Citrus Sinensis ID: 014706
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 420 | 2.2.26 [Sep-21-2011] | |||||||
| Q76FS5 | 417 | Solanesyl diphosphate syn | yes | no | 0.980 | 0.988 | 0.716 | 1e-169 | |
| Q8S948 | 406 | Solanesyl diphosphate syn | no | no | 0.952 | 0.985 | 0.705 | 1e-165 | |
| Q75HZ9 | 403 | Solanesyl-diphosphate syn | yes | no | 0.928 | 0.967 | 0.665 | 1e-151 | |
| Q0INZ4 | 372 | Probable solanesyl-diphos | no | no | 0.771 | 0.870 | 0.796 | 1e-151 | |
| P72580 | 323 | Prenyl transferase OS=Syn | N/A | no | 0.764 | 0.993 | 0.567 | 1e-100 | |
| Q1XDL8 | 323 | Prenyl transferase OS=Por | N/A | no | 0.754 | 0.981 | 0.5 | 1e-92 | |
| P31171 | 323 | Prenyl transferase OS=Cya | N/A | no | 0.761 | 0.990 | 0.557 | 1e-92 | |
| P51268 | 323 | Prenyl transferase OS=Por | N/A | no | 0.757 | 0.984 | 0.485 | 1e-90 | |
| Q9TLS1 | 323 | Prenyl transferase OS=Cya | N/A | no | 0.742 | 0.965 | 0.485 | 5e-82 | |
| Q653T6 | 430 | Solanesyl-diphosphate syn | no | no | 0.716 | 0.7 | 0.423 | 3e-65 |
| >sp|Q76FS5|SPS2_ARATH Solanesyl diphosphate synthase 2, chloroplastic OS=Arabidopsis thaliana GN=SPS2 PE=1 SV=1 | Back alignment and function desciption |
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Score = 595 bits (1534), Expect = e-169, Method: Compositional matrix adjust.
Identities = 301/420 (71%), Positives = 353/420 (84%), Gaps = 8/420 (1%)
Query: 2 MSMTSHNLDFGRSVLDLVACGCSSSAS-IHRSSVRKIAMTGSRKSNRDCGARRLVCCRQN 60
M M+ N+D G SVLD S+S + +S + + M G R C LV R++
Sbjct: 1 MMMSCRNIDLGTSVLDHSCSSSSTSRRFLFGNSSKTVCMIGGRS----C-VGNLVFLRRD 55
Query: 61 LARCRVYSTKTPE-TLLN-VGQIPPAVLNLKEKSRSPISLANIFEVVAEDLQTLNQNLKS 118
LA CR K+ E +L+N +GQ +LNL+++SR PISL +FEVVA+DLQ LN NL S
Sbjct: 56 LATCRAVPAKSKENSLVNGIGQDQTVMLNLRQESRKPISLETLFEVVADDLQRLNDNLLS 115
Query: 119 IVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIH 178
IVGAENPVL+SAAEQIF AGGKR+RP LVFLVSRATAEL GLKELT +HRRL EIIEMIH
Sbjct: 116 IVGAENPVLISAAEQIFSAGGKRMRPGLVFLVSRATAELAGLKELTVEHRRLGEIIEMIH 175
Query: 179 TASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQ 238
TASLIHDDVLDESDMRRG+ETVH+L+GTRVAVLAGDFMFAQ+SWYLANLENLEVIKLISQ
Sbjct: 176 TASLIHDDVLDESDMRRGRETVHELFGTRVAVLAGDFMFAQASWYLANLENLEVIKLISQ 235
Query: 239 VIKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMY 298
VIKDFASGEIKQASSLFDCD++L++Y++KSYYKTASL+AASTKGAAIFS V+ +++QMY
Sbjct: 236 VIKDFASGEIKQASSLFDCDVKLDDYMLKSYYKTASLVAASTKGAAIFSKVESKVAEQMY 295
Query: 299 EYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESE 358
++G+NLGLSFQ+VDDILDFTQS EQLGKPAA+DLAKGN+TAPVIFALE EP+LREIIESE
Sbjct: 296 QFGKNLGLSFQVVDDILDFTQSTEQLGKPAANDLAKGNITAPVIFALENEPRLREIIESE 355
Query: 359 FCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 418
FCE GSL+EAI++V+ GGI++AQELAKEKA LA+ NL+CLPRS FR ALEDMVMFNLER
Sbjct: 356 FCEPGSLEEAIEIVRNRGGIKKAQELAKEKAELALKNLNCLPRSGFRSALEDMVMFNLER 415
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Involved in providing solanesyl diphosphate for plastoquinone-9 formation. Prefers geranylgeranyl diphosphate to farnesyl diphosphate as substrate. No activity with geranyl diphosphate or dimethylallyl diphosphate as substrate. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 8EC: 5 |
| >sp|Q8S948|SPS1_ARATH Solanesyl diphosphate synthase 1 OS=Arabidopsis thaliana GN=SPS1 PE=1 SV=1 | Back alignment and function description |
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| >sp|Q75HZ9|SPS2_ORYSJ Solanesyl-diphosphate synthase 2, chloroplastic OS=Oryza sativa subsp. japonica GN=SPS2 PE=1 SV=2 | Back alignment and function description |
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| >sp|Q0INZ4|SPS3_ORYSJ Probable solanesyl-diphosphate synthase 3, chloroplastic (Fragment) OS=Oryza sativa subsp. japonica GN=SPS3 PE=3 SV=1 | Back alignment and function description |
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| >sp|P72580|PREA_SYNY3 Prenyl transferase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=preA PE=3 SV=2 | Back alignment and function description |
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| >sp|Q1XDL8|PREA_PORYE Prenyl transferase OS=Porphyra yezoensis GN=preA PE=3 SV=1 | Back alignment and function description |
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| >sp|P31171|PREA_CYAPA Prenyl transferase OS=Cyanophora paradoxa GN=preA PE=3 SV=1 | Back alignment and function description |
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| >sp|P51268|PREA_PORPU Prenyl transferase OS=Porphyra purpurea GN=preA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q9TLS1|PREA_CYACA Prenyl transferase OS=Cyanidium caldarium GN=preA PE=3 SV=1 | Back alignment and function description |
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| >sp|Q653T6|SPS1_ORYSJ Solanesyl-diphosphate synthase 1, mitochondrial OS=Oryza sativa subsp. japonica GN=SPS1 PE=1 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 420 | ||||||
| 224061363 | 420 | predicted protein [Populus trichocarpa] | 0.995 | 0.995 | 0.821 | 0.0 | |
| 255575167 | 420 | solanesyl diphosphate synthase, putative | 0.995 | 0.995 | 0.823 | 0.0 | |
| 90200410 | 418 | solanesyl diphosphate synthase [Hevea br | 0.992 | 0.997 | 0.821 | 0.0 | |
| 225461848 | 421 | PREDICTED: prenyl transferase-like [Viti | 0.995 | 0.992 | 0.797 | 0.0 | |
| 147844134 | 421 | hypothetical protein VITISV_004505 [Viti | 0.995 | 0.992 | 0.794 | 0.0 | |
| 302142790 | 420 | unnamed protein product [Vitis vinifera] | 0.992 | 0.992 | 0.796 | 0.0 | |
| 356549586 | 426 | PREDICTED: prenyl transferase-like isofo | 0.990 | 0.976 | 0.748 | 1e-179 | |
| 356549588 | 419 | PREDICTED: prenyl transferase-like isofo | 0.985 | 0.988 | 0.751 | 1e-179 | |
| 449438941 | 421 | PREDICTED: solanesyl diphosphate synthas | 0.992 | 0.990 | 0.742 | 1e-177 | |
| 449483136 | 421 | PREDICTED: solanesyl diphosphate synthas | 0.992 | 0.990 | 0.742 | 1e-177 |
| >gi|224061363|ref|XP_002300442.1| predicted protein [Populus trichocarpa] gi|222847700|gb|EEE85247.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Score = 710 bits (1832), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 344/419 (82%), Positives = 382/419 (91%), Gaps = 1/419 (0%)
Query: 2 MSMTSHNLDFGRSVLDLVACGCSSSASIHRSSVRKIAMTGSRKSNRDCGARRLVCCRQNL 61
MSMT HNLDFGR+ LDLVACGCSS+ASI R SVR A + S+ NRD G+RRLVC R+++
Sbjct: 1 MSMTCHNLDFGRAKLDLVACGCSSNASIDRYSVRNYAKSVSKSCNRDYGSRRLVCSRRDI 60
Query: 62 ARCRVYSTKTPETL-LNVGQIPPAVLNLKEKSRSPISLANIFEVVAEDLQTLNQNLKSIV 120
ARCRV TKTPETL V + P +L LK+ SR IS+ N+FEVVA+DLQTLNQNL+SIV
Sbjct: 61 ARCRVSPTKTPETLPAGVAEGPAGLLKLKKDSRESISITNLFEVVADDLQTLNQNLQSIV 120
Query: 121 GAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTA 180
GAENPVLMSAAEQIFGAGGKR+RPALVFLVSRATAE+VG+KELTT+HRRLAEIIEMIHTA
Sbjct: 121 GAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAEVVGMKELTTEHRRLAEIIEMIHTA 180
Query: 181 SLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVI 240
SLIHDDVLDESDMRRG+ETVHQLYGTRVAVLAGDFMFAQSSWYLANLEN+EVIKLISQVI
Sbjct: 181 SLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLENIEVIKLISQVI 240
Query: 241 KDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEY 300
KDFASGEIKQASSLFDCD+ELEEYLIKSYYKTASLIAASTKGAAIFSGVD S+S QMY+Y
Sbjct: 241 KDFASGEIKQASSLFDCDVELEEYLIKSYYKTASLIAASTKGAAIFSGVDSSVSMQMYDY 300
Query: 301 GRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFC 360
G+NLGLSFQ+VDDILDFTQSAEQLGKPA SDLAKGNLTAPVIFALE+ PKLREIIESEFC
Sbjct: 301 GKNLGLSFQVVDDILDFTQSAEQLGKPAGSDLAKGNLTAPVIFALEQSPKLREIIESEFC 360
Query: 361 ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLERF 419
E+GS+DEAI+LVK+SGGIE AQELAKEKA+LAI NL CLP+ ++ ALE+MV++NLER
Sbjct: 361 ESGSIDEAIELVKSSGGIERAQELAKEKADLAIQNLRCLPQGSYQSALEEMVLYNLERI 419
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Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255575167|ref|XP_002528488.1| solanesyl diphosphate synthase, putative [Ricinus communis] gi|223532097|gb|EEF33905.1| solanesyl diphosphate synthase, putative [Ricinus communis] | Back alignment and taxonomy information |
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| >gi|90200410|gb|ABD92707.1| solanesyl diphosphate synthase [Hevea brasiliensis] | Back alignment and taxonomy information |
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| >gi|225461848|ref|XP_002285665.1| PREDICTED: prenyl transferase-like [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|147844134|emb|CAN80568.1| hypothetical protein VITISV_004505 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|302142790|emb|CBI20085.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|356549586|ref|XP_003543173.1| PREDICTED: prenyl transferase-like isoform 1 [Glycine max] | Back alignment and taxonomy information |
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| >gi|356549588|ref|XP_003543174.1| PREDICTED: prenyl transferase-like isoform 2 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449438941|ref|XP_004137246.1| PREDICTED: solanesyl diphosphate synthase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449483136|ref|XP_004156502.1| PREDICTED: solanesyl diphosphate synthase 1-like [Cucumis sativus] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 420 | ||||||
| TAIR|locus:2020362 | 417 | SPS2 "solanesyl diphosphate sy | 0.983 | 0.990 | 0.711 | 9.8e-151 | |
| TAIR|locus:2202940 | 406 | SPS1 "solanesyl diphosphate sy | 0.952 | 0.985 | 0.715 | 3.2e-145 | |
| CGD|CAL0005672 | 510 | orf19.7478 [Candida albicans ( | 0.390 | 0.321 | 0.404 | 6.5e-59 | |
| TAIR|locus:2062315 | 422 | GPS1 "geranyl diphosphate synt | 0.792 | 0.789 | 0.390 | 1.7e-57 | |
| ZFIN|ZDB-GENE-030131-4430 | 411 | pdss1 "prenyl (decaprenyl) dip | 0.771 | 0.788 | 0.400 | 2.3e-55 | |
| DICTYBASE|DDB_G0280293 | 456 | coq1 "trans-prenyltransferase" | 0.709 | 0.653 | 0.409 | 1.3e-54 | |
| UNIPROTKB|E1BZW8 | 366 | PDSS1 "Uncharacterized protein | 0.754 | 0.866 | 0.386 | 1.1e-53 | |
| FB|FBgn0051005 | 436 | qless "qless" [Drosophila mela | 0.728 | 0.701 | 0.377 | 1.5e-53 | |
| UNIPROTKB|F1RTW8 | 410 | PDSS1 "Uncharacterized protein | 0.757 | 0.775 | 0.366 | 1.2e-51 | |
| UNIPROTKB|F6RJN8 | 418 | PDSS1 "Uncharacterized protein | 0.742 | 0.746 | 0.360 | 1.9e-51 |
| TAIR|locus:2020362 SPS2 "solanesyl diphosphate synthase 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1471 (522.9 bits), Expect = 9.8e-151, P = 9.8e-151
Identities = 298/419 (71%), Positives = 346/419 (82%)
Query: 2 MSMTSHNLDFGRSVLDLVACGCXXXXXXXXXXVRKIAMTGSRKSNRDCGARRLVCCRQNL 61
M M+ N+D G SVLD C + T R C LV R++L
Sbjct: 1 MMMSCRNIDLGTSVLDH---SCSSSSTSRRFLFGNSSKTVCMIGGRSC-VGNLVFLRRDL 56
Query: 62 ARCRVYSTKTPE-TLLN-VGQIPPAVLNLKEKSRSPISLANIFEVVAEDLQTLNQNLKSI 119
A CR K+ E +L+N +GQ +LNL+++SR PISL +FEVVA+DLQ LN NL SI
Sbjct: 57 ATCRAVPAKSKENSLVNGIGQDQTVMLNLRQESRKPISLETLFEVVADDLQRLNDNLLSI 116
Query: 120 VGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHT 179
VGAENPVL+SAAEQIF AGGKR+RP LVFLVSRATAEL GLKELT +HRRL EIIEMIHT
Sbjct: 117 VGAENPVLISAAEQIFSAGGKRMRPGLVFLVSRATAELAGLKELTVEHRRLGEIIEMIHT 176
Query: 180 ASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQV 239
ASLIHDDVLDESDMRRG+ETVH+L+GTRVAVLAGDFMFAQ+SWYLANLENLEVIKLISQV
Sbjct: 177 ASLIHDDVLDESDMRRGRETVHELFGTRVAVLAGDFMFAQASWYLANLENLEVIKLISQV 236
Query: 240 IKDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYE 299
IKDFASGEIKQASSLFDCD++L++Y++KSYYKTASL+AASTKGAAIFS V+ +++QMY+
Sbjct: 237 IKDFASGEIKQASSLFDCDVKLDDYMLKSYYKTASLVAASTKGAAIFSKVESKVAEQMYQ 296
Query: 300 YGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEF 359
+G+NLGLSFQ+VDDILDFTQS EQLGKPAA+DLAKGN+TAPVIFALE EP+LREIIESEF
Sbjct: 297 FGKNLGLSFQVVDDILDFTQSTEQLGKPAANDLAKGNITAPVIFALENEPRLREIIESEF 356
Query: 360 CETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 418
CE GSL+EAI++V+ GGI++AQELAKEKA LA+ NL+CLPRS FR ALEDMVMFNLER
Sbjct: 357 CEPGSLEEAIEIVRNRGGIKKAQELAKEKAELALKNLNCLPRSGFRSALEDMVMFNLER 415
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| TAIR|locus:2202940 SPS1 "solanesyl diphosphate synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| CGD|CAL0005672 orf19.7478 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
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| TAIR|locus:2062315 GPS1 "geranyl diphosphate synthase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-4430 pdss1 "prenyl (decaprenyl) diphosphate synthase, subunit 1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
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| DICTYBASE|DDB_G0280293 coq1 "trans-prenyltransferase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E1BZW8 PDSS1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| FB|FBgn0051005 qless "qless" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1RTW8 PDSS1 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F6RJN8 PDSS1 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8S948 | SPS1_ARATH | 2, ., 5, ., 1, ., 8, 5 | 0.7054 | 0.9523 | 0.9852 | no | no |
| Q75HZ9 | SPS2_ORYSJ | 2, ., 5, ., 1, ., 8, 4 | 0.6650 | 0.9285 | 0.9677 | yes | no |
| Q76FS5 | SPS2_ARATH | 2, ., 5, ., 1, ., 8, 5 | 0.7166 | 0.9809 | 0.9880 | yes | no |
| Q33DR2 | DPS1_MOUSE | 2, ., 5, ., 1, ., 9, 1 | 0.3362 | 0.8095 | 0.8312 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 4th Layer | 2.5.1.10 | LOW CONFIDENCE prediction! |
| 4th Layer | 2.5.1.1 | LOW CONFIDENCE prediction! |
| 3rd Layer | 2.5.1 | 0.691 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00012778 | octaprenyl-diphosphate synthase (420 aa) | ||||||
(Populus trichocarpa) | ||||||||
| Sorry, there are no predicted associations at the current settings. |
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 420 | |||
| PLN02857 | 416 | PLN02857, PLN02857, octaprenyl-diphosphate synthas | 0.0 | |
| TIGR02749 | 322 | TIGR02749, prenyl_cyano, solanesyl diphosphate syn | 0.0 | |
| CHL00151 | 323 | CHL00151, preA, prenyl transferase; Reviewed | 1e-138 | |
| COG0142 | 322 | COG0142, IspA, Geranylgeranyl pyrophosphate syntha | 1e-93 | |
| cd00685 | 259 | cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphat | 1e-89 | |
| PLN02890 | 422 | PLN02890, PLN02890, geranyl diphosphate synthase | 4e-82 | |
| TIGR02748 | 319 | TIGR02748, GerC3_HepT, heptaprenyl diphosphate syn | 5e-78 | |
| pfam00348 | 260 | pfam00348, polyprenyl_synt, Polyprenyl synthetase | 2e-73 | |
| PRK10888 | 323 | PRK10888, PRK10888, octaprenyl diphosphate synthas | 3e-63 | |
| cd00867 | 236 | cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate S | 8e-61 | |
| cd00385 | 243 | cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynth | 6e-48 | |
| PRK10581 | 299 | PRK10581, PRK10581, geranyltranstransferase; Provi | 9e-24 |
| >gnl|CDD|215462 PLN02857, PLN02857, octaprenyl-diphosphate synthase | Back alignment and domain information |
|---|
Score = 712 bits (1840), Expect = 0.0
Identities = 317/418 (75%), Positives = 354/418 (84%), Gaps = 5/418 (1%)
Query: 2 MSMTSHNLDFGRSVLDLVACGCSSSASIHRSSVRKIAMTGSRKSNRDCGARRLVCCRQNL 61
MSM+ N+D G S LVACGCSS+AS R VR A + +R + V R+++
Sbjct: 1 MSMSCRNIDLGTS---LVACGCSSNASSRRRVVRNGATPVCKSCSRSYASSL-VTSRRDI 56
Query: 62 ARCRVYSTKTPETLLN-VGQIPPAVLNLKEKSRSPISLANIFEVVAEDLQTLNQNLKSIV 120
RCRV S +L+N +GQ P L+LK +S+ PISL+ +FE VA+DLQ LN NL+SIV
Sbjct: 57 GRCRVVSPSPETSLVNGIGQGPTVALDLKAESKEPISLSELFEPVADDLQQLNDNLQSIV 116
Query: 121 GAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTA 180
GAENPVLMSAAEQIFGAGGKR+RPALVFLVSRATAEL GLKELTT+HRRLAEI EMIHTA
Sbjct: 117 GAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAELAGLKELTTEHRRLAEITEMIHTA 176
Query: 181 SLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVI 240
SLIHDDVLDESDMRRG+ETVHQLYGTRVAVLAGDFMFAQSSWYLANL+NLEVIKLISQVI
Sbjct: 177 SLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVI 236
Query: 241 KDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEY 300
KDFASGEIKQASSLFDCD+ L+EYL+KSYYKTASLIAASTK AAIFSGVD S+ +QMYEY
Sbjct: 237 KDFASGEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEY 296
Query: 301 GRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFC 360
G+NLGL+FQ+VDDILDFTQS EQLGKPA SDLAKGNLTAPVIFALEKEP+LREIIESEFC
Sbjct: 297 GKNLGLAFQVVDDILDFTQSTEQLGKPAGSDLAKGNLTAPVIFALEKEPELREIIESEFC 356
Query: 361 ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMVMFNLER 418
E GSL+EAI+LV GGIE AQELAKEKA+LAI NL CLPR FR +LEDMV +NLER
Sbjct: 357 EEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLPRGAFRSSLEDMVDYNLER 414
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Length = 416 |
| >gnl|CDD|131796 TIGR02749, prenyl_cyano, solanesyl diphosphate synthase | Back alignment and domain information |
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| >gnl|CDD|164542 CHL00151, preA, prenyl transferase; Reviewed | Back alignment and domain information |
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| >gnl|CDD|223220 COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
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| >gnl|CDD|173833 cd00685, Trans_IPPS_HT, Trans-Isoprenyl Diphosphate Synthases, head-to-tail | Back alignment and domain information |
|---|
| >gnl|CDD|178478 PLN02890, PLN02890, geranyl diphosphate synthase | Back alignment and domain information |
|---|
| >gnl|CDD|131795 TIGR02748, GerC3_HepT, heptaprenyl diphosphate synthase component II | Back alignment and domain information |
|---|
| >gnl|CDD|215873 pfam00348, polyprenyl_synt, Polyprenyl synthetase | Back alignment and domain information |
|---|
| >gnl|CDD|182813 PRK10888, PRK10888, octaprenyl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >gnl|CDD|173836 cd00867, Trans_IPPS, Trans-Isoprenyl Diphosphate Synthases | Back alignment and domain information |
|---|
| >gnl|CDD|173830 cd00385, Isoprenoid_Biosyn_C1, Isoprenoid Biosynthesis enzymes, Class 1 | Back alignment and domain information |
|---|
| >gnl|CDD|182567 PRK10581, PRK10581, geranyltranstransferase; Provisional | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 420 | |||
| PLN02857 | 416 | octaprenyl-diphosphate synthase | 100.0 | |
| TIGR02749 | 322 | prenyl_cyano solanesyl diphosphate synthase. Membe | 100.0 | |
| PLN02890 | 422 | geranyl diphosphate synthase | 100.0 | |
| CHL00151 | 323 | preA prenyl transferase; Reviewed | 100.0 | |
| TIGR02748 | 319 | GerC3_HepT heptaprenyl diphosphate synthase compon | 100.0 | |
| PRK10888 | 323 | octaprenyl diphosphate synthase; Provisional | 100.0 | |
| COG0142 | 322 | IspA Geranylgeranyl pyrophosphate synthase [Coenzy | 100.0 | |
| KOG0776 | 384 | consensus Geranylgeranyl pyrophosphate synthase/Po | 100.0 | |
| PRK10581 | 299 | geranyltranstransferase; Provisional | 100.0 | |
| cd00685 | 259 | Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthase | 100.0 | |
| PF00348 | 260 | polyprenyl_synt: Polyprenyl synthetase; InterPro: | 100.0 | |
| cd00867 | 236 | Trans_IPPS Trans-Isoprenyl Diphosphate Synthases. | 100.0 | |
| KOG0711 | 347 | consensus Polyprenyl synthetase [Coenzyme transpor | 100.0 | |
| KOG0777 | 322 | consensus Geranylgeranyl pyrophosphate synthase/Po | 100.0 | |
| cd00385 | 243 | Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzym | 99.92 | |
| PF07307 | 212 | HEPPP_synt_1: Heptaprenyl diphosphate synthase (HE | 97.5 | |
| TIGR01559 | 336 | squal_synth farnesyl-diphosphate farnesyltransfera | 97.07 | |
| PF00494 | 267 | SQS_PSY: Squalene/phytoene synthase; InterPro: IPR | 96.53 | |
| PLN02632 | 334 | phytoene synthase | 96.04 | |
| TIGR03464 | 266 | HpnC squalene synthase HpnC. This family of genes | 95.81 | |
| cd00683 | 265 | Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthase | 95.53 | |
| TIGR03465 | 266 | HpnD squalene synthase HpnD. The genes of this fam | 94.44 | |
| cd00687 | 303 | Terpene_cyclase_nonplant_C1 Non-plant Terpene Cycl | 92.94 | |
| cd00868 | 284 | Terpene_cyclase_C1 Terpene cyclases, Class 1. Terp | 85.76 |
| >PLN02857 octaprenyl-diphosphate synthase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-88 Score=694.81 Aligned_cols=415 Identities=77% Similarity=1.126 Sum_probs=389.5
Q ss_pred CccccccccccccccchhcccCCCCcccchhhhhhHhhhhcccccccccccccccccccccceeeccCCCCccccc-ccC
Q 014706 2 MSMTSHNLDFGRSVLDLVACGCSSSASIHRSSVRKIAMTGSRKSNRDCGARRLVCCRQNLARCRVYSTKTPETLLN-VGQ 80 (420)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 80 (420)
|+|+|+|+|||++ +++|||||++.++|+.+|++++.+++.|+|+|+++ .++|||++++|+++++.+....++ ..+
T Consensus 1 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (416)
T PLN02857 1 MSMSCRNIDLGTS---LVACGCSSNASSRRRVVRNGATPVCKSCSRSYASS-LVTSRRDIGRCRVVSPSPETSLVNGIGQ 76 (416)
T ss_pred CCccccCCCCCcc---cccCCCccccccccccccccccccccccCcccccc-cchhccCcceeeccCCCCcccccCcccc
Confidence 8999999999999 66999999999999999999999999999999996 699999999999998855555666 466
Q ss_pred CCcccccccccccCcccHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCC
Q 014706 81 IPPAVLNLKEKSRSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGL 160 (420)
Q Consensus 81 ~~~~~~~l~~~~~~~~~~~~l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~ 160 (420)
.+.....++.....++++.++++.+.++++.|++.|.+.+....|.+.++++|++..||||+||+|++++++++++..|.
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~v~~~l~~~~~~~~~~l~~~~~~~~~~gGKriRP~Lvll~a~a~g~~~g~ 156 (416)
T PLN02857 77 GPTVALDLKAESKEPISLSELFEPVADDLQQLNDNLQSIVGAENPVLMSAAEQIFGAGGKRMRPALVFLVSRATAELAGL 156 (416)
T ss_pred ccHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHhCCCccHhHHHHHHHHHHhccccCC
Confidence 66666766777778899999999999999999999999999999999999999999999999999999999987765554
Q ss_pred ccccHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q 014706 161 KELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVI 240 (420)
Q Consensus 161 ~~~~~~~~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~ 240 (420)
+...++.+.+|+++||||+||||||||||+|++|||+||+|.+||++.|||+|||||++|++.++++.++++++++++++
T Consensus 157 ~~~~~~~~~lAaaiEliH~ASLIHDDI~D~s~~RRG~pt~h~~~G~~~AIlaGD~L~a~A~~~la~~~~~~~~~~~s~~~ 236 (416)
T PLN02857 157 KELTTEHRRLAEITEMIHTASLIHDDVLDESDMRRGKETVHQLYGTRVAVLAGDFMFAQSSWYLANLDNLEVIKLISQVI 236 (416)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHCccccCCcccCCCCCccccCCcceeeeHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 43456788999999999999999999999999999999999999999999999999999999999988899999999999
Q ss_pred HHHHhHHHHHhhhccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccc
Q 014706 241 KDFASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQS 320 (420)
Q Consensus 241 ~~l~~Ge~~q~~~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~ 320 (420)
.++++||+.|..+..+.+.++++|++++++|||+||+.+|++||+++|++++..+.+++||+++|+||||+||++||+++
T Consensus 237 ~~l~~Gei~q~~~~~~~~~s~~~Yl~~i~~KTa~L~~~a~~~gallaga~~~~~~~l~~fG~~LGiAFQI~DDiLD~~~~ 316 (416)
T PLN02857 237 KDFASGEIKQASSLFDCDVTLDEYLLKSYYKTASLIAASTKSAAIFSGVDSSVKEQMYEYGKNLGLAFQVVDDILDFTQS 316 (416)
T ss_pred HHHHhhHHHHHhcccCCCCCHHHHHHHHHHhHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 99999999998888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhCCCCcccccCCcccHHHHHHhhhChHHHHHHHhhcCCcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCC
Q 014706 321 AEQLGKPAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLP 400 (420)
Q Consensus 321 ~~~~GK~~g~DL~eGk~TlP~l~ale~~~~l~~~l~~~~~~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp 400 (420)
++.+|||.|+||++||+|+|++++++.+|+++.++.+.+.+++++++++++|+++|+++++++++++|.++|++.|+.||
T Consensus 317 ~~~~GK~~g~DL~eGK~TlPli~al~~~~~l~~~l~~~~~~~~~~~~~~~lv~~~Ggie~a~~~a~~~~~~A~~~L~~Lp 396 (416)
T PLN02857 317 TEQLGKPAGSDLAKGNLTAPVIFALEKEPELREIIESEFCEEGSLEEAIELVNEGGGIERAQELAKEKADLAIQNLECLP 396 (416)
T ss_pred HHHhCCCcchhhhcCCccHHHHHHHhcChHHHHHHhhccCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999989999999888888889999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHhccCC
Q 014706 401 RSPFRVALEDMVMFNLERFV 420 (420)
Q Consensus 401 ~~~~~~~L~~l~~~~~~R~~ 420 (420)
+++.++.|..|++|+++|++
T Consensus 397 ~~~~~~~L~~L~~~~~~R~~ 416 (416)
T PLN02857 397 RGAFRSSLEDMVDYNLERIY 416 (416)
T ss_pred CCHHHHHHHHHHHHHHhccC
Confidence 99999999999999999974
|
|
| >TIGR02749 prenyl_cyano solanesyl diphosphate synthase | Back alignment and domain information |
|---|
| >PLN02890 geranyl diphosphate synthase | Back alignment and domain information |
|---|
| >CHL00151 preA prenyl transferase; Reviewed | Back alignment and domain information |
|---|
| >TIGR02748 GerC3_HepT heptaprenyl diphosphate synthase component II | Back alignment and domain information |
|---|
| >PRK10888 octaprenyl diphosphate synthase; Provisional | Back alignment and domain information |
|---|
| >COG0142 IspA Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
| >KOG0776 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >PRK10581 geranyltranstransferase; Provisional | Back alignment and domain information |
|---|
| >cd00685 Trans_IPPS_HT Trans-Isoprenyl Diphosphate Synthases, head-to-tail | Back alignment and domain information |
|---|
| >PF00348 polyprenyl_synt: Polyprenyl synthetase; InterPro: IPR000092 A variety of isoprenoid compounds are synthesized by various organisms | Back alignment and domain information |
|---|
| >cd00867 Trans_IPPS Trans-Isoprenyl Diphosphate Synthases | Back alignment and domain information |
|---|
| >KOG0711 consensus Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >KOG0777 consensus Geranylgeranyl pyrophosphate synthase/Polyprenyl synthetase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
| >cd00385 Isoprenoid_Biosyn_C1 Isoprenoid Biosynthesis enzymes, Class 1 | Back alignment and domain information |
|---|
| >PF07307 HEPPP_synt_1: Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1; InterPro: IPR009920 This family contains subunit 1 of bacterial heptaprenyl diphosphate synthase (HEPPP synthase) (2 | Back alignment and domain information |
|---|
| >TIGR01559 squal_synth farnesyl-diphosphate farnesyltransferase | Back alignment and domain information |
|---|
| >PF00494 SQS_PSY: Squalene/phytoene synthase; InterPro: IPR002060 Squalene synthase 2 | Back alignment and domain information |
|---|
| >PLN02632 phytoene synthase | Back alignment and domain information |
|---|
| >TIGR03464 HpnC squalene synthase HpnC | Back alignment and domain information |
|---|
| >cd00683 Trans_IPPS_HH Trans-Isoprenyl Diphosphate Synthases, head-to-head | Back alignment and domain information |
|---|
| >TIGR03465 HpnD squalene synthase HpnD | Back alignment and domain information |
|---|
| >cd00687 Terpene_cyclase_nonplant_C1 Non-plant Terpene Cyclases, Class 1 | Back alignment and domain information |
|---|
| >cd00868 Terpene_cyclase_C1 Terpene cyclases, Class 1 | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 420 | ||||
| 3aq0_A | 348 | Ligand-Bound Form Of Arabidopsis MediumLONG-Chain L | 4e-63 | ||
| 3apz_A | 348 | Apo Form Of Arabidopsis MediumLONG-Chain Length Pre | 2e-62 | ||
| 3mzv_A | 341 | Crystal Structure Of A Decaprenyl Diphosphate Synth | 4e-41 | ||
| 3oyr_A | 345 | Crystal Structure Of Polyprenyl Synthase From Caulo | 6e-41 | ||
| 1wy0_A | 342 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 4e-37 | ||
| 3aqb_B | 325 | M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphospha | 9e-36 | ||
| 3lmd_A | 360 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 4e-32 | ||
| 3rmg_A | 334 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 1e-31 | ||
| 3kra_A | 295 | Mint Heterotetrameric Geranyl Pyrophosphate Synthas | 2e-26 | ||
| 3tc1_A | 315 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 6e-25 | ||
| 3n3d_A | 335 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 3e-24 | ||
| 3pko_A | 334 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 3e-24 | ||
| 3npk_A | 291 | The Crystal Structure Of Geranyltranstransferase Fr | 4e-24 | ||
| 3q1o_A | 310 | Crystal Structure Of Geranyltransferase From Helico | 1e-23 | ||
| 3llw_A | 311 | Crystal Structure Of Geranyltransferase From Helico | 1e-23 | ||
| 4dhd_A | 358 | Crystal Structure Of Isoprenoid Synthase A3msh1 (Ta | 1e-23 | ||
| 2j1p_A | 293 | Geranylgeranyl Diphosphate Synthase From Sinapis Al | 2e-23 | ||
| 3uca_A | 324 | Crystal Structure Of Isoprenoid Synthase (Target Ef | 8e-23 | ||
| 3nf2_A | 352 | Crystal Structure Of Polyprenyl Synthetase From Str | 4e-22 | ||
| 3ipi_A | 295 | Crystal Structure Of A Geranyltranstransferase From | 1e-21 | ||
| 2azl_A | 299 | Crystal Structure For The Mutant F117e Of Thermotog | 2e-21 | ||
| 1v4e_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 3e-21 | ||
| 1v4h_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 4e-21 | ||
| 1wkz_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 4e-21 | ||
| 1wl0_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 4e-21 | ||
| 1v4i_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 6e-21 | ||
| 1vg4_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 9e-21 | ||
| 1v4j_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 1e-20 | ||
| 1vg2_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 2e-20 | ||
| 1v4k_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 2e-20 | ||
| 1vg7_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 2e-20 | ||
| 1vg6_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 2e-20 | ||
| 1wl2_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 3e-20 | ||
| 1wl3_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 3e-20 | ||
| 1vg3_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 8e-20 | ||
| 4f62_A | 317 | Crystal Structure Of A Putative Farnesyl-Diphosphat | 1e-19 | ||
| 1rtr_A | 301 | Crystal Structure Of S. Aureus Farnesyl Pyrophospha | 3e-19 | ||
| 3m9u_A | 309 | Crystal Structure Of Geranylgeranyl Pyrophosphate S | 4e-18 | ||
| 1wl1_A | 299 | Crystal Structure Of Octaprenyl Pyrophosphate Synth | 2e-17 | ||
| 3p8r_A | 302 | Crystal Structure Of Polyprenyl Synthase From Vibri | 3e-17 | ||
| 2j1o_A | 268 | Geranylgeranyl Diphosphate Synthase From Sinapis Al | 6e-17 | ||
| 2h8o_A | 335 | The 1.6a Crystal Structure Of The Geranyltransferas | 3e-16 | ||
| 3p8l_A | 302 | Crystal Structure Of Polyprenyl Synthase From Enter | 4e-16 | ||
| 2ftz_A | 284 | Crystal Structure Of Geranyltranstransferase (Ec 2. | 1e-15 | ||
| 1rqi_A | 300 | Active Conformation Of Farnesyl Pyrophosphate Synth | 1e-15 | ||
| 1rqj_A | 299 | Active Conformation Of Farnesyl Pyrophosphate Synth | 1e-15 | ||
| 2for_A | 323 | Crystal Structure Of The Shigella Flexneri Farnesyl | 2e-15 | ||
| 3lom_A | 313 | Crystal Structure Of Geranyltransferase From Legion | 7e-15 | ||
| 3lji_A | 304 | Crystal Structure Of Putative Geranyltranstransfera | 7e-13 | ||
| 3lvs_A | 298 | Crystal Structure Of Farnesyl Diphosphate Synthase | 8e-13 | ||
| 3p41_A | 303 | Crystal Structure Of Polyprenyl Synthetase From Pse | 8e-13 | ||
| 1wmw_A | 330 | Crystal Structure Of Geranulgeranyl Diphosphate Syn | 9e-13 | ||
| 3lk5_A | 380 | Crystal Structure Of Putative Geranylgeranyl Pyroph | 9e-13 | ||
| 3ts7_A | 324 | Crystal Structure Of Farnesyl Diphosphate Synthase | 2e-12 | ||
| 2q80_A | 301 | Crystal Structure Of Human Geranylgeranyl Pyrophosp | 3e-12 | ||
| 4fp4_A | 285 | Crystal Structure Of Isoprenoid Synthase A3mx09 (Ta | 5e-10 | ||
| 2dh4_A | 340 | Geranylgeranyl Pyrophosphate Synthase Length = 340 | 5e-09 | ||
| 2azk_A | 289 | Crystal Structure For The Mutant W136e Of Sulfolobu | 1e-08 | ||
| 3m0g_A | 297 | Crystal Structure Of Putative Farnesyl Diphosphate | 9e-08 | ||
| 2azj_A | 289 | Crystal Structure For The Mutant D81c Of Sulfolobus | 1e-07 | ||
| 3mav_A | 395 | Crystal Structure Of Plasmodium Vivax Putative Farn | 2e-04 | ||
| 1ubx_A | 367 | Structure Of Farnesyl Pyrophosphate Synthetase Leng | 4e-04 | ||
| 4e1e_A | 361 | Crystal Structure Of Trypanosome Cruzi Farnesyl Dip | 8e-04 | ||
| 4dzw_A | 362 | Crystal Structure Of Trypanosome Cruzi Farnesyl Dip | 8e-04 | ||
| 1ubv_A | 367 | Structure Of Farnesyl Pyrophosphate Synthetase Leng | 8e-04 | ||
| 1yhk_A | 362 | Trypanosoma Cruzi Farnesyl Diphosphate Synthase Len | 8e-04 |
| >pdb|3AQ0|A Chain A, Ligand-Bound Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase (Surface Polar Residue Mutant) Length = 348 | Back alignment and structure |
|
| >pdb|3APZ|A Chain A, Apo Form Of Arabidopsis MediumLONG-Chain Length Prenyl Pyrophosphate Synthase Length = 348 | Back alignment and structure |
| >pdb|3MZV|A Chain A, Crystal Structure Of A Decaprenyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 341 | Back alignment and structure |
| >pdb|3OYR|A Chain A, Crystal Structure Of Polyprenyl Synthase From Caulobacter Crescentus Cb15 Complexed With Calcium And Isoprenyl Diphosphate Length = 345 | Back alignment and structure |
| >pdb|1WY0|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthetase From Pyrococcus Horikoshii Ot3 Length = 342 | Back alignment and structure |
| >pdb|3AQB|B Chain B, M. Luteus B-P 26 Heterodimeric Hexaprenyl Diphosphate Synthase In Complex With Magnesium Length = 325 | Back alignment and structure |
| >pdb|3LMD|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Atcc 13032 Length = 360 | Back alignment and structure |
| >pdb|3RMG|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Bacteroides Thetaiotaomicron Length = 334 | Back alignment and structure |
| >pdb|3KRA|A Chain A, Mint Heterotetrameric Geranyl Pyrophosphate Synthase In Complex With Magnesium Length = 295 | Back alignment and structure |
| >pdb|3TC1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Helicobacter Pylori Length = 315 | Back alignment and structure |
| >pdb|3N3D|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 335 | Back alignment and structure |
| >pdb|3PKO|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Complexed With Citrate Length = 334 | Back alignment and structure |
| >pdb|3NPK|A Chain A, The Crystal Structure Of Geranyltranstransferase From Campylobacter Jejuni Length = 291 | Back alignment and structure |
| >pdb|3Q1O|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori Complexed With Magnesium And Isoprenyl Diphosphate Length = 310 | Back alignment and structure |
| >pdb|3LLW|A Chain A, Crystal Structure Of Geranyltransferase From Helicobacter Pylori 26695 Length = 311 | Back alignment and structure |
| >pdb|4DHD|A Chain A, Crystal Structure Of Isoprenoid Synthase A3msh1 (Target Efi-501992) From Pyrobaculum Calidifontis Length = 358 | Back alignment and structure |
| >pdb|2J1P|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba In Complex With Ggpp Length = 293 | Back alignment and structure |
| >pdb|3UCA|A Chain A, Crystal Structure Of Isoprenoid Synthase (Target Efi-501974) From Clostridium Perfringens Length = 324 | Back alignment and structure |
| >pdb|3NF2|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Streptomyces Coelicolor A3(2) Length = 352 | Back alignment and structure |
| >pdb|3IPI|A Chain A, Crystal Structure Of A Geranyltranstransferase From The Methanosarcina Mazei Length = 295 | Back alignment and structure |
| >pdb|2AZL|A Chain A, Crystal Structure For The Mutant F117e Of Thermotoga Maritima Octaprenyl Pyrophosphate Synthase Length = 299 | Back alignment and structure |
| >pdb|1V4E|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima Length = 299 | Back alignment and structure |
| >pdb|1V4H|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F52a Mutant Length = 299 | Back alignment and structure |
| >pdb|1WKZ|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima K41a Mutant Length = 299 | Back alignment and structure |
| >pdb|1WL0|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R44a Mutant Length = 299 | Back alignment and structure |
| >pdb|1V4I|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132a Mutant Length = 299 | Back alignment and structure |
| >pdb|1VG4|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128A MUTANT Length = 299 | Back alignment and structure |
| >pdb|1V4J|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima V73y Mutant Length = 299 | Back alignment and structure |
| >pdb|1VG2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima A76y Mutant Length = 299 | Back alignment and structure |
| >pdb|1V4K|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima S77f Mutant Length = 299 | Back alignment and structure |
| >pdb|1VG7|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128AI123AD62A MUTANT Length = 299 | Back alignment and structure |
| >pdb|1VG6|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima F132aL128AI123A MUTANT Length = 299 | Back alignment and structure |
| >pdb|1WL2|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R90a Mutant Length = 299 | Back alignment and structure |
| >pdb|1WL3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima R91a Mutant Length = 299 | Back alignment and structure |
| >pdb|1VG3|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima A76yS77F MUTANT Length = 299 | Back alignment and structure |
| >pdb|4F62|A Chain A, Crystal Structure Of A Putative Farnesyl-Diphosphate Synthase From Marinomonas Sp. Med121 (Target Efi-501980) Length = 317 | Back alignment and structure |
| >pdb|1RTR|A Chain A, Crystal Structure Of S. Aureus Farnesyl Pyrophosphate Synthase Length = 301 | Back alignment and structure |
| >pdb|3M9U|A Chain A, Crystal Structure Of Geranylgeranyl Pyrophosphate Synthase From Lactobacillus Brevis Atcc 367 Length = 309 | Back alignment and structure |
| >pdb|1WL1|A Chain A, Crystal Structure Of Octaprenyl Pyrophosphate Synthase From Hyperthermophilic Thermotoga Maritima H74a Mutant Length = 299 | Back alignment and structure |
| >pdb|3P8R|A Chain A, Crystal Structure Of Polyprenyl Synthase From Vibrio Cholerae Length = 302 | Back alignment and structure |
| >pdb|2J1O|A Chain A, Geranylgeranyl Diphosphate Synthase From Sinapis Alba Length = 268 | Back alignment and structure |
| >pdb|2H8O|A Chain A, The 1.6a Crystal Structure Of The Geranyltransferase From Agrobacterium Tumefaciens Length = 335 | Back alignment and structure |
| >pdb|3P8L|A Chain A, Crystal Structure Of Polyprenyl Synthase From Enterococcus Faecalis V583 Length = 302 | Back alignment and structure |
| >pdb|2FTZ|A Chain A, Crystal Structure Of Geranyltranstransferase (Ec 2.5.1.10) (Tm0161) From Thermotoga Maritima At 1.90 A Resolution Length = 284 | Back alignment and structure |
| >pdb|1RQI|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Dimethylallyl S- Thiolodiphosphate Length = 300 | Back alignment and structure |
| >pdb|1RQJ|A Chain A, Active Conformation Of Farnesyl Pyrophosphate Synthase Bound To Isopentyl Pyrophosphate And Risedronate Length = 299 | Back alignment and structure |
| >pdb|2FOR|A Chain A, Crystal Structure Of The Shigella Flexneri Farnesyl Pyrophosphate Synthase Complex With An Isopentenyl Pyrophosphate Length = 323 | Back alignment and structure |
| >pdb|3LOM|A Chain A, Crystal Structure Of Geranyltransferase From Legionella Pneumophila Length = 313 | Back alignment and structure |
| >pdb|3LJI|A Chain A, Crystal Structure Of Putative Geranyltranstransferase From Pseudomonas Fluorescens Pf-5 Length = 304 | Back alignment and structure |
| >pdb|3LVS|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Sb1003 Length = 298 | Back alignment and structure |
| >pdb|3P41|A Chain A, Crystal Structure Of Polyprenyl Synthetase From Pseudomonas Fluorescens Pf-5 Complexed With Magnesium And Isoprenyl Pyrophosphate Length = 303 | Back alignment and structure |
| >pdb|1WMW|A Chain A, Crystal Structure Of Geranulgeranyl Diphosphate Synthase From Thermus Thermophilus Length = 330 | Back alignment and structure |
| >pdb|3LK5|A Chain A, Crystal Structure Of Putative Geranylgeranyl Pyrophosphate Synthase From Corynebacterium Glutamicum Length = 380 | Back alignment and structure |
| >pdb|3TS7|A Chain A, Crystal Structure Of Farnesyl Diphosphate Synthase (Target Efi-501951) From Methylococcus Capsulatus Length = 324 | Back alignment and structure |
| >pdb|2Q80|A Chain A, Crystal Structure Of Human Geranylgeranyl Pyrophosphate Synthase Bound To Ggpp Length = 301 | Back alignment and structure |
| >pdb|4FP4|A Chain A, Crystal Structure Of Isoprenoid Synthase A3mx09 (Target Efi-501993) From Pyrobaculum Calidifontis Length = 285 | Back alignment and structure |
| >pdb|2DH4|A Chain A, Geranylgeranyl Pyrophosphate Synthase Length = 340 | Back alignment and structure |
| >pdb|2AZK|A Chain A, Crystal Structure For The Mutant W136e Of Sulfolobus Solfataricus Hexaprenyl Pyrophosphate Synthase Length = 289 | Back alignment and structure |
| >pdb|3M0G|A Chain A, Crystal Structure Of Putative Farnesyl Diphosphate Synthase From Rhodobacter Capsulatus Length = 297 | Back alignment and structure |
| >pdb|2AZJ|A Chain A, Crystal Structure For The Mutant D81c Of Sulfolobus Solfataricus Hexaprenyl Pyrophosphate Synthase Length = 289 | Back alignment and structure |
| >pdb|3MAV|A Chain A, Crystal Structure Of Plasmodium Vivax Putative Farnesyl Pyrophosphate Synthase (Pv092040) Length = 395 | Back alignment and structure |
| >pdb|1UBX|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase Length = 367 | Back alignment and structure |
| >pdb|4E1E|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl Diphosphate Synthase In Complex With [2-(n-hexylamino)ethane-1,1-diyl]bisphosphonic Acid And Mg2+ Length = 361 | Back alignment and structure |
| >pdb|4DZW|A Chain A, Crystal Structure Of Trypanosome Cruzi Farnesyl Diphosphate Synthase In Complex With [2-(cyclohexylamino)ethane-1,1-diyl]bisphosphonic Acid And Mg2+ Length = 362 | Back alignment and structure |
| >pdb|1UBV|A Chain A, Structure Of Farnesyl Pyrophosphate Synthetase Length = 367 | Back alignment and structure |
| >pdb|1YHK|A Chain A, Trypanosoma Cruzi Farnesyl Diphosphate Synthase Length = 362 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* Length = 348 | Back alignment and structure |
|---|
Score = 404 bits (1041), Expect = e-141
Identities = 130/338 (38%), Positives = 208/338 (61%), Gaps = 19/338 (5%)
Query: 100 NIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIF--GAGGKRLRPALVFLVSRAT--- 154
+ F +VA++L L+ L+ +V AE P L SAAE F G GK+ R ++ L++ A
Sbjct: 9 DPFSLVADELSLLSNKLREMVLAEVPKLASAAEYFFKRGVQGKQFRSTILLLMATALDVR 68
Query: 155 --------AELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLYGT 206
+ + EL + R +AEI EMIH ASL+HDDVLD++D RRG +++ + G
Sbjct: 69 VPEALIGESTDIVTSELRVRQRGIAEITEMIHVASLLHDDVLDDADTRRGVGSLNVVMGN 128
Query: 207 RVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFDCDLELEEYLI 266
+++VLAGDF+ +++ LA L+N EV+ L++ ++ +GE + +S + ++ Y+
Sbjct: 129 KMSVLAGDFLLSRACGALAALKNTEVVALLATAVEHLVTGETMEITSSTEQRYSMDYYMQ 188
Query: 267 KSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGK 326
K+YYKTASLI+ S K A+ +G ++ +EYGRNLGL+FQ++DDILDFT ++ LGK
Sbjct: 189 KTYYKTASLISNSCKAVAVLTGQTAEVAVLAFEYGRNLGLAFQLIDDILDFTGTSASLGK 248
Query: 327 PAASDLAKGNLTAPVIFALEKEPKLREIIESEFCETGSLDEAIKLVKTSGGIEEAQELAK 386
+ SD+ G +TAP++FA+E+ P+LRE+++ + ++D A++ + S GI+ A+ELA
Sbjct: 249 GSLSDIRHGVITAPILFAMEEFPQLREVVDQVEKDPRNVDIALEYLGKSKGIQRARELAM 308
Query: 387 EKANLAIHNLHCLPRSP------FRVALEDMVMFNLER 418
E ANLA + LP + R AL D+ + R
Sbjct: 309 EHANLAAAAIGSLPETDNEDVKRSRRALIDLTHRVITR 346
|
| >3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A Length = 334 | Back alignment and structure |
|---|
| >3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* Length = 325 | Back alignment and structure |
|---|
| >3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} Length = 345 | Back alignment and structure |
|---|
| >3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} Length = 334 | Back alignment and structure |
|---|
| >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* Length = 360 | Back alignment and structure |
|---|
| >1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A Length = 299 | Back alignment and structure |
|---|
| >3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} Length = 341 | Back alignment and structure |
|---|
| >3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} Length = 315 | Back alignment and structure |
|---|
| >1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} Length = 342 | Back alignment and structure |
|---|
| >4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} Length = 358 | Back alignment and structure |
|---|
| >3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} Length = 295 | Back alignment and structure |
|---|
| >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 Length = 301 | Back alignment and structure |
|---|
| >3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} Length = 352 | Back alignment and structure |
|---|
| >1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} Length = 330 | Back alignment and structure |
|---|
| >2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A Length = 289 | Back alignment and structure |
|---|
| >4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} Length = 285 | Back alignment and structure |
|---|
| >2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... Length = 340 | Back alignment and structure |
|---|
| >3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* Length = 380 | Back alignment and structure |
|---|
| >1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A Length = 367 | Back alignment and structure |
|---|
| >2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... Length = 374 | Back alignment and structure |
|---|
| >1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* Length = 362 | Back alignment and structure |
|---|
| >3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} Length = 324 | Back alignment and structure |
|---|
| >3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* Length = 309 | Back alignment and structure |
|---|
| >1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 Length = 301 | Back alignment and structure |
|---|
| >3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} Length = 302 | Back alignment and structure |
|---|
| >3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} Length = 291 | Back alignment and structure |
|---|
| >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A Length = 297 | Back alignment and structure |
|---|
| >2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} Length = 335 | Back alignment and structure |
|---|
| >3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* Length = 390 | Back alignment and structure |
|---|
| >1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* Length = 299 | Back alignment and structure |
|---|
| >3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* Length = 311 | Back alignment and structure |
|---|
| >3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} Length = 313 | Back alignment and structure |
|---|
| >4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} Length = 317 | Back alignment and structure |
|---|
| >3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} Length = 324 | Back alignment and structure |
|---|
| >3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} Length = 273 | Back alignment and structure |
|---|
| >3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* Length = 304 | Back alignment and structure |
|---|
| >3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} Length = 302 | Back alignment and structure |
|---|
| >2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* Length = 293 | Back alignment and structure |
|---|
| >3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* Length = 274 | Back alignment and structure |
|---|
| >2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} Length = 284 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 420 | |||
| 3oyr_A | 345 | Trans-isoprenyl diphosphate synthase; isoprenyl sy | 100.0 | |
| 3mzv_A | 341 | Decaprenyl diphosphate synthase; transferase, stru | 100.0 | |
| 3rmg_A | 334 | Octaprenyl-diphosphate synthase; structural genomi | 100.0 | |
| 3pko_A | 334 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 100.0 | |
| 1wy0_A | 342 | Geranylgeranyl pyrophosphate synthetase; pyrococcu | 100.0 | |
| 3lmd_A | 360 | Geranylgeranyl pyrophosphate synthase; isoprenyl d | 100.0 | |
| 3nf2_A | 352 | Putative polyprenyl synthetase; isoprenyl diphosph | 100.0 | |
| 3aqb_B | 325 | Component B of hexaprenyl diphosphate synthase; pr | 100.0 | |
| 3apz_A | 348 | Geranyl diphosphate synthase; prenyltransferase, a | 100.0 | |
| 4dhd_A | 358 | Polyprenyl synthetase; isoprenoid synthesis, isopr | 100.0 | |
| 1wmw_A | 330 | Geranylgeranyl diphosphate synthetase; GGPP, preny | 100.0 | |
| 3lk5_A | 380 | Geranylgeranyl pyrophosphate synthase; structural | 100.0 | |
| 3tc1_A | 315 | Octaprenyl pyrophosphate synthase; all alpha-helic | 100.0 | |
| 1v4e_A | 299 | Octoprenyl-diphosphate synthase; trans-type prenyl | 100.0 | |
| 2e8v_A | 340 | Geranylgeranyl pyrophosphate synthetase; prenyltra | 100.0 | |
| 2q80_A | 301 | Geranylgeranyl pyrophosphate synthetase; isoprenoi | 100.0 | |
| 2h8o_A | 335 | Geranyltranstransferase; geranyltransferase,agroba | 100.0 | |
| 3uca_A | 324 | Geranyltranstransferase; isoprenoid synthesis, iso | 100.0 | |
| 2qis_A | 374 | Farnesyl pyrophosphate synthetase; trans-prenyltra | 100.0 | |
| 1yhl_A | 362 | Farnesyl pyrophosphate synthase; farnesyl diphosph | 100.0 | |
| 3ts7_A | 324 | Geranyltranstransferase; isoprenoid synthesis, far | 100.0 | |
| 1rtr_A | 301 | Geranyltranstransferase; 2.50A {Staphylococcus aur | 100.0 | |
| 4f62_A | 317 | Geranyltranstransferase; enzyme function initiativ | 100.0 | |
| 3lsn_A | 304 | Geranyltranstransferase; structural genomics, prot | 100.0 | |
| 1uby_A | 367 | FPS, farnesyl diphosphate synthase; transferase, i | 100.0 | |
| 1rqj_A | 299 | Geranyltranstransferase; bisphosphonate, isoprenyl | 100.0 | |
| 2ihi_A | 395 | Pyrophosphate synthase; PV092040, structural genom | 100.0 | |
| 3p8r_A | 302 | Geranyltranstransferase; isoprenyl synthase, struc | 100.0 | |
| 2her_A | 368 | Fragment, farnesyl pyrophosphate synthase; farnesy | 100.0 | |
| 3p8l_A | 302 | Geranyltranstransferase; isoprenyl synthase, struc | 100.0 | |
| 3mav_A | 395 | Farnesyl pyrophosphate synthase; PV092040, structu | 100.0 | |
| 3lom_A | 313 | Geranyltranstransferase; geranyltransferase, struc | 100.0 | |
| 3m0g_A | 297 | Farnesyl diphosphate synthase; structural genomics | 100.0 | |
| 3pde_A | 309 | Farnesyl-diphosphate synthase; isoprenyl diphospha | 100.0 | |
| 3dyh_A | 390 | Farnesyl pyrophosphate synthase; protein-bisphosph | 100.0 | |
| 2ftz_A | 284 | Geranyltranstransferase; TM0161, structural GE joi | 100.0 | |
| 3ipi_A | 295 | Geranyltranstransferase; isoprene biosynthesis, he | 100.0 | |
| 3llw_A | 311 | Geranyltranstransferase (ISPA); structural genomic | 100.0 | |
| 2q58_A | 368 | Fragment, farnesyl pyrophosphate synthase; farnesy | 100.0 | |
| 3npk_A | 291 | Geranyltranstransferase; isoprene biosynthesis, SG | 100.0 | |
| 2azj_A | 289 | Geranylgeranyl pyrophosphate synthetase; hexpps, t | 100.0 | |
| 2j1p_A | 293 | Geranylgeranyl pyrophosphate synthetase; transfera | 100.0 | |
| 4fp4_A | 285 | Polyprenyl synthetase; isoprenoid synthesis, isopr | 100.0 | |
| 3kra_B | 274 | Geranyl diphosphate synthase small subunit; prenyl | 100.0 | |
| 3qkc_B | 273 | Geranyl diphosphate synthase small subunit; struct | 100.0 | |
| 3vj8_A | 343 | Squalene synthase; farnesyl-diphosphate farnesyltr | 95.89 | |
| 4hd1_A | 294 | Squalene synthase HPNC; MCSG, structural genomics, | 94.94 | |
| 3kb9_A | 382 | EPI-isozizaene synthase; terpenoid cyclase, alpha- | 93.74 | |
| 3acx_A | 293 | Dehydrosqualene synthase; CRTM, carotenoid biosynt | 93.41 |
| >3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.2e-71 Score=553.19 Aligned_cols=321 Identities=31% Similarity=0.533 Sum_probs=272.6
Q ss_pred cCcccHHHHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHH
Q 014706 93 RSPISLANIFEVVAEDLQTLNQNLKSIVGAENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAE 172 (420)
Q Consensus 93 ~~~~~~~~l~~~l~~~l~~v~~~l~~~~~~~~p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAa 172 (420)
..++++.+++..+.++++.|++.|.+.+++.+|.+.++++|.+..||||+||+|+++++++++ .. .+.+.++|+
T Consensus 19 ~~~~~~~~l~~~l~~~l~~v~~~l~~~l~~~~~~l~~~~~y~~~~gGKrlRp~l~ll~~~~~g----~~--~~~~~~~A~ 92 (345)
T 3oyr_A 19 RKSGSVDRLVRLAEADMAGVNRLITDRMQSDVAIIPALAEHLIAAGGKRLRPLMTVAAARLAG----AD--NDHFQKLAA 92 (345)
T ss_dssp -CCCCSHHHHHHTHHHHHHHHHHHHHHTCCSSTHHHHHHHHHHTTTCCCHHHHHHHHHHHHTT----CC--SSTHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHhccCChhHHHHHHHHHhCCCCcHHHHHHHHHHHHhC----CC--HHHHHHHHH
Confidence 446789999999999999999999999999999999999999999999999999999888754 22 256789999
Q ss_pred HHHHHHHHHhhhcccCCCCCCCCCCCchhhhcChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhh
Q 014706 173 IIEMIHTASLIHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQAS 252 (420)
Q Consensus 173 avEliH~AsLIHDDIiD~s~~RRG~pt~h~~~G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~ 252 (420)
++||||+||||||||||+|++|||+||+|.+||+++|||+||||+++||+++++..++++++++++++..++.||+.|+.
T Consensus 93 aiEliH~asLiHDDi~D~s~~RRG~pt~h~~~G~~~AIl~GD~Ll~~a~~~l~~~~~~~~~~~~~~~~~~~~~GQ~~dl~ 172 (345)
T 3oyr_A 93 AVEFIHTATLLHDDVVDGSQLRRGKVAAHLIWGGAQSVLVGDFLFARAFELMVETNSMKALEILARASRVIAEGEVLQLM 172 (345)
T ss_dssp HHHHHHHHHHHTTTTC---------CCCSCCTTHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCcccCCCCCCCCCccHHHhhCHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999988
Q ss_pred hccCCCCCHHHHHHHHhhccHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccc
Q 014706 253 SLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDL 332 (420)
Q Consensus 253 ~~~~~~~t~~~Yl~~i~~KTa~L~~~a~~~gailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL 332 (420)
...+.++++++|++|+++|||+||+++|++|++++|++++..+.+++||+++|+||||+||++||+++++.+|||.|+||
T Consensus 173 ~~~~~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l~~~g~~lG~aFQi~DD~lD~~~d~~~~GK~~g~Dl 252 (345)
T 3oyr_A 173 RSHDLNLSQAVYLEIIQAKTAELFAAASEAGAVSAGVDVAKSEALRDYGLNLGLAFQLADDALDYGGATETLGKNAGDDF 252 (345)
T ss_dssp TSSCSSCCHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred cCCCCCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccCChhhcCCCccchh
Confidence 77777889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcccHHHHHHhhh-ChHHHHHHHhhcC----CcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHH
Q 014706 333 AKGNLTAPVIFALEK-EPKLREIIESEFC----ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVA 407 (420)
Q Consensus 333 ~eGk~TlP~l~ale~-~~~l~~~l~~~~~----~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 407 (420)
++||+|||++++++. +++.+..+...+. +++++++++++++++|+++++++.+++|.++|++.|+.||+++.++.
T Consensus 253 ~egK~TlP~i~al~~~~~~~~~~l~~~l~~~~~~~~~~~~v~~~i~~~gale~a~~~a~~~~~~A~~~L~~lp~~~~~~~ 332 (345)
T 3oyr_A 253 REGKATLPLLLAIARSGPREAEFWERAIGRREQTEADFRRARELIIGSGALDATLDLAADYADKAKAALAMFPANDWREA 332 (345)
T ss_dssp ----CCHHHHHHHHHSCSHHHHHHHHHCC----CCSSHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTTSCSSHHHHH
T ss_pred hcCchHHHHHHHHHhCCHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCcHHHHH
Confidence 999999999999997 5666666655443 56789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccC
Q 014706 408 LEDMVMFNLERF 419 (420)
Q Consensus 408 L~~l~~~~~~R~ 419 (420)
|..|++|+++|.
T Consensus 333 L~~la~~~~~R~ 344 (345)
T 3oyr_A 333 LEELADFAVSRR 344 (345)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHhcc
Confidence 999999999996
|
| >3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
| >3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
| >3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A | Back alignment and structure |
|---|
| >1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
| >3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A* | Back alignment and structure |
|---|
| >3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor} | Back alignment and structure |
|---|
| >3aqb_B Component B of hexaprenyl diphosphate synthase; prenyltransferase, transferase; 2.40A {Micrococcus luteus} PDB: 3aqc_B* | Back alignment and structure |
|---|
| >3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A* | Back alignment and structure |
|---|
| >4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A* | Back alignment and structure |
|---|
| >1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus} | Back alignment and structure |
|---|
| >3lk5_A Geranylgeranyl pyrophosphate synthase; structural genomics, protein structure initiative, geranylge pyrophosphate synthase; 1.90A {Corynebacterium glutamicum} PDB: 3qqv_A* | Back alignment and structure |
|---|
| >3tc1_A Octaprenyl pyrophosphate synthase; all alpha-helices fold, transferase; 2.00A {Helicobacter pylori} | Back alignment and structure |
|---|
| >1v4e_A Octoprenyl-diphosphate synthase; trans-type prenyltransferase, thermophilic; 2.28A {Thermotoga maritima} SCOP: a.128.1.1 PDB: 1v4j_A 1wkz_A 1vg2_A 1wl3_A 1wl0_A 1wl2_A 1v4h_A 1v4i_A 1v4k_A 2azl_A 1wl1_A 1vg4_A 1vg3_A 1vg6_A 1vg7_A | Back alignment and structure |
|---|
| >2e8v_A Geranylgeranyl pyrophosphate synthetase; prenyltransferase, farnesyl pyrophosphate, bisphosphonate; HET: GRG; 1.80A {Saccharomyces cerevisiae} PDB: 2e8t_A* 2e8u_A* 2dh4_A* 2e8w_A* 2e8x_A* 2e90_A* 2e91_A* 2e92_A* 2e93_A* 2e94_A* 2e95_A* 2z4v_A* 2z4w_A* 2z4x_A* 2z4y_A* 2z4z_A* 2z50_A* 2z52_A* 2z78_A* 2z7h_A* ... | Back alignment and structure |
|---|
| >2q80_A Geranylgeranyl pyrophosphate synthetase; isoprenoid pathway, isopentenyl transferase, structural GENO structural genomics consortium, SGC; HET: GRG; 2.70A {Homo sapiens} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
| >3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens} | Back alignment and structure |
|---|
| >2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ... | Back alignment and structure |
|---|
| >1yhl_A Farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, bisphosphonate, dimethyl ALLY pyrophosphate sulfate, FPPS, transferase; HET: DMA RIS; 1.95A {Trypanosoma cruzi} PDB: 1yhk_A* 1yhm_A* 3iba_A* 3ick_A* 3icm_A* 3icn_A* 3icz_A* 3id0_A* | Back alignment and structure |
|---|
| >3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus} | Back alignment and structure |
|---|
| >1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP} | Back alignment and structure |
|---|
| >3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A* | Back alignment and structure |
|---|
| >1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A | Back alignment and structure |
|---|
| >1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A* | Back alignment and structure |
|---|
| >3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1 | Back alignment and structure |
|---|
| >3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis} | Back alignment and structure |
|---|
| >3mav_A Farnesyl pyrophosphate synthase; PV092040, structural genomics, structural genomics consortium, SGC, transferase, isoprene biosynthesis; 2.10A {Plasmodium vivax} PDB: 3cc9_A* 3ez3_A* 3ldw_A* 3mys_A* 3ph7_A* 3rbm_A* 3ryw_A* | Back alignment and structure |
|---|
| >3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
| >3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A | Back alignment and structure |
|---|
| >3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A* | Back alignment and structure |
|---|
| >3dyh_A Farnesyl pyrophosphate synthase; protein-bisphosphonate complex, isoprene biosynthesis, transferase; HET: 721; 1.94A {Trypanosoma brucei} PDB: 2ewg_A* 2i19_A* 2p1c_A* 3dyf_A* 3dyg_A* 2ogd_A* 3efq_A* 3egt_A* | Back alignment and structure |
|---|
| >2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima} | Back alignment and structure |
|---|
| >3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei} | Back alignment and structure |
|---|
| >3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A* | Back alignment and structure |
|---|
| >2q58_A Fragment, farnesyl pyrophosphate synthase; farnesyl diphosphate synthase, structural genomics, structur genomics consortium, SGC; HET: ZOL; 2.37A {Cryptosporidium parvum} PDB: 2o1o_A* | Back alignment and structure |
|---|
| >3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni} | Back alignment and structure |
|---|
| >2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A | Back alignment and structure |
|---|
| >2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A* | Back alignment and structure |
|---|
| >4fp4_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; HET: GER UNL; 2.00A {Pyrobaculum calidifontis} | Back alignment and structure |
|---|
| >3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B* | Back alignment and structure |
|---|
| >3qkc_B Geranyl diphosphate synthase small subunit; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.20A {Antirrhinum majus} | Back alignment and structure |
|---|
| >3vj8_A Squalene synthase; farnesyl-diphosphate farnesyltransferase, head-TO-head synth cholesterol biosynthesis, oxidoreductase, transferase; 1.52A {Homo sapiens} PDB: 3vj9_A 3vja_A 3vjb_A 3vjc_A* 3v66_A* 3lee_A* 3q2z_A* 3q30_A* 3asx_A* 1ezf_A* | Back alignment and structure |
|---|
| >4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
| >3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A* | Back alignment and structure |
|---|
| >3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ... | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 420 | ||||
| d2q80a1 | 291 | a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate s | 1e-38 | |
| d1v4ea_ | 280 | a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Th | 5e-32 | |
| d1fpsa_ | 348 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 3e-30 | |
| d1rqja_ | 299 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 2e-27 | |
| d1rtra_ | 290 | a.128.1.1 (A:) Farnesyl diphosphate synthase (gera | 2e-24 |
| >d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} Length = 291 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Isoprenyl diphosphate synthases domain: Geranylgeranyl pyrophosphate synthetase species: Human (Homo sapiens) [TaxId: 9606]
Score = 139 bits (349), Expect = 1e-38
Identities = 57/293 (19%), Positives = 108/293 (36%), Gaps = 12/293 (4%)
Query: 123 ENPVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASL 182
+L+ + + GK++R L + LK K + + E+ EM+H ASL
Sbjct: 3 VQRILLEPYKYLLQLPGKQVRTKLSQAFNHW------LKVPEDKLQIIIEVTEMLHNASL 56
Query: 183 IHDDVLDESDMRRGQETVHQLYGTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKD 242
+ DD+ D S +RRG H +YG + + ++++ + L++ + +KL ++ + +
Sbjct: 57 LIDDIEDNSKLRRGFPVAHSIYGIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLE 116
Query: 243 FASGEIKQASSLFDCDLELEEYLIKSYYKTASLIAASTKGAAIFSGVDGSLSKQMYEYGR 302
G+ + EE + + G + +
Sbjct: 117 LHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLMQLFSDY---KEDLKPLLN 173
Query: 303 NLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEK---EPKLREIIESEF 359
LGL FQI DD + K DL +G + P I A+ +++ I+
Sbjct: 174 TLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRT 233
Query: 360 CETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALEDMV 412
+ ++ G E + KE A + +P VAL +
Sbjct: 234 ENIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVKHL 286
|
| >d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} Length = 280 | Back information, alignment and structure |
|---|
| >d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} Length = 348 | Back information, alignment and structure |
|---|
| >d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} Length = 299 | Back information, alignment and structure |
|---|
| >d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} Length = 290 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 420 | |||
| d2q80a1 | 291 | Geranylgeranyl pyrophosphate synthetase {Human (Ho | 100.0 | |
| d1fpsa_ | 348 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d1v4ea_ | 280 | Octoprenyl-diphosphate synthase {Thermotoga mariti | 100.0 | |
| d1rqja_ | 299 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d1rtra_ | 290 | Farnesyl diphosphate synthase (geranyltranstransfe | 100.0 | |
| d1ezfa_ | 333 | Squalene synthase {Human (Homo sapiens) [TaxId: 96 | 96.96 | |
| d1kiya_ | 354 | Trichodiene synthase {Fusarium sporotrichioides [T | 83.85 |
| >d2q80a1 a.128.1.1 (A:6-296) Geranylgeranyl pyrophosphate synthetase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Terpenoid synthases superfamily: Terpenoid synthases family: Isoprenyl diphosphate synthases domain: Geranylgeranyl pyrophosphate synthetase species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-61 Score=473.17 Aligned_cols=276 Identities=22% Similarity=0.296 Sum_probs=244.7
Q ss_pred hHHHHHHHHHHcCCCCchHHHHHHHHHHHHhhhhCCccccHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCCCCchhhhc
Q 014706 125 PVLMSAAEQIFGAGGKRLRPALVFLVSRATAELVGLKELTTKHRRLAEIIEMIHTASLIHDDVLDESDMRRGQETVHQLY 204 (420)
Q Consensus 125 p~l~~~~~~~~~~gGKrlRp~Lvll~a~a~~~~~g~~~~~~~~~~lAaavEliH~AsLIHDDIiD~s~~RRG~pt~h~~~ 204 (420)
+.|.++++|.+..||||+||.|++++++++ |.+ .+.+.++|+++||||+||||||||||+|++|||+||+|.+|
T Consensus 5 ~~l~e~~~y~~~~gGKr~Rp~l~~~~~~~~----~~~--~~~~~~~a~aiEllH~asLihDDi~D~~~~RRg~pt~~~~~ 78 (291)
T d2q80a1 5 RILLEPYKYLLQLPGKQVRTKLSQAFNHWL----KVP--EDKLQIIIEVTEMLHNASLLIDDIEDNSKLRRGFPVAHSIY 78 (291)
T ss_dssp HHHTHHHHHHTTSSCHHHHHHHHHHHHHHH----CCC--HHHHHHHHHHHHHHHHHHHHHHHHHHTCSEETTEECHHHHH
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHh----CCC--HHHHHHHHHHHHHHHHHHHHhcccccCcccccCCCcccccc
Confidence 456789999999999999999999877765 333 36788999999999999999999999999999999999999
Q ss_pred ChHHHHHHhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhHHHHHhhhccC-CCCCHHHHHHHHhhccHHHHHHHHHHH
Q 014706 205 GTRVAVLAGDFMFAQSSWYLANLENLEVIKLISQVIKDFASGEIKQASSLFD-CDLELEEYLIKSYYKTASLIAASTKGA 283 (420)
Q Consensus 205 G~~~Ail~GD~Ll~~a~~~l~~l~~~~v~~~ls~~~~~l~~Ge~~q~~~~~~-~~~t~~~Yl~~i~~KTa~L~~~a~~~g 283 (420)
|++.||++||+|++.+++.+....++.+++.+++.+..++.||..|.....+ ..+++++|+.|+++|||+||+++|.+|
T Consensus 79 G~~~Ail~gd~l~~~a~~~l~~~~~~~~~~~~~~~~~~~~~gq~~d~~~~~~~~~~s~~~y~~ii~~KT~~Lf~~~~~~g 158 (291)
T d2q80a1 79 GIPSVINSANYVYFLGLEKVLTLDHPDAVKLFTRQLLELHQGQGLDIYWRDNYTCPTEEEYKAMVLQKTGGLFGLAVGLM 158 (291)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhhhhHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhHhccccccccccccccCCHHHHHHHHHhccchhhHhhhhhh
Confidence 9999999999999999999999988899999999999999999988765433 346899999999999999999999999
Q ss_pred HHhcCCChHHHHHHHHHHHHHHHHHhHHhhHhhhccchhhhCCCCcccccCCcccHHHHHHhhhC---hHHHHHHHhhcC
Q 014706 284 AIFSGVDGSLSKQMYEYGRNLGLSFQIVDDILDFTQSAEQLGKPAASDLAKGNLTAPVIFALEKE---PKLREIIESEFC 360 (420)
Q Consensus 284 ailag~~~~~~~~l~~~G~~lGiafQI~DDllD~~~~~~~~GK~~g~DL~eGk~TlP~l~ale~~---~~l~~~l~~~~~ 360 (420)
++++|.+++ +++||+++|+||||+||++|++++++.+|||.|+||++||+|||++++++.. +++.+++.+...
T Consensus 159 a~~~~~~~~----l~~~g~~lG~afQi~DD~ld~~~~~~~~GK~~g~Dl~~gK~Tlpvi~al~~~~~~~~l~~il~~~~~ 234 (291)
T d2q80a1 159 QLFSDYKED----LKPLLNTLGLFFQIRDDYANLHSKEYSENKSFCEDLTEGKFSFPTIHAIWSRPESTQVQNILRQRTE 234 (291)
T ss_dssp HHTCCCCSC----CHHHHHHHHHHHHHHHHHHHHHCC------CTTHHHHHTCCCHHHHHHHHHSTTCCHHHHHHHHTCC
T ss_pred hhhcccchh----hHHHHHHHHHHHHHHHHhhhhccchhhccccccchhccCCCcHHHHHHHHhcccHHHHHHHHhcccC
Confidence 999998754 7889999999999999999999999999999999999999999999999873 467788877777
Q ss_pred CcchHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHH
Q 014706 361 ETGSLDEAIKLVKTSGGIEEAQELAKEKANLAIHNLHCLPRSPFRVALED 410 (420)
Q Consensus 361 ~~~~~~~i~~li~~~g~i~~a~~~a~~~~~~A~~~L~~lp~~~~~~~L~~ 410 (420)
+++.+++++++++++|+++++++.+++|.++|++.|+.+|+++.++.|..
T Consensus 235 ~~~~~~~i~~~l~~~ga~~~a~~~~~~~~~~A~~~L~~l~~~~~~~~L~~ 284 (291)
T d2q80a1 235 NIDIKKYCVHYLEDVGSFEYTRNTLKELEAKAYKQIDARGGNPELVALVK 284 (291)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 77888999999999999999999999999999999999999887666543
|
| >d1fpsa_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
| >d1v4ea_ a.128.1.1 (A:) Octoprenyl-diphosphate synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
| >d1rqja_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
| >d1rtra_ a.128.1.1 (A:) Farnesyl diphosphate synthase (geranyltranstransferase) {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
| >d1ezfa_ a.128.1.2 (A:) Squalene synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1kiya_ a.128.1.5 (A:) Trichodiene synthase {Fusarium sporotrichioides [TaxId: 5514]} | Back information, alignment and structure |
|---|