999999899999999999999999999987 59 899999999999999999876543

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.72  E-value=2.6e-17  Score=134.06  Aligned_cols=71  Identities=20%  Similarity=0.278  Sum_probs=65.1

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      ..+|||+.||||||+++ ..|.|+++. +||+|++.|+|.|+|+| .++.| .|+|||+|||+||+.||+.|...
T Consensus         6 ~~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G-~G~SKK~Aeq~AA~~aL~~L~~~   77 (84)
T 2dix_A            6 SGKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTG-EGTSKKLAKHRAAEAAINILKAN   77 (84)
T ss_dssp             CCCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEE-CSSCTTHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEe-eeCCHHHHHHHHHHHHHHHHhcc
Confidence            45899999999999998 689999977 89999999999999999 88887 59999999999999999999754

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.71  E-value=6.6e-18  Score=138.18  Aligned_cols=70  Identities=23%  Similarity=0.196  Sum_probs=63.9

Q ss_pred             CChHHHHHHHHHH-----cCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           72 LMHKNRLQEHAQR-----SGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        72 ~npKS~LQE~cQK-----~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      +|||+.||||||+     +++.+|.|+++. +||+|++.|++.|+|+|..++.| .|+|||+|||+||+.||+.|..
T Consensus         1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G-~G~SKK~AEq~AA~~AL~~L~~   76 (85)
T 2khx_A            1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCG-KGPSIQQAEMGAAMDALEKYNF   76 (85)
T ss_dssp             CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCE-EESSHHHHHHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHhH
Confidence            5899999999998     467789999987 89999999999999999999887 5999999999999999988754

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.71  E-value=8.2e-18  Score=134.05  Aligned_cols=69  Identities=16%  Similarity=0.168  Sum_probs=64.3

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      ..|||+.||||||++++. |.|+++. +||+|++.|+|+|+|+| .++.| .|+|||+|||+||+.||..|..
T Consensus         6 ~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G-~G~sKK~Aeq~AA~~aL~~L~~   75 (76)
T 1ekz_A            6 KKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEG-EGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEE-CCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEE-eeCCHHHHHHHHHHHHHHHHhh
Confidence            579999999999999998 9999977 89999999999999999 88887 5999999999999999999864

>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}

Probab=99.70  E-value=1.9e-17  Score=135.45  Aligned_cols=69  Identities=22%  Similarity=0.222  Sum_probs=63.0

Q ss_pred             CChhHHHHHHHHH-----cCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689          157 VFCKSILNEFAVK-----MNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       157 ~n~Ks~LqE~cQk-----~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~  225 (420)
                      .|||+.||||||+     +++..|.|+++.+  |+|++.|+|.|.|+|+.++.|.|+|||+|||+||+.||..|..
T Consensus         1 ~d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~   76 (85)
T 2khx_A            1 NDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNF   76 (85)
T ss_dssp             CCSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCS
T ss_pred             CCHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhH
Confidence            3899999999998     4678899999765  7999999999999999999999999999999999999998754

>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}

Probab=99.70  E-value=4e-17  Score=137.97  Aligned_cols=74  Identities=34%  Similarity=0.505  Sum_probs=66.1

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCEEeeeeee-cCHHHHHHHHHHHHHHHHHhhcC
Q 014689          155 DTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAARAVIRTLLVTSG  228 (420)
Q Consensus       155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk~~~~G~G-~SKK~AKq~AA~~AL~~L~~~s~  228 (420)
                      ...|||+.||||||++++.+|.|+++.+ |+|++.|+|.|.|+|+.++.|.| +|||+|||+||+.||..|.....
T Consensus        15 ~~~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~~   90 (103)
T 2l2n_A           15 NCYVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSSE   90 (103)
T ss_dssp             ----CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC-
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhcccc
Confidence            3469999999999999999999999887 79999999999999999999999 99999999999999999987654

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.70  E-value=2.8e-17  Score=135.53  Aligned_cols=73  Identities=29%  Similarity=0.338  Sum_probs=58.0

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689           69 PEHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI  144 (420)
Q Consensus        69 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~  144 (420)
                      ...+|||+.||||||+++. .|.|+++. +||+|++.|+++|+|+|. ++.| .|+|||+|||+||+.||+.|....
T Consensus        11 ~~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G-~G~SKK~Aeq~AA~~aL~~L~~~~   84 (90)
T 3llh_A           11 NPGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTG-QGPSKKAAKHKAAEVALKHLKGGS   84 (90)
T ss_dssp             --CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHC---
T ss_pred             ccCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEE-EeCCHHHHHHHHHHHHHHHHHhcc
Confidence            4468999999999999985 79999876 899999999999999997 5676 699999999999999999997654

>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.69  E-value=6.1e-17  Score=131.90  Aligned_cols=70  Identities=26%  Similarity=0.357  Sum_probs=64.0

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      ..|||+.||||||+++ ..|.|+++.+  |+|++.|+|.|.|+| .++.|.|+|||+|||+||+.||..|....
T Consensus         7 ~~d~Ks~LqE~~q~~~-~~p~Y~~~~~~Gp~h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~~   78 (84)
T 2dix_A            7 GKTPIQVLHEYGMKTK-NIPVYECERSDVQIHVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKANA   78 (84)
T ss_dssp             CCCHHHHHHHHHHHTT-CCCEEEEEEEECSSSSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHcC-CCCeEEEEEeECCCCCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhccc
Confidence            4699999999999998 6899999765  799999999999999 88999999999999999999999997543

>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A

Probab=99.69  E-value=1.2e-17  Score=133.01  Aligned_cols=69  Identities=20%  Similarity=0.252  Sum_probs=63.7

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689          155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~  225 (420)
                      ...|||+.||||||++++. |.|+++.+  |+|.+.|+|+|.|+| .++.|.|+|||+|||.||+.||..|..
T Consensus         5 ~~~d~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~   75 (76)
T 1ekz_A            5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHHcCCC-CEEEEEEeECCCCCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence            3569999999999999999 99999765  799999999999999 889999999999999999999999853

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.68  E-value=5.7e-17  Score=128.37  Aligned_cols=68  Identities=28%  Similarity=0.323  Sum_probs=62.2

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      ..|||+.||||||+  +..|.|+++. +||+|+++|+++|.|+|..+ .| .|+|||+|||+||+.||+.|..
T Consensus         3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~al~~L~~   71 (73)
T 2b7t_A            3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG-SGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EE-EESSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-Ee-ecCCHHHHHHHHHHHHHHHHhc
Confidence            47999999999996  6789999977 89999999999999999887 66 6999999999999999999875

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.68  E-value=4.4e-17  Score=136.40  Aligned_cols=73  Identities=18%  Similarity=0.289  Sum_probs=66.6

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI  144 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~  144 (420)
                      ...|||+.||||||++++. |.|+++. +||+|++.|++.|+|+|..++.| .|+|||+|||+||+.||+.|....
T Consensus        12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~   85 (97)
T 1x49_A           12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEA-KGRSKQEARNAAAKLAVDILDNEN   85 (97)
T ss_dssp             CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCE-EESSHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHHhhc
Confidence            3579999999999999996 7999876 89999999999999999999887 599999999999999999997544

>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.68  E-value=4.9e-17  Score=136.14  Aligned_cols=73  Identities=19%  Similarity=0.233  Sum_probs=66.1

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689          155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  228 (420)
Q Consensus       155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s~  228 (420)
                      ...|||+.||||||++++. |.|+++.+  |+|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||..|.....
T Consensus        12 ~~~n~Kt~LqE~~Q~~~~~-p~Y~~~~~~Gp~H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~   86 (97)
T 1x49_A           12 TPGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK   86 (97)
T ss_dssp             CTTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCCHHHHHHHHHHHcCCC-CeEEEEEeeCCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhcC
Confidence            3468999999999999997 79998764  7999999999999999999999999999999999999999976543

>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}

Probab=99.68  E-value=1.1e-16  Score=131.99  Aligned_cols=71  Identities=24%  Similarity=0.286  Sum_probs=58.1

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      ...|||+.||||||+++. .|.|+++.+  ++|++.|+|+|.|+|+ ++.|.|+|||+|||.||+.||..|...+
T Consensus        12 ~~kd~Ks~LqE~~q~~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~~   84 (90)
T 3llh_A           12 PGKTPISLLQEYGTRIGK-TPVYDLLKAEGQAHQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGGS   84 (90)
T ss_dssp             -CCCHHHHHHHHHHHTTC-CCEEEEEEEC-----CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC---
T ss_pred             cCCCHHHHHHHHHHhcCC-CCEEEEEEeECCCCCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhcc
Confidence            356999999999999985 699998654  7999999999999997 6889999999999999999999997665

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.67  E-value=1.3e-16  Score=131.14  Aligned_cols=73  Identities=18%  Similarity=0.171  Sum_probs=66.0

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEeccCCCCCC-eEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhccc
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAP-KFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIK  145 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p-~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~  145 (420)
                      ...|||+.||||||++++.+ .|+ ..+||+|++ +|++.|+|+|..++.| .|+|||+|||+||+.||+.|....+
T Consensus         4 ~~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~~   77 (88)
T 1x48_A            4 GSSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTG-SGVTKQEAKQLAAKEAYQKLLKSPP   77 (88)
T ss_dssp             SSSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEE-EESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEe-ecCCHHHHHHHHHHHHHHHHHhcCC
Confidence            35799999999999999976 999 668999999 7999999999999887 5999999999999999999987543

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.67  E-value=6.3e-17  Score=136.01  Aligned_cols=73  Identities=19%  Similarity=0.194  Sum_probs=66.5

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECC-EEeecCCccccchHHHHHHHHHHHHHHHhccc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDG-VTYTSPNTFSHRKAAEQDVAKIALECISKKIK  145 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G-~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~  145 (420)
                      ..|||+.||||||++ +..|.|++..+||+|+++|+|+|+|+| ..++.| .|+|||+|||+||+.||+.|.....
T Consensus         5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~~   78 (99)
T 1whq_A            5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMG-NSTNKKDAQSNAARDFVNYLVRINE   78 (99)
T ss_dssp             CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEE-EESSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEe-ccCCHHHHHHHHHHHHHHHHHhhCC
Confidence            479999999999999 888999995589999999999999999 688887 5999999999999999999987554

>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A

Probab=99.66  E-value=2e-16  Score=125.21  Aligned_cols=67  Identities=25%  Similarity=0.308  Sum_probs=60.9

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~  225 (420)
                      ..|||+.||||||+  +..|.|+++.+  |+|+++|+|+|.|+|..+ .|.|+|||+|||+||+.||..|..
T Consensus         3 ~~d~Ks~Lqe~~q~--~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~   71 (73)
T 2b7t_A            3 PVLPKNALMQLNEI--KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSSSHHHHHHHHHH--CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHcC--CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence            35899999999996  67899999764  799999999999999887 899999999999999999999864

>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A

Probab=99.66  E-value=1.3e-16  Score=134.00  Aligned_cols=70  Identities=23%  Similarity=0.203  Sum_probs=63.7

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECC-EEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNG-VTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~G-k~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      ..|||+.||||||++ +..|.|++... ++|.++|+|.|.|+| +.++.|.|+|||+|||+||+.||..|...
T Consensus         5 ~~d~Kt~LqE~~Qk~-~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~   76 (99)
T 1whq_A            5 SSGIKNFLYAWCGKR-KMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRI   76 (99)
T ss_dssp             CCSSHHHHHHHHHHT-TCCCEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHC-CCCCeEEEeeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence            459999999999999 88899999434 789999999999999 78999999999999999999999999754

>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.66  E-value=2.8e-16  Score=129.24  Aligned_cols=71  Identities=28%  Similarity=0.404  Sum_probs=64.1

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCC-eEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLP-VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  228 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~-~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s~  228 (420)
                      ..|||+.||||||++++.+ .|+ ... |+|++ +|+|.|.|+|+.++.|.|+|||+|||.||+.||..|....+
T Consensus         5 ~~d~Kt~LqE~~Q~~~~~~-~Y~-~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~   77 (88)
T 1x48_A            5 SSGYIGLVNSFAQKKKLSV-NYE-QCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPP   77 (88)
T ss_dssp             SSCHHHHHHHHHHHTTCCE-EEE-ECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred             CCCHHHHHHHHHHHcCCCC-eeE-EeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCC
Confidence            3589999999999999986 999 444 79999 79999999999999999999999999999999999987643

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.65  E-value=5.1e-16  Score=130.12  Aligned_cols=72  Identities=28%  Similarity=0.330  Sum_probs=65.3

Q ss_pred             CCCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          154 QDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       154 e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      .+..|||+.||||||++++..|.|+++.+ ++. +.|+|.|.|+|+.++.|.|+|||+|||+||+.||..|...
T Consensus        13 ~~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~-~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~   85 (98)
T 1x47_A           13 PNGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD   85 (98)
T ss_dssp             TTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS-CCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC-CcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence            35679999999999999999999999875 434 9999999999999999999999999999999999999743

>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.64  E-value=5.4e-16  Score=129.95  Aligned_cols=73  Identities=34%  Similarity=0.347  Sum_probs=66.6

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhccc
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIK  145 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~  145 (420)
                      ..+|||+.||||||++++.+|.|+++. +||+  +.|++.|+|+|..|+.| .|+|||+|||+||+.||..|.....
T Consensus        14 ~~kd~Kt~LqE~~Q~~~~~~P~Y~~~~~~Gp~--~~F~~~V~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~~~   87 (98)
T 1x47_A           14 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS--EPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIPDFV   87 (98)
T ss_dssp             TCCCHHHHHHHHHHHHTCSCCEEEEEECSSSS--CCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHCSSSS
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEEeECCC--CcEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHhhhh
Confidence            468999999999999999999999987 7987  99999999999999887 5999999999999999999975443

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.63  E-value=1e-16  Score=134.03  Aligned_cols=70  Identities=14%  Similarity=-0.021  Sum_probs=63.9

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCE-EeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGV-TYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~-~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      ..|||+.||||+|+++ ..|.|+++.+||+|++.|++.|+|+|. .++.| .|+|||+|||+||+.||+.|..
T Consensus         5 ~~D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G-~G~SKK~AEQ~AA~~AL~~l~~   75 (94)
T 1t4n_A            5 DMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDKKM   75 (94)
T ss_dssp             CHHHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEE-EESSHHHHHHHHHHHHHHCHHH
T ss_pred             CCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEE-EeCCHHHHHHHHHHHHHHHHHH
Confidence            4699999999999975 589999988999999999999999998 88887 5999999999999999987764

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.63  E-value=4.9e-16  Score=136.37  Aligned_cols=69  Identities=29%  Similarity=0.291  Sum_probs=65.8

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeecCCCCCeEEEEEEECCEEeeeeee-cCHHHHHHHHHHHHHHHHHh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~p~H~~~F~~~V~I~Gk~~~~G~G-~SKK~AKq~AA~~AL~~L~~  225 (420)
                      ..|||+.||||||++++.+|.|+++.+ +|++.|+|.|.|+|+.|+.|.| +|||+|||+||+.||..|..
T Consensus        25 ~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~-~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~   94 (128)
T 1whn_A           25 QITPKMCLLEWCRREKLPQPVYETVQR-TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGL   94 (128)
T ss_dssp             TCCHHHHHHHHHHHTTCCCCCCCEEEC-SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHcCCCCCeEEEEee-cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhc
Confidence            469999999999999999999999988 9999999999999999999999 99999999999999999963

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.63  E-value=4.1e-16  Score=130.36  Aligned_cols=70  Identities=31%  Similarity=0.360  Sum_probs=63.8

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           69 PEHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        69 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      ...+|||+.||||||++  .+|.|+++. +||+|++.|++.|+|+|..+ .| .|+|||+|||+||+.||+.|..
T Consensus        13 ~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~aL~~L~~   83 (97)
T 2dmy_A           13 SKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EA-SGPSKKTAKLHVAVKVLQAMGY   83 (97)
T ss_dssp             CCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EE-eeCCHHHHHHHHHHHHHHHhCC
Confidence            34589999999999996  679999987 89999999999999999988 66 6999999999999999999964

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.63  E-value=5.5e-16  Score=133.11  Aligned_cols=75  Identities=21%  Similarity=0.148  Sum_probs=67.1

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEE-----CCEEeecCCccccchHHHHHHHHHHHHHHHhccc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSV-----DGVTYTSPNTFSHRKAAEQDVAKIALECISKKIK  145 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V-----~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~  145 (420)
                      ..|||+.||||||++++ .|.|++..+||+|++.|++.|+|     +|..++.| .|+|||+|||+||+.||+.|....-
T Consensus        25 ~~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G-~G~SKK~AEq~AA~~AL~~L~~~~~  102 (113)
T 1uil_A           25 LENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFARE-HGSNKKLAAQSCALSLVRQLYHLGV  102 (113)
T ss_dssp             HHHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEEC-CCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             cCCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEE-eeCCHHHHHHHHHHHHHHHHHhcCC
Confidence            46999999999999999 89999655899999999999999     68888887 5999999999999999999987654


Q ss_pred             CC
Q 014689          146 DE  147 (420)
Q Consensus       146 ~E  147 (420)
                      .+
T Consensus       103 ie  104 (113)
T 1uil_A          103 IE  104 (113)
T ss_dssp             SC
T ss_pred             cc
Confidence            43

>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1

Probab=99.63  E-value=1.1e-15  Score=127.73  Aligned_cols=70  Identities=23%  Similarity=0.232  Sum_probs=63.0

Q ss_pred             CCCCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689          153 NQDTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       153 ~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~  225 (420)
                      +....|||+.||||||++  ..|.|+++.+  ++|++.|++.|.|+|+.+ .|.|+|||+|||+||+.||..|..
T Consensus        12 ~~~~~d~Kt~LqE~~Q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~   83 (97)
T 2dmy_A           12 DSKAIDLMNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGY   83 (97)
T ss_dssp             CCCSSSCTHHHHHHHHHS--CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTC
T ss_pred             cCCCCCHHHHHHHHHhcC--CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCC
Confidence            344579999999999996  6789999864  799999999999999988 899999999999999999999964

>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A

Probab=99.62  E-value=8.3e-16  Score=132.00  Aligned_cols=69  Identities=23%  Similarity=0.267  Sum_probs=62.5

Q ss_pred             CChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEE-----CCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          157 VFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVF-----NGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       157 ~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I-----~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      .|||+.||||||++++ .|.|++... |+|++.|+|.|.|     +|+.++.|.|+|||+|||.||+.||..|...
T Consensus        26 ~d~Kt~LqE~~Qk~~~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~  100 (113)
T 1uil_A           26 ENAKARLNQYFQKEKI-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL  100 (113)
T ss_dssp             HHHHHHHHHHHHHSCC-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHCCC-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence            3899999999999999 899995444 7999999999999     6888999999999999999999999999754

>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1

Probab=99.62  E-value=3.2e-16  Score=131.01  Aligned_cols=70  Identities=19%  Similarity=0.052  Sum_probs=63.3

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCE-EeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGV-TYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk-~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      ..|||+.||||+|+++ ..|.|+++.+ |+|++.|++.|.|+|. .+++|.|+|||+|||.||+.||..|.-.
T Consensus         5 ~~D~KT~LQE~~Q~~~-~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l   76 (94)
T 1t4n_A            5 DMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML   76 (94)
T ss_dssp             CHHHHHHHHHHTCSSS-SCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred             CCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence            4589999999999974 5799999776 7999999999999998 8999999999999999999999987543

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.62  E-value=3.3e-16  Score=135.56  Aligned_cols=73  Identities=14%  Similarity=-0.059  Sum_probs=65.5

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCE-EeecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGV-TYTSPNTFSHRKAAEQDVAKIALECISKKI  144 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~-~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~  144 (420)
                      ...|||+.||||||+.+ .+|.|.++.+||+|++.|++.|+|+|. .++.| .|+|||+|||+||+.||..+....
T Consensus         6 ~~~D~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G-~G~SKK~AEQ~AA~~AL~~l~~l~   79 (117)
T 1t4o_A            6 LDMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDKKMLD   79 (117)
T ss_dssp             CCTTHHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEE-EESSHHHHHHHHHHHHHHCHHHHH
T ss_pred             CCCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEE-EeCCHHHHHHHHHHHHHHHHHHHH
Confidence            35799999999999954 689999988899999999999999998 88887 599999999999999998876544

>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1

Probab=99.61  E-value=9.6e-16  Score=134.50  Aligned_cols=74  Identities=27%  Similarity=0.367  Sum_probs=67.4

Q ss_pred             CCCCCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCcc-ccchHHHHHHHHHHHHHHHhcc
Q 014689           68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTF-SHRKAAEQDVAKIALECISKKI  144 (420)
Q Consensus        68 l~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~G-sSKKeAEq~AAk~AL~~L~~~~  144 (420)
                      .....|||+.||||||++++.+|.|+++.+  +|++.|++.|+|+|..|+.| .| +|||+|||+||+.||+.|....
T Consensus        22 ~~~~~d~Kt~LQE~~Qk~~~~~P~Y~~v~~--~H~~~F~v~V~v~g~~~g~G-~G~~SKK~AEQ~AA~~AL~~L~~~~   96 (128)
T 1whn_A           22 YPPQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQST-LWDKSKKLAEQTAAIVCLRSQGLPE   96 (128)
T ss_dssp             SCTTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEES-SCBSSHHHHHHHHHHHHHHHHTCSS
T ss_pred             cccCCCHHHHHHHHHHHcCCCCCeEEEEee--cCCCcEEEEEEECCEEEEEE-eccCCHHHHHHHHHHHHHHHHhccc
Confidence            345689999999999999999999999887  89999999999999999887 59 9999999999999999997543

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.61  E-value=1.3e-15  Score=126.43  Aligned_cols=69  Identities=23%  Similarity=0.214  Sum_probs=62.7

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      ..++|+.||||||+++  .|.|+++.+  |+|+++|+|+|.|+|+.+ .|.|+|||+|||+||+.||..|....
T Consensus        13 ~~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~   83 (91)
T 2l33_A           13 TKHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDT   83 (91)
T ss_dssp             CSSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCC
T ss_pred             ccCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHhhcC
Confidence            3589999999999998  789999765  899999999999999887 89999999999999999999997554

>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}

Probab=99.60  E-value=6.9e-16  Score=128.09  Aligned_cols=69  Identities=26%  Similarity=0.245  Sum_probs=62.9

Q ss_pred             CChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689           72 LMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI  144 (420)
Q Consensus        72 ~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~  144 (420)
                      .++|+.||||||+++  .|.|+++. +||+|+++|+++|.|+|..+ .| .|+|||+|||+||+.||+.|....
T Consensus        14 ~~~K~~LqEl~Qk~~--~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~~-~G-~G~SKK~AEq~AA~~AL~~L~~~~   83 (91)
T 2l33_A           14 KHGKNPVMELNEKRR--GLKYELISETGGSHDKRFVMEVEVDGQKF-QG-AGSNKKVAKAYAALAALEKLFPDT   83 (91)
T ss_dssp             SSTTCHHHHHHHHCS--SCEEEEEEEEECSSCEEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHCCCC
T ss_pred             cCCCCHHHHHHHhCC--CCeEEEEEeeCCCCCCeEEEEEEECCEEE-Ee-eeCCHHHHHHHHHHHHHHHHhhcC
Confidence            589999999999998  78999877 89999999999999999887 66 699999999999999999997543

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.58  E-value=2e-15  Score=130.12  Aligned_cols=71  Identities=28%  Similarity=0.334  Sum_probs=63.2

Q ss_pred             CCCCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhccc
Q 014689           68 VPEHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIK  145 (420)
Q Consensus        68 l~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~  145 (420)
                      ....+|||+.||||||+     |.|+++. +||+|+++|+++|+|+|..| .| .|+|||+|||+||+.||+.|.....
T Consensus        33 ~~~~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G-~G~SKK~AEq~AA~~AL~~L~~~~~  104 (114)
T 2ljh_A           33 IPQPKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LG-QGRSKKVARIEAAATALRSFIQFKD  104 (114)
T ss_dssp             CCCCSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHCCCTT
T ss_pred             CCCCCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-Ee-eeCCHHHHHHHHHHHHHHHHHcCCC
Confidence            34568999999999984     8999977 89999999999999999999 66 6999999999999999999986543

>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B

Probab=99.57  E-value=2.3e-15  Score=130.25  Aligned_cols=69  Identities=19%  Similarity=0.059  Sum_probs=62.8

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCE-EeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGV-TYTGEPGRSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk-~~~~G~G~SKK~AKq~AA~~AL~~L~~  225 (420)
                      ..|||+.||||||+.+ ..|.|.++.+ |+|++.|++.|.|+|. .++.|.|+|||+|||.||+.||..|.-
T Consensus         7 ~~D~KT~LQE~~Q~~~-~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~   77 (117)
T 1t4o_A            7 DMNAKRQLYSLIGYAS-LRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKM   77 (117)
T ss_dssp             CTTHHHHHHHHHCCGG-GCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred             CCCchHHHHHHHcCCC-CCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence            4699999999999954 6799999877 7999999999999998 899999999999999999999987754

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.55  E-value=9.2e-15  Score=114.94  Aligned_cols=66  Identities=27%  Similarity=0.222  Sum_probs=59.4

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      .+||++.|||||     ..|.|+++. +||+|++.|+++|.|+|..+ .| .|+|||+|||+||+.||+.|...
T Consensus         3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G-~G~SKK~Aeq~AA~~al~~L~~~   69 (71)
T 2b7v_A            3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EG-SGRNKKLAKARAAQSALATVFNL   69 (71)
T ss_dssp             SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EE-EESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EE-eeCCHHHHHHHHHHHHHHHHHhc
Confidence            589999999994     578999877 89999999999999999876 65 69999999999999999998753

>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}

Probab=99.54  E-value=9.4e-15  Score=125.97  Aligned_cols=66  Identities=27%  Similarity=0.330  Sum_probs=60.0

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      ..|||+.||||||+     |.|+++.+  ++|+++|+|+|.|+|+.+ .|.|+|||+|||+||+.||..|....
T Consensus        36 ~kd~Ks~LQE~~q~-----p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~  103 (114)
T 2ljh_A           36 PKNTVAMLNELRHG-----LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFK  103 (114)
T ss_dssp             CSCHHHHHHHHCSC-----CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCT
T ss_pred             CCCHHHHHHHHccC-----CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCC
Confidence            46999999999984     89999765  799999999999999999 99999999999999999999997543

>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B

Probab=99.53  E-value=2.9e-14  Score=112.08  Aligned_cols=65  Identities=29%  Similarity=0.291  Sum_probs=58.4

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      ..|+++.|||||     ..|.|+++.+  ++|++.|+|+|.|+|+.+ .|.|+|||+|||.||+.||..|...
T Consensus         3 ~knp~s~L~E~~-----~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G~G~SKK~Aeq~AA~~al~~L~~~   69 (71)
T 2b7v_A            3 GKNPVMILNELR-----PGLKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFNL   69 (71)
T ss_dssp             SSCHHHHHHHHC-----CSCEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHhC-----CCCEEEEEEeECCCCCceEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHHHhc
Confidence            468999999994     6789998765  799999999999999876 8999999999999999999999753

>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1

Probab=99.52  E-value=1.2e-14  Score=132.68  Aligned_cols=69  Identities=25%  Similarity=0.301  Sum_probs=64.3

Q ss_pred             CChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          157 VFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       157 ~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      .|||+.||||||++++. |.|+++.+  |+|.+.|+|.|.|+|+.++.|.|+|||+|||+||+.||..|...
T Consensus        13 ~n~ks~LqE~~q~~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~   83 (179)
T 1qu6_A           13 GFFMEELNTYRQKQGVV-LKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKE   83 (179)
T ss_dssp             CSHHHHHHHHHHHHTCC-CEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSC
T ss_pred             CCHHHHHHHHHHhCCCC-CeEEEeeccCCCCCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcc
Confidence            58999999999999997 89999765  79999999999999988999999999999999999999999754

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.45  E-value=2.1e-13  Score=108.70  Aligned_cols=66  Identities=23%  Similarity=0.220  Sum_probs=55.5

Q ss_pred             hhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          159 CKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       159 ~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      .|+.|++|+|.+  ..|.|+++.+  ++|+++|++.|.|+|+.+ .|.|+|||+|||+||+.||..|..+.
T Consensus         6 ~K~pl~~L~q~~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~~   73 (75)
T 3p1x_A            6 GKNPVMELNEKR--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDT   73 (75)
T ss_dssp             CCCHHHHHHHHS--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHccC
Confidence            344555555554  4689999865  799999999999999988 89999999999999999999997664

>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}

Probab=99.44  E-value=1.1e-13  Score=110.35  Aligned_cols=67  Identities=25%  Similarity=0.206  Sum_probs=56.5

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI  144 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~  144 (420)
                      .+|+++.|+|+   +  ..|.|+++. +||+|++.|++.|.|+|..+ .| .|+|||+|||+||+.||+.|....
T Consensus         6 ~K~pl~~L~q~---~--~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G-~G~SKK~Aeq~AA~~al~~L~~~~   73 (75)
T 3p1x_A            6 GKNPVMELNEK---R--RGLKYELISETGGSHDKRFVMEVEVDGQKF-QG-AGSNKKVAKAYAALAALEKLFPDT   73 (75)
T ss_dssp             CCCHHHHHHHH---S--TTCCEEEEEEESCTTSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHCTTC
T ss_pred             CCCHHHHHHHc---C--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-EE-EECCHHHHHHHHHHHHHHHHHccC
Confidence            45665555555   3  478999987 89999999999999999988 66 699999999999999999997643

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.44  E-value=1.1e-13  Score=129.52  Aligned_cols=70  Identities=26%  Similarity=0.222  Sum_probs=65.1

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      ..|||+.||||||++++..|.|+++. +||+|.+.|+|.|+|+|. ++.| .|+|||+||++||+.||+.|..
T Consensus       149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G-~G~skK~Ae~~AA~~AL~~L~~  219 (221)
T 2nug_A          149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLG-EGKSKKEAEQRAAEELIKLLEE  219 (221)
T ss_dssp             CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEE-EESSHHHHHHHHHHHHHHHHC-
T ss_pred             ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEE-ecCCHHHHHHHHHHHHHHHhhc
Confidence            47999999999999999999999877 899999999999999999 9887 5999999999999999999863

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.43  E-value=1.7e-13  Score=131.11  Aligned_cols=73  Identities=29%  Similarity=0.239  Sum_probs=66.5

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      ...|||+.||||||++++..|.|+++. +||+|++.|+|.|+|+|..++.| .|+|||+||++||+.||+.|..+
T Consensus       177 ~~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~~  250 (252)
T 1o0w_A          177 MLFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATG-KGRTKKEAEKEAARIAYEKLLKE  250 (252)
T ss_dssp             CCSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHC--
T ss_pred             cccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEE-eeCCHHHHHHHHHHHHHHHHhhc
Confidence            357999999999999999999999987 89999999999999999999887 59999999999999999998653

>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}

Probab=99.43  E-value=4.3e-13  Score=127.60  Aligned_cols=71  Identities=28%  Similarity=0.335  Sum_probs=64.9

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          155 DTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      ...|||+.||||||++++..|.|+++.. ++. +.|+|.|.|+|..|+.|.|+|||+||++||+.||..|...
T Consensus        20 ~~kd~ks~LqE~~q~~~~~~p~Y~~~~~~Gp~-~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~   91 (232)
T 2yt4_A           20 NGKSEVCILHEYMQRVLKVRPVYNFFECENPS-EPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD   91 (232)
T ss_dssp             TTSCHHHHHHHHHHHTTCCCCEEEEEECSCTT-SCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred             CCCCHHHHHHHHHHHcCCCCCeEEEEeeECCC-CcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence            4569999999999999999999999875 444 9999999999999999999999999999999999999764

>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A

Probab=99.42  E-value=2.2e-13  Score=127.59  Aligned_cols=68  Identities=32%  Similarity=0.265  Sum_probs=63.9

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHH
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL  224 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~  224 (420)
                      ..|||+.||||||++++..|.|+++.+  ++|.+.|+|.|.|+|+ ++.|.|+|||+||+.||+.||..|.
T Consensus       149 ~~~pks~LqE~~q~~~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~skK~Ae~~AA~~AL~~L~  218 (221)
T 2nug_A          149 KKDYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE  218 (221)
T ss_dssp             CCCHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             ccCHHHHHHHHHHHcCCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhh
Confidence            469999999999999999999998765  7899999999999999 9999999999999999999999986

>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1

Probab=99.42  E-value=3e-13  Score=129.38  Aligned_cols=71  Identities=31%  Similarity=0.315  Sum_probs=64.9

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      ..|||+.||||||++++..|.|+++.+  ++|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||..|...
T Consensus       178 ~~dpkt~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~  250 (252)
T 1o0w_A          178 LFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKLLKE  250 (252)
T ss_dssp             CSCHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred             ccCHHHHHHHHHHHcCCCCceEEEEeeeCCCCCCeEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhhc
Confidence            469999999999999999999999764  78999999999999999999999999999999999999999643

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=99.35  E-value=7.1e-14  Score=133.94  Aligned_cols=72  Identities=29%  Similarity=0.288  Sum_probs=0.0

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      ..+|||+.||||||++++.+|.|+++. +||+|++.|+|.|+|+|..++.| .|+|||+||++||+.||+.|..
T Consensus       175 ~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~SKK~Aeq~AA~~AL~~L~~  247 (248)
T 3n3w_A          175 LIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARA-IAGSKKEAQQMAAKIALEKLGA  247 (248)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             cccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHHc
Confidence            458999999999999999999999987 89999999999999999999887 5999999999999999998864

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.33  E-value=1e-13  Score=131.57  Aligned_cols=73  Identities=30%  Similarity=0.303  Sum_probs=0.0

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI  144 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~  144 (420)
                      ..|||+.||||||++++..|.|++..+||+|.+.|+|.|+|+|..++.| .|+|||+||++||+.||+.|....
T Consensus       161 ~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G-~G~skk~Ae~~AA~~AL~~L~~~~  233 (242)
T 2a11_A          161 GLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSG-VGRSKKEAEQKAAAAAWKALEVLD  233 (242)
T ss_dssp             --------------------------------------------------------------------------
T ss_pred             cCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEe-eeCCHHHHHHHHHHHHHHHHhhcc
Confidence            5799999999999999999999998899999999999999999988887 599999999999999999997654

>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}

Probab=99.30  E-value=2.3e-13  Score=130.37  Aligned_cols=70  Identities=27%  Similarity=0.283  Sum_probs=0.0

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~  225 (420)
                      ..|||+.||||||++++..|.|+++.+  ++|.+.|+|.|.|+|+.++.|.|+|||+|||.||+.||+.|..
T Consensus       176 ~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~  247 (248)
T 3n3w_A          176 IKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSKKEAQQMAAKIALEKLGA  247 (248)
T ss_dssp             ------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHc
Confidence            469999999999999999999999765  7899999999999999999999999999999999999998864

>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}

Probab=99.27  E-value=4e-13  Score=127.45  Aligned_cols=72  Identities=32%  Similarity=0.334  Sum_probs=0.0

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      ..|||+.||||||++++..|.|++... ++|.+.|+|.|.|+|+.++.|.|+|||+||+.||+.||..|....
T Consensus       161 ~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~skk~Ae~~AA~~AL~~L~~~~  233 (242)
T 2a11_A          161 GLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGRSKKEAEQKAAAAAWKALEVLD  233 (242)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             cCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHhhcc
Confidence            468999999999999999999998776 789999999999999989999999999999999999999997553

>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}

Probab=99.23  E-value=1.5e-11  Score=117.05  Aligned_cols=68  Identities=26%  Similarity=0.197  Sum_probs=60.6

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI  144 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~  144 (420)
                      ...|||+.||||     +..|.|+++. +||+|++.|+++|+|+|..+ .| .|+|||+|||+||+.||+.|....
T Consensus       159 ~~~d~ks~LqE~-----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~~~-~G-~G~sKK~Aeq~AA~~al~~L~~~~  227 (236)
T 2l3j_A          159 SGKNPVMILNEL-----RPGLKYDFLSESGESHAKSFVMSVVVDGQFF-EG-SGRNKKLAKARAAQSALATVFNLH  227 (236)
T ss_dssp             SSCCHHHHHHHH-----CCCEEEEEECCSSSSSSCCEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCCHHHHHHhc-----CCCCcEEEEEeeCCCCCCeEEEEEEECCEEE-Ee-eeCCHHHHHHHHHHHHHHHHcccc
Confidence            457999999999     4678999877 89999999999999999986 66 699999999999999999997543

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=98.89  E-value=1.6e-10  Score=115.82  Aligned_cols=68  Identities=21%  Similarity=0.110  Sum_probs=0.0

Q ss_pred             CCChHHHHHHHHHHcCCCC-CeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689           71 HLMHKNRLQEHAQRSGIPL-PVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI  144 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~l-P~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~  144 (420)
                      ..|||+.||||||++++.. |.|++.. +||     |++.|+|+|..++.| .|+|||+|||.||+.||+.|....
T Consensus       253 ~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~Gp-----F~v~v~i~~~~~g~G-~G~SKK~AEq~AA~~AL~~L~~~~  322 (341)
T 3rv0_A          253 NKNAKNELAELLQINKLGHKLHYRKLTEMPP-----FRVEVKIGDILLDEA-EGNSIREAEHRAAMKVLENDELLR  322 (341)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHHHcCCCCCceEEEEeccCC-----EEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHhhhhh
Confidence            4799999999999998765 5999877 565     999999999999987 599999999999999999987654

>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}

Probab=98.88  E-value=1.9e-10  Score=115.37  Aligned_cols=69  Identities=22%  Similarity=0.177  Sum_probs=0.0

Q ss_pred             CCChhHHHHHHHHHcCCCC-CcEEEeecCCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          156 TVFCKSILNEFAVKMNLEL-PAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~l-P~Y~~~~~p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      ..|||+.||||||++++.. |.|+++.+.   ..|++.|.|+|+.++.|.|+|||+|||.||+.||..|....
T Consensus       253 ~~d~Kt~LqE~~Q~~~~~~~~~Y~~~~~~---GpF~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~~L~~~~  322 (341)
T 3rv0_A          253 NKNAKNELAELLQINKLGHKLHYRKLTEM---PPFRVEVKIGDILLDEAEGNSIREAEHRAAMKVLENDELLR  322 (341)
T ss_dssp             -------------------------------------------------------------------------
T ss_pred             ccCHHHHHHHHHHHcCCCCCceEEEEecc---CCEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHhhhhh
Confidence            4699999999999998765 599987752   12999999999999999999999999999999999997543

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=98.63  E-value=4.3e-08  Score=93.77  Aligned_cols=67  Identities=19%  Similarity=0.123  Sum_probs=51.3

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeecCCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          158 FCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       158 n~Ks~LqE~cQk~~~~lP~Y~~~~~p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      ++|+.|+||+|.... .+.|.... ..|.+.|++.|.|+|+.++.|.|+|||+|||.||+.||..|..+
T Consensus       198 ~~k~~l~el~~~~~~-~~~~~~~~-~~~~~~f~v~v~v~~~~~~~G~G~SkK~Aeq~AA~~AL~~l~~~  264 (265)
T 3c4b_A          198 VPRSPVRELLEMEPE-TAKFSPAE-RTYDGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKAN  264 (265)
T ss_dssp             SCCCHHHHHHHHCTT-TEEECCCE-ECTTSCEEEEEEETTTEEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHhccC-Cceeeecc-ccCCCcEEEEEEEecceEEEEeeCCHHHHHHHHHHHHHHHHhhC
Confidence            456666666665542 22333222 36889999999999999999999999999999999999999643

>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A

Probab=98.47  E-value=9.4e-08  Score=91.42  Aligned_cols=67  Identities=15%  Similarity=0.104  Sum_probs=50.1

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           73 MHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        73 npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      ++|+.||||.|.... .+.|..  .++.|++.|++.|+|+|..++.| .|+|||+|||+||+.||+.|...
T Consensus       198 ~~k~~l~el~~~~~~-~~~~~~--~~~~~~~~f~v~v~v~~~~~~~G-~G~SkK~Aeq~AA~~AL~~l~~~  264 (265)
T 3c4b_A          198 VPRSPVRELLEMEPE-TAKFSP--AERTYDGKVRVTVEVVGKGKFKG-VGRSYRIAKSAAARRALRSLKAN  264 (265)
T ss_dssp             SCCCHHHHHHHHCTT-TEEECC--CEECTTSCEEEEEEETTTEEEEE-EESSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHhccC-Cceeee--ccccCCCcEEEEEEEecceEEEE-eeCCHHHHHHHHHHHHHHHHhhC
Confidence            445555555555432 223322  45578999999999999888887 59999999999999999999753

>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}

Probab=96.59  E-value=0.0044  Score=51.97  Aligned_cols=70  Identities=9%  Similarity=0.093  Sum_probs=51.8

Q ss_pred             CChhHHHHHHHHHcC-----CCCCcEEEeecCCCCCeEEEEEEECC----EEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          157 VFCKSILNEFAVKMN-----LELPAYSTRQSEALLPVFVSSLVFNG----VTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       157 ~n~Ks~LqE~cQk~~-----~~lP~Y~~~~~p~H~~~F~~~V~I~G----k~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      .+-++.|+.||++.-     ...|.|.+.........| |+|.+-.    +.+.+....|||.||+.||-+|...|....
T Consensus         4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~G   82 (102)
T 2kou_A            4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLG   82 (102)
T ss_dssp             SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGGGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHhCCCccccCccceEEEeEeecCCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHCC
Confidence            357899999999863     245889876553234567 9998853    223333469999999999999999998765

>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}

Probab=93.20  E-value=0.11  Score=43.46  Aligned_cols=73  Identities=11%  Similarity=0.040  Sum_probs=50.6

Q ss_pred             CChHHHHHHHHHHcC-----CCCCeEEEeccCCCCCCeEEEEEEECCE---EeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           72 LMHKNRLQEHAQRSG-----IPLPVYQSHNEGFQHAPKFRASVSVDGV---TYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        72 ~npKS~LQE~cQK~g-----~~lP~Yev~~eGP~H~p~FtvtV~V~G~---~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      .+.++.|+.||++..     ...|.|.+..... ....| |+|.+=..   .-..|..-.+|+.||+.||.+|...|.+.
T Consensus         4 ~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~-~~~~~-c~v~LP~~splr~i~g~~~~sk~~AK~sAAf~Ac~~L~~~   81 (102)
T 2kou_A            4 GSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDE-FGGTI-CRITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNL   81 (102)
T ss_dssp             SHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCG-GGCEE-EEEECCTTCSSCCEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCccccCccceEEEeEeec-CCCeE-EEEECCCCCCCCeeeCCccccHHHHHHHHHHHHHHHHHHC
Confidence            467899999999953     2458898655211 12467 99887431   11112234899999999999999999987


Q ss_pred             ccC
Q 014689          144 IKD  146 (420)
Q Consensus       144 ~~~  146 (420)
                      +-.
T Consensus        82 G~L   84 (102)
T 2kou_A           82 GVL   84 (102)
T ss_dssp             CSC
T ss_pred             CCC
Confidence            743

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=89.46  E-value=0.28  Score=54.97  Aligned_cols=67  Identities=19%  Similarity=0.268  Sum_probs=50.0

Q ss_pred             CChhHHHHHHHHHcCCCCCcEEEeec--------C-----CCCC-eEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHH
Q 014689          157 VFCKSILNEFAVKMNLELPAYSTRQS--------E-----ALLP-VFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRT  222 (420)
Q Consensus       157 ~n~Ks~LqE~cQk~~~~lP~Y~~~~~--------p-----~H~~-~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~  222 (420)
                      ..+|.++++   |.|-. ..|.+.+.        |     ...+ .|.|.+.+-+-.+-+|..+.||+|||.||+.||+.
T Consensus        17 ~~pk~~~~q---~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~   92 (950)
T 3htx_A           17 PTPKAIIHQ---KFGAK-ASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDK   92 (950)
T ss_dssp             CCCHHHHHH---TTGGG-SEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHH---HhCcc-eeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHHH
Confidence            357777764   44444 48977542        1     2223 79999999876666799999999999999999999


Q ss_pred             HHhhc
Q 014689          223 LLVTS  227 (420)
Q Consensus       223 L~~~s  227 (420)
                      |+.+.
T Consensus        93 ~g~~~   97 (950)
T 3htx_A           93 LGIRP   97 (950)
T ss_dssp             TTSTT
T ss_pred             hCCCc
Confidence            98765

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=82.26  E-value=1.2  Score=50.08  Aligned_cols=68  Identities=21%  Similarity=0.310  Sum_probs=48.9

Q ss_pred             CChHHHHHHHHHHcCCCCCeEEEec--cC----------CCCC-CeEEEEEEECCEEeecCCccccchHHHHHHHHHHHH
Q 014689           72 LMHKNRLQEHAQRSGIPLPVYQSHN--EG----------FQHA-PKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALE  138 (420)
Q Consensus        72 ~npKS~LQE~cQK~g~~lP~Yev~~--eG----------P~H~-p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~  138 (420)
                      ..||..++   ||.|.. ..|.+++  ++          |... -.|.|.+.+-+..+.++ ..+.||+|||.||+.||+
T Consensus        17 ~~pk~~~~---q~~~~~-~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~-~~~~kkd~eq~aa~~al~   91 (950)
T 3htx_A           17 PTPKAIIH---QKFGAK-ASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSN-VFKKKKDSEQSAAELALD   91 (950)
T ss_dssp             CCCHHHHH---HTTGGG-SEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECC-CBSCHHHHHHHHHHHHHT
T ss_pred             CCHHHHHH---HHhCcc-eeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecc-hhhccccHHHHHHHHHHH
Confidence            47888765   444433 5887755  11          1222 38999999987766665 589999999999999999


Q ss_pred             HHHhcc
Q 014689          139 CISKKI  144 (420)
Q Consensus       139 ~L~~~~  144 (420)
                      +|+..+
T Consensus        92 ~~g~~~   97 (950)
T 3htx_A           92 KLGIRP   97 (950)
T ss_dssp             TTTSTT
T ss_pred             HhCCCc
Confidence            987653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	420
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	3e-12
d1x48a1	76	d.50.1.1 (A:8-83) dsRNA-dependent protein kinase p	2e-07
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	6e-12
d1o0wa2	69	d.50.1.1 (A:168-236) RNase III, C-terminal domain	2e-11
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	7e-11
d1x47a1	85	d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapie	6e-10
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	8e-11
d2nuga2	68	d.50.1.1 (A:151-218) RNase III, C-terminal domain	4e-10
d1t4oa_	81	d.50.1.1 (A:) RNase III, C-terminal domain {Baker'	3e-10
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	7e-10
d1whna_	128	d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like,	2e-08
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	9e-10
d1qu6a1	90	d.50.1.1 (A:1-90) dsRNA-dependent protein kinase p	2e-05
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	4e-09
d1qu6a2	89	d.50.1.1 (A:91-179) dsRNA-dependent protein kinase	2e-04
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	7e-09
d1uila_	113	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	1e-05
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	7e-09
d1whqa_	99	d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {	2e-04
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	1e-08
d1x49a1	85	d.50.1.1 (A:8-92) dsRNA-dependent protein kinase p	1e-04
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	1e-08
d1di2a_	69	d.50.1.1 (A:) Double-stranded RNA-binding protein	3e-06
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	7e-08
d1ekza_	76	d.50.1.1 (A:) Staufen, domain III {Fruit fly (Dros	3e-04
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	2e-07
d2cpna1	76	d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Hu	4e-05
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	5e-07
d2dmya1	84	d.50.1.1 (A:8-91) Spermatid perinuclear RNA-bindin	3e-05
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	7e-07
d2b7va1	71	d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (R	6e-06
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	1e-06
d2dixa1	73	d.50.1.1 (A:7-79) Interferon-inducible double stra	0.001
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	2e-06
d2b7ta1	73	d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (R	6e-04
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	3e-05
d1uhza_	89	d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus muscul	0.003

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (144), Expect = 3e-12
 Identities = 11/69 (15%), Positives = 24/69 (34%), Gaps = 2/69 (2%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
              +   AQ+  + +   Q      +   +F     +    Y    +   ++ A+Q  AK
Sbjct: 2   IGLVNSFAQKKKLSVNYEQCE-PNSELPQRFICKCKIGQTMYG-TGSGVTKQEAKQLAAK 59

Query: 135 IALECISKK 143
            A + + K 
Sbjct: 60  EAYQKLLKS 68

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.8 bits (108), Expect = 2e-07
 Identities = 20/75 (26%), Positives = 33/75 (44%), Gaps = 4/75 (5%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 219
             ++N FA K  L +       +  L   F+         Y    G +K+EA+QLAA+  
Sbjct: 2   IGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEA 61

Query: 220 IRTLL----VTSGSA 230
            + LL     T+G++
Sbjct: 62  YQKLLKSPPKTAGTS 76

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 58.7 bits (142), Expect = 6e-12
 Identities = 23/67 (34%), Positives = 31/67 (46%), Gaps = 2/67 (2%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
           K+ L E     +   P Y   ++E      +FV  +  NG T     GR+KKEAE+ AAR
Sbjct: 3   KTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAAR 62

Query: 218 AVIRTLL 224
                LL
Sbjct: 63  IAYEKLL 69

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 57.2 bits (138), Expect = 2e-11
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 74  HKNRLQEHAQRSGIPLPVYQS-HNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDV 132
           +K  LQE  Q      P Y     E       F   V V+G T  +    + +K AE++ 
Sbjct: 2   YKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRT-KKEAEKEA 60

Query: 133 AKIALECI 140
           A+IA E +
Sbjct: 61  ARIAYEKL 68

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.2 bits (135), Expect = 7e-11
 Identities = 21/65 (32%), Positives = 33/65 (50%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 219
             IL+E+  ++    P Y+  + E     F +S+  +GVTY      SKK A+  AARA 
Sbjct: 12  VCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARAT 71

Query: 220 IRTLL 224
           +  L+
Sbjct: 72  LEILI 76

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (128), Expect = 6e-10
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
              L E+ QR     PVY    E    +  F ASV++DGVTY S    S +K A+   A+
Sbjct: 12  VCILHEYMQRVLKVRPVYN-FFECENPSEPFGASVTIDGVTYGSGTASS-KKLAKNKAAR 69

Query: 135 IALECISKKIKDE 147
             LE +      +
Sbjct: 70  ATLEILIPDFVKQ 82

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 55.4 bits (133), Expect = 8e-11
 Identities = 16/67 (23%), Positives = 25/67 (37%), Gaps = 3/67 (4%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNE-GFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
           K  LQE  Q+     P Y+  +  G  H  KF     +             +K AEQ  A
Sbjct: 3   KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLG--EGKSKKEAEQRAA 60

Query: 134 KIALECI 140
           +  ++ +
Sbjct: 61  EELIKLL 67

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]} Length = 68

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

 Score = 53.4 bits (128), Expect = 4e-10
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)

Query: 160 KSILNEFAVKMNLELPAYST--RQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
           K+IL E   K   E P Y     +       F+           GE G+SKKEAEQ AA 
Sbjct: 3   KTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYRTLGE-GKSKKEAEQRAAE 61

Query: 218 AVIRTL 223
            +I+ L
Sbjct: 62  ELIKLL 67

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 81

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 54.3 bits (130), Expect = 3e-10
 Identities = 14/74 (18%), Positives = 22/74 (29%), Gaps = 3/74 (4%)

Query: 74  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
            K +L      + +    Y +  +     P       V   T        + K A    A
Sbjct: 8   AKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAA 66

Query: 134 KIALECISKKIKDE 147
           + AL    KK+ D 
Sbjct: 67  ENALR--DKKMLDF 78

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 54.7 bits (131), Expect = 7e-10
 Identities = 19/80 (23%), Positives = 28/80 (35%), Gaps = 2/80 (2%)

Query: 59  APVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTS 118
             +       P  +  K  L E  +R  +P PVY++              V+V    Y S
Sbjct: 13  MAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCS--VVTVAEQKYQS 70

Query: 119 PNTFSHRKAAEQDVAKIALE 138
                 +K AEQ  A + L 
Sbjct: 71  TLWDKSKKLAEQTAAIVCLR 90

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]} Length = 128

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 20/88 (22%), Positives = 31/88 (35%)

Query: 155 DTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQL 214
             +  K  L E+  +  L  P Y T Q            V      +    +SKK AEQ 
Sbjct: 24  PQITPKMCLLEWCRREKLPQPVYETVQRTIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQT 83

Query: 215 AARAVIRTLLVTSGSATILSEIIKSKGK 242
           AA   +R+  +  G     S  +  + +
Sbjct: 84  AAIVCLRSQGLPEGRLGEESPSLNKRKR 111

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (127), Expect = 9e-10
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 2/78 (2%)

Query: 74  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
               L  + Q+ G+ L   +  N G  H  +F   V +DG  +      S +K A+   A
Sbjct: 15  FMEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRS-KKEAKNAAA 73

Query: 134 KIALECISKKIKDEGCPL 151
           K+A+E ++K+ K    PL
Sbjct: 74  KLAVEILNKE-KKAVSPL 90

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (95), Expect = 2e-05
 Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 1/65 (1%)

Query: 160 KSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARA 218
              LN +  K  + L       S       F   ++ +G  +    GRSKKEA+  AA+ 
Sbjct: 16  MEELNTYRQKQGVVLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKL 75

Query: 219 VIRTL 223
            +  L
Sbjct: 76  AVEIL 80

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 4e-09
 Identities = 20/91 (21%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 62  VLTPNRVPEHLM---HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTS 118
           +LT     E L    +   +   AQ+  + +   Q    G      F     +    Y+ 
Sbjct: 1   LLTTTNSSEGLSMGNYIGLINRIAQKKRLTVNYEQCA-SGVHGPEGFHYKCKMGQKEYSI 59

Query: 119 PNTFSHRKAAEQDVAKIALECISKKIKDEGC 149
             T S ++ A+Q  AK+A   I  +    GC
Sbjct: 60  G-TGSTKQEAKQLAAKLAYLQILSEETGSGC 89

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 15/65 (23%), Positives = 24/65 (36%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 219
             ++N  A K  L +              F          Y+   G +K+EA+QLAA+  
Sbjct: 17  IGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLA 76

Query: 220 IRTLL 224
              +L
Sbjct: 77  YLQIL 81

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 51.2 bits (122), Expect = 7e-09
 Identities = 16/72 (22%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVD----GVTYTSPNTFSHRKAAEQ 130
           K RL ++ Q+  I    Y+    G  H   F A +++     G    +    S++K A Q
Sbjct: 29  KARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQ 87

Query: 131 DVAKIALECISK 142
             A   +  +  
Sbjct: 88  SCALSLVRQLYH 99

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 113

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 7/70 (10%)

Query: 160 KSILNEFAVKMNLELPAYSTR-QSEALLPVF-----VSSLVFNGVTYTGEPGRSKKEAEQ 213
           K+ LN++  K  ++   Y            F     +         +  E G +KK A Q
Sbjct: 29  KARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQ 87

Query: 214 LAARAVIRTL 223
             A +++R L
Sbjct: 88  SCALSLVRQL 97

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.9 bits (121), Expect = 7e-09
 Identities = 18/78 (23%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
           KN L     +  +  P Y+    G ++  KF   V V+G  Y      +++K A+ + A+
Sbjct: 9   KNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAAR 67

Query: 135 IALECISK--KIKDEGCP 150
             +  + +  ++K E  P
Sbjct: 68  DFVNYLVRINEVKSEEVP 85

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]} Length = 99

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 23/65 (35%), Gaps = 1/65 (1%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEP-GRSKKEAEQLAARA 218
           K+ L  +  K  +                F+  +   G  Y G     +KK+A+  AAR 
Sbjct: 9   KNFLYAWCGKRKMTPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARD 68

Query: 219 VIRTL 223
            +  L
Sbjct: 69  FVNYL 73

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (119), Expect = 1e-08
 Identities = 14/71 (19%), Positives = 30/71 (42%), Gaps = 1/71 (1%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
            ++L ++ Q  G+ +   +    G  H  +F   V +D   +      S  + A    AK
Sbjct: 10  MDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSK-QEARNAAAK 68

Query: 135 IALECISKKIK 145
           +A++ +  + K
Sbjct: 69  LAVDILDNENK 79

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (88), Expect = 1e-04
 Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 1/71 (1%)

Query: 154 QDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAE 212
               F    LN++     + +       S       F   ++ +   +    GRSK+EA 
Sbjct: 4   DTPGFYMDKLNKYRQMHGVAITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEAR 63

Query: 213 QLAARAVIRTL 223
             AA+  +  L
Sbjct: 64  NAAAKLAVDIL 74

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 49.3 bits (117), Expect = 1e-08
 Identities = 17/69 (24%), Positives = 29/69 (42%), Gaps = 3/69 (4%)

Query: 73  MHKNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD 131
           M    LQE A + G  LP Y  +   G  H  +F  +  V+    T   + + ++ A++ 
Sbjct: 1   MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETG--SGTSKQVAKRV 58

Query: 132 VAKIALECI 140
            A+  L   
Sbjct: 59  AAEKLLTKF 67

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]} Length = 69

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

 Score = 42.8 bits (100), Expect = 3e-06
 Identities = 16/66 (24%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
              L E AV+    LP Y+  Q         F  +        TG    SK+ A+++AA 
Sbjct: 3   VGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVETGSG-TSKQVAKRVAAE 61

Query: 218 AVIRTL 223
            ++   
Sbjct: 62  KLLTKF 67

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.3 bits (112), Expect = 7e-08
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
            +++ E   +  + +       EG  H   F  +  V  +        + +K +++  A+
Sbjct: 10  ISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVT--EGEGNGKKVSKKRAAE 67

Query: 135 IALECISK 142
             L  + K
Sbjct: 68  KMLVELQK 75

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 36.9 bits (85), Expect = 3e-04
 Identities = 13/64 (20%), Positives = 25/64 (39%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 219
            S ++E  +K N+ +     R+          +    G   T   G  KK +++ AA  +
Sbjct: 10  ISQVHEIGIKRNMTVHFKVLREEGPAHMKNFITACIVGSIVTEGEGNGKKVSKKRAAEKM 69

Query: 220 IRTL 223
           +  L
Sbjct: 70  LVEL 73

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.9 bits (108), Expect = 2e-07
 Identities = 13/65 (20%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 74  HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
               LQE   + G  LP Y    E    A +   +++     +    + + +K A+++ A
Sbjct: 11  PVGALQELVVQKGWRLPEYTVTQE-SGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAA 69

Query: 134 KIALE 138
              L 
Sbjct: 70  AKMLL 74

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]} Length = 76

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 4e-05
 Identities = 15/65 (23%), Positives = 25/65 (38%), Gaps = 1/65 (1%)

Query: 160 KSILNEFAVKMNLELPAYS-TRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARA 218
              L E  V+    LP Y+ T++S        +             G SKK A++ AA  
Sbjct: 12  VGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFIEIGSGTSKKLAKRNAAAK 71

Query: 219 VIRTL 223
           ++  +
Sbjct: 72  MLLRV 76

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.9 bits (106), Expect = 5e-07
 Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 75  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
            N L    Q    P   Y+     G  HAP F  SV VDG TY +      +K A+  VA
Sbjct: 12  MNALMRLNQIR--PGLQYKLLSQSGPVHAPVFTMSVDVDGTTYEASG--PSKKTAKLHVA 67

Query: 134 KIALECI 140
              L+ +
Sbjct: 68  VKVLQAM 74

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (94), Expect = 3e-05
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSGS 229
           PVF  S+  +G TY    G SKK A+   A  V++ +   +G 
Sbjct: 39  PVFTMSVDVDGTTYEA-SGPSKKTAKLHVAVKVLQAMGYPTGF 80

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.4 bits (105), Expect = 7e-07
 Identities = 20/65 (30%), Positives = 33/65 (50%), Gaps = 4/65 (6%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAV 219
             ILNE    +  +  + S    E+    FV S+V +G  + G  GR+KK A+  AA++ 
Sbjct: 7   VMILNELRPGLKYDFLSES---GESHAKSFVMSVVVDGQFFEGS-GRNKKLAKARAAQSA 62

Query: 220 IRTLL 224
           + T+ 
Sbjct: 63  LATVF 67

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 71

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 41.7 bits (98), Expect = 6e-06
 Identities = 17/67 (25%), Positives = 24/67 (35%), Gaps = 8/67 (11%)

Query: 75  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
              L E           Y      G  HA  F  SV VDG  +    +  ++K A+   A
Sbjct: 7   VMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF--EGSGRNKKLAKARAA 59

Query: 134 KIALECI 140
           + AL  +
Sbjct: 60  QSALATV 66

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.9 bits (103), Expect = 1e-06
 Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAK 134
              L E+  ++          ++   H P F   V+V  +T T     + +K A+   A+
Sbjct: 5   IQVLHEYGMKTKNIPVYECERSDVQIHVPTFTFRVTVGDITCT--GEGTSKKLAKHRAAE 62

Query: 135 IALECI 140
            A+  +
Sbjct: 63  AAINIL 68

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.1 bits (80), Expect = 0.001
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSE--ALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAAR 217
             +L+E+ +K    +P Y   +S+    +P F   +    +T TGE   SKK A+  AA 
Sbjct: 5   IQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDITCTGEG-TSKKLAKHRAAE 62

Query: 218 AVIRTL 223
           A I  L
Sbjct: 63  AAINIL 68

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.3 bits (102), Expect = 2e-06
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 5/65 (7%)

Query: 75  KNRLQEHAQRSGIPLPVYQ-SHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
           KN L +  +    P   Y      G  HAP F  SV V+G  +    +   +K A+   A
Sbjct: 7   KNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVFEG--SGPTKKKAKLHAA 62

Query: 134 KIALE 138
           + AL 
Sbjct: 63  EKALR 67

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 73

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.0 bits (83), Expect = 6e-04
 Identities = 14/38 (36%), Positives = 23/38 (60%), Gaps = 1/38 (2%)

Query: 187 PVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL 224
           P+FV S+  NG  + G  G +KK+A+  AA   +R+ +
Sbjct: 34  PLFVMSVEVNGQVFEGS-GPTKKKAKLHAAEKALRSFV 70

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.2 bits (93), Expect = 3e-05
 Identities = 15/77 (19%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 75  KNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVA 133
            +RL +  Q      P Y   +  G     +F   V V      +  T  ++K A+++ A
Sbjct: 9   ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVG--NEVATGTGPNKKIAKKNAA 66

Query: 134 KIALECISKKIKDEGCP 150
           +  L  +  K       
Sbjct: 67  EAMLLQLGYKASTSLQD 83

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 160 KSILNEFAVKMNLELPAYSTRQSEALLPVFVS-SLVFNGVTYTGEPGRSKKEAEQLAARA 218
            S L +       + P Y       +         V  G       G +KK A++ AA A
Sbjct: 9   ISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVATGTGPNKKIAKKNAAEA 68

Query: 219 VIRTL 223
           ++  L
Sbjct: 69  MLLQL 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	420
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.76
d1o0wa2	69	RNase III, C-terminal domain {Thermotoga maritima	99.76
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.73
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.72
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.72
d2dixa1	73	Interferon-inducible double stranded RNA-dependent	99.72
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.71
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.71
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1di2a_	69	Double-stranded RNA-binding protein A, second dsRB	99.71
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.71
d2nuga2	68	RNase III, C-terminal domain {Aquifex aeolicus [Ta	99.71
d2cpna1	76	TAR RNA-binding protein 2 {Human (Homo sapiens) [T	99.7
d1qu6a1	90	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.69
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.69
d1x48a1	76	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.69
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.69
d1x49a1	85	dsRNA-dependent protein kinase pkr {Mouse (Mus mus	99.69
d1uhza_	89	staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10	99.68
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.68
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.67
d1whqa_	99	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.66
d1qu6a2	89	dsRNA-dependent protein kinase pkr {Human (Homo sa	99.65
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.65
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.64
d1x47a1	85	Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}	99.64
d1ekza_	76	Staufen, domain III {Fruit fly (Drosophila melanog	99.62
d1whna_	128	tRNA-dihydrouridine synthase 2-like, Dus2l (231001	99.6
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.59
d1uila_	113	ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus mus	99.59
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.52
d2b7va1	71	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.5
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.5
d1t4oa_	81	RNase III, C-terminal domain {Baker's yeast (Sacch	99.46
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.35
d2b7ta1	73	dsRNA-specific editase 1 {Rat (Rattus norvegicus)	99.34
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	99.34
d2dmya1	84	Spermatid perinuclear RNA-binding protein {Human (	99.33

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=7.2e-19  Score=135.59  Aligned_cols=66  Identities=32%  Similarity=0.333  Sum_probs=63.1

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHH
Q 014689          158 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  223 (420)
Q Consensus       158 n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L  223 (420)
                      |||+.||||||++++.+|.|+++..  ++|++.|++.|.|+|..+++|.|+|||+|||+||+.||+.|
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g~g~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATGKGRTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHh
Confidence            7999999999999999999998765  79999999999999999999999999999999999999987

>d1o0wa2 d.50.1.1 (A:168-236) RNase III, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.76  E-value=5.8e-19  Score=136.12  Aligned_cols=67  Identities=30%  Similarity=0.258  Sum_probs=64.0

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHH
Q 014689           73 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI  140 (420)
Q Consensus        73 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L  140 (420)
                      |||+.||||||++++.+|.|+++. +|++|++.|++.|.|+|..++.| .|+|||+||++||+.||+.|
T Consensus         1 d~Ks~LqE~~Qk~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~~~g-~g~sKK~Aeq~AA~~aL~~L   68 (69)
T d1o0wa2           1 DYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATG-KGRTKKEAEKEAARIAYEKL   68 (69)
T ss_dssp             CHHHHHHHHHHHHHSSCCEEEEEEEECCTTSCEEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHcCCCCCEEEEEEeeCCCCCceEEEEEEECCEEEEEE-EeCCHHHHHHHHHHHHHHHh
Confidence            899999999999999999999887 79999999999999999999887 69999999999999999987

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=5.1e-18  Score=132.65  Aligned_cols=70  Identities=20%  Similarity=0.289  Sum_probs=63.8

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      ++||++.||||||++++ .|.|+++. +||+|++.|+++|.|++. ++.| .|+|||+||++||+.||+.|...
T Consensus         1 gK~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g-~g~sKK~Aeq~AA~~al~~L~~~   71 (73)
T d2dixa1           1 GKTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TCTG-EGTSKKLAKHRAAEAAINILKAN   71 (73)
T ss_dssp             CCCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EEEE-CSSCTTHHHHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEEE-EEEe-ccccHHHHHHHHHHHHHHHHHhc
Confidence            47999999999999987 79999877 899999999999999997 5566 59999999999999999999864

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.72  E-value=6.9e-18  Score=133.50  Aligned_cols=69  Identities=28%  Similarity=0.398  Sum_probs=64.3

Q ss_pred             hhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689          159 CKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  228 (420)
Q Consensus       159 ~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s~  228 (420)
                      ||++||||||++++++ .|.+... ++|.+.|+|+|.|+|+.|+.|.|+|||+|||+||+.||..|....+
T Consensus         1 Y~s~L~E~~Qk~~~~~-~~~~~~~G~~h~~~F~~~v~v~~~~~~~g~G~sKK~Aeq~AA~~Al~~L~~~~~   70 (76)
T d1x48a1           1 YIGLVNSFAQKKKLSV-NYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPP   70 (76)
T ss_dssp             HHHHHHHHHHHTTCCE-EEEECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred             ChHHHHHHHHHhCCCC-ccccCCcCCCCCCcEEEEEEECCEEeCCcCccHHHHHHHHHHHHHHHHHHccCC
Confidence            8999999999999987 7887765 8999999999999999999999999999999999999999998764

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.72  E-value=4.4e-18  Score=131.20  Aligned_cols=66  Identities=33%  Similarity=0.281  Sum_probs=61.3

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHH
Q 014689          158 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL  224 (420)
Q Consensus       158 n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~  224 (420)
                      |||+.||||||++++.+|.|+++..  ++|++.|+|.|.|+|. .+.|.|+|||.|||+||+.||..|+
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~aL~~Lk   68 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKSKKEAEQRAAEELIKLLE   68 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCE-EEEEecCCHHHHHHHHHHHHHHHhC
Confidence            7999999999999999999998765  7899999999999996 4689999999999999999999884

>d2dixa1 d.50.1.1 (A:7-79) Interferon-inducible double stranded RNA-dependent protein kinase activator A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Interferon-inducible double stranded RNA-dependent protein kinase activator A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=9.5e-18  Score=131.08  Aligned_cols=69  Identities=26%  Similarity=0.366  Sum_probs=63.4

Q ss_pred             CChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          157 VFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       157 ~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      .|||+.||||||++++ .|.|+++..  ++|++.|+|.|.|++. +..|.|+|||+||++||+.||..|..++
T Consensus         2 K~Pis~L~E~~qk~~~-~p~y~~~~~~Gp~h~~~F~~~v~v~~~-~~~g~g~sKK~Aeq~AA~~al~~L~~~~   72 (73)
T d2dixa1           2 KTPIQVLHEYGMKTKN-IPVYECERSDVQIHVPTFTFRVTVGDI-TCTGEGTSKKLAKHRAAEAAINILKANA   72 (73)
T ss_dssp             CCHHHHHHHHHHHTTC-CCEEEEEEEECSSSSCEEEEEEEETTE-EEEECSSCTTHHHHHHHHHHHHHHHHTC
T ss_pred             cCHHHHHHHHHHhCCC-CCEEEEeeeeCCCCCcEEEEEEEEEEE-EEEeccccHHHHHHHHHHHHHHHHHhcC
Confidence            5899999999999988 689998765  7999999999999986 6789999999999999999999998775

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.71  E-value=1e-17  Score=129.68  Aligned_cols=65  Identities=23%  Similarity=0.272  Sum_probs=60.9

Q ss_pred             hhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHH
Q 014689          159 CKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLL  224 (420)
Q Consensus       159 ~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~  224 (420)
                      +|+.||||||++++.+|.|+++.+  ++|++.|+|.|.|+|..+ .|.|+|||+||++||+.||..|+
T Consensus         2 Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~g~sKK~Aeq~AA~~aL~~L~   68 (69)
T d1di2a_           2 PVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE-TGSGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             HHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEEE-ecCcCcHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999776  789999999999999764 79999999999999999999986

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2e-17  Score=130.03  Aligned_cols=68  Identities=24%  Similarity=0.222  Sum_probs=62.6

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHH
Q 014689          155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTL  223 (420)
Q Consensus       155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L  223 (420)
                      ...|||+.||||||++++.+|.|+++.+  ++|.+.|+|.|.+++. .+.|.|+|||+|||+||+.||..|
T Consensus         7 ~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1           7 SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEecce-eeccccccHHHHHHHHHHHHHHhC
Confidence            3569999999999999999999998765  7899999999999986 578999999999999999999986

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=2.2e-17  Score=132.71  Aligned_cols=74  Identities=30%  Similarity=0.337  Sum_probs=67.4

Q ss_pred             CCCCCChhHHHHHHHHHcCCCCCcEEEeecCCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          153 NQDTVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       153 ~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      +....|||+.||||||++++.+|.|.+....+|...|.|+|.|+|+.|++|.|+|||.||++||+.||+.|..+
T Consensus         5 n~~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g~~~~F~~~v~i~g~~~~~g~G~sKK~Aeq~AA~~AL~~L~~~   78 (85)
T d1x47a1           5 NPNGKSEVCILHEYMQRVLKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD   78 (85)
T ss_dssp             CTTCCCHHHHHHHHHHHHTCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred             CCCCcCHHHHHHHHHHHhCCCCCCeEEEecCCCCCCEEEEEEECCEEEecCCcchHHHHHHHHHHHHHHHHHHH
Confidence            44567999999999999999999999988766777899999999999999999999999999999999999543

>d1di2a_ d.50.1.1 (A:) Double-stranded RNA-binding protein A, second dsRBD {Xenopus laevis [TaxId: 8355]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Double-stranded RNA-binding protein A, second dsRBD
species: Xenopus laevis [TaxId: 8355]

Probab=99.71  E-value=9.3e-18  Score=129.93  Aligned_cols=67  Identities=24%  Similarity=0.290  Sum_probs=62.5

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHH
Q 014689           73 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECIS  141 (420)
Q Consensus        73 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~  141 (420)
                      .||+.||||||++++.+|.|+++. +|++|++.|++.|.|+|..+ .| .|+|||+||++||+.||+.|.
T Consensus         1 ~Pv~~LqE~~q~~~~~~P~Y~~~~~~G~~h~~~F~~~v~v~~~~~-~g-~g~sKK~Aeq~AA~~aL~~L~   68 (69)
T d1di2a_           1 MPVGSLQELAVQKGWRLPEYTVAQESGPPHKREFTITCRVETFVE-TG-SGTSKQVAKRVAAEKLLTKFK   68 (69)
T ss_dssp             CHHHHHHHHHHHHTCCCCEEEEEEEESCGGGCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHcCCCCCeEEEEEeeCCCCCcceEEEEEEeeEEE-ec-CcCcHHHHHHHHHHHHHHHhc
Confidence            489999999999999999999988 79999999999999999876 55 699999999999999999986

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=7.8e-18  Score=136.96  Aligned_cols=75  Identities=25%  Similarity=0.358  Sum_probs=67.6

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccC
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD  146 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~  146 (420)
                      ...|||+.||||||++++ .|.|.++. +||+|++.|+|.|.|+|..|+.| .|+|||+||++||+.||+.|..+.+.
T Consensus        11 ~~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g-~G~sKK~Aeq~AA~~aL~~L~~~~~~   86 (90)
T d1qu6a1          11 SAGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPEG-EGRSKKEAKNAAAKLAVEILNKEKKA   86 (90)
T ss_dssp             SSCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCEE-ECCSSHHHHHHHHHHHHHHHHSCCSC
T ss_pred             CCCCHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeeecc-CCCcHHHHHHHHHHHHHHHHHhhCCC
Confidence            356999999999999988 68898876 89999999999999999999876 69999999999999999999876543

>d2nuga2 d.50.1.1 (A:151-218) RNase III, C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.71  E-value=6.9e-18  Score=130.08  Aligned_cols=67  Identities=27%  Similarity=0.241  Sum_probs=62.0

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHH
Q 014689           73 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECIS  141 (420)
Q Consensus        73 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~  141 (420)
                      |||+.||||||++++.+|.|+++. +|++|++.|++.|.|+|.. +.| .|+|||+|||+||+.||+.|.
T Consensus         1 d~Ks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g-~g~sKK~Aeq~AA~~aL~~Lk   68 (68)
T d2nuga2           1 DYKTILQEITQKRWKERPEYRLISVEGPHHKKKFIVEAKIKEYR-TLG-EGKSKKEAEQRAAEELIKLLE   68 (68)
T ss_dssp             CHHHHHHHHHHHHHSCCCEEEEEEEESCGGGCEEEEEEEETTEE-EEE-EESSHHHHHHHHHHHHHHHHC
T ss_pred             CcHHHHHHHHHHcCCCCCEEEEEEeeCCCCCcEEEEEEEECCEE-EEE-ecCCHHHHHHHHHHHHHHHhC
Confidence            799999999999999999999877 8999999999999999975 566 599999999999999999873

>d2cpna1 d.50.1.1 (A:150-225) TAR RNA-binding protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: TAR RNA-binding protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=1.9e-17  Score=130.20  Aligned_cols=69  Identities=22%  Similarity=0.251  Sum_probs=63.6

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHH
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECI  140 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L  140 (420)
                      ...|||+.||||||++++.+|.|+++. +|++|.+.|++.|.+++.. +.| .|+|||+||++||+.||+.|
T Consensus         7 ~~~npks~LqE~~q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~-~~g-~G~SKK~Aeq~AA~~aL~~L   76 (76)
T d2cpna1           7 SECNPVGALQELVVQKGWRLPEYTVTQESGPAHRKEFTMTCRVERFI-EIG-SGTSKKLAKRNAAAKMLLRV   76 (76)
T ss_dssp             CCCCHHHHHHHHHHHHTCCCCEEEEEEEECCSSSCEEEEEEEETTEE-EEE-EESSHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHcCCCCCEEEEeeeeccCCCccEEEEEEeccee-ecc-ccccHHHHHHHHHHHHHHhC
Confidence            358999999999999999999999887 8999999999999999975 566 69999999999999999976

>d1qu6a1 d.50.1.1 (A:1-90) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.69  E-value=1.2e-17  Score=135.79  Aligned_cols=73  Identities=23%  Similarity=0.302  Sum_probs=66.4

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689          155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  228 (420)
Q Consensus       155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s~  228 (420)
                      ...+||+.||||||++++ .|.|.++..  ++|++.|+|.|.|+|+.+++|.|+|||+||+.||+.||..|.....
T Consensus        11 ~~~~y~s~LqE~~Qk~~~-~p~y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~Aeq~AA~~aL~~L~~~~~   85 (90)
T d1qu6a1          11 SAGFFMEELNTYRQKQGV-VLKYQELPNSGPPHDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKEKK   85 (90)
T ss_dssp             SSCSHHHHHHHHHHHHTC-CCEEEEEESCBTTTBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSCCS
T ss_pred             CCCCHHHHHHHHHHHhCC-CCcEEEEEeeCCCCCceEEEEEEECceeeeccCCCcHHHHHHHHHHHHHHHHHhhCC
Confidence            346999999999999988 579998765  7999999999999999999999999999999999999999987653

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.7e-17  Score=133.52  Aligned_cols=72  Identities=19%  Similarity=0.236  Sum_probs=66.0

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  228 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s~  228 (420)
                      ..|||++||||||++++. |.|.++..  ++|.+.|+|.|.|+|..++.|.|+|||+||+.||+.||..|.....
T Consensus         6 ~~~yk~~L~E~~Qk~~~~-~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g~g~sKK~Aeq~AA~~aL~~L~~~~~   79 (85)
T d1x49a1           6 PGFYMDKLNKYRQMHGVA-ITYKELSTSGPPHDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNENK   79 (85)
T ss_dssp             TTHHHHHHHHHHHHHTCC-EEEEEEEEESCSSSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTCC
T ss_pred             chhHHHHHHHHHHhcCCC-CeEEEEEecCCCCCceEEEEEecCceEeeccccccHHHHHHHHHHHHHHHHHHcCc
Confidence            468999999999999995 79998765  7999999999999999999999999999999999999999987653

>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=2.3e-17  Score=130.47  Aligned_cols=70  Identities=16%  Similarity=0.170  Sum_probs=64.5

Q ss_pred             hHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhccc
Q 014689           74 HKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIK  145 (420)
Q Consensus        74 pKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~  145 (420)
                      |+++||||||++++.+ .|++..+||+|++.|+|+|.|+|..|+.| .|+|||+|||+||+.||+.|....+
T Consensus         1 Y~s~L~E~~Qk~~~~~-~~~~~~~G~~h~~~F~~~v~v~~~~~~~g-~G~sKK~Aeq~AA~~Al~~L~~~~~   70 (76)
T d1x48a1           1 YIGLVNSFAQKKKLSV-NYEQCEPNSELPQRFICKCKIGQTMYGTG-SGVTKQEAKQLAAKEAYQKLLKSPP   70 (76)
T ss_dssp             HHHHHHHHHHHTTCCE-EEEECCCSSSSSCCEEEEEEESSCEEEEE-EESSHHHHHHHHHHHHHHHHHHSCC
T ss_pred             ChHHHHHHHHHhCCCC-ccccCCcCCCCCCcEEEEEEECCEEeCCc-CccHHHHHHHHHHHHHHHHHHccCC
Confidence            7999999999999866 67777789999999999999999999987 6999999999999999999998754

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=4.5e-17  Score=132.25  Aligned_cols=71  Identities=20%  Similarity=0.079  Sum_probs=65.2

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      ..|+|+.||||||+++|.+|.|+++.+  ++|.+.|+|.|+|+|..+ +|.|+|||+||+.||+.||+.|....
T Consensus         5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~g~g~SKK~Ae~~AA~~aL~~l~~~~   77 (89)
T d1uhza_           5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVA-TGTGPNKKIAKKNAAEAMLLQLGYKA   77 (89)
T ss_dssp             SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTSSH
T ss_pred             CCCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeeec-cccchHHHHHHHHHHHHHHHHhCccC
Confidence            469999999999999999999998765  799999999999999875 79999999999999999999996554

>d1x49a1 d.50.1.1 (A:8-92) dsRNA-dependent protein kinase pkr {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.69  E-value=1.7e-17  Score=133.53  Aligned_cols=75  Identities=19%  Similarity=0.276  Sum_probs=67.7

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccC
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD  146 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~  146 (420)
                      ...|||+.||||||++++ .|.|+++. +||+|++.|+|.|+|+|..|+.| .|+|||+||+.||+.||+.|......
T Consensus         5 ~~~~yk~~L~E~~Qk~~~-~~~y~~~~~~Gp~h~~~F~~~v~v~g~~~~~g-~g~sKK~Aeq~AA~~aL~~L~~~~~~   80 (85)
T d1x49a1           5 TPGFYMDKLNKYRQMHGV-AITYKELSTSGPPHDRRFTFQVLIDEKEFPEA-KGRSKQEARNAAAKLAVDILDNENKV   80 (85)
T ss_dssp             CTTHHHHHHHHHHHHHTC-CEEEEEEEEESCSSSCEEEEEEEESSCCCCCE-EESSHHHHHHHHHHHHHHHHTTTCCC
T ss_pred             CchhHHHHHHHHHHhcCC-CCeEEEEEecCCCCCceEEEEEecCceEeecc-ccccHHHHHHHHHHHHHHHHHHcCcc
Confidence            357999999999999998 47898876 89999999999999999999876 69999999999999999999886544

>d1uhza_ d.50.1.1 (A:) staufen homolog 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: staufen homolog 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.68  E-value=3.6e-17  Score=132.80  Aligned_cols=71  Identities=21%  Similarity=0.166  Sum_probs=65.5

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      ..||++.||||||++++.+|.|+++. +|++|++.|+|+|+|+|+.+ +| .|+|||+||++||+.||+.|...
T Consensus         5 ~~~P~s~LqE~~Q~~~~~~P~Y~~~~~~g~~h~~~F~~~v~v~~~~~-~g-~g~SKK~Ae~~AA~~aL~~l~~~   76 (89)
T d1uhza_           5 SSGPISRLAQIQQARKEKEPDYILLSERGMPRRREFVMQVKVGNEVA-TG-TGPNKKIAKKNAAEAMLLQLGYK   76 (89)
T ss_dssp             SSCHHHHHHHHHHHTTSCCCEEEEEEEESCSTTCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHTSS
T ss_pred             CCCcHHHHHHHHHhcCCCCCEEEeccccccCCceeEEEEEEEeeeec-cc-cchHHHHHHHHHHHHHHHHhCcc
Confidence            47999999999999999999999887 89999999999999999986 55 69999999999999999999653

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2e-17  Score=134.14  Aligned_cols=72  Identities=24%  Similarity=0.200  Sum_probs=65.6

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhcC
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTSG  228 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s~  228 (420)
                      ..|||++||||||++++.+ .|++... ++|.+.|.|+|.|+|+.|+.|.|+|||+||+.||+.||..|.....
T Consensus        13 ~~n~~s~L~E~~Qk~~~~~-~y~~~~~g~~h~~~F~~~v~i~g~~~~~g~G~sKK~Akq~AA~~Al~~L~~~~~   85 (89)
T d1qu6a2          13 MGNYIGLINRIAQKKRLTV-NYEQCASGVHGPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEET   85 (89)
T ss_dssp             CCCCHHHHHHHHHHSCCEE-EEEEEEECSSSSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCCC
T ss_pred             ccCHHHHHHHHHHhcCCCc-ceeeeccCCCCCCceEEEEEECCccccccccchHHHHHHHHHHHHHHHHHccCC
Confidence            3589999999999999974 8988766 7899999999999999999999999999999999999999987653

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=4.7e-17  Score=134.79  Aligned_cols=71  Identities=24%  Similarity=0.315  Sum_probs=64.0

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEECCEEe-eeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFNGVTY-TGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~Gk~~-~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      ..|||++||||||++++. |.|++... ++|.++|+|+|.|+|..| +.|.|+|||+|||+||+.||+.|....
T Consensus         5 ~~~~Ks~LqE~~qk~k~~-P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g~g~sKK~AEq~AA~~al~~L~~~~   77 (99)
T d1whqa_           5 SSGIKNFLYAWCGKRKMT-PAYEIRAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRIN   77 (99)
T ss_dssp             CCSSHHHHHHHHHHTTCC-CEEEEEEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHHT
T ss_pred             CccHHHHHHHHHHhCCCC-CeEEEecccCCCCceEEEEEEeccccceeccCCccHHHHHHHHHHHHHHHHHHcC
Confidence            569999999999999985 89998766 799999999999998765 779999999999999999999997653

>d1whqa_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.66  E-value=2.7e-17  Score=136.21  Aligned_cols=74  Identities=20%  Similarity=0.271  Sum_probs=66.5

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEe-ecCCccccchHHHHHHHHHHHHHHHhcccC
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTY-TSPNTFSHRKAAEQDVAKIALECISKKIKD  146 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~-~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~  146 (420)
                      ..|||+.||||||++++ .|.|++...|++|.++|+|+|.|+|..| +.| .|+|||+|||+||+.||+.|......
T Consensus         5 ~~~~Ks~LqE~~qk~k~-~P~Y~~~~~G~~h~~~F~~~v~v~g~~~~~~g-~g~sKK~AEq~AA~~al~~L~~~~~~   79 (99)
T d1whqa_           5 SSGIKNFLYAWCGKRKM-TPAYEIRAVGNKNRQKFMCEVRVEGFNYAGMG-NSTNKKDAQSNAARDFVNYLVRINEV   79 (99)
T ss_dssp             CCSSHHHHHHHHHHTTC-CCEEEEEEEECSSSEEEEEEEECTTCSCCEEE-EESSHHHHHHHHHHHHHHHHHHHTSS
T ss_pred             CccHHHHHHHHHHhCCC-CCeEEEecccCCCCceEEEEEEeccccceecc-CCccHHHHHHHHHHHHHHHHHHcCCC
Confidence            47999999999999998 5999988899999999999999999776 555 69999999999999999999887643

>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-dependent protein kinase pkr
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=9.7e-17  Score=130.05  Aligned_cols=74  Identities=19%  Similarity=0.135  Sum_probs=67.5

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcccC
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKIKD  146 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~~  146 (420)
                      ..|||++||||||++++. +.|++...|++|.+.|+|+|.|+|..|+.| .|+|||+||++||+.||+.|..+..+
T Consensus        13 ~~n~~s~L~E~~Qk~~~~-~~y~~~~~g~~h~~~F~~~v~i~g~~~~~g-~G~sKK~Akq~AA~~Al~~L~~~~~~   86 (89)
T d1qu6a2          13 MGNYIGLINRIAQKKRLT-VNYEQCASGVHGPEGFHYKCKMGQKEYSIG-TGSTKQEAKQLAAKLAYLQILSEETG   86 (89)
T ss_dssp             CCCCHHHHHHHHHHSCCE-EEEEEEEECSSSSSEEEEEEEEETTBCCEE-EESSHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             ccCHHHHHHHHHHhcCCC-cceeeeccCCCCCCceEEEEEECCcccccc-ccchHHHHHHHHHHHHHHHHHccCCC
Confidence            579999999999999985 579887899999999999999999999887 59999999999999999999986643

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=6.9e-17  Score=127.28  Aligned_cols=71  Identities=15%  Similarity=0.191  Sum_probs=63.7

Q ss_pred             CCCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           69 PEHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        69 ~~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      ...+||++.||||||+++++ |.|+++. +||+|++.|+|+|+|+|.. +.| .|.|||+|||+||+.||+.|..
T Consensus         4 ~~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~~-~~g-~G~SKK~Aeq~AA~~al~~L~~   75 (76)
T d1ekza_           4 GDKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSIV-TEG-EGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTEE-EEE-CCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCCHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEeeeE-eee-ccCcHHHHHHHHHHHHHHHHHc
Confidence            34589999999999999997 7999888 7999999999999999864 566 6999999999999999999864

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2e-16  Score=136.73  Aligned_cols=90  Identities=24%  Similarity=0.288  Sum_probs=76.1

Q ss_pred             ccccccccccccCCCCCCCCCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEECCEEeecCCccccchHHHHH
Q 014689           52 SASKSVTAPVVLTPNRVPEHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQD  131 (420)
Q Consensus        52 ~ask~~t~p~il~~~~l~~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~  131 (420)
                      +.+.-|..++.+....++...|||+.||||||++++.+|.|+++..  .|+++|+++|.|+|..|..+..++|||+|||+
T Consensus         6 ~~~~~i~~~~~~~r~~~p~~~~pKs~LqE~~Qk~~~~~P~Y~~~~~--~~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~   83 (128)
T d1whna_           6 SGSGIIKMAIRFDRRAYPPQITPKMCLLEWCRREKLPQPVYETVQR--TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQT   83 (128)
T ss_dssp             SSSSSEEECCCCCGGGSCTTCCHHHHHHHHHHHTTCCCCCCCEEEC--SSSCCEEEEEEETTEEEEESSCBSSHHHHHHH
T ss_pred             CCceeeeeeHhhhhccCCCCCCHHHHHHHHHHhcCCCCCeEEEeec--ccCCCCEEEEEECCeEeeccCCcccHHHHHHH
Confidence            3344445566677777788899999999999999999999998875  47789999999999999887645899999999


Q ss_pred             HHHHHHHHHHhc
Q 014689          132 VAKIALECISKK  143 (420)
Q Consensus       132 AAk~AL~~L~~~  143 (420)
                      ||+.||+.|...
T Consensus        84 AA~~AL~~Lg~~   95 (128)
T d1whna_          84 AAIVCLRSQGLP   95 (128)
T ss_dssp             HHHHHHHHHTCS
T ss_pred             HHHHHHHHhCCC
Confidence            999999999653

>d1x47a1 d.50.1.1 (A:8-92) Dgcr8 protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Dgcr8 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=2.7e-16  Score=126.30  Aligned_cols=70  Identities=36%  Similarity=0.379  Sum_probs=62.6

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      .++|||+.||||||++++.+|.|.+.. .|  |...|+++|.|+|..|+.| .|+|||.||++||+.||+.|..
T Consensus         7 ~~K~p~s~LqE~~Qk~~~~~p~Y~~~~~~g--~~~~F~~~v~i~g~~~~~g-~G~sKK~Aeq~AA~~AL~~L~~   77 (85)
T d1x47a1           7 NGKSEVCILHEYMQRVLKVRPVYNFFECEN--PSEPFGASVTIDGVTYGSG-TASSKKLAKNKAARATLEILIP   77 (85)
T ss_dssp             TCCCHHHHHHHHHHHHTCSCCEEEEEECSS--SSCCEEEEEEETTEEEEEE-EESSHHHHHHHHHHHHHHHHCS
T ss_pred             CCcCHHHHHHHHHHHhCCCCCCeEEEecCC--CCCCEEEEEEECCEEEecC-CcchHHHHHHHHHHHHHHHHHH
Confidence            468999999999999999999999877 44  4557999999999999887 6999999999999999999853

>d1ekza_ d.50.1.1 (A:) Staufen, domain III {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Staufen, domain III
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.62  E-value=9.7e-17  Score=126.42  Aligned_cols=69  Identities=20%  Similarity=0.270  Sum_probs=62.9

Q ss_pred             CCCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689          155 DTVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       155 ~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~  225 (420)
                      +..|+++.||||||+++++ |.|+++++  ++|++.|+|+|+|+|. ++.|.|.|||+|||+||+.||..|..
T Consensus         5 ~~k~Pvs~L~E~~q~~~~~-~~y~~~~~~G~~h~~~F~~~v~v~~~-~~~g~G~SKK~Aeq~AA~~al~~L~~   75 (76)
T d1ekza_           5 DKKSPISQVHEIGIKRNMT-VHFKVLREEGPAHMKNFITACIVGSI-VTEGEGNGKKVSKKRAAEKMLVELQK   75 (76)
T ss_dssp             CCSCHHHHHHHHHHHTTCC-CEEEESSSCCSSSCSCSSEEEEETTE-EEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred             CCCCHHHHHHHHHHhCCCC-CeEEEEEeeCCCCCeEEEEEEEEeee-EeeeccCcHHHHHHHHHHHHHHHHHc
Confidence            4579999999999999998 79998876  7999999999999885 67899999999999999999999964

>d1whna_ d.50.1.1 (A:) tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: tRNA-dihydrouridine synthase 2-like, Dus2l (2310016k04Rik)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.60  E-value=1e-15  Score=132.12  Aligned_cols=70  Identities=29%  Similarity=0.288  Sum_probs=64.1

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeecCCCCCeEEEEEEECCEEeeeeee-cCHHHHHHHHHHHHHHHHHhh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQSEALLPVFVSSLVFNGVTYTGEPG-RSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~p~H~~~F~~~V~I~Gk~~~~G~G-~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      ..|||++||||||++++.+|.|+++.. .|++.|+|+|.|+|+.|..|.| +|||+|||+||+.||+.|...
T Consensus        25 ~~~pKs~LqE~~Qk~~~~~P~Y~~~~~-~~~~~F~~~V~v~g~~~~s~~g~~SKK~AEq~AA~~AL~~Lg~~   95 (128)
T d1whna_          25 QITPKMCLLEWCRREKLPQPVYETVQR-TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP   95 (128)
T ss_dssp             TCCHHHHHHHHHHHTTCCCCCCCEEEC-SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred             CCCHHHHHHHHHHhcCCCCCeEEEeec-ccCCCCEEEEEECCeEeeccCCcccHHHHHHHHHHHHHHHhCCC
Confidence            468999999999999999999998876 6889999999999999998776 899999999999999999543

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=9.2e-16  Score=129.83  Aligned_cols=75  Identities=21%  Similarity=0.154  Sum_probs=66.0

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEE-----CCEEeecCCccccchHHHHHHHHHHHHHHHhccc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSV-----DGVTYTSPNTFSHRKAAEQDVAKIALECISKKIK  145 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V-----~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~~  145 (420)
                      ..|||+.||||||++++. |.|++...||+|.+.|+|+|.|     ++..++.| .|+|||+|||+||+.||+.|...+.
T Consensus        25 ~~n~Ks~LqE~~Qk~k~~-p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G-~G~sKK~AEq~AA~~~l~~L~~~g~  102 (113)
T d1uila_          25 LENAKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFARE-HGSNKKLAAQSCALSLVRQLYHLGV  102 (113)
T ss_dssp             HHHHHHHHHHHHHHSCCC-CCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEEC-CCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred             ccCHHHHHHHHHHhCCCC-CceEEeeeccCCCCeEEEEEEEeeeccCCeEEeec-ccchHHHHHHHHHHHHHHHHHHcCC
Confidence            358999999999999885 8999877999999999999999     56666776 5999999999999999999988765


Q ss_pred             CC
Q 014689          146 DE  147 (420)
Q Consensus       146 ~E  147 (420)
                      .+
T Consensus       103 i~  104 (113)
T d1uila_         103 IE  104 (113)
T ss_dssp             SC
T ss_pred             cC
Confidence            44

>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: ATP-dependent RNA helicase A, Dhx9
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=1.3e-15  Score=128.90  Aligned_cols=68  Identities=24%  Similarity=0.296  Sum_probs=61.5

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEE-----CCEEeeeeeecCHHHHHHHHHHHHHHHHHhh
Q 014689          158 FCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVF-----NGVTYTGEPGRSKKEAEQLAARAVIRTLLVT  226 (420)
Q Consensus       158 n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I-----~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~  226 (420)
                      |+|+.||||||++++. |.|++... ++|.+.|+|+|.|     ++..++.|.|+|||+|||.||+.||..|...
T Consensus        27 n~Ks~LqE~~Qk~k~~-p~Y~i~~~Gp~H~~~F~~~v~i~~~~~~~~~~~~G~G~sKK~AEq~AA~~~l~~L~~~  100 (113)
T d1uila_          27 NAKARLNQYFQKEKIQ-GEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL  100 (113)
T ss_dssp             HHHHHHHHHHHHSCCC-CCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhCCCC-CceEEeeeccCCCCeEEEEEEEeeeccCCeEEeecccchHHHHHHHHHHHHHHHHHHc
Confidence            7899999999999986 89997655 7999999999999     5677788999999999999999999999754

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=5.5e-15  Score=115.16  Aligned_cols=67  Identities=25%  Similarity=0.198  Sum_probs=59.8

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhc
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKK  143 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~  143 (420)
                      ..+||++.|||||++     +.|+++. +||+|.+.|+++|.|+|..| .| .|+|||+||++||+.||+.|...
T Consensus         2 ~~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g-~G~SKK~Ak~~AA~~aL~~L~~~   69 (71)
T d2b7va1           2 SGKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EG-SGRNKKLAKARAAQSALATVFNL   69 (71)
T ss_dssp             CSSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-EE-EESSHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHccC-----CeEEEeeeeCCCCCCeEEEEEEECCEEE-Ee-cCCCHHHHHHHHHHHHHHHHHcc
Confidence            468999999999863     4799887 89999999999999999998 55 69999999999999999998753

>d2b7va1 d.50.1.1 (A:1-71) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.50  E-value=1.5e-14  Score=112.70  Aligned_cols=64  Identities=30%  Similarity=0.312  Sum_probs=57.8

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~  225 (420)
                      +.|+++.|||||++     +.|+++..  ++|++.|+|.|.|+|..| .|.|+|||+||++||+.||..|.+
T Consensus         3 ~Knpv~~L~E~~~~-----~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Ak~~AA~~aL~~L~~   68 (71)
T d2b7va1           3 GKNPVMILNELRPG-----LKYDFLSESGESHAKSFVMSVVVDGQFF-EGSGRNKKLAKARAAQSALATVFN   68 (71)
T ss_dssp             SSCHHHHHHHHCCS-----CEEEEEECCCCTTTCCEEEEEECSSCEE-EEEESSHHHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHccC-----CeEEEeeeeCCCCCCeEEEEEEECCEEE-EecCCCHHHHHHHHHHHHHHHHHc
Confidence            46899999999863     48998765  799999999999999988 799999999999999999999975

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.50  E-value=1.7e-14  Score=114.80  Aligned_cols=72  Identities=21%  Similarity=0.144  Sum_probs=62.4

Q ss_pred             CCCCCChhHHHHHHHHHcCCCCCcEEEeec-CCCCCeEEEEEEEC-CEEeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689          153 NQDTVFCKSILNEFAVKMNLELPAYSTRQS-EALLPVFVSSLVFN-GVTYTGEPGRSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       153 ~e~~~n~Ks~LqE~cQk~~~~lP~Y~~~~~-p~H~~~F~~~V~I~-Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~  225 (420)
                      ++...|+|+.|+||||+.++. |.|+++.. ++|...|++.|.|. |..++.|.|+|||+|||+||+.||+.+..
T Consensus         2 ~~id~~~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g~g~SKK~AEq~AA~~aL~~~~~   75 (81)
T d1t4oa_           2 DKLDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKM   75 (81)
T ss_dssp             CCCCTTHHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred             CccccCHHHHHHHHHhcCCCC-cEEEEeccCCCCCCCEEEEEEEecCceEEecccchhhHHHHHHHHHHHHhccH
Confidence            345679999999999999997 99999987 57777888888874 57778899999999999999999988754

>d1t4oa_ d.50.1.1 (A:) RNase III, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: RNase III, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=2.3e-14  Score=114.02  Aligned_cols=71  Identities=15%  Similarity=0.042  Sum_probs=60.2

Q ss_pred             CCCChHHHHHHHHHHcCCCCCeEEEeccCCCCCCeEEEEEEEC-CEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           70 EHLMHKNRLQEHAQRSGIPLPVYQSHNEGFQHAPKFRASVSVD-GVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        70 ~~~npKS~LQE~cQK~g~~lP~Yev~~eGP~H~p~FtvtV~V~-G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      .++|+|+.||||||+.|+. |.|+++..|..|+..|.+.|.+. |..++.| .|+|||+|||+||+.||+.+..
T Consensus         4 id~~~K~~L~e~~~~~g~~-P~Y~~~~~~~~~~~~f~v~~~v~~~~~~~~g-~g~SKK~AEq~AA~~aL~~~~~   75 (81)
T d1t4oa_           4 LDMNAKRQLYSLIGYASLR-LHYVTVKKPTAVDPNSIVECRVGDGTVLGTG-VGRNIKIAGIRAAENALRDKKM   75 (81)
T ss_dssp             CCTTHHHHHHHHHCCGGGC-CEEEEEECCCSSCCCEEEEEECTTCCEEEEE-EESSHHHHHHHHHHHHHHCHHH
T ss_pred             cccCHHHHHHHHHhcCCCC-cEEEEeccCCCCCCCEEEEEEEecCceEEec-ccchhhHHHHHHHHHHHHhccH
Confidence            4689999999999999986 99999997666667788888874 5666666 5999999999999999987764

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.35  E-value=7.5e-13  Score=103.31  Aligned_cols=62  Identities=27%  Similarity=0.320  Sum_probs=52.4

Q ss_pred             ChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHh
Q 014689          158 FCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLV  225 (420)
Q Consensus       158 n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~  225 (420)
                      |+++.|+|+     ...|.|+++.+  ++|++.|+|.|+|+|+.| .|.|+|||+||++||+.||+.|..
T Consensus         8 ~~l~~L~e~-----~~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g~G~SKK~Aeq~AA~~aL~~l~~   71 (73)
T d2b7ta1           8 NALMQLNEI-----KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             HHHHHHHHH-----CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHhc-----CCCCEEEEEEeeCCCCCceEEEEEEECCEEE-EcCCCcHHHHHHHHHHHHHHHHhh
Confidence            455555554     24579999876  799999999999999988 799999999999999999999854

>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: dsRNA-specific editase 1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=1.1e-12  Score=102.46  Aligned_cols=66  Identities=29%  Similarity=0.340  Sum_probs=53.7

Q ss_pred             ChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHh
Q 014689           73 MHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISK  142 (420)
Q Consensus        73 npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~  142 (420)
                      ++|+.|+++.+.+  ..+.|+++. +|++|++.|++.|.|+|..| .| .|+|||+||++||+.||+.|..
T Consensus         5 ~pK~~l~~L~e~~--~~~~y~~~~~~G~~h~~~F~~~v~v~~~~~-~g-~G~SKK~Aeq~AA~~aL~~l~~   71 (73)
T d2b7ta1           5 LPKNALMQLNEIK--PGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EG-SGPTKKKAKLHAAEKALRSFVQ   71 (73)
T ss_dssp             SSHHHHHHHHHHC--SCCEEEEEEEECSSSSCEEEEEEESSSSEE-EE-EESSHHHHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHhcC--CCCEEEEEEeeCCCCCceEEEEEEECCEEE-Ec-CCCcHHHHHHHHHHHHHHHHhh
Confidence            3444444443332  457999888 79999999999999999988 56 6999999999999999999865

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=1.4e-12  Score=104.38  Aligned_cols=66  Identities=26%  Similarity=0.273  Sum_probs=56.9

Q ss_pred             CCChhHHHHHHHHHcCCCCCcEEEeec--CCCCCeEEEEEEECCEEeeeeeecCHHHHHHHHHHHHHHHHHhhc
Q 014689          156 TVFCKSILNEFAVKMNLELPAYSTRQS--EALLPVFVSSLVFNGVTYTGEPGRSKKEAEQLAARAVIRTLLVTS  227 (420)
Q Consensus       156 ~~n~Ks~LqE~cQk~~~~lP~Y~~~~~--p~H~~~F~~~V~I~Gk~~~~G~G~SKK~AKq~AA~~AL~~L~~~s  227 (420)
                      ..|+++.|||+.     +.|.|+++.+  ++|++.|+|.|.|+|..| .|.|+|||+|||+||+.||+.|+...
T Consensus        11 ~~n~~~~L~e~~-----~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g~G~SKK~Aeq~AA~~aL~~L~~~~   78 (84)
T d2dmya1          11 LMNALMRLNQIR-----PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYPT   78 (84)
T ss_dssp             CTHHHHHHHHHS-----CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCCC
T ss_pred             ccCHHHHHHHhC-----CCCeEEEEEeeCCCCCCeEEEEEEECCEEE-EcCCCCHHHHHHHHHHHHHHHhCCCC
Confidence            457888888872     5579999766  799999999999999887 69999999999999999999997544

>d2dmya1 d.50.1.1 (A:8-91) Spermatid perinuclear RNA-binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: dsRBD-like
superfamily: dsRNA-binding domain-like
family: Double-stranded RNA-binding domain (dsRBD)
domain: Spermatid perinuclear RNA-binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.1e-12  Score=105.00  Aligned_cols=67  Identities=31%  Similarity=0.371  Sum_probs=57.9

Q ss_pred             CCChHHHHHHHHHHcCCCCCeEEEec-cCCCCCCeEEEEEEECCEEeecCCccccchHHHHHHHHHHHHHHHhcc
Q 014689           71 HLMHKNRLQEHAQRSGIPLPVYQSHN-EGFQHAPKFRASVSVDGVTYTSPNTFSHRKAAEQDVAKIALECISKKI  144 (420)
Q Consensus        71 ~~npKS~LQE~cQK~g~~lP~Yev~~-eGP~H~p~FtvtV~V~G~~~~~Gg~GsSKKeAEq~AAk~AL~~L~~~~  144 (420)
                      .+|+++.|+|+.     +.|.|+++. +||+|++.|++.|.|+|..| .| .|+|||+|||+||+.||+.|....
T Consensus        11 ~~n~~~~L~e~~-----~~~~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~g-~G~SKK~Aeq~AA~~aL~~L~~~~   78 (84)
T d2dmya1          11 LMNALMRLNQIR-----PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EA-SGPSKKTAKLHVAVKVLQAMGYPT   78 (84)
T ss_dssp             CTHHHHHHHHHS-----CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EE-EESSHHHHHHHHHHHHHHHHTCCC
T ss_pred             ccCHHHHHHHhC-----CCCeEEEEEeeCCCCCCeEEEEEEECCEEE-Ec-CCCCHHHHHHHHHHHHHHHhCCCC
Confidence            468888888872     457899877 79999999999999999988 45 699999999999999999997544