Citrus Sinensis ID: 014714

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA
cccccEEEEEEEEcccHHHHHHHccccccccccccccccEEEEcccccEEEEEEEEccccccccEEEcccccccccccHHHHHHHHHHHHcccccccccHHHHccccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccccEEEcccccccccccccEEEcccccccccEEEEEEEEcccccccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHccccccEEEEcHHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccccEEccccccccccccccccccc
ccccccEEEEEEEcccEEEEEEEccccccccEccccccEEEEEcHcccEEEEEEEEcccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccHHHHHcccEEEEEcccccccccccEEEccccccccccEEEEEEEccccccccccccccccHccHHHHHHHHHHHcHHHHHHHHHHHHHccHHHHHHHHHHccccccEEEccccccEEEccHHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEEccccHHHHHHHHHHHHcccccccccccEcccccEEcccccccccccccccccHHHHHHccccccccccEEEEEEccccccEEcccccHHcccccccccccc
MAAEKWVLMVTAQTPTNIAVIKYwgkrdetlilpvndsisvtldpdhlcttttvavspsfdqdrmwlngkeislgggryqNCLKEIRSracdvedtekgIKIEKKDWQKLHLHIAsfnnfptaaglaSSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWilgkegngsdslaVQLVDEEHWNDLVIIIAVVSSrqketssttgmreSVETSLLLQHRAKEVVPKRIVQMEEAiqnhdfssfaqltcadsnqfhavcldtsppifymndtsHRIISYVERwnrsvgspqvaytfdagpnaVLIARNRKIATELLQRLLfffppnsetdlnsyvlgdksilrdagidgmkdiealplppeinnisaqkysgdvnyfictrpgggpvllsddskallnpksglpkea
MAAEKWVLMvtaqtptniAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVavspsfdqdrmWLNGKeislgggryqNCLKEIRSracdvedtekGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVssrqketssttgmresvetslllqhrakEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSddskallnpksglpkea
MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTaaglassaagfaCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA
****KWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKE******AIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVV*********************LLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVL*******************
******V**VTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQK*********ESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMK**************SAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLP***
MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVS*****************TSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA
****KWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSR*************VETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKS*L****
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MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKEA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query420 2.2.26 [Sep-21-2011]
Q99JF5401 Diphosphomevalonate decar yes no 0.938 0.982 0.502 9e-99
P53602400 Diphosphomevalonate decar yes no 0.947 0.995 0.486 5e-98
Q5U403400 Diphosphomevalonate decar yes no 0.921 0.967 0.493 2e-97
Q62967401 Diphosphomevalonate decar yes no 0.938 0.982 0.492 4e-97
Q0P570400 Diphosphomevalonate decar yes no 0.940 0.987 0.471 3e-96
Q54YQ9391 Diphosphomevalonate decar yes no 0.909 0.976 0.456 9e-95
Q6BY07388 Diphosphomevalonate decar yes no 0.909 0.984 0.468 1e-84
P32377396 Diphosphomevalonate decar yes no 0.923 0.979 0.451 3e-84
Q751D8397 Diphosphomevalonate decar yes no 0.930 0.984 0.456 7e-84
O13963393 Diphosphomevalonate decar yes no 0.911 0.974 0.448 3e-82
>sp|Q99JF5|MVD1_MOUSE Diphosphomevalonate decarboxylase OS=Mus musculus GN=Mvd PE=1 SV=2 Back     alignment and function desciption
 Score =  360 bits (925), Expect = 9e-99,   Method: Compositional matrix adjust.
 Identities = 212/422 (50%), Positives = 270/422 (63%), Gaps = 28/422 (6%)

Query: 1   MAAEK-WVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPS 59
           MA+EK   LMVT   P NIAVIKYWGKRDE LILP+N S+SVTL  D L TTTTVA+S  
Sbjct: 1   MASEKPQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKD 60

Query: 60  FDQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNN 119
           F +DR+WLNG+E  +G  R Q CL+EIR  A     TE G  +      K+H  +AS NN
Sbjct: 61  FTEDRIWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSYKVH--VASVNN 118

Query: 120 FPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGK 179
           FPTAAGLASSAAG+ACL ++LA++  +   +  LS +AR+GSGSACRSL+GGFV+W +G+
Sbjct: 119 FPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACRSLYGGFVEWQMGE 175

Query: 180 EGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVP 239
           + +G DS+A Q+  E HW  L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+ VVP
Sbjct: 176 QADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVP 235

Query: 240 KRIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRS 299
           +R+ +M   IQ  DF  FAQLT  DSNQFHA CLDT PPI Y+NDTS RII  V R+N  
Sbjct: 236 ERMKEMTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTH 295

Query: 300 VGSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAG 359
            G  +VAYTFDAGPNAV+      +A E +  +   FPP +         GDK       
Sbjct: 296 QGQTKVAYTFDAGPNAVIFTLEDTVA-EFVAAVRHSFPPAAN--------GDKF------ 340

Query: 360 IDGMKDIEALP--LPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGL 416
              +K ++  P  L  E+   ++ +   G V Y I T+ G GP +L D    LL  + GL
Sbjct: 341 ---LKGLQVAPVLLSDELKAALAVEPSPGGVQYIIATQVGPGPQVLDDTHDHLLG-QDGL 396

Query: 417 PK 418
           P+
Sbjct: 397 PQ 398
Performs the first committed step in the biosynthesis of isoprenes.
Mus musculus (taxid: 10090)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 3
>sp|P53602|MVD1_HUMAN Diphosphomevalonate decarboxylase OS=Homo sapiens GN=MVD PE=1 SV=1 Back     alignment and function description
>sp|Q5U403|MVD1_DANRE Diphosphomevalonate decarboxylase OS=Danio rerio GN=mvd PE=2 SV=1 Back     alignment and function description
>sp|Q62967|MVD1_RAT Diphosphomevalonate decarboxylase OS=Rattus norvegicus GN=Mvd PE=2 SV=1 Back     alignment and function description
>sp|Q0P570|MVD1_BOVIN Diphosphomevalonate decarboxylase OS=Bos taurus GN=MVD PE=2 SV=1 Back     alignment and function description
>sp|Q54YQ9|MVD1_DICDI Diphosphomevalonate decarboxylase OS=Dictyostelium discoideum GN=mvd PE=3 SV=1 Back     alignment and function description
>sp|Q6BY07|MVD1_DEBHA Diphosphomevalonate decarboxylase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=MVD1 PE=3 SV=2 Back     alignment and function description
>sp|P32377|MVD1_YEAST Diphosphomevalonate decarboxylase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=MVD1 PE=1 SV=2 Back     alignment and function description
>sp|Q751D8|MVD1_ASHGO Diphosphomevalonate decarboxylase OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=MVD1 PE=3 SV=2 Back     alignment and function description
>sp|O13963|MVD1_SCHPO Diphosphomevalonate decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mvd1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
255560311415 diphosphomevalonate decarboxylase, putat 0.985 0.997 0.843 0.0
164604978415 diphosphomevelonate decarboxylase [Hevea 0.985 0.997 0.836 0.0
16417950415 mevalonate disphosphate decarboxylase [H 0.985 0.997 0.834 0.0
224110186416 predicted protein [Populus trichocarpa] 0.990 1.0 0.837 0.0
224097622416 predicted protein [Populus trichocarpa] 0.990 1.0 0.832 0.0
356575484421 PREDICTED: diphosphomevalonate decarboxy 0.992 0.990 0.819 0.0
225464152422 PREDICTED: diphosphomevalonate decarboxy 0.992 0.988 0.813 0.0
343466161418 diphosphomevalonate decarboxylase [Sirai 0.990 0.995 0.825 0.0
313507398421 mevalonate 5-diphosphate decarboxylase [ 0.988 0.985 0.822 0.0
356536371420 PREDICTED: diphosphomevalonate decarboxy 0.992 0.992 0.812 0.0
>gi|255560311|ref|XP_002521172.1| diphosphomevalonate decarboxylase, putative [Ricinus communis] gi|223539619|gb|EEF41203.1| diphosphomevalonate decarboxylase, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  727 bits (1877), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 351/416 (84%), Positives = 390/416 (93%), Gaps = 2/416 (0%)

Query: 3   AEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQ 62
           AE+WV MVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDP HLCTTTTVAVSP+FDQ
Sbjct: 2   AERWVRMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPAHLCTTTTVAVSPAFDQ 61

Query: 63  DRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPT 122
           DRMWLNGKEISL GGRYQNCL+EIR+RACDVED EKGIKI KKDW+KLH+HIASFNNFPT
Sbjct: 62  DRMWLNGKEISLSGGRYQNCLREIRARACDVEDKEKGIKIAKKDWEKLHVHIASFNNFPT 121

Query: 123 AAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGN 182
           AAGLASSAAGFACLVF+LAKLMN +E+ S+LSAIARQGSGSACRSLFGGFVKWI+GK  +
Sbjct: 122 AAGLASSAAGFACLVFALAKLMNAREDNSELSAIARQGSGSACRSLFGGFVKWIMGKVDD 181

Query: 183 GSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRI 242
           GSDSLAVQLVDE+HW+DLVIIIAVVSSRQKETSST+GMRESVETSLLLQHRAKEVVPKRI
Sbjct: 182 GSDSLAVQLVDEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSLLLQHRAKEVVPKRI 241

Query: 243 VQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGS 302
           +QMEEAI   DF+SFAQ+TCADSNQFHAVCLDT PPIFYMNDTSHRIIS VE+WNRS  +
Sbjct: 242 IQMEEAINKRDFASFAQITCADSNQFHAVCLDTCPPIFYMNDTSHRIISCVEKWNRSEET 301

Query: 303 PQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDG 362
           PQVAYTFDAGPNAVLIA+NRK A +LLQ+LL++FPPNS+TDLNSYVLGDKSIL+DAGI+ 
Sbjct: 302 PQVAYTFDAGPNAVLIAQNRKTAVQLLQKLLYYFPPNSDTDLNSYVLGDKSILKDAGIEE 361

Query: 363 MKDIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 418
           MKD+E+LP PPEI +  A ++ GDV+YFICTRPG GPVLL+D+S+ALLNP++GLPK
Sbjct: 362 MKDVESLPAPPEIKD--APRFKGDVSYFICTRPGRGPVLLTDESQALLNPQTGLPK 415

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|164604978|dbj|BAF98285.1| diphosphomevelonate decarboxylase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|16417950|gb|AAL18927.1|AF429386_1 mevalonate disphosphate decarboxylase [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|224110186|ref|XP_002315441.1| predicted protein [Populus trichocarpa] gi|222864481|gb|EEF01612.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224097622|ref|XP_002311015.1| predicted protein [Populus trichocarpa] gi|222850835|gb|EEE88382.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356575484|ref|XP_003555870.1| PREDICTED: diphosphomevalonate decarboxylase-like [Glycine max] Back     alignment and taxonomy information
>gi|225464152|ref|XP_002266399.1| PREDICTED: diphosphomevalonate decarboxylase [Vitis vinifera] gi|296087980|emb|CBI35263.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|343466161|gb|AEM42974.1| diphosphomevalonate decarboxylase [Siraitia grosvenorii] Back     alignment and taxonomy information
>gi|313507398|gb|ADR65113.1| mevalonate 5-diphosphate decarboxylase [Catharanthus roseus] Back     alignment and taxonomy information
>gi|356536371|ref|XP_003536712.1| PREDICTED: diphosphomevalonate decarboxylase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query420
TAIR|locus:2080265419 AT3G54250 [Arabidopsis thalian 0.995 0.997 0.770 4.6e-176
TAIR|locus:2064092412 MVD1 "mevalonate diphosphate d 0.978 0.997 0.749 1e-169
MGI|MGI:2179327401 Mvd "mevalonate (diphospho) de 0.942 0.987 0.483 4e-90
UNIPROTKB|P53602400 MVD "Diphosphomevalonate decar 0.947 0.995 0.467 2.2e-89
UNIPROTKB|Q642E5401 Mvd "Mevalonate (Diphospho) de 0.942 0.987 0.469 3.6e-89
RGD|621292401 Mvd "mevalonate (diphospho) de 0.942 0.987 0.469 4.6e-89
ZFIN|ZDB-GENE-041114-127400 zgc:100824 "zgc:100824" [Danio 0.921 0.967 0.469 4.1e-88
UNIPROTKB|Q0P570400 MVD "Diphosphomevalonate decar 0.938 0.985 0.451 8.6e-88
UNIPROTKB|E2QYJ9400 MVD "Uncharacterized protein" 0.947 0.995 0.463 1.4e-87
FB|FBgn0030683388 CG8239 [Drosophila melanogaste 0.902 0.976 0.454 4.4e-84
TAIR|locus:2080265 AT3G54250 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1710 (607.0 bits), Expect = 4.6e-176, P = 4.6e-176
 Identities = 323/419 (77%), Positives = 364/419 (86%)

Query:     1 MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF 60
             MA EKWV MVTAQTPTNIAVIKYWGKRDE  ILPVNDSISVTLDPDHLCT TTVAVSP+F
Sbjct:     1 MATEKWVFMVTAQTPTNIAVIKYWGKRDEVRILPVNDSISVTLDPDHLCTVTTVAVSPAF 60

Query:    61 DQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF 120
             D+DRMWLNGKEISL G RYQNCL+EIR RA DVED EKGIKI KKDW+KL+LHIAS NNF
Sbjct:    61 DRDRMWLNGKEISLSGSRYQNCLREIRGRAGDVEDMEKGIKIRKKDWEKLNLHIASHNNF 120

Query:   121 PTXXXXXXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKE 180
             PT            CLVFSLAKLMN+ E+ S LSAIARQGSGSACRSLFGGFVKW +G +
Sbjct:   121 PTAAGLASSAAGFACLVFSLAKLMNVDEDPSHLSAIARQGSGSACRSLFGGFVKWTMGSK 180

Query:   181 GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPK 240
              +GSDS+AVQL DE+HW+DLVIIIAVVSSRQKETSST+GMRESVETSLLLQHRAKEVVPK
Sbjct:   181 EDGSDSVAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSLLLQHRAKEVVPK 240

Query:   241 RIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV 300
             RI+QMEEAI+N DF+SF QLTC DSNQFHAVCLDTSPPIFYMNDTSHRIIS VE+WNRS 
Sbjct:   241 RILQMEEAIKNRDFASFTQLTCTDSNQFHAVCLDTSPPIFYMNDTSHRIISLVEKWNRSE 300

Query:   301 GSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGI 360
             G+PQVAYTFDAGPNAVLIARNRK+A +LLQ LL++FPP S+TD+ SYV+GD SIL++AG+
Sbjct:   301 GTPQVAYTFDAGPNAVLIARNRKVAVQLLQGLLYYFPPKSDTDMKSYVVGDNSILKEAGL 360

Query:   361 DGMKDIEALPLPPEI-NNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 418
             DG   +E L  PPEI +NI +Q   G+V+YFICTRPG GP++L D ++ALL+P++GLPK
Sbjct:   361 DGASGVENLQPPPEIKDNIGSQDQKGEVSYFICTRPGKGPIVLHDQTQALLDPETGLPK 419
GO:0004163 "diphosphomevalonate decarboxylase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA
GO:0005575 "cellular_component" evidence=ND
GO:0008299 "isoprenoid biosynthetic process" evidence=IEA
GO:0016126 "sterol biosynthetic process" evidence=RCA
GO:0019745 "pentacyclic triterpenoid biosynthetic process" evidence=RCA
TAIR|locus:2064092 MVD1 "mevalonate diphosphate decarboxylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
MGI|MGI:2179327 Mvd "mevalonate (diphospho) decarboxylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|P53602 MVD "Diphosphomevalonate decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q642E5 Mvd "Mevalonate (Diphospho) decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
RGD|621292 Mvd "mevalonate (diphospho) decarboxylase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-041114-127 zgc:100824 "zgc:100824" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q0P570 MVD "Diphosphomevalonate decarboxylase" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYJ9 MVD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0030683 CG8239 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q751D8MVD1_ASHGO4, ., 1, ., 1, ., 3, 30.45670.93090.9848yesno
Q99JF5MVD1_MOUSE4, ., 1, ., 1, ., 3, 30.50230.93800.9825yesno
O13963MVD1_SCHPO4, ., 1, ., 1, ., 3, 30.44860.91190.9745yesno
Q62967MVD1_RAT4, ., 1, ., 1, ., 3, 30.49280.93800.9825yesno
Q5U403MVD1_DANRE4, ., 1, ., 1, ., 3, 30.49390.92140.9675yesno
P32377MVD1_YEAST4, ., 1, ., 1, ., 3, 30.45100.92380.9797yesno
Q54YQ9MVD1_DICDI4, ., 1, ., 1, ., 3, 30.45630.90950.9769yesno
Q0P570MVD1_BOVIN4, ., 1, ., 1, ., 3, 30.47160.94040.9875yesno
P53602MVD1_HUMAN4, ., 1, ., 1, ., 3, 30.48690.94760.995yesno
Q6BY07MVD1_DEBHA4, ., 1, ., 1, ., 3, 30.46840.90950.9845yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.1.330.946
3rd Layer4.1.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
grail3.0106013901
diphosphomevalonate decarboxylase (EC-4.1.1.33) (417 aa)
(Populus trichocarpa)
Predicted Functional Partners:
eugene3.00060040
SubName- Full=Putative uncharacterized protein; (342 aa)
   • •• 0.946
IDI
SubName- Full=Putative chloroplast isopentenyl diphosphate isomerase; EC=5.3.3.2; Flags- Fragme [...] (234 aa)
•  • •• 0.939
estExt_Genewise1_v1.C_LG_III0996
hypothetical protein (493 aa)
     •• 0.904
estExt_Genewise1_v1.C_290342
SubName- Full=Putative uncharacterized protein; (496 aa)
     •  0.900
gw1.XV.832.1
hypothetical protein (236 aa)
     •  0.899
gw1.VII.3333.1
annotation not avaliable (311 aa)
     •  0.899
gw1.IV.3487.1
hypothetical protein (293 aa)
     •  0.899
gw1.II.860.1
hypothetical protein (306 aa)
     •  0.899
grail3.0137000601
hypothetical protein (134 aa)
     •  0.899
grail3.0045022601
hypothetical protein (259 aa)
     •  0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
PLN02407343 PLN02407, PLN02407, diphosphomevalonate decarboxyl 0.0
COG3407329 COG3407, MVD1, Mevalonate pyrophosphate decarboxyl 1e-94
TIGR01240305 TIGR01240, mevDPdecarb, diphosphomevalonate decarb 1e-91
pfam0028867 pfam00288, GHMP_kinases_N, GHMP kinases N terminal 6e-08
>gnl|CDD|178029 PLN02407, PLN02407, diphosphomevalonate decarboxylase Back     alignment and domain information 
 Score =  698 bits (1804), Expect = 0.0
 Identities = 288/343 (83%), Positives = 321/343 (93%), Gaps = 1/343 (0%)

Query: 7   VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
           V+MVTAQ PTNIAVIKYWGKRDE LILP+N SISVTLDPDHLC TTTVAVSPSFDQDR+W
Sbjct: 1   VVMVTAQAPTNIAVIKYWGKRDEKLILPINSSISVTLDPDHLCATTTVAVSPSFDQDRLW 60

Query: 67  LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 126
           LNGKEISL GGRYQNCL+EIR+RA DVED EKGIKI KKDW+KLH+HIAS+NNFPTAAGL
Sbjct: 61  LNGKEISLSGGRYQNCLREIRARATDVEDEEKGIKITKKDWEKLHVHIASYNNFPTAAGL 120

Query: 127 ASSAAGFACLVFSLAKLMNLKEN-QSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSD 185
           ASSAAGFACLVF+LAKLMN+KE+   +LSAIARQGSGSACRSL+GGFVKW +GK+ +GSD
Sbjct: 121 ASSAAGFACLVFALAKLMNVKEDFPGELSAIARQGSGSACRSLYGGFVKWNMGKKEDGSD 180

Query: 186 SLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQM 245
           S+AVQL DE+HW+DLVIIIAVVSSRQKETSST+GMRESVETS LLQHRAKEVVPKRI+QM
Sbjct: 181 SIAVQLADEKHWDDLVIIIAVVSSRQKETSSTSGMRESVETSPLLQHRAKEVVPKRILQM 240

Query: 246 EEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQV 305
           EEAI+N DF+SFA+LTCADSNQFHA CLDTSPPIFYMNDTS RIIS VE+WNRS G+PQV
Sbjct: 241 EEAIKNRDFASFAKLTCADSNQFHATCLDTSPPIFYMNDTSRRIISLVEKWNRSEGTPQV 300

Query: 306 AYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYV 348
           AYTFDAGPNAVLIA NRK+A +LLQRLL++FPP+S+TDL+SYV
Sbjct: 301 AYTFDAGPNAVLIALNRKVAAQLLQRLLYYFPPSSDTDLSSYV 343

Length = 343
>gnl|CDD|225941 COG3407, MVD1, Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>gnl|CDD|130307 TIGR01240, mevDPdecarb, diphosphomevalonate decarboxylase Back     alignment and domain information
>gnl|CDD|215839 pfam00288, GHMP_kinases_N, GHMP kinases N terminal domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 420
KOG2833395 consensus Mevalonate pyrophosphate decarboxylase [ 100.0
PLN02407343 diphosphomevalonate decarboxylase 100.0
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 100.0
COG3407329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 100.0
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 100.0
PTZ00299336 homoserine kinase; Provisional 100.0
PRK01212301 homoserine kinase; Provisional 99.98
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 99.97
PLN02451370 homoserine kinase 99.97
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.97
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.97
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.96
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.96
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.96
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.95
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.95
COG1947289 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p 99.95
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.95
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.95
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 99.95
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.94
PRK00650288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.94
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 99.94
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 99.94
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.93
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.92
PTZ00298328 mevalonate kinase; Provisional 99.92
PRK03926302 mevalonate kinase; Provisional 99.91
PRK05905258 hypothetical protein; Provisional 99.91
COG1907312 Predicted archaeal sugar kinases [General function 99.89
PRK04181257 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.88
PRK01123282 shikimate kinase; Provisional 99.86
PRK03817351 galactokinase; Provisional 99.85
PRK00555363 galactokinase; Provisional 99.83
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 99.83
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 99.83
TIGR00131386 gal_kin galactokinase. The galactokinases found by 99.81
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 99.81
PRK05322387 galactokinase; Provisional 99.8
COG1685278 Archaeal shikimate kinase [Amino acid transport an 99.79
PRK05101382 galactokinase; Provisional 99.78
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 99.77
COG0153390 GalK Galactokinase [Carbohydrate transport and met 99.73
PLN02677387 mevalonate kinase 99.62
PLN02521497 galactokinase 99.61
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 99.61
KOG1537355 consensus Homoserine kinase [Amino acid transport 99.58
PLN02865423 galactokinase 99.58
COG2605333 Predicted kinase related to galactokinase and meva 99.39
COG1829283 Predicted archaeal kinase (sugar kinase superfamil 99.38
PTZ00290468 galactokinase; Provisional 99.34
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 99.22
KOG1511397 consensus Mevalonate kinase MVK/ERG12 [Lipid trans 99.2
PF0028867 GHMP_kinases_N: GHMP kinases N terminal domain; In 99.19
COG4542293 PduX Protein involved in propanediol utilization, 99.09
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 98.74
KOG4644948 consensus L-fucose kinase [Carbohydrate transport 96.88
COG3890337 ERG8 Phosphomevalonate kinase [Lipid metabolism] 95.07
KOG0631489 consensus Galactokinase [Carbohydrate transport an 89.82
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.5e-110  Score=797.44  Aligned_cols=394  Identities=59%  Similarity=0.920  Sum_probs=363.8

Q ss_pred             cccceeEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHH
Q 014714            3 AEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNC   82 (420)
Q Consensus         3 ~~~~~~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~   82 (420)
                      +++++.++||+||+|||+||||||||+.+|||.|||||+||+||+|++.||+.++++|++|++||||+++++.++|.++|
T Consensus         1 ~~k~~~~~t~taPvNIAvIKYWGKRD~~l~LP~N~SISvTL~~D~L~t~Tt~~~s~~fe~dr~wLNGk~~~i~~~R~q~c   80 (395)
T KOG2833|consen    1 MDKPVAEVTATAPVNIAVIKYWGKRDEELNLPTNDSISVTLSQDDLCTLTTAVVSPSFEEDRMWLNGKEVPISNKRYQRC   80 (395)
T ss_pred             CCCcceeEEeeccceeeeeeeccccchhhcCCcCCceeEEeccccceeeeeEeeccccccceeEECCceeccccHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999989999999


Q ss_pred             HHHHHHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccC
Q 014714           83 LKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSG  162 (420)
Q Consensus        83 l~~~r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsG  162 (420)
                      ++++|++++..++++..  +  |....+++||.|+||||++|||+||||++||+++||+++|+++.+++||+.+||+|||
T Consensus        81 l~e~r~~~~d~~~~~~~--~--~~~~~~~lHI~S~nNFPtAAGLASSAAG~Aalv~alarly~l~~~~~els~iAR~GSG  156 (395)
T KOG2833|consen   81 LREIRRLARDREESEAS--L--PSNGPLKLHIASVNNFPTAAGLASSAAGFAALVLALARLYGLDDSPEELSRIARQGSG  156 (395)
T ss_pred             HHHHHHHhhhhhhhhcc--c--CcCCCeeEEEEecCCCcchhhhhhhhhhHHHHHHHHHHHhCCCCCHHHHHHHHhccCc
Confidence            99999999887655442  2  2234689999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHH
Q 014714          163 SACRSLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRI  242 (420)
Q Consensus       163 sa~~sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~  242 (420)
                      |||||+|||||.|.+|+..||+||.++|+.+..|||+++++|+|+++.+|+++||+|||++++||.++++|+++++++|+
T Consensus       157 SACRSl~GG~V~W~mG~~~DGsDsvAvq~~p~~~W~el~ililVvs~~~K~t~ST~GM~~sveTS~L~qhRi~~vVP~Ri  236 (395)
T KOG2833|consen  157 SACRSLYGGFVAWEMGELDDGSDSVAVQIAPSSHWPELRILILVVSDAKKKTGSTEGMRRSVETSQLLQHRIESVVPQRI  236 (395)
T ss_pred             hhhhhhhcceeEeecccccCCCceeEEEeccccCCCceEEEEEEeccccccccccHHHHHHHHHhHHHHHHHHhhhHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhcCCCcEEEeeCCCCceEEEeecc
Q 014714          243 VQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQVAYTFDAGPNAVLIARNR  322 (420)
Q Consensus       243 ~~l~~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~Ga~~~a~tsgAGPtv~~i~~~~  322 (420)
                      .+|.+||.++||+.|++++|.|||+||++|+|+||||+|||+.+++||+++|++|+..|...+|||||||||+++|+.++
T Consensus       237 ~~m~eaI~~rDF~~FA~lTm~DSNqFHAvclDT~PPI~YmNd~S~~iI~~vh~~N~~~G~t~vAYTFDAGPNAvl~~l~e  316 (395)
T KOG2833|consen  237 QQMREAIRERDFESFAKLTMKDSNQFHAVCLDTFPPIFYLNDTSWRIISLVHEFNASAGGTRVAYTFDAGPNAVLIVLEE  316 (395)
T ss_pred             HHHHHHHHhcCHHHHHHHHHhcchhhhhhhhccCCCeEEeccchHHHHHHHHHHHhccCCeeEEEEecCCCceEEEEhhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chHHHHHHHHHhhCCCCCCCCcCccccCccchhhhccCCCcccccCCCCCcccc-cccccccCCCcceEEEeCCCCCcee
Q 014714          323 KIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVL  401 (420)
Q Consensus       323 ~~~~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~t~vg~gp~~  401 (420)
                      +..+ +++.+.+.||...+|+ ..|..|+.+.++..+..           .+.. .+..   .++|+|||+|+||.||+ 
T Consensus       317 ~~~~-~l~~~~~~f~~~p~~d-k~y~~~~~~~~~~~~~~-----------~~~~~~l~~---~~~vs~~I~t~vG~GP~-  379 (395)
T KOG2833|consen  317 NVSQ-LLAAVLKVFPPVPGWD-KTYGKGLLEQFKVAAES-----------SSIKDSLGS---QGGVSYIILTRVGGGPK-  379 (395)
T ss_pred             hHHH-HHHHHHHhcCCCCCcc-ceeeeccccccCccccc-----------cchhhhccc---cCCeeEEEEecCCCCCc-
Confidence            9998 9999999999999988 77777765444422221           1211 2222   39999999999999999 


Q ss_pred             cCCCcccccCCCCCCCC
Q 014714          402 LSDDSKALLNPKSGLPK  418 (420)
Q Consensus       402 ~~~~~~~l~~~~~~~~~  418 (420)
                      |.++.++|||+ .||||
T Consensus       380 l~~~~~~Li~~-~GlPk  395 (395)
T KOG2833|consen  380 LQEQNESLIDP-SGLPK  395 (395)
T ss_pred             ccCchhhhcCC-CCCCC
Confidence            77788999998 59997

>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>PRK05905 hypothetical protein; Provisional Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>PRK04181 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>PLN02521 galactokinase Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02865 galactokinase Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>COG1829 Predicted archaeal kinase (sugar kinase superfamily) [General function prediction only] Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism] Back     alignment and domain information
>PF00288 GHMP_kinases_N: GHMP kinases N terminal domain; InterPro: IPR006204 The galacto- (2 Back     alignment and domain information
>COG4542 PduX Protein involved in propanediol utilization, and related proteins (includes coumermycin biosynthetic protein), possible kinase [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG3890 ERG8 Phosphomevalonate kinase [Lipid metabolism] Back     alignment and domain information
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
3d4j_A400 Crystal Structure Of Human Mevalonate Diphosphate D 1e-97
3f0n_A414 Mus Musculus Mevalonate Pyrophosphate Decarboxylase 2e-97
1fi4_A416 The X-Ray Crystal Structure Of Mevalonate 5-Diphosp 2e-79
2hke_A380 Mevalonate Diphosphate Decarboxylase From Trypanoso 8e-59
3qt5_A332 Crystal Structure Of Staphylococcus Epidermidis Mev 3e-36
3qt8_A332 Crystal Structure Of Mutant S192a Staphylococcus Ep 7e-36
2hk2_A331 Crystal Structure Of Mevalonate Diphosphate Decarbo 1e-35
4dpw_A332 Crystal Structure Of Staphylococcus Epidermidis D28 3e-35
3lto_A323 Crystal Structure Of A Mevalonate Diphosphate Decar 7e-18
2gs8_A317 Structure Of Mevalonate Pyrophosphate Decarboxylase 3e-09
>pdb|3D4J|A Chain A, Crystal Structure Of Human Mevalonate Diphosphate Decarboxylase Length = 400 Back     alignment and structure 
Iteration: 1

 Score =  353 bits (905), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 194/421 (46%), Positives = 254/421 (60%), Gaps = 23/421 (5%)
Query: 1   MAAEKWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSF 60
           MA+EK +  VT   P NIAVIKYWGKRDE L+LP+N S+SVTL  D L TTTT  +S  F
Sbjct: 1   MASEKPLAAVTCTAPVNIAVIKYWGKRDEELVLPINSSLSVTLHQDQLKTTTTAVISKDF 60
Query: 61  DQDRMWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNF 120
            +DR+WLNG+E  +G  R Q CL+EIR  A    ++  G  +         +H+AS NNF
Sbjct: 61  TEDRIWLNGREEDVGQPRLQACLREIRCLARKRRNSRDGDPLPSS--LSCKVHVASVNNF 118
Query: 121 PTXXXXXXXXXXXXCLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKE 180
           PT            CL ++LA++  +   +S LS +AR+GSGSACRSL+GGFV+W +G++
Sbjct: 119 PTAAGLASSAAGYACLAYTLARVYGV---ESDLSEVARRGSGSACRSLYGGFVEWQMGEQ 175
Query: 181 GNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPK 240
            +G DS+A Q+  E HW +L ++I VVS+ +K T ST GMR SVETS LL+ RA+ VVP 
Sbjct: 176 ADGKDSIARQVAPESHWPELRVLILVVSAEKKLTGSTVGMRASVETSPLLRFRAESVVPA 235
Query: 241 RIVQMEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV 300
           R+ +M   I+  DF SFAQLT  DSNQFHA CLDT PPI Y+N  S RII  V R+N   
Sbjct: 236 RMAEMARCIRERDFPSFAQLTMKDSNQFHATCLDTFPPISYLNAISWRIIHLVHRFNAHH 295
Query: 301 GSPQVAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGI 360
           G  +VAYTFDAGPNAV+   +  +A E +  +   FPP S                D  +
Sbjct: 296 GDTKVAYTFDAGPNAVIFTLDDTVA-EFVAAVWHGFPPGSNG--------------DTFL 340
Query: 361 DGMKDIEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPKE 419
            G++ +   PL  E+   ++ +   G V Y I T+ G GP +L D    LL P  GLPK 
Sbjct: 341 KGLQ-VRPAPLSAELQAALAMEPTPGGVKYIIVTQVGPGPQILDDPCAHLLGP-DGLPKP 398
Query: 420 A 420
           A
Sbjct: 399 A 399
>pdb|3F0N|A Chain A, Mus Musculus Mevalonate Pyrophosphate Decarboxylase Length = 414 Back     alignment and structure
>pdb|1FI4|A Chain A, The X-Ray Crystal Structure Of Mevalonate 5-Diphosphate Decarboxylase At 2.3 Angstrom Resolution Length = 416 Back     alignment and structure
>pdb|2HKE|A Chain A, Mevalonate Diphosphate Decarboxylase From Trypanosoma Brucei Length = 380 Back     alignment and structure
>pdb|3QT5|A Chain A, Crystal Structure Of Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Length = 332 Back     alignment and structure
>pdb|3QT8|A Chain A, Crystal Structure Of Mutant S192a Staphylococcus Epidermidis Mevalonate Diphosphate Decarboxylase Complexed With Inhibitor 6- Fmvapp Length = 332 Back     alignment and structure
>pdb|2HK2|A Chain A, Crystal Structure Of Mevalonate Diphosphate Decarboxylase From Staphylococcus Aureus (Monoclinic Form) Length = 331 Back     alignment and structure
>pdb|4DPW|A Chain A, Crystal Structure Of Staphylococcus Epidermidis D283a Mevalonate Diphosphate Decarboxylase Complexed With Mevalonate Diphosphate And Atpgs Length = 332 Back     alignment and structure
>pdb|3LTO|A Chain A, Crystal Structure Of A Mevalonate Diphosphate Decarboxylase From Legionella Pneumophila Length = 323 Back     alignment and structure
>pdb|2GS8|A Chain A, Structure Of Mevalonate Pyrophosphate Decarboxylase From Streptococcus Pyogenes Length = 317 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query420
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 1e-139
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 1e-131
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 1e-126
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 8e-90
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 1e-87
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 5e-82
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-05
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 8e-08
3k17_A365 LIN0012 protein; protein structure initiative II(P 3e-06
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 7e-06
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 1e-05
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 4e-05
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 4e-04
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Length = 414 Back     alignment and structure
 Score =  403 bits (1037), Expect = e-139
 Identities = 203/414 (49%), Positives = 258/414 (62%), Gaps = 21/414 (5%)

Query: 5   KWVLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDR 64
              LMVT   P NIAVIKYWGKRDE LILP+N S+SVTL  D L TTTTVA+S  F +DR
Sbjct: 19  PQDLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDR 78

Query: 65  MWLNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAA 124
           +WLNG+E  +G  R Q CL+EIR  A     TE G  +         +H+AS NNFPTAA
Sbjct: 79  IWLNGREEDVGQPRLQACLREIRRLARKRRSTEDGDTLPLSLSY--KVHVASVNNFPTAA 136

Query: 125 GLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGS 184
           GLASSAAG+ACL ++LA++  ++ +   LS +AR+GSGSACRSL+GGFV+W +G++ +G 
Sbjct: 137 GLASSAAGYACLAYTLAQVYGVEGD---LSEVARRGSGSACRSLYGGFVEWQMGEQADGK 193

Query: 185 DSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQ 244
           DS+A Q+  E HW  L I+I VVS+ +K+T ST GM+ SVETS LL+ RA+ VVP+R+ +
Sbjct: 194 DSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKE 253

Query: 245 MEEAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSVGSPQ 304
           M   IQ  DF  FAQLT  DSNQFHA CLDT PPI Y+NDTS RII  V R+N   G  +
Sbjct: 254 MTRCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTK 313

Query: 305 VAYTFDAGPNAVLIARNRKIATELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMK 364
           VAYTFDAGPNAV+      +A E +  +   FPP +  D                + G++
Sbjct: 314 VAYTFDAGPNAVIFTLEDTVA-EFVAAVRHSFPPAANGDKF--------------LKGLQ 358

Query: 365 DIEALPLPPEINNISAQKYSGDVNYFICTRPGGGPVLLSDDSKALLNPKSGLPK 418
               L        +  +   G V Y I T+ G GP +L D    LL    GLP+
Sbjct: 359 VAPVLLSDELKAALVVEPSPGGVQYIIATQVGPGPQVLDDTHDHLLGQ-DGLPQ 411
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Length = 416 Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Length = 380 Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 3qt8_A* 2hk2_A 2hk3_A Length = 332 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Length = 323 Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Length = 317 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query420
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 100.0
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 100.0
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 100.0
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 100.0
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 100.0
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 100.0
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 99.98
1h72_C296 HK, homoserine kinase; transferase, threonine bios 99.97
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.97
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.96
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 99.95
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 99.95
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.94
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 99.93
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 99.93
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 99.93
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 99.93
1pie_A419 Galactokinase; galactose, galactosemia, transferas 99.92
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 99.91
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 99.9
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 99.9
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 99.87
3k17_A365 LIN0012 protein; protein structure initiative II(P 99.87
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 99.85
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 99.83
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 99.83
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 99.47
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure
Probab=100.00  E-value=6.9e-88  Score=683.60  Aligned_cols=390  Identities=52%  Similarity=0.842  Sum_probs=339.7

Q ss_pred             eeEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHH
Q 014714            7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEI   86 (420)
Q Consensus         7 ~~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~   86 (420)
                      ..++||+||+||||||||||||++++||.|+|||+||++++|+|+|+|++++++++|++||||++++...+|+++|++++
T Consensus        21 ~~~~t~~A~~NIAlIKYWGKrd~~l~lP~n~SiS~TL~~~~l~T~TtV~~s~~~~~D~i~LNG~~~~~~~~ri~~~l~~i  100 (414)
T 3f0n_A           21 DLMVTCTAPVNIAVIKYWGKRDEALILPINSSLSVTLHQDQLKTTTTVAISKDFTEDRIWLNGREEDVGQPRLQACLREI  100 (414)
T ss_dssp             CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCEEEETTEEECTTCHHHHHHHHHH
T ss_pred             CceEEEEecccchhhhhcccccccccCCCCCceEEEecCCCceEEEEEEEecCCCceEEEECCEecCcccHHHHHHHHHH
Confidence            36799999999999999999999999999999999999999999999999998888999999998776678999999999


Q ss_pred             HHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 014714           87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR  166 (420)
Q Consensus        87 r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~  166 (420)
                      |++++..+..+.+.  ..|.+...+++|+++|+||+++|||||||++||+++|+|++|++   .++|+++|++|+||+||
T Consensus       101 R~~~~~~~~~~~~~--~~~~~~~~~~~I~~~~~iP~aaGLgSSaA~~aA~~~a~n~l~~l---~~el~~lA~~~sGs~~~  175 (414)
T 3f0n_A          101 RRLARKRRSTEDGD--TLPLSLSYKVHVASVNNFPTAAGLASSAAGYACLAYTLAQVYGV---EGDLSEVARRGSGSACR  175 (414)
T ss_dssp             HHHHHC-------C--CHHHHHHSCEEEEEEECCCGGGCCCHHHHHHHHHHHHHHHHHTC---CSCCHHHHHHHCGGGGG
T ss_pred             HHHhcccccccccc--cccccccCcEEEEEEeCCCCCcCcchhHHHHHHHHHHHHHHhCC---hHHHHHHHHHhCCCcch
Confidence            99987642111110  11234467999999999999999999999999999999999998   46999999999999999


Q ss_pred             ccccCeEEEecccCCCCCCceEEEccCCCCCCCceEEEEEECCCCCccCchHHhhhhhccchhHHHHHhhhchHHHHHHH
Q 014714          167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWNDLVIIIAVVSSRQKETSSTTGMRESVETSLLLQHRAKEVVPKRIVQME  246 (420)
Q Consensus       167 sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp~l~~vvlvv~~~~k~vsst~~m~~~~~ts~~~~~~~~~~~~~~~~~l~  246 (420)
                      |+|||||+|..+...++.++++++++++.|||+++++++++|..+|+++||++|++++++++++++|+.+++..++..|+
T Consensus       176 s~~GG~v~w~~~~~~d~~ds~a~~i~~~~~wp~L~ivvlv~~~~~K~vsST~~mr~~l~ts~~~~~~v~~~~~~~~~~l~  255 (414)
T 3f0n_A          176 SLYGGFVEWQMGEQADGKDSIARQIAPEWHWPQLRILILVVSADKKQTGSTVGMQTSVETSTLLKFRAESVVPERMKEMT  255 (414)
T ss_dssp             GGSSSEEEECCCSCTTCTTCCEEEEECTTSCTTEEEEEEEESCCC-CCCHHHHHHHHHHHCHHHHHHHHHTHHHHHHHHH
T ss_pred             HhhCCEEEEEeccCCCCCceEEEEcccccCCCCceEEEEEeCccccCCCchHHHHhhcccCccHHHHHHHHHHHHHHHHH
Confidence            99999999988866677889999998778999999999999999999999999999999999999999874588999999


Q ss_pred             HHHHcCCHHHHHHHHHhhhhhhhhhccccCCCccccCchHHHHHHHHHHHHHhc-CCCcEEEeeCCCCceEEEeeccchH
Q 014714          247 EAIQNHDFSSFAQLTCADSNQFHAVCLDTSPPIFYMNDTSHRIISYVERWNRSV-GSPQVAYTFDAGPNAVLIARNRKIA  325 (420)
Q Consensus       247 ~Al~~~D~~~f~~~~~~dsn~lha~~~~~~p~~~yl~~~s~~ii~~v~~~~~~~-Ga~~~a~tsgAGPtv~~i~~~~~~~  325 (420)
                      .||.++||+.|++++|+|+++||++|++++||++||+|.+.++++.++++++.. |+. ++||||||||+++|+++++.+
T Consensus       256 ~AL~~gD~~~~g~l~e~Ds~~lHa~~~~s~P~~~yl~p~s~~ii~~v~~~r~~~~g~~-~~~tsdAGPnv~vl~~~~~~~  334 (414)
T 3f0n_A          256 RCIQEQDFQGFAQLTMKDSNQFHATCLDTFPPISYLNDTSRRIIQLVHRFNTHHGQTK-VAYTFDAGPNAVIFTLEDTVA  334 (414)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSCCCCCCHHHHHHHHHHHHHHHHHTSCC-EEEECCSSSCEEEEEEHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHHHhccCCCeeeeCccHHHHHHHHHHHHHhcCCce-EEEEECCCCCEEEEEecccHH
Confidence            999999999999999999999999999999999999999999999999987654 676 899999999999999998888


Q ss_pred             HHHHHHHHhhCCCCCCCCcCccccCccchhhhccCCCcccccCCCCCcccc-cccccccCCCcceEEEeCCCCCceecCC
Q 014714          326 TELLQRLLFFFPPNSETDLNSYVLGDKSILRDAGIDGMKDIEALPLPPEIN-NISAQKYSGDVNYFICTRPGGGPVLLSD  404 (420)
Q Consensus       326 ~~v~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~t~vg~gp~~~~~  404 (420)
                      + +.+.|++.|++..+|+  .|++|.+             +....+++++. .+..++.+++|+|||||+||+||+++++
T Consensus       335 ~-v~~~l~~~f~~~~~~~--~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~i~t~~g~gp~~~~~  398 (414)
T 3f0n_A          335 E-FVAAVRHSFPPAANGD--KFLKGLQ-------------VAPVLLSDELKAALVVEPSPGGVQYIIATQVGPGPQVLDD  398 (414)
T ss_dssp             H-HHHHHHHHSCCSCC----CCEEESC-------------CCCCCCCHHHHHHSCSSCCTTSEEEEEEEEBCCCCEEECC
T ss_pred             H-HHHHHHHhcCCCCCcc--cccccCc-------------cccccCChhhhhcccccccCCceeEEEECCCCCCCEECCc
Confidence            7 9999999999876654  3444432             33333445555 5556668999999999999999999998


Q ss_pred             CcccccCCCCCCCCC
Q 014714          405 DSKALLNPKSGLPKE  419 (420)
Q Consensus       405 ~~~~l~~~~~~~~~~  419 (420)
                      +++||||+ +|+|+.
T Consensus       399 ~~~~l~~~-~g~~~~  412 (414)
T 3f0n_A          399 THDHLLGQ-DGLPQR  412 (414)
T ss_dssp             GGGCSBCT-TSSBC-
T ss_pred             hhHhcCCC-CCCcCC
Confidence            89999995 999985
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 420
d1fi4a1188 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarb 5e-82
d1fi4a2203 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate dec 6e-65
d1h72c1163 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Met 5e-04
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 188 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  247 bits (633), Expect = 5e-82
 Identities = 98/191 (51%), Positives = 127/191 (66%), Gaps = 4/191 (2%)

Query: 7   VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMW 66
           V   +   P NIA +KYWGKRD  L LP N SISVTL  D L T T+ A +P F++D +W
Sbjct: 1   VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLW 60

Query: 67  LNGKEISLGGGRYQNCLKEIRSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGL 126
           LNG+  S+   R QNCL+++R    ++E  +  +        +  LHI S NNFPTAAGL
Sbjct: 61  LNGEPHSIDNERTQNCLRDLRQLRKEMESKDASLP----TLSQWKLHIVSENNFPTAAGL 116

Query: 127 ASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACRSLFGGFVKWILGKEGNGSDS 186
           ASSAAGFA LV ++AKL  L ++ S++S IAR+GSGSACRSLFGG+V W +GK  +G DS
Sbjct: 117 ASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACRSLFGGYVAWEMGKAEDGHDS 176

Query: 187 LAVQLVDEEHW 197
           +AVQ+ D   W
Sbjct: 177 MAVQIADSSDW 187
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 203 Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 163 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query420
d1fi4a1188 Mevalonate 5-diphosphate decarboxylase {Baker's ye 100.0
d1fi4a2203 Mevalonate 5-diphosphate decarboxylase {Baker's ye 100.0
d1h72c1163 Homoserine kinase {Archaeon Methanococcus jannasch 99.9
d1ueka1148 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.67
d1oj4a1163 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 99.66
d1kkha1180 Mevalonate kinase {Archaeon Methanococcus jannasch 99.49
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 99.42
d1k47a1194 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.37
d1s4ea1176 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 99.32
d1piea1205 Galactokinase {Lactococcus lactis [TaxId: 1358]} 99.18
d1kvka1225 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.08
d1wuua1215 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 99.04
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 98.21
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 97.79
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 97.61
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 97.6
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 96.87
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 96.66
d1oj4a2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 96.43
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 96.33
>d1fi4a1 d.14.1.5 (A:3-190) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S5 domain 2-like
superfamily: Ribosomal protein S5 domain 2-like
family: GHMP Kinase, N-terminal domain
domain: Mevalonate 5-diphosphate decarboxylase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.8e-52  Score=381.56  Aligned_cols=188  Identities=52%  Similarity=0.868  Sum_probs=170.6

Q ss_pred             eeEEEEEecceeEEEeeeccccCCCCCCCCCeeEeeeCCCCceeEEEEEEcCCCCcceEEEcCccccCCcchHHHHHHHH
Q 014714            7 VLMVTAQTPTNIAVIKYWGKRDETLILPVNDSISVTLDPDHLCTTTTVAVSPSFDQDRMWLNGKEISLGGGRYQNCLKEI   86 (420)
Q Consensus         7 ~~~~~~~Ap~nIa~ikywGkrd~~~~lP~~dSisvtL~~~~L~~~t~v~~~~~~~~d~i~lnG~~~~~~~~r~~~~l~~~   86 (420)
                      |+++||+||+||||||||||||+.++||.|+|||+||++++++|+|+|+.++++++|++++||++.+...+|+++|++.+
T Consensus         1 ~~~~t~~apsNIALiKYWGK~d~~~~lP~n~SiS~TL~~~~~~T~t~v~~~~~~~~d~~~lnG~~~~~~~~~~~~~~~~l   80 (188)
T d1fi4a1           1 VYTASVTAPVNIATLKYWGKRDTKLNLPTNSSISVTLSQDDLRTLTSAATAPEFERDTLWLNGEPHSIDNERTQNCLRDL   80 (188)
T ss_dssp             CEEEEEEECCEEEEECCCCEEETTTTEESSCEEEEEBCTTTSCEEEEEEECTTCCSCBCTTTCCBSSSSSSSHHHHHHHH
T ss_pred             CeEEEEEccCcEEEEEeccccCcccCCCCCCeEEEEecCCCcEEEEEEEeCCCCcccceeECCeecccchHHHHHHHHHH
Confidence            57899999999999999999999999999999999999989999999999998889999999998877788999999988


Q ss_pred             HHHccccccccccccccccccccccEEEEEecCCCCccccccchHHHHHHHHHHHHHhCCCCCHHHHHHHHHhccCcccc
Q 014714           87 RSRACDVEDTEKGIKIEKKDWQKLHLHIASFNNFPTAAGLASSAAGFACLVFSLAKLMNLKENQSQLSAIARQGSGSACR  166 (420)
Q Consensus        87 r~~~~~~~~~~~~~~~~~~~~~~~~v~I~s~nniP~aaGLGSSAA~~aA~v~Al~~l~~l~ls~~eL~~iAr~gsGsa~~  166 (420)
                      |++.+..+.....    .|.+...+++|+++|+||+++|||||||++||++.|++++++++++.++++.+||+|||||||
T Consensus        81 ~~~~~~~~~~~~~----~p~~~~~~~~I~S~N~FP~aaGLASSAsg~aAl~~al~~~~~~~~~~~~~S~lARlGSGSAcR  156 (188)
T d1fi4a1          81 RQLRKEMESKDAS----LPTLSQWKLHIVSENNFPTAAGLASSAAGFAALVSAIAKLYQLPQSTSEISRIARKGSGSACR  156 (188)
T ss_dssp             HHHHHHHHTTCTT----SCCGGGSCEEEEEEECCCTTSCCCHHHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHGGGGG
T ss_pred             HHHHHHHhccccc----CcccccceEEEEecCCCcchhhHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHhhccchhh
Confidence            8775543221111    133456789999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCeEEEecccCCCCCCceEEEccCCCCCC
Q 014714          167 SLFGGFVKWILGKEGNGSDSLAVQLVDEEHWN  198 (420)
Q Consensus       167 sl~GG~V~~~~g~~~~g~ds~a~~i~~~~~wp  198 (420)
                      |+|||||.|..|...||.|++++++.++.|||
T Consensus       157 Si~Gg~v~W~~g~~~dg~d~~a~~~~~~~hWp  188 (188)
T d1fi4a1         157 SLFGGYVAWEMGKAEDGHDSMAVQIADSSDWP  188 (188)
T ss_dssp             GGSSSEEEEECCSCTTCTTCEEEEEECGGGST
T ss_pred             hhcCCeeEeccCCCCCCCceeEEECCCccCCC
Confidence            99999999999988899999999999999998
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1h72c1 d.14.1.5 (C:5-167) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ueka1 d.14.1.5 (A:1-148) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oj4a1 d.14.1.5 (A:1-163) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kkha1 d.14.1.5 (A:1-180) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a1 d.14.1.5 (A:1-194) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1s4ea1 d.14.1.5 (A:5-180) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1piea1 d.14.1.5 (A:9-213) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1kvka1 d.14.1.5 (A:1-225) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1wuua1 d.14.1.5 (A:2-216) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure