Citrus Sinensis ID: 014817

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------42
Protein Sequence
MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSEVVPF
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHcccHHHHHHHHccccccHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccEHHcccccEEEEccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccHHcHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHccHHHHHHHHHcHcHHHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccccccccccEEEEEcc
Coil and Loop (DISEMBL)
mpgslepldlsvqipyhfrcpislelmcdpvtvctgqtydrpsieswvatgnttcpvtrspltdftlipnhtLRRLIQDWCVAnrsfgvqriptpkqpaepsLVRTLLNQassesntyGSRLSALRRLRGlardsdknrslissHNVRAILSQVFFTninvktasspelAHESLALLVmfpltetecMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNlssyprglKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRdswpqdsignsddfacsevvpf
Flexible Loop (DISEMBL)
mpgslepldlsvQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATgnttcpvtrspltDFTLIPNHTLRRLIQDWCVANRSFGvqriptpkqpaepSLVRTLLNQassesntygsrlsaLRRLRGlardsdknrslisshnvRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLrdswpqdsignsddfacsevvpf
Low Complexity Region (SEG)
MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYgsrlsalrrlrglarDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYaagalaalcsasERCQRDAVSAGVLTQLLLLVQSDCTDrakrkaqlllkllrDSWPQDSIGNSDDFACSEVVPF
Disordered region (IsUnstruct)
********DLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQR**************************************************ISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP******************
Disordered Region (DISOPRED)
**************PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLL***************ALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN******PELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK*********KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQ******AKRKAQLLLKL*****************CSEVVPF
Disordered Region (DISEMBL)
MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQA*********RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSEVVPF
Disordered Region (DISPRO)
**********SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGV*********AEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSEVVPF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSEVVPF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	418	2.2.26 [Sep-21-2011]
Q9FXA4	421	U-box domain-containing p	yes	no	0.997	0.990	0.687	1e-158
Q9LT79	421	U-box domain-containing p	no	no	0.988	0.980	0.673	1e-154
Q84TG3	411	E3 ubiquitin-protein liga	no	no	0.913	0.929	0.327	3e-50
Q9SVC6	435	E3 ubiquitin-protein liga	no	no	0.916	0.880	0.299	2e-45
Q5PNY6	435	U-box domain-containing p	no	no	0.899	0.864	0.322	7e-45
Q9C8D1	431	U-box domain-containing p	no	no	0.875	0.849	0.273	4e-38
Q5VRH9	611	U-box domain-containing p	no	no	0.889	0.608	0.320	1e-35
Q8GUG9	612	U-box domain-containing p	no	no	0.849	0.580	0.328	1e-35
Q9SNC6	660	U-box domain-containing p	no	no	0.861	0.545	0.337	9e-35
Q058P4	448	U-box domain-containing p	no	no	0.882	0.823	0.302	1e-33

>sp|Q9FXA4|PUB26_ARATH U-box domain-containing protein 26 OS=Arabidopsis thaliana GN=PUB26 PE=2 SV=1

 Score =  559 bits (1441), Expect = e-158,   Method: Compositional matrix adjust.
 Identities = 290/422 (68%), Positives = 348/422 (82%), Gaps = 5/422 (1%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60
           MPG+LEPLDL +QIPYHFRCPISL+LM DPVT+ TGQTYDR SI+SW+A GNTTCPVTR 
Sbjct: 1   MPGNLEPLDLGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRV 60

Query: 61  PLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTY-- 118
            L+DFTLIPNHTLRRLIQ+WCVANRS GV+RIPTPKQPA+P  VR+LL+QAS+ + T+  
Sbjct: 61  ALSDFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVS 120

Query: 119 -GSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALL 177
             SR +A+RRLRGLARDS+KNR LI+ HN R IL ++ F +I   T+ S EL  ESLALL
Sbjct: 121 VRSRAAAIRRLRGLARDSEKNRVLIAGHNAREILVRILFADIET-TSLSSELVSESLALL 179

Query: 178 VMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN 237
           V+  +TETEC  +ASD  ++  ++ LLF SSIE+RVN+AALIE+VL G +S +L+  IS 
Sbjct: 180 VLLHMTETECEAVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVLTGAKSMDLKLIISG 239

Query: 238 LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA-DFD 296
            D IFEGV+D+LKN  S  R LK+GIKA+FALCLVKQTR+ A++AGA   L+DRLA DFD
Sbjct: 240 SDSIFEGVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFD 299

Query: 297 KCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS 356
           +CD ER LATVELLCR+P GCA F EHALTVPL+VKTIL++SDRATEYAAGAL ALC+A 
Sbjct: 300 RCDTERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALCTAE 359

Query: 357 ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSEVV 416
           ERC+ +A +AG++TQLLLLVQSDCT+RAKRKAQ+LLKLLRDSWP DS  +SDDF  SEV 
Sbjct: 360 ERCRDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDDSTVHSDDFNRSEVA 419

Query: 417 PF 418
           PF
Sbjct: 420 PF 421

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9LT79|PUB25_ARATH U-box domain-containing protein 25 OS=Arabidopsis thaliana GN=PUB25 PE=2 SV=1

 Score =  545 bits (1403), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 287/426 (67%), Positives = 341/426 (80%), Gaps = 13/426 (3%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGN-TTCPVTR 59
           MP ++EPLDL +QIPYHFRCPISLELM DPVTVCTGQTYDR SIESWV+ GN TTCPVTR
Sbjct: 1   MPRNIEPLDLGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTR 60

Query: 60  SPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTY- 118
           +PL+DFTLIPNHTLRRLIQ+WCVANRS GV+RIPTPKQPA+P+ VR LL+QAS+ + T+ 
Sbjct: 61  APLSDFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHV 120

Query: 119 --GSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLAL 176
              SR +ALRRLRG ARDSDKNR LI++HN   IL ++ F+       +S EL  ESLAL
Sbjct: 121 SVRSRAAALRRLRGFARDSDKNRVLIAAHNATEILIKILFSE-----TTSSELVSESLAL 175

Query: 177 LVMFPLTE-TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQI 235
           LVM P+TE  + + I+SD  ++  L+ LLF SSIE RVN+AALIEIV  G +S +L+  I
Sbjct: 176 LVMLPITEPNQFVSISSDPGRVEFLTRLLFDSSIETRVNAAALIEIVSTGTKSADLKGSI 235

Query: 236 SNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA-D 294
           SN + +FEGV+D+L+N  S  R LK+GIK LFALC VK TR+ A+ AGA E L+DRLA D
Sbjct: 236 SNSESVFEGVLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAAD 295

Query: 295 FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS 354
           FD+CD ERALATVELLCR P GCA F EHALTVPLLVKTIL++SDRATEYAAGAL ALC+
Sbjct: 296 FDRCDTERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCT 355

Query: 355 ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQ-DSIGNSDDFAC- 412
           A ER + +A  AGV+ QLLL+VQS+CT+RAK+KAQ LLKLLRDSWP  +S  NSDDF C 
Sbjct: 356 AEERWREEAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRDSWPDYNSFANSDDFGCS 415

Query: 413 SEVVPF 418
           S+VVPF
Sbjct: 416 SQVVPF 421

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q84TG3|PUB23_ARATH E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana GN=PUB23 PE=1 SV=1

 Score =  199 bits (507), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 135/412 (32%), Positives = 215/412 (52%), Gaps = 30/412 (7%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGN-TTCPVTR 59
           M G +  +D  ++IP  F CPISLE+M DPV V TG TYDR SIE W+  G   +CPVT+
Sbjct: 1   MSGGI--MDEEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTK 58

Query: 60  SPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYG 119
             +TD  L PNHTLRRLIQ WC  N S+GV+RIPTP+ P   S +  L+  ++S   ++ 
Sbjct: 59  QDITDADLTPNHTLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRDSAS---SHE 115

Query: 120 SRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM 179
           +++  L+RLR +  ++  N+  + +  V       F  NI    + +  L  E+L LL  
Sbjct: 116 NQVKCLKRLRQIVSENATNKRCLEAAGVPE-----FLANIVSNDSENGSLTDEALNLLYH 170

Query: 180 FPLTETECMEIASDADK---ITSLSSLLFHSSIEVRVNSAALIEIVLA---GMRSQELRA 233
              +ET    + ++      + SL+ ++     E RV +  L++ +L     M+S  L+ 
Sbjct: 171 LETSETVLKNLLNNKKDNNIVKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLKP 230

Query: 234 QISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA 293
                 E+F  V+ IL +  S  +  K  +  L  +C   + R+KAV AG    +++ L 
Sbjct: 231 ------EVFTEVVQILDDRISQ-KATKAAMHILVNICPWGRNRHKAVEAGVISVIIELLM 283

Query: 294 D----FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGAL 349
           D     ++   E A+  ++LLC+   G AEF  H   + ++ K IL++S  A++ A   L
Sbjct: 284 DESFTSERRGPEMAMVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVL 343

Query: 350 AALCS--ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW 399
            ++    A+     + +  GV+ +L L++Q  C  + K KA+ LLKL    W
Sbjct: 344 LSVGRFCATPALLHEMLQLGVVAKLCLVLQVSCGGKTKEKAKELLKLHARVW 395

E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB22 and PUB24.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SVC6|PUB22_ARATH E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana GN=PUB22 PE=1 SV=1

 Score =  183 bits (465), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 128/428 (29%), Positives = 220/428 (51%), Gaps = 45/428 (10%)

Query: 8   LDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGN-TTCPVTRSPLTDFT 66
           +D  ++IP  F CPISL++M DPV V TG TYDR SIE W+ +G   +CPVT+  +T+  
Sbjct: 1   MDQEIEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETD 60

Query: 67  LIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGSRLSALR 126
           L PNHTLRRLIQ WC  N S+G++RIPTPK P   S +  L+ ++SS   ++ +++  L+
Sbjct: 61  LTPNHTLRRLIQSWCTLNASYGIERIPTPKPPICKSEIEKLIKESSS---SHLNQVKCLK 117

Query: 127 RLRGLARDSDKNRSLISSHNVRAILSQVFFTNINV------------------------K 162
           RLR +  ++  N+  + +  V   L+ +   +++                         +
Sbjct: 118 RLRQIVSENTTNKRCLEAAEVPEFLANIVSNSVDTYNSPSSSLSSSNLNDMCQSNMLENR 177

Query: 163 TASSPELAHESLALLVMFPLTETECMEIASD---ADKITSLSSLLFHSSIEVRVNSAALI 219
             SS  L  E+L++L     +ET    + ++    + + +L+ ++     E R    A  
Sbjct: 178 FDSSRSLMDEALSVLYHLDTSETALKSLLNNKKGTNLVKTLTKIMQRGIYESR----AYA 233

Query: 220 EIVLAGMRSQELRAQISNLD-EIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYK 278
            ++L  +       QI  L+ E+F  VI IL +  S+ +  +  ++ L   C   + R+K
Sbjct: 234 ALLLKKLLEVADPMQIILLERELFGEVIQILHDQISH-KATRSAMQILVITCPWGRNRHK 292

Query: 279 AVAAGAAETLVDRLAD----FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTI 334
           AV  G    +++ L D     ++ ++E A+  +++LC+   G AEF  H   + ++ K I
Sbjct: 293 AVEGGTISMIIELLMDDTFSSERRNSEMAMVVLDMLCQCAEGRAEFLNHGAAIAVVSKKI 352

Query: 335 LKISDRATEYAAGALAAL---CSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLL 391
           L++S   +E A   L ++   C+     Q + +  GV+ +L L++Q  C ++ K KA+ L
Sbjct: 353 LRVSQITSERAVRVLLSVGRFCATPSLLQ-EMLQLGVVAKLCLVLQVSCGNKTKEKAKEL 411

Query: 392 LKLLRDSW 399
           LKL    W
Sbjct: 412 LKLHARVW 419

E3 ubiquitin-protein ligase that negatively regulates water stress response. May control in coordination with PUB23 a drought signaling pathway by ubiquitinating cytosolic RPN12a. Acts as negative regulator of the immunity triggered by the pathogen-associated molecular patterns (PAMPs), in association with PUB23 and PUB24.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5PNY6|PUB21_ARATH U-box domain-containing protein 21 OS=Arabidopsis thaliana GN=PUB21 PE=2 SV=1

 Score =  181 bits (460), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 207/391 (52%), Gaps = 15/391 (3%)

Query: 12  VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNH 71
           + IP  F+CPIS++LM DPV + TG TYDR SIE+W+ +GN TCPVT + LT F  IPNH
Sbjct: 29  ITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTTFDQIPNH 88

Query: 72  TLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSES--NTYGSRLSALRRLR 129
           T+R++IQ WCV   S  +QRIPTP+ P  P  V  +  + SS +    Y      + +++
Sbjct: 89  TIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDYEKCGVIIEKIK 148

Query: 130 GLARDSDKNRSLISSHNVRAILSQVF--FTNINVKTASSPELAHESLALLV-MFPLTETE 186
            L  +S+KNR  ++ ++V  +L   F  F+     T     + +E L+LL  MFP+    
Sbjct: 149 KLGDESEKNRKCVNENSVGWVLCDCFDKFSGDEKLTF----MLNEILSLLTWMFPIGLEG 204

Query: 187 CMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVI 246
             ++AS A     ++ LL  +   VR N+A +++ +L+   ++     + N   + E ++
Sbjct: 205 ISKLAS-ATSFRCVAGLLKSTDDSVRQNAAFIMKEILSLDETRVHSFAVEN--GVAEALV 261

Query: 247 DILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALA 305
            ++++  S        I A++ + L K +   + +  G     V+ + D +    E+ALA
Sbjct: 262 KLIRDSVSSSSTKSSLI-AIYQMVLQKPEIASEFLEIGLVSITVEMIVDAENSVCEKALA 320

Query: 306 TVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ-RDAV 364
            ++ +C    G  E  ++AL +PLLVK I K+S+ AT  +   +  L          DAV
Sbjct: 321 VLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLWKTGNTVAVEDAV 380

Query: 365 SAGVLTQLLLLVQSDCTDRAKRKAQLLLKLL 395
             G   ++LL++Q    +  K KA  LLK++
Sbjct: 381 RLGAFQKVLLVLQVGYGEETKEKATELLKMM 411

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1

 Score =  159 bits (402), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 199/398 (50%), Gaps = 32/398 (8%)

Query: 9   DLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLI 68
           ++ + IP  F+CPIS ELM DPV + +G TYDR +IE W  +G  TCPVT + LT    I
Sbjct: 28  EVEITIPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQI 87

Query: 69  PNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQ--ASSESNTYGSRLSALR 126
           PNHT+RR+IQ WC ++   G++RIPTP+ P     V  +  +  A++    Y + +  + 
Sbjct: 88  PNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACMEMVT 147

Query: 127 RLRGLARDSDKNRSLISSHNVRAILSQVF--FTNINVKTASSPELAHESLALLV-MFPLT 183
           ++  L ++S++NR  +  +    +L   F  F+    + A++  L  E++++L  M P+ 
Sbjct: 148 KMTRLGKESERNRKCVKENGAGLVLCVCFDAFS----ENANASLLLEETVSVLTWMLPIG 203

Query: 184 ETECMEIASDADKITSLSSLLFHSSIEV----RVNSAALI-EIVLAGMRSQELRAQISNL 238
                       K+T+ SS  F+  +E+      N+A LI E++   +       +I+ +
Sbjct: 204 -------LEGQSKLTTTSS--FNRLVELLRNGDQNAAFLIKELLELNVTHVHALTKINGV 254

Query: 239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKC 298
            E F      +K+++     +   I     +   ++T  + +        V+ L D +  
Sbjct: 255 QEAF------MKSINRDSTCVNSLISIHHMILTNQETVSRFLELDLVNITVEMLVDSENS 308

Query: 299 DAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASER 358
             E+AL  + ++C    G  +   + L +P+LVK ILKIS++        +  +C + + 
Sbjct: 309 VCEKALTVLNVICETKEGREKVRRNKLVIPILVKKILKISEKKD--LVSVMWKVCKSGDG 366

Query: 359 CQ-RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLL 395
            +  +A+  G   +L++++Q  C +  K K   LLK++
Sbjct: 367 SEVEEALRLGAFKKLVVMLQVGCGEGTKEKVTELLKMM 404

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  151 bits (381), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 130/405 (32%), Positives = 192/405 (47%), Gaps = 33/405 (8%)

Query: 14  IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTL 73
           IP  FRCPISLELM DPV V +GQTY+R  I+ W+ +G+ TCP T+ PL+  +L PN  L
Sbjct: 228 IPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVL 287

Query: 74  RRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLAR 133
           + LI  WC AN   G++ +P  KQ +           A S    +   +S + RLR   +
Sbjct: 288 KSLISQWCEAN---GIE-LPKNKQNSRDK------KAAKSSDYDHAGLVSLMNRLRSGNQ 337

Query: 134 DSDKNRS----LISSHNV--RAILSQVFFTN--INVKTASSPELAHESLALLVMFPLTET 185
           D  +  +    L++  NV  R  +++       +N+ ++S P     ++  L+   + E 
Sbjct: 338 DEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHEN 397

Query: 186 ECMEIASDADKITSLSSLLFHSSIEVRVNSAA-LIEIVLAGMRSQELRAQISNLDEIFEG 244
               I  D+  I  +  +L   S+E R N+AA L  + +       + A          G
Sbjct: 398 NKASIV-DSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTIGAA---------G 447

Query: 245 VIDILKNL--SSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAER 302
            I  L NL     PRG K    A+F LC+ +  + +AV AG    L++ L D      + 
Sbjct: 448 AIPPLINLLCDGSPRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDE 507

Query: 303 ALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRD 362
           AL+ + +L   P G    A  +  +P LV+ I   S R  E AA  L  LCSA       
Sbjct: 508 ALSLLSILAGNPEGKIVIAR-SEPIPPLVEVIKTGSPRNRENAAAILWLLCSADTEQTLA 566

Query: 363 AVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNS 407
           A +AGV   L  L ++  TDRAKRKA  +L+L+  +      GN 
Sbjct: 567 AKAAGVEDALKELSETG-TDRAKRKASSILELMHQANEDSLKGNG 610

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  150 bits (380), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 130/396 (32%), Positives = 192/396 (48%), Gaps = 41/396 (10%)

Query: 14  IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTL 73
           IP  F CP+SLELM DPV V TGQTY+R  I+ W+  GN TCP T+  L +FTL PN+ L
Sbjct: 241 IPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVL 300

Query: 74  RRLIQDWCVANRSFGVQRIPTP--------KQPAEPSLVRTLLNQASSESNTYGSRLSAL 125
           R LI  WC          I  P        K   + S++R L+ + SS S     R +A+
Sbjct: 301 RSLISRWCAE------HNIEQPAGYINGRTKNSGDMSVIRALVQRLSSRSTE--DRRNAV 352

Query: 126 RRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET 185
             +R L++ S  NR LI+      +L         V   +S ++A +  A+  +  L+  
Sbjct: 353 SEIRSLSKRSTDNRILIAEAGAIPVL---------VNLLTSEDVATQENAITCVLNLSIY 403

Query: 186 E-CMEIASDADKITSLSSLLFHSSIEVRVNSAA-LIEIVLAGMRSQELRAQISNLDEIFE 243
           E   E+   A  +TS+  +L   ++E R N+AA L  + LA     E +  I     I  
Sbjct: 404 ENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLA----DENKIIIGGSGAI-P 458

Query: 244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCD-AER 302
            ++D+L+N    PRG K    ALF LC+    + +AV AG    LV  L+D  +    + 
Sbjct: 459 ALVDLLEN--GTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDE 516

Query: 303 ALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRD 362
           AL  + +L       +   + A T+P L+  +     R  E AA  L +LC   +R    
Sbjct: 517 ALTILSVLANNQDAKSAIVK-ANTLPALIGILQTDQTRNRENAAAILLSLC---KRDTEK 572

Query: 363 AVSAGVLTQL--LLLVQSDCTDRAKRKAQLLLKLLR 396
            ++ G L  +  L+ +  + T+R KRKA  LL+LLR
Sbjct: 573 LITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLR 608

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  148 bits (373), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 134/397 (33%), Positives = 192/397 (48%), Gaps = 37/397 (9%)

Query: 14  IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTL 73
           IP  FRCPISLE+M DPV V +GQTY+R  IE W+  G++TCP T+  LT  TL PN+ L
Sbjct: 256 IPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVL 315

Query: 74  RRLIQDWCVAN--------RSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGS---RL 122
           R LI  WC AN         S   +++ +   PAE + +  L+ + +     YG+   + 
Sbjct: 316 RSLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLA-----YGNPEDQR 370

Query: 123 SALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPE--LAHESLALLVMF 180
           SA   +R LA+ +  NR  I+      +L         V   S+P+  +   S+  L+  
Sbjct: 371 SAAGEIRLLAKRNADNRVAIAEAGAIPLL---------VGLLSTPDSRIQEHSVTALLNL 421

Query: 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE 240
            + E     I S A  I  +  +L   S+E R N+AA +   L+ +   E +  I  L  
Sbjct: 422 SICENNKGAIVS-AGAIPGIVQVLKKGSMEARENAAATL-FSLSVI--DENKVTIGALGA 477

Query: 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDA 300
           I   V+  L N  +  RG K    ALF LC+ +  + KA+ AG   TL   L +      
Sbjct: 478 IPPLVV--LLNEGTQ-RGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMV 534

Query: 301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ 360
           + ALA + +L   P G A     +  VP LV+ I   S R  E AA  L  LCS   +  
Sbjct: 535 DEALAILAILSSHPEGKAIIG-SSDAVPSLVEFIRTGSPRNRENAAAVLVHLCSGDPQHL 593

Query: 361 RDAVSAGVLTQLLLLVQSDCTDRAKRK-AQLLLKLLR 396
            +A   G++  L+ L   + TDR KRK AQLL ++ R
Sbjct: 594 VEAQKLGLMGPLIDLA-GNGTDRGKRKAAQLLERISR 629

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 188/393 (47%), Gaps = 24/393 (6%)

Query: 5   LEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64
           ++ LDL   IP  F CPISLE M DPVT+CTGQTY+R +I  W   G+ TCP T   L D
Sbjct: 56  IKELDLQ-DIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWD 114

Query: 65  FTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGSRLSA 124
            T+ PN TL  LI  W      F  Q+    K+ +E    R +    + +     +R+ A
Sbjct: 115 DTVTPNKTLHHLIYTW------FS-QKYVLMKKRSEDVQGRAIEILGTLKKAKGQARVHA 167

Query: 125 LRRLRGLARDSDKNRSLISSHNVRAILSQVF--FTNINVKTASSPELAHESLALLVMFPL 182
           L  L+ +       R  +      +++S +   FT        S  +  E +A+LV   L
Sbjct: 168 LSELKQIVIAHLMARKTVVEEGGVSVISSLLGPFT--------SHAVGSEVVAILVSLDL 219

Query: 183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIF 242
                  +   A K++ +  +L   S E ++N A LI      +  +  RA++ +   + 
Sbjct: 220 DSDSKSGLMQPA-KVSLIVDMLNDGSNETKINCARLIR---GLVEEKGFRAELVSSHSLL 275

Query: 243 EGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAER 302
            G++ ++K+   +  G+   ++ L  + + KQ R   V+ GA   LVD L   D    E 
Sbjct: 276 VGLMRLVKD-KRHRNGVSPALRLLKPISVHKQVRSLMVSIGAVPQLVDILPSLDPECLEL 334

Query: 303 ALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS-ASERCQR 361
           AL  ++ LC    G     + A T+P  V+ ++++S+  T YA   L ++C  A E C  
Sbjct: 335 ALFVLDALCTDVEGRVAVKDSANTIPYTVRVLMRVSENCTNYALSILWSVCKLAPEECSP 394

Query: 362 DAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL 394
            AV  G+  +LLL++QS C    K+++  LLKL
Sbjct: 395 LAVEVGLAAKLLLVIQSGCDAALKQRSAELLKL 427

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
224103617	413	predicted protein [Populus trichocarpa]	0.988	1.0	0.808	0.0
224122774	413	predicted protein [Populus trichocarpa]	0.988	1.0	0.813	0.0
147766739	476	hypothetical protein VITISV_026443 [Viti	0.992	0.871	0.770	0.0
225428843	415	PREDICTED: U-box domain-containing prote	0.992	1.0	0.770	0.0
356499749	415	PREDICTED: U-box domain-containing prote	0.985	0.992	0.764	1e-176
449445886	425	PREDICTED: U-box domain-containing prote	1.0	0.983	0.735	1e-175
356521518	414	PREDICTED: U-box domain-containing prote	0.985	0.995	0.764	1e-173
255555417	420	Spotted leaf protein, putative [Ricinus	0.892	0.888	0.778	1e-172
357475309	451	U-box domain-containing protein [Medicag	0.980	0.909	0.745	1e-166
297852670	421	U-box domain-containing protein [Arabido	0.997	0.990	0.691	1e-157

>gi|224103617|ref|XP_002313124.1| predicted protein [Populus trichocarpa] gi|118483121|gb|ABK93469.1| unknown [Populus trichocarpa] gi|222849532|gb|EEE87079.1| predicted protein [Populus trichocarpa]

 Score =  691 bits (1782), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 338/418 (80%), Positives = 377/418 (90%), Gaps = 5/418 (1%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60
           MPGSLEPLDL+VQIPYHFRCPISLELMCDPVTV TGQTYDR SIESWVATGNTTCPVTR+
Sbjct: 1   MPGSLEPLDLTVQIPYHFRCPISLELMCDPVTVSTGQTYDRSSIESWVATGNTTCPVTRA 60

Query: 61  PLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGS 120
           PLTDFTLIPNHTLRRLIQDWCVANR+FGV+RIPTPKQPAEPSLVR+LLNQA+S SN   S
Sbjct: 61  PLTDFTLIPNHTLRRLIQDWCVANRAFGVERIPTPKQPAEPSLVRSLLNQAASASNPTHS 120

Query: 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180
           RLSALRRLRGLARDSDKNRS+ISSHNVR +L  + F+     T+ S +L+HESLA+LV+F
Sbjct: 121 RLSALRRLRGLARDSDKNRSVISSHNVREVLVNLVFS-----TSQSSDLSHESLAILVLF 175

Query: 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE 240
           PLTE +C+ I+S+ ++I+ L++LLFHSSIEVRVNSAALIE V+AG RS +LR QISN + 
Sbjct: 176 PLTEFDCVGISSEPERISYLANLLFHSSIEVRVNSAALIENVIAGTRSSDLRLQISNTEI 235

Query: 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDA 300
           IFEGVI+ILKN  S PR LK+GIKALFALCLVKQTR+KAV AGAAETL+DRLADFDKCDA
Sbjct: 236 IFEGVIEILKNPLSSPRALKIGIKALFALCLVKQTRHKAVTAGAAETLIDRLADFDKCDA 295

Query: 301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ 360
           ERALAT+ELLCRI  GCA FA HALTVPLLVKTILKISDRATEYAAGAL ALCSASE  Q
Sbjct: 296 ERALATIELLCRIQVGCAAFAAHALTVPLLVKTILKISDRATEYAAGALLALCSASELSQ 355

Query: 361 RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSEVVPF 418
           ++AV AG+LTQLLLLVQSDCTDRAKRKAQ+LLKLLRD+WP+DS+GNSDDF CSEVVPF
Sbjct: 356 KEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDAWPEDSVGNSDDFLCSEVVPF 413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122774|ref|XP_002330475.1| predicted protein [Populus trichocarpa] gi|224123380|ref|XP_002330301.1| predicted protein [Populus trichocarpa] gi|222871336|gb|EEF08467.1| predicted protein [Populus trichocarpa] gi|222871887|gb|EEF09018.1| predicted protein [Populus trichocarpa]

 Score =  688 bits (1776), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 340/418 (81%), Positives = 375/418 (89%), Gaps = 5/418 (1%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60
           MP SLEPLDL+VQIPYHFRCPISLELMCDPVTV TGQTYDR SIESWVATGNTTCPVTR+
Sbjct: 1   MPRSLEPLDLTVQIPYHFRCPISLELMCDPVTVNTGQTYDRSSIESWVATGNTTCPVTRA 60

Query: 61  PLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGS 120
            LTDFTLIPNHTLRRLIQDWCVANR+FGV+RIPTPKQPAEPSLVR+LL+QA+SESN   S
Sbjct: 61  LLTDFTLIPNHTLRRLIQDWCVANRAFGVERIPTPKQPAEPSLVRSLLSQAASESNPTHS 120

Query: 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180
           RLSALRRLRGLARDSDKNRSLISSHNVR IL  + F+     ++ S EL+HESLA+LVMF
Sbjct: 121 RLSALRRLRGLARDSDKNRSLISSHNVREILVNLVFS-----SSQSLELSHESLAILVMF 175

Query: 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE 240
           PLTE +C+ IASD ++I+ L++LLFHSSIEVRVNSAALIE V+AG RS +LR QISN++ 
Sbjct: 176 PLTEFDCVAIASDPERISCLANLLFHSSIEVRVNSAALIENVIAGTRSSDLRLQISNMEI 235

Query: 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDA 300
           IFEGVIDILKN  S PR LK+GIK LFALCLVKQTR+KAV+AGAAETL+DRLAD DKCDA
Sbjct: 236 IFEGVIDILKNPLSSPRALKIGIKGLFALCLVKQTRHKAVSAGAAETLIDRLADLDKCDA 295

Query: 301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ 360
           ERALAT+ELLCRI  GCA F  HALTVPLLVKTILKISDRATEYAAGAL ALCSASE+ Q
Sbjct: 296 ERALATIELLCRIQVGCAAFVAHALTVPLLVKTILKISDRATEYAAGALLALCSASEQSQ 355

Query: 361 RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSEVVPF 418
           ++AV AG+LTQLLLLVQSDCTDRAKRKAQ+LLKLLRDSWP+DS GNSDDF CSEVVPF
Sbjct: 356 KEAVCAGILTQLLLLVQSDCTDRAKRKAQMLLKLLRDSWPEDSAGNSDDFVCSEVVPF 413

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147766739|emb|CAN74163.1| hypothetical protein VITISV_026443 [Vitis vinifera]

 Score =  642 bits (1655), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/418 (77%), Positives = 364/418 (87%), Gaps = 3/418 (0%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60
           MPGSLEPLD+ VQIPYHFRCPISLELMCDPVTV TGQTYDR SIE WV TGNTTCPVTRS
Sbjct: 62  MPGSLEPLDVGVQIPYHFRCPISLELMCDPVTVSTGQTYDRASIEYWVGTGNTTCPVTRS 121

Query: 61  PLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGS 120
            LTDFTLIPNHTLRRLIQDWCVANRSFGV+RIPTPKQPA+P+ VR+L  Q SS+SN   +
Sbjct: 122 SLTDFTLIPNHTLRRLIQDWCVANRSFGVERIPTPKQPADPASVRSLQTQVSSQSNPSHT 181

Query: 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180
           RLSA++RLRGLARDSDKNRS+I SHNV+ +L  V F++    +A   EL HESLALLVMF
Sbjct: 182 RLSAVKRLRGLARDSDKNRSIIGSHNVQEVLLPVIFSDSECDSA---ELKHESLALLVMF 238

Query: 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE 240
           PL+E+EC  +AS  D++  L SLLFH+SIEVRVNSAALIEIV+AG RS +LRAQISN+DE
Sbjct: 239 PLSESECAFVASQPDRVAHLVSLLFHASIEVRVNSAALIEIVVAGTRSLDLRAQISNVDE 298

Query: 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDA 300
           IFEG+  IL    +YPR LKVGIKALFALCL KQ+R+KAVAAGA   L+DRLADF+KCD 
Sbjct: 299 IFEGITGILNYPLAYPRALKVGIKALFALCLAKQSRHKAVAAGAVTALIDRLADFEKCDV 358

Query: 301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ 360
           ERALATVELLCR+PAGCA FA HALTVPLLV+ ILK+SDRATEYAAGAL +LCSA+E+ Q
Sbjct: 359 ERALATVELLCRVPAGCAAFAAHALTVPLLVRKILKVSDRATEYAAGALLSLCSAAEQSQ 418

Query: 361 RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSEVVPF 418
           R+AVSAGV+TQLLLLVQSDCT+RAKRKAQLLLKLLRDSWP+DS+ NSDDF CS+VVPF
Sbjct: 419 REAVSAGVVTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPEDSVVNSDDFGCSDVVPF 476

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225428843|ref|XP_002285110.1| PREDICTED: U-box domain-containing protein 26 [Vitis vinifera]

 Score =  641 bits (1654), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 322/418 (77%), Positives = 364/418 (87%), Gaps = 3/418 (0%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60
           MPGSLEPLD+ VQIPYHFRCPISLELMCDPVTV TGQTYDR SIE WV TGNTTCPVTRS
Sbjct: 1   MPGSLEPLDVGVQIPYHFRCPISLELMCDPVTVSTGQTYDRASIEYWVGTGNTTCPVTRS 60

Query: 61  PLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGS 120
            LTDFTLIPNHTLRRLIQDWCVANRSFGV+RIPTPKQPA+P+ VR+L  Q SS+SN   +
Sbjct: 61  SLTDFTLIPNHTLRRLIQDWCVANRSFGVERIPTPKQPADPASVRSLQTQVSSQSNPSHT 120

Query: 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180
           RLSA++RLRGLARDSDKNRS+I SHNV+ +L  V F++    +A   EL HESLALLVMF
Sbjct: 121 RLSAVKRLRGLARDSDKNRSIIGSHNVQEVLLPVIFSDSECDSA---ELKHESLALLVMF 177

Query: 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE 240
           PL+E+EC  +AS  D++  L SLLFH+SIEVRVNSAALIEIV+AG RS +LRAQISN+DE
Sbjct: 178 PLSESECAFVASQPDRVAHLVSLLFHASIEVRVNSAALIEIVVAGTRSLDLRAQISNVDE 237

Query: 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDA 300
           IFEG+  IL    +YPR LKVGIKALFALCL KQ+R+KAVAAGA   L+DRLADF+KCD 
Sbjct: 238 IFEGITGILNYPLAYPRALKVGIKALFALCLAKQSRHKAVAAGAVTALIDRLADFEKCDV 297

Query: 301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ 360
           ERALATVELLCR+PAGCA FA HALTVPLLV+ ILK+SDRATEYAAGAL +LCSA+E+ Q
Sbjct: 298 ERALATVELLCRVPAGCAAFAAHALTVPLLVRKILKVSDRATEYAAGALLSLCSAAEQSQ 357

Query: 361 RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSEVVPF 418
           R+AVSAGV+TQLLLLVQSDCT+RAKRKAQLLLKLLRDSWP+DS+ NSDDF CS+VVPF
Sbjct: 358 REAVSAGVVTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPEDSVVNSDDFGCSDVVPF 415

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499749|ref|XP_003518699.1| PREDICTED: U-box domain-containing protein 25-like [Glycine max]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 322/421 (76%), Positives = 364/421 (86%), Gaps = 9/421 (2%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60
           MPGSLEPLDL V IPYHFRCPISLELM DPVTVCTGQTYDR SIE+WV+TGN+TCPVTR+
Sbjct: 1   MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRASIEAWVSTGNSTCPVTRA 60

Query: 61  PLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGS 120
            LTDFTLIPNHTLRRLIQ+WCVANR+FGV+RIPTPKQPA+P+LVR+LLNQASS S     
Sbjct: 61  TLTDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQASSGSAPAHL 120

Query: 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180
           RLS++RRLR LARDSDKNRSLI+SHNVR IL  + F N       S EL +ESLALLVMF
Sbjct: 121 RLSSIRRLRQLARDSDKNRSLIASHNVRQILLPIVFNN------GSDELKNESLALLVMF 174

Query: 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE 240
           PL E+EC  +ASD+ KI  LS +L H+S +VRVNSAALIEIV+AG  S ELRA++S++DE
Sbjct: 175 PLGESECASLASDSVKIGYLSRMLTHNSFDVRVNSAALIEIVVAGTHSPELRAEVSSVDE 234

Query: 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDA 300
           I++GV+D+L++  S+PR LK+GIKALFALCLVK TR KAV AG    LVDRLADF+KCDA
Sbjct: 235 IYDGVVDLLRSPISHPRALKIGIKALFALCLVKNTRQKAVDAGTPAVLVDRLADFEKCDA 294

Query: 301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ 360
           ERALATVELLCRIPAGC  FA HALTVP+LVK ILKISDRATEYAAGAL +LCS SERCQ
Sbjct: 295 ERALATVELLCRIPAGCEAFAGHALTVPMLVKIILKISDRATEYAAGALLSLCSESERCQ 354

Query: 361 RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIG-NSDDFACSE--VVP 417
           R+AV+AGVLTQLLLLVQSDCT+RAKRKAQ+LLKLLRDSWPQDSIG NSDDFACS+  VVP
Sbjct: 355 REAVAAGVLTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPQDSIGNNSDDFACSQVVVVP 414

Query: 418 F 418
           F
Sbjct: 415 F 415

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445886|ref|XP_004140703.1| PREDICTED: U-box domain-containing protein 26-like [Cucumis sativus] gi|449528700|ref|XP_004171341.1| PREDICTED: U-box domain-containing protein 26-like [Cucumis sativus]

 Score =  621 bits (1602), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 312/424 (73%), Positives = 365/424 (86%), Gaps = 6/424 (1%)

Query: 1   MPGS----LEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCP 56
           MPG+    ++PLDLS+ IPYHFRCPISLELM DPVTV TGQTYDR SIESWVATGNTTCP
Sbjct: 1   MPGTGSVAVQPLDLSLHIPYHFRCPISLELMRDPVTVSTGQTYDRSSIESWVATGNTTCP 60

Query: 57  VTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESN 116
           VTR+PLTDFTLIPNHTLRRLIQ+WCVANRS+GV+RIPTPKQPAEPSLVR+LL QASS S+
Sbjct: 61  VTRAPLTDFTLIPNHTLRRLIQEWCVANRSYGVERIPTPKQPAEPSLVRSLLAQASSRSS 120

Query: 117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTAS-SPELAHESLA 175
               R+SALRRL+GLARDSDKNRSLISS N R IL  V F+N++  + S SP+L+ ESLA
Sbjct: 121 GSSLRISALRRLKGLARDSDKNRSLISSLNAREILLDVVFSNLDSGSDSFSPDLSRESLA 180

Query: 176 LLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQI 235
           LLVM PLTE+EC+ +ASD  +I  LS LLF SSIE R+N+AALIE V+AG R+ ELR QI
Sbjct: 181 LLVMLPLTESECVLVASDPQRIGYLSHLLFDSSIEDRINAAALIETVIAGTRASELRTQI 240

Query: 236 SNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF 295
             +DE+FEGV++IL++ ++YPR LKVG+KALFALCLVKQTR+KAV+AGAAE ++DR  D 
Sbjct: 241 CGIDELFEGVVEILRDPTAYPRALKVGVKALFALCLVKQTRHKAVSAGAAEIIIDRFPDL 300

Query: 296 DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSA 355
           +K DAERALAT+EL+CRIP GC  FA HALTVPLLVK ILKISDRATE A GAL +LCSA
Sbjct: 301 EKYDAERALATIELICRIPTGCDAFAAHALTVPLLVKVILKISDRATESAVGALVSLCSA 360

Query: 356 SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSE- 414
           SE  +R+AV+AG+LTQLLLLVQSDCT+R KRK+Q+LLKLLRDSWPQ+S+GNSDD+ACSE 
Sbjct: 361 SEENRREAVAAGILTQLLLLVQSDCTERVKRKSQVLLKLLRDSWPQESVGNSDDYACSEI 420

Query: 415 VVPF 418
           VVPF
Sbjct: 421 VVPF 424

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521518|ref|XP_003529402.1| PREDICTED: U-box domain-containing protein 26-like [Glycine max]

 Score =  615 bits (1585), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 321/420 (76%), Positives = 367/420 (87%), Gaps = 8/420 (1%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60
           MPGSLEPLDL V IPYHFRCPISLELM DPVTVCTGQTYDR SIESWV+TGNTTCPVTR+
Sbjct: 1   MPGSLEPLDLGVHIPYHFRCPISLELMRDPVTVCTGQTYDRASIESWVSTGNTTCPVTRA 60

Query: 61  PLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGS 120
            L+DFTLIPNHTLRRLIQ+WCVANR+FGV+RIPTPKQPA+P+LVR+LLNQASS+S     
Sbjct: 61  TLSDFTLIPNHTLRRLIQEWCVANRAFGVERIPTPKQPADPALVRSLLNQASSDSAPAHL 120

Query: 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180
           RLS+LRRLR LARDSDKNRSLI+SHN+  IL  + F N       S EL+HESLALLVMF
Sbjct: 121 RLSSLRRLRQLARDSDKNRSLIASHNLLQILLPIVFNN------GSDELSHESLALLVMF 174

Query: 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE 240
           PL E+EC  +ASD+ KI  LS +L H+S +VRVNSAAL+EIV+ G  S ELRA++S++DE
Sbjct: 175 PLGESECASLASDSMKIGYLSRMLAHNSFDVRVNSAALVEIVVVGTHSPELRAEVSSVDE 234

Query: 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDA 300
           I++GV+D+L++  S+PR LK+GIKALFALCLVK TR KAVAAGA   LVDRLADF+KCDA
Sbjct: 235 IYDGVVDLLRSPISHPRALKIGIKALFALCLVKNTRQKAVAAGAPAVLVDRLADFEKCDA 294

Query: 301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ 360
           ERALATVELLCRIPAGCA FA HALTVP+LVK ILKIS+RATEYAAGAL +LCS SERCQ
Sbjct: 295 ERALATVELLCRIPAGCAAFAAHALTVPMLVKIILKISNRATEYAAGALLSLCSESERCQ 354

Query: 361 RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSE--VVPF 418
           R+AV+AGVLTQLLLL+QSDCT+RAKRKAQ+LLKLLRDSWPQDS+GNSDDFACS+  VVPF
Sbjct: 355 REAVAAGVLTQLLLLMQSDCTERAKRKAQMLLKLLRDSWPQDSVGNSDDFACSQVVVVPF 414

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255555417|ref|XP_002518745.1| Spotted leaf protein, putative [Ricinus communis] gi|223542126|gb|EEF43670.1| Spotted leaf protein, putative [Ricinus communis]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 296/380 (77%), Positives = 339/380 (89%), Gaps = 7/380 (1%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60
           MPGSLE LDLSVQIPYHFRCPISLELM DPVTV TGQTYDR SIESWVATGN+TCPVTR 
Sbjct: 1   MPGSLESLDLSVQIPYHFRCPISLELMRDPVTVSTGQTYDRASIESWVATGNSTCPVTRL 60

Query: 61  PLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGS 120
           PLTDFTLIPNHTLRRLIQDWCVANRSFG++RIPTPKQPAEPSLVR+LLNQ +S +NT  S
Sbjct: 61  PLTDFTLIPNHTLRRLIQDWCVANRSFGIERIPTPKQPAEPSLVRSLLNQVTSVTNTAHS 120

Query: 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180
           RLSA+RRL+ LARDSDKNRSLISSHN   +L  + F+N      +S +L HE+++L+VMF
Sbjct: 121 RLSAIRRLKSLARDSDKNRSLISSHNATNLLVNLLFSN------TSSDLTHEAMSLVVMF 174

Query: 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE 240
           PLTE+EC+ IAS+ ++I  L++LLFHSSIE+RVNSAALIE V+AG +S +LRAQ SN+DE
Sbjct: 175 PLTESECISIASNTERIIFLANLLFHSSIEIRVNSAALIETVIAGTKSSDLRAQFSNVDE 234

Query: 241 IFEGVIDILKN-LSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCD 299
           I EGVI++LK  +S+YPR LK+GIKALFALCLVKQTR+KAV+AGA ETL+DRLADFDKCD
Sbjct: 235 IVEGVIELLKRPISNYPRALKIGIKALFALCLVKQTRHKAVSAGAVETLIDRLADFDKCD 294

Query: 300 AERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERC 359
           AERALAT+ELLCR+P G AEFAEHALTVPLLVKTILKISDRATEYAAGAL ALC+ASE+ 
Sbjct: 295 AERALATIELLCRVPEGVAEFAEHALTVPLLVKTILKISDRATEYAAGALLALCTASEKS 354

Query: 360 QRDAVSAGVLTQLLLLVQSD 379
           QR+AVSAG+LTQLLLLVQSD
Sbjct: 355 QREAVSAGILTQLLLLVQSD 374

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357475309|ref|XP_003607940.1| U-box domain-containing protein [Medicago truncatula] gi|355508995|gb|AES90137.1| U-box domain-containing protein [Medicago truncatula]

 Score =  589 bits (1518), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 313/420 (74%), Positives = 355/420 (84%), Gaps = 10/420 (2%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60
           M G LEPLDL VQIPYHFRCPISLELM DPVTV TGQTYDR SIESWV TGNTTCPVTR+
Sbjct: 1   MRGCLEPLDLGVQIPYHFRCPISLELMRDPVTVSTGQTYDRNSIESWVNTGNTTCPVTRT 60

Query: 61  PLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGS 120
            LTDFT IPNHTLRRLIQDWCV+NR+FGVQRIPTPKQPA+ +LVR+LLNQ SS S     
Sbjct: 61  NLTDFTFIPNHTLRRLIQDWCVSNRAFGVQRIPTPKQPADAALVRSLLNQISSHSAPTQL 120

Query: 121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF 180
           RL++LRRLR L RDS+ NRSLISS NVR I+  + F N         EL +ESLAL+V+F
Sbjct: 121 RLNSLRRLRSLTRDSEYNRSLISSLNVRNIILPILFNN------GLDELKNESLALIVLF 174

Query: 181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE 240
           PL+E+EC  +ASD+DKI  L+SLL H S +VRVNSAALIEI++AG  S E+R Q+SN+D 
Sbjct: 175 PLSESECTSLASDSDKINYLTSLLSHDSFDVRVNSAALIEIIVAGTHSPEIRLQVSNVDG 234

Query: 241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDA 300
           I++GV++ILKN  SYPR LK+GIKALFALCLVKQTR++AV+AGA   L+DRLADF+KCDA
Sbjct: 235 IYDGVVEILKNPISYPRALKIGIKALFALCLVKQTRHRAVSAGAPVVLIDRLADFEKCDA 294

Query: 301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ 360
           ERALATVELLCR+PAGCA FA HALTVP+LVK ILKISDRATEYAAGAL ALCS SERCQ
Sbjct: 295 ERALATVELLCRVPAGCASFAGHALTVPMLVKIILKISDRATEYAAGALMALCSESERCQ 354

Query: 361 RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDD----FACSEVV 416
           R+AV+AGVLTQLLLLVQSDCT+RAKRKAQLLLKLLRDSWPQDS+GNSDD    FAC  +V
Sbjct: 355 REAVAAGVLTQLLLLVQSDCTERAKRKAQLLLKLLRDSWPQDSVGNSDDFGIWFACENLV 414

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297852670|ref|XP_002894216.1| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297340058|gb|EFH70475.1| U-box domain-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  561 bits (1446), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 292/422 (69%), Positives = 349/422 (82%), Gaps = 5/422 (1%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60
           MPG+LEPLDL +QIPYHFRCPISL+LM DPVT+ TGQTYDR SI+SW+A GNTTCPVTR 
Sbjct: 1   MPGNLEPLDLGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRV 60

Query: 61  PLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTY-- 118
            L+DFTLIPNHTLRRLIQ+WCVANRS GV+RIPTPKQPA+P  VR+LL+QAS+ + T+  
Sbjct: 61  ALSDFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAVTGTHVS 120

Query: 119 -GSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALL 177
             SR +A+RRLRGLARDS+KNR LI+ HN R IL ++ F ++   T+SS EL  ESLALL
Sbjct: 121 VRSRAAAIRRLRGLARDSEKNRVLIAGHNAREILVRILFADVET-TSSSSELVSESLALL 179

Query: 178 VMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN 237
           V+  +TETEC  IASD  ++  ++ LLF SSIE+RVN+AALIE+VL G +S +L+  IS 
Sbjct: 180 VLLHMTETECEAIASDPGRVGFMTRLLFDSSIEIRVNAAALIEMVLTGSKSMDLKLIISG 239

Query: 238 LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA-DFD 296
            D IFEGV+D+LKN  S  R LK+GIKA+FALCLVKQTR+ A++AGA   L+DRLA DFD
Sbjct: 240 SDSIFEGVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFD 299

Query: 297 KCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS 356
           +CD ER LATVELLCR+P GCA F EHALTVPL+VKTIL++SDRATEYAAGAL ALC+A 
Sbjct: 300 RCDTERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALCTAE 359

Query: 357 ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSDDFACSEVV 416
           ERC+ +A +AG++TQLLLLVQSDCT+RAKRKAQ+LLKLLRDSWP DS  NSDDF  SEV 
Sbjct: 360 ERCRDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDDSTVNSDDFNRSEVA 419

Query: 417 PF 418
           PF
Sbjct: 420 PF 421

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	418
TAIR|locus:2012136	421	PUB26 "plant U-box 26" [Arabid	0.997	0.990	0.609	3.4e-132
TAIR|locus:2090604	421	PUB25 "plant U-box 25" [Arabid	0.988	0.980	0.603	2e-127
TAIR|locus:2039265	411	PUB23 "plant U-box 23" [Arabid	0.866	0.880	0.317	1.9e-42
TAIR|locus:2169861	435	AT5G37490 [Arabidopsis thalian	0.868	0.834	0.316	3.2e-42
TAIR|locus:2013850	431	CMPG1 ""CYS, MET, PRO, and GLY	0.851	0.825	0.272	1.2e-33
TAIR|locus:2097390	448	AT3G49810 [Arabidopsis thalian	0.179	0.167	0.539	8.6e-29
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.715	0.488	0.315	1.8e-28
TAIR|locus:2079964	435	PUB22 "plant U-box 22" [Arabid	0.456	0.439	0.356	3.1e-28
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.741	0.507	0.3	9.8e-27
TAIR|locus:2075140	660	PUB13 "plant U-box 13" [Arabid	0.755	0.478	0.322	1.6e-26

TAIR|locus:2012136 PUB26 "plant U-box 26" [Arabidopsis thaliana (taxid:3702)]

 Score = 1296 (461.3 bits), Expect = 3.4e-132, P = 3.4e-132
 Identities = 257/422 (60%), Positives = 311/422 (73%)

Query:     1 MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60
             MPG+LEPLDL +QIPYHFRCPISL+LM DPVT+ TGQTYDR SI+SW+A GNTTCPVTR 
Sbjct:     1 MPGNLEPLDLGIQIPYHFRCPISLDLMSDPVTISTGQTYDRTSIDSWIAMGNTTCPVTRV 60

Query:    61 PLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYXX 120
              L+DFTLIPNHTLRRLIQ+WCVANRS GV+RIPTPKQPA+P  VR+LL+QAS+ + T+  
Sbjct:    61 ALSDFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPISVRSLLSQASAITGTHVS 120

Query:   121 XXXXXXXXXXX---XXDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALL 177
                             DS+KNR LI+ HN R IL ++ F +I   + SS EL  ESLALL
Sbjct:   121 VRSRAAAIRRLRGLARDSEKNRVLIAGHNAREILVRILFADIETTSLSS-ELVSESLALL 179

Query:   178 VMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN 237
             V+  +TETEC  +ASD  ++  ++ LLF SSIE+RVN+AALIE+VL G +S +L+  IS 
Sbjct:   180 VLLHMTETECEAVASDPSRVGFMTRLLFDSSIEIRVNAAALIEMVLTGAKSMDLKLIISG 239

Query:   238 LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA-DFD 296
              D IFEGV+D+LKN  S  R LK+GIKA+FALCLVKQTR+ A++AGA   L+DRLA DFD
Sbjct:   240 SDSIFEGVLDLLKNPISSRRALKIGIKAIFALCLVKQTRHLAISAGAPGILIDRLAADFD 299

Query:   297 KCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYXXXXXXXXXXXX 356
             +CD ER LATVELLCR+P GCA F EHALTVPL+VKTIL++SDRATEY            
Sbjct:   300 RCDTERGLATVELLCRLPEGCAAFGEHALTVPLMVKTILRVSDRATEYAAGALLALCTAE 359

Query:   357 ERCQRDAVSAGVLTQLLLLVQSDCTDXXXXXXXXXXXXXXDSWPQDSIGNSDDFACSEVV 416
             ERC+ +A +AG++TQLLLLVQSDCT+              DSWP DS  +SDDF  SEV 
Sbjct:   360 ERCRDEAAAAGLVTQLLLLVQSDCTERAKRKAQMLLKLLRDSWPDDSTVHSDDFNRSEVA 419

Query:   417 PF 418
             PF
Sbjct:   420 PF 421

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2090604 PUB25 "plant U-box 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 1251 (445.4 bits), Expect = 2.0e-127, P = 2.0e-127
 Identities = 257/426 (60%), Positives = 308/426 (72%)

Query:     1 MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGN-TTCPVTR 59
             MP ++EPLDL +QIPYHFRCPISLELM DPVTVCTGQTYDR SIESWV+ GN TTCPVTR
Sbjct:     1 MPRNIEPLDLGIQIPYHFRCPISLELMQDPVTVCTGQTYDRASIESWVSIGNNTTCPVTR 60

Query:    60 SPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYX 119
             +PL+DFTLIPNHTLRRLIQ+WCVANRS GV+RIPTPKQPA+P+ VR LL+QAS+ + T+ 
Sbjct:    61 APLSDFTLIPNHTLRRLIQEWCVANRSNGVERIPTPKQPADPTSVRALLSQASAITGTHV 120

Query:   120 XXXXXXXXXXXX---XXDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLAL 176
                              DSDKNR LI++HN   IL ++ F+    +T SS EL  ESLAL
Sbjct:   121 SVRSRAAALRRLRGFARDSDKNRVLIAAHNATEILIKILFS----ETTSS-ELVSESLAL 175

Query:   177 LVMFPLTE-TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQI 235
             LVM P+TE  + + I+SD  ++  L+ LLF SSIE RVN+AALIEIV  G +S +L+  I
Sbjct:   176 LVMLPITEPNQFVSISSDPGRVEFLTRLLFDSSIETRVNAAALIEIVSTGTKSADLKGSI 235

Query:   236 SNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA-D 294
             SN + +FEGV+D+L+N  S  R LK+GIK LFALC VK TR+ A+ AGA E L+DRLA D
Sbjct:   236 SNSESVFEGVLDLLRNPISSRRALKIGIKTLFALCSVKSTRHIAITAGAPEILIDRLAAD 295

Query:   295 FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYXXXXXXXXXX 354
             FD+CD ERALATVELLCR P GCA F EHALTVPLLVKTIL++SDRATEY          
Sbjct:   296 FDRCDTERALATVELLCRTPEGCAAFGEHALTVPLLVKTILRVSDRATEYAAGALLALCT 355

Query:   355 XXERCQRDAVSAGVLTQLLLLVQSDCTDXXXXXXXXXXXXXXDSWPQ-DSIGNSDDFACS 413
               ER + +A  AGV+ QLLL+VQS+CT+              DSWP  +S  NSDDF CS
Sbjct:   356 AEERWREEAAGAGVVVQLLLMVQSECTERAKKKAQKLLKLLRDSWPDYNSFANSDDFGCS 415

Query:   414 -EVVPF 418
              +VVPF
Sbjct:   416 SQVVPF 421

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2039265 PUB23 "plant U-box 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 449 (163.1 bits), Expect = 1.9e-42, P = 1.9e-42
 Identities = 125/394 (31%), Positives = 192/394 (48%)

Query:     1 MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGN-TTCPVTR 59
             M G +  +D  ++IP  F CPISLE+M DPV V TG TYDR SIE W+  G   +CPVT+
Sbjct:     1 MSGGI--MDEEIEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTK 58

Query:    60 SPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLL-NQASSESNTY 118
               +TD  L PNHTLRRLIQ WC  N S+GV+RIPTP+ P   S +  L+ + ASS  N  
Sbjct:    59 QDITDADLTPNHTLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRDSASSHENQV 118

Query:   119 XXXXXXXXXXXXXXXDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV 178
                            ++  N+  + +  V       F  NI    + +  L  E+L LL 
Sbjct:   119 KCLKRLRQIVS----ENATNKRCLEAAGVPE-----FLANIVSNDSENGSLTDEALNLLY 169

Query:   179 MFPLTETECMEIAS---DADKITSLSSLLFHSSIEVRVNSAALIEIVLA---GMRSQELR 232
                 +ET    + +   D + + SL+ ++     E RV +  L++ +L     M+S  L+
Sbjct:   170 HLETSETVLKNLLNNKKDNNIVKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLK 229

Query:   233 AQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRL 292
                    E+F  V+ IL +  S  +  K  +  L  +C   + R+KAV AG    +++ L
Sbjct:   230 P------EVFTEVVQILDDRISQ-KATKAAMHILVNICPWGRNRHKAVEAGVISVIIELL 282

Query:   293 AD--F--DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYXXXX 348
              D  F  ++   E A+  ++LLC+   G AEF  H   + ++ K IL++S  A++     
Sbjct:   283 MDESFTSERRGPEMAMVVLDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRV 342

Query:   349 XXXXXX--XXERCQRDAVSAGVLTQLLLLVQSDC 380
                            + +  GV+ +L L++Q  C
Sbjct:   343 LLSVGRFCATPALLHEMLQLGVVAKLCLVLQVSC 376

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2169861 AT5G37490 [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 120/379 (31%), Positives = 194/379 (51%)

Query:     6 EPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF 65
             EP +  + IP  F+CPIS++LM DPV + TG TYDR SIE+W+ +GN TCPVT + LT F
Sbjct:    24 EP-ESEITIPPEFQCPISIDLMKDPVIISTGITYDRVSIETWINSGNKTCPVTNTVLTTF 82

Query:    66 TLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNT--YXXXXX 123
               IPNHT+R++IQ WCV   S  +QRIPTP+ P  P  V  +  + SS +    Y     
Sbjct:    83 DQIPNHTIRKMIQGWCVEKGSPLIQRIPTPRVPLMPCEVYEISRKLSSATRRGDYEKCGV 142

Query:   124 XXXXXXXXXXDSDKNRSLISSHNVRAILSQVF--FTNINVKTASSPELAHESLALLV-MF 180
                       +S+KNR  ++ ++V  +L   F  F+     T     + +E L+LL  MF
Sbjct:   143 IIEKIKKLGDESEKNRKCVNENSVGWVLCDCFDKFSGDEKLTF----MLNEILSLLTWMF 198

Query:   181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE 240
             P+      ++AS A     ++ LL  +   VR N+A +++ +L+   ++     + N   
Sbjct:   199 PIGLEGISKLAS-ATSFRCVAGLLKSTDDSVRQNAAFIMKEILSLDETRVHSFAVEN--G 255

Query:   241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCD 299
             + E ++ ++++  S     K  + A++ + L K +   + +  G     V+ + D +   
Sbjct:   256 VAEALVKLIRDSVS-SSSTKSSLIAIYQMVLQKPEIASEFLEIGLVSITVEMIVDAENSV 314

Query:   300 AERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYXXXXXXXXXXXXERC 359
              E+ALA ++ +C    G  E  ++AL +PLLVK I K+S+ AT                 
Sbjct:   315 CEKALAVLDAICETEHGREEVRKNALVMPLLVKKIAKVSELATRSSMSMILKLWKTGNTV 374

Query:   360 Q-RDAVSAGVLTQLLLLVQ 377
                DAV  G   ++LL++Q
Sbjct:   375 AVEDAVRLGAFQKVLLVLQ 393

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2013850 CMPG1 ""CYS, MET, PRO, and GLY protein 1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 366 (133.9 bits), Expect = 1.2e-33, P = 1.2e-33
 Identities = 103/378 (27%), Positives = 183/378 (48%)

Query:     9 DLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLI 68
             ++ + IP  F+CPIS ELM DPV + +G TYDR +IE W  +G  TCPVT + LT    I
Sbjct:    28 EVEITIPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQI 87

Query:    69 PNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQ--ASSESNTYXXXXXXXX 126
             PNHT+RR+IQ WC ++   G++RIPTP+ P     V  +  +  A++    Y        
Sbjct:    88 PNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACMEMVT 147

Query:   127 XXXXXXXDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV-MFPLTET 185
                    +S++NR  +  +    +L  V F   + + A++  L  E++++L  M P+   
Sbjct:   148 KMTRLGKESERNRKCVKENGAGLVLC-VCFDAFS-ENANASLLLEETVSVLTWMLPIG-- 203

Query:   186 ECMEIASDADKITSLSSLLFHSSIEVRVN---SAALIEIVLAGMRSQELRAQISNLDEIF 242
               +E  S   K+T+ SS  F+  +E+  N   +AA +   L  +    + A ++ ++ + 
Sbjct:   204 --LEGQS---KLTTTSS--FNRLVELLRNGDQNAAFLIKELLELNVTHVHA-LTKINGVQ 255

Query:   243 EGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAER 302
             E  +  +   S+    L + I  +  +   ++T  + +        V+ L D +    E+
Sbjct:   256 EAFMKSINRDSTCVNSL-ISIHHM--ILTNQETVSRFLELDLVNITVEMLVDSENSVCEK 312

Query:   303 ALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYXXXXXXXXXXXXERCQRD 362
             AL  + ++C    G  +   + L +P+LVK ILKIS++                   + +
Sbjct:   313 ALTVLNVICETKEGREKVRRNKLVIPILVKKILKISEKKDLVSVMWKVCKSGDGSEVE-E 371

Query:   363 AVSAGVLTQLLLLVQSDC 380
             A+  G   +L++++Q  C
Sbjct:   372 ALRLGAFKKLVVMLQVGC 389

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2097390 AT3G49810 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 8.6e-29, Sum P(2) = 8.6e-29
 Identities = 41/76 (53%), Positives = 48/76 (63%)

Query:     5 LEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64
             ++ LDL   IP  F CPISLE M DPVT+CTGQTY+R +I  W   G+ TCP T   L D
Sbjct:    56 IKELDLQ-DIPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWD 114

Query:    65 FTLIPNHTLRRLIQDW 80
              T+ PN TL  LI  W
Sbjct:   115 DTVTPNKTLHHLIYTW 130

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 324 (119.1 bits), Expect = 1.8e-28, P = 1.8e-28
 Identities = 102/323 (31%), Positives = 152/323 (47%)

Query:    14 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTL 73
             IP  F CP+SLELM DPV V TGQTY+R  I+ W+  GN TCP T+  L +FTL PN+ L
Sbjct:   241 IPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNYVL 300

Query:    74 RRLIQDWCVAN---RSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYXXXXXXXXXXXX 130
             R LI  WC  +   +  G     T K   + S++R L+ + SS S T             
Sbjct:   301 RSLISRWCAEHNIEQPAGYINGRT-KNSGDMSVIRALVQRLSSRS-TEDRRNAVSEIRSL 358

Query:   131 XXXDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEI 190
                 +D NR LI+      +L       +N+ T+        ++  ++   + E    E+
Sbjct:   359 SKRSTD-NRILIAEAGAIPVL-------VNLLTSEDVATQENAITCVLNLSIYENN-KEL 409

Query:   191 ASDADKITSLSSLLFHSSIEVRVNSAA-LIEIVLAGMRSQELRAQISNLDEIFEGVIDIL 249
                A  +TS+  +L   ++E R N+AA L  + LA     E +  I     I   ++D+L
Sbjct:   410 IMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLA----DENKIIIGGSGAI-PALVDLL 464

Query:   250 KNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCD-AERALATVE 308
             +N    PRG K    ALF LC+    + +AV AG    LV  L+D  +    + AL  + 
Sbjct:   465 EN--GTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVKMLSDSTRHRMVDEALTILS 522

Query:   309 LLCRIPAGCAEFAEHALTVPLLV 331
             +L       +   + A T+P L+
Sbjct:   523 VLANNQDAKSAIVK-ANTLPALI 544

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2079964 PUB22 "plant U-box 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 315 (115.9 bits), Expect = 3.1e-28, P = 3.1e-28
 Identities = 72/202 (35%), Positives = 113/202 (55%)

Query:     8 LDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGN-TTCPVTRSPLTDFT 66
             +D  ++IP  F CPISL++M DPV V TG TYDR SIE W+ +G   +CPVT+  +T+  
Sbjct:     1 MDQEIEIPSFFLCPISLDIMKDPVIVSTGITYDRESIEKWLFSGKKNSCPVTKQVITETD 60

Query:    67 LIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYXXXXXXXX 126
             L PNHTLRRLIQ WC  N S+G++RIPTPK P   S +  L+ ++SS   ++        
Sbjct:    61 LTPNHTLRRLIQSWCTLNASYGIERIPTPKPPICKSEIEKLIKESSS---SHLNQVKCLK 117

Query:   127 XXXXXXXDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETE 186
                    ++  N+  + +  V   L+ +  +N +V T +SP     SL+   +  + ++ 
Sbjct:   118 RLRQIVSENTTNKRCLEAAEVPEFLANIV-SN-SVDTYNSPS---SSLSSSNLNDMCQSN 172

Query:   187 CMEIASDADK--ITSLSSLLFH 206
              +E   D+ +  +    S+L+H
Sbjct:   173 MLENRFDSSRSLMDEALSVLYH 194

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0006865 "amino acid transport" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 308 (113.5 bits), Expect = 9.8e-27, P = 9.8e-27
 Identities = 102/340 (30%), Positives = 164/340 (48%)

Query:    14 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTL 73
             IP  FRCPISLELM DPV V +GQTY+R  I+ W+ +G+ TCP T+ PL+  +L PN  L
Sbjct:   228 IPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVL 287

Query:    74 RRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYXXXXXXXXXXXXXXX 133
             + LI  WC AN   G++ +P  KQ +         ++ +++S+ Y               
Sbjct:   288 KSLISQWCEAN---GIE-LPKNKQNSR--------DKKAAKSSDYDHAGLVSLMNRLRSG 335

Query:   134 DSDKNRS------LISSHNV--RAILSQVFFTN--INVKTASSPELAHESLALLVMFPLT 183
             + D+ R+      L++  NV  R  +++       +N+ ++S P     ++  L+   + 
Sbjct:   336 NQDEQRAAAGEIRLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIH 395

Query:   184 ETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFE 243
             E     I  D+  I  +  +L   S+E R N+AA +   L+ +   E +  I     I  
Sbjct:   396 ENNKASIV-DSHAIPKIVEVLKTGSMETRENAAATL-FSLSVV--DENKVTIGAAGAI-P 450

Query:   244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERA 303
              +I++L + S  PRG K    A+F LC+ +  + +AV AG    L++ L D      + A
Sbjct:   451 PLINLLCDGS--PRGKKDAATAIFNLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGMIDEA 508

Query:   304 LATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATE 343
             L+ + +L   P G    A     +P LV+ I   S R  E
Sbjct:   509 LSLLSILAGNPEGKIVIARSE-PIPPLVEVIKTGSPRNRE 547

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

TAIR|locus:2075140 PUB13 "plant U-box 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 307 (113.1 bits), Expect = 1.6e-26, P = 1.6e-26
 Identities = 108/335 (32%), Positives = 152/335 (45%)

Query:    14 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTL 73
             IP  FRCPISLE+M DPV V +GQTY+R  IE W+  G++TCP T+  LT  TL PN+ L
Sbjct:   256 IPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVL 315

Query:    74 RRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYXXXXXXXXXXXXXXX 133
             R LI  WC AN    ++  P P     P  V +  + A  E+N                 
Sbjct:   316 RSLIAQWCEAN---DIEP-PKPPSSLRPRKVSSFSSPA--EANKIEDLMWRLAYGNPEDQ 369

Query:   134 DSDKNR-SLISSHNV--RAILSQVFFTNINVKTASSPE--LAHESLALLVMFPLTETECM 188
              S      L++  N   R  +++     + V   S+P+  +   S+  L+   + E    
Sbjct:   370 RSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQEHSVTALLNLSICENNKG 429

Query:   189 EIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDI 248
              I S A  I  +  +L   S+E R N+AA +   L+ +   E +  I  L  I   V+  
Sbjct:   430 AIVS-AGAIPGIVQVLKKGSMEARENAAATL-FSLSVI--DENKVTIGALGAIPPLVV-- 483

Query:   249 LKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVE 308
             L N  +  RG K    ALF LC+ +  + KA+ AG   TL   L +      + ALA + 
Sbjct:   484 LLNEGTQ-RGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGMVDEALAILA 542

Query:   309 LLCRIPAGCAEFAEHALTVPLLVKTILKISDRATE 343
             +L   P G A        VP LV+ I   S R  E
Sbjct:   543 ILSSHPEGKAIIGSSD-AVPSLVEFIRTGSPRNRE 576

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=IGI

GO:0000902 "cell morphogenesis" evidence=RCA

GO:0006487 "protein N-linked glycosylation" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0016049 "cell growth" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0048767 "root hair elongation" evidence=RCA

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FXA4	PUB26_ARATH	6, ., 3, ., 2, ., -	0.6872	0.9976	0.9904	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	418
smart00504	63	smart00504, Ubox, Modified RING finger domain	9e-27
pfam04564	73	pfam04564, U-box, U-box domain	7e-20
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	1e-04
pfam11789	57	pfam11789, zf-Nse, Zinc-finger of the MIZ type in	0.003

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score =  101 bits (253), Expect = 9e-27
 Identities = 34/64 (53%), Positives = 44/64 (68%), Gaps = 1/64 (1%)

Query: 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRL 76
           F CPISLE+M DPV + +GQTY+R +IE W+ + + T PVT  PLT   LIPN  L+  
Sbjct: 1  EFLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSA 59

Query: 77 IQDW 80
          IQ+W
Sbjct: 60 IQEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 82.7 bits (205), Expect = 7e-20
 Identities = 35/72 (48%), Positives = 43/72 (59%)

Query: 14 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTL 73
          IP  F  PI+LELM DPV + +G TYDR +IE  + + + T P TR PLT   LIPN  L
Sbjct: 1  IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60

Query: 74 RRLIQDWCVANR 85
          +  I  W   NR
Sbjct: 61 KEKIDAWLEENR 72

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 5/46 (10%)

Query: 17 HFRCPISLELMCD----PVTVCTGQTYDRPSIESWVATGNT-TCPV 57
           F CPIS E+M D    PV +  G  Y R ++E     G    CP 
Sbjct: 10 IFVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCPY 55

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

>gnl|CDD|192832 pfam11789, zf-Nse, Zinc-finger of the MIZ type in Nse subunit

 Score = 35.3 bits (82), Expect = 0.003
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 4/43 (9%)

Query: 18 FRCPISLELMCDPVT--VCTGQTYDRPSIESWVATGNTT-CPV 57
            CP++L+   +PVT   C    +++ +I S +    T  CPV
Sbjct: 12 LTCPLTLQPFEEPVTSKKC-NHVFEKDAILSMLRRNKTVKCPV 53

Nse1 and Nse2 are novel non-SMC subunits of the fission yeast Smc5-6 DNA repair complex. This family is the zinc-finger domain similar to the MIZ type of zinc-finger. Length = 57

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	418
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.97
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.97
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.97
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.95
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.95
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.94
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.93
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.85
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.85
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.84
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.83
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.83
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.81
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.78
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.71
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.7
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.69
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.61
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.53
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.49
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.41
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.41
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.4
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.4
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.34
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.33
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.26
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.25
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.25
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.23
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.16
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.15
PRK09687	280	putative lyase; Provisional	99.13
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.07
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.03
PRK09687	280	putative lyase; Provisional	99.03
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	98.99
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	98.94
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.92
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.9
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.89
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	98.88
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.88
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.87
PHA02929	238	N1R/p28-like protein; Provisional	98.83
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.81
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.77
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.77
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.74
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.72
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.72
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.72
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.7
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.67
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.67
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.65
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.64
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.63
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.61
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.61
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.56
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.56
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.55
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.53
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.53
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.5
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.44
PHA02926	242	zinc finger-like protein; Provisional	98.42
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.42
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.38
PF14634	44	zf-RING_5: zinc-RING finger domain	98.34
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.33
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.29
PF05536	543	Neurochondrin: Neurochondrin	98.27
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.24
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.23
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.18
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.18
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.17
PF05536	543	Neurochondrin: Neurochondrin	98.17
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.14
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.13
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.13
PTZ00429	746	beta-adaptin; Provisional	98.1
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.1
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.09
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.09
KOG2660	331	consensus Locus-specific chromosome binding protei	98.06
COG5222	427	Uncharacterized conserved protein, contains RING Z	98.05
PTZ00429	746	beta-adaptin; Provisional	98.05
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.03
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	98.03
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.02
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.02
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.02
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	97.94
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.93
TIGR02270	410	conserved hypothetical protein. Members are found	97.91
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.87
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.87
KOG0289	506	consensus mRNA splicing factor [General function p	97.8
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.76
TIGR02270	410	conserved hypothetical protein. Members are found	97.76
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.7
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.67
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	97.67
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.63
COG5369	743	Uncharacterized conserved protein [Function unknow	97.61
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.57
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.55
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.5
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.5
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.49
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.48
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.45
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.45
KOG3039	303	consensus Uncharacterized conserved protein [Funct	97.42
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.41
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.4
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.4
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.38
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	97.38
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.37
KOG0212	675	consensus Uncharacterized conserved protein [Funct	97.33
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.3
PF04641	260	Rtf2: Rtf2 RING-finger	97.3
COG5152	259	Uncharacterized conserved protein, contains RING a	97.3
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.3
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.29
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.27
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.24
COG5369	743	Uncharacterized conserved protein [Function unknow	97.2
COG1413	335	FOG: HEAT repeat [Energy production and conversion	97.19
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.18
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	97.16
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.13
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	97.12
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.1
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.1
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	97.08
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.08
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.98
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.91
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	96.87
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.86
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.86
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.85
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.85
KOG4367	699	consensus Predicted Zn-finger protein [Function un	96.8
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	96.79
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	96.78
KOG2979	262	consensus Protein involved in DNA repair [General	96.78
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.78
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	96.77
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.76
KOG4413	524	consensus 26S proteasome regulatory complex, subun	96.75
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.73
KOG3036	293	consensus Protein involved in cell differentiation	96.68
KOG0567	289	consensus HEAT repeat-containing protein [General	96.66
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.65
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.62
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.58
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	96.52
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.51
KOG3113	293	consensus Uncharacterized conserved protein [Funct	96.5
KOG3036	293	consensus Protein involved in cell differentiation	96.47
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.44
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.42
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	96.37
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.29
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	96.26
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.23
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.23
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.15
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.01
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	96.0
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	95.97
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.95
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.87
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.84
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	95.75
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.67
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.66
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	95.61
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.58
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.48
KOG2259	823	consensus Uncharacterized conserved protein [Funct	95.4
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.4
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.33
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.3
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	95.22
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	95.21
PF05004	309	IFRD: Interferon-related developmental regulator (	95.15
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.14
COG5096	757	Vesicle coat complex, various subunits [Intracellu	95.11
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	95.06
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	95.05
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	94.96
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	94.9
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	94.88
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	94.88
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.76
PF05004	309	IFRD: Interferon-related developmental regulator (	94.74
COG5109	396	Uncharacterized conserved protein, contains RING Z	94.74
PF08045	257	CDC14: Cell division control protein 14, SIN compo	94.63
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.63
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	94.61
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.59
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.57
PRK14707	2710	hypothetical protein; Provisional	94.56
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.54
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	94.51
KOG0825	1134	consensus PHD Zn-finger protein [General function	94.29
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.22
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	94.11
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	94.05
COG5175	480	MOT2 Transcriptional repressor [Transcription]	94.02
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	93.96
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	93.89
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	93.85
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	93.82
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	93.81
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	93.74
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	93.71
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	93.63
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	93.63
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.62
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	93.5
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	93.43
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.42
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	93.41
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	93.34
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	93.21
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	93.17
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.14
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	93.12
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.01
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	92.92
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	92.91
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	92.89
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	92.83
KOG1001	674	consensus Helicase-like transcription factor HLTF/	92.6
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	92.27
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	92.23
KOG0567	289	consensus HEAT repeat-containing protein [General	92.18
PRK14707	2710	hypothetical protein; Provisional	92.11
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	92.11
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	91.96
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	91.76
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	91.48
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	91.45
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	91.32
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	91.31
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	91.31
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	91.29
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	91.09
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	91.07
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	91.01
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	90.78
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	90.64
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	90.49
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	90.43
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	90.37
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	90.34
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	90.32
cd03561	133	VHS VHS domain family; The VHS domain is present i	90.07
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	89.99
KOG2025	892	consensus Chromosome condensation complex Condensi	89.96
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	89.94
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	89.85
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	89.59
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	89.53
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	89.42
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	89.34
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	89.26
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	88.87
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	88.21
PF04641	260	Rtf2: Rtf2 RING-finger	87.89
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	87.82
COG5219	1525	Uncharacterized conserved protein, contains RING Z	87.8
KOG2025	892	consensus Chromosome condensation complex Condensi	87.7
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	87.61
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	87.55
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	87.36
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	87.21
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	87.17
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	86.95
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	86.93
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	86.69
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	86.46
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	86.37
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	86.19
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	86.08
KOG4653	982	consensus Uncharacterized conserved protein [Funct	85.83
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	85.79
KOG0301	745	consensus Phospholipase A2-activating protein (con	85.59
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	85.38
KOG4653	982	consensus Uncharacterized conserved protein [Funct	85.3
COG5098	1128	Chromosome condensation complex Condensin, subunit	84.41
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	84.39
KOG0298	1394	consensus DEAD box-containing helicase-like transc	83.65
KOG0301	745	consensus Phospholipase A2-activating protein (con	83.6
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	83.05
KOG0414	1251	consensus Chromosome condensation complex Condensi	82.98
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	82.85
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	82.59
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	82.49
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	82.39
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	82.27
KOG2933	334	consensus Uncharacterized conserved protein [Funct	82.22
KOG2137	700	consensus Protein kinase [Signal transduction mech	82.2
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	82.03
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	81.33
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	81.19
KOG2032	533	consensus Uncharacterized conserved protein [Funct	80.71
KOG3002	299	consensus Zn finger protein [General function pred	80.7
PF07814	361	WAPL: Wings apart-like protein regulation of heter	80.66
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	80.41

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.97  E-value=8.4e-30  Score=278.47  Aligned_cols=286  Identities=20%  Similarity=0.151  Sum_probs=250.1

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhh-cChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISS-HNVRAILSQVFFTNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      ...+..+++.|+++....+.+..|+..|+.+++.++++|..+.+ .|++|.|+.+|.++       +..+++.|+.+|.+
T Consensus        12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~sg-------~~~vk~nAaaaL~n   84 (2102)
T PLN03200         12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSG-------TLGAKVNAAAVLGV   84 (2102)
T ss_pred             HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcCC-------CHHHHHHHHHHHHH
Confidence            45789999999977433445788999999999999999999986 89999999999877       57899999999999


Q ss_pred             CCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccc---hhhhhHhhchhhhHHHHHHHhhcCCC-C
Q 014817          180 FPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRS---QELRAQISNLDEIFEGVIDILKNLSS-Y  255 (418)
Q Consensus       180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~-~  255 (418)
                      ++.++ +++..|+..|+|++|+.+|++++.+.|+.|+++|++|+   .+   ++++..|+...|+||+|+.+++++.. +
T Consensus        85 LS~~e-~nk~~Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS---~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d  160 (2102)
T PLN03200         85 LCKEE-DLRVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVS---SGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQD  160 (2102)
T ss_pred             HhcCH-HHHHHHHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHH---cCcchhhhhhhhhhhcCChHHHHHHHhCCchhh
Confidence            99886 89999999999999999999999999999999999994   43   66676766668999999999998731 1


Q ss_pred             hhhhHHHHHHHHHHccccccHHH-HHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHH
Q 014817          256 PRGLKVGIKALFALCLVKQTRYK-AVAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKT  333 (418)
Q Consensus       256 ~~~~~~a~~aL~~L~~~~~n~~~-i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~  333 (418)
                      ..+++.++.+|+||+.+.+++.. ++++|+||.|+.+|.++++..+..|+.+|.+++.+ ++.+..+++ +|+||.|+++
T Consensus       161 ~~L~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLsS~d~~lQ~eAa~aLa~Lass~ee~~~aVIe-aGaVP~LV~L  239 (2102)
T PLN03200        161 KVVEGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLD-AGAVKQLLKL  239 (2102)
T ss_pred             HHHHHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCChHHHHHHHH-CCCHHHHHHH
Confidence            23567788999999999998865 58999999999999999999999999999888855 779999998 5999999999


Q ss_pred             Hhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCC--------CHHHHHHHHHHHHHHHhh
Q 014817          334 ILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDC--------TDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       334 l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~--------~~~~~~~A~~~L~~l~~~  398 (418)
                      |.+ .+..++++|+++|.+||.++++.+..+++.|+++.|+.++.++.        +...++.|.|+|.|++..
T Consensus       240 L~sg~~~~VRE~AA~AL~nLAs~s~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcgg  313 (2102)
T PLN03200        240 LGQGNEVSVRAEAAGALEALSSQSKEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICGG  313 (2102)
T ss_pred             HccCCChHHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhCC
Confidence            977 45689999999999999999999999999999999999997541        245699999999999984

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.4e-30  Score=246.54  Aligned_cols=284  Identities=15%  Similarity=0.165  Sum_probs=248.8

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF  180 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l  180 (418)
                      .+-++.+|+.|...+.+. .+++|+++|.++++++.+.-..++++|++|.++.+|.++       +..+++.|+++|+|+
T Consensus       108 ~G~v~~lV~~l~~~~~~~-lq~eAAWaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~-------~~~v~eQavWALgNI  179 (514)
T KOG0166|consen  108 SGVVPRLVEFLSRDDNPT-LQFEAAWALTNIASGTSEQTKVVVDAGAVPIFIQLLSSP-------SADVREQAVWALGNI  179 (514)
T ss_pred             cCcHHHHHHHHccCCChh-HHHHHHHHHHHHhcCchhhccccccCCchHHHHHHhcCC-------cHHHHHHHHHHHhcc
Confidence            367899999998765433 479999999999999999999999999999999999988       589999999999999


Q ss_pred             CCChhHHHhhcccCCchHHHHHHhcCCCH-HHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817          181 PLTETECMEIASDADKITSLSSLLFHSSI-EVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~-~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      +.+...+|..+.+.|++++|+.++...+. ....+++|+|.||   +...+-...+.....++|.|..++.+.  |+++.
T Consensus       180 agds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNl---crgk~P~P~~~~v~~iLp~L~~ll~~~--D~~Vl  254 (514)
T KOG0166|consen  180 AGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNL---CRGKNPSPPFDVVAPILPALLRLLHST--DEEVL  254 (514)
T ss_pred             ccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHH---HcCCCCCCcHHHHHHHHHHHHHHHhcC--CHHHH
Confidence            99998999999999999999999988765 7888999999999   444432333333356999999999999  99999


Q ss_pred             HHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-C
Q 014817          260 KVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-I  337 (418)
Q Consensus       260 ~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~  337 (418)
                      ..|+|||++|+.+. +....++++|++|.|+.+|.+.+..++..|+.++.|++.+.+...+.+-..|+++.|..++.. .
T Consensus       255 ~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~  334 (514)
T KOG0166|consen  255 TDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSP  334 (514)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCc
Confidence            99999999999665 566667899999999999999999999999999999997665555444446999999999985 5


Q ss_pred             ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       338 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      ....++.|+|+|.||+.|+.+..+.++++|+++.|+.+|+++ .-+.|+.|+|++.|+...
T Consensus       335 ~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts~  394 (514)
T KOG0166|consen  335 KESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTSS  394 (514)
T ss_pred             chhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhccc
Confidence            666899999999999999999999999999999999999888 899999999999998874

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.97  E-value=3.3e-28  Score=266.05  Aligned_cols=285  Identities=17%  Similarity=0.137  Sum_probs=247.1

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +.++.|++.|++++.  ..+..|++.|+.++..+++++..++++|++|.|+++|.++       +.+++++|+++|.|++
T Consensus       446 ggIp~LV~LL~s~s~--~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~-------~~~iqeeAawAL~NLa  516 (2102)
T PLN03200        446 EGVQLLISLLGLSSE--QQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETG-------SQKAKEDSATVLWNLC  516 (2102)
T ss_pred             CcHHHHHHHHcCCCH--HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence            468899999998754  3468899999999999999999999999999999999877       5799999999999999


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch--------------------------------
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ--------------------------------  229 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~--------------------------------  229 (418)
                      .+.++.+..+.+.|++++|+++|++++.+.+..|+++|.+|+.....+                                
T Consensus       517 ~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~  596 (2102)
T PLN03200        517 CHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVAS  596 (2102)
T ss_pred             CCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence            877566777778999999999999999999999999999994211110                                


Q ss_pred             --hhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHH
Q 014817          230 --ELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALAT  306 (418)
Q Consensus       230 --~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~  306 (418)
                        +.........|+++.|+++++++  ++..++.|+++|.+++.+. +++..++..|+|++|+.+|.+++.+++..++++
T Consensus       597 ~~d~~~~g~~~~ggL~~Lv~LL~sg--s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~~~v~keAA~A  674 (2102)
T PLN03200        597 LEDLVREGSAANDALRTLIQLLSSS--KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARA  674 (2102)
T ss_pred             hhHHHHHhhhccccHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCChHHHHHHHHH
Confidence              00111112358999999999999  8999999999999999764 578889999999999999999999999999999


Q ss_pred             HHHHhc--CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHH
Q 014817          307 VELLCR--IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRA  384 (418)
Q Consensus       307 L~~L~~--~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  384 (418)
                      |.+|+.  .++++..+++ .|+|++|++++...+..+.+.|+.+|.||+. .++.+.++.++|+++.|+++|+++ +++.
T Consensus       675 L~nL~~~~~~~q~~~~v~-~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~-~~e~~~ei~~~~~I~~Lv~lLr~G-~~~~  751 (2102)
T PLN03200        675 LAALSRSIKENRKVSYAA-EDAIKPLIKLAKSSSIEVAEQAVCALANLLS-DPEVAAEALAEDIILPLTRVLREG-TLEG  751 (2102)
T ss_pred             HHHHHhCCCHHHHHHHHH-cCCHHHHHHHHhCCChHHHHHHHHHHHHHHc-CchHHHHHHhcCcHHHHHHHHHhC-ChHH
Confidence            999994  4556667777 5999999999999999999999999999999 667788899999999999999888 9999


Q ss_pred             HHHHHHHHHHHHhhCC
Q 014817          385 KRKAQLLLKLLRDSWP  400 (418)
Q Consensus       385 ~~~A~~~L~~l~~~~~  400 (418)
                      |+.|+++|..|+.+..
T Consensus       752 k~~Aa~AL~~L~~~~~  767 (2102)
T PLN03200        752 KRNAARALAQLLKHFP  767 (2102)
T ss_pred             HHHHHHHHHHHHhCCC
Confidence            9999999999998754

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.96  E-value=1.4e-28  Score=221.24  Aligned_cols=287  Identities=11%  Similarity=0.110  Sum_probs=249.3

Q ss_pred             CChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817           99 AEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV  178 (418)
Q Consensus        99 ~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~  178 (418)
                      ++.+-++++|++|.....+. .+++|+++|.+++++....-...+++|++|.++++|.+.       +.+|+++++++|+
T Consensus       111 IdaGvVpRfvefm~~~q~~m-lqfEAaWalTNiaSGtt~QTkvVvd~~AVPlfiqlL~s~-------~~~V~eQavWALG  182 (526)
T COG5064         111 IDAGVVPRFVEFMDEIQRDM-LQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSST-------EDDVREQAVWALG  182 (526)
T ss_pred             HhccccHHHHHHHHhcchhH-HHHHHHHHHhhhccCcccceEEEEeCCchHHHHHHHcCc-------hHHHHHHHHHHhc
Confidence            46677899999997655444 368999999999998877777889999999999999888       5789999999999


Q ss_pred             cCCCChhHHHhhcccCCchHHHHHHhcCCC--HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCCh
Q 014817          179 MFPLTETECMEIASDADKITSLSSLLFHSS--IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYP  256 (418)
Q Consensus       179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~--~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~  256 (418)
                      |++.+.+.+|..+.+.|++++++.+|.+..  .....+++|+|.||+.|..-...-..|   ..++|.|.+++...  ++
T Consensus       183 NiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i---sqalpiL~KLiys~--D~  257 (526)
T COG5064         183 NIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI---SQALPILAKLIYSR--DP  257 (526)
T ss_pred             cccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH---HHHHHHHHHHHhhc--CH
Confidence            999999899999999999999999998775  477889999999995433333333344   34899999999998  89


Q ss_pred             hhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHh
Q 014817          257 RGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTIL  335 (418)
Q Consensus       257 ~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~  335 (418)
                      ++...|+|||.+|+.... ....+++.|..+.|+++|.+++..++..++..+.|+....+.+.+++-..|+++.+-.+|.
T Consensus       258 evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs  337 (526)
T COG5064         258 EVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLS  337 (526)
T ss_pred             HHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCeeecCccceehheecccHHHHHHHhc
Confidence            999999999999997764 5566689999999999999999999999999999999776665555544699999999999


Q ss_pred             cCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          336 KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       336 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      +....+++.|+|++.||+.|+.+..+.+++++.+|+|+.+|.+. .-.+|+.|+|++.|...+.
T Consensus       338 ~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNatsgg  400 (526)
T COG5064         338 SPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATSGG  400 (526)
T ss_pred             ChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhccc
Confidence            98889999999999999999999999999999999999999877 8899999999999987754

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.9e-27  Score=211.61  Aligned_cols=278  Identities=16%  Similarity=0.127  Sum_probs=247.0

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      .+..|+.++.++...  .+..|++.+.+++.- +.+|..|...|++.+|.++-++.       +-.+|.+++.+|.++..
T Consensus       127 Gl~~Li~qmmtd~ve--vqcnaVgCitnLaT~-d~nk~kiA~sGaL~pltrLaksk-------dirvqrnatgaLlnmTh  196 (550)
T KOG4224|consen  127 GLDLLILQMMTDGVE--VQCNAVGCITNLATF-DSNKVKIARSGALEPLTRLAKSK-------DIRVQRNATGALLNMTH  196 (550)
T ss_pred             ChHHHHHHhcCCCcE--EEeeehhhhhhhhcc-ccchhhhhhccchhhhHhhcccc-------hhhHHHHHHHHHHHhhh
Confidence            345566666665433  457899999999976 67899999999999999966665       46899999999999987


Q ss_pred             ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhh--hHHHHHHHhhcCCCChhhhH
Q 014817          183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE--IFEGVIDILKNLSSYPRGLK  260 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~~~~~~~  260 (418)
                      .. ++|+.++.+|++|.||.+++++++.++++++.+|.++   +.+..+|+.++. .|  +++.|+.+.+++  ++.++-
T Consensus       197 s~-EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnI---aVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~--s~kvkc  269 (550)
T KOG4224|consen  197 SR-ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNI---AVDRRARKILAQ-AEPKLVPALVDLMDDG--SDKVKC  269 (550)
T ss_pred             hh-hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhh---hhhHHHHHHHHh-cccchHHHHHHHHhCC--ChHHHH
Confidence            77 8999999999999999999999999999999999999   899999998876 45  999999999999  899999


Q ss_pred             HHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CCh
Q 014817          261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISD  339 (418)
Q Consensus       261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~  339 (418)
                      .|..+|.||+...+....++++|.+|.++++|+++........+.+++|++-++-+---|++ +|++.+||.+|.. .+.
T Consensus       270 qA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~d-agfl~pLVrlL~~~dnE  348 (550)
T KOG4224|consen  270 QAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIAD-AGFLRPLVRLLRAGDNE  348 (550)
T ss_pred             HHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceec-ccchhHHHHHHhcCCch
Confidence            99999999999999999999999999999999998888888889999999998888888888 5999999999988 566


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          340 RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       340 ~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ..|-+|..+||+|+..++..+..+.+.|++++|..++..+ +-..|..-...+..|+-+.
T Consensus       349 eiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal~d  407 (550)
T KOG4224|consen  349 EIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLALND  407 (550)
T ss_pred             hhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHhcc
Confidence            6999999999999998888999999999999999999776 8888888777777777653

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=3.4e-26  Score=220.89  Aligned_cols=285  Identities=18%  Similarity=0.145  Sum_probs=240.0

Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcCh-hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSD-KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      ....+..+.|.+.  +.+..+...++.+.+... ..-......|.+|.+|.+|...+      ++.++..|+++|.|++.
T Consensus        68 ~~~~~~~~~S~~~--~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~------~~~lq~eAAWaLTnIAs  139 (514)
T KOG0166|consen   68 LELMLAALYSDDP--QQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDD------NPTLQFEAAWALTNIAS  139 (514)
T ss_pred             hHHHHHHHhCCCH--HHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCC------ChhHHHHHHHHHHHHhc
Confidence            5667777777754  346889999998876422 22333445699999999998664      68999999999999999


Q ss_pred             ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817          183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG  262 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a  262 (418)
                      +..+..+.++++|+++.++++|.+++..+++.|+|+|.|++  ......|..+ ...|++++|+.++.... .....+++
T Consensus       140 gtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIa--gds~~~Rd~v-l~~g~l~pLl~~l~~~~-~~~~lRn~  215 (514)
T KOG0166|consen  140 GTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIA--GDSPDCRDYV-LSCGALDPLLRLLNKSD-KLSMLRNA  215 (514)
T ss_pred             CchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccc--cCChHHHHHH-HhhcchHHHHHHhcccc-chHHHHHH
Confidence            98888899999999999999999999999999999999995  4555656555 45899999999999883 34788999


Q ss_pred             HHHHHHHccccccHHHH-HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817          263 IKALFALCLVKQTRYKA-VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRA  341 (418)
Q Consensus       263 ~~aL~~L~~~~~n~~~i-~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~  341 (418)
                      .|+|+|||.+......+ .-..++|.|..+|.+.|.++...|+|+|+.|+.++..+..++-.+|+++.||.+|.+.+..+
T Consensus       216 tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v  295 (514)
T KOG0166|consen  216 TWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKV  295 (514)
T ss_pred             HHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCccc
Confidence            99999999987543333 33679999999999999999999999999999666555555444799999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          342 TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       342 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      +..|++++.||+.|+....+.+++.|+++.|..++.....+.+|+.|+|++.|+....+
T Consensus       296 ~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~  354 (514)
T KOG0166|consen  296 VTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQ  354 (514)
T ss_pred             ccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCH
Confidence            99999999999999999999999999999999999855477799999999999987543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=6.8e-26  Score=205.56  Aligned_cols=277  Identities=13%  Similarity=0.163  Sum_probs=244.3

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +.+..+.+ |..+. +...+..|..+|.++.. +.++|+.++.+|++|.|+.++.+.       +..+|..+..++.+++
T Consensus       167 GaL~pltr-Laksk-dirvqrnatgaLlnmTh-s~EnRr~LV~aG~lpvLVsll~s~-------d~dvqyycttaisnIa  236 (550)
T KOG4224|consen  167 GALEPLTR-LAKSK-DIRVQRNATGALLNMTH-SRENRRVLVHAGGLPVLVSLLKSG-------DLDVQYYCTTAISNIA  236 (550)
T ss_pred             cchhhhHh-hcccc-hhhHHHHHHHHHHHhhh-hhhhhhhhhccCCchhhhhhhccC-------ChhHHHHHHHHhhhhh
Confidence            34445555 43332 33346789999999985 578999999999999999999988       5899999999999999


Q ss_pred             CChhHHHhhcccCC--chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817          182 LTETECMEIASDAD--KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       182 ~~~~~~~~~i~~~g--~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      .+. ..|+.+++.+  .++.||.++.++++.++..|..+|++|   +.+.++...|.+ .|.+|.|+++|+++  .....
T Consensus       237 Vd~-~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnl---asdt~Yq~eiv~-ag~lP~lv~Llqs~--~~pli  309 (550)
T KOG4224|consen  237 VDR-RARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNL---ASDTEYQREIVE-AGSLPLLVELLQSP--MGPLI  309 (550)
T ss_pred             hhH-HHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhh---cccchhhhHHHh-cCCchHHHHHHhCc--chhHH
Confidence            887 7899998777  999999999999999999999999999   788888888876 79999999999988  56677


Q ss_pred             HHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCc-ccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcC
Q 014817          260 KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDK-CDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKI  337 (418)
Q Consensus       260 ~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~  337 (418)
                      .....+++|++.++-|-..|+++|.+.+|+++|..++. +++-.|..+|++|+. +..++..+++ .|+|+.+.+++..+
T Consensus       310 lasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~  388 (550)
T KOG4224|consen  310 LASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDG  388 (550)
T ss_pred             HHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcC
Confidence            77888999999999999999999999999999987654 599999999999997 6678888888 59999999999999


Q ss_pred             ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       338 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      .-.+|+.-..++..|+. +...+..+.+.|.++.|+....+. +.+++.+|+.+|-||+..
T Consensus       389 pvsvqseisac~a~Lal-~d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss~  447 (550)
T KOG4224|consen  389 PVSVQSEISACIAQLAL-NDNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSSD  447 (550)
T ss_pred             ChhHHHHHHHHHHHHHh-ccccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhhh
Confidence            99999999999999888 667788899999999999999888 999999999999999874

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.93  E-value=2.5e-25  Score=200.33  Aligned_cols=282  Identities=16%  Similarity=0.098  Sum_probs=236.5

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhh-cChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLAR-DSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF  180 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l  180 (418)
                      ..++.+.+.|.|.  +.+.+..|....|.+.+ +....-+..+++|.+|.+++++....      +.-.+-.|+++|.|+
T Consensus        71 ~elp~lt~~l~Sd--Die~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q------~~mlqfEAaWalTNi  142 (526)
T COG5064          71 SELPQLTQQLFSD--DIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQ------RDMLQFEAAWALTNI  142 (526)
T ss_pred             hhhHHHHHHHhhh--HHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcc------hhHHHHHHHHHHhhh
Confidence            4568888888876  45566889999987665 44445566788999999999996543      345678899999999


Q ss_pred             CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817          181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK  260 (418)
Q Consensus       181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  260 (418)
                      +.+.....+.+++.|++|.++++|.+++.++++.++|+|.|++  ...+..|..+ ...|++++|+.++.+...+....+
T Consensus       143 aSGtt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiA--GDS~~~RD~v-L~~galeplL~ll~ss~~~ismlR  219 (526)
T COG5064         143 ASGTTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIA--GDSEGCRDYV-LQCGALEPLLGLLLSSAIHISMLR  219 (526)
T ss_pred             ccCcccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhcccc--CCchhHHHHH-HhcCchHHHHHHHHhccchHHHHH
Confidence            9888566777789999999999999999999999999999994  4445555555 447999999999997743568999


Q ss_pred             HHHHHHHHHccccc---cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcC
Q 014817          261 VGIKALFALCLVKQ---TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI  337 (418)
Q Consensus       261 ~a~~aL~~L~~~~~---n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~  337 (418)
                      ++.|+|.|||....   +...+  .-++|.|..++.+.|+++...|+|++..|+..+..+..++-+.|..+.||++|.+.
T Consensus       220 n~TWtLSNlcRGknP~P~w~~i--sqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~  297 (526)
T COG5064         220 NATWTLSNLCRGKNPPPDWSNI--SQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE  297 (526)
T ss_pred             HhHHHHHHhhCCCCCCCchHHH--HHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc
Confidence            99999999997643   33333  23799999999999999999999999999988766665555579999999999999


Q ss_pred             ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       338 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      +..++..|++.+.||..|+....+.+++.|+++.+..+|++. -+++|+.|+|++.|+..
T Consensus       298 sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~-ke~irKEaCWTiSNITA  356 (526)
T COG5064         298 SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSP-KENIRKEACWTISNITA  356 (526)
T ss_pred             cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcCh-hhhhhhhhheeeccccc
Confidence            999999999999999999999999999999999999999777 78999999999999875

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.85  E-value=2.5e-19  Score=161.60  Aligned_cols=273  Identities=12%  Similarity=0.136  Sum_probs=230.9

Q ss_pred             chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCc
Q 014817          117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADK  196 (418)
Q Consensus       117 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~  196 (418)
                      +..-..+++.+|-.+....|+    +.++.+...++.+|....+     +.++....+..+..-+...+.+|+.+++.++
T Consensus       120 ~~~~l~ksL~al~~lt~~qpd----l~da~g~~vvv~lL~~~~~-----~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~i  190 (461)
T KOG4199|consen  120 NESVLKKSLEAINSLTHKQPD----LFDAEAMAVVLKLLALKVE-----SEEVTLLTLQWLQKACIMHEVNRQLFMELKI  190 (461)
T ss_pred             chhHHHHHHHHHHHhhcCCcc----hhccccHHHHHHHHhcccc-----hHHHHHHHHHHHHHHHHHhHHHHHHHHHhhH
Confidence            333456788888888766554    6678889999999976543     5677777788888777777789999999999


Q ss_pred             hHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccchhhhhHhh---------chhhhHHHHHHHhhcCCCChhhhHHHHHHH
Q 014817          197 ITSLSSLL-FHSSIEVRVNSAALIEIVLAGMRSQELRAQIS---------NLDEIFEGVIDILKNLSSYPRGLKVGIKAL  266 (418)
Q Consensus       197 i~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~---------~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL  266 (418)
                      ++.+...| ++|...+...++++++.|   ..+|+.|..++         ...|++..|++.++.+. +|.....++.+|
T Consensus       191 l~Li~~~l~~~gk~~~VRel~~a~r~l---~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~-dp~~L~~l~~tl  266 (461)
T KOG4199|consen  191 LELILQVLNREGKTRTVRELYDAIRAL---LTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGI-DPDSLVSLSTTL  266 (461)
T ss_pred             HHHHHHHHcccCccHHHHHHHHHHHHh---cCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccC-CccHHHHHHHHH
Confidence            99999766 456667888899999999   67776665443         22578999999999987 799999999999


Q ss_pred             HHHccccccHHHHHHcCchHHHHHHhcC-CCc---ccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc--CChH
Q 014817          267 FALCLVKQTRYKAVAAGAAETLVDRLAD-FDK---CDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK--ISDR  340 (418)
Q Consensus       267 ~~L~~~~~n~~~i~~~G~v~~Lv~lL~~-~~~---~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~--~~~~  340 (418)
                      ..|+..++.+..+.+.|++..|++++.+ ++.   .+...++.+|+.|++++.++..|++. |+.+.++.++..  .++.
T Consensus       267 ~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~-gg~~~ii~l~~~h~~~p~  345 (461)
T KOG4199|consen  267 KALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEK-GGLDKIITLALRHSDDPL  345 (461)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHh-cChHHHHHHHHHcCCChH
Confidence            9999999999999999999999999986 333   35578999999999999999999995 999999999976  7999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCC-CHHHHHHHHHHHHHHHhhCCCCC
Q 014817          341 ATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDC-TDRAKRKAQLLLKLLRDSWPQDS  403 (418)
Q Consensus       341 ~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~~A~~~L~~l~~~~~~~~  403 (418)
                      +-+.++.++.-||-++|+....+++.|+-...++.+..++ ...++++|++++||+..+++.++
T Consensus       346 Vi~~~~a~i~~l~LR~pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~  409 (461)
T KOG4199|consen  346 VIQEVMAIISILCLRSPDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENR  409 (461)
T ss_pred             HHHHHHHHHHHHHhcCcchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            9999999999999999999999999999999999997653 46689999999999999988664

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.85  E-value=7.8e-22  Score=144.35  Aligned_cols=72  Identities=47%  Similarity=0.940  Sum_probs=63.3

Q ss_pred             CCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817           14 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR   85 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~   85 (418)
                      +|++|+||||+++|+|||++++||||||.+|++|+.++..+||.|++++...++.||..|++.|+.|+.+|.
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~~   72 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAENK   72 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHCT
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHcc
Confidence            689999999999999999999999999999999999888999999999999999999999999999999874

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.84  E-value=1.1e-18  Score=157.36  Aligned_cols=281  Identities=14%  Similarity=0.168  Sum_probs=233.2

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      ...-+|+.|....++.+-....+..++..|..++.||+.|++.|+.+.+...|....      ...+.+.+.++++.|..
T Consensus       146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~~il~Li~~~l~~~g------k~~~VRel~~a~r~l~~  219 (461)
T KOG4199|consen  146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMELKILELILQVLNREG------KTRTVRELYDAIRALLT  219 (461)
T ss_pred             cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHcccC------ccHHHHHHHHHHHHhcC
Confidence            345567777554444444467888899999999999999999999999998887663      23567778888888877


Q ss_pred             Chh---------HHHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC
Q 014817          183 TET---------ECMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL  252 (418)
Q Consensus       183 ~~~---------~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~  252 (418)
                      +++         ...+.|++.|++..|++.|+-+ ++.+...++.+|..|   +..++.+..|.+ .|++..|++++.+.
T Consensus       220 dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~l---AVr~E~C~~I~e-~GGl~tl~~~i~d~  295 (461)
T KOG4199|consen  220 DDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKAL---AVRDEICKSIAE-SGGLDTLLRCIDDS  295 (461)
T ss_pred             CCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHH---HHHHHHHHHHHH-ccCHHHHHHHHhhh
Confidence            762         2355677788999999999876 688889999999999   899999999976 79999999999985


Q ss_pred             CCCh---hhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc--CCCcccHHHHHHHHHHHh-cCHhHHHHHHhccCC
Q 014817          253 SSYP---RGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA--DFDKCDAERALATVELLC-RIPAGCAEFAEHALT  326 (418)
Q Consensus       253 ~~~~---~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~  326 (418)
                      . +.   ...+.+++.|+.|+.+++++..|++.|+.+.++.++.  +.++.+.+.++.++..|+ +.++...++++ +|+
T Consensus       296 n-~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~ie-~G~  373 (461)
T KOG4199|consen  296 N-EQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAIE-AGA  373 (461)
T ss_pred             c-hhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHHh-cch
Confidence            2 23   3557899999999999999999999999999999885  457788899999999999 77888899999 599


Q ss_pred             hHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          327 VPLLVKTILK--ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       327 i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      -...|+.|+.  ....+|++|++.+.||+.++.+++..++..|+ ++|+.....+ ++..+..|..+||.|--
T Consensus       374 a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~Gi-E~Li~~A~~~-h~tce~~akaALRDLGc  444 (461)
T KOG4199|consen  374 ADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLANGI-EKLIRTAKAN-HETCEAAAKAALRDLGC  444 (461)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhccH-HHHHHHHHhc-CccHHHHHHHHHHhcCc
Confidence            9999999988  56678999999999999988888887666655 7777777777 88888899999998754

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.83  E-value=2.5e-18  Score=175.24  Aligned_cols=253  Identities=16%  Similarity=0.132  Sum_probs=216.8

Q ss_pred             HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHH
Q 014817          122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLS  201 (418)
Q Consensus       122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv  201 (418)
                      ..++..|.+++. +..+...+++.|+++.|+++|.+.       +.+++..++..|.+|+... +|+..+.+.|+++.|+
T Consensus       267 rv~~~lLlNLAe-d~~ve~kM~~~~iV~~Lv~~Ldr~-------n~ellil~v~fLkkLSi~~-ENK~~m~~~giV~kL~  337 (708)
T PF05804_consen  267 RVAFYLLLNLAE-DPRVELKMVNKGIVSLLVKCLDRE-------NEELLILAVTFLKKLSIFK-ENKDEMAESGIVEKLL  337 (708)
T ss_pred             HHHHHHHHHHhc-ChHHHHHHHhcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHcCCH-HHHHHHHHcCCHHHHH
Confidence            345666778874 578888899999999999999877       6889999999999999998 7999999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH
Q 014817          202 SLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA  281 (418)
Q Consensus       202 ~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~  281 (418)
                      +++.+++.+.+..++++|.||   +.++++|..+.. .|++|.|+.+|.++    ..+..++.+|++||..+++|..+..
T Consensus       338 kLl~s~~~~l~~~aLrlL~NL---Sfd~~~R~~mV~-~GlIPkLv~LL~d~----~~~~val~iLy~LS~dd~~r~~f~~  409 (708)
T PF05804_consen  338 KLLPSENEDLVNVALRLLFNL---SFDPELRSQMVS-LGLIPKLVELLKDP----NFREVALKILYNLSMDDEARSMFAY  409 (708)
T ss_pred             HHhcCCCHHHHHHHHHHHHHh---CcCHHHHHHHHH-CCCcHHHHHHhCCC----chHHHHHHHHHHhccCHhhHHHHhh
Confidence            999999999999999999999   999999999976 79999999999865    3556799999999999999999999


Q ss_pred             cCchHHHHHHhcC-CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH
Q 014817          282 AGAAETLVDRLAD-FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ  360 (418)
Q Consensus       282 ~G~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~  360 (418)
                      .+++|.++++|.+ ++..+...++.++.||+.++.+.+.+.+. |+++.|++...+...   .-.++.+.||+.+++..+
T Consensus       410 TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~rnaqlm~~g-~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~~k  485 (708)
T PF05804_consen  410 TDCIPQLMQMLLENSEEEVQLELIALLINLALNKRNAQLMCEG-NGLQSLMKRALKTRD---PLLLKLIRNISQHDGPLK  485 (708)
T ss_pred             cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHHHHHHHHhc-CcHHHHHHHHHhccc---HHHHHHHHHHHhcCchHH
Confidence            9999999998765 45667778899999999999999999985 899999998766332   234578999999775555


Q ss_pred             HHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          361 RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       361 ~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      ..+.  +.+..|+.++..+.++...-.+.++|.||..
T Consensus       486 ~~f~--~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~  520 (708)
T PF05804_consen  486 ELFV--DFIGDLAKIVSSGDSEEFVVECLGILANLTI  520 (708)
T ss_pred             HHHH--HHHHHHHHHhhcCCcHHHHHHHHHHHHhccc
Confidence            5443  5888999998776578888888888888875

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.83  E-value=2.3e-19  Score=185.66  Aligned_cols=272  Identities=15%  Similarity=0.103  Sum_probs=230.8

Q ss_pred             HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhccccccc-----CCChhHHHHHHHHHhcCCCChhHHHhhcc-cCC
Q 014817          122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKT-----ASSPELAHESLALLVMFPLTETECMEIAS-DAD  195 (418)
Q Consensus       122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~-----~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g  195 (418)
                      ..|+..|.++.- ++++|..|-+.|++..+..||.-+.+.-+     ..+..++..|+.+|.||.+++..||..+. ..|
T Consensus       316 caA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~LCs~rg  394 (2195)
T KOG2122|consen  316 CAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATLCSQRG  394 (2195)
T ss_pred             HHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhhhhhhh
Confidence            478888888864 68999999999999999998853322111     01355789999999999999988999998 579


Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHh-hcCCCChhhhHHHHHHHHHHccc-c
Q 014817          196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDIL-KNLSSYPRGLKVGIKALFALCLV-K  273 (418)
Q Consensus       196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~a~~aL~~L~~~-~  273 (418)
                      +++.+|..|.+...++....+.+|+||+  =..|.+-..+....|-+..|+... +..  .+...++.+.|||||+.+ .
T Consensus       395 fMeavVAQL~s~peeL~QV~AsvLRNLS--WRAD~nmKkvLrE~GsVtaLa~~al~~~--kEsTLKavLSALWNLSAHct  470 (2195)
T KOG2122|consen  395 FMEAVVAQLISAPEELLQVYASVLRNLS--WRADSNMKKVLRETGSVTALAACALRNK--KESTLKAVLSALWNLSAHCT  470 (2195)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHHhcc--ccccccHHHHHHhhhhHHHHHHHHHHhc--ccchHHHHHHHHhhhhhccc
Confidence            9999999999999999999999999994  345555555545578888888864 444  678999999999999976 5


Q ss_pred             ccHHHHHH-cCchHHHHHHhcC----CCcccHHHHHHHHHHHh----cCHhHHHHHHhccCChHHHHHHHhcCChHHHHH
Q 014817          274 QTRYKAVA-AGAAETLVDRLAD----FDKCDAERALATVELLC----RIPAGCAEFAEHALTVPLLVKTILKISDRATEY  344 (418)
Q Consensus       274 ~n~~~i~~-~G~v~~Lv~lL~~----~~~~~~~~a~~~L~~L~----~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~  344 (418)
                      +|+..|+. -|++..||.+|.-    ....+.+.+-++|+|.+    .++..|+.+.++ .++..|++.|++.+..+-.+
T Consensus       471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~-NCLq~LLQ~LKS~SLTiVSN  549 (2195)
T KOG2122|consen  471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRH-NCLQTLLQHLKSHSLTIVSN  549 (2195)
T ss_pred             ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHh-hHHHHHHHHhhhcceEEeec
Confidence            79999998 6999999999963    24578899999998766    577889999997 99999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          345 AAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       345 A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ++++||||..++++-++.+++.|++..|..|+++. +..+-+-++..|+||-.+..
T Consensus       550 aCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~RP  604 (2195)
T KOG2122|consen  550 ACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFRP  604 (2195)
T ss_pred             chhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999877 88899999999999999873

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.81  E-value=7.6e-18  Score=171.72  Aligned_cols=218  Identities=17%  Similarity=0.142  Sum_probs=193.2

Q ss_pred             hhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHH
Q 014817          167 PELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVI  246 (418)
Q Consensus       167 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv  246 (418)
                      ..+...+..+|.||+.+. .....+.+.|+++.|+++|.+++.+....++.+|.+|   +...+|+..|+. .|+|++|+
T Consensus       263 eqLlrv~~~lLlNLAed~-~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkL---Si~~ENK~~m~~-~giV~kL~  337 (708)
T PF05804_consen  263 EQLLRVAFYLLLNLAEDP-RVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKL---SIFKENKDEMAE-SGIVEKLL  337 (708)
T ss_pred             HHHHHHHHHHHHHHhcCh-HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHH---cCCHHHHHHHHH-cCCHHHHH
Confidence            356778888999999887 7888889999999999999999999999999999999   899999999976 79999999


Q ss_pred             HHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCC
Q 014817          247 DILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALT  326 (418)
Q Consensus       247 ~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~  326 (418)
                      +++.++  +...+..++++|+|||.+.++|..|++.|++|.|+.+|.++  ..+..++.+|.+|+..+++|..+... ++
T Consensus       338 kLl~s~--~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~T-dc  412 (708)
T PF05804_consen  338 KLLPSE--NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYT-DC  412 (708)
T ss_pred             HHhcCC--CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhc-ch
Confidence            999998  88999999999999999999999999999999999999863  45677999999999999999988885 89


Q ss_pred             hHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          327 VPLLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       327 i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ++.+++++.. ++..++..++.++.|++. ++++.+.|.+.|+++.|+.......++    ...+++||++.|.
T Consensus       413 Ip~L~~~Ll~~~~~~v~~eliaL~iNLa~-~~rnaqlm~~g~gL~~L~~ra~~~~D~----lLlKlIRNiS~h~  481 (708)
T PF05804_consen  413 IPQLMQMLLENSEEEVQLELIALLINLAL-NKRNAQLMCEGNGLQSLMKRALKTRDP----LLLKLIRNISQHD  481 (708)
T ss_pred             HHHHHHHHHhCCCccccHHHHHHHHHHhc-CHHHHHHHHhcCcHHHHHHHHHhcccH----HHHHHHHHHHhcC
Confidence            9999998876 566677788999999999 778889999999999999888665332    2346888888885

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.78  E-value=8e-18  Score=167.92  Aligned_cols=284  Identities=17%  Similarity=0.125  Sum_probs=228.4

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      .++++.+.+|.+..+..+  ..|...+..+|.++...|..+.+.|+|+.|+.+|...       +.+|+.+|+++|.||.
T Consensus       233 ~~lpe~i~mL~~q~~~~q--snaaaylQHlcfgd~~ik~~vrqlggI~kLv~Ll~~~-------~~evq~~acgaLRNLv  303 (717)
T KOG1048|consen  233 PTLPEVISMLMSQDPSVQ--SNAAAYLQHLCFGDNKIKSRVRQLGGIPKLVALLDHR-------NDEVQRQACGALRNLV  303 (717)
T ss_pred             cccHHHHHHHhccChhhh--HHHHHHHHHHHhhhHHHHHHHHHhccHHHHHHHhcCC-------cHHHHHHHHHHHHhhh
Confidence            457888999998765544  7799999999999999999999999999999999888       6899999999999999


Q ss_pred             CChhH--HHhhcccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC----
Q 014817          182 LTETE--CMEIASDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS----  254 (418)
Q Consensus       182 ~~~~~--~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~----  254 (418)
                      .+...  |+-.|.+.++|+.++++|+. ++.++++..+.+|+||   +.+|..|..|..  .+++.|.+-+-.+-+    
T Consensus       304 f~~~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNL---SS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~  378 (717)
T KOG1048|consen  304 FGKSTDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNL---SSNDALKMLIIT--SALSTLTDNVIIPHSGWEE  378 (717)
T ss_pred             cccCCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcc---cchhHHHHHHHH--HHHHHHHHhhcccccccCC
Confidence            87654  89999999999999999986 7999999999999999   788999998864  378888876543210    


Q ss_pred             --------ChhhhHHHHHHHHHHcc-ccccHHHHHH-cCchHHHHHHhc------CCCcccHHHHHHHHHHHhcCHh---
Q 014817          255 --------YPRGLKVGIKALFALCL-VKQTRYKAVA-AGAAETLVDRLA------DFDKCDAERALATVELLCRIPA---  315 (418)
Q Consensus       255 --------~~~~~~~a~~aL~~L~~-~~~n~~~i~~-~G~v~~Lv~lL~------~~~~~~~~~a~~~L~~L~~~~~---  315 (418)
                              +..+..++..+|+|+++ ..+.|.+|-+ .|.|..|+..++      ..+...+++++.+|+||+-.-+   
T Consensus       379 ~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Ev  458 (717)
T KOG1048|consen  379 EPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEV  458 (717)
T ss_pred             CCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhc
Confidence                    25678899999999997 5778999977 799999999886      3467788999999999982111   


Q ss_pred             ---H--------------------------HHHHHh---------------------ccCChHHHHHHHh-cCChHHHHH
Q 014817          316 ---G--------------------------CAEFAE---------------------HALTVPLLVKTIL-KISDRATEY  344 (418)
Q Consensus       316 ---~--------------------------~~~i~~---------------------~~g~i~~Lv~~l~-~~~~~~~~~  344 (418)
                         .                          +.+..+                     +.-+|..-..+|. ..++...|.
T Consensus       459 p~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEa  538 (717)
T KOG1048|consen  459 PPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEA  538 (717)
T ss_pred             CHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHH
Confidence               0                          011000                     0012333333443 368889999


Q ss_pred             HHHHHHHHhcCC----HHHHHHH-HhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          345 AAGALAALCSAS----ERCQRDA-VSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       345 A~~~L~~l~~~~----~~~~~~~-~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ++++|.|++.+.    ...+..+ .++.+.+.|+++|+.+ ++.+.+.++.+|+||+....
T Consensus       539 saGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~d~r  598 (717)
T KOG1048|consen  539 SAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSRDIR  598 (717)
T ss_pred             hhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhccCch
Confidence            999999999943    3455556 7789999999999888 99999999999999998654

>smart00504 Ubox Modified RING finger domain

Probab=99.71  E-value=1.1e-17  Score=119.50  Aligned_cols=63  Identities=54%  Similarity=0.939  Sum_probs=59.9

Q ss_pred             cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 014817           17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDW   80 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~   80 (418)
                      +|.||||+++|+|||+++|||+|||.||.+|+.+ ..+||.|+++++..++.+|..+++.|+.|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            5789999999999999999999999999999987 77899999999999999999999999987

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.70  E-value=6.8e-16  Score=154.24  Aligned_cols=284  Identities=15%  Similarity=0.122  Sum_probs=229.2

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChh--hhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDK--NRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~--~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      +.|.+||..|.....+.  +..|.++|++|..++..  |+..|.+.|+|+.++++|+...      |.++++....+|.|
T Consensus       275 ggI~kLv~Ll~~~~~ev--q~~acgaLRNLvf~~~~~~NKlai~~~~Gv~~l~~~Lr~t~------D~ev~e~iTg~LWN  346 (717)
T KOG1048|consen  275 GGIPKLVALLDHRNDEV--QRQACGALRNLVFGKSTDSNKLAIKELNGVPTLVRLLRHTQ------DDEVRELITGILWN  346 (717)
T ss_pred             ccHHHHHHHhcCCcHHH--HHHHHHHHHhhhcccCCcccchhhhhcCChHHHHHHHHhhc------chHHHHHHHHHHhc
Confidence            45788999998876544  58899999999876555  9999999999999999998753      57999999999999


Q ss_pred             CCCChhHHHhhcccCCchHHHHHHhc---C-----------CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817          180 FPLTETECMEIASDADKITSLSSLLF---H-----------SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV  245 (418)
Q Consensus       180 l~~~~~~~~~~i~~~g~i~~Lv~~L~---~-----------~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L  245 (418)
                      |+..+ ..+..++.. ++..|..-+-   +           .+.++..+++..|+|++  +..++.++.+.+..|.|..|
T Consensus       347 LSS~D-~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlS--s~~~eaR~~mr~c~GLIdaL  422 (717)
T KOG1048|consen  347 LSSND-ALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLS--SAGQEAREQMRECDGLIDAL  422 (717)
T ss_pred             ccchh-HHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhcccc--chhHHHHHHHhhccchHHHH
Confidence            99875 666666543 3444443221   1           12566789999999996  67999999999888999999


Q ss_pred             HHHhhcCC----C-------------------------------------------------------------------
Q 014817          246 IDILKNLS----S-------------------------------------------------------------------  254 (418)
Q Consensus       246 v~lL~~~~----~-------------------------------------------------------------------  254 (418)
                      +..+++..    .                                                                   
T Consensus       423 ~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~p  502 (717)
T KOG1048|consen  423 LFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIP  502 (717)
T ss_pred             HHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccCCc
Confidence            98876200    0                                                                   


Q ss_pred             -----------------------------ChhhhHHHHHHHHHHccccc-----cHHHH-HHcCchHHHHHHhcCCCccc
Q 014817          255 -----------------------------YPRGLKVGIKALFALCLVKQ-----TRYKA-VAAGAAETLVDRLADFDKCD  299 (418)
Q Consensus       255 -----------------------------~~~~~~~a~~aL~~L~~~~~-----n~~~i-~~~G~v~~Lv~lL~~~~~~~  299 (418)
                                                   +..+.++++.+|-||+...-     .+..+ ....++|+|+++|..++..+
T Consensus       503 e~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~v  582 (717)
T KOG1048|consen  503 ERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDV  582 (717)
T ss_pred             ccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchH
Confidence                                         34567777778888875442     34444 45778999999999999999


Q ss_pred             HHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcC------ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHH
Q 014817          300 AERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI------SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLL  373 (418)
Q Consensus       300 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~------~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~  373 (418)
                      +..++.+|.||+.+..+++.|..  ++++-||..|-..      +.+.-..++.+|++|...+......+.+.+++++|+
T Consensus       583 v~s~a~~LrNls~d~rnk~ligk--~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~~kL~  660 (717)
T KOG1048|consen  583 VRSAAGALRNLSRDIRNKELIGK--YAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGIPKLR  660 (717)
T ss_pred             HHHHHHHHhhhccCchhhhhhhc--chHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccChHHHH
Confidence            99999999999999999999984  7899999999763      256778899999999988999999999999999999


Q ss_pred             HHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          374 LLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       374 ~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      .+..+.-+++.-+.|..+|..|-.+.
T Consensus       661 ~I~~s~~S~k~~kaAs~vL~~lW~y~  686 (717)
T KOG1048|consen  661 LISKSQHSPKEFKAASSVLDVLWQYK  686 (717)
T ss_pred             HHhcccCCHHHHHHHHHHHHHHHHHH
Confidence            98877658899999999999887754

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.69  E-value=6.5e-15  Score=133.94  Aligned_cols=197  Identities=14%  Similarity=0.048  Sum_probs=172.8

Q ss_pred             HhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHH
Q 014817          142 ISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEI  221 (418)
Q Consensus       142 i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~  221 (418)
                      +.+.+-++.|+.+|....      ++.+++.|+.+|.+.+... .++..+.+.|+++.+..+|..+++.++..|+++|.|
T Consensus         8 ~l~~~~l~~Ll~lL~~t~------dp~i~e~al~al~n~aaf~-~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N   80 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTE------DPFIQEKALIALGNSAAFP-FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNN   80 (254)
T ss_pred             CcCHHHHHHHHHHHhcCC------ChHHHHHHHHHHHhhccCh-hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHh
Confidence            456778899999998764      6899999999999998777 899999999999999999999999999999999999


Q ss_pred             HHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHH
Q 014817          222 VLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAE  301 (418)
Q Consensus       222 L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~  301 (418)
                      +   +.+.++...|-   ..++.+.+.+.+...+..++.+++++|.||+..++....+.  +.++.++++|.+++..++.
T Consensus        81 l---s~~~en~~~Ik---~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~  152 (254)
T PF04826_consen   81 L---SVNDENQEQIK---MYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKV  152 (254)
T ss_pred             c---CCChhhHHHHH---HHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHH
Confidence            9   89999999883   25777777655543377899999999999998888877764  4799999999999999999


Q ss_pred             HHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhc
Q 014817          302 RALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCS  354 (418)
Q Consensus       302 ~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~  354 (418)
                      .++++|.+|+.++.....+... +++..++.++.. .+..+...++....||..
T Consensus       153 ~vLk~L~nLS~np~~~~~Ll~~-q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  153 QVLKVLVNLSENPDMTRELLSA-QVLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             HHHHHHHHhccCHHHHHHHHhc-cchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            9999999999999998888884 899999998876 477888999999999966

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.61  E-value=6.6e-14  Score=127.37  Aligned_cols=200  Identities=13%  Similarity=0.078  Sum_probs=176.2

Q ss_pred             ccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHc
Q 014817          192 SDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALC  270 (418)
Q Consensus       192 ~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~  270 (418)
                      .+++-++.|+.+|+. .++.+++.+..++.+.   +..+.++..|.. .|+++.+..+|.++  ++.++..|+++|.|++
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~---aaf~~nq~~Ir~-~Ggi~lI~~lL~~p--~~~vr~~AL~aL~Nls   82 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNS---AAFPFNQDIIRD-LGGISLIGSLLNDP--NPSVREKALNALNNLS   82 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhh---ccChhHHHHHHH-cCCHHHHHHHcCCC--ChHHHHHHHHHHHhcC
Confidence            577889999999985 4799999999999999   888999999976 79999999999998  8999999999999999


Q ss_pred             cccccHHHHHHcCchHHHHHHhcCC--CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHH
Q 014817          271 LVKQTRYKAVAAGAAETLVDRLADF--DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGA  348 (418)
Q Consensus       271 ~~~~n~~~i~~~G~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~  348 (418)
                      .+.+|+..+-.  .++.+.+.+.+.  +..++..++.+|.+|+..++.+..+.   +.++.++.++..++..++.+++++
T Consensus        83 ~~~en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~  157 (254)
T PF04826_consen   83 VNDENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKV  157 (254)
T ss_pred             CChhhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHH
Confidence            99999988743  577777766543  56788899999999998888777764   459999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCCCC
Q 014817          349 LAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDS  403 (418)
Q Consensus       349 L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~  403 (418)
                      |.||+. ++.....++.++++..++.+++...+...-..+..+..|+..++....
T Consensus       158 L~nLS~-np~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~  211 (254)
T PF04826_consen  158 LVNLSE-NPDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEA  211 (254)
T ss_pred             HHHhcc-CHHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCccc
Confidence            999999 888889999999999999999877678888899999999999887543

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.53  E-value=1.1e-12  Score=122.58  Aligned_cols=291  Identities=13%  Similarity=0.065  Sum_probs=222.4

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +.++.|.+...|++.+.  -.+.-++|.+.|..+.++|..+.+.||-..++++|+.-.....+.+++....+...|.|..
T Consensus        87 ~~le~Lrq~psS~d~ev--~~Q~~RaLgNiCydn~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~  164 (604)
T KOG4500|consen   87 EALELLRQTPSSPDTEV--HEQCFRALGNICYDNNENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYI  164 (604)
T ss_pred             HHHHHHHhCCCCCcccH--HHHHHHHHhhhhccCchhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHHhh
Confidence            34555555555553333  3667899999999999999999999998888888864322111235677777888999998


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817          182 LTETECMEIASDADKITSLSSLLFHS--SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      .+.++.+.++++.|+++.|+.++.-+  +....+.......||.  +...++-..+..+......|++++.... .++..
T Consensus       165 l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nll--s~~~e~~~~~~~d~sl~~~l~~ll~~~v-~~d~~  241 (604)
T KOG4500|consen  165 LDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLL--SFVCEMLYPFCKDCSLVFMLLQLLPSMV-REDID  241 (604)
T ss_pred             CCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHH--HHHHHhhhhhhccchHHHHHHHHHHHhh-ccchh
Confidence            88888999999999999999988654  5666677777777775  3333333333333567888999998765 78899


Q ss_pred             HHHHHHHHHHccccccHHHHHHcCchHHHHHHhcC-CCc-------ccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHH
Q 014817          260 KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLAD-FDK-------CDAERALATVELLCRIPAGCAEFAEHALTVPLLV  331 (418)
Q Consensus       260 ~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~-~~~-------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv  331 (418)
                      +.....|...+.++..+-.+++.|.+..++++++. .+-       .....++.....|...++.-+++...+..+..++
T Consensus       242 eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~  321 (604)
T KOG4500|consen  242 EMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLE  321 (604)
T ss_pred             hHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHH
Confidence            99999999999999999999999999999999975 222       2223344445555567777778877544888899


Q ss_pred             HHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhh----CCCHHHHHHHHHHHHHHHhh
Q 014817          332 KTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQS----DCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       332 ~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~----~~~~~~~~~A~~~L~~l~~~  398 (418)
                      .++.+.+...+..+.-++.|+++++. ....+++.|.+.+|++.|..    +++-+.+.++..+||||.--
T Consensus       322 sw~~S~d~~l~t~g~LaigNfaR~D~-~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IP  391 (604)
T KOG4500|consen  322 SWFRSDDSNLITMGSLAIGNFARRDD-ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIP  391 (604)
T ss_pred             HHhcCCchhHHHHHHHHHHhhhccch-HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhcccc
Confidence            99988888999999999999999554 45558899999999999954    45788999999999999753

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.49  E-value=3.7e-13  Score=140.47  Aligned_cols=225  Identities=16%  Similarity=0.094  Sum_probs=191.1

Q ss_pred             hhHHHHHHHHHhhhcChhhhhHHhh-cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHH-HhhcccCCch
Q 014817          120 SRLSALRRLRGLARDSDKNRSLISS-HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETEC-MEIASDADKI  197 (418)
Q Consensus       120 ~~~~Al~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~-~~~i~~~g~i  197 (418)
                      .|.+|+-+|.+|..++..||..+.. .|+++.+|.-|.+.       ..+++-..+.+|+||++..+.+ ++.+.+.|-+
T Consensus       367 LRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s~-------peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsV  439 (2195)
T KOG2122|consen  367 LRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLISA-------PEELLQVYASVLRNLSWRADSNMKKVLRETGSV  439 (2195)
T ss_pred             HHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhcC-------hHHHHHHHHHHHHhccccccccHHHHHHhhhhH
Confidence            3677888999999988889988765 69999999999877       3567777778999999987554 6666688989


Q ss_pred             HHHHHH-hcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC--CCChhhhHHHHHHHHHHcc---
Q 014817          198 TSLSSL-LFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL--SSYPRGLKVGIKALFALCL---  271 (418)
Q Consensus       198 ~~Lv~~-L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~~~a~~aL~~L~~---  271 (418)
                      ..|+.. |+..........+.+||||+  +...+||..|....|++..||.+|...  .....+.+.|-+.|+|.++   
T Consensus       440 taLa~~al~~~kEsTLKavLSALWNLS--AHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IA  517 (2195)
T KOG2122|consen  440 TALAACALRNKKESTLKAVLSALWNLS--AHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIA  517 (2195)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHhhhh--hcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhh
Confidence            888874 45556677788899999997  778899999988899999999999754  2135678899999999875   


Q ss_pred             -ccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHH
Q 014817          272 -VKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGAL  349 (418)
Q Consensus       272 -~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L  349 (418)
                       +.+.|..+.+.+.+..|++.|.+..--++.+++++|+||+ .+++.++.+.++ |+|+.|..++.+.+..+-+-++.+|
T Consensus       518 t~E~yRQILR~~NCLq~LLQ~LKS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~-gAv~mLrnLIhSKhkMIa~GSaaAL  596 (2195)
T KOG2122|consen  518 TCEDYRQILRRHNCLQTLLQHLKSHSLTIVSNACGTLWNLSARSPEDQQMLWDD-GAVPMLRNLIHSKHKMIAMGSAAAL  596 (2195)
T ss_pred             ccchHHHHHHHhhHHHHHHHHhhhcceEEeecchhhhhhhhcCCHHHHHHHHhc-ccHHHHHHHHhhhhhhhhhhHHHHH
Confidence             4556777788999999999999988889999999999998 678899999996 9999999999999999999999999


Q ss_pred             HHHhc
Q 014817          350 AALCS  354 (418)
Q Consensus       350 ~~l~~  354 (418)
                      .|+-.
T Consensus       597 rNLln  601 (2195)
T KOG2122|consen  597 RNLLN  601 (2195)
T ss_pred             HHHhc
Confidence            99877

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.41  E-value=2.1e-10  Score=115.83  Aligned_cols=278  Identities=17%  Similarity=0.129  Sum_probs=211.2

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      ..+.|...|..+++.  -+.-+++.|.++...++.....+.+.+.++.++.+|.++       +.++.+.|..+|..++.
T Consensus        78 ~~~~L~~gL~h~~~~--Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~-------d~~Va~~A~~~L~~l~~  148 (503)
T PF10508_consen   78 YQPFLQRGLTHPSPK--VRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP-------DLSVAKAAIKALKKLAS  148 (503)
T ss_pred             HHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC-------cHHHHHHHHHHHHHHhC
Confidence            345566666666543  357789999999888777777788899999999999887       57899999999999998


Q ss_pred             ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817          183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG  262 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a  262 (418)
                      .. ...+.+...+.+..|..++...+..+|..+..++.+++  +..++....+.. .|+++.++..|+++  |.-++.++
T Consensus       149 ~~-~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~--~~S~~~~~~~~~-sgll~~ll~eL~~d--DiLvqlna  222 (503)
T PF10508_consen  149 HP-EGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIA--SHSPEAAEAVVN-SGLLDLLLKELDSD--DILVQLNA  222 (503)
T ss_pred             Cc-hhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHH--hcCHHHHHHHHh-ccHHHHHHHHhcCc--cHHHHHHH
Confidence            76 55666778888999999998888899999999999995  566666666654 79999999999997  89999999


Q ss_pred             HHHHHHHccccccHHHHHHcCchHHHHHHhcCC--Cc---c-cHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHh
Q 014817          263 IKALFALCLVKQTRYKAVAAGAAETLVDRLADF--DK---C-DAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTIL  335 (418)
Q Consensus       263 ~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~--~~---~-~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~  335 (418)
                      +..|..|+..+.+...+.+.|+++.|..++.+.  ++   . ..-..+....+++.. +...  .......+..+...+.
T Consensus       223 lell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v--~~~~p~~~~~l~~~~~  300 (503)
T PF10508_consen  223 LELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEV--LELYPAFLERLFSMLE  300 (503)
T ss_pred             HHHHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHH--HHHHHHHHHHHHHHhC
Confidence            999999999888999999999999999999743  22   1 223344666667763 2211  1111234445555556


Q ss_pred             cCChHHHHHHHHHHHHHhcCCHHHHHHH-Hh-cChHHHHHHHHh---hCCCHHHHHHHHHHHHHHHhh
Q 014817          336 KISDRATEYAAGALAALCSASERCQRDA-VS-AGVLTQLLLLVQ---SDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       336 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~-~~-~g~i~~L~~ll~---~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +.+...+..|..++..|+. +.+-+..+ .. .+.++..+..+.   ..++..+|-.+...|.++-..
T Consensus       301 s~d~~~~~~A~dtlg~igs-t~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~  367 (503)
T PF10508_consen  301 SQDPTIREVAFDTLGQIGS-TVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS  367 (503)
T ss_pred             CCChhHHHHHHHHHHHHhC-CHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence            6889999999999999997 55655555 33 345555555543   233678888888888888544

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.41  E-value=6.1e-11  Score=111.05  Aligned_cols=270  Identities=12%  Similarity=0.067  Sum_probs=208.7

Q ss_pred             HHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcc-cccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHH
Q 014817          125 LRRLRGLARDSDKNRSLISSHNVRAILSQVFFTN-INVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSL  203 (418)
Q Consensus       125 l~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~  203 (418)
                      ...+...+ +++..+-.+++.|.++.+++++..- +..+..........+......|..+++..+.....+.++..++..
T Consensus       245 feila~~a-end~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw  323 (604)
T KOG4500|consen  245 FEILAKAA-ENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESW  323 (604)
T ss_pred             HHHHHHHh-cCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHH
Confidence            44444444 6778899999999999999999752 111100012233445555566667774555555555599999999


Q ss_pred             hcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC---CCChhhhHHHHHHHHHHccccccHHHHH
Q 014817          204 LFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL---SSYPRGLKVGIKALFALCLVKQTRYKAV  280 (418)
Q Consensus       204 L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~~a~~aL~~L~~~~~n~~~i~  280 (418)
                      +++.+.+....++-+|.|+   +..|+++..++. .|.++.|+.+|...   .++.+.+.+++.||+||.....|+..++
T Consensus       324 ~~S~d~~l~t~g~LaigNf---aR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~  399 (604)
T KOG4500|consen  324 FRSDDSNLITMGSLAIGNF---ARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFA  399 (604)
T ss_pred             hcCCchhHHHHHHHHHHhh---hccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhcc
Confidence            9999999999999999999   899999999976 78999999998651   1267889999999999999999999999


Q ss_pred             HcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHh-HHHHHHhccCChHHHHHHHhcCChH-HHHHHHHHHHHHhcC--C
Q 014817          281 AAGAAETLVDRLADFDKCDAERALATVELLCRIPA-GCAEFAEHALTVPLLVKTILKISDR-ATEYAAGALAALCSA--S  356 (418)
Q Consensus       281 ~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~~~~-~~~~A~~~L~~l~~~--~  356 (418)
                      .+|++++++..+....+.++-.-++.|+.+....+ ...++..+...+..||.+-++++.. +.....+.|..+-++  .
T Consensus       400 ~aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~  479 (604)
T KOG4500|consen  400 PAGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKY  479 (604)
T ss_pred             ccchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHh
Confidence            99999999999998889999999999998886665 4455555555677777777665444 677777888777774  5


Q ss_pred             HHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          357 ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       357 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ......+.+.|+++.++..+.+. +-..+..|.-+|-.+...+-
T Consensus       480 kdv~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~~~~yl  522 (604)
T KOG4500|consen  480 KDVILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLSTESKYL  522 (604)
T ss_pred             hhhHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHHHHHhc
Confidence            56777888999999999999777 77777777777777766543

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.40  E-value=9.8e-12  Score=100.58  Aligned_cols=118  Identities=21%  Similarity=0.194  Sum_probs=108.9

Q ss_pred             HHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 014817          278 KAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS  356 (418)
Q Consensus       278 ~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~  356 (418)
                      .+++.|+++.|+++|.+++..++..++.+|.+++.. ++.+..+.+. |+++.++++|.+.++.++..|+++|.+|+...
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEA-GGLPALVQLLKSEDEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHC-CChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence            467899999999999998889999999999999987 7888888885 99999999999999999999999999999977


Q ss_pred             HHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          357 ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       357 ~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      +.....+.+.|+++.|+.+++.. +...++.|.++|.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~~-~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDSS-NEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhcC-CHHHHHHHHHHHHHhhC
Confidence            78888889999999999999877 99999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.40  E-value=1.4e-13  Score=88.54  Aligned_cols=39  Identities=33%  Similarity=0.703  Sum_probs=31.1

Q ss_pred             CcCccccccCCeecCCCCcccHHHHHHHHHcCC---CCCCCC
Q 014817           20 CPISLELMCDPVTVCTGQTYDRPSIESWVATGN---TTCPVT   58 (418)
Q Consensus        20 Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~---~~cp~~   58 (418)
                      ||||+++|+|||+++|||+||+.||++||+...   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999997542   358876

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.34  E-value=2.9e-10  Score=114.72  Aligned_cols=250  Identities=18%  Similarity=0.105  Sum_probs=196.2

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      .+..+++.|....    .+.+++..+.......+.     .+..-.+.+...|.+.       +.+..+.++.+|..+..
T Consensus         4 ~~~~~l~~l~~~~----~~~~~L~~l~~~~~~~~~-----l~~~~~~~lf~~L~~~-------~~e~v~~~~~iL~~~l~   67 (503)
T PF10508_consen    4 WINELLEELSSKA----ERLEALPELKTELSSSPF-----LERLPEPVLFDCLNTS-------NREQVELICDILKRLLS   67 (503)
T ss_pred             HHHHHHHHHhccc----chHHHHHHHHHHHhhhhH-----HHhchHHHHHHHHhhc-------ChHHHHHHHHHHHHHHh
Confidence            3556677776652    246777777765443331     1122233377888766       35656777777776654


Q ss_pred             ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817          183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG  262 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a  262 (418)
                      .. .....  ..+..+.|...|.++++.+|..+++.|.++   ..+.+....+....++++.++.++.++  +..+.+.|
T Consensus        68 ~~-~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~---~~~~~~~~~~~~~~~l~~~i~~~L~~~--d~~Va~~A  139 (503)
T PF10508_consen   68 AL-SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRI---ARHSEGAAQLLVDNELLPLIIQCLRDP--DLSVAKAA  139 (503)
T ss_pred             cc-CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHH---hcCCHHHHHHhcCccHHHHHHHHHcCC--cHHHHHHH
Confidence            33 22222  567789999999999999999999999999   555555555555578999999999998  89999999


Q ss_pred             HHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817          263 IKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRA  341 (418)
Q Consensus       263 ~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~  341 (418)
                      ..+|.+|+.+......+.+.+.++.|..++..++..++-.+..++..++. +++....+.. .|.++.++..+.+++..+
T Consensus       140 ~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~dDiLv  218 (503)
T PF10508_consen  140 IKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDSDDILV  218 (503)
T ss_pred             HHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcCccHHH
Confidence            99999999998888888899999999999988777788889999999985 4566666666 599999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhh
Q 014817          342 TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQS  378 (418)
Q Consensus       342 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~  378 (418)
                      |.+|+.+|..|+. .+...+-+.+.|++++|..++..
T Consensus       219 qlnalell~~La~-~~~g~~yL~~~gi~~~L~~~l~~  254 (503)
T PF10508_consen  219 QLNALELLSELAE-TPHGLQYLEQQGIFDKLSNLLQD  254 (503)
T ss_pred             HHHHHHHHHHHHc-ChhHHHHHHhCCHHHHHHHHHhc
Confidence            9999999999999 77888889999999999999964

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.33  E-value=1.9e-11  Score=98.93  Aligned_cols=113  Identities=24%  Similarity=0.171  Sum_probs=102.8

Q ss_pred             hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH-hH
Q 014817          239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP-AG  316 (418)
Q Consensus       239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~  316 (418)
                      .|+++.|++++.++  +...+..++++|.+++.. ++.+..+++.|+++.++.+|.+++..++..++++|.+|+.+. ..
T Consensus         6 ~~~i~~l~~~l~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~   83 (120)
T cd00020           6 AGGLPALVSLLSSS--DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDN   83 (120)
T ss_pred             cCChHHHHHHHHcC--CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHH
Confidence            68999999999988  899999999999999988 678889999999999999999989999999999999999776 45


Q ss_pred             HHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          317 CAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       317 ~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      +..+.. .|+++.+++++...+..+++.|+++|.+||.
T Consensus        84 ~~~~~~-~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          84 KLIVLE-AGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHH-CCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            555666 5999999999999999999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=3.5e-09  Score=105.92  Aligned_cols=291  Identities=21%  Similarity=0.194  Sum_probs=218.8

Q ss_pred             CCCCCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHH
Q 014817           93 PTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHE  172 (418)
Q Consensus        93 ~~p~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~  172 (418)
                      ..|+.+...+.|++|+.++.++---. .|..|++.|..+++   ..|.... +.|+++|++.|..+..     ++++...
T Consensus        13 q~~k~~s~aETI~kLcDRvessTL~e-DRR~A~rgLKa~sr---kYR~~Vg-a~Gmk~li~vL~~D~~-----D~E~ik~   82 (970)
T KOG0946|consen   13 QPPKQQSAAETIEKLCDRVESSTLLE-DRRDAVRGLKAFSR---KYREEVG-AQGMKPLIQVLQRDYM-----DPEIIKY   82 (970)
T ss_pred             CCCccccHHhHHHHHHHHHhhccchh-hHHHHHHHHHHHHH---HHHHHHH-HcccHHHHHHHhhccC-----CHHHHHH
Confidence            44566666788999999998764333 47789999999986   3555444 6789999999988763     8999999


Q ss_pred             HHHHHhcCCCChh------HH----------Hhhcc-cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHh
Q 014817          173 SLALLVMFPLTET------EC----------MEIAS-DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQI  235 (418)
Q Consensus       173 a~~~L~~l~~~~~------~~----------~~~i~-~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i  235 (418)
                      ++..+.++..+++      +.          ...+. ..+.|..|+..+...+-.+|..++..|.++.+ ....+.+..+
T Consensus        83 ~LdTl~il~~~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls-~r~~e~q~~l  161 (970)
T KOG0946|consen   83 ALDTLLILTSHDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLS-CRPTELQDAL  161 (970)
T ss_pred             HHHHHHHHHhcCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHh-cCCHHHHHHH
Confidence            9999998876552      11          12333 57899999999999999999999999999975 6777888888


Q ss_pred             hchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH-cCchHHHHHHhcCC---Cc-ccHHHHHHHHHHH
Q 014817          236 SNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA-AGAAETLVDRLADF---DK-CDAERALATVELL  310 (418)
Q Consensus       236 ~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~-~G~v~~Lv~lL~~~---~~-~~~~~a~~~L~~L  310 (418)
                      ....-+|..|+.+|.+.  ...++..++-.|..|.....+..+++. .+++..|..++...   +. -+++.|+.+|-||
T Consensus       162 l~~P~gIS~lmdlL~Ds--rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NL  239 (970)
T KOG0946|consen  162 LVSPMGISKLMDLLRDS--REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNL  239 (970)
T ss_pred             HHCchhHHHHHHHHhhh--hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHH
Confidence            77788999999999998  788999999999999998888888776 79999999999742   34 4679999999999


Q ss_pred             hcCHh-HHHHHHhccCChHHHHHHHhc---CChHHH----------HHHHHHHHHHhc-CCH-----HHHHHHHhcChHH
Q 014817          311 CRIPA-GCAEFAEHALTVPLLVKTILK---ISDRAT----------EYAAGALAALCS-ASE-----RCQRDAVSAGVLT  370 (418)
Q Consensus       311 ~~~~~-~~~~i~~~~g~i~~Lv~~l~~---~~~~~~----------~~A~~~L~~l~~-~~~-----~~~~~~~~~g~i~  370 (418)
                      -.+.. +...+.+ .+.||.|.++|..   ++..+.          -.|+.++..+.. +++     .++..+...+++.
T Consensus       240 LK~N~SNQ~~FrE-~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~  318 (970)
T KOG0946|consen  240 LKNNISNQNFFRE-GSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLD  318 (970)
T ss_pred             HhhCcchhhHHhc-cccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHH
Confidence            97665 5555555 5999999988765   332111          234455555554 322     2456788899999


Q ss_pred             HHHHHHhhCC-CHHHHHHHHHHHHHHHh
Q 014817          371 QLLLLVQSDC-TDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       371 ~L~~ll~~~~-~~~~~~~A~~~L~~l~~  397 (418)
                      .|..++-+++ ...++..+--++.+..+
T Consensus       319 ~Lc~il~~~~vp~dIltesiitvAevVR  346 (970)
T KOG0946|consen  319 VLCTILMHPGVPADILTESIITVAEVVR  346 (970)
T ss_pred             HHHHHHcCCCCcHhHHHHHHHHHHHHHH
Confidence            9999987663 44455554444444443

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.25  E-value=8.7e-12  Score=118.94  Aligned_cols=72  Identities=17%  Similarity=0.333  Sum_probs=65.1

Q ss_pred             CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817           12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN   84 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~   84 (418)
                      ..+...|.||||.++|.+||+++|||+||..||.+|+.. ...||.|+..+....+.+|..|.++|+.|....
T Consensus        21 ~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~~R   92 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKNLR   92 (397)
T ss_pred             cccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHHhh
Confidence            467778999999999999999999999999999999986 468999999998778999999999999997654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.25  E-value=5.1e-12  Score=107.41  Aligned_cols=60  Identities=32%  Similarity=0.607  Sum_probs=51.8

Q ss_pred             CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHc---------------CCCCCCCCCCCCCCCCCcccH
Q 014817           12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT---------------GNTTCPVTRSPLTDFTLIPNH   71 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~---------------~~~~cp~~~~~l~~~~l~~n~   71 (418)
                      .+..++|.||||.+.++|||+++|||.||+.||.+|+..               +...||.|+..++...+.|..
T Consensus        13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy   87 (193)
T PLN03208         13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY   87 (193)
T ss_pred             ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence            355678999999999999999999999999999999852               235799999999888888765

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.23  E-value=1.6e-10  Score=109.59  Aligned_cols=197  Identities=18%  Similarity=0.121  Sum_probs=161.7

Q ss_pred             HHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHH
Q 014817          169 LAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDI  248 (418)
Q Consensus       169 v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~l  248 (418)
                      ....|+..|.|++.+. ..-..+.....+..||+.|...+.+........|..|   +-.++|+..++. .|.++.|+++
T Consensus       279 LLrva~ylLlNlAed~-~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKL---SIf~eNK~~M~~-~~iveKL~kl  353 (791)
T KOG1222|consen  279 LLRVAVYLLLNLAEDI-SVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKL---SIFDENKIVMEQ-NGIVEKLLKL  353 (791)
T ss_pred             HHHHHHHHHHHHhhhh-hHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHh---hhhccchHHHHh-ccHHHHHHHh
Confidence            4455667788888665 4445556678899999999999999999999999999   899999999976 7999999999


Q ss_pred             hhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChH
Q 014817          249 LKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVP  328 (418)
Q Consensus       249 L~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~  328 (418)
                      +...  +++.+...+..|+||+....++.+|+..|.+|.|..+|.+...  ...|+..|..++.++..+..+.-. .+|+
T Consensus       354 fp~~--h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~MfayT-dci~  428 (791)
T KOG1222|consen  354 FPIQ--HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAYT-DCIK  428 (791)
T ss_pred             cCCC--CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHHH-HHHH
Confidence            9998  8999999999999999999999999999999999999986432  346889999999988888888774 8999


Q ss_pred             HHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHH
Q 014817          329 LLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLV  376 (418)
Q Consensus       329 ~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll  376 (418)
                      .+++.+.. .+.++...-+..-.|||. +..+.+.+.+-.++..|++..
T Consensus       429 ~lmk~v~~~~~~~vdl~lia~ciNl~l-nkRNaQlvceGqgL~~LM~ra  476 (791)
T KOG1222|consen  429 LLMKDVLSGTGSEVDLALIALCINLCL-NKRNAQLVCEGQGLDLLMERA  476 (791)
T ss_pred             HHHHHHHhcCCceecHHHHHHHHHHHh-ccccceEEecCcchHHHHHHH
Confidence            99998876 444455444444478888 666677777777777776544

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=5.1e-09  Score=99.56  Aligned_cols=281  Identities=13%  Similarity=0.099  Sum_probs=209.3

Q ss_pred             CCCCCCChHHHHHHHHHhhcCCCch-hhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHH
Q 014817           94 TPKQPAEPSLVRTLLNQASSESNTY-GSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHE  172 (418)
Q Consensus        94 ~p~~~~~~~~i~~lv~~L~~~~~~~-~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~  172 (418)
                      .|+...-..++.++.+.++..-..+ +....|+-.|.+++. +-..-..++..+++..||+.|...       +.+....
T Consensus       252 ~p~netLk~e~dr~~kklk~~~~KQeqLLrva~ylLlNlAe-d~~~ElKMrrkniV~mLVKaLdr~-------n~~Ll~l  323 (791)
T KOG1222|consen  252 KPKNETLKEEIDRLNKKLKTAIRKQEQLLRVAVYLLLNLAE-DISVELKMRRKNIVAMLVKALDRS-------NSSLLTL  323 (791)
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhhHHHHHHHHhHHHHHHHHHccc-------chHHHHH
Confidence            3444333567788888876542211 122345666667774 344555688889999999999877       5677888


Q ss_pred             HHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC
Q 014817          173 SLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL  252 (418)
Q Consensus       173 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~  252 (418)
                      ....|..|+.-. +|+..+.+.|.++.|+++....+++.+......|.||   +.+..++..++. .|.+|.|+.+|.+.
T Consensus       324 v~~FLkKLSIf~-eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNl---SFD~glr~KMv~-~GllP~l~~ll~~d  398 (791)
T KOG1222|consen  324 VIKFLKKLSIFD-ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNL---SFDSGLRPKMVN-GGLLPHLASLLDSD  398 (791)
T ss_pred             HHHHHHHhhhhc-cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhc---cccccccHHHhh-ccchHHHHHHhCCc
Confidence            888899999888 8999999999999999999999999999999999999   889999999976 79999999999976


Q ss_pred             CCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCc-ccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHH
Q 014817          253 SSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDK-CDAERALATVELLCRIPAGCAEFAEHALTVPLLV  331 (418)
Q Consensus       253 ~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv  331 (418)
                      .    -...|+..|+.++.+++.+..+....+|+.+...+-++.. ++-...+..-.|||-+..+.+.+++. .++..|+
T Consensus       399 ~----~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceG-qgL~~LM  473 (791)
T KOG1222|consen  399 T----KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEG-QGLDLLM  473 (791)
T ss_pred             c----cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecC-cchHHHH
Confidence            3    3456889999999999999999999999999998766543 44333344447889888888888884 7888888


Q ss_pred             HHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          332 KTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       332 ~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      +.-......   --.+.+.||+.+....+..+++  .+.-|..++....++.---.+..+|.+|..
T Consensus       474 ~ra~k~~D~---lLmK~vRniSqHeg~tqn~Fid--yvgdLa~i~~nd~~E~F~~EClGtlanL~v  534 (791)
T KOG1222|consen  474 ERAIKSRDL---LLMKVVRNISQHEGATQNMFID--YVGDLAGIAKNDNSESFGLECLGTLANLKV  534 (791)
T ss_pred             HHHhcccch---HHHHHHHHhhhccchHHHHHHH--HHHHHHHHhhcCchHHHHHHHHHHHhhccc
Confidence            765442222   2345678888855555555444  456666777655456666667777777765

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.15  E-value=1.4e-09  Score=103.54  Aligned_cols=235  Identities=16%  Similarity=0.150  Sum_probs=165.7

Q ss_pred             hHHHHHHHhhcc-cccccCCChhHHHHHHHHHhcCCCChhHHHhhccc------CCchHHHHHHhcCCCHHHHHHHHHHH
Q 014817          147 VRAILSQVFFTN-INVKTASSPELAHESLALLVMFPLTETECMEIASD------ADKITSLSSLLFHSSIEVRVNSAALI  219 (418)
Q Consensus       147 ~i~~Lv~lL~~~-~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~------~g~i~~Lv~~L~~~~~~~~~~a~~~L  219 (418)
                      ....++.+|+.. .      +.++....+..+..+..++......+..      .....++++++.+++..++..|+.+|
T Consensus        56 ~~~~~l~lL~~~~~------~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iL  129 (312)
T PF03224_consen   56 YASLFLNLLNKLSS------NDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFIL  129 (312)
T ss_dssp             ------HHHHHH---------HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccC------cHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHH
Confidence            466777777655 3      6788899998888776555344444432      23688999999999999999999999


Q ss_pred             HHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC--ChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHh-----
Q 014817          220 EIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS--YPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRL-----  292 (418)
Q Consensus       220 ~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL-----  292 (418)
                      ..|+  +..+...... . .+.++.++.++.+...  +...+..++.+|.+|...++.|..+.+.|+++.|+++|     
T Consensus       130 t~Ll--~~~~~~~~~~-~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~  205 (312)
T PF03224_consen  130 TSLL--SQGPKRSEKL-V-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQAT  205 (312)
T ss_dssp             HHHH--TSTTT--HHH-H-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH----
T ss_pred             HHHH--HcCCccccch-H-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcc
Confidence            9995  3333322222 2 4688999998886421  23456899999999999999999999999999999999     


Q ss_pred             cCC--CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCH-HHHHHHHhcCh
Q 014817          293 ADF--DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCSASE-RCQRDAVSAGV  368 (418)
Q Consensus       293 ~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~g~  368 (418)
                      ..+  +..++-.++-+++.|+-+++....+..+ +.|+.|+++++. ..+++.+-++.+|.|+...++ .....|+..|+
T Consensus       206 ~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~-~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~~~~  284 (312)
T PF03224_consen  206 NSNSSGIQLQYQALLCLWLLSFEPEIAEELNKK-YLIPLLADILKDSIKEKVVRVSLAILRNLLSKAPKSNIELMVLCGL  284 (312)
T ss_dssp             -----HHHHHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH-H
T ss_pred             cCCCCchhHHHHHHHHHHHHhcCHHHHHHHhcc-chHHHHHHHHHhcccchHHHHHHHHHHHHHhccHHHHHHHHHHccH
Confidence            222  3467788999999999999999999996 799999999977 788899999999999998433 38888999999


Q ss_pred             HHHHHHHHh-hCCCHHHHHHHHHHH
Q 014817          369 LTQLLLLVQ-SDCTDRAKRKAQLLL  392 (418)
Q Consensus       369 i~~L~~ll~-~~~~~~~~~~A~~~L  392 (418)
                      ++.+-.+.. ...++.+.+--..+-
T Consensus       285 l~~l~~L~~rk~~Dedl~edl~~L~  309 (312)
T PF03224_consen  285 LKTLQNLSERKWSDEDLTEDLEFLK  309 (312)
T ss_dssp             HHHHHHHHSS--SSHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHH
Confidence            888755553 345777776554443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK09687 putative lyase; Provisional

Probab=99.13  E-value=9e-09  Score=95.84  Aligned_cols=223  Identities=17%  Similarity=0.077  Sum_probs=152.8

Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817          104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT  183 (418)
Q Consensus       104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~  183 (418)
                      +..+.+.+++.+  ...|..|++.|..+-.....      ..-+++.|..++..+.      ++.|+..|+.+|+.+...
T Consensus        56 ~~~l~~ll~~~d--~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~------d~~VR~~A~~aLG~~~~~  121 (280)
T PRK09687         56 FRLAIELCSSKN--PIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDK------SACVRASAINATGHRCKK  121 (280)
T ss_pred             HHHHHHHHhCCC--HHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCC------CHHHHHHHHHHHhccccc
Confidence            344444444442  33466777777776432110      1125677776644432      578888888888887533


Q ss_pred             hhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHH
Q 014817          184 ETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGI  263 (418)
Q Consensus       184 ~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~  263 (418)
                      ...     ....++..+...+.+.+..+|..++.+|..+   .          . ..+++.|+.+|++.  ++.++..|+
T Consensus       122 ~~~-----~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~---~----------~-~~ai~~L~~~L~d~--~~~VR~~A~  180 (280)
T PRK09687        122 NPL-----YSPKIVEQSQITAFDKSTNVRFAVAFALSVI---N----------D-EAAIPLLINLLKDP--NGDVRNWAA  180 (280)
T ss_pred             ccc-----cchHHHHHHHHHhhCCCHHHHHHHHHHHhcc---C----------C-HHHHHHHHHHhcCC--CHHHHHHHH
Confidence            210     1223466677777778888888888888766   2          1 34788899999887  788999999


Q ss_pred             HHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHH
Q 014817          264 KALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATE  343 (418)
Q Consensus       264 ~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~  343 (418)
                      .+|.++....+        .+++.|+.+|.+.+..++..|+..|..+-.           ..+++.|++.+.+++  ++.
T Consensus       181 ~aLg~~~~~~~--------~~~~~L~~~L~D~~~~VR~~A~~aLg~~~~-----------~~av~~Li~~L~~~~--~~~  239 (280)
T PRK09687        181 FALNSNKYDNP--------DIREAFVAMLQDKNEEIRIEAIIGLALRKD-----------KRVLSVLIKELKKGT--VGD  239 (280)
T ss_pred             HHHhcCCCCCH--------HHHHHHHHHhcCCChHHHHHHHHHHHccCC-----------hhHHHHHHHHHcCCc--hHH
Confidence            99998832221        467788999988888899999988876432           356888998887655  566


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHH
Q 014817          344 YAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLK  393 (418)
Q Consensus       344 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  393 (418)
                      .|+.+|.++..  +         .+++.|..+++.+.+..++.+|.+.|.
T Consensus       240 ~a~~ALg~ig~--~---------~a~p~L~~l~~~~~d~~v~~~a~~a~~  278 (280)
T PRK09687        240 LIIEAAGELGD--K---------TLLPVLDTLLYKFDDNEIITKAIDKLK  278 (280)
T ss_pred             HHHHHHHhcCC--H---------hHHHHHHHHHhhCCChhHHHHHHHHHh
Confidence            77777776654  2         377899999975559999999988875

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.07  E-value=8.4e-11  Score=74.74  Aligned_cols=38  Identities=37%  Similarity=0.815  Sum_probs=33.2

Q ss_pred             CcCccccccCC-eecCCCCcccHHHHHHHHHcCCCCCCCC
Q 014817           20 CPISLELMCDP-VTVCTGQTYDRPSIESWVATGNTTCPVT   58 (418)
Q Consensus        20 Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~~~~~~~~cp~~   58 (418)
                      ||||.+.+++| ++++|||+||+.||++|++. ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 57899999999999999998 6889986

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.03  E-value=8.1e-08  Score=93.32  Aligned_cols=278  Identities=12%  Similarity=0.072  Sum_probs=191.0

Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817          104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT  183 (418)
Q Consensus       104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~  183 (418)
                      ...++..|...  +......|...|..+...+..+.......-....|...|++.+      +...+..++..|..|...
T Consensus       103 ~~~fl~lL~~~--d~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~------~~~~~~~~v~~L~~LL~~  174 (429)
T cd00256         103 WEPFFNLLNRQ--DQFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNIT------NNDYVQTAARCLQMLLRV  174 (429)
T ss_pred             hHHHHHHHcCC--chhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccC------CcchHHHHHHHHHHHhCC
Confidence            45566666654  3334567788888776543322111110112334555555442      355677778888887777


Q ss_pred             hhHHHhhcccCCchHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817          184 ETECMEIASDADKITSLSSLLFHS--SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV  261 (418)
Q Consensus       184 ~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  261 (418)
                      + +.|..+.+.++++.|+.+|+..  +.+.+.+++-+++-|   +.+++....... .+.|+.|+++++... .+.+.+-
T Consensus       175 ~-~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlL---SF~~~~~~~~~~-~~~i~~l~~i~k~s~-KEKvvRv  248 (429)
T cd00256         175 D-EYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLL---TFNPHAAEVLKR-LSLIQDLSDILKEST-KEKVIRI  248 (429)
T ss_pred             c-hHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHH---hccHHHHHhhcc-ccHHHHHHHHHHhhh-hHHHHHH
Confidence            7 7899998888999999999763  468899999999999   778776666644 789999999999875 6789999


Q ss_pred             HHHHHHHHcccc-------ccHHHHHHcCchHHHHHHhcC---CCcccHHHHHH-------HHHHHhcCH----------
Q 014817          262 GIKALFALCLVK-------QTRYKAVAAGAAETLVDRLAD---FDKCDAERALA-------TVELLCRIP----------  314 (418)
Q Consensus       262 a~~aL~~L~~~~-------~n~~~i~~~G~v~~Lv~lL~~---~~~~~~~~a~~-------~L~~L~~~~----------  314 (418)
                      ++.+|.||....       .....|++.|+++ +++.|..   .|+++.+..-.       -+..++..+          
T Consensus       249 ~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~  327 (429)
T cd00256         249 VLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGR  327 (429)
T ss_pred             HHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCC
Confidence            999999998743       2345667777655 4555543   24444433221       222333322          


Q ss_pred             --------------hHHHHHHhcc-CChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhh
Q 014817          315 --------------AGCAEFAEHA-LTVPLLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQS  378 (418)
Q Consensus       315 --------------~~~~~i~~~~-g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~  378 (418)
                                    ++..++-+.. ..+..|+++|.. .++.+..-|+.=|..+++..|+-+..+.+.|+=..++.++.+
T Consensus       328 L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~h  407 (429)
T cd00256         328 LHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLNH  407 (429)
T ss_pred             ccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhcC
Confidence                          3333343321 255788888854 567777788888888888778888888889999999999987


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 014817          379 DCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       379 ~~~~~~~~~A~~~L~~l~~  397 (418)
                      . ++++|..|..+++.|-.
T Consensus       408 ~-d~~Vr~eAL~avQklm~  425 (429)
T cd00256         408 E-DPNVRYEALLAVQKLMV  425 (429)
T ss_pred             C-CHHHHHHHHHHHHHHHH
Confidence            7 99999999999987743

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PRK09687 putative lyase; Provisional

Probab=99.03  E-value=1.9e-08  Score=93.61  Aligned_cols=195  Identities=15%  Similarity=0.029  Sum_probs=114.2

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHH-hcCCCHHHHHHHHHHHHHHHhc
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSL-LFHSSIEVRVNSAALIEIVLAG  225 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~-L~~~~~~~~~~a~~~L~~L~~~  225 (418)
                      +++.+..++.+.       ++.++..|+++|+.|.... ..     ....++.|..+ +++.++.+|..|+.+|.++   
T Consensus        55 ~~~~l~~ll~~~-------d~~vR~~A~~aLg~lg~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~---  118 (280)
T PRK09687         55 VFRLAIELCSSK-------NPIERDIGADILSQLGMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHR---  118 (280)
T ss_pred             HHHHHHHHHhCC-------CHHHHHHHHHHHHhcCCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcc---
Confidence            445555555444       4566666666666654322 10     12345556555 4555666666677776666   


Q ss_pred             ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHH
Q 014817          226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALA  305 (418)
Q Consensus       226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~  305 (418)
                      .....    ... ..+++.|...+.+.  ++.++..++++|..+.          ...+++.|+.+|.+.+..+...|+.
T Consensus       119 ~~~~~----~~~-~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~----------~~~ai~~L~~~L~d~~~~VR~~A~~  181 (280)
T PRK09687        119 CKKNP----LYS-PKIVEQSQITAFDK--STNVRFAVAFALSVIN----------DEAAIPLLINLLKDPNGDVRNWAAF  181 (280)
T ss_pred             ccccc----ccc-hHHHHHHHHHhhCC--CHHHHHHHHHHHhccC----------CHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            22111    001 23556666666665  5666666666664432          1226777777777777777777777


Q ss_pred             HHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHH
Q 014817          306 TVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAK  385 (418)
Q Consensus       306 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~  385 (418)
                      +|..+...         ...+++.|+..+...+..++..|+++|..+-  ++         .+++.|+..|+++ +  .+
T Consensus       182 aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~--~~---------~av~~Li~~L~~~-~--~~  238 (280)
T PRK09687        182 ALNSNKYD---------NPDIREAFVAMLQDKNEEIRIEAIIGLALRK--DK---------RVLSVLIKELKKG-T--VG  238 (280)
T ss_pred             HHhcCCCC---------CHHHHHHHHHHhcCCChHHHHHHHHHHHccC--Ch---------hHHHHHHHHHcCC-c--hH
Confidence            77766211         1244567777777777788888877776632  22         3678888888665 4  45


Q ss_pred             HHHHHHHHHHHh
Q 014817          386 RKAQLLLKLLRD  397 (418)
Q Consensus       386 ~~A~~~L~~l~~  397 (418)
                      ..|...|..+..
T Consensus       239 ~~a~~ALg~ig~  250 (280)
T PRK09687        239 DLIIEAAGELGD  250 (280)
T ss_pred             HHHHHHHHhcCC
Confidence            566666665543

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=98.99  E-value=2e-10  Score=73.65  Aligned_cols=36  Identities=22%  Similarity=0.611  Sum_probs=23.1

Q ss_pred             CcCccccccC----CeecCCCCcccHHHHHHHHHcC---CCCCC
Q 014817           20 CPISLELMCD----PVTVCTGQTYDRPSIESWVATG---NTTCP   56 (418)
Q Consensus        20 Cpi~~~~~~d----Pv~~~~g~~~~r~~i~~~~~~~---~~~cp   56 (418)
                      ||||++ |.+    |++++|||+||+.||+++++.+   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 999    9999999999999999999853   34576

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=98.94  E-value=2.6e-10  Score=78.19  Aligned_cols=43  Identities=33%  Similarity=0.794  Sum_probs=31.6

Q ss_pred             cccCcCccccccCCeec-CCCCcccHHHHHHHHH-cCCCCCCCCC
Q 014817           17 HFRCPISLELMCDPVTV-CTGQTYDRPSIESWVA-TGNTTCPVTR   59 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~-~~~~~cp~~~   59 (418)
                      .+.||||+.+|+|||.. .|||+|+|.+|.+|+. .+...||+.+
T Consensus        11 ~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   11 SLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             -SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             ccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            58999999999999997 7999999999999994 3456699965

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=1.3e-07  Score=95.55  Aligned_cols=260  Identities=16%  Similarity=0.135  Sum_probs=200.9

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhh-cChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLAR-DSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      ...+.+|+..|.... +...+++|+.+|.++.. .+++.-.-|--.-.+|.|+.+|+...      +.++.-.|+.+|.+
T Consensus       166 sSk~kkLL~gL~~~~-Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~------n~DIMl~AcRalty  238 (1051)
T KOG0168|consen  166 SSKAKKLLQGLQAES-DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEH------NFDIMLLACRALTY  238 (1051)
T ss_pred             hHHHHHHHHhccccC-ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccc------cHHHHHHHHHHHHH
Confidence            346788999888764 33346888888887654 44444333333458999999998875      79999999999999


Q ss_pred             CCCChhHHHhhcccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817          180 FPLTETECMEIASDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRG  258 (418)
Q Consensus       180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  258 (418)
                      |+---+..-..+++.++||.|+.-|.. .-.++.+.++.+|..+   +.. ..+..+ . .|+|...+..|+--  +..+
T Consensus       239 l~evlP~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~i---SR~-H~~AiL-~-AG~l~a~LsylDFF--Si~a  310 (1051)
T KOG0168|consen  239 LCEVLPRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKI---SRR-HPKAIL-Q-AGALSAVLSYLDFF--SIHA  310 (1051)
T ss_pred             HHhhccchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHH---Hhh-ccHHHH-h-cccHHHHHHHHHHH--HHHH
Confidence            875544567788899999999987754 5688889999999999   433 234444 4 68899999888877  6789


Q ss_pred             hHHHHHHHHHHccc--cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc----CHhHHHHHHhccCChHHHHH
Q 014817          259 LKVGIKALFALCLV--KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR----IPAGCAEFAEHALTVPLLVK  332 (418)
Q Consensus       259 ~~~a~~aL~~L~~~--~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~----~~~~~~~i~~~~g~i~~Lv~  332 (418)
                      ++.|+.+..|.|..  .+.-.-++  .++|.|-.+|...+....+.++-++..++.    .++--+++..+ |.|....+
T Consensus       311 QR~AlaiaaN~Cksi~sd~f~~v~--ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~-dLi~~~~q  387 (1051)
T KOG0168|consen  311 QRVALAIAANCCKSIRSDEFHFVM--EALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSH-DLITNIQQ  387 (1051)
T ss_pred             HHHHHHHHHHHHhcCCCccchHHH--HHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhch-hHHHHHHH
Confidence            99999999999965  33333333  369999999998888889999988888883    56677788886 99999999


Q ss_pred             HHhcC----ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhh
Q 014817          333 TILKI----SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQS  378 (418)
Q Consensus       333 ~l~~~----~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~  378 (418)
                      ++.-.    +..+..-.++.|..+|.+++-......+.++...|.++|+.
T Consensus       388 Llsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  388 LLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             HHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhc
Confidence            88652    33445677788888888889888889999999999999964

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.90  E-value=1e-09  Score=70.71  Aligned_cols=39  Identities=36%  Similarity=0.887  Sum_probs=36.0

Q ss_pred             CcCccccccCCe-ecCCCCcccHHHHHHHHH-cCCCCCCCC
Q 014817           20 CPISLELMCDPV-TVCTGQTYDRPSIESWVA-TGNTTCPVT   58 (418)
Q Consensus        20 Cpi~~~~~~dPv-~~~~g~~~~r~~i~~~~~-~~~~~cp~~   58 (418)
                      ||||.+.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 889999999999999998 557779986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.89  E-value=8.5e-10  Score=99.71  Aligned_cols=67  Identities=21%  Similarity=0.377  Sum_probs=61.9

Q ss_pred             cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817           17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN   84 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~   84 (418)
                      -++|-||.++|+-||+++||||||--||.+++.. .+.||.|..++....+..|.-+.++|+.|...+
T Consensus        23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~~~R   89 (442)
T KOG0287|consen   23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLNFAR   89 (442)
T ss_pred             HHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHHHHH
Confidence            4699999999999999999999999999999986 788999999999999999999999999986643

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=98.88  E-value=3.8e-08  Score=93.60  Aligned_cols=198  Identities=15%  Similarity=0.045  Sum_probs=146.6

Q ss_pred             hHHHHHHhc--CCCHHHHHHHHHHHHHHHhcccchhhhhHhhch-----hhhHHHHHHHhhcCCCChhhhHHHHHHHHHH
Q 014817          197 ITSLSSLLF--HSSIEVRVNSAALIEIVLAGMRSQELRAQISNL-----DEIFEGVIDILKNLSSYPRGLKVGIKALFAL  269 (418)
Q Consensus       197 i~~Lv~~L~--~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~-----~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L  269 (418)
                      ...++.+|+  +.+.++..+....+..+.  ..++.....+...     .....++++++.++  |..+...|+..|..|
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll--~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~--D~~i~~~a~~iLt~L  132 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLL--SDDPSRVELFLELAKQDDSDPYSPFLKLLDRN--DSFIQLKAAFILTSL  132 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHH--H-SSSSHHHHHHHHH-TTH--HHHHHHH-S-S--SHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHH--hcCHHHHHHHHHhcccccchhHHHHHHHhcCC--CHHHHHHHHHHHHHH
Confidence            444555554  357999999999999995  4444444333321     12678899988888  899999999999999


Q ss_pred             ccccccHHHHHHcCchHHHHHHhcC----CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHH------hc-CC
Q 014817          270 CLVKQTRYKAVAAGAAETLVDRLAD----FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTI------LK-IS  338 (418)
Q Consensus       270 ~~~~~n~~~i~~~G~v~~Lv~lL~~----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l------~~-~~  338 (418)
                      ......+......+.++.+++.|.+    .+.+.+..++.+|.+|...++.|..+.+ .|+++.++.++      .+ .+
T Consensus       133 l~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~  211 (312)
T PF03224_consen  133 LSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSG  211 (312)
T ss_dssp             HTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------H
T ss_pred             HHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCc
Confidence            8877655555447788899988874    3456778999999999999999999999 49999999999      22 56


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ...+-+++-++|.|+. +++....+.+.++++.|+++++...-+++.|-+..+|+||....+
T Consensus       212 ~Ql~Y~~ll~lWlLSF-~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~~~~  272 (312)
T PF03224_consen  212 IQLQYQALLCLWLLSF-EPEIAEELNKKYLIPLLADILKDSIKEKVVRVSLAILRNLLSKAP  272 (312)
T ss_dssp             HHHHHHHHHHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTSSSS
T ss_pred             hhHHHHHHHHHHHHhc-CHHHHHHHhccchHHHHHHHHHhcccchHHHHHHHHHHHHHhccH
Confidence            6677899999999999 888899999999999999999877689999999999999998754

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.88  E-value=3.4e-07  Score=90.62  Aligned_cols=142  Identities=14%  Similarity=0.052  Sum_probs=109.3

Q ss_pred             hhhHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHHHhccCChHHHHHHH
Q 014817          257 RGLKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEFAEHALTVPLLVKTI  334 (418)
Q Consensus       257 ~~~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l  334 (418)
                      ..+.+|+-.+.+++.. ..-+..+-+..++.+||+++..++..++..++++|.||. .....|.++.+. |+|..+..++
T Consensus       392 ~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~-ngId~l~s~~  470 (678)
T KOG1293|consen  392 DFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRN-NGIDILESML  470 (678)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHc-CcHHHHHHHh
Confidence            3444444555555433 222223445678999999999888999999999999999 457889999995 9999999999


Q ss_pred             hcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          335 LKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       335 ~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      .+.+...+..+.|+|+++..++.+..+......+...++.-+-++.+..+++.+..+||||.-..
T Consensus       471 ~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~  535 (678)
T KOG1293|consen  471 TDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNS  535 (678)
T ss_pred             cCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc
Confidence            99999999999999999999777766665555555444444445559999999999999998764

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.87  E-value=5.9e-10  Score=76.23  Aligned_cols=59  Identities=22%  Similarity=0.468  Sum_probs=33.2

Q ss_pred             CcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHH
Q 014817           16 YHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLI   77 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i   77 (418)
                      .-++|++|.++|++||.+ .|.|.||..||.+.+.   ..||+|+.+-...++.-|+.|.++|
T Consensus         6 ~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~---~~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    6 ELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG---SECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             HTTS-SSS-S--SS-B---SSS--B-TTTGGGGTT---TB-SSS--B-S-SS----HHHHHHH
T ss_pred             HhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC---CCCCCcCChHHHHHHHhhhhhhccC
Confidence            347899999999999976 8999999999987554   2399999998888999999888875

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.83  E-value=2.5e-09  Score=95.34  Aligned_cols=50  Identities=24%  Similarity=0.511  Sum_probs=42.0

Q ss_pred             CCCCcccCcCccccccCC--------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           13 QIPYHFRCPISLELMCDP--------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dP--------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      +...+..||||++.+.++        ++.+|||+||+.||.+|+.. ..+||.|+.++.
T Consensus       170 ~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~  227 (238)
T PHA02929        170 NRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI  227 (238)
T ss_pred             cCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence            345578899999988774        56689999999999999885 778999998764

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=2.4e-07  Score=86.18  Aligned_cols=184  Identities=17%  Similarity=0.062  Sum_probs=150.3

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV  245 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L  245 (418)
                      +.+-++.|+.-|..+..+- +|..-+...|++.+++..|++++.++|+.|+++|...+  ..++...+.+.+ .|+++.|
T Consensus        96 ~le~ke~ald~Le~lve~i-DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~--qNNP~~Qe~v~E-~~~L~~L  171 (342)
T KOG2160|consen   96 DLEDKEDALDNLEELVEDI-DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAV--QNNPKSQEQVIE-LGALSKL  171 (342)
T ss_pred             CHHHHHHHHHHHHHHHHhh-hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHH--hcCHHHHHHHHH-cccHHHH
Confidence            5677888888888877655 78888999999999999999999999999999999996  567777777765 7899999


Q ss_pred             HHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCC--CcccHHHHHHHHHHHhcCHhHHHHHHh
Q 014817          246 IDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADF--DKCDAERALATVELLCRIPAGCAEFAE  322 (418)
Q Consensus       246 v~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~  322 (418)
                      +.+|.... +..++..|+-|++.|-.+. .....+...++...|..+|.++  +...+..++.++..|......-..+..
T Consensus       172 l~~ls~~~-~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~  250 (342)
T KOG2160|consen  172 LKILSSDD-PNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS  250 (342)
T ss_pred             HHHHccCC-CchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            99999764 5677899999999999875 4788888999999999999984  566788999999998854433333444


Q ss_pred             ccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          323 HALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       323 ~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      ..|....++.+....+..+.+.++.++..+..
T Consensus       251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            34777777777777888899999998877665

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=5.3e-07  Score=83.90  Aligned_cols=200  Identities=16%  Similarity=0.073  Sum_probs=154.4

Q ss_pred             CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHHHHcCc
Q 014817          206 HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKAVAAGA  284 (418)
Q Consensus       206 ~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~  284 (418)
                      +.+.+-++.|..-|..+   ..+-+|...+.. .|++.+|+..+++.  +..+++.|+++|...+.++. ....+.+.|+
T Consensus        94 s~~le~ke~ald~Le~l---ve~iDnAndl~~-~ggl~~ll~~l~~~--~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~  167 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEEL---VEDIDNANDLIS-LGGLVPLLGYLENS--DAELRELAARVIGTAVQNNPKSQEQVIELGA  167 (342)
T ss_pred             cCCHHHHHHHHHHHHHH---HHhhhhHHhHhh-ccCHHHHHHHhcCC--cHHHHHHHHHHHHHHHhcCHHHHHHHHHccc
Confidence            34688899999999999   566677777765 68899999999998  89999999999999998765 7778899999


Q ss_pred             hHHHHHHhcCCC-cccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHH
Q 014817          285 AETLVDRLADFD-KCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILK--ISDRATEYAAGALAALCSASERCQ  360 (418)
Q Consensus       285 v~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~~~~~~~  360 (418)
                      ++.|+..|.+.+ ..++.+|+.++..|.++ ..+...+.. .++...|...|.+  .+...+..|+-.+..+........
T Consensus       168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~-~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~  246 (342)
T KOG2160|consen  168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLK-LNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDE  246 (342)
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHh-cCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhh
Confidence            999999998654 45668999999999965 467777777 4789999999988  678888999999999998777667


Q ss_pred             HHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHH-HHHhhCCCCCCCCCCCCCccc
Q 014817          361 RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLK-LLRDSWPQDSIGNSDDFACSE  414 (418)
Q Consensus       361 ~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~-~l~~~~~~~~~~~~~~~~~~~  414 (418)
                      ..+...|....+..+.... +...++.|...+- .+..+.. +..++-.+..+.+
T Consensus       247 d~~~~~~f~~~~~~l~~~l-~~~~~e~~l~~~l~~l~~~~~-~~~~~~~~~~l~e  299 (342)
T KOG2160|consen  247 DIASSLGFQRVLENLISSL-DFEVNEAALTALLSLLSELST-RKELFVSLLNLEE  299 (342)
T ss_pred             hHHHHhhhhHHHHHHhhcc-chhhhHHHHHHHHHHHHHHhh-cchhhhhhhhHHH
Confidence            7666777777777666555 7777776655444 4444433 2235554544433

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.77  E-value=4.9e-09  Score=70.60  Aligned_cols=47  Identities=26%  Similarity=0.477  Sum_probs=40.8

Q ss_pred             CcccCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           16 YHFRCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      +++.|+||.+..+++++.+|||. ||..|+.+|+. ....||.|++++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence            46789999999999999999999 99999999998 4788999998764

...

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.74  E-value=2.3e-06  Score=92.71  Aligned_cols=120  Identities=14%  Similarity=0.019  Sum_probs=83.4

Q ss_pred             HHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHH
Q 014817          242 FEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFA  321 (418)
Q Consensus       242 i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~  321 (418)
                      ++.|..++++.  ++.++..|+.+|.++....         .+++.++..|.+.+..++..|+.+|..+..         
T Consensus       777 ~~~L~~ll~D~--d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~---------  836 (897)
T PRK13800        777 GDAVRALTGDP--DPLVRAAALAALAELGCPP---------DDVAAATAALRASAWQVRQGAARALAGAAA---------  836 (897)
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhcCCChHHHHHHHHHHHhccc---------
Confidence            56667777666  6777777777776663221         122446667776666777777777765432         


Q ss_pred             hccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817          322 EHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL  394 (418)
Q Consensus       322 ~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  394 (418)
                        ...++.|+.+|.+.+..++..|+.+|..+. +++.         ..+.|...++.. +..+|+.|...|+.
T Consensus       837 --~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~-~~~~---------a~~~L~~al~D~-d~~Vr~~A~~aL~~  896 (897)
T PRK13800        837 --DVAVPALVEALTDPHLDVRKAAVLALTRWP-GDPA---------ARDALTTALTDS-DADVRAYARRALAH  896 (897)
T ss_pred             --cchHHHHHHHhcCCCHHHHHHHHHHHhccC-CCHH---------HHHHHHHHHhCC-CHHHHHHHHHHHhh
Confidence              246688999999999999999999998862 2333         345666777666 99999999998863

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=9.2e-09  Score=85.15  Aligned_cols=52  Identities=21%  Similarity=0.509  Sum_probs=44.0

Q ss_pred             cccCcCccccccCCe--ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 014817           17 HFRCPISLELMCDPV--TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIP   69 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv--~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~   69 (418)
                      -|.||||++-++.-+  -..|||.||+.||++.++. ...||.|++.+....+.+
T Consensus       131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~r  184 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFHR  184 (187)
T ss_pred             ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhee
Confidence            389999999998755  4689999999999999986 678999999887666543

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.72  E-value=1.6e-06  Score=93.92  Aligned_cols=225  Identities=16%  Similarity=0.059  Sum_probs=135.0

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      ..++.|++.|...++  .-|..|+..|....           ..++++.|+..|.++       +..|+..|+.+|..+.
T Consensus       621 ~~~~~L~~~L~D~d~--~VR~~Av~~L~~~~-----------~~~~~~~L~~aL~D~-------d~~VR~~Aa~aL~~l~  680 (897)
T PRK13800        621 PSVAELAPYLADPDP--GVRRTAVAVLTETT-----------PPGFGPALVAALGDG-------AAAVRRAAAEGLRELV  680 (897)
T ss_pred             hhHHHHHHHhcCCCH--HHHHHHHHHHhhhc-----------chhHHHHHHHHHcCC-------CHHHHHHHHHHHHHHH
Confidence            345566677765433  33566777776653           134678888888666       5788998888887663


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV  261 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  261 (418)
                      ...          ...+.|...|.+.++.+|..++.+|..+   ...            -...|+..|++.  ++.++..
T Consensus       681 ~~~----------~~~~~L~~~L~~~d~~VR~~A~~aL~~~---~~~------------~~~~l~~~L~D~--d~~VR~~  733 (897)
T PRK13800        681 EVL----------PPAPALRDHLGSPDPVVRAAALDVLRAL---RAG------------DAALFAAALGDP--DHRVRIE  733 (897)
T ss_pred             hcc----------CchHHHHHHhcCCCHHHHHHHHHHHHhh---ccC------------CHHHHHHHhcCC--CHHHHHH
Confidence            211          1124566677777777777777777666   211            112344445544  5555555


Q ss_pred             HHHHHHHHcc--------ccc---cHHHHH---------HcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHH
Q 014817          262 GIKALFALCL--------VKQ---TRYKAV---------AAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFA  321 (418)
Q Consensus       262 a~~aL~~L~~--------~~~---n~~~i~---------~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~  321 (418)
                      |+.+|..+-.        .++   -|...+         +.+.++.|..++.+.+..++..|+.+|..+...+       
T Consensus       734 Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~-------  806 (897)
T PRK13800        734 AVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAGGAPAGDAVRALTGDPDPLVRAAALAALAELGCPP-------  806 (897)
T ss_pred             HHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccccchhHHHHHHHhcCCCHHHHHHHHHHHHhcCCcc-------
Confidence            5555554310        000   011000         1123566777777767777777777776653211       


Q ss_pred             hccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 014817          322 EHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLL  395 (418)
Q Consensus       322 ~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l  395 (418)
                         ..+..++..+.+.+..++..|+.+|..+..           ...++.|+.+|.+. +..+|..|+..|..+
T Consensus       807 ---~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~~~L~D~-~~~VR~~A~~aL~~~  865 (897)
T PRK13800        807 ---DDVAAATAALRASAWQVRQGAARALAGAAA-----------DVAVPALVEALTDP-HLDVRKAAVLALTRW  865 (897)
T ss_pred             ---hhHHHHHHHhcCCChHHHHHHHHHHHhccc-----------cchHHHHHHHhcCC-CHHHHHHHHHHHhcc
Confidence               122446666777777788888888766543           22458888888777 999999999999876

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=6.4e-07  Score=90.76  Aligned_cols=204  Identities=16%  Similarity=0.160  Sum_probs=160.5

Q ss_pred             ChhHHHHHHHHHh-cCCCChhHHHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHH
Q 014817          166 SPELAHESLALLV-MFPLTETECMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFE  243 (418)
Q Consensus       166 ~~~v~~~a~~~L~-~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~  243 (418)
                      ++..|..|+.-|+ +|..++++.-..+--...+|.|+.+|++. +.++...|+++|.+|.  -..+.....+ ...++||
T Consensus       181 Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~--evlP~S~a~v-V~~~aIP  257 (1051)
T KOG0168|consen  181 DESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLC--EVLPRSSAIV-VDEHAIP  257 (1051)
T ss_pred             ChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH--hhccchhhee-ecccchH
Confidence            4556777777666 55666655555555567899999999876 6999999999999995  4455544444 4478999


Q ss_pred             HHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc--CHhHHHHHH
Q 014817          244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR--IPAGCAEFA  321 (418)
Q Consensus       244 ~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~  321 (418)
                      .|++-|..=. ..++.+.++.||-.|+..+.  ..++.+|++-..+.+|.=-...++..|+.+..|+|.  .++.-..++
T Consensus       258 vl~~kL~~Ie-yiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v~  334 (1051)
T KOG0168|consen  258 VLLEKLLTIE-YIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFVM  334 (1051)
T ss_pred             HHHHhhhhhh-hhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHHH
Confidence            9998776532 67899999999999987653  577899999999999975456788999999999994  345555555


Q ss_pred             hccCChHHHHHHHhcCChHHHHHHHHHHHHHhc---CCHHHHHHHHhcChHHHHHHHHhh
Q 014817          322 EHALTVPLLVKTILKISDRATEYAAGALAALCS---ASERCQRDAVSAGVLTQLLLLVQS  378 (418)
Q Consensus       322 ~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~ll~~  378 (418)
                      +   ++|.|-.+|...+...-+.++.++..++.   +.++..+.+...|.+.....||..
T Consensus       335 e---alPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsv  391 (1051)
T KOG0168|consen  335 E---ALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSV  391 (1051)
T ss_pred             H---HHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhc
Confidence            4   49999999999999999999999988886   678888888899998888888754

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.70  E-value=8.2e-09  Score=91.49  Aligned_cols=66  Identities=21%  Similarity=0.303  Sum_probs=58.4

Q ss_pred             ccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817           18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN   84 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~   84 (418)
                      ++|-||.+.++-|+.++||||||.-||.+++.. .++||.|+.+....-+.-+..++..++.+....
T Consensus        26 lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~~~r   91 (391)
T COG5432          26 LRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHARNR   91 (391)
T ss_pred             HHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhhhcc
Confidence            599999999999999999999999999999986 789999999988777777777888888876643

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.4e-08  Score=90.72  Aligned_cols=55  Identities=22%  Similarity=0.497  Sum_probs=47.9

Q ss_pred             CCCCC-cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014817           12 VQIPY-HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTL   67 (418)
Q Consensus        12 ~~~~~-~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l   67 (418)
                      ..+|+ .+.|-+|++-++||--++|||.||=+||.+|..+ ...||.|++.+++..+
T Consensus       233 ~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  233 SSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV  288 (293)
T ss_pred             ccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence            34444 6999999999999999999999999999999986 4559999999887665

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.67  E-value=8.4e-09  Score=67.44  Aligned_cols=40  Identities=38%  Similarity=0.826  Sum_probs=33.8

Q ss_pred             cCcCcccccc---CCeecCCCCcccHHHHHHHHHcCCCCCCCCC
Q 014817           19 RCPISLELMC---DPVTVCTGQTYDRPSIESWVATGNTTCPVTR   59 (418)
Q Consensus        19 ~Cpi~~~~~~---dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~   59 (418)
                      .||||.+.|.   .++.++|||.|++.||.+|++. +.+||.|+
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            4999999994   5667799999999999999987 57999985

...

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.65  E-value=1.4e-08  Score=88.06  Aligned_cols=57  Identities=30%  Similarity=0.595  Sum_probs=50.5

Q ss_pred             CcccCcCccccccCCeecCCCCcccHHHHHHHHHc--CCCCCCCCCCCCCCCCCcccHH
Q 014817           16 YHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT--GNTTCPVTRSPLTDFTLIPNHT   72 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~cp~~~~~l~~~~l~~n~~   72 (418)
                      ..|-|-||++.-+|||++.|||-||=-||-+|+.-  +...||+|+..++.+.++|-+.
T Consensus        46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG  104 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG  104 (230)
T ss_pred             CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence            47999999999999999999999999999999873  3566899999999888888653

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.64  E-value=3.4e-08  Score=64.74  Aligned_cols=43  Identities=40%  Similarity=0.966  Sum_probs=38.6

Q ss_pred             cCcCccccccCCeecC-CCCcccHHHHHHHHHcCCCCCCCCCCC
Q 014817           19 RCPISLELMCDPVTVC-TGQTYDRPSIESWVATGNTTCPVTRSP   61 (418)
Q Consensus        19 ~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~cp~~~~~   61 (418)
                      .|+||.+.+.+|+.+. |||.|++.|+.+|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4999999999999886 999999999999998767889999864

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.63  E-value=2.4e-05  Score=76.32  Aligned_cols=242  Identities=14%  Similarity=0.102  Sum_probs=176.8

Q ss_pred             ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhccc-----CCchHHHHHHhcCCCHHHHHHHHHHHH
Q 014817          146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASD-----ADKITSLSSLLFHSSIEVRVNSAALIE  220 (418)
Q Consensus       146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-----~g~i~~Lv~~L~~~~~~~~~~a~~~L~  220 (418)
                      ..+..++.+|+...      +.++....+..+.-+...++..-..+.+     .+...+++.+|.+++.-+...++.+|.
T Consensus        53 ~y~~~~l~ll~~~~------~~d~vqyvL~Li~dll~~~~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt  126 (429)
T cd00256          53 QYVKTFVNLLSQID------KDDTVRYVLTLIDDMLQEDDTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA  126 (429)
T ss_pred             HHHHHHHHHHhccC------cHHHHHHHHHHHHHHHHhchHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence            46777888887653      5778888888877666555333333333     467888889999999999999999999


Q ss_pred             HHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC--Ccc
Q 014817          221 IVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF--DKC  298 (418)
Q Consensus       221 ~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~--~~~  298 (418)
                      .++  +......... ...-.+.-|...+.+.. +...+..++.+|..|...++.|..+.+.++++.|+++|...  ...
T Consensus       127 ~l~--~~~~~~~~~~-~l~~~~~~l~~~l~~~~-~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Q  202 (429)
T cd00256         127 KLA--CFGLAKMEGS-DLDYYFNWLKEQLNNIT-NNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQ  202 (429)
T ss_pred             HHH--hcCccccchh-HHHHHHHHHHHHhhccC-CcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHH
Confidence            996  2222110100 00113334555566542 56788889999999999999999999999999999999753  346


Q ss_pred             cHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhcC------CHHHHHHHHhcChHHH
Q 014817          299 DAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCSA------SERCQRDAVSAGVLTQ  371 (418)
Q Consensus       299 ~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~------~~~~~~~~~~~g~i~~  371 (418)
                      ++-.++-++..|+-+++....+.. .+.|+.++++++. .-.++.+-++.+|.|+...      .......|+..|+++.
T Consensus       203 l~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~~  281 (429)
T cd00256         203 LQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLKT  281 (429)
T ss_pred             HHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHHH
Confidence            778899999999988887777766 4999999999977 6777889999999999872      2245567888888765


Q ss_pred             HHHHHh--hCCCHHHHHHHHHHHHHHHhhC
Q 014817          372 LLLLVQ--SDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       372 L~~ll~--~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      + ..|+  ...++.+.+--..+-..|.+.-
T Consensus       282 l-~~L~~rk~~DedL~edl~~L~e~L~~~~  310 (429)
T cd00256         282 L-QSLEQRKYDDEDLTDDLKFLTEELKNSV  310 (429)
T ss_pred             H-HHHhcCCCCcHHHHHHHHHHHHHHHHHH
Confidence            5 5554  3457888877777777776653

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.61  E-value=3.6e-08  Score=86.15  Aligned_cols=76  Identities=38%  Similarity=0.563  Sum_probs=70.9

Q ss_pred             CCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817           10 LSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR   85 (418)
Q Consensus        10 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~   85 (418)
                      .+.++|+.++|.|+.++|++||+.|+|-||+|..|++.+..-..+.|+|+.++....++||.+++..|..|.+.|.
T Consensus       204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n~  279 (284)
T KOG4642|consen  204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKENE  279 (284)
T ss_pred             ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhcc
Confidence            3468999999999999999999999999999999999998767889999999999999999999999999998874

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.61  E-value=3e-06  Score=80.82  Aligned_cols=269  Identities=14%  Similarity=0.073  Sum_probs=185.0

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +....|++++.+++.+.+-++++.+.|..+..  .+|++.++.-| ...++.+-+...      .++.+...+.+|.++.
T Consensus       180 ~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e------~~e~aR~~~~il~~mF  250 (832)
T KOG3678|consen  180 GGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKERE------PVELARSVAGILEHMF  250 (832)
T ss_pred             chHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcC------cHHHHHHHHHHHHHHh
Confidence            34567899999887665568889999998865  57888888766 555555543332      4788899999999998


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV  261 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  261 (418)
                      .+.++....++..|++..++-..+..++.+..+++.+|.|++- ......+..|.+ ..+-+-|.-+..+.  +.-.+-+
T Consensus       251 KHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L-~~~~a~qrrmve-Kr~~EWLF~LA~sk--Del~R~~  326 (832)
T KOG3678|consen  251 KHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCAL-HGGQAVQRRMVE-KRAAEWLFPLAFSK--DELLRLH  326 (832)
T ss_pred             hhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhh-hchhHHHHHHHH-hhhhhhhhhhhcch--HHHHHHH
Confidence            8887888888899999999999999999999999999999831 234456666655 44666677777776  7788999


Q ss_pred             HHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817          262 GIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRA  341 (418)
Q Consensus       262 a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~  341 (418)
                      |+-+..-|+.+.+.-..+-+.|.+..+=.++.+-|+.--          +. +.....-.....-+..|+.+|.+  .+.
T Consensus       327 AClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~F----------AR-D~hd~aQG~~~d~LqRLvPlLdS--~R~  393 (832)
T KOG3678|consen  327 ACLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGRF----------AR-DAHDYAQGRGPDDLQRLVPLLDS--NRL  393 (832)
T ss_pred             HHHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcchh----------hh-hhhhhhccCChHHHHHhhhhhhc--chh
Confidence            999999999999877777777766554445554444321          11 11111111112346677877763  333


Q ss_pred             HHHHHHHHHHHhc----CCHHHH-HHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          342 TEYAAGALAALCS----ASERCQ-RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       342 ~~~A~~~L~~l~~----~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      ..+++.+ ..+|.    .+.... +.+-+-|+|+.|-++.++. +.....-|..+|+.+-+.
T Consensus       394 EAq~i~A-F~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGEE  453 (832)
T KOG3678|consen  394 EAQCIGA-FYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGEE  453 (832)
T ss_pred             hhhhhHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhccc
Confidence            3444444 23343    222223 3344569999998888766 777777788888888764

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=4.8e-08  Score=93.59  Aligned_cols=70  Identities=27%  Similarity=0.479  Sum_probs=59.2

Q ss_pred             CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817           12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN   84 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~   84 (418)
                      ....+++.||||.+.|++|++++|||+||+.||..++. ....||.|+. ... .+.+|..+..+++.+...+
T Consensus         8 ~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~~   77 (386)
T KOG2177|consen    8 EVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQLR   77 (386)
T ss_pred             hhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhcC
Confidence            35567889999999999999999999999999999998 5677999986 322 6678888988888887764

>smart00184 RING Ring finger

Probab=98.56  E-value=6.5e-08  Score=61.14  Aligned_cols=39  Identities=46%  Similarity=0.991  Sum_probs=35.9

Q ss_pred             CcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCC
Q 014817           20 CPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVT   58 (418)
Q Consensus        20 Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~   58 (418)
                      ||||.+..++|++++|||.|+..|+.+|+..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999998656779976

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.55  E-value=9.3e-06  Score=83.19  Aligned_cols=244  Identities=14%  Similarity=0.108  Sum_probs=133.7

Q ss_pred             cccHHHHHHHHHHHHhccCCCcccCCCCCCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcCh
Q 014817           68 IPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNV  147 (418)
Q Consensus        68 ~~n~~L~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~  147 (418)
                      ..+..++++.--+...-....      |.  ...-.+..+.+-|.+++  ...+.-|++.|..+.  +++..+.     .
T Consensus        53 s~~~~~Krl~yl~l~~~~~~~------~~--~~~l~~n~l~kdl~~~n--~~~~~lAL~~l~~i~--~~~~~~~-----l  115 (526)
T PF01602_consen   53 SKDLELKRLGYLYLSLYLHED------PE--LLILIINSLQKDLNSPN--PYIRGLALRTLSNIR--TPEMAEP-----L  115 (526)
T ss_dssp             SSSHHHHHHHHHHHHHHTTTS------HH--HHHHHHHHHHHHHCSSS--HHHHHHHHHHHHHH---SHHHHHH-----H
T ss_pred             CCCHHHHHHHHHHHHHHhhcc------hh--HHHHHHHHHHHhhcCCC--HHHHHHHHhhhhhhc--ccchhhH-----H
Confidence            556677777666555421100      00  00012345556665553  345677888888876  2332222     4


Q ss_pred             HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817          148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR  227 (418)
Q Consensus       148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~  227 (418)
                      ++.+.+++.++       ++.|+..|+.++..+....   ...+... .++.+.++|.+.++.++..|+.++..+   ..
T Consensus       116 ~~~v~~ll~~~-------~~~VRk~A~~~l~~i~~~~---p~~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i---~~  181 (526)
T PF01602_consen  116 IPDVIKLLSDP-------SPYVRKKAALALLKIYRKD---PDLVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI---KC  181 (526)
T ss_dssp             HHHHHHHHHSS-------SHHHHHHHHHHHHHHHHHC---HCCHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH---HC
T ss_pred             HHHHHHHhcCC-------chHHHHHHHHHHHHHhccC---HHHHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH---cc
Confidence            67788888776       5789999988888765432   2222222 688899999888899999888888888   33


Q ss_pred             chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817          228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATV  307 (418)
Q Consensus       228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L  307 (418)
                      .++....+.  ...+..|.+++...  ++-.+..+++.|..++........-  ...++.+..++.+.+..+.-.++.++
T Consensus       182 ~~~~~~~~~--~~~~~~L~~~l~~~--~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~l~~~l~s~~~~V~~e~~~~i  255 (526)
T PF01602_consen  182 NDDSYKSLI--PKLIRILCQLLSDP--DPWLQIKILRLLRRYAPMEPEDADK--NRIIEPLLNLLQSSSPSVVYEAIRLI  255 (526)
T ss_dssp             THHHHTTHH--HHHHHHHHHHHTCC--SHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcchhhhhH--HHHHHHhhhccccc--chHHHHHHHHHHHhcccCChhhhhH--HHHHHHHHHHhhccccHHHHHHHHHH
Confidence            333211221  23555555555555  5666666666666665443221100  33444555555544445555555555


Q ss_pred             HHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          308 ELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       308 ~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      ..+...+.    +..  .+++.|++++.+.++.++-.++..|..++.
T Consensus       256 ~~l~~~~~----~~~--~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~  296 (526)
T PF01602_consen  256 IKLSPSPE----LLQ--KAINPLIKLLSSSDPNVRYIALDSLSQLAQ  296 (526)
T ss_dssp             HHHSSSHH----HHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHCC
T ss_pred             HHhhcchH----HHH--hhHHHHHHHhhcccchhehhHHHHHHHhhc
Confidence            55554443    111  234445555554555555555555555554

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=2.9e-06  Score=85.55  Aligned_cols=217  Identities=14%  Similarity=0.052  Sum_probs=174.0

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCC--CHHHHHHHHHHHHHHHh
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHS--SIEVRVNSAALIEIVLA  224 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~a~~~L~~L~~  224 (418)
                      .|+.|++-+.+..      -.+-++.|+..|..++.   ..|..++..| +++|+..|+.+  ++++...+..++.++.+
T Consensus        23 TI~kLcDRvessT------L~eDRR~A~rgLKa~sr---kYR~~Vga~G-mk~li~vL~~D~~D~E~ik~~LdTl~il~~   92 (970)
T KOG0946|consen   23 TIEKLCDRVESST------LLEDRRDAVRGLKAFSR---KYREEVGAQG-MKPLIQVLQRDYMDPEIIKYALDTLLILTS   92 (970)
T ss_pred             HHHHHHHHHhhcc------chhhHHHHHHHHHHHHH---HHHHHHHHcc-cHHHHHHHhhccCCHHHHHHHHHHHHHHHh
Confidence            4677777776553      35668889988887765   6788887665 89999999765  79999999999999952


Q ss_pred             cccch------hh----------hhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc--ccHHHHHH-cCch
Q 014817          225 GMRSQ------EL----------RAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK--QTRYKAVA-AGAA  285 (418)
Q Consensus       225 ~s~~~------~~----------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~--~n~~~i~~-~G~v  285 (418)
                        .++      +.          .+.+....+.|..|+..++..  +--++..+...|.+|-.+.  +-+..+.. --+|
T Consensus        93 --~dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~--DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gI  168 (970)
T KOG0946|consen   93 --HDDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEF--DFHVRLYAIQLLSALLSCRPTELQDALLVSPMGI  168 (970)
T ss_pred             --cCcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhh--chhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhH
Confidence              221      11          222335567899999999988  8899999999999997654  45555544 5799


Q ss_pred             HHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-C---ChHHHHHHHHHHHHHhcCCHHHHH
Q 014817          286 ETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-I---SDRATEYAAGALAALCSASERCQR  361 (418)
Q Consensus       286 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~---~~~~~~~A~~~L~~l~~~~~~~~~  361 (418)
                      ..|+.+|.+....++..++-.|..|+.+....++++...++...|..++.. +   .-.+-+-++..|.||-+.+..++.
T Consensus       169 S~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~  248 (970)
T KOG0946|consen  169 SKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQN  248 (970)
T ss_pred             HHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhh
Confidence            999999998888899999999999998888888887777999999999987 2   335678999999999998888888


Q ss_pred             HHHhcChHHHHHHHHh
Q 014817          362 DAVSAGVLTQLLLLVQ  377 (418)
Q Consensus       362 ~~~~~g~i~~L~~ll~  377 (418)
                      -+.+.+.++.|..+|.
T Consensus       249 ~FrE~~~i~rL~klL~  264 (970)
T KOG0946|consen  249 FFREGSYIPRLLKLLS  264 (970)
T ss_pred             HHhccccHHHHHhhcC
Confidence            8889999999998885

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.53  E-value=6.3e-06  Score=81.82  Aligned_cols=225  Identities=15%  Similarity=0.086  Sum_probs=151.9

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV  245 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L  245 (418)
                      +..+...|+-.+.+++.+....+..+....++.+||++|..++..++..+.++|.||.  ....+.|..+.. .|+|+.|
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~dp~~~i~~~~lgai~NlV--mefs~~kskfl~-~ngId~l  466 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLMDPEIMIMGITLGAICNLV--MEFSNLKSKFLR-NNGIDIL  466 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhhCcchhHHHHHHHHHHHHH--hhcccHHHHHHH-cCcHHHH
Confidence            4566777777777777777667777778899999999999999999999999999998  778888888866 7899999


Q ss_pred             HHHhhcCCCChhhhHHHHHHHHHHccccccHHHH--HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhHHHHHHh
Q 014817          246 IDILKNLSSYPRGLKVGIKALFALCLVKQTRYKA--VAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAGCAEFAE  322 (418)
Q Consensus       246 v~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i--~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~  322 (418)
                      ..++.+.  ++.++..+.|+|+++..+.++..+.  .+-=....++.+..+++..++|.+..+|+||..+ .+....+++
T Consensus       467 ~s~~~~~--~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~~svdfll~  544 (678)
T KOG1293|consen  467 ESMLTDP--DFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSRKSVDFLLE  544 (678)
T ss_pred             HHHhcCC--CchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcHHHHHHHHH
Confidence            9999999  8999999999999999887755444  2333344567777888999999999999999965 344444444


Q ss_pred             ccC-ChHHHHHH--HhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC-------CCHHHHHHHHHHH
Q 014817          323 HAL-TVPLLVKT--ILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD-------CTDRAKRKAQLLL  392 (418)
Q Consensus       323 ~~g-~i~~Lv~~--l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~~~~~~A~~~L  392 (418)
                      .-+ .+..+...  +..+++-.-+.-...+..+...+.+.+.  ..+|.++.++..-...       ......-++.|.+
T Consensus       545 ~~~~~ld~i~l~lk~a~~~pi~ie~~~~~~~l~~~~d~~~~~--am~~~fk~lvl~~e~~~n~~q~s~~~qls~~~~~~i  622 (678)
T KOG1293|consen  545 KFKDVLDKIDLQLKIAIGSPILIEFLAKKMRLLNPLDTQQKK--AMEGIFKILVLLAEVNENKKQLSIEQQLSLNIMSEI  622 (678)
T ss_pred             hhhHHHHHHHHHHhhccCCceehhhHHHHHHhccchhHHHHH--HHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            212 11111111  2224554444444443333333333333  3355555554433221       1233445555665


Q ss_pred             HHHHh
Q 014817          393 KLLRD  397 (418)
Q Consensus       393 ~~l~~  397 (418)
                      -++..
T Consensus       623 inl~~  627 (678)
T KOG1293|consen  623 INLTT  627 (678)
T ss_pred             HhccC
Confidence            55544

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.50  E-value=1.6e-07  Score=86.16  Aligned_cols=61  Identities=20%  Similarity=0.369  Sum_probs=45.6

Q ss_pred             CcccCcCcccc-ccCCe----ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC----CcccHHHHHH
Q 014817           16 YHFRCPISLEL-MCDPV----TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT----LIPNHTLRRL   76 (418)
Q Consensus        16 ~~~~Cpi~~~~-~~dPv----~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~----l~~n~~L~~~   76 (418)
                      ++..||+|+.- +..|-    +.+|||+||++||..+|..+...||.|+.++....    ..++..+.+-
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekE   71 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKE   71 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHH
Confidence            35679999983 44553    33799999999999988877889999999987655    4444444443

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.44  E-value=4.4e-06  Score=66.77  Aligned_cols=153  Identities=15%  Similarity=0.114  Sum_probs=126.7

Q ss_pred             hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHH
Q 014817          239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCA  318 (418)
Q Consensus       239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~  318 (418)
                      .|-+..||.=.++.. +.+.++....-|.|.+-..-|-..+.+.++++..+.-|...+..+++.+.+.|.|||-+..+.+
T Consensus        15 l~Ylq~LV~efq~tt-~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~   93 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTT-NIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHHhc-cHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHH
Confidence            456778888777765 8899999999999999999999999999999999999999899999999999999999999999


Q ss_pred             HHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817          319 EFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL  394 (418)
Q Consensus       319 ~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  394 (418)
                      .|++ ++++|.++..+++.....--.|+.++..|+.+....+.++..-.++.-+.+.-.+- +...+--|...|..
T Consensus        94 ~I~e-a~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r~~~s~-s~~~rnLa~~fl~~  167 (173)
T KOG4646|consen   94 FIRE-ALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQRWRESK-SHDERNLASAFLDK  167 (173)
T ss_pred             HHHH-hcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHHHHHHh-hHHHHHHHHHHHHh
Confidence            9999 59999999999988888889999999999998888888877766666555544333 44444444444443

>PHA02926 zinc finger-like protein; Provisional

Probab=98.42  E-value=1.9e-07  Score=80.44  Aligned_cols=51  Identities=18%  Similarity=0.420  Sum_probs=40.4

Q ss_pred             CCCCcccCcCccccccC---------CeecCCCCcccHHHHHHHHHcC-----CCCCCCCCCCCC
Q 014817           13 QIPYHFRCPISLELMCD---------PVTVCTGQTYDRPSIESWVATG-----NTTCPVTRSPLT   63 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~d---------Pv~~~~g~~~~r~~i~~~~~~~-----~~~cp~~~~~l~   63 (418)
                      ....+..|+||++...+         +++.+|||+||..||.+|.+..     ...||.|+..+.
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            34557789999998744         4566899999999999998742     345999998875

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.42  E-value=3.3e-05  Score=79.08  Aligned_cols=254  Identities=17%  Similarity=0.162  Sum_probs=176.2

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE  184 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~  184 (418)
                      +.+.+.+.++++  .-|..|+-++.++.+.++..   +... .++.+.++|.+.       ++.|+..|+.++..+..++
T Consensus       117 ~~v~~ll~~~~~--~VRk~A~~~l~~i~~~~p~~---~~~~-~~~~l~~lL~d~-------~~~V~~~a~~~l~~i~~~~  183 (526)
T PF01602_consen  117 PDVIKLLSDPSP--YVRKKAALALLKIYRKDPDL---VEDE-LIPKLKQLLSDK-------DPSVVSAALSLLSEIKCND  183 (526)
T ss_dssp             HHHHHHHHSSSH--HHHHHHHHHHHHHHHHCHCC---HHGG-HHHHHHHHTTHS-------SHHHHHHHHHHHHHHHCTH
T ss_pred             HHHHHHhcCCch--HHHHHHHHHHHHHhccCHHH---HHHH-HHHHHhhhccCC-------cchhHHHHHHHHHHHccCc
Confidence            345555555433  45678999999998765542   2223 689999999766       6899999999999881122


Q ss_pred             hHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH
Q 014817          185 TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK  264 (418)
Q Consensus       185 ~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~  264 (418)
                      ....  -.-...+..|.+++...++-.+.....+|..+   ...+.....-   ...++.+..++++.  ++.+.-.+..
T Consensus       184 ~~~~--~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~---~~~~~~~~~~---~~~i~~l~~~l~s~--~~~V~~e~~~  253 (526)
T PF01602_consen  184 DSYK--SLIPKLIRILCQLLSDPDPWLQIKILRLLRRY---APMEPEDADK---NRIIEPLLNLLQSS--SPSVVYEAIR  253 (526)
T ss_dssp             HHHT--THHHHHHHHHHHHHTCCSHHHHHHHHHHHTTS---TSSSHHHHHH---HHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             chhh--hhHHHHHHHhhhcccccchHHHHHHHHHHHhc---ccCChhhhhH---HHHHHHHHHHhhcc--ccHHHHHHHH
Confidence            1111  11233455566666778899999999999888   4332211110   35788899999877  7899999999


Q ss_pred             HHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHh-cCChHHHH
Q 014817          265 ALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTIL-KISDRATE  343 (418)
Q Consensus       265 aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~-~~~~~~~~  343 (418)
                      ++.++.....     .-..+++.|+.+|.+.+.+++-.++..|..++...  ...+. +   ....+..+. +.+..++.
T Consensus       254 ~i~~l~~~~~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~--~~~v~-~---~~~~~~~l~~~~d~~Ir~  322 (526)
T PF01602_consen  254 LIIKLSPSPE-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN--PPAVF-N---QSLILFFLLYDDDPSIRK  322 (526)
T ss_dssp             HHHHHSSSHH-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC--HHHHG-T---HHHHHHHHHCSSSHHHHH
T ss_pred             HHHHhhcchH-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhccc--chhhh-h---hhhhhheecCCCChhHHH
Confidence            9998887666     44558899999999888889999999999998644  22222 1   233444566 68889999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          344 YAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       344 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      .++.+|..++.  ++....     +++.|...+...++...++.+...+..++...
T Consensus       323 ~~l~lL~~l~~--~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~  371 (526)
T PF01602_consen  323 KALDLLYKLAN--ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAEKF  371 (526)
T ss_dssp             HHHHHHHHH----HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhccc--ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHhcc
Confidence            99999999996  444444     67888888854437778999888888888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=6.2e-08  Score=88.74  Aligned_cols=67  Identities=24%  Similarity=0.356  Sum_probs=57.5

Q ss_pred             CCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCC-CCCCCcccHHHHHHHHHH
Q 014817           14 IPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPL-TDFTLIPNHTLRRLIQDW   80 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l-~~~~l~~n~~L~~~i~~~   80 (418)
                      +-.+|.||||+++++-.++. .|+|.||+.||-+-+..++..||.|++.+ +...+.++.....+|.+.
T Consensus        40 ~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i  108 (381)
T KOG0311|consen   40 FDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKI  108 (381)
T ss_pred             hhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHH
Confidence            34568999999999999999 59999999999999999899999999998 567777777777776664

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.34  E-value=4e-07  Score=59.33  Aligned_cols=41  Identities=20%  Similarity=0.456  Sum_probs=35.2

Q ss_pred             cCcCccccc---cCCeecCCCCcccHHHHHHHHHcCCCCCCCCCC
Q 014817           19 RCPISLELM---CDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS   60 (418)
Q Consensus        19 ~Cpi~~~~~---~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~   60 (418)
                      .|++|.+.+   +.|++++|||+||..|+.++. .....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            489999999   467888999999999999998 44678999974

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.33  E-value=8.6e-06  Score=77.81  Aligned_cols=176  Identities=16%  Similarity=0.125  Sum_probs=140.2

Q ss_pred             HhhcccCCchHHHHHHhcCCCHHH--HHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHH
Q 014817          188 MEIASDADKITSLSSLLFHSSIEV--RVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKA  265 (418)
Q Consensus       188 ~~~i~~~g~i~~Lv~~L~~~~~~~--~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~a  265 (418)
                      ...|...|++..|++++...+.+.  |..++.+|..+.    ..+|++.++. .| +..++.+.+... .++.....+..
T Consensus       173 CD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~----~aeN~d~va~-~~-~~~Il~lAK~~e-~~e~aR~~~~i  245 (832)
T KOG3678|consen  173 CDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQIL----VAENRDRVAR-IG-LGVILNLAKERE-PVELARSVAGI  245 (832)
T ss_pred             hhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHH----hhhhhhHHhh-cc-chhhhhhhhhcC-cHHHHHHHHHH
Confidence            445667799999999999987555  889999999983    4566777765 33 555555555442 57888999999


Q ss_pred             HHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh--cCHhHHHHHHhccCChHHHHHHHhcCChHHH
Q 014817          266 LFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC--RIPAGCAEFAEHALTVPLLVKTILKISDRAT  342 (418)
Q Consensus       266 L~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~--~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~  342 (418)
                      |.++..+. +.+.+++++|+++.++--....++.+...++-+|.|++  .+.+++..+++. .+-+-|..+-.+.++..+
T Consensus       246 l~~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveK-r~~EWLF~LA~skDel~R  324 (832)
T KOG3678|consen  246 LEHMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEK-RAAEWLFPLAFSKDELLR  324 (832)
T ss_pred             HHHHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHh-hhhhhhhhhhcchHHHHH
Confidence            99999875 58899999999999998888888999999999999988  566888899985 666777776677788889


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHhcChHHHH
Q 014817          343 EYAAGALAALCSASERCQRDAVSAGVLTQL  372 (418)
Q Consensus       343 ~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L  372 (418)
                      -+|+-++..|+. +.+.-.++.+.|-+...
T Consensus       325 ~~AClAV~vlat-~KE~E~~VrkS~TlaLV  353 (832)
T KOG3678|consen  325 LHACLAVAVLAT-NKEVEREVRKSGTLALV  353 (832)
T ss_pred             HHHHHHHhhhhh-hhhhhHHHhhccchhhh
Confidence            999999999888 77777778777754433

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.29  E-value=0.00011  Score=69.80  Aligned_cols=223  Identities=12%  Similarity=0.056  Sum_probs=164.8

Q ss_pred             hhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC--CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHH
Q 014817          167 PELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH--SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEG  244 (418)
Q Consensus       167 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~  244 (418)
                      .+-...|+.+|..+..-+ +.|-.++.++++..++..|.+  .+-.++...+..++-|   +.++...+.+ ...+.|+.
T Consensus       171 ~~~~~~~~rcLQ~ll~~~-eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlL---tFn~~~ae~~-~~~~li~~  245 (442)
T KOG2759|consen  171 NDYIQFAARCLQTLLRVD-EYRYAFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLL---TFNPHAAEKL-KRFDLIQD  245 (442)
T ss_pred             CchHHHHHHHHHHHhcCc-chhheeeecCcchhhHHHHhccCcchhHHHHHHHHHHHh---hcCHHHHHHH-hhccHHHH
Confidence            444556777888777777 789999999999999999943  4688899999999999   8899888888 45789999


Q ss_pred             HHHHhhcCCCChhhhHHHHHHHHHHccccc-------cHHHHHHcCchHHHHHHhcCC---CcccHHH-------HHHHH
Q 014817          245 VIDILKNLSSYPRGLKVGIKALFALCLVKQ-------TRYKAVAAGAAETLVDRLADF---DKCDAER-------ALATV  307 (418)
Q Consensus       245 Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-------n~~~i~~~G~v~~Lv~lL~~~---~~~~~~~-------a~~~L  307 (418)
                      |.++++... .+.+.+-.+.++.|+....+       ....|+..++ +.-++.|...   |..+.+.       .-.-.
T Consensus       246 L~~Ivk~~~-KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v-~k~l~~L~~rkysDEDL~~di~~L~e~L~~sv  323 (442)
T KOG2759|consen  246 LSDIVKEST-KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKV-LKTLQSLEERKYSDEDLVDDIEFLTEKLKNSV  323 (442)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCc-hHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence            999999875 67889999999999987652       3344555554 4445555422   3333322       12222


Q ss_pred             HHHhcCHhHHHHHHh------------------------c-cCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHH
Q 014817          308 ELLCRIPAGCAEFAE------------------------H-ALTVPLLVKTILK-ISDRATEYAAGALAALCSASERCQR  361 (418)
Q Consensus       308 ~~L~~~~~~~~~i~~------------------------~-~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~  361 (418)
                      ..|++-++...++..                        . -..+..|+++|.. .++..-..|+.=+....+..|+-+.
T Consensus       324 q~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~yP~gk~  403 (442)
T KOG2759|consen  324 QDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHYPEGKA  403 (442)
T ss_pred             HhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhCchHhH
Confidence            334443344333322                        1 1256788888877 4577888888888888888999999


Q ss_pred             HHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          362 DAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       362 ~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      .+.+.|+=+.++++|.+. ++++|..|..+++.|=.
T Consensus       404 vv~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  404 VVEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHh
Confidence            999999999999999888 99999999988887644

>PF05536 Neurochondrin: Neurochondrin

Probab=98.27  E-value=0.00014  Score=74.09  Aligned_cols=245  Identities=15%  Similarity=0.057  Sum_probs=161.5

Q ss_pred             HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhH---HHhhcccCCchHHHHHHhcCC-------CHHHHHHHHH
Q 014817          148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETE---CMEIASDADKITSLSSLLFHS-------SIEVRVNSAA  217 (418)
Q Consensus       148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~---~~~~i~~~g~i~~Lv~~L~~~-------~~~~~~~a~~  217 (418)
                      +..-+.+|+..+       .+-+-.++..+.++..+++.   .++.|.++=+.+.|-++|+++       ....+..|+.
T Consensus         7 l~~c~~lL~~~~-------D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~Lavs   79 (543)
T PF05536_consen    7 LEKCLSLLKSAD-------DTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVS   79 (543)
T ss_pred             HHHHHHHhccCC-------cHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHH
Confidence            444556676553       12244455555566655432   244566766678889999873       3677788999


Q ss_pred             HHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCc
Q 014817          218 LIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDK  297 (418)
Q Consensus       218 ~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~  297 (418)
                      +|..+   +..++.+..= .-.+-||.|++.+.+.+ +.++...+..+|..++.+++.+..+++.|+|+.|.+.+.+ ..
T Consensus        80 vL~~f---~~~~~~a~~~-~~~~~IP~Lle~l~~~s-~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~  153 (543)
T PF05536_consen   80 VLAAF---CRDPELASSP-QMVSRIPLLLEILSSSS-DLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QS  153 (543)
T ss_pred             HHHHH---cCChhhhcCH-HHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-Cc
Confidence            99999   6666654222 11357999999999883 3499999999999999999999999999999999999987 45


Q ss_pred             ccHHHHHHHHHHHhcCHhHHHHHHhccCChHHH----HHHHhcCChHHHHHHHHHHHHHhcCCHH-----HHHHHHhcCh
Q 014817          298 CDAERALATVELLCRIPAGCAEFAEHALTVPLL----VKTILKISDRATEYAAGALAALCSASER-----CQRDAVSAGV  368 (418)
Q Consensus       298 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~L----v~~l~~~~~~~~~~A~~~L~~l~~~~~~-----~~~~~~~~g~  368 (418)
                      ...+.++.+|.+++..... +..-++...+..+    -..+.......+-..+..|.++-...+.     ....-+-..+
T Consensus       154 ~~~E~Al~lL~~Lls~~~~-~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l  232 (543)
T PF05536_consen  154 FQMEIALNLLLNLLSRLGQ-KSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDL  232 (543)
T ss_pred             chHHHHHHHHHHHHHhcch-hhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHH
Confidence            6689999999998854331 1111222223333    3333333444455566666665543321     1222333446


Q ss_pred             HHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCCCCCCCC
Q 014817          369 LTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNS  407 (418)
Q Consensus       369 i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~  407 (418)
                      ...|..+|++.-++..|..|..+...|..... -.|.+.
T Consensus       233 ~~gl~~iL~sr~~~~~R~~al~Laa~Ll~~~G-~~wl~~  270 (543)
T PF05536_consen  233 RKGLRDILQSRLTPSQRDPALNLAASLLDLLG-PEWLFA  270 (543)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhC-hHhhcC
Confidence            66777778777689999999998888888743 334444

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=4.8e-07  Score=79.96  Aligned_cols=52  Identities=17%  Similarity=0.315  Sum_probs=45.8

Q ss_pred             CCcccCcCccccccCCeecCCCCcccHHHHHH-HHHcCCCCCCCCCCCCCCCC
Q 014817           15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIES-WVATGNTTCPVTRSPLTDFT   66 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~-~~~~~~~~cp~~~~~l~~~~   66 (418)
                      ..+|.|+||.+.+.+|+.++|||.||-.||-. |..+...+||.|++...+..
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            35899999999999999999999999999999 88776788999998765433

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.23  E-value=8.6e-06  Score=65.11  Aligned_cols=131  Identities=17%  Similarity=0.141  Sum_probs=109.4

Q ss_pred             CCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817          194 ADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV  272 (418)
Q Consensus       194 ~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~  272 (418)
                      -+.+..||.-.+. .+.+.++..+.-|.|+   +.++-|-..+.. ..+++.++..|...  +....+.+...|.|+|..
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANF---AYDP~Nys~Lrq-l~vLdlFvdsl~e~--ne~LvefgIgglCNlC~d   88 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANF---AYDPINYSHLRQ-LDVLDLFVDSLEEQ--NELLVEFGIGGLCNLCLD   88 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhh---ccCcchHHHHHH-hhHHHHHHHHhhcc--cHHHHHHhHHHHHhhccC
Confidence            3567777776654 4789999999999999   888888888865 67999999999998  899999999999999999


Q ss_pred             cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH-hHHHHHHhccCChHHHHHHHh
Q 014817          273 KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP-AGCAEFAEHALTVPLLVKTIL  335 (418)
Q Consensus       273 ~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~  335 (418)
                      ..|..-|.++|++|.++..+.++....+-.++.+|..|+..+ ..|..+..     |.+|..+.
T Consensus        89 ~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~-----p~Vv~~v~  147 (173)
T KOG4646|consen   89 KTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLS-----PAVVRTVQ  147 (173)
T ss_pred             hHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhcc-----HHHHHHHH
Confidence            999999999999999999999988888889999999998543 45555554     45555553

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=0.00053  Score=72.67  Aligned_cols=261  Identities=14%  Similarity=0.101  Sum_probs=160.2

Q ss_pred             HHHHHHHHHhhhcChh-hhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhc--ccCCchH
Q 014817          122 LSALRRLRGLARDSDK-NRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIA--SDADKIT  198 (418)
Q Consensus       122 ~~Al~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i--~~~g~i~  198 (418)
                      ..++..|-.++...+. -+..+.  .++..-+.+..+..-     +..++..|+..|..++.......+..  ...-.++
T Consensus       224 ~~~l~~l~El~e~~pk~l~~~l~--~ii~~~l~Ia~n~~l-----~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~  296 (1075)
T KOG2171|consen  224 KSALEALIELLESEPKLLRPHLS--QIIQFSLEIAKNKEL-----ENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVP  296 (1075)
T ss_pred             HHHHHHHHHHHhhchHHHHHHHH--HHHHHHHHHhhcccc-----cHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHH
Confidence            4566666666654332 222222  234444455444321     56789999998887765532222211  1233455


Q ss_pred             HHHHHhcCCCH----------------HHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817          199 SLSSLLFHSSI----------------EVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG  262 (418)
Q Consensus       199 ~Lv~~L~~~~~----------------~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a  262 (418)
                      .++.++.....                .-...|..+|--++   .+=..+...   .=.++.+-.+|.+.  +..-+.+|
T Consensus       297 ~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA---~~L~g~~v~---p~~~~~l~~~l~S~--~w~~R~Aa  368 (1075)
T KOG2171|consen  297 VLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLA---LHLGGKQVL---PPLFEALEAMLQST--EWKERHAA  368 (1075)
T ss_pred             HHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHH---hcCChhheh---HHHHHHHHHHhcCC--CHHHHHHH
Confidence            55555543211                12344555666662   221111111   22455666677777  89999999


Q ss_pred             HHHHHHHcccccc-HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC--HhHHHHHHhccCChHHHHHHHhc-CC
Q 014817          263 IKALFALCLVKQT-RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI--PAGCAEFAEHALTVPLLVKTILK-IS  338 (418)
Q Consensus       263 ~~aL~~L~~~~~n-~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~~l~~-~~  338 (418)
                      +.+|..++..... -...+ ..+++.++..|.++++.++-.|+.++..++.+  ++...+..+  -.++.|+..+.+ .+
T Consensus       369 L~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e--~l~~aL~~~ld~~~~  445 (1075)
T KOG2171|consen  369 LLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHE--RLPPALIALLDSTQN  445 (1075)
T ss_pred             HHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHH--hccHHHHHHhcccCc
Confidence            9999999865432 11112 34778888888999999999999999999964  444444443  667788888877 78


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ++++.+|+.+|.|+....+...-.=.=-+.+.+++.+|..++++.+|+.+..+|...+.-.+
T Consensus       446 ~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~  507 (1075)
T KOG2171|consen  446 VRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQ  507 (1075)
T ss_pred             hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHh
Confidence            89999999999998873332221111135566344444444499999999999999888665

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.18  E-value=0.00011  Score=77.66  Aligned_cols=235  Identities=17%  Similarity=0.137  Sum_probs=148.1

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE  184 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~  184 (418)
                      +.+-.++.+.  +...|..|+-+|..++.+..+.-.... ..+++.++..|.++       ++.|+-.|+.+++.++.+-
T Consensus       351 ~~l~~~l~S~--~w~~R~AaL~Als~i~EGc~~~m~~~l-~~Il~~Vl~~l~Dp-------hprVr~AA~naigQ~stdl  420 (1075)
T KOG2171|consen  351 EALEAMLQST--EWKERHAALLALSVIAEGCSDVMIGNL-PKILPIVLNGLNDP-------HPRVRYAALNAIGQMSTDL  420 (1075)
T ss_pred             HHHHHHhcCC--CHHHHHHHHHHHHHHHcccHHHHHHHH-HHHHHHHHhhcCCC-------CHHHHHHHHHHHHhhhhhh
Confidence            4444555554  556678899999988866544332222 34667777777777       6899999999999998764


Q ss_pred             hHHHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHHHHHHHhhcCCCChhhhHHH
Q 014817          185 TECMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFEGVIDILKNLSSYPRGLKVG  262 (418)
Q Consensus       185 ~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a  262 (418)
                      ...-..-...-.++.|+..+.+. ++.++.+|+.+|.|+   +..-. +..+.- -.+.+++++.+|..+. ++.+++.+
T Consensus       421 ~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf---~E~~~-~~~l~pYLd~lm~~~l~~L~~~~-~~~v~e~v  495 (1075)
T KOG2171|consen  421 QPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNF---SEECD-KSILEPYLDGLMEKKLLLLLQSS-KPYVQEQA  495 (1075)
T ss_pred             cHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHH---HHhCc-HHHHHHHHHHHHHHHHHHHhcCC-chhHHHHH
Confidence            32222223345577888888764 789999999999999   43332 233321 1466775555555443 78999999


Q ss_pred             HHHHHHHccccccHHHHHHcCchHHHHHHhcCCC-cccHHHHHHHHHHHh--cCHhHHHHHHhccC-ChHHHHHH---Hh
Q 014817          263 IKALFALCLVKQTRYKAVAAGAAETLVDRLADFD-KCDAERALATVELLC--RIPAGCAEFAEHAL-TVPLLVKT---IL  335 (418)
Q Consensus       263 ~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~-~~~~~~a~~~L~~L~--~~~~~~~~i~~~~g-~i~~Lv~~---l~  335 (418)
                      +.+|...+..-+..-.---.-.+|.|...|...+ .+.++..-.++..++  ...-||+++...++ .+..+..+   ..
T Consensus       496 vtaIasvA~AA~~~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~  575 (1075)
T KOG2171|consen  496 VTAIASVADAAQEKFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQ  575 (1075)
T ss_pred             HHHHHHHHHHHhhhhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccch
Confidence            9999999876554433333457888888887654 444443333333332  23456666665432 23333333   22


Q ss_pred             cCChHHHHHHHHHHHHHhc
Q 014817          336 KISDRATEYAAGALAALCS  354 (418)
Q Consensus       336 ~~~~~~~~~A~~~L~~l~~  354 (418)
                      ..+...++.-+....++|+
T Consensus       576 ~~dd~~~sy~~~~warmc~  594 (1075)
T KOG2171|consen  576 DDDDPLRSYMIAFWARMCR  594 (1075)
T ss_pred             hhccccHHHHHHHHHHHHH
Confidence            2455667777777788887

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.17  E-value=0.0004  Score=72.54  Aligned_cols=243  Identities=16%  Similarity=0.160  Sum_probs=166.7

Q ss_pred             hHHHHHHHHHhhhcChhhhhHHhh----cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCc
Q 014817          121 RLSALRRLRGLARDSDKNRSLISS----HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADK  196 (418)
Q Consensus       121 ~~~Al~~L~~l~~~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~  196 (418)
                      ..-++.+|+++.+.+++....+..    .|-.+.+..+|....      ++.++..|+.++..+..+. ++-..+++.|.
T Consensus      1742 v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~------~~~iq~LaL~Vi~~~Tan~-~Cv~~~a~~~v 1814 (2235)
T KOG1789|consen 1742 VLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRK------HPKLQILALQVILLATANK-ECVTDLATCNV 1814 (2235)
T ss_pred             HHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcC------CchHHHHHHHHHHHHhccc-HHHHHHHhhhH
Confidence            456899999999888855544432    477888888887664      5789999999988877666 88999999999


Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHH-------
Q 014817          197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFAL-------  269 (418)
Q Consensus       197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L-------  269 (418)
                      +..|+.+|.+. +..|+.+..+|..|   +.+.+....-.. .|++.-+..++-... +++.+..++..+..|       
T Consensus      1815 L~~LL~lLHS~-PS~R~~vL~vLYAL---~S~~~i~keA~~-hg~l~yil~~~c~~~-~~QqRAqaAeLlaKl~Adkl~G 1888 (2235)
T KOG1789|consen 1815 LTTLLTLLHSQ-PSMRARVLDVLYAL---SSNGQIGKEALE-HGGLMYILSILCLTN-SDQQRAQAAELLAKLQADKLTG 1888 (2235)
T ss_pred             HHHHHHHHhcC-hHHHHHHHHHHHHH---hcCcHHHHHHHh-cCchhhhhHHHhccC-cHHHHHHHHHHHHHhhhccccC
Confidence            99999998554 77889999999999   444444443334 566666665554432 444444555444444       


Q ss_pred             --------------------------------------------------------------------------------
Q 014817          270 --------------------------------------------------------------------------------  269 (418)
Q Consensus       270 --------------------------------------------------------------------------------  269 (418)
                                                                                                      
T Consensus      1889 PrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg 1968 (2235)
T KOG1789|consen 1889 PRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAG 1968 (2235)
T ss_pred             CceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcc
Confidence                                                                                            


Q ss_pred             --------------------------------------------c--------------------cccc-cHHHHHHcCc
Q 014817          270 --------------------------------------------C--------------------LVKQ-TRYKAVAAGA  284 (418)
Q Consensus       270 --------------------------------------------~--------------------~~~~-n~~~i~~~G~  284 (418)
                                                                  +                    .... -...+-..|.
T Consensus      1969 ~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip~LGy 2048 (2235)
T KOG1789|consen 1969 TSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLPSLGY 2048 (2235)
T ss_pred             hhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCCCccc
Confidence                                                        0                    0000 0011112355


Q ss_pred             hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHH
Q 014817          285 AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDA  363 (418)
Q Consensus       285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~  363 (418)
                      +|.++..+...+..+-..|+.+|..|+.+.-..+++... .++..+++.|+..- ..-.-|+.+|-.+.. ...+....+
T Consensus      2049 lPK~~~Am~~~n~s~P~SaiRVlH~Lsen~~C~~AMA~l-~~i~~~m~~mkK~~-~~~GLA~EalkR~~~r~~~eLVAQ~ 2126 (2235)
T KOG1789|consen 2049 LPKFCTAMCLQNTSAPRSAIRVLHELSENQFCCDAMAQL-PCIDGIMKSMKKQP-SLMGLAAEALKRLMKRNTGELVAQM 2126 (2235)
T ss_pred             hHHHHHHHHhcCCcCcHHHHHHHHHHhhccHHHHHHhcc-ccchhhHHHHHhcc-hHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            555555555444444567899999999988888888875 67777888876532 223478888888777 445667788


Q ss_pred             HhcChHHHHHHHHhh
Q 014817          364 VSAGVLTQLLLLVQS  378 (418)
Q Consensus       364 ~~~g~i~~L~~ll~~  378 (418)
                      .+.|.++.|+.+|..
T Consensus      2127 LK~gLvpyLL~LLd~ 2141 (2235)
T KOG1789|consen 2127 LKCGLVPYLLQLLDS 2141 (2235)
T ss_pred             hccCcHHHHHHHhcc
Confidence            999999999999964

>PF05536 Neurochondrin: Neurochondrin

Probab=98.17  E-value=0.00016  Score=73.65  Aligned_cols=202  Identities=15%  Similarity=0.107  Sum_probs=143.4

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChh---hhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDK---NRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV  178 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~  178 (418)
                      ..+++.++.|++.+ |. +++.++--+.++++.++.   .++.+.++=+.+.|-++|.+....+.......+..|+.+|.
T Consensus         5 ~~l~~c~~lL~~~~-D~-~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~   82 (543)
T PF05536_consen    5 ASLEKCLSLLKSAD-DT-ERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA   82 (543)
T ss_pred             HHHHHHHHHhccCC-cH-HHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            46888999999876 43 589999999999987664   34456776668999999987543222224567888999999


Q ss_pred             cCCCChhHHHhhcccCCchHHHHHHhcCCCH-HHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChh
Q 014817          179 MFPLTETECMEIASDADKITSLSSLLFHSSI-EVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPR  257 (418)
Q Consensus       179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~-~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  257 (418)
                      .++.++ +....----+-||.|++++.+++. ++...+..+|..+   +.+++.+..+.. .|+++.|++.+.+.   +.
T Consensus        83 ~f~~~~-~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~I---as~~~G~~aLl~-~g~v~~L~ei~~~~---~~  154 (543)
T PF05536_consen   83 AFCRDP-ELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAI---ASSPEGAKALLE-SGAVPALCEIIPNQ---SF  154 (543)
T ss_pred             HHcCCh-hhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHH---HcCcHhHHHHHh-cCCHHHHHHHHHhC---cc
Confidence            998855 432221123679999999988776 9999999999999   788888888876 79999999999985   67


Q ss_pred             hhHHHHHHHHHHccccccHHHHHH----cCchHHHHHHhcCCCcccHHHHHHHHHHHhcC
Q 014817          258 GLKVGIKALFALCLVKQTRYKAVA----AGAAETLVDRLADFDKCDAERALATVELLCRI  313 (418)
Q Consensus       258 ~~~~a~~aL~~L~~~~~n~~~i~~----~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  313 (418)
                      ..+.|+.+|.++.........--.    ...++.+-..........+-..+..|..+-..
T Consensus       155 ~~E~Al~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~  214 (543)
T PF05536_consen  155 QMEIALNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPR  214 (543)
T ss_pred             hHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCc
Confidence            788999999998765431111111    12344444444444455566677777666543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.14  E-value=0.0004  Score=66.00  Aligned_cols=237  Identities=16%  Similarity=0.042  Sum_probs=164.0

Q ss_pred             HHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhH
Q 014817          107 LLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETE  186 (418)
Q Consensus       107 lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~  186 (418)
                      |-..++++.++. -..-+++.|..+... ++.|..++.+.++..++..+.+...     +-++|-+.+-++..|..+. .
T Consensus       161 l~~~l~~~~~~~-~~~~~~rcLQ~ll~~-~eyR~~~v~adg~~~l~~~l~s~~~-----~~QlQYqsifciWlLtFn~-~  232 (442)
T KOG2759|consen  161 LKEQLQSSTNND-YIQFAARCLQTLLRV-DEYRYAFVIADGVSLLIRILASTKC-----GFQLQYQSIFCIWLLTFNP-H  232 (442)
T ss_pred             HHHHHhccCCCc-hHHHHHHHHHHHhcC-cchhheeeecCcchhhHHHHhccCc-----chhHHHHHHHHHHHhhcCH-H
Confidence            333444433222 356788999999875 5789999999999999999953322     6789999999999999887 4


Q ss_pred             HHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccch----hhhhHhhchhhhHHHHHHHhhcCC-CChhhhH
Q 014817          187 CMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQ----ELRAQISNLDEIFEGVIDILKNLS-SYPRGLK  260 (418)
Q Consensus       187 ~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~----~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~  260 (418)
                      ..+.+...+.|+.|+.++++. ...+.+..+.+++|+.+...+.    +.+..+.  .+.++.-++.|+... +|++...
T Consensus       233 ~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv--~~~v~k~l~~L~~rkysDEDL~~  310 (442)
T KOG2759|consen  233 AAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMV--LCKVLKTLQSLEERKYSDEDLVD  310 (442)
T ss_pred             HHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHH--hcCchHHHHHHHhcCCCcHHHHH
Confidence            456667789999999999876 4667778899999997322122    3333343  234566666665432 2444333


Q ss_pred             HHHHHH-------HHHccc------------------------cccHHHHHHc--CchHHHHHHhcCC-CcccHHHHHHH
Q 014817          261 VGIKAL-------FALCLV------------------------KQTRYKAVAA--GAAETLVDRLADF-DKCDAERALAT  306 (418)
Q Consensus       261 ~a~~aL-------~~L~~~------------------------~~n~~~i~~~--G~v~~Lv~lL~~~-~~~~~~~a~~~  306 (418)
                      ..-..-       ..|++.                        .+|..++-+.  -.+..|+.+|... |+.+..-|+.=
T Consensus       311 di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~D  390 (442)
T KOG2759|consen  311 DIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHD  390 (442)
T ss_pred             HHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhh
Confidence            322221       222221                        2355555553  4788899999754 57777777777


Q ss_pred             HHHHh-cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          307 VELLC-RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       307 L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      +.... .+|+++..+... ||=..++++|.+++++++-+|+.++..+-.
T Consensus       391 Ige~Vr~yP~gk~vv~k~-ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  391 IGEYVRHYPEGKAVVEKY-GGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHHHHhCchHhHHHHHh-chHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            77666 468899888885 999999999999999999999999887643

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.13  E-value=0.00046  Score=66.81  Aligned_cols=254  Identities=15%  Similarity=0.074  Sum_probs=175.1

Q ss_pred             HHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC
Q 014817          127 RLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH  206 (418)
Q Consensus       127 ~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~  206 (418)
                      .|-.+.+..+.-|..+.-.-..+.+..++-++       +.+++..+..+++.+..+. +.-..+.+-+.--.++.-|..
T Consensus         6 ~Lv~l~~~~p~l~~~~~~~~~~~~i~~~lL~~-------~~~vraa~yRilRy~i~d~-~~l~~~~~l~id~~ii~SL~~   77 (371)
T PF14664_consen    6 DLVDLLKRHPTLKYDLVLSFFGERIQCMLLSD-------SKEVRAAGYRILRYLISDE-ESLQILLKLHIDIFIIRSLDR   77 (371)
T ss_pred             HHHHHHHhCchhhhhhhHHHHHHHHHHHHCCC-------cHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCchhhHhhhcc
Confidence            34444455565565555444555555555444       4789999999998887776 556666666666666777755


Q ss_pred             C--CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCc
Q 014817          207 S--SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGA  284 (418)
Q Consensus       207 ~--~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~  284 (418)
                      .  +..-|+.|.+.++.+.   ..+.....+  ..|++..++.+.++.  +...+..++.+|..|+..+.  ..+++.||
T Consensus        78 ~~~~~~ER~QALkliR~~l---~~~~~~~~~--~~~vvralvaiae~~--~D~lr~~cletL~El~l~~P--~lv~~~gG  148 (371)
T PF14664_consen   78 DNKNDVEREQALKLIRAFL---EIKKGPKEI--PRGVVRALVAIAEHE--DDRLRRICLETLCELALLNP--ELVAECGG  148 (371)
T ss_pred             cCCChHHHHHHHHHHHHHH---HhcCCcccC--CHHHHHHHHHHHhCC--chHHHHHHHHHHHHHHhhCH--HHHHHcCC
Confidence            4  4667889999999994   443344455  268999999999997  78899999999999987653  45678999


Q ss_pred             hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcC-------Ch--HHHHHHHHHHHHHhcC
Q 014817          285 AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI-------SD--RATEYAAGALAALCSA  355 (418)
Q Consensus       285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~-------~~--~~~~~A~~~L~~l~~~  355 (418)
                      +..|++.+.++..++.+..+.++..+..++..|..+..+ --+..++.-+...       +.  ..-..+..++..+=+.
T Consensus       149 ~~~L~~~l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~-~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lrs  227 (371)
T PF14664_consen  149 IRVLLRALIDGSFSISESLLDTLLYLLDSPRTRKYLRPG-FDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRS  227 (371)
T ss_pred             HHHHHHHHHhccHhHHHHHHHHHHHHhCCcchhhhhcCC-ccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhc
Confidence            999999998776668889999999999999999988763 3455555544332       11  1233444444444331


Q ss_pred             CHHHHHH-HHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          356 SERCQRD-AVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       356 ~~~~~~~-~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      =+-.... +-+..++..|+..|..+ ++++|+....++-.+-+..
T Consensus       228 W~GLl~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllrik  271 (371)
T PF14664_consen  228 WPGLLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLRIK  271 (371)
T ss_pred             CCceeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHCCC
Confidence            1111100 11125788899999888 8889999888888877753

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.13  E-value=0.00021  Score=71.12  Aligned_cols=269  Identities=17%  Similarity=0.094  Sum_probs=172.4

Q ss_pred             HHHHHHhhhcChhhhhHHhhcChHHHHHHHhhccc---ccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHH
Q 014817          125 LRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNI---NVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLS  201 (418)
Q Consensus       125 l~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~---~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv  201 (418)
                      +..|+-+.+ ++.+.+.+....++..|+++-.-..   ......+..+...|+.+|+|+.......|+.+.+.|..+.++
T Consensus         2 L~~LRiLsR-d~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~   80 (446)
T PF10165_consen    2 LETLRILSR-DPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLC   80 (446)
T ss_pred             HHHHHHHcc-CcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHH
Confidence            445555554 3455556666666777766651000   000002678999999999999988878899999999999999


Q ss_pred             HHhcCC-----CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC-------C--------CChhhhHH
Q 014817          202 SLLFHS-----SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL-------S--------SYPRGLKV  261 (418)
Q Consensus       202 ~~L~~~-----~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~-------~--------~~~~~~~~  261 (418)
                      +.|+..     +.+..-...++|+-+.  +...+.+..+....+++..|+..|...       .        .+......
T Consensus        81 ~~Lk~~~~~~~~~d~~Fl~~RLLFLlT--a~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~E  158 (446)
T PF10165_consen   81 ERLKNYSDSSQPSDVEFLDSRLLFLLT--ALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSE  158 (446)
T ss_pred             HHHHcccccCCChhHHHHHHHHHHHHh--cCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHH
Confidence            999887     7888899999999996  667777777766667888877766421       0        03345677


Q ss_pred             HHHHHHHHccccccHHHHHHcCchHHHHHHhcCC---------CcccHHHHHHHHHHHhcC-HhH-------HHHHH---
Q 014817          262 GIKALFALCLVKQTRYKAVAAGAAETLVDRLADF---------DKCDAERALATVELLCRI-PAG-------CAEFA---  321 (418)
Q Consensus       262 a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~---------~~~~~~~a~~~L~~L~~~-~~~-------~~~i~---  321 (418)
                      ++++++|+.........-.+.+.++.|+.++..-         .......++.+|.++--. ...       ...+.   
T Consensus       159 iLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~  238 (446)
T PF10165_consen  159 ILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEG  238 (446)
T ss_pred             HHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCC
Confidence            8899999976644333223355666666655311         123455666666666311 111       00000   


Q ss_pred             hccCChHHHHHHHhc-----CC---hHHHHHHHHHHHHHhcCCHHHHHHHHh----------------cChHHHHHHHHh
Q 014817          322 EHALTVPLLVKTILK-----IS---DRATEYAAGALAALCSASERCQRDAVS----------------AGVLTQLLLLVQ  377 (418)
Q Consensus       322 ~~~g~i~~Lv~~l~~-----~~---~~~~~~A~~~L~~l~~~~~~~~~~~~~----------------~g~i~~L~~ll~  377 (418)
                      .....+..|+++|..     ..   ...-..-+.+|.+++..+...|+.+..                ...-.+|++++.
T Consensus       239 ~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt  318 (446)
T PF10165_consen  239 DNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT  318 (446)
T ss_pred             CChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence            111245566666644     11   123345566667777765666665544                346778999997


Q ss_pred             hCCCHHHHHHHHHHHHHHHh
Q 014817          378 SDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       378 ~~~~~~~~~~A~~~L~~l~~  397 (418)
                      +. .+.+|+.++.+|-.|++
T Consensus       319 ~~-~~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  319 SP-DPQLKDAVAELLFVLCK  337 (446)
T ss_pred             CC-CchHHHHHHHHHHHHHh
Confidence            77 59999999999988886

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PTZ00429 beta-adaptin; Provisional

Probab=98.10  E-value=0.001  Score=69.93  Aligned_cols=254  Identities=15%  Similarity=0.031  Sum_probs=164.0

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +.+..|-+.|.+.+  ...+..|++.+-.........      ..+.+-+++++.+.       +.++++-..-.|.+++
T Consensus        32 ge~~ELr~~L~s~~--~~~kk~alKkvIa~mt~G~Dv------S~LF~dVvk~~~S~-------d~elKKLvYLYL~~ya   96 (746)
T PTZ00429         32 GEGAELQNDLNGTD--SYRKKAAVKRIIANMTMGRDV------SYLFVDVVKLAPST-------DLELKKLVYLYVLSTA   96 (746)
T ss_pred             chHHHHHHHHHCCC--HHHHHHHHHHHHHHHHCCCCc------hHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHc
Confidence            45666777777653  334567787766554332221      22456667777666       5677777666666666


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV  261 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  261 (418)
                      ...++. ..    -++..+.+=+.+.++.+|..|+++|.++   . .++    +.  .-+++++.+.+.+.  ++-+++.
T Consensus        97 ~~~pel-al----LaINtl~KDl~d~Np~IRaLALRtLs~I---r-~~~----i~--e~l~~~lkk~L~D~--~pYVRKt  159 (746)
T PTZ00429         97 RLQPEK-AL----LAVNTFLQDTTNSSPVVRALAVRTMMCI---R-VSS----VL--EYTLEPLRRAVADP--DPYVRKT  159 (746)
T ss_pred             ccChHH-HH----HHHHHHHHHcCCCCHHHHHHHHHHHHcC---C-cHH----HH--HHHHHHHHHHhcCC--CHHHHHH
Confidence            544221 12    2467778888889999999999988888   2 222    22  22667788888877  8999999


Q ss_pred             HHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817          262 GIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRA  341 (418)
Q Consensus       262 a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~  341 (418)
                      |+.++.+|...+.  ..+.+.|.++.|.++|.+.++.++.+|+.+|..+......+-.+ .+ +.+..|+..+..-++-.
T Consensus       160 Aalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l-~~-~~~~~Ll~~L~e~~EW~  235 (746)
T PTZ00429        160 AAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIES-SN-EWVNRLVYHLPECNEWG  235 (746)
T ss_pred             HHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHH-HH-HHHHHHHHHhhcCChHH
Confidence            9999999976544  23456788899999999989999999999999987543222222 22 44566666665556666


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          342 TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       342 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      |-..+.+|..-.-.+..   +  ...++..+...|++. ++.+.-.|.+++-.+..
T Consensus       236 Qi~IL~lL~~y~P~~~~---e--~~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~  285 (746)
T PTZ00429        236 QLYILELLAAQRPSDKE---S--AETLLTRVLPRMSHQ-NPAVVMGAIKVVANLAS  285 (746)
T ss_pred             HHHHHHHHHhcCCCCcH---H--HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcC
Confidence            66655555332211111   1  134566666777666 77777777777666653

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.10  E-value=0.0017  Score=62.18  Aligned_cols=241  Identities=14%  Similarity=0.109  Sum_probs=170.4

Q ss_pred             HHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh---------hHHHhhccc
Q 014817          123 SALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE---------TECMEIASD  193 (418)
Q Consensus       123 ~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~---------~~~~~~i~~  193 (418)
                      ..+..+..++.. |.--..+++.++++.|+.+|...       |.++....+..|..|.-.+         +..-..+++
T Consensus       103 d~IQ~mhvlAt~-PdLYp~lveln~V~slL~LLgHe-------NtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvd  174 (536)
T KOG2734|consen  103 DIIQEMHVLATM-PDLYPILVELNAVQSLLELLGHE-------NTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVD  174 (536)
T ss_pred             HHHHHHHhhhcC-hHHHHHHHHhccHHHHHHHhcCC-------CchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHh
Confidence            456677777654 66666799999999999999877       6788888888888875332         123556678


Q ss_pred             CCchHHHHHHhcCCC------HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHH
Q 014817          194 ADKITSLSSLLFHSS------IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALF  267 (418)
Q Consensus       194 ~g~i~~Lv~~L~~~~------~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~  267 (418)
                      .++++.||+-+..-+      .....++..++-|++  ...++.+..+++ .|.+.-|+.-+.....-..-...|...|.
T Consensus       175 g~vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv--~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLa  251 (536)
T KOG2734|consen  175 GQVLALLVQNVERLDESVKEEADGVHNTLAVVENLV--EVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILA  251 (536)
T ss_pred             ccHHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHH--hccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHH
Confidence            899999988776533      333456778888886  566777777766 57777666644433113345667778887


Q ss_pred             HHcccc-ccHHHHHHcCchHHHHHHhc----CC-----CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcC
Q 014817          268 ALCLVK-QTRYKAVAAGAAETLVDRLA----DF-----DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI  337 (418)
Q Consensus       268 ~L~~~~-~n~~~i~~~G~v~~Lv~lL~----~~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~  337 (418)
                      -+-.+. +|+.....-+++..+++-+.    ++     ..+..++.-..|..+...+++|+.+... .++. +..++...
T Consensus       252 illq~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~-EGlq-Lm~Lmlr~  329 (536)
T KOG2734|consen  252 ILLQNSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKG-EGLQ-LMNLMLRE  329 (536)
T ss_pred             HHhccCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhcc-ccHH-HHHHHHHH
Confidence            776654 58888888999999999885    11     2356677888888888899999999985 4444 44555555


Q ss_pred             ChHHHHHHHHHHHHHhcCCH--HHHHHHHhcChHHHHHHHH
Q 014817          338 SDRATEYAAGALAALCSASE--RCQRDAVSAGVLTQLLLLV  376 (418)
Q Consensus       338 ~~~~~~~A~~~L~~l~~~~~--~~~~~~~~~g~i~~L~~ll  376 (418)
                      ....+..|+++|-.+..+.+  ..+...++.+++..+.-+.
T Consensus       330 Kk~sr~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F  370 (536)
T KOG2734|consen  330 KKVSRGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF  370 (536)
T ss_pred             HHHhhhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence            66678899999998777544  5566677766665554443

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=0.00058  Score=62.44  Aligned_cols=274  Identities=15%  Similarity=0.075  Sum_probs=179.5

Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHh-hcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLIS-SHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      ...+|+++.+.++++  +..|+..+..+...  ..+.... +.-.++.+.+++....       +  .+.|+.+|.|++.
T Consensus         5 l~elv~ll~~~sP~v--~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~-------~--~~~a~~alVnlsq   71 (353)
T KOG2973|consen    5 LVELVELLHSLSPPV--RKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLD-------P--AEPAATALVNLSQ   71 (353)
T ss_pred             HHHHHHHhccCChHH--HHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCcc-------c--ccHHHHHHHHHHh
Confidence            457888998887654  36677777777654  2222111 1336777888887653       2  5678889999997


Q ss_pred             ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh-c-----hhhhHHHHHHHhhcCCCC-
Q 014817          183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS-N-----LDEIFEGVIDILKNLSSY-  255 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~-~-----~~g~i~~Lv~lL~~~~~~-  255 (418)
                      .. ..++.+.+. .+..+++.+.+.....-...+.+|.||   +..++....+- .     ..|.+.......+.+. + 
T Consensus        72 ~~-~l~~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NL---s~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~-n~  145 (353)
T KOG2973|consen   72 KE-ELRKKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNL---SRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSY-NA  145 (353)
T ss_pred             hH-HHHHHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHh---ccCchHHHHHHHhcccccccchHHHHHHHhCccc-cc
Confidence            77 677877766 888899998887666677789999999   66665554442 1     1344444444455442 3 


Q ss_pred             hhhhHHHHHHHHHHccccccHHHHHHcCchHHH-HHHhcCCCcccH-HHHHHHHHHHhcCHhHHHHHHhc-cCC------
Q 014817          256 PRGLKVGIKALFALCLVKQTRYKAVAAGAAETL-VDRLADFDKCDA-ERALATVELLCRIPAGCAEFAEH-ALT------  326 (418)
Q Consensus       256 ~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~L-v~lL~~~~~~~~-~~a~~~L~~L~~~~~~~~~i~~~-~g~------  326 (418)
                      ..-....+-.+.||+.....|.-+.+...++.= +.-+.+.+..++ ...+++|.|.|-.......+... ...      
T Consensus       146 ~a~f~ylA~vf~nls~~~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLl  225 (353)
T KOG2973|consen  146 YAEFHYLAPVFANLSQFEAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILL  225 (353)
T ss_pred             ccchhHHHHHHHHHhhhhhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHh
Confidence            244567888899999999888888776533321 111223233332 45778888877655554444331 011      


Q ss_pred             ---------------hHHHHHHHhc-----CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC-CCHHHH
Q 014817          327 ---------------VPLLVKTILK-----ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD-CTDRAK  385 (418)
Q Consensus       327 ---------------i~~Lv~~l~~-----~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~  385 (418)
                                     +|.=++++-.     .++.++..-+.+|.-||. ...-|+.+++.|+-+. ++-++.+ .++.++
T Consensus       226 Plagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLca-T~~GRe~lR~kgvYpi-lRElhk~e~ded~~  303 (353)
T KOG2973|consen  226 PLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCA-TRAGREVLRSKGVYPI-LRELHKWEEDEDIR  303 (353)
T ss_pred             hcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHh-hhHhHHHHHhcCchHH-HHHHhcCCCcHHHH
Confidence                           2222344431     578888999999999998 6677787777777555 4666643 378889


Q ss_pred             HHHHHHHHHHHhh
Q 014817          386 RKAQLLLKLLRDS  398 (418)
Q Consensus       386 ~~A~~~L~~l~~~  398 (418)
                      +++-.+.++|-+-
T Consensus       304 ~ace~vvq~Lv~~  316 (353)
T KOG2973|consen  304 EACEQVVQMLVRL  316 (353)
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999988874

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.09  E-value=3.8e-06  Score=53.85  Aligned_cols=41  Identities=24%  Similarity=0.169  Sum_probs=37.8

Q ss_pred             ccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc
Q 014817          272 VKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR  312 (418)
Q Consensus       272 ~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  312 (418)
                      +++++..+++.|++|.|+++|.+++..+++.|+++|.||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            35688999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.06  E-value=1.9e-06  Score=78.77  Aligned_cols=67  Identities=15%  Similarity=0.356  Sum_probs=54.6

Q ss_pred             CCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCC----CCCcccHHHHHHHHHH
Q 014817           13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTD----FTLIPNHTLRRLIQDW   80 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~----~~l~~n~~L~~~i~~~   80 (418)
                      ++-....|++|+.+|.|+-++ .|=|||||+||-+++.. ..+||.|...+..    ..+..++.|++++-++
T Consensus        11 ~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen   11 ELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             hcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            444567999999999999988 59999999999999997 8889999876643    3456667777776554

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=98.05  E-value=5.7e-06  Score=74.01  Aligned_cols=66  Identities=18%  Similarity=0.373  Sum_probs=55.2

Q ss_pred             ccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCC-CCCCCCcccHHHHHHHHHHHHh
Q 014817           18 FRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSP-LTDFTLIPNHTLRRLIQDWCVA   83 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~-l~~~~l~~n~~L~~~i~~~~~~   83 (418)
                      +.||+|+.++++|+-+ +|||+||..||+..+-...+.||.|... +--+.+.|+...+.-|+.+...
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lkk  342 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALKK  342 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHHH
Confidence            7999999999999988 6999999999999887668889999753 3446778888777778877653

>PTZ00429 beta-adaptin; Provisional

Probab=98.05  E-value=0.0022  Score=67.54  Aligned_cols=221  Identities=12%  Similarity=0.076  Sum_probs=148.4

Q ss_pred             HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817          148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR  227 (418)
Q Consensus       148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~  227 (418)
                      +..+.+=+.++       |+.++..|+..|+.+....  .-..     .+..+.+.|.+.++.+|..|+-++..+   ..
T Consensus       107 INtl~KDl~d~-------Np~IRaLALRtLs~Ir~~~--i~e~-----l~~~lkk~L~D~~pYVRKtAalai~Kl---y~  169 (746)
T PTZ00429        107 VNTFLQDTTNS-------SPVVRALAVRTMMCIRVSS--VLEY-----TLEPLRRAVADPDPYVRKTAAMGLGKL---FH  169 (746)
T ss_pred             HHHHHHHcCCC-------CHHHHHHHHHHHHcCCcHH--HHHH-----HHHHHHHHhcCCCHHHHHHHHHHHHHH---Hh
Confidence            45555555444       7899999999999876533  2222     367788888899999999999999999   44


Q ss_pred             chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817          228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATV  307 (418)
Q Consensus       228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L  307 (418)
                      .+.  ..+ ...|.++.|.++|.+.  ++.+..+|+.+|..+......... ...+.+..|+..|.+.+.-.+...+.+|
T Consensus       170 ~~p--elv-~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~~~~~l~-l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL  243 (746)
T PTZ00429        170 DDM--QLF-YQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDYGSEKIE-SSNEWVNRLVYHLPECNEWGQLYILELL  243 (746)
T ss_pred             hCc--ccc-cccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHhCchhhH-HHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence            332  233 3367899999999988  899999999999999865543322 3355667777777665555555555555


Q ss_pred             HHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHHHHH
Q 014817          308 ELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDRAKR  386 (418)
Q Consensus       308 ~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~  386 (418)
                      ....  +......   ...+..+...|.+.|+.+.-.|++++.++... +++....+ -..+..+|+.++ ++ ++++|-
T Consensus       244 ~~y~--P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~-~~rl~~pLv~L~-ss-~~eiqy  315 (746)
T PTZ00429        244 AAQR--PSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERC-TVRVNTALLTLS-RR-DAETQY  315 (746)
T ss_pred             HhcC--CCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHH-HHHHHHHHHHhh-CC-CccHHH
Confidence            4322  1111111   13466778888888999999999999998863 23332221 112335566654 44 778888


Q ss_pred             HHHHHHHHHHhhC
Q 014817          387 KAQLLLKLLRDSW  399 (418)
Q Consensus       387 ~A~~~L~~l~~~~  399 (418)
                      .+..-|..+...+
T Consensus       316 vaLr~I~~i~~~~  328 (746)
T PTZ00429        316 IVCKNIHALLVIF  328 (746)
T ss_pred             HHHHHHHHHHHHC
Confidence            8887777776654

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=1.6e-06  Score=87.77  Aligned_cols=53  Identities=13%  Similarity=0.275  Sum_probs=48.3

Q ss_pred             cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 014817           17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIP   69 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~   69 (418)
                      -++||+|..=.+|-|++.|||.||..||+.........||.|..+|.+.++.+
T Consensus       643 ~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978|consen  643 LLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             ceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence            46999999999999999999999999999998866789999999998877755

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=6.4e-06  Score=85.94  Aligned_cols=72  Identities=33%  Similarity=0.526  Sum_probs=67.2

Q ss_pred             CCCCCcccCcCccccccCCeecC-CCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817           12 VQIPYHFRCPISLELMCDPVTVC-TGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN   84 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~   84 (418)
                      .++|++|..|+...+|+|||++| +|++.||+.|+.++-. ..+.|.|+.++..+.+.||..|+.-|+.|..+.
T Consensus       865 ~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~ek  937 (943)
T KOG2042|consen  865 GDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIKEK  937 (943)
T ss_pred             ccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHHHh
Confidence            46999999999999999999998 9999999999999875 678999999999999999999999999998764

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=3.4e-06  Score=81.54  Aligned_cols=54  Identities=31%  Similarity=0.563  Sum_probs=46.5

Q ss_pred             cccCcCccccccCCeecCCCCcccHHHHHHHHHcC----CCCCCCCCCCCCCCCCccc
Q 014817           17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATG----NTTCPVTRSPLTDFTLIPN   70 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~----~~~cp~~~~~l~~~~l~~n   70 (418)
                      +..||||++...-|+.+.|||.||-.||-.+|..+    ...||.|+..+...++.|.
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv  243 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV  243 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence            77999999999999999999999999999998743    4569999988877665554

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.02  E-value=4.7e-06  Score=60.69  Aligned_cols=39  Identities=36%  Similarity=0.688  Sum_probs=32.1

Q ss_pred             CcCccccccCC-------------eecCCCCcccHHHHHHHHHcCCCCCCCCC
Q 014817           20 CPISLELMCDP-------------VTVCTGQTYDRPSIESWVATGNTTCPVTR   59 (418)
Q Consensus        20 Cpi~~~~~~dP-------------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~   59 (418)
                      |+||++.|.+|             +..+|||.|-..||.+|++. ..+||.|+
T Consensus        22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            99999999544             24489999999999999986 55999995

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.02  E-value=1.1e-05  Score=51.65  Aligned_cols=41  Identities=27%  Similarity=0.246  Sum_probs=37.8

Q ss_pred             CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          313 IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       313 ~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      ++++++.+++. |+++.|+++|.+.+..+++.|+++|.|||+
T Consensus         1 ~~~~~~~i~~~-g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEA-GGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHT-THHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHc-ccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            46889999995 999999999999999999999999999984

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.94  E-value=7.3e-06  Score=78.78  Aligned_cols=73  Identities=22%  Similarity=0.405  Sum_probs=57.3

Q ss_pred             CCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC-----CcccHHHHHHHHHHHHh
Q 014817           10 LSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT-----LIPNHTLRRLIQDWCVA   83 (418)
Q Consensus        10 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~-----l~~n~~L~~~i~~~~~~   83 (418)
                      .+..++.+|.|-||...+..||+++|||+||+.||.+.++. ...||.|+..+....     ..+|+.+..+|..|+..
T Consensus        77 ~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   77 GPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             cCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            34567889999999999999999999999999999997774 677999998875321     12355556777777554

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.93  E-value=9.3e-06  Score=79.13  Aligned_cols=70  Identities=24%  Similarity=0.490  Sum_probs=56.7

Q ss_pred             CCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc-cHHHHHHHHHHHHh
Q 014817           13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIP-NHTLRRLIQDWCVA   83 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~-n~~L~~~i~~~~~~   83 (418)
                      .+.+++.||+|..+++||+.. .|||.||+.|+.+|... +..||.|+..+......+ ...+++.+..|...
T Consensus        17 ~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l~i~   88 (391)
T KOG0297|consen   17 PLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKLPIR   88 (391)
T ss_pred             CCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhcccc
Confidence            467789999999999999995 99999999999999987 888999988776444433 44667777766443

>TIGR02270 conserved hypothetical protein

Probab=97.91  E-value=0.0015  Score=64.07  Aligned_cols=188  Identities=15%  Similarity=-0.044  Sum_probs=105.3

Q ss_pred             HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817          148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR  227 (418)
Q Consensus       148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~  227 (418)
                      +..|+..|.+.       ++.++..++.+|..+-.           .+..+.|+.+|.+.++.++..++.++...   . 
T Consensus        88 ~~~L~~~L~d~-------~~~vr~aaa~ALg~i~~-----------~~a~~~L~~~L~~~~p~vR~aal~al~~r---~-  145 (410)
T TIGR02270        88 LRSVLAVLQAG-------PEGLCAGIQAALGWLGG-----------RQAEPWLEPLLAASEPPGRAIGLAALGAH---R-  145 (410)
T ss_pred             HHHHHHHhcCC-------CHHHHHHHHHHHhcCCc-----------hHHHHHHHHHhcCCChHHHHHHHHHHHhh---c-
Confidence            67777777665       35677777777765432           23456666777666666665555333332   0 


Q ss_pred             chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817          228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATV  307 (418)
Q Consensus       228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L  307 (418)
                                 ....+.|..+|++.  ++.++..|+++|..|-          ...+++.|...+.+.++.++..|+..|
T Consensus       146 -----------~~~~~~L~~~L~d~--d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al  202 (410)
T TIGR02270       146 -----------HDPGPALEAALTHE--DALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAG  202 (410)
T ss_pred             -----------cChHHHHHHHhcCC--CHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHH
Confidence                       11335566666655  6777777777776653          223444455566666666666666666


Q ss_pred             HHHhcCHhHHHHHHh---c------------------cCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 014817          308 ELLCRIPAGCAEFAE---H------------------ALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSA  366 (418)
Q Consensus       308 ~~L~~~~~~~~~i~~---~------------------~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~  366 (418)
                      ..+.. ++....+..   .                  ..+++.|..++..  +.++..++.+|..+-.           .
T Consensus       203 ~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~~~~~a~~~L~~ll~d--~~vr~~a~~AlG~lg~-----------p  268 (410)
T TIGR02270       203 LLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVAGGPDAQAWLRELLQA--AATRREALRAVGLVGD-----------V  268 (410)
T ss_pred             HHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhCCchhHHHHHHHHhcC--hhhHHHHHHHHHHcCC-----------c
Confidence            54432 221111111   0                  0123333333332  2255555555544332           3


Q ss_pred             ChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          367 GVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       367 g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      ..++.|+..+..   +..++.|...++.+..
T Consensus       269 ~av~~L~~~l~d---~~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       269 EAAPWCLEAMRE---PPWARLAGEAFSLITG  296 (410)
T ss_pred             chHHHHHHHhcC---cHHHHHHHHHHHHhhC
Confidence            367777777743   3499999999999988

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.87  E-value=0.00054  Score=68.53  Aligned_cols=176  Identities=15%  Similarity=0.152  Sum_probs=123.8

Q ss_pred             ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhh-cc-c--CCchHHHHHHhcCCCHHHHHHHHHHHHH
Q 014817          146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEI-AS-D--ADKITSLSSLLFHSSIEVRVNSAALIEI  221 (418)
Q Consensus       146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~-i~-~--~g~i~~Lv~~L~~~~~~~~~~a~~~L~~  221 (418)
                      .++|.|..+|.+++       ...++.|..+|..++.+..+.-.. +. +  .-.+|.++++.++.++.+|..|...+..
T Consensus       128 elLp~L~~~L~s~d-------~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq  200 (885)
T KOG2023|consen  128 ELLPQLCELLDSPD-------YNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQ  200 (885)
T ss_pred             hHHHHHHHHhcCCc-------ccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhh
Confidence            36889999998874       566899999999988665332111 11 1  2358999999999999999999998888


Q ss_pred             HHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHH
Q 014817          222 VLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAE  301 (418)
Q Consensus       222 L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~  301 (418)
                      ++. ......-..|   ...++.|..+..+.  +++++++.+.+|..|-.....+-.--=.|+|+.++..-++.+.++.-
T Consensus       201 ~i~-~~~qal~~~i---D~Fle~lFalanD~--~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VAL  274 (885)
T KOG2023|consen  201 FII-IQTQALYVHI---DKFLEILFALANDE--DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVAL  274 (885)
T ss_pred             eee-cCcHHHHHHH---HHHHHHHHHHccCC--CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHH
Confidence            741 1222222222   45888999988777  89999999999999975543332221246777777777788888999


Q ss_pred             HHHHHHHHHhcCHhHHHHHHhc-cCChHHHHHHH
Q 014817          302 RALATVELLCRIPAGCAEFAEH-ALTVPLLVKTI  334 (418)
Q Consensus       302 ~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~~l  334 (418)
                      +|+.....+|..+..+..+..+ ...||.|++-|
T Consensus       275 EACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M  308 (885)
T KOG2023|consen  275 EACEFWLALAEQPICKEVLQPYLDKLIPVLLSGM  308 (885)
T ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence            9999999999887666555443 13455555443

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.0064  Score=64.04  Aligned_cols=137  Identities=18%  Similarity=0.138  Sum_probs=109.3

Q ss_pred             hhHHHHHHHHHHccccccHHHH-----HHcCchHHHHHHhc-CCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHH
Q 014817          258 GLKVGIKALFALCLVKQTRYKA-----VAAGAAETLVDRLA-DFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLV  331 (418)
Q Consensus       258 ~~~~a~~aL~~L~~~~~n~~~i-----~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv  331 (418)
                      -...++.||.||-.....-..+     .=-|-++.+..+|. .+++.++..|+.++..+..+.+....++.. |.+-.|+
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~~Cv~~~a~~-~vL~~LL 1819 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLIGNFPLLITYLRCRKHPKLQILALQVILLATANKECVTDLATC-NVLTTLL 1819 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhhcccHHHHHHHHHcCCchHHHHHHHHHHHHhcccHHHHHHHhh-hHHHHHH
Confidence            3456777888876544322222     12477888888886 457889999999999999999999999996 8777777


Q ss_pred             HHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          332 KTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       332 ~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      .+| ++-+..++.++.+|+.|+. +++...+..+.|++..++.++-...++..|.+|+.++..|..
T Consensus      1820 ~lL-HS~PS~R~~vL~vLYAL~S-~~~i~keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~A 1883 (2235)
T KOG1789|consen 1820 TLL-HSQPSMRARVLDVLYALSS-NGQIGKEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQA 1883 (2235)
T ss_pred             HHH-hcChHHHHHHHHHHHHHhc-CcHHHHHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhh
Confidence            755 4667789999999999998 888899999999999999998765578899999999988765

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.80  E-value=3.1e-05  Score=73.09  Aligned_cols=51  Identities=29%  Similarity=0.516  Sum_probs=45.9

Q ss_pred             ccCcCccccccCCeecC-CCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 014817           18 FRCPISLELMCDPVTVC-TGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIP   69 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~   69 (418)
                      +.|.|++++-++||+.+ +||.|+|+-|+++..+ +.+||+++++++..++++
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~   52 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE   52 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence            46999999999999996 9999999999999987 788999999998776655

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.0015  Score=59.74  Aligned_cols=190  Identities=19%  Similarity=0.139  Sum_probs=131.1

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH
Q 014817          197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR  276 (418)
Q Consensus       197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~  276 (418)
                      +..++.+|.+.++.++..|+..+.+|+   .. ..+.....+...++.|.+++...  .+  .+.|+.+|.|++....-+
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt---~~-~~~~~~~~~~~~lk~l~qL~~~~--~~--~~~a~~alVnlsq~~~l~   76 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLT---GR-GLQSLSKYSEALLKDLTQLLKDL--DP--AEPAATALVNLSQKEELR   76 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcc---cc-chhhhccchhhhHHHHHHHccCc--cc--ccHHHHHHHHHHhhHHHH
Confidence            456889999999999999999999994   33 44444433456888899999877  44  788999999999999988


Q ss_pred             HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHh-cc----CChHHHHHHHhc--CChHH-HHHHHHH
Q 014817          277 YKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAE-HA----LTVPLLVKTILK--ISDRA-TEYAAGA  348 (418)
Q Consensus       277 ~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~----g~i~~Lv~~l~~--~~~~~-~~~A~~~  348 (418)
                      ..+++. .+..++..+.++...+....+.+|.||++.+.....+.. ..    .++..++...-.  .+... -.+-+.+
T Consensus        77 ~~ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~v  155 (353)
T KOG2973|consen   77 KKLLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPV  155 (353)
T ss_pred             HHHHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHH
Confidence            888877 778888888877677888999999999987766554432 11    234444444433  22222 3566667


Q ss_pred             HHHHhcCCHHHHHHHHhcChHH--HHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          349 LAALCSASERCQRDAVSAGVLT--QLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       349 L~~l~~~~~~~~~~~~~~g~i~--~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      +.||+. .+..|..+.....++  +|+. +.+..+...|...+++|+|++-
T Consensus       156 f~nls~-~~~gR~l~~~~k~~p~~kll~-ft~~~s~vRr~GvagtlkN~cF  204 (353)
T KOG2973|consen  156 FANLSQ-FEAGRKLLLEPKRFPDQKLLP-FTSEDSQVRRGGVAGTLKNCCF  204 (353)
T ss_pred             HHHHhh-hhhhhhHhcchhhhhHhhhhc-ccccchhhhccchHHHHHhhhc
Confidence            788887 555666666555332  2222 2234345555668889998654

>TIGR02270 conserved hypothetical protein

Probab=97.76  E-value=0.0033  Score=61.70  Aligned_cols=151  Identities=17%  Similarity=0.055  Sum_probs=114.8

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGM  226 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s  226 (418)
                      +++.|+..|..+.      +.++...++.++.  ..++         ..++..|+..|.+.++.++..++.+|..+    
T Consensus        55 a~~~L~~aL~~d~------~~ev~~~aa~al~--~~~~---------~~~~~~L~~~L~d~~~~vr~aaa~ALg~i----  113 (410)
T TIGR02270        55 ATELLVSALAEAD------EPGRVACAALALL--AQED---------ALDLRSVLAVLQAGPEGLCAGIQAALGWL----  113 (410)
T ss_pred             HHHHHHHHHhhCC------ChhHHHHHHHHHh--ccCC---------hHHHHHHHHHhcCCCHHHHHHHHHHHhcC----
Confidence            6788888886543      4566665555443  2222         12489999999999999999998888777    


Q ss_pred             cchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHH
Q 014817          227 RSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALAT  306 (418)
Q Consensus       227 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~  306 (418)
                                ...+..+.|+.+|++.  ++.++..++.++..           ......+.++.+|.+.+..+...|+.+
T Consensus       114 ----------~~~~a~~~L~~~L~~~--~p~vR~aal~al~~-----------r~~~~~~~L~~~L~d~d~~Vra~A~ra  170 (410)
T TIGR02270       114 ----------GGRQAEPWLEPLLAAS--EPPGRAIGLAALGA-----------HRHDPGPALEAALTHEDALVRAAALRA  170 (410)
T ss_pred             ----------CchHHHHHHHHHhcCC--ChHHHHHHHHHHHh-----------hccChHHHHHHHhcCCCHHHHHHHHHH
Confidence                      2245778899999888  89999888877766           123356789999999899999999999


Q ss_pred             HHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHH
Q 014817          307 VELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAAL  352 (418)
Q Consensus       307 L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l  352 (418)
                      |..|-.           ...++.|...+.+.++.++..|+.++..+
T Consensus       171 LG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l  205 (410)
T TIGR02270       171 LGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA  205 (410)
T ss_pred             HHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence            987653           35677788888889999999999988665

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.70  E-value=0.00021  Score=54.01  Aligned_cols=88  Identities=19%  Similarity=0.153  Sum_probs=69.5

Q ss_pred             HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817          148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR  227 (418)
Q Consensus       148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~  227 (418)
                      ||.|++.|..+.      ++.++..|+.+|+.+.  +         ..+++.|++++++.++.+|..|+.+|..+   . 
T Consensus         1 i~~L~~~l~~~~------~~~vr~~a~~~L~~~~--~---------~~~~~~L~~~l~d~~~~vr~~a~~aL~~i---~-   59 (88)
T PF13646_consen    1 IPALLQLLQNDP------DPQVRAEAARALGELG--D---------PEAIPALIELLKDEDPMVRRAAARALGRI---G-   59 (88)
T ss_dssp             HHHHHHHHHTSS------SHHHHHHHHHHHHCCT--H---------HHHHHHHHHHHTSSSHHHHHHHHHHHHCC---H-
T ss_pred             CHHHHHHHhcCC------CHHHHHHHHHHHHHcC--C---------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh---C-
Confidence            578999994443      6899999999999652  2         14589999999999999999999999988   2 


Q ss_pred             chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHH
Q 014817          228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALF  267 (418)
Q Consensus       228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~  267 (418)
                                ...+++.|.+++.++. +..++..|..+|.
T Consensus        60 ----------~~~~~~~L~~~l~~~~-~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 ----------DPEAIPALIKLLQDDD-DEVVREAAAEALG   88 (88)
T ss_dssp             ----------HHHTHHHHHHHHTC-S-SHHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHcCCC-cHHHHHHHHhhcC
Confidence                      2447899999999874 5667888888874

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.67  E-value=0.00043  Score=62.70  Aligned_cols=189  Identities=15%  Similarity=0.166  Sum_probs=112.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHhcccchhhhhHhhch-hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcC
Q 014817          205 FHSSIEVRVNSAALIEIVLAGMRSQELRAQISNL-DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAG  283 (418)
Q Consensus       205 ~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G  283 (418)
                      .+.+.+.|..+..-|..++.+....+....+... ..++..+...+.+.  ...+...|+.++..|+........-.-..
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~--Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL--RSKVSKTACQLLSDLARQLGSHFEPYADI   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH-----HHHHHHHHHHHHHHHHGGGGHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh--HHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence            5678999999999999995211112333333211 12445666666665  66789999999999997755443333445


Q ss_pred             chHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHH
Q 014817          284 AAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDA  363 (418)
Q Consensus       284 ~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~  363 (418)
                      .+|.|+..+.++...+.+.|..+|..++.+-..-..+.     ++.+...+.+.++.++..++..|..+...-+.....+
T Consensus        95 ~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l  169 (228)
T PF12348_consen   95 LLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVL  169 (228)
T ss_dssp             HHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG
T ss_pred             HHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhh
Confidence            88999999988888888999999998886433112221     2345555677899999999999988876333111111


Q ss_pred             Hh----cChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCC
Q 014817          364 VS----AGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQ  401 (418)
Q Consensus       364 ~~----~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~~  401 (418)
                      ..    ..+++.+...+... ++.+|+.|..++..+..++..
T Consensus       170 ~~~~~~~~l~~~l~~~l~D~-~~~VR~~Ar~~~~~l~~~~~~  210 (228)
T PF12348_consen  170 QKSAFLKQLVKALVKLLSDA-DPEVREAARECLWALYSHFPE  210 (228)
T ss_dssp             --HHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHHHHH-H
T ss_pred             cccchHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHHHHHCCH
Confidence            11    33566666666555 999999999999999887654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=97.67  E-value=6.8e-05  Score=74.04  Aligned_cols=72  Identities=31%  Similarity=0.463  Sum_probs=65.8

Q ss_pred             CCCCCcccCcCccccccCCeecC-CCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817           12 VQIPYHFRCPISLELMCDPVTVC-TGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN   84 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~   84 (418)
                      -++|++|..|+.-.+|+|||+++ +|-+.+|+.|..++-. ..+.|.-+.|+..+++.||..|++-|-.|....
T Consensus       849 GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~k~k  921 (929)
T COG5113         849 GDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFYKCK  921 (929)
T ss_pred             cCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHHhcc
Confidence            48999999999999999999997 8999999999998775 678999999999999999999999999986653

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.63  E-value=0.00033  Score=52.93  Aligned_cols=86  Identities=24%  Similarity=0.234  Sum_probs=68.1

Q ss_pred             hHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc
Q 014817          197 ITSLSSLL-FHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT  275 (418)
Q Consensus       197 i~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n  275 (418)
                      |+.|++.| ++.++.+|..++.+|..+   .           ...+++.|+++++++  ++.++..|+++|..+-     
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~---~-----------~~~~~~~L~~~l~d~--~~~vr~~a~~aL~~i~-----   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL---G-----------DPEAIPALIELLKDE--DPMVRRAAARALGRIG-----   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC---T-----------HHHHHHHHHHHHTSS--SHHHHHHHHHHHHCCH-----
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc---C-----------CHhHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-----
Confidence            67899999 888999999988888866   1           124789999999887  8999999999999882     


Q ss_pred             HHHHHHcCchHHHHHHhcCCCc-ccHHHHHHHHH
Q 014817          276 RYKAVAAGAAETLVDRLADFDK-CDAERALATVE  308 (418)
Q Consensus       276 ~~~i~~~G~v~~Lv~lL~~~~~-~~~~~a~~~L~  308 (418)
                           ...+++.|.+++.+++. .++..|+.+|.
T Consensus        60 -----~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -----DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             -----HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             -----CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                 34489999999987544 45677777663

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.61  E-value=0.00043  Score=67.60  Aligned_cols=197  Identities=11%  Similarity=-0.013  Sum_probs=146.4

Q ss_pred             HHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC
Q 014817          175 ALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS  254 (418)
Q Consensus       175 ~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~  254 (418)
                      ..|..++.+..-.|..+.+..+.++|+++|..+...+.--++..+.|+.  -.....+..+-. .|+|..|+.++.+.  
T Consensus       411 l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~v--v~fsnL~~~fL~-~~iIdvl~~~v~sK--  485 (743)
T COG5369         411 LFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKV--VPFSNLGAGFLE-KSIIDVLVNLVMSK--  485 (743)
T ss_pred             HHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhhee--eeccchHHHHHH-hhHHHHHHHHhhcc--
Confidence            3455666666667889999999999999998876666667788888885  456666666644 78999999999988  


Q ss_pred             ChhhhHHHHHHHHHHccccc--cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHH-------HhccC
Q 014817          255 YPRGLKVGIKALFALCLVKQ--TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEF-------AEHAL  325 (418)
Q Consensus       255 ~~~~~~~a~~aL~~L~~~~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i-------~~~~g  325 (418)
                      +...+.+..|.|+++--+.+  .+-+++..-++..++++..+++-.+++.++.+|+|+..+..-.++.       ....-
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~y  565 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRY  565 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHHH
Confidence            78899999999999997765  4566678889999999999999999999999999998633221111       11101


Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHh-cChHHHHHHHH
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVS-AGVLTQLLLLV  376 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll  376 (418)
                      ....|++.+...++...+..+-+|.+++..+.+.++.+.+ ...+..+-++|
T Consensus       566 lfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil  617 (743)
T COG5369         566 LFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEIL  617 (743)
T ss_pred             HHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHH
Confidence            2234566666678887888888888888867777776655 34555544444

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.57  E-value=7.8e-05  Score=54.84  Aligned_cols=46  Identities=24%  Similarity=0.430  Sum_probs=36.7

Q ss_pred             ccCcCccccccC-Ceec-CCCCcccHHHHHHHHHc--CCCCCCCCCCCCC
Q 014817           18 FRCPISLELMCD-PVTV-CTGQTYDRPSIESWVAT--GNTTCPVTRSPLT   63 (418)
Q Consensus        18 ~~Cpi~~~~~~d-Pv~~-~~g~~~~r~~i~~~~~~--~~~~cp~~~~~l~   63 (418)
                      -.||.|+..-.| |++. .|||.|-..||.+|++.  ....||.|+++..
T Consensus        33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence            357777776666 7766 79999999999999985  3578999998764

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.55  E-value=0.008  Score=60.46  Aligned_cols=272  Identities=15%  Similarity=0.107  Sum_probs=170.3

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhh----cChHHHHHHHhhcccccccCCChhHHHHHHHH
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISS----HNVRAILSQVFFTNINVKTASSPELAHESLAL  176 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~----~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~  176 (418)
                      ++.++.|.+.|.+.+.+.  +..|.++|.+++.++..--+.=+-    .-.+|.++++.+.+       ++.++..|+..
T Consensus       127 pelLp~L~~~L~s~d~n~--~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~-------spkiRs~A~~c  197 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNT--CEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHP-------SPKIRSHAVGC  197 (885)
T ss_pred             hhHHHHHHHHhcCCcccc--cchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCC-------ChhHHHHHHhh
Confidence            356788999998876443  378999999999765542221000    12678888888877       68999999998


Q ss_pred             HhcCCCChhHHHhhcc-cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhch-hhhHHHHHHHhhcCCC
Q 014817          177 LVMFPLTETECMEIAS-DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNL-DEIFEGVIDILKNLSS  254 (418)
Q Consensus       177 L~~l~~~~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~  254 (418)
                      +..+....  .+..+. -..+++.|..+-...++++|.+.+.+|..|.  ....   ..+.-+ .++++-.+...++.  
T Consensus       198 vNq~i~~~--~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Ll--evr~---dkl~phl~~IveyML~~tqd~--  268 (885)
T KOG2023|consen  198 VNQFIIIQ--TQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLL--EVRP---DKLVPHLDNIVEYMLQRTQDV--  268 (885)
T ss_pred             hhheeecC--cHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH--HhcH---HhcccchHHHHHHHHHHccCc--
Confidence            77554432  122222 2346677777777789999999999999994  2221   133221 46788888777777  


Q ss_pred             ChhhhHHHHHHHHHHccccccHHHHHH--cCchHHHHHHhcCCCc-----------------------------------
Q 014817          255 YPRGLKVGIKALFALCLVKQTRYKAVA--AGAAETLVDRLADFDK-----------------------------------  297 (418)
Q Consensus       255 ~~~~~~~a~~aL~~L~~~~~n~~~i~~--~G~v~~Lv~lL~~~~~-----------------------------------  297 (418)
                      +..+.-.|+.....++...-.+..+..  ...||.|++-+.-.+.                                   
T Consensus       269 dE~VALEACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~  348 (885)
T KOG2023|consen  269 DENVALEACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGE  348 (885)
T ss_pred             chhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcc
Confidence            788999999999999988744444433  3566666654421100                                   


Q ss_pred             ---------------------ccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 014817          298 ---------------------CDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS  356 (418)
Q Consensus       298 ---------------------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~  356 (418)
                                           +++.-++++|.-|+.  --+..+..  -.+|.|-+.|.+..-.++|.++-+|.+|+.|-
T Consensus       349 ~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLan--vf~~elL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGc  424 (885)
T KOG2023|consen  349 DADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLAN--VFGDELLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAEGC  424 (885)
T ss_pred             ccccccccccccccccccccccHhhccHHHHHHHHH--hhHHHHHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHHHH
Confidence                                 111222223332221  11122222  12344444455577788999999999998732


Q ss_pred             HHHHHHHHhc--ChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          357 ERCQRDAVSA--GVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       357 ~~~~~~~~~~--g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                         .+-++..  ..++.|+.+|..- .+-+|.-.+|+|...+.+
T Consensus       425 ---M~g~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~w  464 (885)
T KOG2023|consen  425 ---MQGFVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKW  464 (885)
T ss_pred             ---hhhcccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhh
Confidence               2212221  3678888888555 788888888888877664

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.50  E-value=0.0027  Score=53.15  Aligned_cols=126  Identities=13%  Similarity=0.150  Sum_probs=101.1

Q ss_pred             hhhHHHHHHHhhcCCC----ChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC--CcccHHHHHHHHHHHhc
Q 014817          239 DEIFEGVIDILKNLSS----YPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF--DKCDAERALATVELLCR  312 (418)
Q Consensus       239 ~g~i~~Lv~lL~~~~~----~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~  312 (418)
                      .||+..|+++++++..    ..+....++.++..|-.++-.-...++..-|..++..+...  +..+...|+.+|.+++.
T Consensus        10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl   89 (160)
T PF11841_consen   10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL   89 (160)
T ss_pred             ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence            5789999999999841    14677889999999888776566777777888888888743  57899999999999998


Q ss_pred             CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHH
Q 014817          313 IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAV  364 (418)
Q Consensus       313 ~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~  364 (418)
                      ++......+..+=.++.|+.+|...+..+|.+|+..+-+|.. .++..|+++.
T Consensus        90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~  142 (160)
T PF11841_consen   90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIA  142 (160)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            877766666655789999999999999999999999888877 4444555443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.50  E-value=0.01  Score=57.05  Aligned_cols=155  Identities=19%  Similarity=0.153  Sum_probs=105.9

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGM  226 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s  226 (418)
                      .++.+.+.+.+.       +..++..|...+..+..           ..+++.|..+|.+.+..+|..|+.+|..+    
T Consensus        44 ~~~~~~~~l~~~-------~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~----  101 (335)
T COG1413          44 AADELLKLLEDE-------DLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL----  101 (335)
T ss_pred             hHHHHHHHHcCC-------CHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc----
Confidence            577778888776       36778877777554432           24688899999999999999888877777    


Q ss_pred             cchhhhhHhhchhhhHHHHHHHhhc-CCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCccc------
Q 014817          227 RSQELRAQISNLDEIFEGVIDILKN-LSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCD------  299 (418)
Q Consensus       227 ~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~------  299 (418)
                                .....++.|+..+.+ .  +..++..+.++|..+-..          .++..++..+.+.....      
T Consensus       102 ----------~~~~a~~~li~~l~~d~--~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~~~~~~a~~~~~  159 (335)
T COG1413         102 ----------GDPEAVPPLVELLENDE--NEGVRAAAARALGKLGDE----------RALDPLLEALQDEDSGSAAAALD  159 (335)
T ss_pred             ----------CChhHHHHHHHHHHcCC--cHhHHHHHHHHHHhcCch----------hhhHHHHHHhccchhhhhhhhcc
Confidence                      123467888888885 5  788999999998877432          23677777777644221      


Q ss_pred             ------HHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 014817          300 ------AERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS  356 (418)
Q Consensus       300 ------~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~  356 (418)
                            +..+...|..          +.. ...++.+...+...+..++..|+.+|..+...+
T Consensus       160 ~~~~~~r~~a~~~l~~----------~~~-~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~  211 (335)
T COG1413         160 AALLDVRAAAAEALGE----------LGD-PEAIPLLIELLEDEDADVRRAAASALGQLGSEN  211 (335)
T ss_pred             chHHHHHHHHHHHHHH----------cCC-hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence                  1122222221          111 356778888888888888999988888877743

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.49  E-value=4.3e-05  Score=68.81  Aligned_cols=45  Identities=18%  Similarity=0.266  Sum_probs=39.6

Q ss_pred             ccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      |-|-||++.|.+||+..|||+||..|-.+-+.. ...|++|++...
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t~  286 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQTH  286 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhcccccc-CCcceecccccc
Confidence            789999999999999999999999998777665 577999987764

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.48  E-value=0.033  Score=55.63  Aligned_cols=235  Identities=14%  Similarity=0.098  Sum_probs=148.3

Q ss_pred             chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc-cCC
Q 014817          117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIAS-DAD  195 (418)
Q Consensus       117 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g  195 (418)
                      +.....+|++.|.+..-.++..|..+++.|+.+.++..|+...+..  .+.++.-....+|-.+.....+.+..++ +.+
T Consensus        45 ~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l~~~Lk~~~~~~--~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~  122 (446)
T PF10165_consen   45 DPDVSREALKCLCNALFLSPSARQIFVDLGLAEKLCERLKNYSDSS--QPSDVEFLDSRLLFLLTALRPDDRKKLIEEHH  122 (446)
T ss_pred             ChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHHHHHHHcccccC--CChhHHHHHHHHHHHHhcCChhHHHHHHHHhh
Confidence            3345689999999999999999999999999999999998763211  1356677777777666655546676666 457


Q ss_pred             chHHHHHHhcC-----------------CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC---C--
Q 014817          196 KITSLSSLLFH-----------------SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL---S--  253 (418)
Q Consensus       196 ~i~~Lv~~L~~-----------------~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~---~--  253 (418)
                      ++..|+..|..                 .+.+....+.++++|+.  ........  ....+.++.|+.++..-   .  
T Consensus       123 ~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit--~~~~~~~~--~~~~~~~~~l~~il~~~l~~~~~  198 (446)
T PF10165_consen  123 GVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNIT--LHYPKSVP--EEFSPSIPHLVSILRRLLPPPPS  198 (446)
T ss_pred             hHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhh--hccCcccc--hhhhHHHHHHHHHHHHHhccCCC
Confidence            77777776532                 12444567888889984  22222111  11234566666654421   1  


Q ss_pred             --CChhhhHHHHHHHHHHccccc-c-------HH----HHHHcCchHHHHHHhcC----C-C-c--ccHHHHHHHHHHHh
Q 014817          254 --SYPRGLKVGIKALFALCLVKQ-T-------RY----KAVAAGAAETLVDRLAD----F-D-K--CDAERALATVELLC  311 (418)
Q Consensus       254 --~~~~~~~~a~~aL~~L~~~~~-n-------~~----~i~~~G~v~~Lv~lL~~----~-~-~--~~~~~a~~~L~~L~  311 (418)
                        .......++..+|.|+-.... .       ..    .......+..|+++|..    . + .  +...-.+.+|..++
T Consensus       199 ~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~  278 (446)
T PF10165_consen  199 SPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLA  278 (446)
T ss_pred             CCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHH
Confidence              123567778888888832110 0       00    01123457777777752    1 1 1  34456777788888


Q ss_pred             cC-HhHHHHHHh---------------ccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 014817          312 RI-PAGCAEFAE---------------HALTVPLLVKTILKISDRATEYAAGALAALCSASE  357 (418)
Q Consensus       312 ~~-~~~~~~i~~---------------~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~  357 (418)
                      .. ...|..+..               ....--.|+++|.+....++..+...|+.||.++.
T Consensus       279 ~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~vaellf~Lc~~d~  340 (446)
T PF10165_consen  279 RAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDAVAELLFVLCKEDA  340 (446)
T ss_pred             HhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHHHHHHHHHHHhhhH
Confidence            65 445555443               11234478888887778999999999999998554

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.45  E-value=0.00047  Score=62.43  Aligned_cols=181  Identities=15%  Similarity=0.073  Sum_probs=110.3

Q ss_pred             hcCCCchhhhHHHHHHHHHhhhcC--hhhhhHHhh--cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHH
Q 014817          112 SSESNTYGSRLSALRRLRGLARDS--DKNRSLISS--HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETEC  187 (418)
Q Consensus       112 ~~~~~~~~~~~~Al~~L~~l~~~~--~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~  187 (418)
                      +..+.+...+.+|+..|+.+..++  ......+.+  ...+..+...+.+.       +..+...|+.++..++..-   
T Consensus        15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-------Rs~v~~~A~~~l~~l~~~l---   84 (228)
T PF12348_consen   15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-------RSKVSKTACQLLSDLARQL---   84 (228)
T ss_dssp             HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----------HHHHHHHHHHHHHHHH---
T ss_pred             cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-------HHHHHHHHHHHHHHHHHHH---
Confidence            445557888999999999999876  333333332  13445666666554       4568888888888776433   


Q ss_pred             Hhhcc--cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhh-HHHHHHHhhcCCCChhhhHHHHH
Q 014817          188 MEIAS--DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEI-FEGVIDILKNLSSYPRGLKVGIK  264 (418)
Q Consensus       188 ~~~i~--~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~~a~~  264 (418)
                      +..+.  -...++.|++.+.+++.-++..|..+|..+.   ..-.    . . ..+ ++.+...+.+.  ++.++..++.
T Consensus        85 ~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~---~~~~----~-~-~~~~~~~l~~~~~~K--n~~vR~~~~~  153 (228)
T PF12348_consen   85 GSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAII---ESCS----Y-S-PKILLEILSQGLKSK--NPQVREECAE  153 (228)
T ss_dssp             GGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHH---TTS-----H----HHHHHHHHHHTT-S---HHHHHHHHH
T ss_pred             hHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHH---HHCC----c-H-HHHHHHHHHHHHhCC--CHHHHHHHHH
Confidence            22222  3457899999999999999999999999994   2211    1 1 223 56666677777  8999999999


Q ss_pred             HHHHHccccc-cHHHHHH----cCchHHHHHHhcCCCcccHHHHHHHHHHHhcC
Q 014817          265 ALFALCLVKQ-TRYKAVA----AGAAETLVDRLADFDKCDAERALATVELLCRI  313 (418)
Q Consensus       265 aL~~L~~~~~-n~~~i~~----~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  313 (418)
                      .|..+..... +...+-.    ...++.+...+.++++++++.|-.++..+...
T Consensus       154 ~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  154 WLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSH  207 (228)
T ss_dssp             HHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence            9988865433 1111111    34677888888899999999988888887643

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.45  E-value=0.026  Score=54.30  Aligned_cols=245  Identities=16%  Similarity=0.155  Sum_probs=163.0

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhc-----Ch----hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHH
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARD-----SD----KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHE  172 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~-----~~----~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~  172 (418)
                      ..++.|+..|.-.+.+..  ...+.-|..+...     +.    .--+.+++.++++.|++-+..-+++.. ....-...
T Consensus       125 n~V~slL~LLgHeNtDI~--iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk-eea~gv~~  201 (536)
T KOG2734|consen  125 NAVQSLLELLGHENTDIA--IAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK-EEADGVHN  201 (536)
T ss_pred             ccHHHHHHHhcCCCchhH--HHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch-hhhhhhHH
Confidence            345677777766554433  5566666676633     22    234456778999999998865432111 02233456


Q ss_pred             HHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh
Q 014817          173 SLALLVMFPLTETECMEIASDADKITSLSSLLFHS--SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK  250 (418)
Q Consensus       173 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~  250 (418)
                      ++.++-|+..-.++....+++.|.+.-|+.-+...  -..-+.+|..+|.-+.  ...++++...+. ..++..|++-+.
T Consensus       202 ~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaill--q~s~e~~~~~~~-l~GiD~lL~~la  278 (536)
T KOG2734|consen  202 TLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILL--QNSDENRKLLGP-LDGIDVLLRQLA  278 (536)
T ss_pred             HHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHh--ccCchhhhhhcC-cccHHHHHhhcc
Confidence            67777777765556677777788777766655322  2455677888888885  555668888876 456777776553


Q ss_pred             ----cCCC---ChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH---hHHHHH
Q 014817          251 ----NLSS---YPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP---AGCAEF  320 (418)
Q Consensus       251 ----~~~~---~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~---~~~~~i  320 (418)
                          +++.   ..+..++....|..+-....|+.+++...+++...-+++. .......++++|-.+..++   .+...+
T Consensus       279 ~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~-Kk~sr~SalkvLd~am~g~~gt~~C~kf  357 (536)
T KOG2734|consen  279 VYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE-KKVSRGSALKVLDHAMFGPEGTPNCNKF  357 (536)
T ss_pred             hhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH-HHHhhhhHHHHHHHHHhCCCchHHHHHH
Confidence                2211   2356677888888888889999999999898887777765 4455678999998777554   467778


Q ss_pred             HhccCChHHHHHHHhc----------CChHHHHHHHHHHHHHhc
Q 014817          321 AEHALTVPLLVKTILK----------ISDRATEYAAGALAALCS  354 (418)
Q Consensus       321 ~~~~g~i~~Lv~~l~~----------~~~~~~~~A~~~L~~l~~  354 (418)
                      ++. +|+..+......          .-....++.+.+|+.+-.
T Consensus       358 Ve~-lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~  400 (536)
T KOG2734|consen  358 VEI-LGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLR  400 (536)
T ss_pred             HHH-HhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHH
Confidence            884 888888777652          233445788888888765

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.42  E-value=0.00011  Score=64.21  Aligned_cols=53  Identities=21%  Similarity=0.451  Sum_probs=46.7

Q ss_pred             CcccCcCccccccCCe----ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcc
Q 014817           16 YHFRCPISLELMCDPV----TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIP   69 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~   69 (418)
                      ..|.||+|.+.+.+.+    +-+|||+|+..|.++.... ...||+|+.++...++++
T Consensus       220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~  276 (303)
T KOG3039|consen  220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIG  276 (303)
T ss_pred             cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEe
Confidence            5689999999999976    5589999999999999874 789999999999888765

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.0031  Score=62.10  Aligned_cols=227  Identities=19%  Similarity=0.159  Sum_probs=145.8

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhc-ccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIA-SDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG  225 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i-~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~  225 (418)
                      ..+-|..+|++.       +.+|+..+=.+|.++-..- .+.... --...++.++..+.++.++++..|..-|..+.  
T Consensus       209 ~ldGLf~~LsD~-------s~eVr~~~~t~l~~fL~eI-~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV--  278 (675)
T KOG0212|consen  209 LLDGLFNMLSDS-------SDEVRTLTDTLLSEFLAEI-RSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFV--  278 (675)
T ss_pred             HHHHHHHHhcCC-------cHHHHHHHHHHHHHHHHHH-hcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHh--
Confidence            455666777665       5777766555555443221 112222 23467899999999999999999988888885  


Q ss_pred             ccchhhhhHhhchhhhHHHHHHHhhcCCCChh-hhHHHH---HHHHHHccccccHHHHHHc-CchHHHHHHhcCCCcccH
Q 014817          226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPR-GLKVGI---KALFALCLVKQTRYKAVAA-GAAETLVDRLADFDKCDA  300 (418)
Q Consensus       226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~-~~~~a~---~aL~~L~~~~~n~~~i~~~-G~v~~Lv~lL~~~~~~~~  300 (418)
                      .-...  ..+.-..|++..++.++.+.  .+. .+..+.   ..|..+.+....... ++- -.+..|...+.+...+.+
T Consensus       279 ~i~g~--~~l~~~s~il~~iLpc~s~~--e~~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tr  353 (675)
T KOG0212|consen  279 KIPGR--DLLLYLSGILTAILPCLSDT--EEMSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETR  353 (675)
T ss_pred             cCCCc--chhhhhhhhhhhcccCCCCC--ccccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHH
Confidence            22221  22222356777777777765  332 333322   235555554443333 443 367777788887777778


Q ss_pred             HHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHH---h
Q 014817          301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLV---Q  377 (418)
Q Consensus       301 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll---~  377 (418)
                      ..++.-+..|-....+.-....+ ...+.|++-|++.++.+-..++..+.++|.. ++..      +..+.+..+|   .
T Consensus       354 i~~L~Wi~~l~~~~p~ql~~h~~-~if~tLL~tLsd~sd~vvl~~L~lla~i~~s-~~~~------~~~~fl~sLL~~f~  425 (675)
T KOG0212|consen  354 IAVLNWIILLYHKAPGQLLVHND-SIFLTLLKTLSDRSDEVVLLALSLLASICSS-SNSP------NLRKFLLSLLEMFK  425 (675)
T ss_pred             HHHHHHHHHHHhhCcchhhhhcc-HHHHHHHHhhcCchhHHHHHHHHHHHHHhcC-cccc------cHHHHHHHHHHHHh
Confidence            88887777777655555555553 7888999999999999999999999999993 2222      3344454444   3


Q ss_pred             hCCCHHHHHHHHHHHHHHHh
Q 014817          378 SDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       378 ~~~~~~~~~~A~~~L~~l~~  397 (418)
                      .+ ..-.+..+..++|.|+.
T Consensus       426 e~-~~~l~~Rg~lIIRqlC~  444 (675)
T KOG0212|consen  426 ED-TKLLEVRGNLIIRQLCL  444 (675)
T ss_pred             hh-hHHHHhhhhHHHHHHHH
Confidence            44 66677788888888876

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.40  E-value=0.0013  Score=50.79  Aligned_cols=67  Identities=16%  Similarity=0.115  Sum_probs=56.6

Q ss_pred             cHHHHHHHHHHHh-cCHhHHHHHHhccCChHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 014817          299 DAERALATVELLC-RIPAGCAEFAEHALTVPLLVKTILK--ISDRATEYAAGALAALCSASERCQRDAVSA  366 (418)
Q Consensus       299 ~~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~  366 (418)
                      .+...+.+|.+|+ .+...+..+++. |+++.++....-  .+|-++|+|+.++.+||.+++++++.+.+.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            3567788999999 677889999986 889999998644  799999999999999999999988866553

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.40  E-value=0.0077  Score=58.41  Aligned_cols=206  Identities=18%  Similarity=0.123  Sum_probs=142.2

Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc
Q 014817          196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT  275 (418)
Q Consensus       196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n  275 (418)
                      ..+.+..++-+.+.++|..+.++++++   -.+.+.-..+.. .+.-..++.-|.....+...++.|++.++.+....++
T Consensus        26 ~~~~i~~~lL~~~~~vraa~yRilRy~---i~d~~~l~~~~~-l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~  101 (371)
T PF14664_consen   26 FGERIQCMLLSDSKEVRAAGYRILRYL---ISDEESLQILLK-LHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKG  101 (371)
T ss_pred             HHHHHHHHHCCCcHHHHHHHHHHHHHH---HcCHHHHHHHHH-cCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCC
Confidence            344444444455599999999999999   455555555544 4555556666766533667899999999998766544


Q ss_pred             HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          276 RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       276 ~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      ... +-.|++..++.+..+.+...+..|+.+|..|+- +++   .+.. .||+..|++.+..+.....+..+.++..+-.
T Consensus       102 ~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~---lv~~-~gG~~~L~~~l~d~~~~~~~~l~~~lL~lLd  176 (371)
T PF14664_consen  102 PKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPE---LVAE-CGGIRVLLRALIDGSFSISESLLDTLLYLLD  176 (371)
T ss_pred             ccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHH---HHHH-cCCHHHHHHHHHhccHhHHHHHHHHHHHHhC
Confidence            333 366789999999998888999999999998884 333   3334 6999999999988766678888888888776


Q ss_pred             CCHHHHHHHHhcChHHHHHHHHhhC------CCH--HHHHHHHHHHHHHHhhCCCCCCCCCCCCC
Q 014817          355 ASERCQRDAVSAGVLTQLLLLVQSD------CTD--RAKRKAQLLLKLLRDSWPQDSIGNSDDFA  411 (418)
Q Consensus       355 ~~~~~~~~~~~~g~i~~L~~ll~~~------~~~--~~~~~A~~~L~~l~~~~~~~~~~~~~~~~  411 (418)
                       +|..|+-+...--++.++.-....      .+.  ..-++++.++..+-+.|.+=-.+...||+
T Consensus       177 -~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~  240 (371)
T PF14664_consen  177 -SPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFR  240 (371)
T ss_pred             -CcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCch
Confidence             677777555433344444444221      122  34456777888888888866566666653

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.38  E-value=0.00029  Score=44.71  Aligned_cols=39  Identities=23%  Similarity=0.220  Sum_probs=35.8

Q ss_pred             cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817          273 KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC  311 (418)
Q Consensus       273 ~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~  311 (418)
                      ++++..+++.|+++.|+++|.+++..++..++++|++|+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347888999999999999999889999999999999987

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=97.38  E-value=0.017  Score=53.29  Aligned_cols=223  Identities=17%  Similarity=0.123  Sum_probs=153.2

Q ss_pred             HHHHHHHHHhcCCCChhHHHhhcc-cCCchHHHHHHhcC--CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817          169 LAHESLALLVMFPLTETECMEIAS-DADKITSLSSLLFH--SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV  245 (418)
Q Consensus       169 v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L  245 (418)
                      .+--|+.+|.++.... +.|..+. +...-..++++++.  |..+.+.+..-.++-|   +.+....+.|-.-...+.-|
T Consensus       165 Trlfav~cl~~l~~~~-e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~l---Tf~~~~aqdi~K~~dli~dl  240 (432)
T COG5231         165 TRLFAVSCLSNLEFDV-EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWIL---TFSKECAQDIDKMDDLINDL  240 (432)
T ss_pred             HHHHHHHHHhhhhhhH-HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHH---hcCHHHHHHHHHHHHHHHHH
Confidence            4566788888988777 5566554 45556778888875  5689999999999999   78888776665445678888


Q ss_pred             HHHhhcCCCChhhhHHHHHHHHHHccc--cccHHHHHHcCchHHHHHHhcCC---CcccHHH---HHHHHH----HHhcC
Q 014817          246 IDILKNLSSYPRGLKVGIKALFALCLV--KQTRYKAVAAGAAETLVDRLADF---DKCDAER---ALATVE----LLCRI  313 (418)
Q Consensus       246 v~lL~~~~~~~~~~~~a~~aL~~L~~~--~~n~~~i~~~G~v~~Lv~lL~~~---~~~~~~~---a~~~L~----~L~~~  313 (418)
                      +++.+... ...+.+-+++.+.|++..  ......+.-.|-+..-+++|..+   |.++...   .-..|.    .|+.-
T Consensus       241 i~iVk~~~-keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~f  319 (432)
T COG5231         241 IAIVKERA-KEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIF  319 (432)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            88888764 567888899999999863  24455555566555566666532   3333221   111111    11111


Q ss_pred             ------------------------HhHHHHHHh-ccCChHHHHHHHhcCChH-HHHHHHHHHHHHhcCCHHHHHHHHhcC
Q 014817          314 ------------------------PAGCAEFAE-HALTVPLLVKTILKISDR-ATEYAAGALAALCSASERCQRDAVSAG  367 (418)
Q Consensus       314 ------------------------~~~~~~i~~-~~g~i~~Lv~~l~~~~~~-~~~~A~~~L~~l~~~~~~~~~~~~~~g  367 (418)
                                              ..+...+.+ ....+..|.++++..++. .-..|+.=+..+....|+.+..+.+.|
T Consensus       320 D~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~Kyg  399 (432)
T COG5231         320 DNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLSKYG  399 (432)
T ss_pred             HHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHHHhh
Confidence                                    112222222 123566777778775555 456777777888888999999999999


Q ss_pred             hHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          368 VLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       368 ~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      +=+.+++++.++ ++++|-.|..+++.+-.
T Consensus       400 ~k~~im~L~nh~-d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         400 VKEIIMNLINHD-DDDVKFEALQALQTCIS  428 (432)
T ss_pred             hHHHHHHHhcCC-CchhhHHHHHHHHHHHh
Confidence            999999999777 99999999999887643

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.37  E-value=0.00019  Score=64.07  Aligned_cols=50  Identities=20%  Similarity=0.257  Sum_probs=41.2

Q ss_pred             CCCcccCcCccccccCCeec-CCCCcccHHHHHHHHH-cCCCCCCCCCCCCC
Q 014817           14 IPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVA-TGNTTCPVTRSPLT   63 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~-~~~~~cp~~~~~l~   63 (418)
                      -..+-.||+|++.-..|.+. +|||.||.-||..-.. ..+.+||.|+.+..
T Consensus       236 ~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             ccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            34456899999999999988 6999999999999654 34789999987653

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.33  E-value=0.013  Score=57.88  Aligned_cols=239  Identities=14%  Similarity=0.089  Sum_probs=159.4

Q ss_pred             cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc-cCCchHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 014817          145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIAS-DADKITSLSSLLFHSSIEVRVNSAALIEIVL  223 (418)
Q Consensus       145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~  223 (418)
                      .+.||.|-.-+..-       ++..+...+..|..|-.-.  ..+.+. -...++-|...|...+.++|..+-.+|.++.
T Consensus       166 ~~~ipLL~eriy~~-------n~~tR~flv~Wl~~Lds~P--~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL  236 (675)
T KOG0212|consen  166 PEFIPLLRERIYVI-------NPMTRQFLVSWLYVLDSVP--DLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFL  236 (675)
T ss_pred             HHHHHHHHHHHhcC-------CchHHHHHHHHHHHHhcCC--cHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence            34555555555443       4666777777777553322  133332 3567788889999999999988777777774


Q ss_pred             hcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcc-cHH-
Q 014817          224 AGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKC-DAE-  301 (418)
Q Consensus       224 ~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~-~~~-  301 (418)
                        ..-. ++.........++.|+.-+.+.  ++..+..|+.-|.....-..+..-.--+|++..++.++.+.+.. +.+ 
T Consensus       237 --~eI~-s~P~s~d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~  311 (675)
T KOG0212|consen  237 --AEIR-SSPSSMDYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEY  311 (675)
T ss_pred             --HHHh-cCccccCcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHH
Confidence              2211 1222213345788999999988  88999888887777766555544445578888888888765543 333 


Q ss_pred             --HHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC
Q 014817          302 --RALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD  379 (418)
Q Consensus       302 --~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~  379 (418)
                        ..-..|..+...+...+.+-- ...+..+.+.++++....+-.++.-+..+-...| ..........+..|+.-|+..
T Consensus       312 a~~~n~~l~~l~s~~~~~~~id~-~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p-~ql~~h~~~if~tLL~tLsd~  389 (675)
T KOG0212|consen  312 AQMVNGLLLKLVSSERLKEEIDY-GSIIEVLTKYLSDDREETRIAVLNWIILLYHKAP-GQLLVHNDSIFLTLLKTLSDR  389 (675)
T ss_pred             HHHHHHHHHHHHhhhhhccccch-HHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCc-chhhhhccHHHHHHHHhhcCc
Confidence              233345666666666555332 3567788888888888888888877777776333 233344567888888888666


Q ss_pred             CCHHHHHHHHHHHHHHHhhCC
Q 014817          380 CTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       380 ~~~~~~~~A~~~L~~l~~~~~  400 (418)
                       ++.+...+..++..++...+
T Consensus       390 -sd~vvl~~L~lla~i~~s~~  409 (675)
T KOG0212|consen  390 -SDEVVLLALSLLASICSSSN  409 (675)
T ss_pred             -hhHHHHHHHHHHHHHhcCcc
Confidence             89999999999999998754

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.00011  Score=66.31  Aligned_cols=48  Identities=21%  Similarity=0.281  Sum_probs=42.4

Q ss_pred             cCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014817           19 RCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT   66 (418)
Q Consensus        19 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~   66 (418)
                      .|+||..-+--||.+.|+|.||.-||+--...+..+|++|+.++....
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~i   56 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDSTI   56 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcch
Confidence            499999999999999999999999999966655788999999987544

>PF04641 Rtf2: Rtf2 RING-finger

Probab=97.30  E-value=0.00021  Score=65.95  Aligned_cols=53  Identities=21%  Similarity=0.382  Sum_probs=42.7

Q ss_pred             CCCcccCcCccccccC---Ce-ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCc
Q 014817           14 IPYHFRCPISLELMCD---PV-TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLI   68 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~d---Pv-~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~   68 (418)
                      -...|.|||++..|..   -| +.+|||+|+..+|.+.-  ....||.|+.+|...+++
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI  166 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDII  166 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEE
Confidence            4667999999999954   23 34899999999999984  356799999999876654

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.30  E-value=8.4e-05  Score=62.71  Aligned_cols=45  Identities=18%  Similarity=0.212  Sum_probs=38.7

Q ss_pred             ccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      |.|-||++-++.||+..|||.||-.|..+-... ...|-+|++...
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~  241 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY  241 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence            999999999999999999999999987775554 577999987653

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.00015  Score=68.06  Aligned_cols=47  Identities=21%  Similarity=0.421  Sum_probs=40.3

Q ss_pred             ccCcCccccccCCe---ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817           18 FRCPISLELMCDPV---TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv---~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      +.|-||++-|++==   +++|+|.|=..||..|+.+...+||+|++....
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            68999999987543   679999999999999999866779999987643

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.00011  Score=75.19  Aligned_cols=47  Identities=28%  Similarity=0.542  Sum_probs=41.9

Q ss_pred             CCcccCcCccccccC-----CeecCCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817           15 PYHFRCPISLELMCD-----PVTVCTGQTYDRPSIESWVATGNTTCPVTRSPL   62 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~d-----Pv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l   62 (418)
                      ..+-.|+||.+.|..     |-.++|||.|...|+.+|+++ ..+||.|+..+
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~  340 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL  340 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence            346789999999999     788999999999999999997 78899999743

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.27  E-value=0.019  Score=60.61  Aligned_cols=229  Identities=14%  Similarity=0.028  Sum_probs=156.3

Q ss_pred             hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHH-hcCCCChhHHHhhcccCCchHH
Q 014817          121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALL-VMFPLTETECMEIASDADKITS  199 (418)
Q Consensus       121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L-~~l~~~~~~~~~~i~~~g~i~~  199 (418)
                      |.+||.-|.+...-.+=.-..-..-|+.|-++++|.++.       .|.+-.-+-+= ..|+.+. .++..+++.++-.-
T Consensus       487 RlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a-------~ELrpiLVFIWAKILAvD~-SCQ~dLvKe~g~~Y  558 (1387)
T KOG1517|consen  487 RLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSA-------RELRPILVFIWAKILAVDP-SCQADLVKENGYKY  558 (1387)
T ss_pred             HHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccch-------HhhhhhHHHHHHHHHhcCc-hhHHHHHhccCcee
Confidence            556666666665444433444455799999999998873       44332222221 2556665 78888888777777


Q ss_pred             HHHHhcC-C--CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc-ccc
Q 014817          200 LSSLLFH-S--SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV-KQT  275 (418)
Q Consensus       200 Lv~~L~~-~--~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~-~~n  275 (418)
                      .+++|.. +  +++-|..|+.+|..+.  ....-..+.-.+ .+.|..-+..|.++. .+-.+.-.+-+|..|=.+ +++
T Consensus       559 F~~vL~~~~~~~~EqrtmaAFVLAviv--~nf~lGQ~acl~-~~li~iCle~lnd~~-~pLLrQW~~icLG~LW~d~~~A  634 (1387)
T KOG1517|consen  559 FLQVLDPSQAIPPEQRTMAAFVLAVIV--RNFKLGQKACLN-GNLIGICLEHLNDDP-EPLLRQWLCICLGRLWEDYDEA  634 (1387)
T ss_pred             EEEEecCcCCCCHHHHHHHHHHHHHHH--cccchhHHHhcc-ccHHHHHHHHhcCCc-cHHHHHHHHHHHHHHhhhcchh
Confidence            7777766 3  4688889999999995  333333333323 567777778888753 577888889999999755 668


Q ss_pred             HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-----HhHHHHH------------Hhc--cCChHHHHHHHhc
Q 014817          276 RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-----PAGCAEF------------AEH--ALTVPLLVKTILK  336 (418)
Q Consensus       276 ~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-----~~~~~~i------------~~~--~g~i~~Lv~~l~~  336 (418)
                      |..=.+.++.+.|+.+|.++-++++..|+-+|..+.++     ++....+            +++  +.+...++.+++.
T Consensus       635 rw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsd  714 (1387)
T KOG1517|consen  635 RWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSD  714 (1387)
T ss_pred             hhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhc
Confidence            88888999999999999998899999999999888763     2222222            111  0112366666777


Q ss_pred             CChHHHHHHHHHHHHHhcCCHHHHH
Q 014817          337 ISDRATEYAAGALAALCSASERCQR  361 (418)
Q Consensus       337 ~~~~~~~~A~~~L~~l~~~~~~~~~  361 (418)
                      +++.++...+-+|..+..+......
T Consensus       715 gsplvr~ev~v~ls~~~~g~~~~~~  739 (1387)
T KOG1517|consen  715 GSPLVRTEVVVALSHFVVGYVSHLK  739 (1387)
T ss_pred             cchHHHHHHHHHHHHHHHhhHHHhH
Confidence            8888888777778777775544433

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.24  E-value=0.0094  Score=49.91  Aligned_cols=130  Identities=15%  Similarity=0.115  Sum_probs=102.3

Q ss_pred             hhcccCCchHHHHHHhcCCC------HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817          189 EIASDADKITSLSSLLFHSS------IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG  262 (418)
Q Consensus       189 ~~i~~~g~i~~Lv~~L~~~~------~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a  262 (418)
                      ..+.+.||+..|++++.++.      .+....+..++.+|   ..+......... ..+|...+..+.....+..+...|
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eL---MeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~s   80 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVEL---MEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRS   80 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHH---HhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHH
Confidence            35667889999999998886      47778888889998   677665555544 569999999998764468899999


Q ss_pred             HHHHHHHccccccHHHHHHc-CchHHHHHHhcCCCcccHHHHHHHHHHHh--cCHhHHHHHHh
Q 014817          263 IKALFALCLVKQTRYKAVAA-GAAETLVDRLADFDKCDAERALATVELLC--RIPAGCAEFAE  322 (418)
Q Consensus       263 ~~aL~~L~~~~~n~~~i~~~-G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~--~~~~~~~~i~~  322 (418)
                      +..|-++..++......++. =-++.|+..|...+.+++.+++.++-.|-  .+++.|+.+.+
T Consensus        81 LaILEs~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i~~  143 (160)
T PF11841_consen   81 LAILESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEIAE  143 (160)
T ss_pred             HHHHHHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHHHH
Confidence            99999999998887777765 46899999999999999999999887666  23444444444

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.0016  Score=63.70  Aligned_cols=185  Identities=9%  Similarity=-0.001  Sum_probs=130.0

Q ss_pred             HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHH
Q 014817          122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLS  201 (418)
Q Consensus       122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv  201 (418)
                      ..++..|..+++.-...|.-+.++.+++.|+++|+.++       ..+.-.++..+.|+...-+..+..+.+.|.|..|+
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Pe-------imi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~  479 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPE-------IMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLV  479 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCcc-------ceeeccchhhhhheeeeccchHHHHHHhhHHHHHH
Confidence            34455555665554556667777889999999998763       34445566777888776656788999999999999


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcccchhhh---hHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-cc--
Q 014817          202 SLLFHSSIEVRVNSAALIEIVLAGMRSQELR---AQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-QT--  275 (418)
Q Consensus       202 ~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n--  275 (418)
                      ..+.+.+...|.+..|+|+++   ..+.++-   +.++  .-+++.++.+.+++  .-.++...+..|+|+.-+. .|  
T Consensus       480 ~~v~sKDdaLqans~wvlrHl---myncq~~ekf~~La--kig~~kvl~~~NDp--c~~vq~q~lQilrNftc~~~knEk  552 (743)
T COG5369         480 NLVMSKDDALQANSEWVLRHL---MYNCQKNEKFKFLA--KIGVEKVLSYTNDP--CFKVQHQVLQILRNFTCDTSKNEK  552 (743)
T ss_pred             HHhhcchhhhhhcchhhhhhh---hhcCcchhhhhhHH--hcCHHHHHHHhcCc--ccccHHHHHHHHHhcccccccccc
Confidence            999988899999999999999   5544433   3333  23689999999988  8899999999999997532 22  


Q ss_pred             -HHHHHHcC----chHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHH
Q 014817          276 -RYKAVAAG----AAETLVDRLADFDKCDAERALATVELLCRIPAGCAEF  320 (418)
Q Consensus       276 -~~~i~~~G----~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i  320 (418)
                       +.-+.+..    ....|++.+...++-..+..+.+|.+++.+++....+
T Consensus       553 skdv~~K~~p~~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~~l~~~  602 (743)
T COG5369         553 SKDVFIKATPRRYLFKRLIDKYEENNPMEILEGCYILVRNAACDDTLDYI  602 (743)
T ss_pred             cceeEEecChHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccchHHHH
Confidence             11111111    3445666666666655566677777777655554443

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=97.19  E-value=0.072  Score=51.18  Aligned_cols=187  Identities=19%  Similarity=0.150  Sum_probs=125.1

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      ..+..+++.+.+.+  ...+..|...+..+..           .-+++.+..+|.+.       ++.++..|+.+|+.+-
T Consensus        43 ~~~~~~~~~l~~~~--~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~-------~~~vr~~a~~aLg~~~  102 (335)
T COG1413          43 EAADELLKLLEDED--LLVRLSAAVALGELGS-----------EEAVPLLRELLSDE-------DPRVRDAAADALGELG  102 (335)
T ss_pred             hhHHHHHHHHcCCC--HHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCC-------CHHHHHHHHHHHHccC
Confidence            45667777776652  2234455555333321           23688899999877       5789999999888765


Q ss_pred             CChhHHHhhcccCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhh--
Q 014817          182 LTETECMEIASDADKITSLSSLLF-HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRG--  258 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~--  258 (418)
                      ..           ..++.|+..|. +.+..+|..++++|..+   . +          ...+.+|+.++.+.  ....  
T Consensus       103 ~~-----------~a~~~li~~l~~d~~~~vR~~aa~aL~~~---~-~----------~~a~~~l~~~l~~~--~~~~a~  155 (335)
T COG1413         103 DP-----------EAVPPLVELLENDENEGVRAAAARALGKL---G-D----------ERALDPLLEALQDE--DSGSAA  155 (335)
T ss_pred             Ch-----------hHHHHHHHHHHcCCcHhHHHHHHHHHHhc---C-c----------hhhhHHHHHHhccc--hhhhhh
Confidence            32           35899999998 58999999999999999   2 1          22478888888876  3222  


Q ss_pred             ----------hHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChH
Q 014817          259 ----------LKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVP  328 (418)
Q Consensus       259 ----------~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~  328 (418)
                                +..+..+|..          +-+.-.++.++..+.+.+..++..+..+|..+....        . ...+
T Consensus       156 ~~~~~~~~~~r~~a~~~l~~----------~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~--------~-~~~~  216 (335)
T COG1413         156 AALDAALLDVRAAAAEALGE----------LGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN--------V-EAAD  216 (335)
T ss_pred             hhccchHHHHHHHHHHHHHH----------cCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch--------h-hHHH
Confidence                      2222222221          123446788888998888888889999998877654        1 3456


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          329 LLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       329 ~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      .+...+...+..++..++.+|..+-.
T Consensus       217 ~l~~~~~~~~~~vr~~~~~~l~~~~~  242 (335)
T COG1413         217 LLVKALSDESLEVRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHhcCCCHHHHHHHHHHhcccCc
Confidence            66776777777777777766655443

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.18  E-value=0.00097  Score=42.25  Aligned_cols=40  Identities=25%  Similarity=0.212  Sum_probs=35.2

Q ss_pred             HhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          314 PAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       314 ~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      ++++..+.+ .|+++.|++++.++++.+++.|+++|.||+.
T Consensus         2 ~~~~~~i~~-~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVD-AGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHH-CCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            347778888 4999999999998899999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.00033  Score=64.07  Aligned_cols=49  Identities=31%  Similarity=0.535  Sum_probs=42.3

Q ss_pred             CCCcccCcCccccccCCeecC-CCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           14 IPYHFRCPISLELMCDPVTVC-TGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      .|+.-.||+|.+--.+|-++. +|++||..||-.+..+ ++.||+|+.+..
T Consensus       297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~  346 (357)
T KOG0826|consen  297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS  346 (357)
T ss_pred             CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence            344568999999999999885 6999999999999984 899999987654

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.13  E-value=0.00025  Score=68.61  Aligned_cols=51  Identities=22%  Similarity=0.321  Sum_probs=43.2

Q ss_pred             CCcccCcCccccccCCeecCCCCcccHHHHHHHHHc----CCCCCCCCCCCCCCC
Q 014817           15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT----GNTTCPVTRSPLTDF   65 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~----~~~~cp~~~~~l~~~   65 (418)
                      ..+..|-+|.++-.||+..+|.|+|||-||.+|...    .+-+||.|...++-+
T Consensus       534 k~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  534 KGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             cCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            345689999999999999999999999999998642    356899999887654

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.12  E-value=0.039  Score=56.54  Aligned_cols=271  Identities=13%  Similarity=0.112  Sum_probs=163.9

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhh------cChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLAR------DSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV  178 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~------~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~  178 (418)
                      ..++..+....+....|..|+.+|.+-..      +++..|..     ++.+.++...++       +.+++..|...|.
T Consensus       175 taIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~-----iMqvvcEatq~~-------d~~i~~aa~~Clv  242 (859)
T KOG1241|consen  175 TAIVQGMRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNY-----IMQVVCEATQSP-------DEEIQVAAFQCLV  242 (859)
T ss_pred             HHHHhhccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhce-----eeeeeeecccCC-------cHHHHHHHHHHHH
Confidence            34555555444444457788888876432      12333332     333444444444       5789999999888


Q ss_pred             cCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh-----------------chhhh
Q 014817          179 MFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS-----------------NLDEI  241 (418)
Q Consensus       179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~-----------------~~~g~  241 (418)
                      .+..--.+.-..-+.......-+..+++.++++...+...=.+++  ...-+.....+                 .-.++
T Consensus       243 kIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWstic--eEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v  320 (859)
T KOG1241|consen  243 KIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTIC--EEEIDLAIEYGEAVDQGLPPSSKYFARQALQDV  320 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHh
Confidence            765322222222223334556677788999999998888777773  11111111100                 11367


Q ss_pred             HHHHHHHhhcC-C----CChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHH----hcCCCcccHHHHHHHHHHHhc
Q 014817          242 FEGVIDILKNL-S----SYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDR----LADFDKCDAERALATVELLCR  312 (418)
Q Consensus       242 i~~Lv~lL~~~-~----~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~l----L~~~~~~~~~~a~~~L~~L~~  312 (418)
                      +|.|+++|... .    ++-...++|..+|.-++...       +-..|++.+..    +.+++-.-++.++.++..+-.
T Consensus       321 ~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~-------~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~  393 (859)
T KOG1241|consen  321 VPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCV-------GDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILE  393 (859)
T ss_pred             hHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHh-------cccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhc
Confidence            88899988652 1    12245666666666665432       22344444444    445555566777777766665


Q ss_pred             CHh-H-HHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHH-HHHhcChHHHHHHHHhhCCCHHHHHHHH
Q 014817          313 IPA-G-CAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQR-DAVSAGVLTQLLLLVQSDCTDRAKRKAQ  389 (418)
Q Consensus       313 ~~~-~-~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~A~  389 (418)
                      .++ . ...++.  +++|.++.++..++..++.-+.|+|..++..-++.+. .....+.++.|+.=| .+ .+++-.+++
T Consensus       394 gp~~~~Lt~iV~--qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL-~D-ePrva~N~C  469 (859)
T KOG1241|consen  394 GPEPDKLTPIVI--QALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGL-ND-EPRVASNVC  469 (859)
T ss_pred             CCchhhhhHHHh--hhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHh-hh-CchHHHHHH
Confidence            443 3 334443  8899999999988889999999999999986655433 222234455554444 34 689999999


Q ss_pred             HHHHHHHhhCC
Q 014817          390 LLLKLLRDSWP  400 (418)
Q Consensus       390 ~~L~~l~~~~~  400 (418)
                      |.+-+|++...
T Consensus       470 WAf~~Laea~~  480 (859)
T KOG1241|consen  470 WAFISLAEAAY  480 (859)
T ss_pred             HHHHHHHHHHH
Confidence            99999997543

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.10  E-value=0.0014  Score=50.61  Aligned_cols=68  Identities=9%  Similarity=0.080  Sum_probs=59.5

Q ss_pred             hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhccc
Q 014817          121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASD  193 (418)
Q Consensus       121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~  193 (418)
                      +..-++.|.+++..++.+++.+++.|++|.+++.-.-++.     +|-+++.|+.++++|..+..+++..|.+
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~-----nP~irEwai~aiRnL~e~n~eNQ~~I~~   70 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDH-----NPFIREWAIFAIRNLCEGNPENQEFIAQ   70 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcc-----cHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence            3567888999999999999999999999999988765543     8999999999999999998888888763

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.10  E-value=0.052  Score=55.51  Aligned_cols=146  Identities=12%  Similarity=0.075  Sum_probs=99.8

Q ss_pred             HHHHHhhcCCCChhhhHHHHHHHHHHccccccHHH---HHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHH
Q 014817          244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYK---AVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEF  320 (418)
Q Consensus       244 ~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~---i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i  320 (418)
                      ..+..|++.  ++.++..|+.++..|+..-.++..   +...|+  .|.+.|....+++.-..+++|..+...-..-...
T Consensus       803 tiL~rLnnk--sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nvigm~km~  878 (1172)
T KOG0213|consen  803 TILWRLNNK--SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT  878 (1172)
T ss_pred             HHHHHhcCC--ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence            344556677  788999999999988866554433   333444  3567777778888888888887776422111111


Q ss_pred             HhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH---HHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          321 AEHALTVPLLVKTILKISDRATEYAAGALAALCSASERC---QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       321 ~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~---~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      ---.+.+|.|..+|++....++++.+..+..||.+.++.   |+-|   .+---|+++|.++ +...|++|...+.-+++
T Consensus       879 pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWM---RIcfeLlelLkah-kK~iRRaa~nTfG~Iak  954 (1172)
T KOG0213|consen  879 PPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWM---RICFELLELLKAH-KKEIRRAAVNTFGYIAK  954 (1172)
T ss_pred             CChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHH---HHHHHHHHHHHHH-HHHHHHHHHhhhhHHHH
Confidence            111378999999999999999999999999999965552   2222   2334466778788 88888888765554443

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.00037  Score=64.65  Aligned_cols=46  Identities=24%  Similarity=0.618  Sum_probs=39.6

Q ss_pred             CcccCcCccccccCC-------------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817           16 YHFRCPISLELMCDP-------------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPL   62 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dP-------------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l   62 (418)
                      .|-.|-||++.|-.|             =-++|||.+--+|+..|.++ ..+||+|+.++
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~  344 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV  344 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence            467899999985443             47899999999999999997 78999999884

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.21  Score=46.55  Aligned_cols=263  Identities=16%  Similarity=0.123  Sum_probs=165.0

Q ss_pred             HHHHHHHHHhhhcChhhh--h--HHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCch
Q 014817          122 LSALRRLRGLARDSDKNR--S--LISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKI  197 (418)
Q Consensus       122 ~~Al~~L~~l~~~~~~~~--~--~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i  197 (418)
                      .-|.+.+..+..+.+.|.  .  ..+.+|+.+.++..+...       +.+|...|...|..++... ..-..+..+..+
T Consensus       100 iLackqigcilEdcDtnaVseillvvNaeilklildcIgge-------ddeVAkAAiesikrialfp-aaleaiFeSell  171 (524)
T KOG4413|consen  100 ILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGE-------DDEVAKAAIESIKRIALFP-AALEAIFESELL  171 (524)
T ss_pred             hhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCC-------cHHHHHHHHHHHHHHHhcH-HHHHHhcccccC
Confidence            445666666655544222  1  234689999999999776       4688999999999998877 556666666555


Q ss_pred             HHH--HHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc
Q 014817          198 TSL--SSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT  275 (418)
Q Consensus       198 ~~L--v~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n  275 (418)
                      ..+  +.+--..+.-+|......+..+.  +...+..... ...|.+..|..=+.... +.-++.++......|+...-.
T Consensus       172 DdlhlrnlaakcndiaRvRVleLIieif--SiSpesanec-kkSGLldlLeaElkGte-DtLVianciElvteLaeteHg  247 (524)
T KOG4413|consen  172 DDLHLRNLAAKCNDIARVRVLELIIEIF--SISPESANEC-KKSGLLDLLEAELKGTE-DTLVIANCIELVTELAETEHG  247 (524)
T ss_pred             ChHHHhHHHhhhhhHHHHHHHHHHHHHH--hcCHHHHhHh-hhhhHHHHHHHHhcCCc-ceeehhhHHHHHHHHHHHhhh
Confidence            544  22333445666777777788885  4455544444 34688887777776533 778889999999999998888


Q ss_pred             HHHHHHcCchHHHHHHhcCCC--cccHHHHH----HHHHHHhcCHhHHHHHHhc-cCChHHHHHHHhcCChHHHHHHHHH
Q 014817          276 RYKAVAAGAAETLVDRLADFD--KCDAERAL----ATVELLCRIPAGCAEFAEH-ALTVPLLVKTILKISDRATEYAAGA  348 (418)
Q Consensus       276 ~~~i~~~G~v~~Lv~lL~~~~--~~~~~~a~----~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~~l~~~~~~~~~~A~~~  348 (418)
                      +.-+...|.|+.+-.++...+  +--.-.++    ..+.+++-.+-.-+++++. .-+|....+.+...++..++.|+.+
T Consensus       248 reflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDa  327 (524)
T KOG4413|consen  248 REFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDA  327 (524)
T ss_pred             hhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHH
Confidence            888889999999999987433  32222232    3333333222122222221 1124445566666899999999999


Q ss_pred             HHHHhcCCHHHHHHHHhcCh--HHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          349 LAALCSASERCQRDAVSAGV--LTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       349 L~~l~~~~~~~~~~~~~~g~--i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      +..+.. +.+-.+.+.+.|-  .+.++--..+..-..-++.+...|.+++.
T Consensus       328 lGilGS-nteGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag  377 (524)
T KOG4413|consen  328 LGILGS-NTEGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG  377 (524)
T ss_pred             HHhccC-CcchhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence            988877 5555666666553  44443333332122334455556666554

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.98  E-value=0.062  Score=53.93  Aligned_cols=249  Identities=12%  Similarity=0.055  Sum_probs=156.3

Q ss_pred             hhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHH-hcCCCChhHHHhhcccCCch
Q 014817          119 GSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALL-VMFPLTETECMEIASDADKI  197 (418)
Q Consensus       119 ~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L-~~l~~~~~~~~~~i~~~g~i  197 (418)
                      ..+..|...+..+..+.  .-..+.+.+++..|...+.+-...   -+++..-.|..+. .+|.        ...++..+
T Consensus       149 ~~~~~aa~~~ag~v~g~--~i~~~~~~~~l~~l~~ai~dk~~~---~~re~~~~a~~~~~~~Lg--------~~~EPyiv  215 (569)
T KOG1242|consen  149 AERAGAAYGLAGLVNGL--GIESLKEFGFLDNLSKAIIDKKSA---LNREAALLAFEAAQGNLG--------PPFEPYIV  215 (569)
T ss_pred             HHHhhhhHHHHHHHcCc--HHhhhhhhhHHHHHHHHhcccchh---hcHHHHHHHHHHHHHhcC--------CCCCchHH
Confidence            34566777777776543  344466677888888777554210   0222111111111 1222        22366777


Q ss_pred             HHHHHHhcC---CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc
Q 014817          198 TSLSSLLFH---SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ  274 (418)
Q Consensus       198 ~~Lv~~L~~---~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~  274 (418)
                      +.+..+|.+   ....+|..|..+...+.  ......    +. .-.++.++.-+...  .-....+++..|..++....
T Consensus       216 ~~lp~il~~~~d~~~~Vr~Aa~~a~kai~--~~~~~~----aV-K~llpsll~~l~~~--kWrtK~aslellg~m~~~ap  286 (569)
T KOG1242|consen  216 PILPSILTNFGDKINKVREAAVEAAKAIM--RCLSAY----AV-KLLLPSLLGSLLEA--KWRTKMASLELLGAMADCAP  286 (569)
T ss_pred             hhHHHHHHHhhccchhhhHHHHHHHHHHH--HhcCcc----hh-hHhhhhhHHHHHHH--hhhhHHHHHHHHHHHHHhch
Confidence            777777754   35788888777777773  112111    11 23566666655555  57889999999999998888


Q ss_pred             cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          275 TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       275 n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      ......-..++|.+.+.|.+.++++++.+..+|..++.--++.. |-   -.+|.|+..+...+..+. .++..|..-..
T Consensus       287 ~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~d-I~---~~ip~Lld~l~dp~~~~~-e~~~~L~~ttF  361 (569)
T KOG1242|consen  287 KQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPD-IQ---KIIPTLLDALADPSCYTP-ECLDSLGATTF  361 (569)
T ss_pred             HHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHH-HH---HHHHHHHHHhcCcccchH-HHHHhhcceee
Confidence            88888889999999999999999999999999999886555544 22   347788888866554433 33333333111


Q ss_pred             ---CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          355 ---ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       355 ---~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                         -++.....     .++.|.+-+... +...+++++.++.|++..++
T Consensus       362 V~~V~~psLal-----mvpiL~R~l~eR-st~~kr~t~~IidNm~~Lve  404 (569)
T KOG1242|consen  362 VAEVDAPSLAL-----MVPILKRGLAER-STSIKRKTAIIIDNMCKLVE  404 (569)
T ss_pred             eeeecchhHHH-----HHHHHHHHHhhc-cchhhhhHHHHHHHHHHhhc
Confidence               11111221     334444444444 67788999999999999875

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.91  E-value=0.57  Score=48.67  Aligned_cols=265  Identities=16%  Similarity=0.154  Sum_probs=155.0

Q ss_pred             HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccc------c--ccCCChhHHHHHHHHHhcCCCChhHHHhhccc
Q 014817          122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN------V--KTASSPELAHESLALLVMFPLTETECMEIASD  193 (418)
Q Consensus       122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~------~--~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~  193 (418)
                      ..++.-+.++|+.++++-..+.+  .++.++..|+.-..      +  .+-.+|-+|...+..|+.|..++.+..+.+-+
T Consensus       197 ~~~l~l~~e~c~~~~~~l~~fr~--l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~D  274 (866)
T KOG1062|consen  197 IAGLHLITELCKISPDALSYFRD--LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMND  274 (866)
T ss_pred             eeHHHHHHHHHhcCHHHHHHHHH--HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHH
Confidence            34556666677766666666655  56777777743211      1  11147889999999999888776443322210


Q ss_pred             --------------CC---chHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhh----------H---
Q 014817          194 --------------AD---KITSLSSLLF-HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEI----------F---  242 (418)
Q Consensus       194 --------------~g---~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~----------i---  242 (418)
                                    .|   ..+.+..++. ..+...|..|+.+|..+.  ...+.|-..++. .+.          +   
T Consensus       275 iLaqvatntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL--~n~d~NirYvaL-n~L~r~V~~d~~avqrH  351 (866)
T KOG1062|consen  275 ILAQVATNTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFL--LNRDNNIRYVAL-NMLLRVVQQDPTAVQRH  351 (866)
T ss_pred             HHHHHHhcccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHh--cCCccceeeeeh-hhHHhhhcCCcHHHHHH
Confidence                          01   1122222222 245677888888888885  445555444432 111          1   


Q ss_pred             -HHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc--CHhHHH-
Q 014817          243 -EGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR--IPAGCA-  318 (418)
Q Consensus       243 -~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~--~~~~~~-  318 (418)
                       ..+++.|++.  |+..++.|+..++.|.... |...|     +..|+..|.+.+...+.....-+..++.  .++.+. 
T Consensus       352 r~tIleCL~Dp--D~SIkrralELs~~lvn~~-Nv~~m-----v~eLl~fL~~~d~~~k~~~as~I~~laEkfaP~k~W~  423 (866)
T KOG1062|consen  352 RSTILECLKDP--DVSIKRRALELSYALVNES-NVRVM-----VKELLEFLESSDEDFKADIASKIAELAEKFAPDKRWH  423 (866)
T ss_pred             HHHHHHHhcCC--cHHHHHHHHHHHHHHhccc-cHHHH-----HHHHHHHHHhccHHHHHHHHHHHHHHHHhcCCcchhH
Confidence             2466778887  8899999999998886444 44443     4567888877788888888877777773  223222 


Q ss_pred             -----HHHhcc------CChHHHHHHHhcCChHHHHHHHHHHHHHhcCC------HH------------HHH--------
Q 014817          319 -----EFAEHA------LTVPLLVKTILKISDRATEYAAGALAALCSAS------ER------------CQR--------  361 (418)
Q Consensus       319 -----~i~~~~------g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~------~~------------~~~--------  361 (418)
                           ++...+      .++..++.++.+......+.+..-|+.-...+      .+            .-.        
T Consensus       424 idtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~  503 (866)
T KOG1062|consen  424 IDTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANE  503 (866)
T ss_pred             HHHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCccc
Confidence                 222223      36677777777654444444444444322211      00            000        


Q ss_pred             ----HHHhcChHHHHHHHHhhC-CCHHHHHHHHHHHHHHHhhC
Q 014817          362 ----DAVSAGVLTQLLLLVQSD-CTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       362 ----~~~~~g~i~~L~~ll~~~-~~~~~~~~A~~~L~~l~~~~  399 (418)
                          .+-+..++..|..++.+. .+..+|..|..+|-.|+..-
T Consensus       504 ~~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSsr~  546 (866)
T KOG1062|consen  504 EEPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSSRF  546 (866)
T ss_pred             cCCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhhc
Confidence                122245788888888654 35777888888777777653

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.87  E-value=0.19  Score=51.31  Aligned_cols=265  Identities=12%  Similarity=0.117  Sum_probs=153.3

Q ss_pred             HHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh-hHH
Q 014817          109 NQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE-TEC  187 (418)
Q Consensus       109 ~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~  187 (418)
                      +.|.+++....-+.+|+-.|.++-+.+++   .+...+-...++.+|.+.       +..|...+...+-.|+... ++.
T Consensus       153 KlLvS~~~~~~vkqkaALclL~L~r~spD---l~~~~~W~~riv~LL~D~-------~~gv~ta~~sLi~~lvk~~p~~y  222 (938)
T KOG1077|consen  153 KLLVSGSSMDYVKQKAALCLLRLFRKSPD---LVNPGEWAQRIVHLLDDQ-------HMGVVTAATSLIEALVKKNPESY  222 (938)
T ss_pred             HHHhCCcchHHHHHHHHHHHHHHHhcCcc---ccChhhHHHHHHHHhCcc-------ccceeeehHHHHHHHHHcCCHHH
Confidence            44555543333345566666666655443   122235667788888765       3445555555555444322 233


Q ss_pred             HhhcccCCchHHHHHHhcC-------------CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC
Q 014817          188 MEIASDADKITSLSSLLFH-------------SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS  254 (418)
Q Consensus       188 ~~~i~~~g~i~~Lv~~L~~-------------~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~  254 (418)
                      +..+..  ++..|.++...             +.+=.+...+++|.++   ...++....... ..+++.++...+....
T Consensus       223 k~~~~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~---p~~~D~~~r~~l-~evl~~iLnk~~~~~~  296 (938)
T KOG1077|consen  223 KTCLPL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY---PTPEDPSTRARL-NEVLERILNKAQEPPK  296 (938)
T ss_pred             hhhHHH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC---CCCCCchHHHHH-HHHHHHHHhccccCcc
Confidence            322211  12222222111             2344556667777776   433333222211 2355555555553211


Q ss_pred             Chhh-----hHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChH
Q 014817          255 YPRG-----LKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVP  328 (418)
Q Consensus       255 ~~~~-----~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~  328 (418)
                      +..+     +.+.+--.-+|+.+ ++....+.+  ++..|-++|.+....++-.++..+..|+.+....+++..+   ..
T Consensus       297 ~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h---~d  371 (938)
T KOG1077|consen  297 SKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKH---QD  371 (938)
T ss_pred             ccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHH---HH
Confidence            1111     22222222344444 333333332  5778889999888999999999999999987777777766   67


Q ss_pred             HHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCCC
Q 014817          329 LLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQD  402 (418)
Q Consensus       329 ~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~~~  402 (418)
                      .++..|+. .+..+++.|+..|+.+|.  .++.+.     ++.-|+..|.+. +...|+.-.--...|++-+..+
T Consensus       372 ~Ii~sLkterDvSirrravDLLY~mcD--~~Nak~-----IV~elLqYL~tA-d~sireeivlKvAILaEKyAtD  438 (938)
T KOG1077|consen  372 TIINSLKTERDVSIRRRAVDLLYAMCD--VSNAKQ-----IVAELLQYLETA-DYSIREEIVLKVAILAEKYATD  438 (938)
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHhc--hhhHHH-----HHHHHHHHHhhc-chHHHHHHHHHHHHHHHHhcCC
Confidence            88888884 788899999999999997  333444     456677888776 8888887777777777765544

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.86  E-value=0.36  Score=49.50  Aligned_cols=250  Identities=10%  Similarity=0.104  Sum_probs=139.8

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhhc-ChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLARD-SDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT  183 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~  183 (418)
                      ..++..|+++-+  ..|-+|+..|.++.-. .+..|.      .+|.|+.-|.++       ++.|+-.|+.+++.|+..
T Consensus       147 ~Dv~tLL~sskp--YvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDp-------Dp~V~SAAV~VICELArK  211 (877)
T KOG1059|consen  147 DDVFTLLNSSKP--YVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDP-------DPSVVSAAVSVICELARK  211 (877)
T ss_pred             HHHHHHHhcCch--HHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCC-------CchHHHHHHHHHHHHHhh
Confidence            344555554422  2345566666555432 222222      356666666665       466777777777777665


Q ss_pred             hhHHHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817          184 ETECMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG  262 (418)
Q Consensus       184 ~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a  262 (418)
                      ++.+--.     .-|.+-++|... +.=+.........+|   +.-+.   .++.  ..+++|.+++++.. -....-.+
T Consensus       212 nPknyL~-----LAP~ffkllttSsNNWmLIKiiKLF~aL---tplEP---RLgK--KLieplt~li~sT~-AmSLlYEC  277 (877)
T KOG1059|consen  212 NPQNYLQ-----LAPLFYKLLVTSSNNWVLIKLLKLFAAL---TPLEP---RLGK--KLIEPITELMESTV-AMSLLYEC  277 (877)
T ss_pred             CCccccc-----ccHHHHHHHhccCCCeehHHHHHHHhhc---cccCc---hhhh--hhhhHHHHHHHhhH-HHHHHHHH
Confidence            4322222     234555555332 222333344444555   32222   4433  47888888888762 22333334


Q ss_pred             HHHHH--HHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCCh
Q 014817          263 IKALF--ALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISD  339 (418)
Q Consensus       263 ~~aL~--~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~  339 (418)
                      ..++.  +++....+....+.. +++.|-.++.+.|++++-..+-++..++. ++...++.      -..++++|...+.
T Consensus       278 vNTVVa~s~s~g~~d~~asiqL-CvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~------kdlIlrcL~DkD~  350 (877)
T KOG1059|consen  278 VNTVVAVSMSSGMSDHSASIQL-CVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAH------KDLILRCLDDKDE  350 (877)
T ss_pred             HHHheeehhccCCCCcHHHHHH-HHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHh------HHHHHHHhccCCc
Confidence            43333  333333333333332 56777777788899999999988888884 44333322      2467888888999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHh-hCCCHHHHHHHHHHHHHHHh
Q 014817          340 RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQ-SDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       340 ~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~A~~~L~~l~~  397 (418)
                      .++-.|+..|+.+..  +++..+     ++..|+..+. +.++.-.-+....++..+++
T Consensus       351 SIRlrALdLl~gmVs--kkNl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~  402 (877)
T KOG1059|consen  351 SIRLRALDLLYGMVS--KKNLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQ  402 (877)
T ss_pred             hhHHHHHHHHHHHhh--hhhHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence            999999999999886  444444     4566666554 33333333445566666554

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.86  E-value=0.15  Score=51.35  Aligned_cols=171  Identities=20%  Similarity=0.161  Sum_probs=107.6

Q ss_pred             hHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHH
Q 014817          168 ELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVID  247 (418)
Q Consensus       168 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~  247 (418)
                      .....++..|+.++... .-+-...-+..+|.+.+.|.+..+++|..+..+|..+   ...-+|.+ |   .-.+|.|++
T Consensus       269 rtK~aslellg~m~~~a-p~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~---~svidN~d-I---~~~ip~Lld  340 (569)
T KOG1242|consen  269 RTKMASLELLGAMADCA-PKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKF---GSVIDNPD-I---QKIIPTLLD  340 (569)
T ss_pred             hhHHHHHHHHHHHHHhc-hHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHH---HHhhccHH-H---HHHHHHHHH
Confidence            34566777777666544 3344555688999999999999999999999999999   55555555 3   237888998


Q ss_pred             HhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCc----hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhc
Q 014817          248 ILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGA----AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEH  323 (418)
Q Consensus       248 lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~----v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~  323 (418)
                      .+.+++  - -...+...|..-.....     +++-.    +|.|-+-+...+.++...++.+..|++.--+....+...
T Consensus       341 ~l~dp~--~-~~~e~~~~L~~ttFV~~-----V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapf  412 (569)
T KOG1242|consen  341 ALADPS--C-YTPECLDSLGATTFVAE-----VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPF  412 (569)
T ss_pred             HhcCcc--c-chHHHHHhhcceeeeee-----ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhh
Confidence            888762  1 22233333332221111     12223    344444445567788889999999998644333333211


Q ss_pred             -cCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          324 -ALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       324 -~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                       ...+|.|=..+....+.++..+.++|..+-.
T Consensus       413 l~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e  444 (569)
T KOG1242|consen  413 LPSLLPGLKENLDDAVPEVRAVAARALGALLE  444 (569)
T ss_pred             HHHHhhHHHHHhcCCChhHHHHHHHHHHHHHH
Confidence             1334444444444678999999999876655

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.85  E-value=0.021  Score=58.41  Aligned_cols=208  Identities=12%  Similarity=0.042  Sum_probs=128.3

Q ss_pred             ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817          146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG  225 (418)
Q Consensus       146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~  225 (418)
                      +.+|.|+++|...++.....+..+...|..+|..++..   .+..|+. -+++.+-+-+++++..-++.|+-+++.+..+
T Consensus       319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~---~~D~Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGSIl~g  394 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC---VGDDIVP-HVLPFIEENIQNPDWRNREAAVMAFGSILEG  394 (859)
T ss_pred             HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH---hcccchh-hhHHHHHHhcCCcchhhhhHHHHHHHhhhcC
Confidence            67889999996633221111333455565666555432   2333333 4556666677889999999999999999421


Q ss_pred             ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc--cHHHHHHcCchHHHHHHhcCCCcccHHHH
Q 014817          226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ--TRYKAVAAGAAETLVDRLADFDKCDAERA  303 (418)
Q Consensus       226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a  303 (418)
                       .+.+-...++  .+++|.++.++.++  +.-++..+.|+|..++..-.  .-......+.++.++.=|.+ .+.+..++
T Consensus       395 -p~~~~Lt~iV--~qalp~ii~lm~D~--sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~  468 (859)
T KOG1241|consen  395 -PEPDKLTPIV--IQALPSIINLMSDP--SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLND-EPRVASNV  468 (859)
T ss_pred             -CchhhhhHHH--hhhhHHHHHHhcCc--hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHH
Confidence             1222223332  57999999999977  78888999999999986543  12222335566666666654 57889999


Q ss_pred             HHHHHHHhcC--HhHHHH----HHh--ccCChHHHHHHHhc---CChHHHHHHHHHHHHHhcCCHHHHHHH
Q 014817          304 LATVELLCRI--PAGCAE----FAE--HALTVPLLVKTILK---ISDRATEYAAGALAALCSASERCQRDA  363 (418)
Q Consensus       304 ~~~L~~L~~~--~~~~~~----i~~--~~g~i~~Lv~~l~~---~~~~~~~~A~~~L~~l~~~~~~~~~~~  363 (418)
                      +|++.+|+..  +.....    ...  ....|..|++.-.+   .....+..|..+|..|...++.....+
T Consensus       469 CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~  539 (859)
T KOG1241|consen  469 CWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPM  539 (859)
T ss_pred             HHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHH
Confidence            9999999931  111111    111  00123333333322   345678899999999988666544443

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.85  E-value=0.0027  Score=43.33  Aligned_cols=55  Identities=20%  Similarity=0.073  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHH
Q 014817          209 IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFAL  269 (418)
Q Consensus       209 ~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L  269 (418)
                      +.+|..|+++|.+++  ....+.-... . ..+++.|+.+|+++  ++.++.+|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~--~~~~~~~~~~-~-~~~~~~L~~~L~d~--~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLA--EGCPELLQPY-L-PELLPALIPLLQDD--DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTT--TTTHHHHHHH-H-HHHHHHHHHHTTSS--SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHh--cccHHHHHHH-H-HHHHHHHHHHHcCC--CHHHHHHHHHHHhcC
Confidence            468999999999983  2333333333 2 56999999999988  789999999999876

...

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=96.80  E-value=0.00046  Score=65.21  Aligned_cols=35  Identities=9%  Similarity=0.306  Sum_probs=31.2

Q ss_pred             CCcccCcCccccccCCeecCCCCcccHHHHHHHHH
Q 014817           15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVA   49 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~   49 (418)
                      .+++.||||+..|+||++++|||+.||.|-..-+.
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            46789999999999999999999999999776543

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=96.79  E-value=0.09  Score=52.09  Aligned_cols=167  Identities=12%  Similarity=0.083  Sum_probs=114.9

Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC--ChhhhHHHHHHHHHHcccc
Q 014817          196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS--YPRGLKVGIKALFALCLVK  273 (418)
Q Consensus       196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~~~a~~aL~~L~~~~  273 (418)
                      ....+.+++.+|+...+..+...|..|   +.+......+.. ..++..|..+++++..  +.......++++..|-.+.
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sl---s~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehg  159 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSL---SLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHG  159 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhc---cccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhc
Confidence            356678899999999999888888888   777777776655 4579999999999842  2345555566655553332


Q ss_pred             ccHHHHHHcCchHHHHHHhc--CCCcccHHHHHHHHHHHhcCHh-HHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 014817          274 QTRYKAVAAGAAETLVDRLA--DFDKCDAERALATVELLCRIPA-GCAEFAEHALTVPLLVKTILKISDRATEYAAGALA  350 (418)
Q Consensus       274 ~n~~~i~~~G~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~  350 (418)
                      -.....+....|.....+..  ..+..+...|+..|.++..++. .+..+.++ --+..|+..+..++..++..|+..+.
T Consensus       160 vvsW~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~ee-v~i~~li~hlq~~n~~i~~~aial~n  238 (713)
T KOG2999|consen  160 VVSWESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEE-VPIETLIRHLQVSNQRIQTCAIALLN  238 (713)
T ss_pred             eeeeeecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhc-CcHHHHHHHHHhcchHHHHHHHHHHH
Confidence            22222233333344444443  2356788999999999996655 56666664 78899999999999999999988887


Q ss_pred             HHhc-CCHHHHHHHHhcC
Q 014817          351 ALCS-ASERCQRDAVSAG  367 (418)
Q Consensus       351 ~l~~-~~~~~~~~~~~~g  367 (418)
                      .+.. ..+..|.++.+.=
T Consensus       239 al~~~a~~~~R~~~~~~l  256 (713)
T KOG2999|consen  239 ALFRKAPDDKRFEMAKSL  256 (713)
T ss_pred             HHHhhCChHHHHHHHHHH
Confidence            7776 2333555555543

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=96.78  E-value=0.4  Score=51.01  Aligned_cols=246  Identities=19%  Similarity=0.121  Sum_probs=146.8

Q ss_pred             HhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhc----CCC----HHHHH
Q 014817          142 ISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLF----HSS----IEVRV  213 (418)
Q Consensus       142 i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~----~~~----~~~~~  213 (418)
                      +.+.||+..|++++.+-.+.+  ...+.....+.+|..++.-. .||+.+.+.|+++.|+..|.    .+.    .++-+
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~--~~~~ll~~llkLL~~c~Kv~-~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E  189 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFS--RGRELLQVLLKLLRYCCKVK-VNRRALLELNALNRLLSVLNRALQANQNSSQAEIAE  189 (802)
T ss_pred             hhcCCCHHHHHHHHHhhcccc--CcHHHHHHHHHHHHHHHhhH-HHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHH
Confidence            566899999999997643211  13556666677777766655 89999999999999999884    333    67777


Q ss_pred             HHHHHHHHHHhcccchhhhhHhh--c-------hhhhHHHHHHHhhcCC--CChhhhHHHHHHHHHHccccccHHHHHHc
Q 014817          214 NSAALIEIVLAGMRSQELRAQIS--N-------LDEIFEGVIDILKNLS--SYPRGLKVGIKALFALCLVKQTRYKAVAA  282 (418)
Q Consensus       214 ~a~~~L~~L~~~s~~~~~~~~i~--~-------~~g~i~~Lv~lL~~~~--~~~~~~~~a~~aL~~L~~~~~n~~~i~~~  282 (418)
                      ....++..|.+.+..++......  .       ...-+..|++.+.+..  .++.+....++.|-+|+..+..+...   
T Consensus       190 ~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~---  266 (802)
T PF13764_consen  190 QLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDA---  266 (802)
T ss_pred             HHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHH---
Confidence            77777777742122111111111  0       1123666777766541  25788999999999999887655443   


Q ss_pred             CchHHHHHHhc--CCC---cccHHHHHHHHHHHh----cC---HhHHHHHHhccCChHHHHHHHhcCCh--------HHH
Q 014817          283 GAAETLVDRLA--DFD---KCDAERALATVELLC----RI---PAGCAEFAEHALTVPLLVKTILKISD--------RAT  342 (418)
Q Consensus       283 G~v~~Lv~lL~--~~~---~~~~~~a~~~L~~L~----~~---~~~~~~i~~~~g~i~~Lv~~l~~~~~--------~~~  342 (418)
                       .|...-..|.  .-+   ..--..-+..+..++    .+   ..-|+.+++. |++...+++|...-+        ..+
T Consensus       267 -Lv~~F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~-GIv~~a~~YL~~~~P~~~~~~s~eWk  344 (802)
T PF13764_consen  267 -LVEHFKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILES-GIVQDAIDYLLKHFPSLKNTDSPEWK  344 (802)
T ss_pred             -HHHHHHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHh-hHHHHHHHHHHHhCcccccCCCHHHH
Confidence             1222223332  111   110112233333333    22   3567788885 999999999876322        222


Q ss_pred             --------HHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHH-hhCCCHHHHHHHHHHHHHHHh
Q 014817          343 --------EYAAGALAALCSASERCQRDAVSAGVLTQLLLLV-QSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       343 --------~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll-~~~~~~~~~~~A~~~L~~l~~  397 (418)
                              ..++..|.-||.+....+. ++..++++.| ..| +..++..+=..|-.+|..|+.
T Consensus       345 ~~l~~psLp~iL~lL~GLa~gh~~tQ~-~~~~~~l~~l-H~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  345 EFLSRPSLPYILRLLRGLARGHEPTQL-LIAEQLLPLL-HRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHhcCCcHHHHHHHHHHHHhcCHHHHH-HHHhhHHHHH-HHhhcCCCccchHHHHHHHHHHHhc
Confidence                    4678888888886655444 4667777554 444 333233344455555555554

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=96.78  E-value=0.0013  Score=58.56  Aligned_cols=45  Identities=33%  Similarity=0.501  Sum_probs=38.2

Q ss_pred             cccCcCccccccCCeec-CCCCcccHHHHHHHHHcC-CCCCCCCCCC
Q 014817           17 HFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATG-NTTCPVTRSP   61 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~-~~~cp~~~~~   61 (418)
                      .++||++......|++. .|||.|+|..|+.++... .-.||+-+..
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            36999999999999999 599999999999998642 3459997765

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.78  E-value=0.0029  Score=43.12  Aligned_cols=55  Identities=16%  Similarity=0.094  Sum_probs=44.0

Q ss_pred             hhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHH
Q 014817          167 PELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIV  222 (418)
Q Consensus       167 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L  222 (418)
                      +.++..|+.+|++++....+.- .-.....++.|+.+|++++.++|..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            3688999999999886653322 224567899999999999999999999999875

...

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.77  E-value=0.0014  Score=61.91  Aligned_cols=53  Identities=21%  Similarity=0.509  Sum_probs=43.2

Q ss_pred             CcCCCCCCCc------ccCcCccccccC---CeecCCCCcccHHHHHHHHHcCC--CCCCCCCC
Q 014817            8 LDLSVQIPYH------FRCPISLELMCD---PVTVCTGQTYDRPSIESWVATGN--TTCPVTRS   60 (418)
Q Consensus         8 ~~~~~~~~~~------~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~--~~cp~~~~   60 (418)
                      .+.+.+++.+      |.|||.++.-.|   |+.+.|||+.+|.+|.+....|.  ..||-|-.
T Consensus       319 LPveIeL~~~~~fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~  382 (394)
T KOG2817|consen  319 LPVEIELGKEYHFHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV  382 (394)
T ss_pred             CccceeccccccccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence            3444555554      699999998887   99999999999999999988776  67999943

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.76  E-value=0.39  Score=48.07  Aligned_cols=66  Identities=18%  Similarity=0.215  Sum_probs=44.2

Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHhc--CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          327 VPLLVKTILKISDRATEYAAGALAALCS--ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       327 i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      |..+.+.+.-.+..++..|+.+|...+-  .++-..+.     +...|-+.+... ++++|+.|+.+|+++...
T Consensus       489 vrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~~~~~s-----v~~~lkRclnD~-DdeVRdrAsf~l~~~~~~  556 (898)
T COG5240         489 VRHIYNRLILENNIVRSAAVQALSKFALNISDVVSPQS-----VENALKRCLNDQ-DDEVRDRASFLLRNMRLS  556 (898)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhccCccccccHHH-----HHHHHHHHhhcc-cHHHHHHHHHHHHhhhhh
Confidence            4444444444788899999999977665  23322222     334455555444 999999999999999854

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=96.75  E-value=0.11  Score=48.26  Aligned_cols=224  Identities=10%  Similarity=0.031  Sum_probs=153.0

Q ss_pred             hhHHHHHHHHHhcCCCChh----HHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhH
Q 014817          167 PELAHESLALLVMFPLTET----ECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIF  242 (418)
Q Consensus       167 ~~v~~~a~~~L~~l~~~~~----~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i  242 (418)
                      ..|.-.++.-+..+..+.+    ..-..++.+|.++.++..+...+.++...|...|..+   +..++.-..|..+ ..+
T Consensus        96 asVKiLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikri---alfpaaleaiFeS-ell  171 (524)
T KOG4413|consen   96 ASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRI---ALFPAALEAIFES-ELL  171 (524)
T ss_pred             chhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHH---HhcHHHHHHhccc-ccC
Confidence            4566666665544433332    2244556899999999999999999999999999999   8888888888763 344


Q ss_pred             HH--HHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcC-CCcccHHHHHHHHHHHhcCHhHHH
Q 014817          243 EG--VIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLAD-FDKCDAERALATVELLCRIPAGCA  318 (418)
Q Consensus       243 ~~--Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~  318 (418)
                      ..  ++++....  +.-++......+..+.+-.. .....-..|.+..|..-|.. .|.-+..+++.....|+....+++
T Consensus       172 Ddlhlrnlaakc--ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgre  249 (524)
T KOG4413|consen  172 DDLHLRNLAAKC--NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGRE  249 (524)
T ss_pred             ChHHHhHHHhhh--hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhh
Confidence            43  44444445  56778888888888876554 44555568998888888875 566677899999999999999999


Q ss_pred             HHHhccCChHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHhcC-------hHHHHHHHHhhCCCHHHHHHHH
Q 014817          319 EFAEHALTVPLLVKTILK--ISDRATEYAAGALAALCSASERCQRDAVSAG-------VLTQLLLLVQSDCTDRAKRKAQ  389 (418)
Q Consensus       319 ~i~~~~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g-------~i~~L~~ll~~~~~~~~~~~A~  389 (418)
                      .+.+. |.|..+-.++..  .++--+-.++.....+-.  .+....+.++.       ++..-.+.+..+ ++...+.|.
T Consensus       250 flaQe-glIdlicnIIsGadsdPfekfralmgfgkffg--keaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAi  325 (524)
T KOG4413|consen  250 FLAQE-GLIDLICNIISGADSDPFEKFRALMGFGKFFG--KEAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAI  325 (524)
T ss_pred             hcchh-hHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhc--chHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHH
Confidence            98885 999888888865  444444445544333332  11222222222       233334455556 888999999


Q ss_pred             HHHHHHHhhCC
Q 014817          390 LLLKLLRDSWP  400 (418)
Q Consensus       390 ~~L~~l~~~~~  400 (418)
                      .++..|..+-+
T Consensus       326 DalGilGSnte  336 (524)
T KOG4413|consen  326 DALGILGSNTE  336 (524)
T ss_pred             HHHHhccCCcc
Confidence            99888866543

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.73  E-value=0.00098  Score=58.44  Aligned_cols=37  Identities=27%  Similarity=0.436  Sum_probs=32.7

Q ss_pred             CCCCcccCcCccccccCCeecCCCCcccHHHHHHHHH
Q 014817           13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVA   49 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~   49 (418)
                      .|.+.=+|.+|+++++|||+.+-||.|||.||-+++-
T Consensus        39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il   75 (303)
T KOG3039|consen   39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL   75 (303)
T ss_pred             ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence            4555559999999999999999999999999999863

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.68  E-value=0.11  Score=46.38  Aligned_cols=150  Identities=13%  Similarity=0.094  Sum_probs=106.8

Q ss_pred             HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh-HHHhhcccCCchHHH
Q 014817          122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET-ECMEIASDADKITSL  200 (418)
Q Consensus       122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L  200 (418)
                      ..|+.-|.-+++ +++.|..|.++.+---|-.+|.......  ..+..+-.++.+++.|...++ +.-..+...++||..
T Consensus        97 cnaL~LlQcvAS-HpdTr~~FL~A~iPlylYpfL~Tt~~~r--~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlC  173 (293)
T KOG3036|consen   97 CNALALLQCVAS-HPDTRRAFLRAHIPLYLYPFLNTTSKSR--PFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLC  173 (293)
T ss_pred             HHHHHHHHHHhc-CcchHHHHHHccChhhhHHhhhccccCC--chHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHH
Confidence            456666666665 5788888998876666667775432111  146688899999998876543 445566689999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhch-------hhhHHHHHH-HhhcCCCChhhhHHHHHHHHHHccc
Q 014817          201 SSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNL-------DEIFEGVID-ILKNLSSYPRGLKVGIKALFALCLV  272 (418)
Q Consensus       201 v~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~-------~g~i~~Lv~-lL~~~~~~~~~~~~a~~aL~~L~~~  272 (418)
                      ++.+..|+...+..|+.++..+   -.+|..-..|...       .-.+..++. +.+.+  ++...+++.++..+|+.+
T Consensus       174 Lrime~GSelSKtvA~fIlqKI---lldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~p--s~RllKhviRcYlrLsdn  248 (293)
T KOG3036|consen  174 LRIMESGSELSKTVATFILQKI---LLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMP--SPRLLKHVIRCYLRLSDN  248 (293)
T ss_pred             HHHHhcccHHHHHHHHHHHHHH---hhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999   5666544444321       223333333 33344  789999999999999988


Q ss_pred             cccHHHH
Q 014817          273 KQTRYKA  279 (418)
Q Consensus       273 ~~n~~~i  279 (418)
                      ...|..+
T Consensus       249 prar~aL  255 (293)
T KOG3036|consen  249 PRARAAL  255 (293)
T ss_pred             HHHHHHH
Confidence            8766654

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.66  E-value=0.35  Score=43.74  Aligned_cols=201  Identities=19%  Similarity=0.189  Sum_probs=110.2

Q ss_pred             cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817          145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLA  224 (418)
Q Consensus       145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~  224 (418)
                      ..+++.|+..|...+.     .+-|+..|..+|..+. ..          +.++.+-+..+....++++.+..+|..+  
T Consensus        66 ~~Av~~l~~vl~desq-----~pmvRhEAaealga~~-~~----------~~~~~l~k~~~dp~~~v~ETc~lAi~rl--  127 (289)
T KOG0567|consen   66 EDAVPVLVEVLLDESQ-----EPMVRHEAAEALGAIG-DP----------ESLEILTKYIKDPCKEVRETCELAIKRL--  127 (289)
T ss_pred             chhhHHHHHHhccccc-----chHHHHHHHHHHHhhc-ch----------hhHHHHHHHhcCCccccchHHHHHHHHH--
Confidence            4588888888876542     5678888888888765 22          3455566666566667777666666666  


Q ss_pred             cccchhhhhH-------hhc------hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHH
Q 014817          225 GMRSQELRAQ-------ISN------LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDR  291 (418)
Q Consensus       225 ~s~~~~~~~~-------i~~------~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~l  291 (418)
                       ..-+. -..       +..      ..+-+..|-..|.+.+ .+...+.  ++++.|-....       ..+|-.|++-
T Consensus       128 -e~~~~-~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t-~~l~~Ry--~amF~LRn~g~-------EeaI~al~~~  195 (289)
T KOG0567|consen  128 -EWKDI-IDKIANSSPYISVDPAPPANLSSVHELRAELLDET-KPLFERY--RAMFYLRNIGT-------EEAINALIDG  195 (289)
T ss_pred             -HHhhc-cccccccCccccCCCCCccccccHHHHHHHHHhcc-hhHHHHH--hhhhHhhccCc-------HHHHHHHHHh
Confidence             11110 000       000      0111222333222221 1111111  22222211100       0123334444


Q ss_pred             hcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc--CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChH
Q 014817          292 LADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK--ISDRATEYAAGALAALCSASERCQRDAVSAGVL  369 (418)
Q Consensus       292 L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i  369 (418)
                      +..++.-.+-.+..++..|-.           .-.|+.|.+.|..  .++-++-.|+.+|..|+.  ++         .+
T Consensus       196 l~~~SalfrhEvAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~--e~---------~~  253 (289)
T KOG0567|consen  196 LADDSALFRHEVAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAIAD--ED---------CV  253 (289)
T ss_pred             cccchHHHHHHHHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC--HH---------HH
Confidence            444344445556656655432           3568899998876  788899999999999886  33         34


Q ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          370 TQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       370 ~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +.|..++... .+-+++.+...|.++.-.
T Consensus       254 ~vL~e~~~D~-~~vv~esc~valdm~eye  281 (289)
T KOG0567|consen  254 EVLKEYLGDE-ERVVRESCEVALDMLEYE  281 (289)
T ss_pred             HHHHHHcCCc-HHHHHHHHHHHHHHHHHh
Confidence            5566666555 777888888888776543

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.6  Score=47.96  Aligned_cols=182  Identities=13%  Similarity=0.095  Sum_probs=123.6

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      .+++|++.|..+++.++  -.|+..+.+|++.+|.|-..+.     |.+..+|.+..      |-=+.-..+...+.|+-
T Consensus       182 ~FprL~EkLeDpDp~V~--SAAV~VICELArKnPknyL~LA-----P~ffkllttSs------NNWmLIKiiKLF~aLtp  248 (877)
T KOG1059|consen  182 CFPRLVEKLEDPDPSVV--SAAVSVICELARKNPQNYLQLA-----PLFYKLLVTSS------NNWVLIKLLKLFAALTP  248 (877)
T ss_pred             hHHHHHHhccCCCchHH--HHHHHHHHHHHhhCCccccccc-----HHHHHHHhccC------CCeehHHHHHHHhhccc
Confidence            46789999988766544  7899999999999998875544     88888987664      23355666677777764


Q ss_pred             ChhHHHhhcccCCchHHHHHHhcCCC-HHHHHHHHHHHH--HHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817          183 TETECMEIASDADKITSLSSLLFHSS-IEVRVNSAALIE--IVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~-~~~~~~a~~~L~--~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      -.+..+..     .+++|..++.+.. ..+...++.++.  +++  +...+.-..+   .-++..|-.++.+.  ++..+
T Consensus       249 lEPRLgKK-----Lieplt~li~sT~AmSLlYECvNTVVa~s~s--~g~~d~~asi---qLCvqKLr~fieds--DqNLK  316 (877)
T KOG1059|consen  249 LEPRLGKK-----LIEPITELMESTVAMSLLYECVNTVVAVSMS--SGMSDHSASI---QLCVQKLRIFIEDS--DQNLK  316 (877)
T ss_pred             cCchhhhh-----hhhHHHHHHHhhHHHHHHHHHHHHheeehhc--cCCCCcHHHH---HHHHHHHhhhhhcC--CccHH
Confidence            33333333     4799999998765 233333333222  442  2322333333   22678888888888  89999


Q ss_pred             HHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC
Q 014817          260 KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI  313 (418)
Q Consensus       260 ~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  313 (418)
                      --++-|++.+...+.--.+.    --+.++++|.+.|..++-.|+.+|..+...
T Consensus       317 YlgLlam~KI~ktHp~~Vqa----~kdlIlrcL~DkD~SIRlrALdLl~gmVsk  366 (877)
T KOG1059|consen  317 YLGLLAMSKILKTHPKAVQA----HKDLILRCLDDKDESIRLRALDLLYGMVSK  366 (877)
T ss_pred             HHHHHHHHHHhhhCHHHHHH----hHHHHHHHhccCCchhHHHHHHHHHHHhhh
Confidence            99999999998654321111    234578899999999999999999988853

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.65  E-value=0.064  Score=56.88  Aligned_cols=236  Identities=14%  Similarity=0.082  Sum_probs=156.5

Q ss_pred             HHHHHHHhhcccccccCCChhHHHHHHHHHhcCC-CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 014817          148 RAILSQVFFTNINVKTASSPELAHESLALLVMFP-LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGM  226 (418)
Q Consensus       148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~-~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s  226 (418)
                      +|.++++|-+..         =+..|+..|+.+. .+. =.-..-..-|+.|-++++|++...+.|-..+.+=..+.  +
T Consensus       474 LPiVLQVLLSQv---------HRlRAL~LL~RFLDlGp-WAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKIL--A  541 (1387)
T KOG1517|consen  474 LPIVLQVLLSQV---------HRLRALVLLARFLDLGP-WAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKIL--A  541 (1387)
T ss_pred             cchHHHHHHHHH---------HHHHHHHHHHHHhccch-hhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHH--h
Confidence            455566664431         1445666665443 111 11222336799999999999999999988777777774  5


Q ss_pred             cchhhhhHhhchhhhHHHHHHHhhc-CCCChhhhHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCC-CcccHHHH
Q 014817          227 RSQELRAQISNLDEIFEGVIDILKN-LSSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLADF-DKCDAERA  303 (418)
Q Consensus       227 ~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~-~~~~~~~a  303 (418)
                      .++.....+.. .++-.-.+..|.. ...+++-+..|+-.|..++.+ ...+....+.+.+..-++.|.++ .+-++..+
T Consensus       542 vD~SCQ~dLvK-e~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~  620 (1387)
T KOG1517|consen  542 VDPSCQADLVK-ENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWL  620 (1387)
T ss_pred             cCchhHHHHHh-ccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHH
Confidence            66555555655 3445555666665 322557888899999999876 45777778899999999999875 45566777


Q ss_pred             HHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcC----CHHHHHH-----------HHhcCh
Q 014817          304 LATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSA----SERCQRD-----------AVSAGV  368 (418)
Q Consensus       304 ~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~----~~~~~~~-----------~~~~g~  368 (418)
                      +-.|..|=.+-+..+......++...|+.+|+...++++..|+-+|..+-..    .++....           +.-+..
T Consensus       621 ~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~  700 (1387)
T KOG1517|consen  621 CICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDL  700 (1387)
T ss_pred             HHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHH
Confidence            8788877765444444433359999999999999999999999999887662    2222211           112222


Q ss_pred             HH----HHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          369 LT----QLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       369 i~----~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      +.    .++.+++.+ ++-++...+-.|..+..
T Consensus       701 i~~~~~~ll~~vsdg-splvr~ev~v~ls~~~~  732 (1387)
T KOG1517|consen  701 IIKGLMSLLALVSDG-SPLVRTEVVVALSHFVV  732 (1387)
T ss_pred             HHhhHHHHHHHHhcc-chHHHHHHHHHHHHHHH
Confidence            33    455556444 88888777777766655

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.62  E-value=0.13  Score=54.26  Aligned_cols=272  Identities=13%  Similarity=0.072  Sum_probs=148.2

Q ss_pred             HHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh
Q 014817          106 TLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET  185 (418)
Q Consensus       106 ~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~  185 (418)
                      .|++.+.+++.|  .|.-|...|..-...+.-+-+.=-+...+..|+++|.+.       +.+||..|+.+|+-|+..-.
T Consensus         9 ~LlekmtssDKD--fRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~-------ngEVQnlAVKClg~lvsKvk   79 (1233)
T KOG1824|consen    9 NLLEKMTSSDKD--FRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDK-------NGEVQNLAVKCLGPLVSKVK   79 (1233)
T ss_pred             HHHHHccCCCcc--hhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhcc-------CcHHHHHHHHHHHHHHhhch
Confidence            788999888544  577788777754322211111111235788899999877       68999999999998873321


Q ss_pred             HHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC----CCChhhhHH
Q 014817          186 ECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL----SSYPRGLKV  261 (418)
Q Consensus       186 ~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~~  261 (418)
                      +.+  +  ...+..|..-+-++....|.-+.-.|....  +.-......... ..+.+.+...+...    .....++-.
T Consensus        80 e~~--l--e~~ve~L~~~~~s~keq~rdissi~Lktvi--~nl~P~~~~~la-~tV~~~~t~~l~~~i~~qe~~sai~~e  152 (1233)
T KOG1824|consen   80 EDQ--L--ETIVENLCSNMLSGKEQLRDISSIGLKTVI--ANLPPSSSSFLA-ATVCKRITPKLKQAISKQEDVSAIKCE  152 (1233)
T ss_pred             HHH--H--HHHHHHHhhhhccchhhhccHHHHHHHHHH--hcCCCccccccc-cHHHHHHHHHHHHHhhhcccchhhHHH
Confidence            111  1  012344444444555555554444333332  222211111111 22344444333322    102234555


Q ss_pred             HHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CCh
Q 014817          262 GIKALFALCLV-KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISD  339 (418)
Q Consensus       262 a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~  339 (418)
                      ++..|..+-+. .+--.. ...+.+..++.-|.+...-++..++.+|..|+..-. +....   +.+..|++-|.. .+.
T Consensus       153 ~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~-~~ly~---~li~~Ll~~L~~~~q~  227 (1233)
T KOG1824|consen  153 VLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCN-RDLYV---ELIEHLLKGLSNRTQM  227 (1233)
T ss_pred             HHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcC-HHHHH---HHHHHHHhccCCCCch
Confidence            55555544322 111111 345666777777777777888999999999985221 12221   234455555544 344


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHH---hhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          340 RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLV---QSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       340 ~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll---~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ....--+.+|..+|+... .|.--.-..+++.+.++.   +.+ +++.|+....++..+-..-+
T Consensus       228 ~~~rt~Iq~l~~i~r~ag-~r~~~h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~rcp  289 (1233)
T KOG1824|consen  228 SATRTYIQCLAAICRQAG-HRFGSHLDKIVPLVADYCNKIEED-DDELREYCLQALESFLRRCP  289 (1233)
T ss_pred             HHHHHHHHHHHHHHHHhc-chhhcccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHHhCh
Confidence            444555666677776111 111111245778888887   455 89999999999988877644

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.58  E-value=0.26  Score=47.89  Aligned_cols=280  Identities=20%  Similarity=0.142  Sum_probs=153.1

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      ++|..+++.|.++++ ...|..++-.|...+. ++.-|.+++..|.+..+++.+....+     +....-.++.+++.++
T Consensus        21 Dev~ylld~l~~~~~-~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~-----d~~~~l~~a~i~~~l~   93 (361)
T PF07814_consen   21 DEVEYLLDGLESSSS-SSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPD-----DDILALATAAILYVLS   93 (361)
T ss_pred             HHHHHHHhhcccCCC-ccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccc-----hHHHHHHHHHHHHHHc
Confidence            578999999985443 3346778888887775 57889999999999999999955431     2323333444555555


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCH-HHHHHH-HHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc------C-
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSI-EVRVNS-AALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN------L-  252 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~-~~~~~a-~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~------~-  252 (418)
                      .+. ..-..+.+.+.+..+++++..... ...... ..-=.++   +       .+.  .+.+..+..++..      . 
T Consensus        94 ~d~-~~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~l---s-------k~~--~~~~~~~~~~~~~~~~~~~~~  160 (361)
T PF07814_consen   94 RDG-LNMHLLLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNL---S-------KVQ--QKSRSLCKELLSSGSSWKSPK  160 (361)
T ss_pred             cCC-cchhhhhchhHHHHHHHHhccccccccccchhhhhhhhh---h-------HHH--HHHHHHHHHHHhccccccccC
Confidence            544 344444566777777888771100 000000 0000011   0       000  1111112222211      0 


Q ss_pred             CCChhhhHHHHHHHHHHcc---------------ccccHHHHHHcCchHHHHHHhcC----C-------C-----cccHH
Q 014817          253 SSYPRGLKVGIKALFALCL---------------VKQTRYKAVAAGAAETLVDRLAD----F-------D-----KCDAE  301 (418)
Q Consensus       253 ~~~~~~~~~a~~aL~~L~~---------------~~~n~~~i~~~G~v~~Lv~lL~~----~-------~-----~~~~~  301 (418)
                      ......+.-|+.+|-.++.               .+..+..+.+.|++..+++++.+    .       +     -...+
T Consensus       161 ~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~  240 (361)
T PF07814_consen  161 PPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLE  240 (361)
T ss_pred             CcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHH
Confidence            0023345556666665530               12246777788999999999852    1       1     12345


Q ss_pred             HHHHHHHHHhc-CHhHHHHHHhcc-CChHHHHHHHhc----CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHH
Q 014817          302 RALATVELLCR-IPAGCAEFAEHA-LTVPLLVKTILK----ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLL  375 (418)
Q Consensus       302 ~a~~~L~~L~~-~~~~~~~i~~~~-g~i~~Lv~~l~~----~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~l  375 (418)
                      .++.+|.+-+. +.++........ +.++.+...+..    ........+++++.|++..+++...+....++...+..+
T Consensus       241 ~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~~~c~~~~s~~l~~~~~~i  320 (361)
T PF07814_consen  241 RCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNPSACEEFASPKLGQQLGLI  320 (361)
T ss_pred             HHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCccchHhhhhhHhccchHHH
Confidence            68888888773 344555444432 233333333322    233346789999999999887776666665554444322


Q ss_pred             Hhh-------C------CCHHHHHHHHHHHHHHHhhCCC
Q 014817          376 VQS-------D------CTDRAKRKAQLLLKLLRDSWPQ  401 (418)
Q Consensus       376 l~~-------~------~~~~~~~~A~~~L~~l~~~~~~  401 (418)
                      ...       +      ..-...--+..+|=||.++.+.
T Consensus       321 ~~~~~~~~~~~~~~~~~~~~D~~IL~Lg~LINL~E~s~~  359 (361)
T PF07814_consen  321 VTSFFCVLSLPNYVPEESSFDILILALGLLINLVEHSEA  359 (361)
T ss_pred             HHhhcccccccccccccccchHHHHHHHhHHHheeeCcc
Confidence            221       0      0122334577778888877654

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.52  E-value=0.74  Score=47.89  Aligned_cols=104  Identities=15%  Similarity=0.112  Sum_probs=55.2

Q ss_pred             hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHH
Q 014817          285 AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAV  364 (418)
Q Consensus       285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~  364 (418)
                      +..|-+.|.+.+.+++--++..|..+...+....+  .|   =..++++|+..+..++..|+..++.|.. +...+.   
T Consensus       315 iniLgkFL~n~d~NirYvaLn~L~r~V~~d~~avq--rH---r~tIleCL~DpD~SIkrralELs~~lvn-~~Nv~~---  385 (866)
T KOG1062|consen  315 INILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQ--RH---RSTILECLKDPDVSIKRRALELSYALVN-ESNVRV---  385 (866)
T ss_pred             HHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHH--HH---HHHHHHHhcCCcHHHHHHHHHHHHHHhc-cccHHH---
Confidence            34444555555556665666666555543332111  11   1356667777777777888777777776 222233   


Q ss_pred             hcChHHHHHHHHhhCCCHHHHHH-HHHHHHHHHhhCCC
Q 014817          365 SAGVLTQLLLLVQSDCTDRAKRK-AQLLLKLLRDSWPQ  401 (418)
Q Consensus       365 ~~g~i~~L~~ll~~~~~~~~~~~-A~~~L~~l~~~~~~  401 (418)
                         .+..|+.+|.+. ++..|.. |.++...-.++...
T Consensus       386 ---mv~eLl~fL~~~-d~~~k~~~as~I~~laEkfaP~  419 (866)
T KOG1062|consen  386 ---MVKELLEFLESS-DEDFKADIASKIAELAEKFAPD  419 (866)
T ss_pred             ---HHHHHHHHHHhc-cHHHHHHHHHHHHHHHHhcCCc
Confidence               345666777655 5555544 33333333334443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.51  E-value=0.032  Score=55.86  Aligned_cols=150  Identities=16%  Similarity=0.173  Sum_probs=107.2

Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc
Q 014817          196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT  275 (418)
Q Consensus       196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n  275 (418)
                      .+..++.+|++.++.+|+.|+.+...|   ...-.++.....-...=..|.+-|...  .+++....+.|+..+.+....
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl---~~vlk~c~e~~~l~klg~iLyE~lge~--ypEvLgsil~Ai~~I~sv~~~  679 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSL---AKVLKACGETKELAKLGNILYENLGED--YPEVLGSILKAICSIYSVHRF  679 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHH---HHHHHhcchHHHHHHHhHHHHHhcCcc--cHHHHHHHHHHHHHHhhhhcc
Confidence            466677889999999999999999988   333332222211011112355555555  899999999999988766543


Q ss_pred             HH-HHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH----hHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 014817          276 RY-KAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP----AGCAEFAEHALTVPLLVKTILKISDRATEYAAGALA  350 (418)
Q Consensus       276 ~~-~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~----~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~  350 (418)
                      +. +-=-.|.+|.|..+|.+.+..++++...++..++...    ..|+.+...    .-|+..|++.+..++.+|...+.
T Consensus       680 ~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc----feLvd~Lks~nKeiRR~A~~tfG  755 (975)
T COG5181         680 RSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRIC----FELVDSLKSWNKEIRRNATETFG  755 (975)
T ss_pred             cccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHhhHHHHHhhhhhhh
Confidence            31 1123689999999999988999999999999988533    356666553    45777888889999999998888


Q ss_pred             HHhc
Q 014817          351 ALCS  354 (418)
Q Consensus       351 ~l~~  354 (418)
                      .|+.
T Consensus       756 ~Is~  759 (975)
T COG5181         756 CISR  759 (975)
T ss_pred             hHHh
Confidence            8776

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.50  E-value=0.0024  Score=56.27  Aligned_cols=51  Identities=18%  Similarity=0.357  Sum_probs=42.5

Q ss_pred             CCcccCcCccccccCCe----ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCc
Q 014817           15 PYHFRCPISLELMCDPV----TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLI   68 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~   68 (418)
                      ...|.|||++-.|.+-.    +.+|||+|.-+++.+..   ..+|++|+..+...+++
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvI  163 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVI  163 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeE
Confidence            44699999999998876    55899999999988864   56799999999876653

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.47  E-value=0.21  Score=44.64  Aligned_cols=181  Identities=16%  Similarity=0.068  Sum_probs=120.1

Q ss_pred             HHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCC---CChhhhHHHHHHHHHHccccc--cHHHHHHcCc
Q 014817          210 EVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLS---SYPRGLKVGIKALFALCLVKQ--TRYKAVAAGA  284 (418)
Q Consensus       210 ~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~~a~~aL~~L~~~~~--n~~~i~~~G~  284 (418)
                      .-..++...|.-+   +.+.+.|..+.. ..+---|-..|...+   ..+-.+-.++++|..|..+++  -...+...++
T Consensus        94 nRVcnaL~LlQcv---ASHpdTr~~FL~-A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeI  169 (293)
T KOG3036|consen   94 NRVCNALALLQCV---ASHPDTRRAFLR-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEI  169 (293)
T ss_pred             chHHHHHHHHHHH---hcCcchHHHHHH-ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence            3345667777777   788888888854 322223444444331   134578899999999998765  3455578999


Q ss_pred             hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccC-------ChHHHHHHHh-cCChHHHHHHHHHHHHHhcCC
Q 014817          285 AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHAL-------TVPLLVKTIL-KISDRATEYAAGALAALCSAS  356 (418)
Q Consensus       285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g-------~i~~Lv~~l~-~~~~~~~~~A~~~L~~l~~~~  356 (418)
                      ||..++.+..|+...+.-|..++..+-.++.|-..+.....       .+..+|..+. .++.++-.+++++..+|+. +
T Consensus       170 VPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsd-n  248 (293)
T KOG3036|consen  170 VPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSD-N  248 (293)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC-C
Confidence            99999999999888888899999988888887776655321       2223333333 3899999999999999998 7


Q ss_pred             HHHHHHHHhcChHHHH----HHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          357 ERCQRDAVSAGVLTQL----LLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       357 ~~~~~~~~~~g~i~~L----~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      ++.|...... .-..|    ...+-.+ ++..|+--..++.++..
T Consensus       249 prar~aL~~c-lPd~Lrd~tfs~~l~~-D~~~k~~l~~ll~~l~~  291 (293)
T KOG3036|consen  249 PRARAALRSC-LPDQLRDGTFSLLLKD-DPETKQWLQQLLKNLCT  291 (293)
T ss_pred             HHHHHHHHhh-CcchhccchHHHHHhc-ChhHHHHHHHHHHHhcc
Confidence            7777654331 11111    1111133 56666666666666653

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.44  E-value=0.26  Score=52.05  Aligned_cols=226  Identities=12%  Similarity=0.070  Sum_probs=136.6

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      .+.+++..++++..+...+.-|+-.+.++-..    +......+.-..+++-++++       ++++...|..+|++++.
T Consensus       818 ~a~kl~~~~~s~~s~~~ikvfa~LslGElgr~----~~~s~~~e~~~~iieaf~sp-------~edvksAAs~ALGsl~v  886 (1233)
T KOG1824|consen  818 LATKLIQDLQSPKSSDSIKVFALLSLGELGRR----KDLSPQNELKDTIIEAFNSP-------SEDVKSAASYALGSLAV  886 (1233)
T ss_pred             HHHHHHHHHhCCCCchhHHHHHHhhhhhhccC----CCCCcchhhHHHHHHHcCCC-------hHHHHHHHHHHhhhhhc
Confidence            35667777766544433455566666655432    12222344555677888777       67899999999999987


Q ss_pred             ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817          183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG  262 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a  262 (418)
                      ++-        ...+|.++..+.+.. .-+..-.-.|......+..+..+..+   ..+...|.+-.+..  ....+...
T Consensus       887 gnl--------~~yLpfil~qi~sqp-k~QyLLLhSlkevi~~~svd~~~~~v---~~IW~lL~k~cE~~--eegtR~vv  952 (1233)
T KOG1824|consen  887 GNL--------PKYLPFILEQIESQP-KRQYLLLHSLKEVIVSASVDGLKPYV---EKIWALLFKHCECA--EEGTRNVV  952 (1233)
T ss_pred             Cch--------HhHHHHHHHHHhcch-HhHHHHHHHHHHHHHHhccchhhhhH---HHHHHHHHHhcccc--hhhhHHHH
Confidence            652        356788888776553 22232233333332112222111111   12333333333333  45567778


Q ss_pred             HHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHH
Q 014817          263 IKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRAT  342 (418)
Q Consensus       263 ~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~  342 (418)
                      +.+|..|+..+..       -.+|.|-..+.++....+..++.+...........-..... ..+..++.++++++..++
T Consensus       953 AECLGkL~l~epe-------sLlpkL~~~~~S~a~~~rs~vvsavKfsisd~p~~id~~lk-~~ig~fl~~~~dpDl~Vr 1024 (1233)
T KOG1824|consen  953 AECLGKLVLIEPE-------SLLPKLKLLLRSEASNTRSSVVSAVKFSISDQPQPIDPLLK-QQIGDFLKLLRDPDLEVR 1024 (1233)
T ss_pred             HHHhhhHHhCChH-------HHHHHHHHHhcCCCcchhhhhhheeeeeecCCCCccCHHHH-HHHHHHHHHHhCCchhHH
Confidence            8899888766543       25677788888888888888887776544333222222222 457788899999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHH
Q 014817          343 EYAAGALAALCSASERCQR  361 (418)
Q Consensus       343 ~~A~~~L~~l~~~~~~~~~  361 (418)
                      +.|+.++...+++.|....
T Consensus      1025 rvaLvv~nSaahNKpslIr 1043 (1233)
T KOG1824|consen 1025 RVALVVLNSAAHNKPSLIR 1043 (1233)
T ss_pred             HHHHHHHHHHHccCHhHHH
Confidence            9999999988886555444

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.42  E-value=0.033  Score=56.22  Aligned_cols=184  Identities=18%  Similarity=0.107  Sum_probs=113.4

Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHHhcc--c--chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817          196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGM--R--SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL  271 (418)
Q Consensus       196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s--~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~  271 (418)
                      .....+++|+....++|..|+.+++......  .  .+.+.....  ..++..+.+.+++.  +..++..|+.+|..+-.
T Consensus       235 ~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~--D~aF~~vC~~v~D~--sl~VRV~AaK~lG~~~~  310 (823)
T KOG2259|consen  235 CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK--DAAFSSVCRAVRDR--SLSVRVEAAKALGEFEQ  310 (823)
T ss_pred             HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH--HHHHHHHHHHHhcC--ceeeeehHHHHhchHHH
Confidence            3677889999999999998877776662112  0  011112221  34677778888877  66677677666655421


Q ss_pred             cc---------------------------------------------------ccHHHHHHcCchHHHHHHhcCCCcccH
Q 014817          272 VK---------------------------------------------------QTRYKAVAAGAAETLVDRLADFDKCDA  300 (418)
Q Consensus       272 ~~---------------------------------------------------~n~~~i~~~G~v~~Lv~lL~~~~~~~~  300 (418)
                      ..                                                   +.-..++..|+-.++|.-|.+.--+++
T Consensus       311 vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR  390 (823)
T KOG2259|consen  311 VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVR  390 (823)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHH
Confidence            11                                                   112234445555666666655445778


Q ss_pred             HHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCC
Q 014817          301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDC  380 (418)
Q Consensus       301 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~  380 (418)
                      ..|+..+..|+.+..+..   .  .++.-||.++..+-..++..|+.+|..|+..      ..+++.-++.++.-|... 
T Consensus       391 ~AAV~Sl~~La~ssP~FA---~--~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~------l~i~eeql~~il~~L~D~-  458 (823)
T KOG2259|consen  391 RAAVASLCSLATSSPGFA---V--RALDFLVDMFNDEIEVVRLKAIFALTMISVH------LAIREEQLRQILESLEDR-  458 (823)
T ss_pred             HHHHHHHHHHHcCCCCcH---H--HHHHHHHHHhccHHHHHHHHHHHHHHHHHHH------heecHHHHHHHHHHHHhc-
Confidence            888888888886433211   1  2356788877778889999999999999873      223334455555666444 


Q ss_pred             CHHHHHHHHHHHHHH
Q 014817          381 TDRAKRKAQLLLKLL  395 (418)
Q Consensus       381 ~~~~~~~A~~~L~~l  395 (418)
                      +..+|+....+|.+.
T Consensus       459 s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  459 SVDVREALRELLKNA  473 (823)
T ss_pred             CHHHHHHHHHHHHhc
Confidence            666666665555443

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.37  E-value=0.0031  Score=57.17  Aligned_cols=47  Identities=17%  Similarity=0.482  Sum_probs=37.8

Q ss_pred             ccCcCcccccc--CC-eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817           18 FRCPISLELMC--DP-VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus        18 ~~Cpi~~~~~~--dP-v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      .-|-||+.=+.  |- +++||.|.|-+.|+++|+..-...||+|+.++++
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            37999987663  22 3679999999999999998656779999988764

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.29  E-value=0.0022  Score=60.56  Aligned_cols=59  Identities=24%  Similarity=0.497  Sum_probs=46.4

Q ss_pred             ccCcCccccccCCe-----ecCCCCcccHHHHHHHHHcC-CCCCCCCCCCCCCCCCcccHHHHHH
Q 014817           18 FRCPISLELMCDPV-----TVCTGQTYDRPSIESWVATG-NTTCPVTRSPLTDFTLIPNHTLRRL   76 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv-----~~~~g~~~~r~~i~~~~~~~-~~~cp~~~~~l~~~~l~~n~~L~~~   76 (418)
                      -+||||++-+.-|+     .+.|||-|--.||++|+-+. ...||.|...-...++.+..+++..
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q   69 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ   69 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence            37999999999997     55799999999999999532 3459999876666667776666554

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=96.26  E-value=0.038  Score=56.52  Aligned_cols=147  Identities=14%  Similarity=0.048  Sum_probs=108.0

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhH--hhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc
Q 014817          197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQ--ISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ  274 (418)
Q Consensus       197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~--i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~  274 (418)
                      +..+++.|++.++.+|+.|+.++..+   +..-..+..  +....|  -.|.+-|...  .+++....+.||..+.....
T Consensus       801 ~stiL~rLnnksa~vRqqaadlis~l---a~Vlktc~ee~~m~~lG--vvLyEylgee--ypEvLgsILgAikaI~nvig  873 (1172)
T KOG0213|consen  801 CSTILWRLNNKSAKVRQQAADLISSL---AKVLKTCGEEKLMGHLG--VVLYEYLGEE--YPEVLGSILGAIKAIVNVIG  873 (1172)
T ss_pred             HHHHHHHhcCCChhHHHHHHHHHHHH---HHHHHhccHHHHHHHhh--HHHHHhcCcc--cHHHHHHHHHHHHHHHHhcc
Confidence            45556788999999999999999999   444444422  212234  2466777776  89999999999988876543


Q ss_pred             cHHHH-HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH----hHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHH
Q 014817          275 TRYKA-VAAGAAETLVDRLADFDKCDAERALATVELLCRIP----AGCAEFAEHALTVPLLVKTILKISDRATEYAAGAL  349 (418)
Q Consensus       275 n~~~i-~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~----~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L  349 (418)
                      -.+.. =-.|.+|.|..+|.+.+..+++++..++..++...    ..|+.+...    .-|+++|++.+..++..|...+
T Consensus       874 m~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMRIc----feLlelLkahkK~iRRaa~nTf  949 (1172)
T KOG0213|consen  874 MTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC----FELLELLKAHKKEIRRAAVNTF  949 (1172)
T ss_pred             ccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Confidence            21111 12578999999999999999999999999999532    356666553    4577888888888999998888


Q ss_pred             HHHhc
Q 014817          350 AALCS  354 (418)
Q Consensus       350 ~~l~~  354 (418)
                      ..|++
T Consensus       950 G~Iak  954 (1172)
T KOG0213|consen  950 GYIAK  954 (1172)
T ss_pred             hHHHH
Confidence            88776

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.23  E-value=0.072  Score=46.58  Aligned_cols=121  Identities=17%  Similarity=0.113  Sum_probs=86.9

Q ss_pred             hhhhHHHHHHHHHHccccccHHHHHH----------------cCchHHHHHHhcC------CCcccHHHHHHHHHHHhcC
Q 014817          256 PRGLKVGIKALFALCLVKQTRYKAVA----------------AGAAETLVDRLAD------FDKCDAERALATVELLCRI  313 (418)
Q Consensus       256 ~~~~~~a~~aL~~L~~~~~n~~~i~~----------------~G~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~  313 (418)
                      ......++..|.||+..++.+..++.                ..++..|++++..      +...-....+.+|.|++..
T Consensus         9 ~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~   88 (192)
T PF04063_consen    9 SPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQL   88 (192)
T ss_pred             cchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCC
Confidence            44666788889999888877765543                2367778887765      1234457789999999999


Q ss_pred             HhHHHHHHhccC-C--hHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHh---cChHHHHHHHHh
Q 014817          314 PAGCAEFAEHAL-T--VPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVS---AGVLTQLLLLVQ  377 (418)
Q Consensus       314 ~~~~~~i~~~~g-~--i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~---~g~i~~L~~ll~  377 (418)
                      +++|+.+..... .  +..|+..+.+.|..-+.-++++|.|+|...... ..+..   .++++.|+.-|.
T Consensus        89 ~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H-~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   89 PEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSH-EWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHH-HHhcCchhhhhHHHHHhhcc
Confidence            999999987532 3  556666666678888899999999999844444 33443   367777766664

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.23  E-value=0.41  Score=51.75  Aligned_cols=219  Identities=16%  Similarity=0.125  Sum_probs=133.3

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhccc--CCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHH
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASD--ADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFE  243 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~  243 (418)
                      +..+|..+-.+|..+.... .......+  ......|..-+++.+..++...+.+|..|.. ....+....+.   ..|+
T Consensus       667 ~~~vQkK~yrlL~~l~~~~-s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~-~~~~e~~~~i~---k~I~  741 (1176)
T KOG1248|consen  667 STKVQKKAYRLLEELSSSP-SGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLK-LLSAEHCDLIP---KLIP  741 (1176)
T ss_pred             cHHHHHHHHHHHHHHhcCC-chhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH-hccHHHHHHHH---HHHH
Confidence            5788999999999887663 22222221  2334555566666667777777777777742 12235555553   2455


Q ss_pred             HHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcC------chHHHHHHhcCC--CcccHHHH--HHHHHHHhcC
Q 014817          244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAG------AAETLVDRLADF--DKCDAERA--LATVELLCRI  313 (418)
Q Consensus       244 ~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G------~v~~Lv~lL~~~--~~~~~~~a--~~~L~~L~~~  313 (418)
                      .++-.++..  +...++.|..+|..+..    .....+.|      .|...+..+..+  .......+  +-++..+...
T Consensus       742 EvIL~~Ke~--n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e  815 (1176)
T KOG1248|consen  742 EVILSLKEV--NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE  815 (1176)
T ss_pred             HHHHhcccc--cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence            544444665  88999999999999973    12222222      555666666543  12222222  3333333321


Q ss_pred             H-hH-HHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHH
Q 014817          314 P-AG-CAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLL  391 (418)
Q Consensus       314 ~-~~-~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~  391 (418)
                      . .. -...+.  +.+..+...|...++.+...|++.+..++..-|+....-...-+++.++.+++.+ +...|.+...+
T Consensus       816 ~~~~ld~~~l~--~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr~L  892 (1176)
T KOG1248|consen  816 FKNILDDETLE--KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDH-KIKVRKKVRLL  892 (1176)
T ss_pred             HhccccHHHHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHHHH
Confidence            1 11 011111  3445555666678999999999999998886666555444555788888877666 88888888888


Q ss_pred             HHHHHhh
Q 014817          392 LKLLRDS  398 (418)
Q Consensus       392 L~~l~~~  398 (418)
                      |..|.+.
T Consensus       893 lekLirk  899 (1176)
T KOG1248|consen  893 LEKLIRK  899 (1176)
T ss_pred             HHHHHHH
Confidence            8887764

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.15  E-value=0.21  Score=50.34  Aligned_cols=260  Identities=13%  Similarity=0.073  Sum_probs=144.3

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcCh--hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSD--KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF  180 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~--~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l  180 (418)
                      -|..++..|++..++.  +.+|++....+++--.  .--+.+...|.|  |.+-|...       .+++.-..+.+++.+
T Consensus       605 ivStiL~~L~~k~p~v--R~~aadl~~sl~~vlk~c~e~~~l~klg~i--LyE~lge~-------ypEvLgsil~Ai~~I  673 (975)
T COG5181         605 IVSTILKLLRSKPPDV--RIRAADLMGSLAKVLKACGETKELAKLGNI--LYENLGED-------YPEVLGSILKAICSI  673 (975)
T ss_pred             HHHHHHHHhcCCCccH--HHHHHHHHHHHHHHHHhcchHHHHHHHhHH--HHHhcCcc-------cHHHHHHHHHHHHHH
Confidence            3566788888776654  4677777776654211  011223444432  44555444       578887777777655


Q ss_pred             CCChhHHH-hhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817          181 PLTETECM-EIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       181 ~~~~~~~~-~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      .... ..+ -+---.|.+|.|..+|++....+..+....+..++   ..........+.--+--.|+++|.+-  +.+.+
T Consensus       674 ~sv~-~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~---~~~peyi~~rEWMRIcfeLvd~Lks~--nKeiR  747 (975)
T COG5181         674 YSVH-RFRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTIC---MNSPEYIGVREWMRICFELVDSLKSW--NKEIR  747 (975)
T ss_pred             hhhh-cccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHH---hcCcccCCHHHHHHHHHHHHHHHHHh--hHHHH
Confidence            4322 111 11124689999999999999999999999998884   33222111111111233578888888  89999


Q ss_pred             HHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc---
Q 014817          260 KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK---  336 (418)
Q Consensus       260 ~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~---  336 (418)
                      .+|..++.-++..-.-      +.++..|+.-|...  +-+...+..+.         ..++....+...++..|.+   
T Consensus       748 R~A~~tfG~Is~aiGP------qdvL~~LlnnLkvq--eRq~Rvctsva---------I~iVae~cgpfsVlP~lm~dY~  810 (975)
T COG5181         748 RNATETFGCISRAIGP------QDVLDILLNNLKVQ--ERQQRVCTSVA---------ISIVAEYCGPFSVLPTLMSDYE  810 (975)
T ss_pred             HhhhhhhhhHHhhcCH------HHHHHHHHhcchHH--HHHhhhhhhhh---------hhhhHhhcCchhhHHHHHhccc
Confidence            9999998877532211      22333344333321  11112222211         1122212333344444433   


Q ss_pred             -CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          337 -ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       337 -~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                       .+..+|.-.++++..+..+-.+....- =.-+.+.|-+.|... ++.-|.-|..+++.|.-+
T Consensus       811 TPe~nVQnGvLkam~fmFeyig~~s~dY-vy~itPlleDAltDr-D~vhRqta~nvI~Hl~Ln  871 (975)
T COG5181         811 TPEANVQNGVLKAMCFMFEYIGQASLDY-VYSITPLLEDALTDR-DPVHRQTAMNVIRHLVLN  871 (975)
T ss_pred             CchhHHHHhHHHHHHHHHHHHHHHHHHH-HHHhhHHHHhhhccc-chHHHHHHHHHHHHHhcC
Confidence             677788887777766665222211110 012334444445444 888899999999988765

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.01  E-value=0.5  Score=43.96  Aligned_cols=223  Identities=15%  Similarity=0.084  Sum_probs=141.1

Q ss_pred             hHHHHHHHHHhhhcChhhhhHH-hhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhccc-CCchH
Q 014817          121 RLSALRRLRGLARDSDKNRSLI-SSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASD-ADKIT  198 (418)
Q Consensus       121 ~~~Al~~L~~l~~~~~~~~~~i-~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~  198 (418)
                      +.-|+..+.++.-. ++.|..+ .+...-..++.+++....     ..++|-+.+-++..|..+. ...+.+-+ -+.+.
T Consensus       166 rlfav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n~vg-----~~qlQY~SL~~iw~lTf~~-~~aqdi~K~~dli~  238 (432)
T COG5231         166 RLFAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQNYVG-----VKQLQYNSLIIIWILTFSK-ECAQDIDKMDDLIN  238 (432)
T ss_pred             HHHHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHhhhh-----hhhhHHHHHHHHHHHhcCH-HHHHHHHHHHHHHH
Confidence            45566777777643 4455543 334444567777766542     5788999999888888877 55544443 35677


Q ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC-CCChhhhHHHHHHHHHH-------
Q 014817          199 SLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL-SSYPRGLKVGIKALFAL-------  269 (418)
Q Consensus       199 ~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~~a~~aL~~L-------  269 (418)
                      .|+++.+.. ...+-+.+++++.|+++. .....-..... .|-+.+-+++|... -++++.+...-..=..|       
T Consensus       239 dli~iVk~~~keKV~Rlc~~Iv~n~~dK-~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l  316 (432)
T COG5231         239 DLIAIVKERAKEKVLRLCCGIVANVLDK-SPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKL  316 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcc-cccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhh
Confidence            888888765 356667788999999521 12222222222 34455666666543 22343333222211111       


Q ss_pred             cc------------------------ccccHHHHHHc--CchHHHHHHhcCCCcc-cHHHHHHHHHHHh-cCHhHHHHHH
Q 014817          270 CL------------------------VKQTRYKAVAA--GAAETLVDRLADFDKC-DAERALATVELLC-RIPAGCAEFA  321 (418)
Q Consensus       270 ~~------------------------~~~n~~~i~~~--G~v~~Lv~lL~~~~~~-~~~~a~~~L~~L~-~~~~~~~~i~  321 (418)
                      +.                        .++|..++.+.  ..+..|.++++...+. ...-|+.=+..+. ..|+++.-+.
T Consensus       317 ~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~vl~  396 (432)
T COG5231         317 CIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAVLS  396 (432)
T ss_pred             hHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHHHH
Confidence            10                        12366666653  4788899999877665 3455666666665 5788888888


Q ss_pred             hccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 014817          322 EHALTVPLLVKTILKISDRATEYAAGALAALC  353 (418)
Q Consensus       322 ~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~  353 (418)
                      .. |+=..++.+|.+++++++-+|+.++..+-
T Consensus       397 Ky-g~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         397 KY-GVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             Hh-hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            85 99999999999999999999999987754

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.00  E-value=0.13  Score=53.03  Aligned_cols=262  Identities=14%  Similarity=0.134  Sum_probs=139.2

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE  184 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~  184 (418)
                      ..+.+.++..+  .+.|..|+-.+.++-.   .+.+...+.|.++.|-+++.+.       ++.|..+|+.+|..+...+
T Consensus       124 ~Pl~~~l~d~~--~yvRktaa~~vakl~~---~~~~~~~~~gl~~~L~~ll~D~-------~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  124 DPLLKCLKDDD--PYVRKTAAVCVAKLFD---IDPDLVEDSGLVDALKDLLSDS-------NPMVVANALAALSEIHESH  191 (734)
T ss_pred             HHHHHhccCCC--hhHHHHHHHHHHHhhc---CChhhccccchhHHHHHHhcCC-------CchHHHHHHHHHHHHHHhC
Confidence            34555555443  3345556666666543   3556677799999999999855       6899999999999876544


Q ss_pred             hHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH
Q 014817          185 TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK  264 (418)
Q Consensus       185 ~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~  264 (418)
                      .+........-.+..++..|   +...-..-+.+|-.++   ..-. +.. ......++.+...|.+.  ++.+.-.+..
T Consensus       192 ~~~~~~~l~~~~~~~lL~al---~ec~EW~qi~IL~~l~---~y~p-~d~-~ea~~i~~r~~p~Lqh~--n~avvlsavK  261 (734)
T KOG1061|consen  192 PSVNLLELNPQLINKLLEAL---NECTEWGQIFILDCLA---EYVP-KDS-REAEDICERLTPRLQHA--NSAVVLSAVK  261 (734)
T ss_pred             CCCCcccccHHHHHHHHHHH---HHhhhhhHHHHHHHHH---hcCC-CCc-hhHHHHHHHhhhhhccC--CcceEeehHH
Confidence            22111111112223333333   3333333444455552   1111 001 11123555555666665  5556666666


Q ss_pred             HHHHHccccccHHHHHHcCchHHHHHHhcCCC----------------------------------c-ccHHHHHHHHHH
Q 014817          265 ALFALCLVKQTRYKAVAAGAAETLVDRLADFD----------------------------------K-CDAERALATVEL  309 (418)
Q Consensus       265 aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~----------------------------------~-~~~~~a~~~L~~  309 (418)
                      ++.++..........+..-.-++|+.++....                                  + -++..=+.++..
T Consensus       262 v~l~~~~~~~~~~~~~~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~  341 (734)
T KOG1061|consen  262 VILQLVKYLKQVNELLFKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIE  341 (734)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHH
Confidence            66665543332222232333344444443322                                  1 223333444444


Q ss_pred             HhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHH
Q 014817          310 LCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQ  389 (418)
Q Consensus       310 L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~  389 (418)
                      |+... +-+++..      -+.+.-...+...-..|++++.+++..-++.      .+.+..|++++... -+-+...+.
T Consensus       342 la~~~-nl~qvl~------El~eYatevD~~fvrkaIraig~~aik~e~~------~~cv~~lLell~~~-~~yvvqE~~  407 (734)
T KOG1061|consen  342 LANDA-NLAQVLA------ELKEYATEVDVDFVRKAVRAIGRLAIKAEQS------NDCVSILLELLETK-VDYVVQEAI  407 (734)
T ss_pred             HhhHh-HHHHHHH------HHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh------hhhHHHHHHHHhhc-ccceeeehh
Confidence            44321 1111221      2333333357777788999999887622111      77899999999766 556666778


Q ss_pred             HHHHHHHhhCCCC
Q 014817          390 LLLKLLRDSWPQD  402 (418)
Q Consensus       390 ~~L~~l~~~~~~~  402 (418)
                      .+++.+-+.+++.
T Consensus       408 vvi~dilRkyP~~  420 (734)
T KOG1061|consen  408 VVIRDILRKYPNK  420 (734)
T ss_pred             HHHHhhhhcCCCc
Confidence            8888888887754

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=95.97  E-value=0.0045  Score=59.21  Aligned_cols=51  Identities=22%  Similarity=0.448  Sum_probs=39.4

Q ss_pred             CCCCCCCcccCcCccccccCCe----ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           10 LSVQIPYHFRCPISLELMCDPV----TVCTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        10 ~~~~~~~~~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      .++.+.+.-+||+|++=|-+-+    ++.|.|+|--.|+.+|+.   .+||+|+--..
T Consensus       168 ~~~~~tELPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~---~scpvcR~~q~  222 (493)
T KOG0804|consen  168 PPTGLTELPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWD---SSCPVCRYCQS  222 (493)
T ss_pred             CCCCcccCCCcchhHhhcCccccceeeeecccccchHHHhhccc---CcChhhhhhcC
Confidence            3345555569999999998887    557999999999999976   45888764433

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.95  E-value=0.087  Score=46.08  Aligned_cols=106  Identities=16%  Similarity=0.109  Sum_probs=80.8

Q ss_pred             cCCCcccHHHHHHHHHHHhcCHhHHHHHHhcc---------------CChHHHHHHHhc------CChHHHHHHHHHHHH
Q 014817          293 ADFDKCDAERALATVELLCRIPAGCAEFAEHA---------------LTVPLLVKTILK------ISDRATEYAAGALAA  351 (418)
Q Consensus       293 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~---------------g~i~~Lv~~l~~------~~~~~~~~A~~~L~~  351 (418)
                      ..++......++.+|+||+..+++...+....               ..+..|+..+..      ....-..+.+.++.|
T Consensus         5 ~~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    5 TDPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             cCCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            34445667889999999999999988665531               246677777755      233445789999999


Q ss_pred             HhcCCHHHHHHHHhc--Ch--HHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          352 LCSASERCQRDAVSA--GV--LTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       352 l~~~~~~~~~~~~~~--g~--i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ++. -++.|+.+.+.  +.  +.+|+-++++. +...|+-++.+|+|++-..+
T Consensus        85 lS~-~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNccFd~~  135 (192)
T PF04063_consen   85 LSQ-LPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNCCFDTD  135 (192)
T ss_pred             hcC-CHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHhhccHh
Confidence            998 78888888764  44  77888888777 88999999999999987544

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.87  E-value=2.2  Score=45.53  Aligned_cols=246  Identities=15%  Similarity=0.126  Sum_probs=133.4

Q ss_pred             HHHHHHHHHhhcCCC--chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccc-cCCChhHHHHHHHHHh
Q 014817          102 SLVRTLLNQASSESN--TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVK-TASSPELAHESLALLV  178 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~--~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~-~~~~~~v~~~a~~~L~  178 (418)
                      +.+..++..+.+...  ........+..|...|-.-+.||+.+.+.|+++.|+..|...-... .....++.+.-+.++.
T Consensus       117 gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE  196 (802)
T PF13764_consen  117 GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE  196 (802)
T ss_pred             CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence            345566666654221  1122344444444445456899999999999999999985321100 0012566677776666


Q ss_pred             cCCCChhHH--Hh--hcccC--------CchHHHHHHhcCC----CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhH
Q 014817          179 MFPLTETEC--ME--IASDA--------DKITSLSSLLFHS----SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIF  242 (418)
Q Consensus       179 ~l~~~~~~~--~~--~i~~~--------g~i~~Lv~~L~~~----~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i  242 (418)
                      .+.......  ..  .....        .-+..|++.+.+.    ++.+....+++|-+|+  ..+++.-..++.   -.
T Consensus       197 ~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt--~G~~e~m~~Lv~---~F  271 (802)
T PF13764_consen  197 SLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLT--YGNEEKMDALVE---HF  271 (802)
T ss_pred             HHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHh--cCCHHHHHHHHH---HH
Confidence            554322111  00  10111        2266666666553    5888888999999994  333332223321   22


Q ss_pred             HHHHHHhhcCCCChhhhHHHHHHHHHHcc----c---cccHHHHHHcCchHHHHHHhcCCC----------------ccc
Q 014817          243 EGVIDILKNLSSYPRGLKVGIKALFALCL----V---KQTRYKAVAAGAAETLVDRLADFD----------------KCD  299 (418)
Q Consensus       243 ~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~----~---~~n~~~i~~~G~v~~Lv~lL~~~~----------------~~~  299 (418)
                      .+.+++=+-+.....--..-+..+..++.    +   ..-|..+++.|++...+++|...-                ...
T Consensus       272 ~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  272 KPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             HHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence            33333221110011111222444444432    2   235788899999999999886321                122


Q ss_pred             HHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc--CChHHHHHHHHHHHHHhc
Q 014817          300 AERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK--ISDRATEYAAGALAALCS  354 (418)
Q Consensus       300 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~  354 (418)
                      ...++.+|.-|+.+....+.+... +++ .++..|..  ++..+-..|=.+|-.|+.
T Consensus       352 Lp~iL~lL~GLa~gh~~tQ~~~~~-~~l-~~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  352 LPYILRLLRGLARGHEPTQLLIAE-QLL-PLLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHh-hHH-HHHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            345888999999776655555553 666 55555654  345555566666666665

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.84  E-value=0.41  Score=50.15  Aligned_cols=101  Identities=17%  Similarity=0.172  Sum_probs=47.0

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH
Q 014817          197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR  276 (418)
Q Consensus       197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~  276 (418)
                      +..+.+=+++.++.+|..|.+++..+    ..   .+.+   ..+++++.+++.++  ++.+++.|+-++.++-.-+  +
T Consensus        94 vNti~kDl~d~N~~iR~~AlR~ls~l----~~---~el~---~~~~~~ik~~l~d~--~ayVRk~Aalav~kly~ld--~  159 (757)
T COG5096          94 VNTIQKDLQDPNEEIRGFALRTLSLL----RV---KELL---GNIIDPIKKLLTDP--HAYVRKTAALAVAKLYRLD--K  159 (757)
T ss_pred             HHHHHhhccCCCHHHHHHHHHHHHhc----Ch---HHHH---HHHHHHHHHHccCC--cHHHHHHHHHHHHHHHhcC--H
Confidence            34444444555555555555555444    11   1111   12445555555555  4555555555555553322  2


Q ss_pred             HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817          277 YKAVAAGAAETLVDRLADFDKCDAERALATVELLC  311 (418)
Q Consensus       277 ~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~  311 (418)
                      ....+.|.+..+..++.+.++.+..+|+.+|..+-
T Consensus       160 ~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~  194 (757)
T COG5096         160 DLYHELGLIDILKELVADSDPIVIANALASLAEID  194 (757)
T ss_pred             hhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhc
Confidence            22334455555555555555555555555555443

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=95.75  E-value=0.029  Score=48.92  Aligned_cols=78  Identities=22%  Similarity=0.231  Sum_probs=66.0

Q ss_pred             HHHHHHcCchHHHHHHhcC---------CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHH
Q 014817          276 RYKAVAAGAAETLVDRLAD---------FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAA  346 (418)
Q Consensus       276 ~~~i~~~G~v~~Lv~lL~~---------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~  346 (418)
                      ...+++.||+..|+.+|..         .+......++.+|..|..+..|...+..+.+++..++..|.+.+..++..|+
T Consensus       100 v~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~l  179 (187)
T PF06371_consen  100 VQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLAL  179 (187)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHH
T ss_pred             HHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHH
Confidence            5677889999999998862         1235667899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHh
Q 014817          347 GALAALC  353 (418)
Q Consensus       347 ~~L~~l~  353 (418)
                      .+|..+|
T Consensus       180 eiL~~lc  186 (187)
T PF06371_consen  180 EILAALC  186 (187)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9999987

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.67  E-value=0.17  Score=52.15  Aligned_cols=191  Identities=12%  Similarity=0.099  Sum_probs=117.3

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV  245 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L  245 (418)
                      ++.++..|+..+..+..+.  ...     -...+|.+.++++++.+|..++..+.++   ..  ...... ...|.++.|
T Consensus        99 np~iR~lAlrtm~~l~v~~--i~e-----y~~~Pl~~~l~d~~~yvRktaa~~vakl---~~--~~~~~~-~~~gl~~~L  165 (734)
T KOG1061|consen   99 NPLIRALALRTMGCLRVDK--ITE-----YLCDPLLKCLKDDDPYVRKTAAVCVAKL---FD--IDPDLV-EDSGLVDAL  165 (734)
T ss_pred             CHHHHHHHhhceeeEeehH--HHH-----HHHHHHHHhccCCChhHHHHHHHHHHHh---hc--CChhhc-cccchhHHH
Confidence            7888888888777665433  122     3468999999999999999988888888   32  223333 447999999


Q ss_pred             HHHhhcCCCChhhhHHHHHHHHHHcccccc--HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHh-HHHHHHh
Q 014817          246 IDILKNLSSYPRGLKVGIKALFALCLVKQT--RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPA-GCAEFAE  322 (418)
Q Consensus       246 v~lL~~~~~~~~~~~~a~~aL~~L~~~~~n--~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~  322 (418)
                      -.++.+.  ++.+..+|+.+|..+...+.+  ...+ ..-.+..++..|...+.--+...+..|.+=.-.++ ....+  
T Consensus       166 ~~ll~D~--~p~VVAnAlaaL~eI~e~~~~~~~~~l-~~~~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i--  240 (734)
T KOG1061|consen  166 KDLLSDS--NPMVVANALAALSEIHESHPSVNLLEL-NPQLINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDI--  240 (734)
T ss_pred             HHHhcCC--CchHHHHHHHHHHHHHHhCCCCCcccc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHH--
Confidence            9999976  899999999999999866543  1111 11123333444433222222233333332222222 22233  


Q ss_pred             ccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC
Q 014817          323 HALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD  379 (418)
Q Consensus       323 ~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~  379 (418)
                          +..+...+.+.+..+.-.+.+++..+...-+. .....-..+.++|+.++.+.
T Consensus       241 ----~~r~~p~Lqh~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~  292 (734)
T KOG1061|consen  241 ----CERLTPRLQHANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSE  292 (734)
T ss_pred             ----HHHhhhhhccCCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeeccc
Confidence                33455566667777777888888777763323 33344455666777777555

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.66  E-value=0.25  Score=51.24  Aligned_cols=199  Identities=16%  Similarity=0.050  Sum_probs=138.0

Q ss_pred             HHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHH-HHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH
Q 014817          186 ECMEIASDADKITSLSSLLFHSSIEVRVNSAALIE-IVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK  264 (418)
Q Consensus       186 ~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~-~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~  264 (418)
                      .-+...++.|+...|+++...+.++.+..+..+|. .+   +. ...     ....+++++...+.+.. .......++.
T Consensus       495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i---~f-~~~-----~~~~v~~~~~s~~~~d~-~~~en~E~L~  564 (748)
T KOG4151|consen  495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKI---DF-PGE-----RSYEVVKPLDSALHNDE-KGLENFEALE  564 (748)
T ss_pred             HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhc---CC-CCC-----chhhhhhhhcchhhhhH-HHHHHHHHHH
Confidence            45777789999999999999999998888888877 33   11 111     11346777777777652 2334557899


Q ss_pred             HHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHH-HHHhccCChHHHHHHHhcCChHHH
Q 014817          265 ALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCA-EFAEHALTVPLLVKTILKISDRAT  342 (418)
Q Consensus       265 aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~-~i~~~~g~i~~Lv~~l~~~~~~~~  342 (418)
                      ++.||++.+ ..|.+++..-+++.+=.++...++..+..++..+.||.-++-.-+ .+++....++.....+........
T Consensus       565 altnLas~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~  644 (748)
T KOG4151|consen  565 ALTNLASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFE  644 (748)
T ss_pred             HhhcccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHh
Confidence            999999775 477888887777777777777788889999999999998776444 455534567777776666666666


Q ss_pred             HHHHHHHHHHhcCCHHHHH-HHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 014817          343 EYAAGALAALCSASERCQR-DAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLL  395 (418)
Q Consensus       343 ~~A~~~L~~l~~~~~~~~~-~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l  395 (418)
                      ..+++++..|+.-+..+.. ...-......+..++.+. ++.+|.......-++
T Consensus       645 lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrgl~~~ln~  697 (748)
T KOG4151|consen  645 LAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDE-DDEIQHRGLVIILNL  697 (748)
T ss_pred             hhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhhhhhhhhH
Confidence            6777776666664444444 222345667777888777 777776655555443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.61  E-value=0.31  Score=50.53  Aligned_cols=242  Identities=12%  Similarity=0.057  Sum_probs=151.7

Q ss_pred             hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh-cCCCChhHHHhhcccCCchHHHHHHhcCCC-HHHHHH
Q 014817          137 KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV-MFPLTETECMEIASDADKITSLSSLLFHSS-IEVRVN  214 (418)
Q Consensus       137 ~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~-~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~-~~~~~~  214 (418)
                      .-+...++-|+...|+++....       .++....+..+|. .+......      ....++++...+.... .--...
T Consensus       495 ~~~~~~Ik~~~~~aLlrl~~~q-------~e~akl~~~~aL~~~i~f~~~~------~~~v~~~~~s~~~~d~~~~en~E  561 (748)
T KOG4151|consen  495 YERAKKIKPGGYEALLRLGQQQ-------FEEAKLKWYHALAGKIDFPGER------SYEVVKPLDSALHNDEKGLENFE  561 (748)
T ss_pred             HhcCccccccHHHHHHHHHHHh-------chHHHHHHHHHHhhhcCCCCCc------hhhhhhhhcchhhhhHHHHHHHH
Confidence            3444567789999999988766       3566666666666 33332211      2245566666554432 222345


Q ss_pred             HHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHHHH-cCchHHHHHHh
Q 014817          215 SAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKAVA-AGAAETLVDRL  292 (418)
Q Consensus       215 a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~-~G~v~~Lv~lL  292 (418)
                      +..++.||+  +.++..|..|.. .-+++.+-.++-..  ++..+.+++..+.||..+.. ....+++ ...++.....+
T Consensus       562 ~L~altnLa--s~s~s~r~~i~k-e~~~~~ie~~~~ee--~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~  636 (748)
T KOG4151|consen  562 ALEALTNLA--SISESDRQKILK-EKALGKIEELMTEE--NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNL  636 (748)
T ss_pred             HHHHhhccc--CcchhhHHHHHH-HhcchhhHHHhhcc--cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHH
Confidence            788999996  566677777754 34556555555555  78999999999999998776 4444555 56677766666


Q ss_pred             cCCCcccHHHHHHHHHHHhcCHhH-HHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHH
Q 014817          293 ADFDKCDAERALATVELLCRIPAG-CAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQ  371 (418)
Q Consensus       293 ~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~  371 (418)
                      ...+....-.+++++..++...++ ...+.+.......++..+.+.+..+|-..+....|+.....+....+.....++.
T Consensus       637 e~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~~ei~~~~~~~~~~~~  716 (748)
T KOG4151|consen  637 EVADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEALFEIAEKIFETEVMEL  716 (748)
T ss_pred             HhhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHHHHHHHHhccchHHHH
Confidence            655555555556666644433322 2213333356778888889999999999999999977766677777766666666


Q ss_pred             HHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          372 LLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       372 L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      +..+-.-. -...++.+..-|...-+
T Consensus       717 l~~~~~~~-~a~~~~~~~~~l~~a~~  741 (748)
T KOG4151|consen  717 LSGLQKLN-RAPKREDAAPCLSAAEE  741 (748)
T ss_pred             HHHHHHhh-hhhhhhhhhhHHHHHHH
Confidence            54433222 33444444444444333

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.58  E-value=0.7  Score=42.01  Aligned_cols=221  Identities=15%  Similarity=0.044  Sum_probs=136.6

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcc-cCCchHHHHHH-------hcCCC--H---HHHHHHHHHHHHHHhcccchhhh
Q 014817          166 SPELAHESLALLVMFPLTETECMEIAS-DADKITSLSSL-------LFHSS--I---EVRVNSAALIEIVLAGMRSQELR  232 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~~-------L~~~~--~---~~~~~a~~~L~~L~~~s~~~~~~  232 (418)
                      +++-++.|+.-|..--..-++....+. ..|.+..|++=       |...+  .   .-..+|...|..+   +.+++.|
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~v---Ashpetr   84 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCV---ASHPETR   84 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHH---HH-TTTH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHH---HcChHHH
Confidence            466788888877754333323444444 45777666542       22221  1   3334566666677   7799999


Q ss_pred             hHhhchhhhHHHHHHHhhcCCCC---hhhhHHHHHHHHHHccccc--cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817          233 AQISNLDEIFEGVIDILKNLSSY---PRGLKVGIKALFALCLVKQ--TRYKAVAAGAAETLVDRLADFDKCDAERALATV  307 (418)
Q Consensus       233 ~~i~~~~g~i~~Lv~lL~~~~~~---~~~~~~a~~aL~~L~~~~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L  307 (418)
                      ..+.. ....--|...|+....+   +-.+-.+++++..|...++  ...-+.+...+|..++.|..|+.-.+.-|..++
T Consensus        85 ~~Fl~-a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIl  163 (262)
T PF04078_consen   85 MPFLK-AHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFIL  163 (262)
T ss_dssp             HHHHH-TTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred             HHHHH-cCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHH
Confidence            88865 44544566666654211   3467789999999997553  455567889999999999988877788899999


Q ss_pred             HHHhcCHhHHHHHHhccC-------ChHHHHHHH-hcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhh-
Q 014817          308 ELLCRIPAGCAEFAEHAL-------TVPLLVKTI-LKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQS-  378 (418)
Q Consensus       308 ~~L~~~~~~~~~i~~~~g-------~i~~Lv~~l-~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-  378 (418)
                      ..+-.++.|-+.+...+.       ++..+|..+ ...+++.-++.+++-..|+. +++.+..+.+  .+|.   .|.+ 
T Consensus       164 qKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd-nprar~aL~~--~LP~---~Lrd~  237 (262)
T PF04078_consen  164 QKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD-NPRAREALRQ--CLPD---QLRDG  237 (262)
T ss_dssp             HHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT-STTHHHHHHH--HS-G---GGTSS
T ss_pred             HHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc-CHHHHHHHHH--hCcH---HHhcH
Confidence            999888888777655322       333444433 33788999999999999998 6666665432  2221   2211 


Q ss_pred             ------CCCHHHHHHHHHHHHHHH
Q 014817          379 ------DCTDRAKRKAQLLLKLLR  396 (418)
Q Consensus       379 ------~~~~~~~~~A~~~L~~l~  396 (418)
                            ..++..|+.-..++.|+.
T Consensus       238 ~f~~~l~~D~~~k~~l~qLl~nl~  261 (262)
T PF04078_consen  238 TFSNILKDDPSTKRWLQQLLSNLN  261 (262)
T ss_dssp             TTTTGGCS-HHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhc
Confidence                  126777777777776653

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.48  E-value=2.2  Score=44.01  Aligned_cols=251  Identities=13%  Similarity=0.115  Sum_probs=141.1

Q ss_pred             hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHH-HHHHHhcCCCChhHHHhhcccCCchHH
Q 014817          121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHE-SLALLVMFPLTETECMEIASDADKITS  199 (418)
Q Consensus       121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~-a~~~L~~l~~~~~~~~~~i~~~g~i~~  199 (418)
                      ..-|+..+.++-.  .++++.+..     -+-++|.+++.     ..-|+.. |+..|+.+-.+    -..+-..++...
T Consensus       128 v~LAL~~I~niG~--re~~ea~~~-----DI~KlLvS~~~-----~~~vkqkaALclL~L~r~s----pDl~~~~~W~~r  191 (938)
T KOG1077|consen  128 VCLALHCIANIGS--REMAEAFAD-----DIPKLLVSGSS-----MDYVKQKAALCLLRLFRKS----PDLVNPGEWAQR  191 (938)
T ss_pred             HHHHHHHHHhhcc--HhHHHHhhh-----hhHHHHhCCcc-----hHHHHHHHHHHHHHHHhcC----ccccChhhHHHH
Confidence            3456666666632  344444331     22366666642     2334444 44444443322    223334578999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCC-----------CChhhhHHHHHHHHH
Q 014817          200 LSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLS-----------SYPRGLKVGIKALFA  268 (418)
Q Consensus       200 Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~-----------~~~~~~~~a~~aL~~  268 (418)
                      ++.+|...+..+...++..+-.|+. -..++++-.+..   ++..|..+.....           ..|=.+..++++|.+
T Consensus       192 iv~LL~D~~~gv~ta~~sLi~~lvk-~~p~~yk~~~~~---avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~  267 (938)
T KOG1077|consen  192 IVHLLDDQHMGVVTAATSLIEALVK-KNPESYKTCLPL---AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQI  267 (938)
T ss_pred             HHHHhCccccceeeehHHHHHHHHH-cCCHHHhhhHHH---HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHh
Confidence            9999999888887888888888852 234444444422   4444444443211           034467777888877


Q ss_pred             Hccccc--cHHHHHHcCchHHHHHHhcCC--CcccHH----H-HHHHHHHHh-cCHhHHHHHHhccCChHHHHHHHhcCC
Q 014817          269 LCLVKQ--TRYKAVAAGAAETLVDRLADF--DKCDAE----R-ALATVELLC-RIPAGCAEFAEHALTVPLLVKTILKIS  338 (418)
Q Consensus       269 L~~~~~--n~~~i~~~G~v~~Lv~lL~~~--~~~~~~----~-a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~~~  338 (418)
                      .-...+  .+.++.  .+++.++...+.+  ...+++    + .+--.-+|+ ..+...+.+..   ++..|-+.|.+..
T Consensus       268 ~p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~---~~~~Lg~fls~rE  342 (938)
T KOG1077|consen  268 YPTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSR---AVNQLGQFLSHRE  342 (938)
T ss_pred             CCCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHH---HHHHHHHHhhccc
Confidence            744443  333332  2344444444422  112221    1 111112233 22333344433   3667778888888


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ..++--|+..+..||. ++.....+...  ...++..|....+..+|++|..+|-.++...
T Consensus       343 ~NiRYLaLEsm~~L~s-s~~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~  400 (938)
T KOG1077|consen  343 TNIRYLALESMCKLAS-SEFSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVS  400 (938)
T ss_pred             ccchhhhHHHHHHHHh-ccchHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchh
Confidence            8888888888888887 33334444434  6777788875668999999999999998754

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.40  E-value=0.33  Score=49.36  Aligned_cols=184  Identities=13%  Similarity=0.070  Sum_probs=122.7

Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc--
Q 014817          196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK--  273 (418)
Q Consensus       196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~--  273 (418)
                      ++..|..+...++..++.+|+..|..|   +..-    ++.  .-.....++++.+.  +..++.+|+.+++-.+...  
T Consensus       199 ~~~~l~~~~~~~D~~Vrt~A~eglL~L---~eg~----kL~--~~~Y~~A~~~lsD~--~e~VR~aAvqlv~v~gn~~p~  267 (823)
T KOG2259|consen  199 AARGLIYLEHDQDFRVRTHAVEGLLAL---SEGF----KLS--KACYSRAVKHLSDD--YEDVRKAAVQLVSVWGNRCPA  267 (823)
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHhh---cccc----ccc--HHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhcCCC
Confidence            344477888888999999999999888   4311    221  22556678888887  7899999987777654321  


Q ss_pred             -----ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc------------------------------------
Q 014817          274 -----QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR------------------------------------  312 (418)
Q Consensus       274 -----~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~------------------------------------  312 (418)
                           .+..++.++ ++..+-+.+.+.+-.++..|..+|..+-.                                    
T Consensus       268 ~~e~e~~e~kl~D~-aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~Ge  346 (823)
T KOG2259|consen  268 PLERESEEEKLKDA-AFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGE  346 (823)
T ss_pred             cccchhhhhhhHHH-HHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCC
Confidence                 133344333 55666666666555555444444432221                                    


Q ss_pred             C---------------HhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHh
Q 014817          313 I---------------PAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQ  377 (418)
Q Consensus       313 ~---------------~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~  377 (418)
                      +               +++-..++.+ |+--.+|.-+..+--++++.|+..+..|+..+|.....     .+..|++.+.
T Consensus       347 wSsGk~~~advpsee~d~~~~siI~s-GACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~FA~~-----aldfLvDMfN  420 (823)
T KOG2259|consen  347 WSSGKEWNADVPSEEDDEEEESIIPS-GACGALVHGLEDEFYEVRRAAVASLCSLATSSPGFAVR-----ALDFLVDMFN  420 (823)
T ss_pred             cccCccccccCchhhccccccccccc-cccceeeeechHHHHHHHHHHHHHHHHHHcCCCCcHHH-----HHHHHHHHhc
Confidence            0               0111123332 55566777676667789999999999999977777665     6788888886


Q ss_pred             hCCCHHHHHHHHHHHHHHHhh
Q 014817          378 SDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       378 ~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      .. .+.+|.+|...|..++.+
T Consensus       421 DE-~~~VRL~ai~aL~~Is~~  440 (823)
T KOG2259|consen  421 DE-IEVVRLKAIFALTMISVH  440 (823)
T ss_pred             cH-HHHHHHHHHHHHHHHHHH
Confidence            66 889999999999999887

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.40  E-value=0.2  Score=38.57  Aligned_cols=67  Identities=21%  Similarity=0.306  Sum_probs=49.8

Q ss_pred             CChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHh--cChHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 014817          325 LTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVS--AGVLTQLLLLVQSDCTDRAKRKAQLLLKLL  395 (418)
Q Consensus       325 g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l  395 (418)
                      -.+++++..+...+.+++..|+.+|+||++.   .+..+..  ..++..|..++... ++++|..|.-+-+.|
T Consensus        27 ~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~~D~-d~~Vr~~a~~Ld~ll   95 (97)
T PF12755_consen   27 EILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLSADP-DENVRSAAELLDRLL   95 (97)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHcCC-chhHHHHHHHHHHHh
Confidence            4688899988889999999999999999972   2333333  45777777777555 888887776665554

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.33  E-value=0.16  Score=39.08  Aligned_cols=68  Identities=21%  Similarity=0.201  Sum_probs=51.5

Q ss_pred             hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH--cCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817          239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA--AGAAETLVDRLADFDKCDAERALATVELLC  311 (418)
Q Consensus       239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~--~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~  311 (418)
                      ..++++++..+.+.  +..++..|+.+|+|++..-..  .++.  ..+++.|.+++.+.++.++ .++..|-+|-
T Consensus        26 ~~Il~pVL~~~~D~--d~rVRy~AcEaL~ni~k~~~~--~~l~~f~~IF~~L~kl~~D~d~~Vr-~~a~~Ld~ll   95 (97)
T PF12755_consen   26 DEILPPVLKCFDDQ--DSRVRYYACEALYNISKVARG--EILPYFNEIFDALCKLSADPDENVR-SAAELLDRLL   95 (97)
T ss_pred             HHHHHHHHHHcCCC--cHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHcCCchhHH-HHHHHHHHHh
Confidence            34899999999998  899999999999999865433  3332  4678888888888777754 4446666553

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.30  E-value=0.014  Score=38.15  Aligned_cols=43  Identities=23%  Similarity=0.317  Sum_probs=22.0

Q ss_pred             CcCcccccc--CCeec--CCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817           20 CPISLELMC--DPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPL   62 (418)
Q Consensus        20 Cpi~~~~~~--dPv~~--~~g~~~~r~~i~~~~~~~~~~cp~~~~~l   62 (418)
                      ||+|-+.|.  |--..  +||+..||.|..+..+.+...||-|++++
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            788888872  22233  58999999998888876688899999875

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.22  E-value=0.02  Score=38.09  Aligned_cols=44  Identities=27%  Similarity=0.477  Sum_probs=24.4

Q ss_pred             ccCcCccccccCCeec-CCCCc--ccHHHHHH-HHHcCCCCCCCCCCC
Q 014817           18 FRCPISLELMCDPVTV-CTGQT--YDRPSIES-WVATGNTTCPVTRSP   61 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~-~~g~~--~~r~~i~~-~~~~~~~~cp~~~~~   61 (418)
                      +.|||+...|+-|+-. .|.|.  |+-...-+ ....+.-.||.|+++
T Consensus         3 L~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    3 LRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             SB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            6899999999999977 58876  77644444 344445679999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=95.21  E-value=0.019  Score=50.26  Aligned_cols=56  Identities=20%  Similarity=0.258  Sum_probs=42.6

Q ss_pred             ccCcCccccccCCeec-CCCCcccHHHHHHHHHc-CCCCCCC--CCCCCCCCCCcccHHH
Q 014817           18 FRCPISLELMCDPVTV-CTGQTYDRPSIESWVAT-GNTTCPV--TRSPLTDFTLIPNHTL   73 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~-~~~~cp~--~~~~l~~~~l~~n~~L   73 (418)
                      .+|||+.+...-|++. .|+|.|++..|.+++.. ....||.  |.+......+..++-|
T Consensus       190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~Il  249 (275)
T COG5627         190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHIL  249 (275)
T ss_pred             ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHH
Confidence            4999999999999988 59999999999999873 3456887  5454544555544433

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.15  E-value=3  Score=39.53  Aligned_cols=195  Identities=17%  Similarity=0.134  Sum_probs=112.8

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc---
Q 014817          197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV---  272 (418)
Q Consensus       197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~---  272 (418)
                      +...+..|...+...|+.+...|.++.   ...-....+.. ..-++..+.+.++.+  ..+.+.-|++++.-|+..   
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l---~~~~~~d~v~~~~~tL~~~~~k~lkkg--~~~E~~lA~~~l~Ll~ltlg~  119 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRAL---SSRYLPDFVEDRRETLLDALLKSLKKG--KSEEQALAARALALLALTLGA  119 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHH---HhcccHHHHHHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHhhhcCC
Confidence            444555666677899999999999884   22222233321 234788888889888  556677788888877755   


Q ss_pred             cccHHHHHHcCchHHHHHHhcCCCcc--cHHHHHHHHHHHh---cC-HhHHHHHHhccCChHHHHHHHhc----------
Q 014817          273 KQTRYKAVAAGAAETLVDRLADFDKC--DAERALATVELLC---RI-PAGCAEFAEHALTVPLLVKTILK----------  336 (418)
Q Consensus       273 ~~n~~~i~~~G~v~~Lv~lL~~~~~~--~~~~a~~~L~~L~---~~-~~~~~~i~~~~g~i~~Lv~~l~~----------  336 (418)
                      ......+.+ ...|.|.+.+.++...  .+..++.+|..++   .. .+......+.-..+-.+. .+..          
T Consensus       120 g~~~~ei~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~-~~~~~~~~~~~~~~  197 (309)
T PF05004_consen  120 GEDSEEIFE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLS-ILKSDGNAPVVAAE  197 (309)
T ss_pred             CccHHHHHH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHH-hcCcCCCcccccCC
Confidence            244555544 4788899988866543  3344444554443   22 222221111100011111 1111          


Q ss_pred             CChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          337 ISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       337 ~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      .++.+...|+.+-.-|.. -+...... .-...++.|..+|++. +..+|-.|...|..|.+...
T Consensus       198 ~~~~l~~aAL~aW~lLlt~~~~~~~~~-~~~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  198 DDAALVAAALSAWALLLTTLPDSKLED-LLEEALPALSELLDSD-DVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             CccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHhh
Confidence            123455555555333332 22222222 2245689999999888 99999999999999877654

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.14  E-value=0.57  Score=42.61  Aligned_cols=153  Identities=15%  Similarity=0.112  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh-hHHHhhcccCCchHH
Q 014817          121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE-TECMEIASDADKITS  199 (418)
Q Consensus       121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~  199 (418)
                      ...|+.-+.-+++ +++.|..+.++.+.--|..+|.......  ..+.++-.++.+++.|...+ .+.-..+.+.+.+|.
T Consensus        67 VcnaLaLlQ~vAs-hpetr~~Fl~a~iplyLyPfL~tt~k~r--~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiipl  143 (262)
T PF04078_consen   67 VCNALALLQCVAS-HPETRMPFLKAHIPLYLYPFLNTTSKTR--PFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPL  143 (262)
T ss_dssp             HHHHHHHHHHHHH--TTTHHHHHHTTGGGGGHHHHH----SH--HHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHH
T ss_pred             HHHHHHHHHHHHc-ChHHHHHHHHcCchhhehhhhhcccccc--ccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHH
Confidence            3567777777776 6889999999998877888886543200  02457778888888776543 345666678999999


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchh-------hhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817          200 LSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLD-------EIFEGVIDILKNLSSYPRGLKVGIKALFALCLV  272 (418)
Q Consensus       200 Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~-------g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~  272 (418)
                      .++.|..|+.-.|..|+.++..+   -.+|..-..+....       .++..++.-+.... ++...++..++-..|+.+
T Consensus       144 cLr~me~GselSKtvAtfIlqKI---L~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~p-S~RLLKhIIrCYlRLsdn  219 (262)
T PF04078_consen  144 CLRIMEFGSELSKTVATFILQKI---LLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQP-SPRLLKHIIRCYLRLSDN  219 (262)
T ss_dssp             HHHHHHHS-HHHHHHHHHHHHHH---HHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS---HHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHhccHHHHHHHHHHHHHH---HcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCC-ChhHHHHHHHHHHHHccC
Confidence            99999999999999999999999   56665555554322       23333443333332 789999999999999999


Q ss_pred             cccHHHHH
Q 014817          273 KQTRYKAV  280 (418)
Q Consensus       273 ~~n~~~i~  280 (418)
                      ...+..+.
T Consensus       220 prar~aL~  227 (262)
T PF04078_consen  220 PRAREALR  227 (262)
T ss_dssp             TTHHHHHH
T ss_pred             HHHHHHHH
Confidence            98887764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=95.11  E-value=1.1  Score=47.19  Aligned_cols=103  Identities=16%  Similarity=0.119  Sum_probs=76.7

Q ss_pred             hHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHH
Q 014817          241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEF  320 (418)
Q Consensus       241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i  320 (418)
                      +++.+.+=+++.  ++..+..|+++|..|      +..-+-..+++++.+++.++++.++..|+-++..+-+-  .+...
T Consensus        93 avNti~kDl~d~--N~~iR~~AlR~ls~l------~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l--d~~l~  162 (757)
T COG5096          93 AVNTIQKDLQDP--NEEIRGFALRTLSLL------RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL--DKDLY  162 (757)
T ss_pred             HHHHHHhhccCC--CHHHHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc--CHhhh
Confidence            456666666777  888999888888877      22223334788888999988888888888888776632  23344


Q ss_pred             HhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          321 AEHALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       321 ~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      .+ .|.+..+..++...++.+..+|+.+|..+..
T Consensus       163 ~~-~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~  195 (757)
T COG5096         163 HE-LGLIDILKELVADSDPIVIANALASLAEIDP  195 (757)
T ss_pred             hc-ccHHHHHHHHhhCCCchHHHHHHHHHHHhch
Confidence            44 5888888888888999999999999888765

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.06  E-value=0.0067  Score=54.09  Aligned_cols=54  Identities=17%  Similarity=0.384  Sum_probs=42.1

Q ss_pred             cccCcCccccccCCe----------ecCCCCcccHHHHHHHHHcC-CCCCCCCCCCCCCCCCccc
Q 014817           17 HFRCPISLELMCDPV----------TVCTGQTYDRPSIESWVATG-NTTCPVTRSPLTDFTLIPN   70 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv----------~~~~g~~~~r~~i~~~~~~~-~~~cp~~~~~l~~~~l~~n   70 (418)
                      +=.|-+|++-+-+-+          .++|||+|---||.-|---| ..+||-|++......+..|
T Consensus       224 d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn  288 (328)
T KOG1734|consen  224 DSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN  288 (328)
T ss_pred             cchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence            457999998877666          78999999999999997643 6789999987654444333

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=95.05  E-value=1.1  Score=48.27  Aligned_cols=153  Identities=13%  Similarity=0.036  Sum_probs=97.8

Q ss_pred             hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC-CcccHHHHHHHHHHHhcCHhHH
Q 014817          239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF-DKCDAERALATVELLCRIPAGC  317 (418)
Q Consensus       239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~  317 (418)
                      +++++.|...|++.  +..++..|+.-+..+....+  ..+++ .+|...++++.-. +....-.++-+|+.|+.-.--.
T Consensus       340 E~vie~Lls~l~d~--dt~VrWSaAKg~grvt~rlp--~~Lad-~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLl  414 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDT--DTVVRWSAAKGLGRVTSRLP--PELAD-QVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLL  414 (1133)
T ss_pred             HHHHHHHHHhccCC--cchhhHHHHHHHHHHHccCc--HHHHH-HHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcc
Confidence            46888888888888  89999999999999988776  33333 3677777766533 3455567888888888522211


Q ss_pred             HHHHhccCChHHHHHHHhc--------CChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHH
Q 014817          318 AEFAEHALTVPLLVKTILK--------ISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKA  388 (418)
Q Consensus       318 ~~i~~~~g~i~~Lv~~l~~--------~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A  388 (418)
                      -...+  .++|.+++-+.-        ....++..|+-++|.+++ +++...+-+...=.-..|...+... .-..|++|
T Consensus       415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDr-evncRRAA  491 (1133)
T KOG1943|consen  415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDR-EVNCRRAA  491 (1133)
T ss_pred             hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCc-hhhHhHHH
Confidence            11222  245555555432        355688999999999998 4544333222111111222233344 78899999


Q ss_pred             HHHHHHHHhhC
Q 014817          389 QLLLKLLRDSW  399 (418)
Q Consensus       389 ~~~L~~l~~~~  399 (418)
                      +.+++......
T Consensus       492 sAAlqE~VGR~  502 (1133)
T KOG1943|consen  492 SAALQENVGRQ  502 (1133)
T ss_pred             HHHHHHHhccC
Confidence            88888777653

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.96  E-value=0.019  Score=52.07  Aligned_cols=49  Identities=16%  Similarity=0.302  Sum_probs=39.5

Q ss_pred             cCcCcc-ccccCCe----ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014817           19 RCPISL-ELMCDPV----TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTL   67 (418)
Q Consensus        19 ~Cpi~~-~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l   67 (418)
                      .||.|+ +.+..|-    +.+|||+-|-+|...-|..|...||.|+..+....+
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf   55 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF   55 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence            388887 3555664    338999999999999999999999999988765544

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=94.90  E-value=0.015  Score=38.84  Aligned_cols=46  Identities=11%  Similarity=0.096  Sum_probs=35.0

Q ss_pred             ccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014817           18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT   66 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~   66 (418)
                      ..|=.|...=...++++|||..|+.|..-   +...-||.|+.++...+
T Consensus         8 ~~~~~~~~~~~~~~~~pCgH~I~~~~f~~---~rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    8 QPCVFCGFVGTKGTVLPCGHLICDNCFPG---ERYNGCPFCGTPFEFDD   53 (55)
T ss_pred             eeEEEccccccccccccccceeeccccCh---hhccCCCCCCCcccCCC
Confidence            34666777778899999999999988332   33566999999987554

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=94.88  E-value=0.034  Score=36.88  Aligned_cols=41  Identities=24%  Similarity=0.537  Sum_probs=31.6

Q ss_pred             cCcCccc--cccCCeecCCC-----CcccHHHHHHHHHc-CCCCCCCCC
Q 014817           19 RCPISLE--LMCDPVTVCTG-----QTYDRPSIESWVAT-GNTTCPVTR   59 (418)
Q Consensus        19 ~Cpi~~~--~~~dPv~~~~g-----~~~~r~~i~~~~~~-~~~~cp~~~   59 (418)
                      .|-||.+  .-.+|.+.||.     +.|=+.|+.+|+.. +...||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3778885  55678888885     56889999999974 356799985

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=94.88  E-value=0.44  Score=47.44  Aligned_cols=153  Identities=16%  Similarity=0.044  Sum_probs=109.2

Q ss_pred             HHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCc----ccHHHHHHHHHHHhcCHhHH
Q 014817          242 FEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDK----CDAERALATVELLCRIPAGC  317 (418)
Q Consensus       242 i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~----~~~~~a~~~L~~L~~~~~~~  317 (418)
                      ...+.+++.++  +...+..|...|..++........++...++..|.+++.+++.    .+...++.++..|-.+.-..
T Consensus        85 a~~i~e~l~~~--~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs  162 (713)
T KOG2999|consen   85 AKRIMEILTEG--NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS  162 (713)
T ss_pred             HHHHHHHHhCC--CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence            34567777777  6777777889999999888889999999999999999988755    23334444444443222111


Q ss_pred             HHHHhccCChHHHHHHH--hcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHH
Q 014817          318 AEFAEHALTVPLLVKTI--LKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLL  395 (418)
Q Consensus       318 ~~i~~~~g~i~~Lv~~l--~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l  395 (418)
                      -..+.. .+|...+.+.  ...+..+...|+..|-++..++...++.+.++--+..|+..++.. +..++.+|..++..|
T Consensus       163 W~~~~~-~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~-n~~i~~~aial~nal  240 (713)
T KOG2999|consen  163 WESVSN-DFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVS-NQRIQTCAIALLNAL  240 (713)
T ss_pred             eeeccc-HHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHHHHHH
Confidence            111111 2233333333  335667789999999999998888899999999999999999888 888888888888777


Q ss_pred             Hhh
Q 014817          396 RDS  398 (418)
Q Consensus       396 ~~~  398 (418)
                      -..
T Consensus       241 ~~~  243 (713)
T KOG2999|consen  241 FRK  243 (713)
T ss_pred             Hhh
Confidence            654

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.76  E-value=4.5  Score=39.53  Aligned_cols=225  Identities=13%  Similarity=0.066  Sum_probs=126.6

Q ss_pred             HHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC-hhHHHhhcccCCchHHHH
Q 014817          123 SALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT-ETECMEIASDADKITSLS  201 (418)
Q Consensus       123 ~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv  201 (418)
                      +|++.|..+....+..-..+.+.||+..+++.|.....       .+.+.  .-...-... ..+.+......-.+    
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~-------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i----   69 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVD-------FALEE--NKNEEAGSGIPPEYKESSVDGYSI----   69 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHH-------HHHhc--ccccCCCCCCCCCccccccccccc----
Confidence            46777777776666667778899999999999965421       11110  000000000 00111111110000    


Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHh-cccch-hhhhHhhchhhhHHHHHHHhhcCC-CChhhhHHHHHHHHHHcccccc-HH
Q 014817          202 SLLFHSSIEVRVNSAALIEIVLA-GMRSQ-ELRAQISNLDEIFEGVIDILKNLS-SYPRGLKVGIKALFALCLVKQT-RY  277 (418)
Q Consensus       202 ~~L~~~~~~~~~~a~~~L~~L~~-~s~~~-~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~~a~~aL~~L~~~~~n-~~  277 (418)
                         .-..........+.|..+.. ..... ..|..+ .+...+..|..++++.. .-+.+-..|+..+..+-.++.. -.
T Consensus        70 ---~~~r~~llK~lLk~l~~~~~~~~~~~~~lrnl~-D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~  145 (379)
T PF06025_consen   70 ---SYQRQQLLKSLLKFLSHAMQHSGGFGDRLRNLI-DSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFS  145 (379)
T ss_pred             ---CHHHHHHHHHHHHHHHHHhccCCCccccccccc-chhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhH
Confidence               00001111222233333321 01111 222222 21235667777777652 1356777888889888887764 45


Q ss_pred             HHHHcCchHHHHHHhc-CC---CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCCh-------HHHHHHH
Q 014817          278 KAVAAGAAETLVDRLA-DF---DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISD-------RATEYAA  346 (418)
Q Consensus       278 ~i~~~G~v~~Lv~lL~-~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~-------~~~~~A~  346 (418)
                      .+.++|.++.+++.+. .+   +.++....-.+|..||-+..|.+.+.+. +.++.+++++.+.+.       +.-..--
T Consensus       146 ~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~~Gl~~~~~~-~~l~~~f~if~s~~~~~~l~~~d~a~~lG  224 (379)
T PF06025_consen  146 ILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLNNRGLEKVKSS-NPLDKLFEIFTSPDYVKALRRRDTASNLG  224 (379)
T ss_pred             HHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCHHHHHHHHhc-ChHHHHHHHhCCHHHHHHhcccchHHHHH
Confidence            5578999999999888 43   3455555667888999999999999995 999999998866211       1122222


Q ss_pred             HHHHHHhcCCHHHHHHHHh
Q 014817          347 GALAALCSASERCQRDAVS  365 (418)
Q Consensus       347 ~~L~~l~~~~~~~~~~~~~  365 (418)
                      ..+-.|.++.|..+..+++
T Consensus       225 ~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  225 NSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HHHHHHHccCHHHHHHHHH
Confidence            3445567777777776544

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=94.74  E-value=1.2  Score=42.21  Aligned_cols=153  Identities=19%  Similarity=0.150  Sum_probs=89.7

Q ss_pred             CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccc---hhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817          195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRS---QELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL  271 (418)
Q Consensus       195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~---~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~  271 (418)
                      ..+..+.+.++.|+.+-+..|+.++.-+   +..   .+....+..  ...|.|...+.++...+.++..++.+|.-++.
T Consensus        86 tL~~~~~k~lkkg~~~E~~lA~~~l~Ll---~ltlg~g~~~~ei~~--~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~f  160 (309)
T PF05004_consen   86 TLLDALLKSLKKGKSEEQALAARALALL---ALTLGAGEDSEEIFE--ELKPVLKRILTDSSASPKARAACLEALAICTF  160 (309)
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHH---hhhcCCCccHHHHHH--HHHHHHHHHHhCCccchHHHHHHHHHHHHHHH
Confidence            3477888888888877777777777777   333   123344433  47889999999874345666677767776654


Q ss_pred             cc-ccHHHHHH-cCchHHHHH--HhcC-C---------CcccHHHHHHHHHHHhc-CHh-HHHHHHhccCChHHHHHHHh
Q 014817          272 VK-QTRYKAVA-AGAAETLVD--RLAD-F---------DKCDAERALATVELLCR-IPA-GCAEFAEHALTVPLLVKTIL  335 (418)
Q Consensus       272 ~~-~n~~~i~~-~G~v~~Lv~--lL~~-~---------~~~~~~~a~~~L~~L~~-~~~-~~~~i~~~~g~i~~Lv~~l~  335 (418)
                      .. ..-..+.+ ...+..+..  .+.. +         ++.+...|+..-..|.. .+. ......+  ..++.|+.+|.
T Consensus       161 v~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~--~~~~~l~~lL~  238 (309)
T PF05004_consen  161 VGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLE--EALPALSELLD  238 (309)
T ss_pred             hhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHH--HHHHHHHHHhc
Confidence            21 11111110 122332211  1221 1         23466666655555552 222 2223333  46999999999


Q ss_pred             cCChHHHHHHHHHHHHHhc
Q 014817          336 KISDRATEYAAGALAALCS  354 (418)
Q Consensus       336 ~~~~~~~~~A~~~L~~l~~  354 (418)
                      +.+..+|..|-.+|.-|.-
T Consensus       239 s~d~~VRiAAGEaiAll~E  257 (309)
T PF05004_consen  239 SDDVDVRIAAGEAIALLYE  257 (309)
T ss_pred             CCCHHHHHHHHHHHHHHHH
Confidence            9999999888877766543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.74  E-value=0.02  Score=52.24  Aligned_cols=42  Identities=29%  Similarity=0.601  Sum_probs=36.3

Q ss_pred             ccCcCccccccC---CeecCCCCcccHHHHHHHHHcC--CCCCCCCC
Q 014817           18 FRCPISLELMCD---PVTVCTGQTYDRPSIESWVATG--NTTCPVTR   59 (418)
Q Consensus        18 ~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~--~~~cp~~~   59 (418)
                      |.||+.++.-.|   ||+++|||..-+.++...-++|  ...||.|-
T Consensus       337 FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP  383 (396)
T COG5109         337 FICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCP  383 (396)
T ss_pred             eeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCC
Confidence            799999998876   8999999999999999887766  45699984

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=94.63  E-value=0.17  Score=46.19  Aligned_cols=96  Identities=21%  Similarity=0.250  Sum_probs=80.6

Q ss_pred             hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHH
Q 014817          121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSL  200 (418)
Q Consensus       121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L  200 (418)
                      ..-|++.|.-++--++..|..+.+..++..|+++|....      .+.++..++.+|..+..+...|.+.+-+.+|+..+
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~------~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v  181 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSN------PPAIQSACLDTLVCILLDSPENQRDFEELNGLSTV  181 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCC------CchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHH
Confidence            455889999999889999999999999999999995543      47888889998887767777889999999999999


Q ss_pred             HHHhcCC--CHHHHHHHHHHHHHH
Q 014817          201 SSLLFHS--SIEVRVNSAALIEIV  222 (418)
Q Consensus       201 v~~L~~~--~~~~~~~a~~~L~~L  222 (418)
                      +.++++.  +.+++...+..|.-.
T Consensus       182 ~~llk~~~~~~~~r~K~~EFL~fy  205 (257)
T PF08045_consen  182 CSLLKSKSTDRELRLKCIEFLYFY  205 (257)
T ss_pred             HHHHccccccHHHhHHHHHHHHHH
Confidence            9999875  578888777777665

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.63  E-value=0.79  Score=39.79  Aligned_cols=117  Identities=18%  Similarity=0.127  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhh-hhHHhhcChHHHHHHHhhcccccc--cCCChhHHHHHHHHH
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKN-RSLISSHNVRAILSQVFFTNINVK--TASSPELAHESLALL  177 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~-~~~i~~~g~i~~Lv~lL~~~~~~~--~~~~~~v~~~a~~~L  177 (418)
                      ......+++.+++....    .+.+..|+...+..+.. -..|++.||+..|+.+|..-....  ...+.+.+..++.+|
T Consensus        65 ~~~p~~~i~~L~~~~~~----~~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Cl  140 (187)
T PF06371_consen   65 KSSPEWYIKKLKSRPST----SKILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCL  140 (187)
T ss_dssp             CHHHHHHHHHHTTT--H----HHHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHccCcc----HHHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHH
Confidence            35567788999876432    25677777666654433 445778999999999995432110  012456788888888


Q ss_pred             hcCCCChhHHHhhc-ccCCchHHHHHHhcCCCHHHHHHHHHHHHHH
Q 014817          178 VMFPLTETECMEIA-SDADKITSLSSLLFHSSIEVRVNSAALIEIV  222 (418)
Q Consensus       178 ~~l~~~~~~~~~~i-~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L  222 (418)
                      ..+..+. .+...+ ...+++..|+..|.+.+..++..++.+|..+
T Consensus       141 kal~n~~-~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~l  185 (187)
T PF06371_consen  141 KALMNTK-YGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAAL  185 (187)
T ss_dssp             HHHTSSH-HHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred             HHHHccH-HHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            8877666 444444 4689999999999999999999999998877

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.61  E-value=0.026  Score=53.50  Aligned_cols=49  Identities=18%  Similarity=0.421  Sum_probs=39.7

Q ss_pred             CCcccCcCccccccCCe-----e---cCCCCcccHHHHHHHHHc-C-----CCCCCCCCCCCC
Q 014817           15 PYHFRCPISLELMCDPV-----T---VCTGQTYDRPSIESWVAT-G-----NTTCPVTRSPLT   63 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~dPv-----~---~~~g~~~~r~~i~~~~~~-~-----~~~cp~~~~~l~   63 (418)
                      ..+..|=||++...+++     .   .+|.|+||..||.+|-.. .     ...||.|+....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            44789999999999998     3   469999999999999742 2     356999997754

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.59  E-value=2.7  Score=36.27  Aligned_cols=93  Identities=16%  Similarity=0.105  Sum_probs=71.8

Q ss_pred             CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHH
Q 014817          208 SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAET  287 (418)
Q Consensus       208 ~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~  287 (418)
                      ++.+|.+++.++..|+  ...+    .+.  ...++.+...|+++  ++.+++.|+.+|.+|...+-.+.+   ...+..
T Consensus         1 ~~~vR~n~i~~l~DL~--~r~~----~~v--e~~~~~l~~~L~D~--~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~   67 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLC--IRYP----NLV--EPYLPNLYKCLRDE--DPLVRKTALLVLSHLILEDMIKVK---GQLFSR   67 (178)
T ss_pred             CHHHHHHHHHHHHHHH--HhCc----HHH--HhHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHcCceeeh---hhhhHH
Confidence            4678999999999994  3332    222  34788999999999  899999999999999876543332   123477


Q ss_pred             HHHHhcCCCcccHHHHHHHHHHHhcC
Q 014817          288 LVDRLADFDKCDAERALATVELLCRI  313 (418)
Q Consensus       288 Lv~lL~~~~~~~~~~a~~~L~~L~~~  313 (418)
                      ++.++.+.+++++..|..++..+...
T Consensus        68 ~l~~l~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   68 ILKLLVDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHHHHcCCCHHHHHHHHHHHHHHHHh
Confidence            78888888999999999999988854

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.57  E-value=0.097  Score=41.64  Aligned_cols=81  Identities=20%  Similarity=0.166  Sum_probs=60.5

Q ss_pred             hhhhHhhc-hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc-HHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817          230 ELRAQISN-LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT-RYKAVAAGAAETLVDRLADFDKCDAERALATV  307 (418)
Q Consensus       230 ~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n-~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L  307 (418)
                      +|...+-. .-.++..|+++|.... ++.+...|+.=|..++...++ +..+-+.|+=..++++|.+++++++..|+.++
T Consensus        32 ENa~kf~~~~~~llk~L~~lL~~s~-d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~av  110 (119)
T PF11698_consen   32 ENADKFEENNFELLKKLIKLLDKSD-DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAV  110 (119)
T ss_dssp             HHSGGGSSGGGHHHHHHHHHH-SHH-HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHH
T ss_pred             HHHHHHHHcccHHHHHHHHHHccCC-CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHH
Confidence            44444533 2348899999996553 788888999999999977554 44445679999999999999999999999998


Q ss_pred             HHHh
Q 014817          308 ELLC  311 (418)
Q Consensus       308 ~~L~  311 (418)
                      ..|.
T Consensus       111 Qklm  114 (119)
T PF11698_consen  111 QKLM  114 (119)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7664

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK14707 hypothetical protein; Provisional

Probab=94.56  E-value=8.7  Score=44.81  Aligned_cols=282  Identities=13%  Similarity=-0.004  Sum_probs=165.0

Q ss_pred             CCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHH
Q 014817           96 KQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLA  175 (418)
Q Consensus        96 ~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~  175 (418)
                      ....+...|..+++-++....+. .+..|+..|.......+..+. -.+..++...+.-|+.=.      +..+...|+.
T Consensus       199 ~~~~~~q~ia~~lNa~sKWp~~~-~c~~aa~~la~~l~~~~~l~~-~~~~q~va~~lN~lsKwp------~~~~C~~a~~  270 (2710)
T PRK14707        199 RSAMDAQGVATVLNALCKWPDTP-DCGNAVSALAERLADESRLRN-ELKPQELGNALNALSKWA------DTPVCAAAAS  270 (2710)
T ss_pred             hcccchHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHcCcHHHHH-hCChHHHHHHHHHHhcCC------CchHHHHHHH
Confidence            34445556777777776543222 356788888866555444443 334556777777775432      3456777777


Q ss_pred             HHh-cCCCChhHHHhhcccCCchHHHHHHhcC-CC-HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC
Q 014817          176 LLV-MFPLTETECMEIASDADKITSLSSLLFH-SS-IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL  252 (418)
Q Consensus       176 ~L~-~l~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~-~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~  252 (418)
                      +|. .++.+. ..++.+- +-.+...+.-|+. .+ ...+..+..+-..|   ..+.+.+..+-. .+ +.-.++-|..=
T Consensus       271 ~lA~rl~~~~-~l~~al~-~q~vanalNalSKwpd~~vc~~Aa~~la~rl---~~d~~l~~~~~~-~~-~~~~LNalsKW  343 (2710)
T PRK14707        271 ALAERLVDDP-GLRKALD-PINVTQALNALSKWADLPVCAEAAIALAERL---ADDPELCKALNA-RG-LSTALNALSKW  343 (2710)
T ss_pred             HHHHHHhhhH-HHHHhcC-HHHHHHHHhhhhcCCCchHHHHHHHHHHHHH---hccHhhhhccch-HH-HHHHHHHhhcC
Confidence            666 454333 5555553 3334444455543 33 44444455555555   666666666632 33 34444444432


Q ss_pred             CCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc-CCCcccHHHHHHHH-HHHhcCHhHHHHHHhccCChHHH
Q 014817          253 SSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA-DFDKCDAERALATV-ELLCRIPAGCAEFAEHALTVPLL  330 (418)
Q Consensus       253 ~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L-~~L~~~~~~~~~i~~~~g~i~~L  330 (418)
                      .++......|...-..|+...+-+..+- .-++..++.-|+ =++......++..| ..|..+.+-++.+-.  .+|..+
T Consensus       344 pd~~~C~~Aa~~LA~rl~~d~~l~~~l~-~q~~a~~lNalsKWp~~~~c~~aa~~LA~~l~~d~~l~~~~~~--Q~van~  420 (2710)
T PRK14707        344 PDNPVCAAAVSALAERLVADPELRKDLE-PQGVSSVLNALSKWPDTPVCAAAASALAEHVVDDLELRKGLDP--QGVSNA  420 (2710)
T ss_pred             CCchhHHHHHHHHHHHhccCHhhhcccc-hhHHHHHHhhhhcCCCchHHHHHHHHHHHHhccChhhhhhcch--hhHHHH
Confidence            2145566666666667777777666654 334555566554 34555566666666 567777788887765  568888


Q ss_pred             HHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHH-HHHHHHHHHH
Q 014817          331 VKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKR-KAQLLLKLLR  396 (418)
Q Consensus       331 v~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~-~A~~~L~~l~  396 (418)
                      ++-|+. .+..+...|+..|..-...+.+.++.+--.++... ++.++...+..... .|..+...|.
T Consensus       421 lnalsKWPd~~~C~~aa~~lA~~la~d~~l~~~~~p~~va~~-LnalSKWPd~p~c~~aa~~La~~l~  487 (2710)
T PRK14707        421 LNALAKWPDLPICGQAVSALAGRLAHDTELCKALDPINVTQA-LDALSKWPDTPICGQTASALAARLA  487 (2710)
T ss_pred             HHHhhcCCcchhHHHHHHHHHHHHhccHHHHhhcChHHHHHH-HHHhhcCCCChhHHHHHHHHHHHhc
Confidence            888877 67777777777776655558888876655555444 47777765555544 4444444444

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.54  E-value=0.26  Score=35.61  Aligned_cols=66  Identities=12%  Similarity=0.006  Sum_probs=57.2

Q ss_pred             hhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC-CcccHHHHHHHHHHHhcCHhHHHHHHhc
Q 014817          258 GLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF-DKCDAERALATVELLCRIPAGCAEFAEH  323 (418)
Q Consensus       258 ~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~  323 (418)
                      -++.|++|+.++++.+....-+.+.++++.++++..+. .-.++--|..+|..++...++.+.+.+.
T Consensus         3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~   69 (73)
T PF14668_consen    3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDEL   69 (73)
T ss_pred             HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHc
Confidence            46789999999999888877777889999999999754 4678889999999999999999988763

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.51  E-value=0.027  Score=54.63  Aligned_cols=51  Identities=22%  Similarity=0.440  Sum_probs=37.8

Q ss_pred             CCCcccCcCccccc-----------------cCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817           14 IPYHFRCPISLELM-----------------CDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~-----------------~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      +...--|+||+...                 ++=+++||.|.|-+.|++.|.+.-.-.||.|+.++++
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            44445799997642                 1233559999999999999998423479999998864

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=94.29  E-value=0.011  Score=60.29  Aligned_cols=45  Identities=27%  Similarity=0.556  Sum_probs=29.8

Q ss_pred             cCcCccccccCCeec---CCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817           19 RCPISLELMCDPVTV---CTGQTYDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus        19 ~Cpi~~~~~~dPv~~---~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      .||+|..-+.|-.+.   .|+|-||..||..|-.. ..+||+|+..|..
T Consensus       125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence            566666666665544   47777777777777653 5678888776653

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.22  E-value=2  Score=37.15  Aligned_cols=109  Identities=11%  Similarity=0.140  Sum_probs=75.4

Q ss_pred             hhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhh-hHHHH
Q 014817          167 PELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE-IFEGV  245 (418)
Q Consensus       167 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g-~i~~L  245 (418)
                      +.++.+++.+|+-|+..-+.    ++ ...++.+...|+++++.+|..|+.+|..|.   ..+-.  .+   .| .+..+
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~----~v-e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li---~~d~i--k~---k~~l~~~~   68 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPN----LV-EPYLPNLYKCLRDEDPLVRKTALLVLSHLI---LEDMI--KV---KGQLFSRI   68 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcH----HH-HhHHHHHHHHHCCCCHHHHHHHHHHHHHHH---HcCce--ee---hhhhhHHH
Confidence            67888888888866543311    11 235889999999999999999999999994   33221  11   23 34777


Q ss_pred             HHHhhcCCCChhhhHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcC
Q 014817          246 IDILKNLSSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLAD  294 (418)
Q Consensus       246 v~lL~~~~~~~~~~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~  294 (418)
                      +.++.+.  +++++..|...+..+... .++..    ...++.++..|..
T Consensus        69 l~~l~D~--~~~Ir~~A~~~~~e~~~~~~~~~i----~~~~~e~i~~l~~  112 (178)
T PF12717_consen   69 LKLLVDE--NPEIRSLARSFFSELLKKRNPNII----YNNFPELISSLNN  112 (178)
T ss_pred             HHHHcCC--CHHHHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHhC
Confidence            7888777  899999999999999876 33322    2245555555554

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=94.11  E-value=0.53  Score=43.64  Aligned_cols=191  Identities=16%  Similarity=0.075  Sum_probs=117.1

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhh-hHHHHHHHhhcCC--CChhhhHHHHHHHHHHcccc
Q 014817          197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE-IFEGVIDILKNLS--SYPRGLKVGIKALFALCLVK  273 (418)
Q Consensus       197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g-~i~~Lv~lL~~~~--~~~~~~~~a~~aL~~L~~~~  273 (418)
                      +..+.+++.+-+.+.+--+..+++-+   ..+......+....+ ....+..++....  ..+..+--+++++.|+..+.
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~---~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~  141 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLA---ALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHP  141 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHH---CCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHH---HhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCC
Confidence            34455555555555566677777777   666666555543322 3455555555442  25667788999999999999


Q ss_pred             ccHHHHHHcC--chHHHHHHhcCC----CcccHHHHHHHHHHHhcCHhHHHH--HHhccCChHHHHHHHhc--CChHHHH
Q 014817          274 QTRYKAVAAG--AAETLVDRLADF----DKCDAERALATVELLCRIPAGCAE--FAEHALTVPLLVKTILK--ISDRATE  343 (418)
Q Consensus       274 ~n~~~i~~~G--~v~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~~~~~~--i~~~~g~i~~Lv~~l~~--~~~~~~~  343 (418)
                      ..+..+.+..  .+-..+..+...    +..++..++.++.|++..-.....  -.. ...+..+++.+..  .+++..-
T Consensus       142 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~-~~ll~~i~~~~~~~~~d~Ea~~  220 (268)
T PF08324_consen  142 PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ-SELLSSIIEVLSREESDEEALY  220 (268)
T ss_dssp             CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH-HHHHHHHHHHCHCCHTSHHHHH
T ss_pred             ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHhccccCCHHHHH
Confidence            9988887643  333333333333    566777788888898832111110  000 0123445553333  6888888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHH
Q 014817          344 YAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLL  391 (418)
Q Consensus       344 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~  391 (418)
                      .++.+|.++...++.........|+-..+.........++.++.+..+
T Consensus       221 R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei  268 (268)
T PF08324_consen  221 RLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI  268 (268)
T ss_dssp             HHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence            999999999986666666655567777766666555578888877653

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.05  E-value=3.7  Score=42.90  Aligned_cols=247  Identities=13%  Similarity=0.118  Sum_probs=128.1

Q ss_pred             hHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh--------HHHhhcc
Q 014817          121 RLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET--------ECMEIAS  192 (418)
Q Consensus       121 ~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~--------~~~~~i~  192 (418)
                      ..+|++++..+...+.  | .+.  -++..|--+++++       ....+-.|..+|..++....        +.-..|.
T Consensus       262 ~~EaArai~~l~~~~~--r-~l~--pavs~Lq~flssp-------~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lIt  329 (865)
T KOG1078|consen  262 IYEAARAIVSLPNTNS--R-ELA--PAVSVLQLFLSSP-------KVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLIT  329 (865)
T ss_pred             HHHHHHHHhhccccCH--h-hcc--hHHHHHHHHhcCc-------HHHHHHHHHHHHHHHHHhCCccccccchhHHhhhc
Confidence            3566666666643221  1 122  1666676777766       46678888888887764331        1111222


Q ss_pred             c---CCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh------------chhhhHHHHHHHhhcCCCChh
Q 014817          193 D---ADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS------------NLDEIFEGVIDILKNLSSYPR  257 (418)
Q Consensus       193 ~---~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~------------~~~g~i~~Lv~lL~~~~~~~~  257 (418)
                      +   .=+-..+..+|+.|+.+.......-+.++.+ -..++++..+.            ...+.+..|.++|++.. .-+
T Consensus       330 d~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~-disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eG-g~e  407 (865)
T KOG1078|consen  330 DSNRSIATLAITTLLKTGTESSVDRLMKQISSFVS-DISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEG-GFE  407 (865)
T ss_pred             ccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHH-hccccceEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhcc-Cch
Confidence            1   1133445566666766555555555555532 22344443332            11234444555555432 344


Q ss_pred             hhHHHHHHHHHHcc-ccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc
Q 014817          258 GLKVGIKALFALCL-VKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK  336 (418)
Q Consensus       258 ~~~~a~~aL~~L~~-~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~  336 (418)
                      -+.+...++..+.. +.+.|..     ++..|...+.+  -+....+..+|..|....  -..... ..-+..+.+.+--
T Consensus       408 ~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIED--ce~~~i~~rILhlLG~Eg--P~a~~P-skyir~iyNRviL  477 (865)
T KOG1078|consen  408 FKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIED--CEFTQIAVRILHLLGKEG--PKAPNP-SKYIRFIYNRVIL  477 (865)
T ss_pred             HHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHh--ccchHHHHHHHHHHhccC--CCCCCc-chhhHHHhhhhhh
Confidence            45555555554443 2333322     33344444433  233445555555554210  000001 1223334444444


Q ss_pred             CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       337 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      .+..++..|+.+|..+..+++..+..     +.-.|.+.+... ++.+|+.|...|+++..
T Consensus       478 En~ivRaaAv~alaKfg~~~~~l~~s-----I~vllkRc~~D~-DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  478 ENAIVRAAAVSALAKFGAQDVVLLPS-----ILVLLKRCLNDS-DDEVRDRATFYLKNLEE  532 (865)
T ss_pred             hhhhhHHHHHHHHHHHhcCCCCcccc-----HHHHHHHHhcCc-hHHHHHHHHHHHHHhhh
Confidence            78889999999999988655443332     344444555444 99999999999999994

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=94.02  E-value=0.034  Score=51.24  Aligned_cols=50  Identities=20%  Similarity=0.257  Sum_probs=37.2

Q ss_pred             CcccCcCccccccCCe----ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014817           16 YHFRCPISLELMCDPV----TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT   66 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~   66 (418)
                      +++ ||+|.+.|.-.=    --+||+..||-|.....+.-++.||.|+..+.+.+
T Consensus        14 ed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          14 EDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             ccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            344 999999885332    34699999999977765544788999998876544

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=93.96  E-value=6  Score=42.06  Aligned_cols=192  Identities=15%  Similarity=0.053  Sum_probs=126.7

Q ss_pred             hhHHHHHHHHHhcCCCChhHHHhhcc--cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHH
Q 014817          167 PELAHESLALLVMFPLTETECMEIAS--DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEG  244 (418)
Q Consensus       167 ~~v~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~  244 (418)
                      +-++-.|+.++...+.     +..+.  .++++..|..+....+.++......+|...+  ..+.+..... . ..+.|.
T Consensus       505 ~~~ki~a~~~~~~~~~-----~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv--~~dpef~as~-~-skI~P~  575 (1005)
T KOG2274|consen  505 PPVKISAVRAFCGYCK-----VKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVV--KLDPEFAASM-E-SKICPL  575 (1005)
T ss_pred             CchhHHHHHHHHhccC-----ceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHh--ccChhhhhhh-h-cchhHH
Confidence            4456666666554441     11111  4677888888888788888888888888885  4555554444 3 347777


Q ss_pred             HHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCC----cccHHHHHHHHHHHhcCH--hHHH
Q 014817          245 VIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFD----KCDAERALATVELLCRIP--AGCA  318 (418)
Q Consensus       245 Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~----~~~~~~a~~~L~~L~~~~--~~~~  318 (418)
                      ++.+.-..+.+|.+...+-.++..|+....|...+.+. .+|.+++.|..+.    ......++.+|..+.++.  .--.
T Consensus       576 ~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e~-~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~  654 (1005)
T KOG2274|consen  576 TINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQER-LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPN  654 (1005)
T ss_pred             HHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHHH-HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccH
Confidence            77776655447888888888888888766666666555 7999999998654    566777888887666432  2223


Q ss_pred             HHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHH
Q 014817          319 EFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLT  370 (418)
Q Consensus       319 ~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~  370 (418)
                      .+..  -+.|++.++..+ ++...-+++-.+|..+-..+.+....-..+++..
T Consensus       655 ~l~~--~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~eq~~t~~~e~g~~  705 (1005)
T KOG2274|consen  655 LLIC--YAFPAVAKITLHSDDHETLQNATECLRALISVTLEQLLTWHDEPGHN  705 (1005)
T ss_pred             HHHH--HHhHHhHhheeecCChHHHHhHHHHHHHHHhcCHHHHHhhccCCCcc
Confidence            3333  357888887755 6666778888888887664555444334444433

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.89  E-value=0.015  Score=38.46  Aligned_cols=44  Identities=23%  Similarity=0.352  Sum_probs=35.8

Q ss_pred             cCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCC
Q 014817           19 RCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPL   62 (418)
Q Consensus        19 ~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l   62 (418)
                      -|.||-+--.|.|+--|||. .|..|=.+.|...+..||.|+.++
T Consensus         9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi   53 (62)
T KOG4172|consen    9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPI   53 (62)
T ss_pred             ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHH
Confidence            49999998888888899986 467777776665788999998764

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=93.85  E-value=2  Score=42.32  Aligned_cols=127  Identities=17%  Similarity=0.193  Sum_probs=96.2

Q ss_pred             HHHHhhcCCCChhhhHHHHHHHHHHccccc----cHHHHHHcCchHHHHHHhcCC-------CcccHHHHHHHHHHHhcC
Q 014817          245 VIDILKNLSSYPRGLKVGIKALFALCLVKQ----TRYKAVAAGAAETLVDRLADF-------DKCDAERALATVELLCRI  313 (418)
Q Consensus       245 Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~----n~~~i~~~G~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~  313 (418)
                      +..+++..  +.+.+-+|+-....++.+++    ||+.+.++=+.+.+-++|...       +.-.+.-++.+|...|+.
T Consensus        16 ~~~L~~~k--~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~   93 (698)
T KOG2611|consen   16 CLKLLKGK--RDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRV   93 (698)
T ss_pred             HHHHhccc--ChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCC
Confidence            55566666  67788888888888988765    788899999999999999743       123456678888888888


Q ss_pred             HhH--HHHHHhccCChHHHHHHHhc-CChH------HHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHh
Q 014817          314 PAG--CAEFAEHALTVPLLVKTILK-ISDR------ATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQ  377 (418)
Q Consensus       314 ~~~--~~~i~~~~g~i~~Lv~~l~~-~~~~------~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~  377 (418)
                      ++-  ...++.   .||.|.+.+.. .+++      +-+.+..+|..++.. +.-.+..+..|+++.+.+.-.
T Consensus        94 pElAsh~~~v~---~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~-e~G~~~Lia~G~~~~~~Q~y~  162 (698)
T KOG2611|consen   94 PELASHEEMVS---RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA-EAGLMTLIASGGLRVIAQMYE  162 (698)
T ss_pred             hhhccCHHHHH---hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC-CchhHHHHhcCchHHHHHHHh
Confidence            764  345555   38999999976 3333      778999999999884 566777889999999975543

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=93.82  E-value=0.34  Score=40.97  Aligned_cols=143  Identities=18%  Similarity=0.151  Sum_probs=96.5

Q ss_pred             hHHHHHHhc--CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-
Q 014817          197 ITSLSSLLF--HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-  273 (418)
Q Consensus       197 i~~Lv~~L~--~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-  273 (418)
                      +..++..|.  ..++++|..++-++..+   -  +..++....  -+-+.+-..+..+  +.+....+..++..|-... 
T Consensus         5 l~~lL~~L~~~~~~~~~r~~a~v~l~k~---l--~~~~~~~~~--~~~~~i~~~~~~~--~~d~~i~~~~~l~~lfp~~~   75 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEEVRSHALVILSKL---L--DAAREEFKE--KISDFIESLLDEG--EMDSLIIAFSALTALFPGPP   75 (157)
T ss_dssp             CCHHHHHHHCTTTSCCHHHHHHHHHHHH---H--HHHHHHHHH--HHHHHHHHHHCCH--HCCHHHHHHHHHHHHCTTTH
T ss_pred             HHHHHHHhcccCCCHhHHHHHHHHHHHH---H--HHhHHHHHH--HHHHHHHHHHccc--cchhHHHHHHHHHHHhCCCH
Confidence            455556554  35788888888888887   3  444444421  1233333444444  4567788888888887654 


Q ss_pred             ccHHHH-HHcCchHHHHHHhc--CCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChH-HHHHHHHH
Q 014817          274 QTRYKA-VAAGAAETLVDRLA--DFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDR-ATEYAAGA  348 (418)
Q Consensus       274 ~n~~~i-~~~G~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~-~~~~A~~~  348 (418)
                      +-...+ ...|.++.++.++.  ..+...+..++.+|..-|.+...|..+..  .+++-|-+..+. .++. ++..|+-+
T Consensus        76 dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~  153 (157)
T PF11701_consen   76 DVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVG  153 (157)
T ss_dssp             HHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHH
T ss_pred             HHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHH
Confidence            344444 46899999999998  66777888899999988888888888887  458888887754 4455 67776665


Q ss_pred             HH
Q 014817          349 LA  350 (418)
Q Consensus       349 L~  350 (418)
                      |.
T Consensus       154 L~  155 (157)
T PF11701_consen  154 LC  155 (157)
T ss_dssp             HH
T ss_pred             Hh
Confidence            54

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.81  E-value=1.5  Score=47.15  Aligned_cols=258  Identities=15%  Similarity=0.085  Sum_probs=154.4

Q ss_pred             HHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHh
Q 014817          125 LRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLL  204 (418)
Q Consensus       125 l~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L  204 (418)
                      -..|..+.+++.+|...+.++.++..++.++-++         +-+-..+.++..|...+..   + +.+.-+-.+|..|
T Consensus       663 wDcLisllKnnteNqklFreanGvklilpflind---------ehRSslLrivscLitvdpk---q-vhhqelmalVdtL  729 (2799)
T KOG1788|consen  663 WDCLISLLKNNTENQKLFREANGVKLILPFLIND---------EHRSSLLRIVSCLITVDPK---Q-VHHQELMALVDTL  729 (2799)
T ss_pred             HHHHHHHHhccchhhHHHHhhcCceEEEEeeech---------HHHHHHHHHHHHHhccCcc---c-ccHHHHHHHHHHH
Confidence            4567788899999999999999998888888443         3344444444444332211   1 1334567788888


Q ss_pred             cCCC------------HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc--------CCCChhhhHHHHH
Q 014817          205 FHSS------------IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN--------LSSYPRGLKVGIK  264 (418)
Q Consensus       205 ~~~~------------~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~--------~~~~~~~~~~a~~  264 (418)
                      ++|-            ........++++...  ..+...+..+++ .|+...|...|..        +.++.-+-..-..
T Consensus       730 ksgmvt~IsgeqyklhfsllcdlmGalwriv--gvngsaqrvFge-atGFslLlttLhtfqgftelhdesDlcvyiklfk  806 (2799)
T KOG1788|consen  730 KSGMVTRISGEQYKLHFSLLCDLMGALWRIV--GVNGSAQRVFGE-ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFK  806 (2799)
T ss_pred             HhcceeccchhHHHHHHHHHHHHHHHHHHHH--ccCchheeehhc-cccHHHHHHHHHHhccchhcCCchhhhhHHHHHH
Confidence            7742            234455667777774  455566777776 5667777666542        1002122222333


Q ss_pred             HHHHH---c--cccccHHHHHHcCchHHHHHHhcCC------------------------Cccc--HHHHHHHHHHHhc-
Q 014817          265 ALFAL---C--LVKQTRYKAVAAGAAETLVDRLADF------------------------DKCD--AERALATVELLCR-  312 (418)
Q Consensus       265 aL~~L---~--~~~~n~~~i~~~G~v~~Lv~lL~~~------------------------~~~~--~~~a~~~L~~L~~-  312 (418)
                      .|+.+   +  .+..|+..+-..=.-+.+..+|...                        .+.+  ...|+..+..+-. 
T Consensus       807 ilFrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfeledn  886 (2799)
T KOG1788|consen  807 ILFRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDN  886 (2799)
T ss_pred             HHHHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccc
Confidence            33332   2  3334544432111111222222210                        0111  1112222222211 


Q ss_pred             ----------CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHh--hCC
Q 014817          313 ----------IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQ--SDC  380 (418)
Q Consensus       313 ----------~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~--~~~  380 (418)
                                -...++.+.. +|++..++..+....+..|-.-+..+..+++.++-.....-..|.++.|++++.  ..+
T Consensus       887 ifavntPsGqfnpdk~~iyn-agavRvlirslLlnypK~qlefl~lleSlaRaspfnaelltS~gcvellleIiypflsg  965 (2799)
T KOG1788|consen  887 IFAVNTPSGQFNPDKQKIYN-AGAVRVLIRSLLLNYPKLQLEFLNLLESLARASPFNAELLTSAGCVELLLEIIYPFLSG  965 (2799)
T ss_pred             eeeeccCCCCcCchHhhhcc-cchhHHHHHHHHhhChHHHHHHHHHHHHHhhcCCCchhhhhcccHHHHHHHHhhhhhcC
Confidence                      1123566777 599999999998899999999999999999988888888888999999999984  233


Q ss_pred             CHHHHHHHHHHHHHHHhhC
Q 014817          381 TDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       381 ~~~~~~~A~~~L~~l~~~~  399 (418)
                      +...-..|.+++.+|.-+.
T Consensus       966 sspfLshalkIvemLgayr  984 (2799)
T KOG1788|consen  966 SSPFLSHALKIVEMLGAYR  984 (2799)
T ss_pred             CchHhhccHHHHHHHhhcc
Confidence            6666678888999888763

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=93.74  E-value=2.5  Score=41.95  Aligned_cols=127  Identities=16%  Similarity=0.121  Sum_probs=89.2

Q ss_pred             CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhh-------------hhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817          195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQEL-------------RAQISNLDEIFEGVIDILKNLSSYPRGLKV  261 (418)
Q Consensus       195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~-------------~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  261 (418)
                      ..+..|+.+|.+  +++...++..+.-|.  ...++.             |+++..  -.+|.|++-.+..  +.+.+.+
T Consensus       271 ~~~~~L~~lL~~--~~~g~~aA~~f~il~--~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~--~~~~k~~  342 (415)
T PF12460_consen  271 ELLDKLLELLSS--PELGQQAAKAFGILL--SDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEA--DDEIKSN  342 (415)
T ss_pred             HHHHHHHHHhCC--hhhHHHHHHHHhhHh--cCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhc--ChhhHHH
Confidence            346777787766  667788899999984  332433             455543  4788898888877  5668888


Q ss_pred             HHHHHHHHccccccHHHHHH-cCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHH
Q 014817          262 GIKALFALCLVKQTRYKAVA-AGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTI  334 (418)
Q Consensus       262 a~~aL~~L~~~~~n~~~i~~-~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l  334 (418)
                      -+.||.++-.+-....-+-+ ...+|.|++-|..++..++..++.+|..+....  -+.+.+|   +..||..|
T Consensus       343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~--~~~i~~h---l~sLI~~L  411 (415)
T PF12460_consen  343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA--PELISEH---LSSLIPRL  411 (415)
T ss_pred             HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC--HHHHHHH---HHHHHHHH
Confidence            99999999887653333333 458899999998888889999999999888544  3333333   44555444

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=93.71  E-value=5.2  Score=37.71  Aligned_cols=158  Identities=12%  Similarity=0.076  Sum_probs=101.2

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch-hhhhHhh------ch
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ-ELRAQIS------NL  238 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~-~~~~~i~------~~  238 (418)
                      ++.+++.|+.+|+.++.-+.+..     ...++.+...++.++.+++..|+.+|..+..  .+. +.-....      ..
T Consensus        40 ~~~vR~~al~cLGl~~Lld~~~a-----~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~--~~g~~~~~~~~~~~~~~~~  112 (298)
T PF12719_consen   40 DPAVRELALKCLGLCCLLDKELA-----KEHLPLFLQALQKDDEEVKITALKALFDLLL--THGIDIFDSESDNDESVDS  112 (298)
T ss_pred             CHHHHHHHHHHHHHHHHhChHHH-----HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH--HcCchhccchhccCccchH
Confidence            57999999999998776542211     1236778888888899999999999999963  222 1111111      11


Q ss_pred             hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC----CcccHHHHHHHHHHHhcCH
Q 014817          239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF----DKCDAERALATVELLCRIP  314 (418)
Q Consensus       239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~  314 (418)
                      ...+..+.+.+.+.  +++++..|+..+..|-.++....   ...++..|+-+--++    +..++.--...+-..+...
T Consensus       113 ~~l~~~l~~~l~~~--~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~s~  187 (298)
T PF12719_consen  113 KSLLKILTKFLDSE--NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYASSS  187 (298)
T ss_pred             hHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHcCC
Confidence            35788888899988  88999999999999876654333   233444555444333    2344444444556666544


Q ss_pred             hHHHHHHhccCChHHHHHHHhc
Q 014817          315 AGCAEFAEHALTVPLLVKTILK  336 (418)
Q Consensus       315 ~~~~~i~~~~g~i~~Lv~~l~~  336 (418)
                      ...+..+.. .+++.+-.+...
T Consensus       188 ~~~Q~~l~~-~f~~~l~~~~~~  208 (298)
T PF12719_consen  188 PENQERLAE-AFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHHHH-HHHHHHHHHHhC
Confidence            433444442 777887776655

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=93.63  E-value=0.9  Score=38.41  Aligned_cols=144  Identities=14%  Similarity=0.059  Sum_probs=90.3

Q ss_pred             HHHHHHhhc-CCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHH
Q 014817          243 EGVIDILKN-LSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEF  320 (418)
Q Consensus       243 ~~Lv~lL~~-~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i  320 (418)
                      ..++..|.. .. .++++..+.-++..+-  +..+....+ -.-+.+-.++..++..-...+..+|..|- .-++....+
T Consensus         6 ~~lL~~L~~~~~-~~~~r~~a~v~l~k~l--~~~~~~~~~-~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l   81 (157)
T PF11701_consen    6 DTLLTSLDMLRQ-PEEVRSHALVILSKLL--DAAREEFKE-KISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSEL   81 (157)
T ss_dssp             CHHHHHHHCTTT-SCCHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHH
T ss_pred             HHHHHHhcccCC-CHhHHHHHHHHHHHHH--HHhHHHHHH-HHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHH
Confidence            344554543 22 5778888888888772  223332211 12223333444444455667777887776 456777777


Q ss_pred             HhccCChHHHHHHHh--cCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHH-HHHHHHHHH
Q 014817          321 AEHALTVPLLVKTIL--KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDR-AKRKAQLLL  392 (418)
Q Consensus       321 ~~~~g~i~~Lv~~l~--~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~-~~~~A~~~L  392 (418)
                      ....|.++.++.++.  ..+...+..++.+|..-|. ++.+|..+.+. +++-|-.+.+...++. +|-.|+-.|
T Consensus        82 ~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~-~~~~L~~~~~~~~~~~~ir~~A~v~L  154 (157)
T PF11701_consen   82 FLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKN-YVSWLKELYKNSKDDSEIRVLAAVGL  154 (157)
T ss_dssp             CCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHH-CHHHHHHHTTTCC-HH-CHHHHHHHH
T ss_pred             HhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHH-HHHHHHHHHccccchHHHHHHHHHHH
Confidence            766799999999998  6888889999998777555 77777755544 4577777775553566 566555444

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=93.63  E-value=0.029  Score=52.90  Aligned_cols=47  Identities=21%  Similarity=0.337  Sum_probs=40.2

Q ss_pred             cCcCccccccCCeecCCCCcccHHHHHHHHH-cCCCCCCCCCCCCCCC
Q 014817           19 RCPISLELMCDPVTVCTGQTYDRPSIESWVA-TGNTTCPVTRSPLTDF   65 (418)
Q Consensus        19 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~-~~~~~cp~~~~~l~~~   65 (418)
                      .|-||.+-=+|=-+=+|||-.|-.|+..|.. .+..+||.|+..+..+
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt  418 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT  418 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence            7999999888877779999999999999985 4478899999776543

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.62  E-value=7  Score=37.44  Aligned_cols=206  Identities=14%  Similarity=-0.005  Sum_probs=143.0

Q ss_pred             HhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh---hhhHhhch-hhhHHHHHHHhhcCCCChhhhHHHH
Q 014817          188 MEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE---LRAQISNL-DEIFEGVIDILKNLSSYPRGLKVGI  263 (418)
Q Consensus       188 ~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~---~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~a~  263 (418)
                      ...+...|.+..|+..|..-+-+.|..++.+..++........   ....+... ..++   ..++.... +++..-.+.
T Consensus        69 a~Ei~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil---~~L~~gy~-~~dial~~g  144 (335)
T PF08569_consen   69 AQEIYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEIL---DILLRGYE-NPDIALNCG  144 (335)
T ss_dssp             HHHHHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHH---HHHHHGGG-STTTHHHHH
T ss_pred             HHHHHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHH---HHHHHHhc-CccccchHH
Confidence            3444566889999999999999999999999999953222221   12233332 2233   33333332 677888888


Q ss_pred             HHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHH-HhcCHhHHHHHHhc--cCChHHHHHHHhcCChH
Q 014817          264 KALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVEL-LCRIPAGCAEFAEH--ALTVPLLVKTILKISDR  340 (418)
Q Consensus       264 ~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~--~g~i~~Lv~~l~~~~~~  340 (418)
                      ..|+.....+.-...+.+...+..+.+.+..++=++...|..++.. |..+..........  ........++|.++|-.
T Consensus       145 ~mlRec~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYv  224 (335)
T PF08569_consen  145 DMLRECIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYV  224 (335)
T ss_dssp             HHHHHHTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHH
T ss_pred             HHHHHHHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeE
Confidence            8889988888888888898899999999998888888999999976 44666655555442  13556777778889999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHH----hcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          341 ATEYAAGALAALCSASERCQRDAV----SAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       341 ~~~~A~~~L~~l~~~~~~~~~~~~----~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      .+.+++..|..|-- ++.+...|.    +..-+..++.+|++. +..+|-.|--+.+.+..+.
T Consensus       225 tkrqslkLL~elll-dr~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  225 TKRQSLKLLGELLL-DRSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHHHHHHHHHH-SGGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH-S
T ss_pred             eehhhHHHHHHHHH-chhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHhCC
Confidence            99999999999876 333333222    234566777788777 9999999999988888774

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=93.50  E-value=0.018  Score=41.44  Aligned_cols=47  Identities=23%  Similarity=0.591  Sum_probs=22.4

Q ss_pred             cccCcCcccccc-C---Ceec----CCCCcccHHHHHHHHHc--CC--------CCCCCCCCCCC
Q 014817           17 HFRCPISLELMC-D---PVTV----CTGQTYDRPSIESWVAT--GN--------TTCPVTRSPLT   63 (418)
Q Consensus        17 ~~~Cpi~~~~~~-d---Pv~~----~~g~~~~r~~i~~~~~~--~~--------~~cp~~~~~l~   63 (418)
                      +..|+||...+. +   |.+.    .||++|=..|+.+||..  +.        ++||.|+.+++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            456999998754 2   4444    48999999999999863  11        24999988763

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=93.43  E-value=0.085  Score=41.98  Aligned_cols=70  Identities=13%  Similarity=0.062  Sum_probs=54.9

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHH
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIV  222 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L  222 (418)
                      .+..|+++|....      ++.+..-|+.=|+.+....+..|..+-+.|+-..+.++|.+++++++..|..++..+
T Consensus        44 llk~L~~lL~~s~------d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQkl  113 (119)
T PF11698_consen   44 LLKKLIKLLDKSD------DPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKL  113 (119)
T ss_dssp             HHHHHHHHH-SHH------HHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCC------CcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence            6788999995543      466666677777777766657788887889999999999999999999999999887

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.42  E-value=1.1  Score=41.03  Aligned_cols=96  Identities=19%  Similarity=0.171  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHh-cCHhHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHh
Q 014817          300 AERALATVELLC-RIPAGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQ  377 (418)
Q Consensus       300 ~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~  377 (418)
                      ...|+.+|.-++ -++..|..+..+ ..+..++.++.. ..+.++..++.+|..+...++.+.....+.+|+..+..++.
T Consensus       108 i~~aL~vLQGl~LLHp~Sr~lF~r~-~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  108 IALALRVLQGLCLLHPPSRKLFHRE-QNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHcCchHHHHHhhh-hhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            455778887777 577888888875 999999999944 67889999999999988888888889999999999999997


Q ss_pred             hC-CCHHHHHHHHHHHHHHH
Q 014817          378 SD-CTDRAKRKAQLLLKLLR  396 (418)
Q Consensus       378 ~~-~~~~~~~~A~~~L~~l~  396 (418)
                      +. .+..+|-+....|--.-
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             cccccHHHhHHHHHHHHHHH
Confidence            54 35677777666654433

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=93.41  E-value=0.077  Score=38.17  Aligned_cols=43  Identities=26%  Similarity=0.537  Sum_probs=33.4

Q ss_pred             cCcCccccccC-----Ceec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           19 RCPISLELMCD-----PVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        19 ~Cpi~~~~~~d-----Pv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      +||-|+-=| +     ||.- .|+|.|--.||.+|++. ...||.+++++.
T Consensus        33 ~C~eCq~~~-~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~   81 (88)
T COG5194          33 TCPECQFGM-TPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWV   81 (88)
T ss_pred             cCcccccCC-CCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeE
Confidence            577777654 3     3444 69999999999999986 678999988753

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=93.34  E-value=1.9  Score=45.58  Aligned_cols=221  Identities=12%  Similarity=0.083  Sum_probs=141.4

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHH
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLF-HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEG  244 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~  244 (418)
                      .+...-.|..++..++.....+...+  .-.+...+..+. +..+.++..|+.++...   ... .  .......+++..
T Consensus       463 ~P~Ll~Ra~~~i~~fs~~~~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~---~~~-~--vl~~~~p~ild~  534 (1005)
T KOG2274|consen  463 SPFLLLRAFLTISKFSSSTVINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGY---CKV-K--VLLSLQPMILDG  534 (1005)
T ss_pred             CHHHHHHHHHHHHHHHhhhccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhc---cCc-e--eccccchHHHHH
Confidence            34544466666654433211111111  112333344443 34567777888877777   422 1  111223678889


Q ss_pred             HHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc--CCCcccHHHHHHHHHHHhcCHhHHHHHHh
Q 014817          245 VIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA--DFDKCDAERALATVELLCRIPAGCAEFAE  322 (418)
Q Consensus       245 Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  322 (418)
                      |.++....  +.++......+|...+..+.......++-..|..+.+..  +.|+.+...+-.++..|+...++..-+.+
T Consensus       535 L~qlas~~--s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~e  612 (1005)
T KOG2274|consen  535 LLQLASKS--SDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQE  612 (1005)
T ss_pred             HHHHcccc--cHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchHH
Confidence            99998877  788999999999999988877777777778888877664  56787888888888888875555555544


Q ss_pred             ccCChHHHHHHHhcCC----hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          323 HALTVPLLVKTILKIS----DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       323 ~~g~i~~Lv~~l~~~~----~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                        -.||.++..|....    .....-|+.+|..+.++.|.-.....-.-+++++.+..-+..+...-.++...||-+-..
T Consensus       613 --~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  613 --RLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPAVAKITLHSDDHETLQNATECLRALISV  690 (1005)
T ss_pred             --HHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHHhHhheeecCChHHHHhHHHHHHHHHhc
Confidence              57999999997754    556777888888777743332333333446666666553333777777788877776654

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=93.21  E-value=7.1  Score=39.90  Aligned_cols=133  Identities=8%  Similarity=0.012  Sum_probs=82.8

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      .+...++...+++   .+.+.-|...+.+..+.-|...+     -++..++++..++       +..|+..|+..|-.++
T Consensus        23 ~~y~~il~~~kg~---~k~K~Laaq~I~kffk~FP~l~~-----~Ai~a~~DLcEDe-------d~~iR~~aik~lp~~c   87 (556)
T PF05918_consen   23 EDYKEILDGVKGS---PKEKRLAAQFIPKFFKHFPDLQE-----EAINAQLDLCEDE-------DVQIRKQAIKGLPQLC   87 (556)
T ss_dssp             HHHHHHHHGGGS----HHHHHHHHHHHHHHHCC-GGGHH-----HHHHHHHHHHT-S-------SHHHHHHHHHHGGGG-
T ss_pred             HHHHHHHHHccCC---HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcc-------cHHHHHHHHHhHHHHH
Confidence            3455566555543   33456788888888877666554     3678899999877       5789999999999999


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh---cCCCChhh
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK---NLSSYPRG  258 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~  258 (418)
                      .++.+....+     +..|+++|.+.++......-.+|..|.   ..+.        .+.+..|..-+.   .+  +..+
T Consensus        88 k~~~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll---~~d~--------k~tL~~lf~~i~~~~~~--de~~  149 (556)
T PF05918_consen   88 KDNPEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLL---KQDP--------KGTLTGLFSQIESSKSG--DEQV  149 (556)
T ss_dssp             -T--T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHH---HH-H--------HHHHHHHHHHHH---HS---HHH
T ss_pred             HhHHHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHH---hcCc--------HHHHHHHHHHHHhcccC--chHH
Confidence            8764444433     578899999988777777778888883   2221        234444444444   44  6778


Q ss_pred             hHHHHHHHH
Q 014817          259 LKVGIKALF  267 (418)
Q Consensus       259 ~~~a~~aL~  267 (418)
                      ++.++..|.
T Consensus       150 Re~~lkFl~  158 (556)
T PF05918_consen  150 RERALKFLR  158 (556)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888887774

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=93.17  E-value=0.94  Score=49.28  Aligned_cols=138  Identities=16%  Similarity=0.058  Sum_probs=100.1

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc---hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHH
Q 014817          202 SLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN---LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYK  278 (418)
Q Consensus       202 ~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~  278 (418)
                      .+|...++-+|......|.-|         +..++.   ..=.++.|+..|++.  +...+.+=...|..+|..-.-+. 
T Consensus       585 sLlsd~~~~Vkr~Lle~i~~L---------C~FFGk~ksND~iLshLiTfLNDk--Dw~LR~aFfdsI~gvsi~VG~rs-  652 (1431)
T KOG1240|consen  585 SLLSDSPPIVKRALLESIIPL---------CVFFGKEKSNDVILSHLITFLNDK--DWRLRGAFFDSIVGVSIFVGWRS-  652 (1431)
T ss_pred             HHHcCCchHHHHHHHHHHHHH---------HHHhhhcccccchHHHHHHHhcCc--cHHHHHHHHhhccceEEEEeeee-
Confidence            344445567777666666666         233331   123778899999988  78888777777776665543332 


Q ss_pred             HHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          279 AVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       279 i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                       ++.+.+|.|.+-|.++.+-+...|++.|..|+...--+...+.  ..+.....+|-..|.=++..++.+|..++.
T Consensus       653 -~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  653 -VSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVK--DILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             -HHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHHH--HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence             5778999999999998899999999999999987766555544  345666666777899999999999988776

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.14  E-value=0.056  Score=50.23  Aligned_cols=47  Identities=13%  Similarity=0.120  Sum_probs=39.9

Q ss_pred             CcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           16 YHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      ++=.||||-.---..|..||||.-|+.||.+++-+ .+.|-.|+....
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~  467 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI  467 (489)
T ss_pred             ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence            46789999887788889999999999999999875 778888876554

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=93.12  E-value=0.16  Score=29.91  Aligned_cols=29  Identities=14%  Similarity=0.210  Sum_probs=25.3

Q ss_pred             hHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817          241 IFEGVIDILKNLSSYPRGLKVGIKALFALCL  271 (418)
Q Consensus       241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~  271 (418)
                      ++|.++++++++  +++++..|+.+|.+++.
T Consensus         1 llp~l~~~l~D~--~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDP--SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-S--SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCC--CHHHHHHHHHHHHHHHh
Confidence            478999999998  89999999999999874

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.01  E-value=5.2  Score=38.31  Aligned_cols=144  Identities=15%  Similarity=0.141  Sum_probs=110.7

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh--chhhhHH
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS--NLDEIFE  243 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~--~~~g~i~  243 (418)
                      ++++.-.+..+|+.+...+ ..-+.+.....+..+.+..+.++-++...|..++..+.  ..+........  ....++.
T Consensus       136 ~~dial~~g~mlRec~k~e-~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~ll--t~hk~~~a~fl~~n~d~ff~  212 (335)
T PF08569_consen  136 NPDIALNCGDMLRECIKHE-SLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELL--TRHKKLVAEFLSNNYDRFFQ  212 (335)
T ss_dssp             STTTHHHHHHHHHHHTTSH-HHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHH--HSSHHHHHHHHHHTHHHHHH
T ss_pred             CccccchHHHHHHHHHhhH-HHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHH--hccHHHHHHHHHHHHHHHHH
Confidence            5778888888999988777 56667777888999999999999999999999999986  56655433332  2235777


Q ss_pred             HHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHH----HcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH
Q 014817          244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAV----AAGAAETLVDRLADFDKCDAERALATVELLCRIP  314 (418)
Q Consensus       244 ~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~----~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~  314 (418)
                      ....+|.++  +--++..++..|..|-....|..-|.    +..-+..++.+|++.+..++-.|-.+......++
T Consensus       213 ~~~~Ll~s~--NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp  285 (335)
T PF08569_consen  213 KYNKLLESS--NYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANP  285 (335)
T ss_dssp             HHHHHCT-S--SHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-S
T ss_pred             HHHHHccCC--CeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCC
Confidence            788889888  89999999999999998888766554    3456778888888888899999988887666544

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=92.92  E-value=0.031  Score=39.79  Aligned_cols=49  Identities=22%  Similarity=0.430  Sum_probs=35.7

Q ss_pred             CCcccCcCccccccC-Ceec-CCCCcccHHHHHHHHHc--CCCCCCCCCCCCC
Q 014817           15 PYHFRCPISLELMCD-PVTV-CTGQTYDRPSIESWVAT--GNTTCPVTRSPLT   63 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~d-Pv~~-~~g~~~~r~~i~~~~~~--~~~~cp~~~~~l~   63 (418)
                      |-+-.||-|+-+=-| |.++ -|.|.|-..||.+|+..  +...||.|++.+.
T Consensus        29 ~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   29 PFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             ccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            334467777665444 5555 69999999999999974  2456999998653

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=92.91  E-value=5.3  Score=39.64  Aligned_cols=187  Identities=16%  Similarity=0.123  Sum_probs=117.9

Q ss_pred             chHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHh-hcCCCChh----hhHHHHHHHHHH
Q 014817          196 KITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDIL-KNLSSYPR----GLKVGIKALFAL  269 (418)
Q Consensus       196 ~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~----~~~~a~~aL~~L  269 (418)
                      .+..++.+..+. ++..+..++..+..|+  -+..+. ..+   ...+..+...+ ...  ...    ..+...|....|
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~Lv--NK~~~~-~~l---~~~l~~~~~~~~~~~--~~~~~~~~~~~~~Wi~KaL  261 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLV--NKWPDD-DDL---DEFLDSLLQSISSSE--DSELRPQALEILIWITKAL  261 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHH--cCCCCh-hhH---HHHHHHHHhhhcccC--CcchhHHHHHHHHHHHHHH
Confidence            566666665444 5777777888888774  121110 011   23455555544 222  333    344444555555


Q ss_pred             ccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhH-------------HHHHHhccCChHHHHHHHh
Q 014817          270 CLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAG-------------CAEFAEHALTVPLLVKTIL  335 (418)
Q Consensus       270 ~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~-------------~~~i~~~~g~i~~Lv~~l~  335 (418)
                      .......    ....+..|+++|.+  +.+-..++..+..|... ++.             |+++..  -.+|.|++...
T Consensus       262 v~R~~~~----~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~  333 (415)
T PF12460_consen  262 VMRGHPL----ATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFK  333 (415)
T ss_pred             HHcCCch----HHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHh
Confidence            4332211    12246668888876  55667777777777765 332             566665  46888888888


Q ss_pred             cCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          336 KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       336 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ..+...+.+-+.+|.+|-.+-|.....-.-...+|.|++-|+.+ +..++..+..+|..+-...
T Consensus       334 ~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  334 EADDEIKSNYLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILEEA  396 (415)
T ss_pred             hcChhhHHHHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHcC
Confidence            77777888999999999886665444333356888888888767 8889999999999887764

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=92.89  E-value=5.2  Score=39.13  Aligned_cols=81  Identities=11%  Similarity=0.135  Sum_probs=67.3

Q ss_pred             HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhh-cccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHH
Q 014817          122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFF-TNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSL  200 (418)
Q Consensus       122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L  200 (418)
                      ..|+..+..+..+.|..-..|.++|.++.+++.+. ....    .+.++...--.+|.-|+.+. ...+.+.+.+.++.+
T Consensus       127 s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~----~s~e~l~~lP~~l~AicLN~-~Gl~~~~~~~~l~~~  201 (379)
T PF06025_consen  127 SLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGIL----PSSEVLTSLPNVLSAICLNN-RGLEKVKSSNPLDKL  201 (379)
T ss_pred             HHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCC----CcHHHHHHHHHHHhHHhcCH-HHHHHHHhcChHHHH
Confidence            56888888898888999999999999999999997 4321    25777777778888999998 788888899999999


Q ss_pred             HHHhcCC
Q 014817          201 SSLLFHS  207 (418)
Q Consensus       201 v~~L~~~  207 (418)
                      .+++.+.
T Consensus       202 f~if~s~  208 (379)
T PF06025_consen  202 FEIFTSP  208 (379)
T ss_pred             HHHhCCH
Confidence            9988764

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.83  E-value=0.066  Score=50.48  Aligned_cols=44  Identities=16%  Similarity=0.421  Sum_probs=32.3

Q ss_pred             ccCcCccccccCCe-----ecCCCCcccHHHHHHHHHcC-C-CCCCCCCCCC
Q 014817           18 FRCPISLELMCDPV-----TVCTGQTYDRPSIESWVATG-N-TTCPVTRSPL   62 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv-----~~~~g~~~~r~~i~~~~~~~-~-~~cp~~~~~l   62 (418)
                      -.|.||-+. ++-+     +-.|||+|.-.|+..||+.. . .+||+|+-.+
T Consensus         5 A~C~Ic~d~-~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~   55 (465)
T KOG0827|consen    5 AECHICIDG-RPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL   55 (465)
T ss_pred             ceeeEeccC-CccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence            459999554 3333     33599999999999999843 3 5899998443

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=92.60  E-value=0.052  Score=56.58  Aligned_cols=45  Identities=18%  Similarity=0.372  Sum_probs=37.7

Q ss_pred             ccCcCccccccCCeecCCCCcccHHHHHHHHHc-CCCCCCCCCCCCC
Q 014817           18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVAT-GNTTCPVTRSPLT   63 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~-~~~~cp~~~~~l~   63 (418)
                      +.|++|.+ ..+|+++.|||.||+.|+.+.+.. ....||.|+..+.
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~  500 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLK  500 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHH
Confidence            78999999 889999999999999999998764 3446999975543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=92.27  E-value=10  Score=38.45  Aligned_cols=264  Identities=12%  Similarity=0.007  Sum_probs=134.8

Q ss_pred             chhhhHHHHHHHHHhhhcChh-hhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCC
Q 014817          117 TYGSRLSALRRLRGLARDSDK-NRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDAD  195 (418)
Q Consensus       117 ~~~~~~~Al~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g  195 (418)
                      +...+..|+-++.....+... .+..++ ..++|.+.....++       .-.+...++++++.++.+.   ...|-..|
T Consensus       379 ~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~-------~l~vk~ttAwc~g~iad~v---a~~i~p~~  447 (858)
T COG5215         379 SWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDS-------CLWVKSTTAWCFGAIADHV---AMIISPCG  447 (858)
T ss_pred             hhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccc-------eeehhhHHHHHHHHHHHHH---HHhcCccc
Confidence            334455666666666654322 222233 55677777666643       3568888999988887433   34444445


Q ss_pred             chHHHHHHhcCC---CHHHHHHHHHHHHHHHhcccchhhh-h---Hhhc-hhhhHHHHHHHhhcCCCChhhhHHHHHHHH
Q 014817          196 KITSLSSLLFHS---SIEVRVNSAALIEIVLAGMRSQELR-A---QISN-LDEIFEGVIDILKNLSSYPRGLKVGIKALF  267 (418)
Q Consensus       196 ~i~~Lv~~L~~~---~~~~~~~a~~~L~~L~~~s~~~~~~-~---~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~  267 (418)
                      -++..+..+.-|   .+....+.+|...||+  ......- +   .+.. ....+..|++--+....+...+..+..+|.
T Consensus       448 Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv--~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLg  525 (858)
T COG5215         448 HLVLEVSASLIGLMDCPFRSINCSWRKENLV--DHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALG  525 (858)
T ss_pred             cccHHHHHHHhhhhccchHHhhhHHHHHhHH--HhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            555555544333   5667788899999994  2111111 1   1111 012444454443322113456777777777


Q ss_pred             HHccccc-cHHHHHHcCchHHHHH-----------HhcCCC----cccHHHHHHHHHHHhcCH-hHHHHHHhccCChHHH
Q 014817          268 ALCLVKQ-TRYKAVAAGAAETLVD-----------RLADFD----KCDAERALATVELLCRIP-AGCAEFAEHALTVPLL  330 (418)
Q Consensus       268 ~L~~~~~-n~~~i~~~G~v~~Lv~-----------lL~~~~----~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~L  330 (418)
                      .|-.... ....+ -+|.......           .+...|    .+++.+-+.+|..+.... ...+.. ++ ..+..+
T Consensus       526 tli~~~~d~V~~~-~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v-~D-~lm~Lf  602 (858)
T COG5215         526 TLILICPDAVSDI-LAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV-ED-QLMELF  602 (858)
T ss_pred             HHHhhcchhHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH-HH-HHHHHH
Confidence            7754322 22221 1222222222           222111    345555666666554211 111111 11 244566


Q ss_pred             HHHHhcC-ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          331 VKTILKI-SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       331 v~~l~~~-~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +++|.+. ...+-+....++.+++. +-+.+-+..-...+|.|.+.|... +..+.-.|..++..|++.
T Consensus       603 ~r~les~~~t~~~~dV~~aIsal~~-sl~e~Fe~y~~~fiPyl~~aln~~-d~~v~~~avglvgdlant  669 (858)
T COG5215         603 IRILESTKPTTAFGDVYTAISALST-SLEERFEQYASKFIPYLTRALNCT-DRFVLNSAVGLVGDLANT  669 (858)
T ss_pred             HHHHhccCCchhhhHHHHHHHHHHH-HHHHHHHHHHhhhhHHHHHHhcch-hHHHHHHHHHHHHHHHHH
Confidence            7777654 33445566666666666 444444455566778777777333 455555666666666654

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.23  E-value=17  Score=38.27  Aligned_cols=171  Identities=13%  Similarity=0.164  Sum_probs=110.4

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE  184 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~  184 (418)
                      ..|..+|.+....  .+++|.+.+-.+.......      ....|.+|+-..+.       |.+|++..---|...+..+
T Consensus        38 ~dL~~lLdSnkd~--~KleAmKRIia~iA~G~dv------S~~Fp~VVKNVask-------n~EVKkLVyvYLlrYAEeq  102 (968)
T KOG1060|consen   38 DDLKQLLDSNKDS--LKLEAMKRIIALIAKGKDV------SLLFPAVVKNVASK-------NIEVKKLVYVYLLRYAEEQ  102 (968)
T ss_pred             HHHHHHHhccccH--HHHHHHHHHHHHHhcCCcH------HHHHHHHHHHhhcc-------CHHHHHHHHHHHHHHhhcC
Confidence            3566677665432  4688888888665443332      23467788777766       5788877666555555433


Q ss_pred             hHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH
Q 014817          185 TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK  264 (418)
Q Consensus       185 ~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~  264 (418)
                       .+-..    -.|..+-+-|+..++.+|..|.++|..+         |..+.. .=++-++-+...+.  ++-+++.|+.
T Consensus       103 -pdLAL----LSIntfQk~L~DpN~LiRasALRvlSsI---------Rvp~Ia-PI~llAIk~~~~D~--s~yVRk~AA~  165 (968)
T KOG1060|consen  103 -PDLAL----LSINTFQKALKDPNQLIRASALRVLSSI---------RVPMIA-PIMLLAIKKAVTDP--SPYVRKTAAH  165 (968)
T ss_pred             -CCcee----eeHHHHHhhhcCCcHHHHHHHHHHHHhc---------chhhHH-HHHHHHHHHHhcCC--cHHHHHHHHH
Confidence             11111    2366777888999999998888877777         333322 21333344455555  7899999999


Q ss_pred             HHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817          265 ALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC  311 (418)
Q Consensus       265 aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~  311 (418)
                      ||-.|-+-+.+....    .+..+=.||.+.++.+.-.|+.+...+|
T Consensus       166 AIpKLYsLd~e~k~q----L~e~I~~LLaD~splVvgsAv~AF~evC  208 (968)
T KOG1060|consen  166 AIPKLYSLDPEQKDQ----LEEVIKKLLADRSPLVVGSAVMAFEEVC  208 (968)
T ss_pred             hhHHHhcCChhhHHH----HHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence            999997766543332    3445556777778888888888777766

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=92.18  E-value=2.4  Score=38.56  Aligned_cols=132  Identities=20%  Similarity=0.165  Sum_probs=85.4

Q ss_pred             CCCCCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHH
Q 014817           93 PTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHE  172 (418)
Q Consensus        93 ~~p~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~  172 (418)
                      -+|+.|+....+..+-..|.........+..|.-.|++.-.+  +         +|-.|++-|..+       +.-.+..
T Consensus       145 vdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~g~E--e---------aI~al~~~l~~~-------SalfrhE  206 (289)
T KOG0567|consen  145 VDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNIGTE--E---------AINALIDGLADD-------SALFRHE  206 (289)
T ss_pred             CCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhccCcH--H---------HHHHHHHhcccc-------hHHHHHH
Confidence            456666666667776666665544444566666666665321  1         344555555444       4567788


Q ss_pred             HHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC--CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh
Q 014817          173 SLALLVMFPLTETECMEIASDADKITSLSSLLFH--SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK  250 (418)
Q Consensus       173 a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~  250 (418)
                      ++.+++.|-.           .-+|+.|.+.|..  .++-+|..|+.+|..+   +.           ...++.|.+.+.
T Consensus       207 vAfVfGQl~s-----------~~ai~~L~k~L~d~~E~pMVRhEaAeALGaI---a~-----------e~~~~vL~e~~~  261 (289)
T KOG0567|consen  207 VAFVFGQLQS-----------PAAIPSLIKVLLDETEHPMVRHEAAEALGAI---AD-----------EDCVEVLKEYLG  261 (289)
T ss_pred             HHHHHhhccc-----------hhhhHHHHHHHHhhhcchHHHHHHHHHHHhh---cC-----------HHHHHHHHHHcC
Confidence            8888777643           2468888888865  4688999999999988   21           336677777777


Q ss_pred             cCCCChhhhHHHHHHHHHH
Q 014817          251 NLSSYPRGLKVGIKALFAL  269 (418)
Q Consensus       251 ~~~~~~~~~~~a~~aL~~L  269 (418)
                      +.  ++-+++.+..+|--+
T Consensus       262 D~--~~vv~esc~valdm~  278 (289)
T KOG0567|consen  262 DE--ERVVRESCEVALDML  278 (289)
T ss_pred             Cc--HHHHHHHHHHHHHHH
Confidence            76  566666666666544

>PRK14707 hypothetical protein; Provisional

Probab=92.11  E-value=30  Score=40.78  Aligned_cols=272  Identities=15%  Similarity=0.056  Sum_probs=153.5

Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhc-ccccccCCChhHHHHHHHHHhcCCC
Q 014817          104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFT-NINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~-~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      +.-+++-++....+. .+..|+..|......++..+..+ ...+|..++.-++. ++      ++ -..+|+..|.....
T Consensus       165 ~~lllNafSKw~~~~-~c~~aa~~la~~~~~~d~~~~~~-~~q~ia~~lNa~sKWp~------~~-~c~~aa~~la~~l~  235 (2710)
T PRK14707        165 ISLALNAFSKWSDNP-DCQAVAPRFAALVASDDRLRSAM-DAQGVATVLNALCKWPD------TP-DCGNAVSALAERLA  235 (2710)
T ss_pred             HHHHHHHhhcCCCCc-hHHHHHHHHHHHhcCChhhhccc-chHHHHHHHHHHhcCCC------Ch-hHHHHHHHHHHHHc
Confidence            444555554433222 24567777766555555555555 45566666666644 32      33 35566666664333


Q ss_pred             ChhHHHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChh-hhH
Q 014817          183 TETECMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPR-GLK  260 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~-~~~  260 (418)
                      ++...+..+ +.-.+.-.+.-|..- +..+...++.+|..=.  ..+...+..+.. .++-..|=.+-+-.  +.. .+.
T Consensus       236 ~~~~l~~~~-~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl--~~~~~l~~al~~-q~vanalNalSKwp--d~~vc~~  309 (2710)
T PRK14707        236 DESRLRNEL-KPQELGNALNALSKWADTPVCAAAASALAERL--VDDPGLRKALDP-INVTQALNALSKWA--DLPVCAE  309 (2710)
T ss_pred             CcHHHHHhC-ChHHHHHHHHHHhcCCCchHHHHHHHHHHHHH--hhhHHHHHhcCH-HHHHHHHhhhhcCC--CchHHHH
Confidence            443555555 444566666666553 4444555555554432  566666666632 33333333333333  334 444


Q ss_pred             HHHHHHHHHccccccHHHHHHcCchHHHHHHhcC-CCcccHHHHHHHH-HHHhcCHhHHHHHHhccCChHHHHHHHhc-C
Q 014817          261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLAD-FDKCDAERALATV-ELLCRIPAGCAEFAEHALTVPLLVKTILK-I  337 (418)
Q Consensus       261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~-~~~~~~~~a~~~L-~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~  337 (418)
                      +|...-..|....+-+.. .+.-.+..++.-|+. ++..+...++..| ..|+.+++.+..+-.  .++..+++-++. .
T Consensus       310 Aa~~la~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~~--q~~a~~lNalsKWp  386 (2710)
T PRK14707        310 AAIALAERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLEP--QGVSSVLNALSKWP  386 (2710)
T ss_pred             HHHHHHHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccch--hHHHHHHhhhhcCC
Confidence            444455566654444433 344445555666653 4555555555555 677788888877764  568888888887 5


Q ss_pred             ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817          338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL  394 (418)
Q Consensus       338 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  394 (418)
                      +..+...|+..|..=-.++++.++.+-..|+ .-++.-|+...+..+.+.|+..|..
T Consensus       387 ~~~~c~~aa~~LA~~l~~d~~l~~~~~~Q~v-an~lnalsKWPd~~~C~~aa~~lA~  442 (2710)
T PRK14707        387 DTPVCAAAASALAEHVVDDLELRKGLDPQGV-SNALNALAKWPDLPICGQAVSALAG  442 (2710)
T ss_pred             CchHHHHHHHHHHHHhccChhhhhhcchhhH-HHHHHHhhcCCcchhHHHHHHHHHH
Confidence            5556666666665544458888886655555 4455788777677777776665543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=92.11  E-value=13  Score=39.58  Aligned_cols=251  Identities=13%  Similarity=0.061  Sum_probs=128.8

Q ss_pred             hHHHHHHHHHhhh-cChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHH
Q 014817          121 RLSALRRLRGLAR-DSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITS  199 (418)
Q Consensus       121 ~~~Al~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~  199 (418)
                      +.........++. .+...+..+....++|.+-.+..+.       +..++...+..+..+.---  .+..- -.-.++.
T Consensus       372 r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~-------~~~vr~a~a~~~~~~~p~~--~k~~t-i~~llp~  441 (759)
T KOG0211|consen  372 RYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDN-------ALHVRSALASVITGLSPIL--PKERT-ISELLPL  441 (759)
T ss_pred             hHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcc-------cchHHHHHhccccccCccC--CcCcC-ccccChh
Confidence            4455555555543 2334455666667777777777665       4566665555443332111  11111 1234566


Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHH
Q 014817          200 LSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKA  279 (418)
Q Consensus       200 Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i  279 (418)
                      +...++...++++.+..+.+..+-  ...+.....+.. +..++.++.+-...  ...++.+..+.+..++....  ..+
T Consensus       442 ~~~~l~de~~~V~lnli~~ls~~~--~v~~v~g~~~~s-~slLp~i~el~~d~--~wRvr~ail~~ip~la~q~~--~~~  514 (759)
T KOG0211|consen  442 LIGNLKDEDPIVRLNLIDKLSLLE--EVNDVIGISTVS-NSLLPAIVELAEDL--LWRVRLAILEYIPQLALQLG--VEF  514 (759)
T ss_pred             hhhhcchhhHHHHHhhHHHHHHHH--hccCcccchhhh-hhhhhhhhhhccch--hHHHHHHHHHHHHHHHHhhh--hHH
Confidence            667777788888888887776662  223333333323 45788888887776  67888888888888876544  222


Q ss_pred             HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--CCH
Q 014817          280 VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS--ASE  357 (418)
Q Consensus       280 ~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~~  357 (418)
                      .+.-.-+.+..-+.+..-++.+.|+..|..++..-. .+....  -.++.++......+-..+...+.++..++.  +.+
T Consensus       515 ~~~~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~~--~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~e  591 (759)
T KOG0211|consen  515 FDEKLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWARL--EEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQE  591 (759)
T ss_pred             hhHHHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhHH--HhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccH
Confidence            221111222222223234566666666666663111 122221  123444443333333334333333333332  233


Q ss_pred             HHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          358 RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       358 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      -..     ...++.+..+.... .+.+|-++++.|..+..
T Consensus       592 i~~-----~~Llp~~~~l~~D~-vanVR~nvak~L~~i~~  625 (759)
T KOG0211|consen  592 ITC-----EDLLPVFLDLVKDP-VANVRINVAKHLPKILK  625 (759)
T ss_pred             HHH-----HHHhHHHHHhccCC-chhhhhhHHHHHHHHHh
Confidence            222     22555555555333 66667666666665544

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=91.96  E-value=0.12  Score=48.80  Aligned_cols=50  Identities=26%  Similarity=0.508  Sum_probs=40.1

Q ss_pred             cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014817           17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTL   67 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l   67 (418)
                      ...|.+++.+|.|||-...|-.|+...|-.|+.. +.+-|.+++++...++
T Consensus        40 ~~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk-~g~nP~tG~kl~~~dL   89 (518)
T KOG0883|consen   40 FNHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK-HGTNPITGQKLDGKDL   89 (518)
T ss_pred             hhhceeccccccCcccccCCcEEeeehhhHHHHH-cCCCCCCCCccccccc
Confidence            3489999999999999999999999999999986 5555666655544333

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=91.76  E-value=2  Score=38.03  Aligned_cols=150  Identities=13%  Similarity=0.090  Sum_probs=102.8

Q ss_pred             HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh-HHHhhcccCCchHHH
Q 014817          122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET-ECMEIASDADKITSL  200 (418)
Q Consensus       122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~L  200 (418)
                      ..|+..|.-+++ .++.|..++++.+--.|-.+|...+..+.  .+-.+..++.+++.|..+++ +....+....++|..
T Consensus       118 cnaL~lLQclaS-hPetk~~Fl~AhiplflypfLntss~~~~--fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLc  194 (315)
T COG5209         118 CNALNLLQCLAS-HPETKKVFLDAHIPLFLYPFLNTSSSNSK--FEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLC  194 (315)
T ss_pred             HHHHHHHHHHhc-CcchheeeeecccceeeHhhhhccccCCc--cceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHH
Confidence            456666666665 57889999988876667777754432111  34567788888888776653 345566678999999


Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhch-------hhhHHHHHHHh-hcCCCChhhhHHHHHHHHHHccc
Q 014817          201 SSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNL-------DEIFEGVIDIL-KNLSSYPRGLKVGIKALFALCLV  272 (418)
Q Consensus       201 v~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~-------~g~i~~Lv~lL-~~~~~~~~~~~~a~~aL~~L~~~  272 (418)
                      ++++..|+.-.+..|+.++..+   -.+|..-..|...       ..++..++.-+ ..+  .....+++.++-..||..
T Consensus       195 LrIme~gSElSktvaifI~qki---l~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~--~~RLlKh~iRcYlRLsd~  269 (315)
T COG5209         195 LRIMELGSELSKTVAIFIFQKI---LGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLG--STRLLKHAIRCYLRLSDK  269 (315)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHH---hccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHheeecCC
Confidence            9999999999999999999988   5566555544321       22334444333 334  567888888888888877


Q ss_pred             cccHHHH
Q 014817          273 KQTRYKA  279 (418)
Q Consensus       273 ~~n~~~i  279 (418)
                      ...|..+
T Consensus       270 p~aR~lL  276 (315)
T COG5209         270 PHARALL  276 (315)
T ss_pred             HhHHHHH
Confidence            7666544

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=91.48  E-value=0.22  Score=39.80  Aligned_cols=50  Identities=16%  Similarity=0.316  Sum_probs=41.5

Q ss_pred             CcccCcCccccccCCeec----CCCCcccHHHHHHHHH--cCCCCCCCCCCCCCCC
Q 014817           16 YHFRCPISLELMCDPVTV----CTGQTYDRPSIESWVA--TGNTTCPVTRSPLTDF   65 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dPv~~----~~g~~~~r~~i~~~~~--~~~~~cp~~~~~l~~~   65 (418)
                      .-+.|-||++.-.|.--+    .||+..|-.|-...|+  .-++.||+|+..+...
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence            457899999999999977    3899999999998665  3478899999888643

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=91.45  E-value=1.7  Score=44.32  Aligned_cols=123  Identities=20%  Similarity=0.159  Sum_probs=73.4

Q ss_pred             CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCc
Q 014817          206 HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGA  284 (418)
Q Consensus       206 ~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~  284 (418)
                      .|+...+..|+..|....  ...++    +.  ..+|.++++|.++.  +..++..|.+.|..+|... +...++     
T Consensus        33 kg~~k~K~Laaq~I~kff--k~FP~----l~--~~Ai~a~~DLcEDe--d~~iR~~aik~lp~~ck~~~~~v~kv-----   97 (556)
T PF05918_consen   33 KGSPKEKRLAAQFIPKFF--KHFPD----LQ--EEAINAQLDLCEDE--DVQIRKQAIKGLPQLCKDNPEHVSKV-----   97 (556)
T ss_dssp             GS-HHHHHHHHHHHHHHH--CC-GG----GH--HHHHHHHHHHHT-S--SHHHHHHHHHHGGGG--T--T-HHHH-----
T ss_pred             cCCHHHHHHHHHHHHHHH--hhChh----hH--HHHHHHHHHHHhcc--cHHHHHHHHHhHHHHHHhHHHHHhHH-----
Confidence            467889999999998884  33433    22  35899999999998  8999999999999999864 566664     


Q ss_pred             hHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHh---cCChHHHHHHHHHHHH
Q 014817          285 AETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTIL---KISDRATEYAAGALAA  351 (418)
Q Consensus       285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~---~~~~~~~~~A~~~L~~  351 (418)
                      +..|+++|.+.+..-...+-.+|..|...+.        .+.+..+...+.   ++++.+++.++..|..
T Consensus        98 aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~--------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen   98 ADVLVQLLQTDDPVELDAVKNSLMSLLKQDP--------KGTLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             HHHHHHHTT---HHHHHHHHHHHHHHHHH-H--------HHHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhcCc--------HHHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence            5679999987665444444444443332111        122223333333   4566677777766643

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=91.32  E-value=18  Score=36.72  Aligned_cols=272  Identities=11%  Similarity=0.045  Sum_probs=152.4

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcC-hHHHHH-HHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHN-VRAILS-QVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g-~i~~Lv-~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      ..++....... +...+.+++..+...|.. +.....+...+ ++-.++ .-++...      +..++..|+.+|..-..
T Consensus       136 ~~mv~nvg~eq-p~~~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k~et------~~avRLaaL~aL~dsl~  207 (858)
T COG5215         136 EEMVRNVGDEQ-PVSGKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALKNET------TSAVRLAALKALMDSLM  207 (858)
T ss_pred             HHHHHhccccC-chHhHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcccCc------hHHHHHHHHHHHHHHHH
Confidence            33444443332 333568899999988853 23333333333 222333 2333332      56788888888875211


Q ss_pred             C------hhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCCh
Q 014817          183 T------ETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYP  256 (418)
Q Consensus       183 ~------~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~  256 (418)
                      .      .++.|..+     +...++.-+..+.+++..+-..|..+.  ...-+.-..+.+ ......+.+.+++.  +.
T Consensus       208 fv~~nf~~E~erNy~-----mqvvceatq~~d~e~q~aafgCl~kim--~LyY~fm~~ymE-~aL~alt~~~mks~--nd  277 (858)
T COG5215         208 FVQGNFCYEEERNYF-----MQVVCEATQGNDEELQHAAFGCLNKIM--MLYYKFMQSYME-NALAALTGRFMKSQ--ND  277 (858)
T ss_pred             HHHHhhcchhhhchh-----heeeehhccCCcHHHHHHHHHHHHHHH--HHHHHHHHHHHH-HHHHHHHHHHhcCc--ch
Confidence            1      11223333     455566667778999998888888885  344444444433 22333344556666  77


Q ss_pred             hhhHHHHHHHHHHcccc---------------c--cHHHHHHcCchHHHHHHhcC-C-----C-cccHHHHHHHHHHHhc
Q 014817          257 RGLKVGIKALFALCLVK---------------Q--TRYKAVAAGAAETLVDRLAD-F-----D-KCDAERALATVELLCR  312 (418)
Q Consensus       257 ~~~~~a~~aL~~L~~~~---------------~--n~~~i~~~G~v~~Lv~lL~~-~-----~-~~~~~~a~~~L~~L~~  312 (418)
                      ++...|..--..+|...               .  +-.+..-++++|.|+.+|.. +     | =+....|..+|...+.
T Consensus       278 ~va~qavEfWsticeEeid~~~e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq  357 (858)
T COG5215         278 EVAIQAVEFWSTICEEEIDGEMEDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQ  357 (858)
T ss_pred             HHHHHHHHHHHHHHHHHhhhHHHHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHH
Confidence            77777776655554321               1  11222235689999999963 1     1 1333444445544332


Q ss_pred             CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHH
Q 014817          313 IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLL  392 (418)
Q Consensus       313 ~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L  392 (418)
                      .  ....+++  .++.-+=+.+.+++-..++.|+.++..+-.+..+....-+=..+++.+...+. +..--+++.++|.+
T Consensus       358 ~--~gd~i~~--pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n~m~-D~~l~vk~ttAwc~  432 (858)
T COG5215         358 L--KGDKIMR--PVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIENEMS-DSCLWVKSTTAWCF  432 (858)
T ss_pred             H--hhhHhHH--HHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHHhcc-cceeehhhHHHHHH
Confidence            1  1122332  12222333456688888999999999988754443333333456677766664 43667888999999


Q ss_pred             HHHHhhC
Q 014817          393 KLLRDSW  399 (418)
Q Consensus       393 ~~l~~~~  399 (418)
                      ..++.+-
T Consensus       433 g~iad~v  439 (858)
T COG5215         433 GAIADHV  439 (858)
T ss_pred             HHHHHHH
Confidence            8888763

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=91.31  E-value=1.6  Score=36.20  Aligned_cols=76  Identities=14%  Similarity=0.181  Sum_probs=64.1

Q ss_pred             CChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          325 LTVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       325 g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      .++..|.+.|.++++.++-.|+.+|-.+... ......++.+.+.+..|..++....++.+|+++..+++.-+..-+
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  117 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR  117 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence            3566788888889999999999998888873 467888899999999999999766689999999999998887654

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.31  E-value=0.11  Score=48.93  Aligned_cols=46  Identities=22%  Similarity=0.270  Sum_probs=36.1

Q ss_pred             CCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817           13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPL   62 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l   62 (418)
                      +.|-.-.|-||.+-.++.+-+||||+.|  |+.-...  ...||+|++.+
T Consensus       301 ~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~~--l~~CPvCR~rI  346 (355)
T KOG1571|consen  301 ELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSKH--LPQCPVCRQRI  346 (355)
T ss_pred             ccCCCCceEEecCCccceeeecCCcEEE--chHHHhh--CCCCchhHHHH
Confidence            4455567999999999999999999998  6655443  35599998654

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=91.29  E-value=3.2  Score=38.42  Aligned_cols=169  Identities=22%  Similarity=0.180  Sum_probs=101.7

Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcC--hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHN--VRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g--~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      ...++..+.....  +.++-+++-+|-++.. +.....+...+  +...+..++......   .++..+-.+++++.|+.
T Consensus        65 ~~~~~~~~~~Wp~--~~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~~~~~ml~lR~l~NlF  138 (268)
T PF08324_consen   65 LILLLKILLSWPP--ESRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSS---SPPANQMLALRLLANLF  138 (268)
T ss_dssp             HHHHHHHHCCS-C--CC-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTT---SSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhCCC--ccchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCC---CcHHHHHHHHHHHHHhh
Confidence            4455555555432  2467888888777654 44444454432  345555665443211   14667778899999998


Q ss_pred             CChhHHHhhcccC-C-chHHHHHHhcCC----CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCC
Q 014817          182 LTETECMEIASDA-D-KITSLSSLLFHS----SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSY  255 (418)
Q Consensus       182 ~~~~~~~~~i~~~-g-~i~~Lv~~L~~~----~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~  255 (418)
                      .+. ..+..+.+. + .+...+..+...    +..++..++.++.|++  ...-..+..--.....+..+++.+.....+
T Consensus       139 ~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nls--v~~~~~~~~~~~~~~ll~~i~~~~~~~~~d  215 (268)
T PF08324_consen  139 SHP-PGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLS--VLLHKNRSDEEWQSELLSSIIEVLSREESD  215 (268)
T ss_dssp             TSC-CCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHH--HHHHHCTS-CCHHHHHHHHHHHHCHCCHTS
T ss_pred             CCC-ccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHH--HHHHhcCCChHHHHHHHHHHHHHhccccCC
Confidence            776 667766654 3 344444444444    6899999999999994  222221211100123567777754443228


Q ss_pred             hhhhHHHHHHHHHHccccccHHHHHH
Q 014817          256 PRGLKVGIKALFALCLVKQTRYKAVA  281 (418)
Q Consensus       256 ~~~~~~a~~aL~~L~~~~~n~~~i~~  281 (418)
                      +++...++.||.+|...+.......+
T Consensus       216 ~Ea~~R~LvAlGtL~~~~~~~~~~~~  241 (268)
T PF08324_consen  216 EEALYRLLVALGTLLSSSDSAKQLAK  241 (268)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHhccChhHHHHHH
Confidence            99999999999999977766666655

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=91.09  E-value=1.7  Score=36.10  Aligned_cols=75  Identities=16%  Similarity=0.187  Sum_probs=63.4

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ++..|.+.|.+.++.++..|+.+|-.+.. .......++.+.+.+..|..++....+..++++...+++..+..-.
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~  113 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK  113 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence            46678888888999999999999999887 4456888899999999999999775589999999999998876543

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=91.07  E-value=8.1  Score=39.26  Aligned_cols=101  Identities=22%  Similarity=0.186  Sum_probs=75.8

Q ss_pred             cCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--CCHHH
Q 014817          282 AGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS--ASERC  359 (418)
Q Consensus       282 ~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~~~~  359 (418)
                      +|.+..+++-+.+.+..++..++.+|+.+..+-......... |.+..|.+.+....+.++..|+.+|..+-.  +++++
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N-~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen  168 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLAN-GLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEEN  168 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHH
Confidence            456666777777888899999999999888654444444443 778888888888899999999999877654  45554


Q ss_pred             HHHHHhcChHHHHHHHHhhCCCHHHHHHHHH
Q 014817          360 QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQL  390 (418)
Q Consensus       360 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~  390 (418)
                      +.       ...|+.+++.++++++|+.|..
T Consensus       169 ~~-------~n~l~~~vqnDPS~EVRr~all  192 (885)
T COG5218         169 RI-------VNLLKDIVQNDPSDEVRRLALL  192 (885)
T ss_pred             HH-------HHHHHHHHhcCcHHHHHHHHHH
Confidence            43       4577888888878999987643

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=91.01  E-value=18  Score=36.00  Aligned_cols=217  Identities=15%  Similarity=0.104  Sum_probs=123.8

Q ss_pred             HHHHHHHhcCCCChh---HHHhhcccCCchHHHHHHhcCCC-------HHHHHHHHHHHHHHHhcccchhhhh--Hhhch
Q 014817          171 HESLALLVMFPLTET---ECMEIASDADKITSLSSLLFHSS-------IEVRVNSAALIEIVLAGMRSQELRA--QISNL  238 (418)
Q Consensus       171 ~~a~~~L~~l~~~~~---~~~~~i~~~g~i~~Lv~~L~~~~-------~~~~~~a~~~L~~L~~~s~~~~~~~--~i~~~  238 (418)
                      -.|+-....+..+++   -+|+.+.++=+.+.+-++|.+++       .-.+..+..+|.-+   ...++...  .+   
T Consensus        29 fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacF---C~~pElAsh~~~---  102 (698)
T KOG2611|consen   29 FAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACF---CRVPELASHEEM---  102 (698)
T ss_pred             HHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHH---hCChhhccCHHH---
Confidence            333333334444432   35777777777888888886542       33455677777777   55554332  22   


Q ss_pred             hhhHHHHHHHhhcCCCChh------hhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCc-ccHHHHHHHHHHHh
Q 014817          239 DEIFEGVIDILKNLSSYPR------GLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDK-CDAERALATVELLC  311 (418)
Q Consensus       239 ~g~i~~Lv~lL~~~~~~~~------~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~-~~~~~a~~~L~~L~  311 (418)
                      -..||.|..++..+. +++      ....+-.+|..++........++..|+++.+-++-.-.+. .-++.++.++..+.
T Consensus       103 v~~IP~llev~~~~~-d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~~d~alal~Vlll~~  181 (698)
T KOG2611|consen  103 VSRIPLLLEVMSKGI-DTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGSHDMALALKVLLLLV  181 (698)
T ss_pred             HHhhhHHHHHHHhcC-CCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCchhHHHHHHHHHHHH
Confidence            236899999998764 444      7889999999999999999999999999999876543322 23344555554443


Q ss_pred             ----cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--CC----HHHHHHHHhcChHHHHHHHHhhCCC
Q 014817          312 ----RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS--AS----ERCQRDAVSAGVLTQLLLLVQSDCT  381 (418)
Q Consensus       312 ----~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~----~~~~~~~~~~g~i~~L~~ll~~~~~  381 (418)
                          ..++.-..+..-   |..+..=+...+...+-..+.+|..+-.  ++    +..+...+-.....-+..+|++.-.
T Consensus       182 ~~~~cw~e~~~~flal---i~~va~df~~~~~a~KfElc~lL~~vl~~~~~e~~~~pl~~~~w~~~l~~G~~~IL~~kv~  258 (698)
T KOG2611|consen  182 SKLDCWSETIERFLAL---IAAVARDFAVLHNALKFELCHLLSAVLSSEYSELLHEPLRSMNWADYLRTGVVAILQNKVA  258 (698)
T ss_pred             HhcccCcCCHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHHHhCChHHhccChhhhcchHHHHHHHHHHHHhcccC
Confidence                223322222221   2222222323444556666777664333  11    1122222333334445556655445


Q ss_pred             HHHHHHHHHHHHHHHh
Q 014817          382 DRAKRKAQLLLKLLRD  397 (418)
Q Consensus       382 ~~~~~~A~~~L~~l~~  397 (418)
                      +..|.-|..+..++..
T Consensus       259 p~qr~pAL~Laa~~~h  274 (698)
T KOG2611|consen  259 PSQRLPALILAANMMH  274 (698)
T ss_pred             chhcChHHHHHHHHHH
Confidence            6666666665555544

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=90.78  E-value=1.5  Score=31.77  Aligned_cols=67  Identities=12%  Similarity=-0.057  Sum_probs=55.1

Q ss_pred             HHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcC
Q 014817          212 RVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAG  283 (418)
Q Consensus       212 ~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G  283 (418)
                      .+.+.|++.++   ...+..-..+- ..++++.++++.++.+ ...+|..+..+|.-++.+.+....+.+.|
T Consensus         4 lKaaLWaighI---gss~~G~~lL~-~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHI---GSSPLGIQLLD-ESDIVEDIVKIAENSP-VLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhH---hcChHHHHHHh-hcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            46789999999   66666666664 3679999999999875 67899999999999999998888777665

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=90.64  E-value=0.71  Score=27.06  Aligned_cols=30  Identities=20%  Similarity=0.292  Sum_probs=25.2

Q ss_pred             hHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          368 VLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       368 ~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +++.++.+++++ ++++|..|+..|..+.++
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHhh
Confidence            367888999777 999999999999998764

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=90.49  E-value=2.3  Score=36.20  Aligned_cols=110  Identities=19%  Similarity=0.206  Sum_probs=71.8

Q ss_pred             CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc
Q 014817          195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK  273 (418)
Q Consensus       195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~  273 (418)
                      ..+..+..+|++.+.+.|..++..+...+   .... .+.+.. ..-.+..|+.+|+..+ .+.+.+.++.+|..|...-
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~---~~~~-~e~l~~~~~~W~~~Ll~~L~~~~-~~~~~~~ai~~L~~l~~~~   99 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTV---EQCS-WEILLSHGSQWLRALLSILEKPD-PPSVLEAAIITLTRLFDLI   99 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHH---HHhh-HHHHHHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHh
Confidence            34566788899999999999999998883   3322 233322 2348889999999874 6778888999888886543


Q ss_pred             cc----HHHHHH---cCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817          274 QT----RYKAVA---AGAAETLVDRLADFDKCDAERALATVELLC  311 (418)
Q Consensus       274 ~n----~~~i~~---~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~  311 (418)
                      ..    ..++.-   .+.++.++.++..  ....+.++.+|..|-
T Consensus       100 ~~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll  142 (165)
T PF08167_consen  100 RGKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLL  142 (165)
T ss_pred             cCCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHH
Confidence            32    333322   1334444444443  456677777777665

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=90.43  E-value=5.7  Score=35.30  Aligned_cols=148  Identities=9%  Similarity=-0.001  Sum_probs=99.7

Q ss_pred             HHHHHHHHHHHHhcccchhhhhHhhchhh---hHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc--cHHHHHHcCchH
Q 014817          212 RVNSAALIEIVLAGMRSQELRAQISNLDE---IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ--TRYKAVAAGAAE  286 (418)
Q Consensus       212 ~~~a~~~L~~L~~~s~~~~~~~~i~~~~g---~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~--n~~~i~~~G~v~  286 (418)
                      ..+|...|.-+   +.+++.|..+.. .-   .+-+.+....+....+-.+-.+++++..|..+++  ....+....+||
T Consensus       117 vcnaL~lLQcl---aShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivP  192 (315)
T COG5209         117 VCNALNLLQCL---ASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVP  192 (315)
T ss_pred             HHHHHHHHHHH---hcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHH
Confidence            34566677777   788888888754 22   2223333333332134567789999999998875  455667789999


Q ss_pred             HHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhcc-------CChHHHHHHH-hcCChHHHHHHHHHHHHHhcCCHH
Q 014817          287 TLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHA-------LTVPLLVKTI-LKISDRATEYAAGALAALCSASER  358 (418)
Q Consensus       287 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~-------g~i~~Lv~~l-~~~~~~~~~~A~~~L~~l~~~~~~  358 (418)
                      .+++++..++.-.+.-+..++..+..++.|-+.+.+.-       ..+..++.-+ +.++-+..++++++-..+|. +++
T Consensus       193 LcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd-~p~  271 (315)
T COG5209         193 LCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSD-KPH  271 (315)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecC-CHh
Confidence            99999988776667778888888888888777665421       1222223222 33777888999999888887 777


Q ss_pred             HHHHHH
Q 014817          359 CQRDAV  364 (418)
Q Consensus       359 ~~~~~~  364 (418)
                      .|....
T Consensus       272 aR~lL~  277 (315)
T COG5209         272 ARALLS  277 (315)
T ss_pred             HHHHHh
Confidence            666443

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=90.37  E-value=13  Score=33.56  Aligned_cols=191  Identities=16%  Similarity=0.175  Sum_probs=107.2

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV  245 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L  245 (418)
                      +++.+...+..|..++.++.     ....-++..|+.+...++.+.+..+...+..+-  ..++.    .   -+.+..+
T Consensus        14 ~~~~~~~~L~~L~~l~~~~~-----~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw--~~~~r----~---f~~L~~~   79 (234)
T PF12530_consen   14 DPELQLPLLEALPSLACHKN-----VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLW--KANDR----H---FPFLQPL   79 (234)
T ss_pred             ChHHHHHHHHHHHHHhccCc-----cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHH--HhCch----H---HHHHHHH
Confidence            68888999999998887651     222334566666677777777666677777772  11211    1   1345554


Q ss_pred             HHHh--h------cCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHh-cCCCcccHHHHHHHHHHHhcCHhH
Q 014817          246 IDIL--K------NLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRL-ADFDKCDAERALATVELLCRIPAG  316 (418)
Q Consensus       246 v~lL--~------~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~  316 (418)
                      +..+  +      ++....+.......++..+|...+++.    ...++.+...| .+.+...+..++..|..|+.    
T Consensus        80 L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g----~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~----  151 (234)
T PF12530_consen   80 LLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHG----VDLLPLLSGCLNQSCDEVAQALALEALAPLCE----  151 (234)
T ss_pred             HHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhH----HHHHHHHHHHHhccccHHHHHHHHHHHHHHHH----
Confidence            4441  1      111123445555678888888776622    34677888888 67677788899999999993    


Q ss_pred             HHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhC
Q 014817          317 CAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSD  379 (418)
Q Consensus       317 ~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~  379 (418)
                       ..+++-...-..+.+.+.. ..+.+.+.-+..+..+.. .-+..........++..+.++..+.
T Consensus       152 -~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~  215 (234)
T PF12530_consen  152 -AEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSS  215 (234)
T ss_pred             -HhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhcccc
Confidence             2233222233344444432 233333322222222222 1122334445566777777777544

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=90.34  E-value=15  Score=39.96  Aligned_cols=195  Identities=16%  Similarity=0.081  Sum_probs=124.7

Q ss_pred             CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc
Q 014817          195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ  274 (418)
Q Consensus       195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~  274 (418)
                      ++++.|..-|++.+..++..|++-+..++  ...+   ..++  ..+|...+.++.... ++..-..|+-+|..|+...=
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt--~rlp---~~La--d~vi~svid~~~p~e-~~~aWHgacLaLAELA~rGl  412 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVT--SRLP---PELA--DQVIGSVIDLFNPAE-DDSAWHGACLALAELALRGL  412 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHH--ccCc---HHHH--HHHHHHHHHhcCcCC-chhHHHHHHHHHHHHHhcCC
Confidence            56788888888899999999999999995  3333   2332  247777777666553 46777789999999987654


Q ss_pred             cHHHHHHcCchHHHHHHhc--------CCCcccHHHHHHHHHHHhcCHhH--HHHHHhccCChHHHHHHHhcCChHHHHH
Q 014817          275 TRYKAVAAGAAETLVDRLA--------DFDKCDAERALATVELLCRIPAG--CAEFAEHALTVPLLVKTILKISDRATEY  344 (418)
Q Consensus       275 n~~~i~~~G~v~~Lv~lL~--------~~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~~g~i~~Lv~~l~~~~~~~~~~  344 (418)
                      -....++ .++|.++.-|.        +....++..|+.+...+++..+-  -+-+... -.-..|...+...+-.++..
T Consensus       413 Llps~l~-dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDrevncRRA  490 (1133)
T KOG1943|consen  413 LLPSLLE-DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDREVNCRRA  490 (1133)
T ss_pred             cchHHHH-HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCchhhHhHH
Confidence            3333322 26677776663        11346788899999888854322  1222221 12224444556677788888


Q ss_pred             HHHHHHHHhcC--CH-----------------------HH-HHHHHhcChHHHHHHHH-----hhCCCHHHHHHHHHHHH
Q 014817          345 AAGALAALCSA--SE-----------------------RC-QRDAVSAGVLTQLLLLV-----QSDCTDRAKRKAQLLLK  393 (418)
Q Consensus       345 A~~~L~~l~~~--~~-----------------------~~-~~~~~~~g~i~~L~~ll-----~~~~~~~~~~~A~~~L~  393 (418)
                      |..|+.....+  +-                       .. +....-.|...++++-+     .++ +..+|+.|++.|.
T Consensus       491 AsAAlqE~VGR~~n~p~Gi~Lis~~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HW-d~~irelaa~aL~  569 (1133)
T KOG1943|consen  491 ASAALQENVGRQGNFPHGISLISTIDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHW-DVKIRELAAYALH  569 (1133)
T ss_pred             HHHHHHHHhccCCCCCCchhhhhhcchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccc-cHHHHHHHHHHHH
Confidence            88888776652  21                       01 11112245555555444     345 8999999999999


Q ss_pred             HHHhhCC
Q 014817          394 LLRDSWP  400 (418)
Q Consensus       394 ~l~~~~~  400 (418)
                      .|+..+.
T Consensus       570 ~Ls~~~p  576 (1133)
T KOG1943|consen  570 KLSLTEP  576 (1133)
T ss_pred             HHHHhhH
Confidence            9887654

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=90.32  E-value=0.53  Score=46.16  Aligned_cols=183  Identities=14%  Similarity=0.064  Sum_probs=109.1

Q ss_pred             HHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch------hhhhHhhchhhhH
Q 014817          169 LAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ------ELRAQISNLDEIF  242 (418)
Q Consensus       169 v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~------~~~~~i~~~~g~i  242 (418)
                      +...|..++..+..+..-......-..+...+...|.+.....|+.++|++.|++. +..+      ...+.+..  -.+
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITd-AL~~~~Ps~~s~~eR~sg--~ll  483 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITD-ALIVNMPTPDSFQERFSG--LLL  483 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHH-HHHcCCCCchHHHHHHHH--HHH
Confidence            44555566655555542222222234556667777777788999999999999942 1111      12222311  134


Q ss_pred             HHHHHHhhcC-CCChhhhHHHHHHHHHHccccc----cHHHHHHcCchHHHHHHh-cCCCcccHHHHHHHHHHHhcCHhH
Q 014817          243 EGVIDILKNL-SSYPRGLKVGIKALFALCLVKQ----TRYKAVAAGAAETLVDRL-ADFDKCDAERALATVELLCRIPAG  316 (418)
Q Consensus       243 ~~Lv~lL~~~-~~~~~~~~~a~~aL~~L~~~~~----n~~~i~~~G~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~  316 (418)
                      ..+++..... ..+..++.+|.++|.|+...-+    .-......|.+..++... ..+...++=+++.++.||..++..
T Consensus       484 ~~~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~  563 (728)
T KOG4535|consen  484 LKMLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEIIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPAL  563 (728)
T ss_pred             HHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHHHHHHHhcccceecccccccchHHHHHHHHhhcCccc
Confidence            4444443321 1156789999999999986533    222223344444444432 344567888999999999988765


Q ss_pred             HHHHHhccC-ChHHHHHHHhc-CChHHHHHHHHHHHHHhc
Q 014817          317 CAEFAEHAL-TVPLLVKTILK-ISDRATEYAAGALAALCS  354 (418)
Q Consensus       317 ~~~i~~~~g-~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~  354 (418)
                      +-+-..-+| +.+.|..++.. .|-+++-+|+.+|..-..
T Consensus       564 ~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~~  603 (728)
T KOG4535|consen  564 PLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPGK  603 (728)
T ss_pred             cccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCCC
Confidence            322222123 44556666554 788899999999877665

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=90.07  E-value=2.4  Score=34.64  Aligned_cols=76  Identities=14%  Similarity=0.131  Sum_probs=62.1

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhh--CCCHHHHHHHHHHHHHHHhhCCC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQS--DCTDRAKRKAQLLLKLLRDSWPQ  401 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~--~~~~~~~~~A~~~L~~l~~~~~~  401 (418)
                      ++..|-+.|.++++.++..|+.+|-.+... .+....++.....+..|+.++..  ..+..+|+++..++.........
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~  116 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG  116 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence            456777888889999999999999998883 44577888887888889999965  45789999999999998886553

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.99  E-value=28  Score=36.63  Aligned_cols=31  Identities=10%  Similarity=0.036  Sum_probs=19.3

Q ss_pred             hhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817          240 EIFEGVIDILKNLSSYPRGLKVGIKALFALCLV  272 (418)
Q Consensus       240 g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~  272 (418)
                      |.+--.+.+|...  +-+++..++.....|+.+
T Consensus       317 ~l~mDvLrvLss~--dldvr~Ktldi~ldLvss  347 (948)
T KOG1058|consen  317 GLIMDVLRVLSSP--DLDVRSKTLDIALDLVSS  347 (948)
T ss_pred             HHHHHHHHHcCcc--cccHHHHHHHHHHhhhhh
Confidence            4444555666666  667777777776666544

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=89.96  E-value=16  Score=38.02  Aligned_cols=116  Identities=10%  Similarity=0.006  Sum_probs=77.4

Q ss_pred             cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817          145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLA  224 (418)
Q Consensus       145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~  224 (418)
                      .|.+..|++-..+.       +..|+...+.+|..+.-.. ..+...+-.+....+..-|..-.+.+|..|+.+|..+  
T Consensus        84 ~~~f~hlLRg~Esk-------dk~VRfrvlqila~l~d~~-~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrl--  153 (892)
T KOG2025|consen   84 AGTFYHLLRGTESK-------DKKVRFRVLQILALLSDEN-AEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRL--  153 (892)
T ss_pred             HHHHHHHHhcccCc-------chhHHHHHHHHHHHHhccc-cccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHH--
Confidence            44555555555554       4678999999888776433 2233334456677888888888899999999999999  


Q ss_pred             cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHH
Q 014817          225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAV  280 (418)
Q Consensus       225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~  280 (418)
                       -.++. -+    ...+...|+.++++++ +++++.+|   |.|++.......-++
T Consensus       154 -Q~d~~-de----e~~v~n~l~~liqnDp-S~EVRRaa---LsnI~vdnsTlp~Iv  199 (892)
T KOG2025|consen  154 -QGDPK-DE----ECPVVNLLKDLIQNDP-SDEVRRAA---LSNISVDNSTLPCIV  199 (892)
T ss_pred             -hcCCC-CC----cccHHHHHHHHHhcCC-cHHHHHHH---HHhhccCcccchhHH
Confidence             42221 11    1236788999999886 88898865   456665555444444

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=89.94  E-value=10  Score=35.67  Aligned_cols=170  Identities=14%  Similarity=0.058  Sum_probs=103.3

Q ss_pred             CchHHHH-HHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc
Q 014817          195 DKITSLS-SLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK  273 (418)
Q Consensus       195 g~i~~Lv-~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~  273 (418)
                      +.+..|+ ..+++.++.+|+.|...|+-.   +.-+.   .++.  ..++.+...++.+  ++.++..|+.+|..+....
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~---~Lld~---~~a~--~~l~l~~~~~~~~--~~~v~~~al~~l~Dll~~~   95 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLC---CLLDK---ELAK--EHLPLFLQALQKD--DEEVKITALKALFDLLLTH   95 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHH---HHhCh---HHHH--HHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHc
Confidence            4455554 677888999999999999998   44443   3332  3578888888776  8999999999999997543


Q ss_pred             c--cHHH-------HHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc----CChH
Q 014817          274 Q--TRYK-------AVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK----ISDR  340 (418)
Q Consensus       274 ~--n~~~-------i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~----~~~~  340 (418)
                      .  ....       .-....+..+...|.+.+++++..++.-+..|--.+....   . ...+..|+-.-.+    ++..
T Consensus        96 g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~-~~vL~~Lll~yF~p~t~~~~~  171 (298)
T PF12719_consen   96 GIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---P-PKVLSRLLLLYFNPSTEDNQR  171 (298)
T ss_pred             CchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---H-HHHHHHHHHHHcCcccCCcHH
Confidence            2  1111       1224566777778877777888888877777663322111   0 1222233333322    2334


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC
Q 014817          341 ATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD  379 (418)
Q Consensus       341 ~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~  379 (418)
                      .++.=...+-..|..+++. +..+....++.+..+....
T Consensus       172 LrQ~L~~Ffp~y~~s~~~~-Q~~l~~~f~~~l~~~~~~~  209 (298)
T PF12719_consen  172 LRQCLSVFFPVYASSSPEN-QERLAEAFLPTLRTLSNAP  209 (298)
T ss_pred             HHHHHHHHHHHHHcCCHHH-HHHHHHHHHHHHHHHHhCc
Confidence            4433333344445544444 4566677777776666543

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=89.85  E-value=0.11  Score=53.32  Aligned_cols=65  Identities=17%  Similarity=0.366  Sum_probs=46.3

Q ss_pred             CCcccCcCccccccCCeecCCCCcccHHHHHHHHH--cCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 014817           15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVA--TGNTTCPVTRSPLTDFTLIPNHTLRRLIQD   79 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~--~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~   79 (418)
                      ..+..||||.....+|+.+.|.|.||+.|+...|.  .+...||+|+.............-.++++.
T Consensus        19 ~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe   85 (684)
T KOG4362|consen   19 QKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKE   85 (684)
T ss_pred             hhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHH
Confidence            45678999999999999999999999999998654  335679999855543333223333344443

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=89.59  E-value=2  Score=35.48  Aligned_cols=75  Identities=25%  Similarity=0.267  Sum_probs=61.6

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHH---HHHHHHHHHHHHHhhCC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDR---AKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~---~~~~A~~~L~~l~~~~~  400 (418)
                      ++..|.+.|.++++.++..|+.+|-.+.. ..+....++.....+..|..++.......   +|+++..++.......+
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~  121 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFK  121 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHC
Confidence            35568888888999999999999988888 34678888888899999999997654544   89999999988887654

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=89.53  E-value=26  Score=35.68  Aligned_cols=85  Identities=9%  Similarity=0.117  Sum_probs=48.7

Q ss_pred             HHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHH
Q 014817          124 ALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSL  203 (418)
Q Consensus       124 Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~  203 (418)
                      .+++.-.+.++++..+.+++     |.|-.-|++-       ...|.-.++.++..++...  ....+. .-.+..|-.+
T Consensus       247 lvr~~~~ll~~n~q~~~q~r-----pfL~~wls~k-------~emV~lE~Ar~v~~~~~~n--v~~~~~-~~~vs~L~~f  311 (898)
T COG5240         247 LVRATVELLKENSQALLQLR-----PFLNSWLSDK-------FEMVFLEAARAVCALSEEN--VGSQFV-DQTVSSLRTF  311 (898)
T ss_pred             hHHHHHHHHHhChHHHHHHH-----HHHHHHhcCc-------chhhhHHHHHHHHHHHHhc--cCHHHH-HHHHHHHHHH
Confidence            44445555555555444433     4444444433       2456677777666655422  011111 1235666677


Q ss_pred             hcCCCHHHHHHHHHHHHHHH
Q 014817          204 LFHSSIEVRVNSAALIEIVL  223 (418)
Q Consensus       204 L~~~~~~~~~~a~~~L~~L~  223 (418)
                      |++.....|-.|.++|..|+
T Consensus       312 L~s~rv~~rFsA~Riln~la  331 (898)
T COG5240         312 LKSTRVVLRFSAMRILNQLA  331 (898)
T ss_pred             HhcchHHHHHHHHHHHHHHH
Confidence            77888889999999999993

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=89.42  E-value=0.23  Score=46.70  Aligned_cols=45  Identities=22%  Similarity=0.332  Sum_probs=37.2

Q ss_pred             ccCcCccccccCCeecCCCCcc-cHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           18 FRCPISLELMCDPVTVCTGQTY-DRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~~~g~~~-~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      -.|=||+.--+|-+++||=|.. |..|-+...-+ +++||+|++++.
T Consensus       291 keCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q-~n~CPICRqpi~  336 (349)
T KOG4265|consen  291 KECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQ-TNNCPICRQPIE  336 (349)
T ss_pred             CeeEEEecCCcceEEecchhhehhHhHHHHHHHh-hcCCCccccchH
Confidence            4799999999999999999864 68887765433 678999999864

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=89.34  E-value=0.27  Score=37.34  Aligned_cols=27  Identities=19%  Similarity=0.577  Sum_probs=23.9

Q ss_pred             CCCCcccHHHHHHHHHcCCCCCCCCCCC
Q 014817           34 CTGQTYDRPSIESWVATGNTTCPVTRSP   61 (418)
Q Consensus        34 ~~g~~~~r~~i~~~~~~~~~~cp~~~~~   61 (418)
                      .|+|.|--.||.+|++. ...||.+.+.
T Consensus        80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKT-RNVCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence            59999999999999996 7889998764

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.26  E-value=21  Score=40.47  Aligned_cols=235  Identities=14%  Similarity=0.120  Sum_probs=126.9

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc--cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIAS--DADKITSLSSLLFHSSIEVRVNSAALIEIVLA  224 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~--~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~  224 (418)
                      .||.|.+.=.++       +..|+..-..+=.-|..+.   +..+-  -...+.-|+.-|.+....+|+.++.+|..|..
T Consensus       999 LIPrLyRY~yDP-------~~~Vq~aM~sIW~~Li~D~---k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~ 1068 (1702)
T KOG0915|consen  999 LIPRLYRYQYDP-------DKKVQDAMTSIWNALITDS---KKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQ 1068 (1702)
T ss_pred             hhHHHhhhccCC-------cHHHHHHHHHHHHHhccCh---HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHc
Confidence            345554444444       5667765555433444332   22221  23556777777777889999999999999986


Q ss_pred             cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH---HHHHHccc--c---ccHHHHHHcCchHHHHH--HhcC
Q 014817          225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK---ALFALCLV--K---QTRYKAVAAGAAETLVD--RLAD  294 (418)
Q Consensus       225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~---aL~~L~~~--~---~n~~~i~~~G~v~~Lv~--lL~~  294 (418)
                      +-..++..+.+   ......+.+..++=  .+.++++|-.   +|..|+..  +   ..+..-+-..++|.|++  .+ +
T Consensus      1069 g~~~~~~~e~l---pelw~~~fRvmDDI--KEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim-s 1142 (1702)
T KOG0915|consen 1069 GRPFDQVKEKL---PELWEAAFRVMDDI--KESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM-S 1142 (1702)
T ss_pred             CCChHHHHHHH---HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc-c
Confidence            65666666666   34677777777765  5667766544   55555421  1   12222222335555553  22 3


Q ss_pred             CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCC-----------hHHHHHHHHHHHH-HhcCCHHH--H
Q 014817          295 FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKIS-----------DRATEYAAGALAA-LCSASERC--Q  360 (418)
Q Consensus       295 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~-----------~~~~~~A~~~L~~-l~~~~~~~--~  360 (418)
                      .-.+++.-++.+|.-|+.+....-+-.- +..||.|+.....-.           ......|+..+.. +++++|-.  .
T Consensus      1143 ~v~evr~~si~tl~dl~Kssg~~lkP~~-~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi 1221 (1702)
T KOG0915|consen 1143 KVNEVRRFSIGTLMDLAKSSGKELKPHF-PKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETI 1221 (1702)
T ss_pred             chHHHHHHHHHHHHHHHHhchhhhcchh-hHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHH
Confidence            3457788899999999965443222111 234555555443322           2223444444433 33344321  1


Q ss_pred             H-------HHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          361 R-------DAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       361 ~-------~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      .       .-+-+..++.+.+++..+-.-..|-.++..+-.|...
T Consensus      1222 ~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r 1266 (1702)
T KOG0915|consen 1222 NKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQR 1266 (1702)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHH
Confidence            1       1112346777778876543344444555555555544

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=88.87  E-value=3.4  Score=33.78  Aligned_cols=75  Identities=19%  Similarity=0.220  Sum_probs=61.3

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHH-HHHHHHHHHHHHHhhCC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDR-AKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~-~~~~A~~~L~~l~~~~~  400 (418)
                      ++..|-+.|.++++.++..|+.+|-.+... ......++.+.+.+..|..++....+.. +++++..++..-...-.
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~  114 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK  114 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence            455678888889999999999999888873 5678888889999999999997654444 99999999988887544

Unpublished observations. Domain of unknown function.

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.21  E-value=0.33  Score=48.93  Aligned_cols=39  Identities=26%  Similarity=0.516  Sum_probs=30.9

Q ss_pred             CCcccCcCccccc----cCCeecCCCCcccHHHHHHHHHcCCCCCC
Q 014817           15 PYHFRCPISLELM----CDPVTVCTGQTYDRPSIESWVATGNTTCP   56 (418)
Q Consensus        15 ~~~~~Cpi~~~~~----~dPv~~~~g~~~~r~~i~~~~~~~~~~cp   56 (418)
                      .+.++|+||...|    ..||.+-||||.|+.|.+.-..   .+||
T Consensus         9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp   51 (861)
T KOG3161|consen    9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP   51 (861)
T ss_pred             HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC
Confidence            3457999996665    5799999999999999998654   3466

>PF04641 Rtf2: Rtf2 RING-finger

Probab=87.89  E-value=0.43  Score=44.03  Aligned_cols=37  Identities=19%  Similarity=0.401  Sum_probs=32.5

Q ss_pred             CCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHc
Q 014817           14 IPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVAT   50 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~   50 (418)
                      .-.|+.|+|++++|++||+. .-|+-|.+..|-+|+-.
T Consensus        31 ~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll~   68 (260)
T PF04641_consen   31 EARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLLD   68 (260)
T ss_pred             hCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHHh
Confidence            34578999999999999976 58999999999999864

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=87.82  E-value=1.7  Score=38.97  Aligned_cols=82  Identities=16%  Similarity=0.152  Sum_probs=61.4

Q ss_pred             ccHHHHHHHHHHHhcCHhHHHHHHhcc------CChHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHH-HHHHhcChH
Q 014817          298 CDAERALATVELLCRIPAGCAEFAEHA------LTVPLLVKTILK-ISDRATEYAAGALAALCSASERCQ-RDAVSAGVL  369 (418)
Q Consensus       298 ~~~~~a~~~L~~L~~~~~~~~~i~~~~------g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~-~~~~~~g~i  369 (418)
                      .-+.-|+.+|..|+-.+.|...+....      ..+..|++++.. ++...+|-|+-+|.++|.++.... ....+.+.|
T Consensus       139 SPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i  218 (257)
T PF12031_consen  139 SPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCI  218 (257)
T ss_pred             CHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchH
Confidence            346789999999997777766655431      234456666644 788899999999999999766554 566678999


Q ss_pred             HHHHHHHhhC
Q 014817          370 TQLLLLVQSD  379 (418)
Q Consensus       370 ~~L~~ll~~~  379 (418)
                      ..|+.++...
T Consensus       219 ~~Li~FiE~a  228 (257)
T PF12031_consen  219 SHLIAFIEDA  228 (257)
T ss_pred             HHHHHHHHHH
Confidence            9999999654

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=87.80  E-value=0.28  Score=51.56  Aligned_cols=46  Identities=22%  Similarity=0.517  Sum_probs=35.7

Q ss_pred             ccCcCcccccc-----CCeec--CCCCcccHHHHHHHHH-cCCCCCCCCCCCCC
Q 014817           18 FRCPISLELMC-----DPVTV--CTGQTYDRPSIESWVA-TGNTTCPVTRSPLT   63 (418)
Q Consensus        18 ~~Cpi~~~~~~-----dPv~~--~~g~~~~r~~i~~~~~-~~~~~cp~~~~~l~   63 (418)
                      --|+||=-++.     =|--.  -|.|.|--+|+-+|+. .++.+||.|+..++
T Consensus      1470 eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1470 EECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             chhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            36999988876     24433  2789999999999997 56788999996653

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=87.70  E-value=2  Score=44.25  Aligned_cols=101  Identities=24%  Similarity=0.128  Sum_probs=76.8

Q ss_pred             cCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--CCHHH
Q 014817          282 AGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS--ASERC  359 (418)
Q Consensus       282 ~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~~~~  359 (418)
                      +|.+..|++-..+.+..++-.++.+|..|..+...+..-+-. +....+...+....+.++.+|+.+|..+=.  .+++ 
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn-~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee-  161 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFN-KLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEE-  161 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHH-HHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCc-
Confidence            445556666666778889999999999999755555555553 677788888888999999999999988764  2332 


Q ss_pred             HHHHHhcChHHHHHHHHhhCCCHHHHHHHHH
Q 014817          360 QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQL  390 (418)
Q Consensus       360 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~  390 (418)
                            ..++..+..+++.++++++|+.|..
T Consensus       162 ------~~v~n~l~~liqnDpS~EVRRaaLs  186 (892)
T KOG2025|consen  162 ------CPVVNLLKDLIQNDPSDEVRRAALS  186 (892)
T ss_pred             ------ccHHHHHHHHHhcCCcHHHHHHHHH
Confidence                  3467888999998889999988644

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=87.61  E-value=13  Score=42.04  Aligned_cols=159  Identities=13%  Similarity=0.167  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc--HHHHHHcCchHHHHH
Q 014817          213 VNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT--RYKAVAAGAAETLVD  290 (418)
Q Consensus       213 ~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n--~~~i~~~G~v~~Lv~  290 (418)
                      ..+.++...|   +...+....+   .+.+..++..|..+  ...++..|+++|.++...+..  ....+..    .+-.
T Consensus       795 ~~a~li~~~l---a~~r~f~~sf---D~yLk~Il~~l~e~--~ialRtkAlKclS~ive~Dp~vL~~~dvq~----~Vh~  862 (1692)
T KOG1020|consen  795 DDAKLIVFYL---AHARSFSQSF---DPYLKLILSVLGEN--AIALRTKALKCLSMIVEADPSVLSRPDVQE----AVHG  862 (1692)
T ss_pred             hhHHHHHHHH---HhhhHHHHhh---HHHHHHHHHHhcCc--hHHHHHHHHHHHHHHHhcChHhhcCHHHHH----HHHH
Confidence            4566666666   3443333333   56888888889877  789999999999999877652  1222333    3344


Q ss_pred             HhcCCCcccHHHHHHHHHHHh-cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChH
Q 014817          291 RLADFDKCDAERALATVELLC-RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVL  369 (418)
Q Consensus       291 lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i  369 (418)
                      -+.+....+++.|+.++..-. .+++.-.+..+      .+.+.+...+-.++.++++++..+|...|..-.      .+
T Consensus       863 R~~DssasVREAaldLvGrfvl~~~e~~~qyY~------~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~------i~  930 (1692)
T KOG1020|consen  863 RLNDSSASVREAALDLVGRFVLSIPELIFQYYD------QIIERILDTGVSVRKRVIKILRDICEETPDFSK------IV  930 (1692)
T ss_pred             hhccchhHHHHHHHHHHhhhhhccHHHHHHHHH------HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhh------HH
Confidence            555667789999999997433 45665555544      355566778889999999999999996665433      23


Q ss_pred             HHHHHHHhh-CC-CHHHHHHHHHHHHHH
Q 014817          370 TQLLLLVQS-DC-TDRAKRKAQLLLKLL  395 (418)
Q Consensus       370 ~~L~~ll~~-~~-~~~~~~~A~~~L~~l  395 (418)
                      ..+.++|.. +. ...+++.+..++..+
T Consensus       931 ~~cakmlrRv~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  931 DMCAKMLRRVNDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            444444432 21 233677766655443

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.55  E-value=11  Score=39.46  Aligned_cols=116  Identities=16%  Similarity=0.060  Sum_probs=66.0

Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHH------
Q 014817          196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFAL------  269 (418)
Q Consensus       196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L------  269 (418)
                      .+|.+..-|.+.+.-+|.+|..+++.+   ...-   ..+.  ..+-+.+-+.|.... ++..+++|..-|...      
T Consensus       135 l~p~IracleHrhsYVRrNAilaifsI---yk~~---~~L~--pDapeLi~~fL~~e~-DpsCkRNAFi~L~~~D~ErAl  205 (948)
T KOG1058|consen  135 LMPSIRACLEHRHSYVRRNAILAIFSI---YKNF---EHLI--PDAPELIESFLLTEQ-DPSCKRNAFLMLFTTDPERAL  205 (948)
T ss_pred             hHHHHHHHHhCcchhhhhhhheeehhH---Hhhh---hhhc--CChHHHHHHHHHhcc-CchhHHHHHHHHHhcCHHHHH
Confidence            466667777888999999999999988   5441   1222  123333444444443 677777776544332      


Q ss_pred             ---cccc-------c-cHHHH-------------HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHH
Q 014817          270 ---CLVK-------Q-TRYKA-------------VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEF  320 (418)
Q Consensus       270 ---~~~~-------~-n~~~i-------------~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i  320 (418)
                         ..+-       + -..-+             .++-.+..+..+|.+.+..+.-+|++.|..|+..+..-...
T Consensus       206 ~Yl~~~idqi~~~~~~LqlViVE~Irkv~~~~p~~~~~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A  280 (948)
T KOG1058|consen  206 NYLLSNIDQIPSFNDSLQLVIVELIRKVCLANPAEKARYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA  280 (948)
T ss_pred             HHHHhhHhhccCccHHHHHHHHHHHHHHHhcCHHHhhHHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH
Confidence               2211       1 00001             12334666777777666666667777777776655544433

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=87.36  E-value=26  Score=38.90  Aligned_cols=237  Identities=16%  Similarity=0.127  Sum_probs=133.7

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh-HHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET-ECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG  225 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~  225 (418)
                      +++.+...++.-.      ..+.+..|+..|..|+..-+ +.+    -..++|-+|.++......+|..|..+|..+.  
T Consensus       423 ~vs~lts~IR~lk------~~~tK~~ALeLl~~lS~~i~de~~----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L--  490 (1431)
T KOG1240|consen  423 FVSVLTSCIRALK------TIQTKLAALELLQELSTYIDDEVK----LDRVLPYFVHLLMDSEADVRATALETLTELL--  490 (1431)
T ss_pred             eHHHHHHHHHhhh------cchhHHHHHHHHHHHhhhcchHHH----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHH--
Confidence            3455555554432      35667888888888775321 211    1245899999999999999999999998886  


Q ss_pred             ccchh---hhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc------------------ccccH--------
Q 014817          226 MRSQE---LRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL------------------VKQTR--------  276 (418)
Q Consensus       226 s~~~~---~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~------------------~~~n~--------  276 (418)
                      +...+   .-..|.. +=.+|.|-+++.+.+ ...++..=+..|..||.                  ++.|-        
T Consensus       491 ~~Vr~~~~~daniF~-eYlfP~L~~l~~d~~-~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~  568 (1431)
T KOG1240|consen  491 ALVRDIPPSDANIFP-EYLFPHLNHLLNDSS-AQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNY  568 (1431)
T ss_pred             hhccCCCcccchhhH-hhhhhhhHhhhccCc-cceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCccccccccccc
Confidence            32221   1112323 237788888888742 34445444444544432                  11111        


Q ss_pred             ---HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc----------------------CHhHHHHHHh---------
Q 014817          277 ---YKAVAAGAAETLVDRLADFDKCDAERALATVELLCR----------------------IPAGCAEFAE---------  322 (418)
Q Consensus       277 ---~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~----------------------~~~~~~~i~~---------  322 (418)
                         ...+-.++=+..+.+|..+++.++...+..|.-||.                      +..-|-++.+         
T Consensus       569 ~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~V  648 (1431)
T KOG1240|consen  569 NTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIVGVSIFV  648 (1431)
T ss_pred             chHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhccceEEEE
Confidence               000111222233345555444455555555555552                      2223434333         


Q ss_pred             -----ccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          323 -----HALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       323 -----~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                           ..+.+|.|.+-|..+.+.+-..|+.+|..|+. ..-.++..+ -.+++-..-+|-++ +.=+|+.+..++-...+
T Consensus       649 G~rs~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik-~~ll~K~~v-~~i~~~v~PlL~hP-N~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  649 GWRSVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIK-LGLLRKPAV-KDILQDVLPLLCHP-NLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             eeeeHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHH-hcccchHHH-HHHHHhhhhheeCc-hHHHHHHHHHHHHHHHh
Confidence                 12466777777777888999999999999998 222222110 11222233334345 88899999998888777


Q ss_pred             hCC
Q 014817          398 SWP  400 (418)
Q Consensus       398 ~~~  400 (418)
                      .+.
T Consensus       726 ~ls  728 (1431)
T KOG1240|consen  726 QLS  728 (1431)
T ss_pred             hhh
Confidence            553

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=87.21  E-value=1  Score=44.31  Aligned_cols=166  Identities=14%  Similarity=0.045  Sum_probs=96.7

Q ss_pred             ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc----cccHHHHHH-c-C-chHHHHHHhcC---C
Q 014817          226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV----KQTRYKAVA-A-G-AAETLVDRLAD---F  295 (418)
Q Consensus       226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~----~~n~~~i~~-~-G-~v~~Lv~lL~~---~  295 (418)
                      -.+...+...+-...+...+...|.+.  .-..+..++|++.|++..    -.+.....+ . | .+..++..-..   .
T Consensus       419 VLHp~lr~d~~fv~~aa~~il~sl~d~--~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad  496 (728)
T KOG4535|consen  419 VLHPCLRQDVIFVADAANAILMSLEDK--SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASAD  496 (728)
T ss_pred             EeccchhhhHHHHHHHHHHHHHHhhhH--hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            345554444433244566666777765  567888999999999632    123222222 1 1 23333333221   2


Q ss_pred             CcccHHHHHHHHHHHhcCHh-----HHHHHHhccCChHHHHHHH-hcCChHHHHHHHHHHHHHhcCCHHH--HHHHHhcC
Q 014817          296 DKCDAERALATVELLCRIPA-----GCAEFAEHALTVPLLVKTI-LKISDRATEYAAGALAALCSASERC--QRDAVSAG  367 (418)
Q Consensus       296 ~~~~~~~a~~~L~~L~~~~~-----~~~~i~~~~g~i~~Lv~~l-~~~~~~~~~~A~~~L~~l~~~~~~~--~~~~~~~g  367 (418)
                      +..+..++..+|.++..--+     +-..+.+  |.+..+.... ......++=+|+-++.||.+ ++..  +..=+..-
T Consensus       497 ~dkV~~navraLgnllQvlq~i~~~~~~e~~~--~~~~~l~~~v~~~~~~kV~WNaCya~gNLfk-n~a~~lq~~~wA~~  573 (728)
T KOG4535|consen  497 KDKVKSNAVRALGNLLQFLQPIEKPTFAEIIE--ESIQALISTVLTEAAMKVRWNACYAMGNLFK-NPALPLQTAPWASQ  573 (728)
T ss_pred             hhhhhhHHHHHHhhHHHHHHHhhhccHHHHHH--HHHHhcccceecccccccchHHHHHHHHhhc-CccccccCCCchHH
Confidence            35678888888888874222     1122222  2222222222 12677889999999999998 3332  22223345


Q ss_pred             hHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 014817          368 VLTQLLLLVQSDCTDRAKRKAQLLLKLLR  396 (418)
Q Consensus       368 ~i~~L~~ll~~~~~~~~~~~A~~~L~~l~  396 (418)
                      +++.|..++.+..+-++|-+|+.+|..-.
T Consensus       574 ~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~  602 (728)
T KOG4535|consen  574 AFNALTSLVTSCKNFKVRIRAAAALSVPG  602 (728)
T ss_pred             HHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence            78888888877668888888888876443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=87.17  E-value=12  Score=39.80  Aligned_cols=175  Identities=10%  Similarity=-0.007  Sum_probs=112.3

Q ss_pred             HHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCch--HHHHHHhcCC
Q 014817          218 LIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAA--ETLVDRLADF  295 (418)
Q Consensus       218 ~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v--~~Lv~lL~~~  295 (418)
                      +|+++.  ..+.+++..+.. .|++..+...++.-. +.+....+.+.|.|++...+.+......--+  ..+-.++..-
T Consensus       494 ~l~~~t--~~~~~~C~~~l~-~~g~~~~~~~l~~f~-~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w  569 (699)
T KOG3665|consen  494 ALWNIT--DENPETCKEFLD-NGGMKLLFKCLESFD-NEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKW  569 (699)
T ss_pred             HHHhhh--cCCHHHHHHHHh-cccHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc
Confidence            788886  678888888866 789999999999774 7889999999999999776543222111111  1222233333


Q ss_pred             Cc-ccHHHHHHHHHHHhcCHh----------HHHHHHhc-------------cCChHH-HHHHHhc-CChHHHHHHHHHH
Q 014817          296 DK-CDAERALATVELLCRIPA----------GCAEFAEH-------------ALTVPL-LVKTILK-ISDRATEYAAGAL  349 (418)
Q Consensus       296 ~~-~~~~~a~~~L~~L~~~~~----------~~~~i~~~-------------~g~i~~-Lv~~l~~-~~~~~~~~A~~~L  349 (418)
                      +. +....++++|+.+..+.+          ..+.+.+.             ...+.+ +..++.. ..+..+-+|++++
T Consensus       570 ~~~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti  649 (699)
T KOG3665|consen  570 DSIERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTI  649 (699)
T ss_pred             chhhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHH
Confidence            33 556677777777765321          11111110             012223 4444433 6777889999999


Q ss_pred             HHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 014817          350 AALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLR  396 (418)
Q Consensus       350 ~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~  396 (418)
                      .++...+++..+.+.+.|+++.+..+-........++.+..++.+..
T Consensus       650 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  696 (699)
T KOG3665|consen  650 KNVLEQNKEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCE  696 (699)
T ss_pred             HHHHHcChhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhccc
Confidence            99998777788888899999888766532215556666666655443

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=86.95  E-value=50  Score=35.85  Aligned_cols=259  Identities=11%  Similarity=0.081  Sum_probs=137.7

Q ss_pred             HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhccccc-ccCCChhHHHHHHHHHhcCCC---ChhHHHhhcccCCch
Q 014817          122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINV-KTASSPELAHESLALLVMFPL---TETECMEIASDADKI  197 (418)
Q Consensus       122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~-~~~~~~~v~~~a~~~L~~l~~---~~~~~~~~i~~~g~i  197 (418)
                      ..|+..+..+++..  .+..+  .|+++.++++|.+..+. ....++.-.+.|+.+++.|+.   .....+..+ +.=.+
T Consensus       390 ~Aa~~~l~~~~~KR--~ke~l--~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~m-E~flv  464 (1010)
T KOG1991|consen  390 TAALDFLTTLVSKR--GKETL--PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQM-EYFLV  464 (1010)
T ss_pred             HHHHHHHHHHHHhc--chhhh--hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHH-HHHHH
Confidence            56777777776542  12222  47889999999743221 111256667778888777651   111122222 22234


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH-
Q 014817          198 TSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR-  276 (418)
Q Consensus       198 ~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~-  276 (418)
                      ..+...+++...-.|..|||++..+   +. .+.+..-.. ..+++.....|.+.. +-.++..|+-||..+-++.+-. 
T Consensus       465 ~hVfP~f~s~~g~Lrarac~vl~~~---~~-~df~d~~~l-~~ale~t~~~l~~d~-~lPV~VeAalALq~fI~~~~~~~  538 (1010)
T KOG1991|consen  465 NHVFPEFQSPYGYLRARACWVLSQF---SS-IDFKDPNNL-SEALELTHNCLLNDN-ELPVRVEAALALQSFISNQEQAD  538 (1010)
T ss_pred             HHhhHhhcCchhHHHHHHHHHHHHH---Hh-ccCCChHHH-HHHHHHHHHHhccCC-cCchhhHHHHHHHHHHhcchhhh
Confidence            5555666788888999999999999   32 222222211 347777778777442 6788999999999887776533 


Q ss_pred             HHHHH--cCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHH----HHHHhccCChHHHHHHHhc------CChHHHH
Q 014817          277 YKAVA--AGAAETLVDRLADFDKCDAERALATVELLC-RIPAGC----AEFAEHALTVPLLVKTILK------ISDRATE  343 (418)
Q Consensus       277 ~~i~~--~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~----~~i~~~~g~i~~Lv~~l~~------~~~~~~~  343 (418)
                      ..+-.  -+.++.|+.+.+.-+.+..   ..++..+. ..++.-    -.++.  .....+++++.+      ++..-+-
T Consensus       539 e~~~~hvp~~mq~lL~L~ne~End~L---t~vme~iV~~fseElsPfA~eL~q--~La~~F~k~l~~~~~~~~~~ddk~i  613 (1010)
T KOG1991|consen  539 EKVSAHVPPIMQELLKLSNEVENDDL---TNVMEKIVCKFSEELSPFAVELCQ--NLAETFLKVLQTSEDEDESDDDKAI  613 (1010)
T ss_pred             hhHhhhhhHHHHHHHHHHHhcchhHH---HHHHHHHHHHHHHhhchhHHHHHH--HHHHHHHHHHhccCCCCccchHHHH
Confidence            33322  2445555555554332222   22333332 222211    12222  234456666663      3344456


Q ss_pred             HHHHHHHHHhc------CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          344 YAAGALAALCS------ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       344 ~A~~~L~~l~~------~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      .|.++|..+..      ..++..+. .+.-+.+.+-.+|+++ -...-+.+..++..+.-.
T Consensus       614 aA~GiL~Ti~Til~s~e~~p~vl~~-le~~~l~vi~~iL~~~-i~dfyeE~~ei~~~~t~~  672 (1010)
T KOG1991|consen  614 AASGILRTISTILLSLENHPEVLKQ-LEPIVLPVIGFILKND-ITDFYEELLEIVSSLTFL  672 (1010)
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHH-HHHHHHHHHHHHHHHh-hHHHHHHHHHHHhhhhhh
Confidence            67777777655      12222221 1223344444445555 444555555555555444

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=86.93  E-value=4.7  Score=33.28  Aligned_cols=74  Identities=23%  Similarity=0.217  Sum_probs=61.0

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQS-----DCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ++..+.+.|.+.++.++..|+.+|-.+.. ....+..++.+.+.+..|+.++..     ..+..+|++...+++.-+...
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLEL  118 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            46678888888999999999999999887 445678889999999999999953     246899999999888877643

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.69  E-value=0.7  Score=43.55  Aligned_cols=62  Identities=23%  Similarity=0.314  Sum_probs=46.1

Q ss_pred             cCcCcccccc------CCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCC--CC---CCCcccHHHHHHHHHH
Q 014817           19 RCPISLELMC------DPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPL--TD---FTLIPNHTLRRLIQDW   80 (418)
Q Consensus        19 ~Cpi~~~~~~------dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l--~~---~~l~~n~~L~~~i~~~   80 (418)
                      .|=||.+.|+      -|-.+.|||++|..|+.+.+..+.-.||.|+.+.  ..   ..+..|.++-+.++..
T Consensus         5 ~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    5 ECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             ceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            4677766654      4668889999999999998887777899999884  21   3456666776666665

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=86.46  E-value=8.3  Score=32.65  Aligned_cols=144  Identities=13%  Similarity=0.065  Sum_probs=79.0

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc-cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIAS-DADKITSLSSLLFHSSIEVRVNSAALIEIVLAG  225 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~  225 (418)
                      .++.|+++|+++.      +..++.+++.+|+.|..=++...+.+. ......     -...+........ ...+..  
T Consensus        11 LL~~L~~iLk~e~------s~~iR~E~lr~lGilGALDP~~~k~~~~~~~~~~-----~~~~~~~~~~~~l-~~~~~~--   76 (160)
T PF11865_consen   11 LLDILLNILKTEQ------SQSIRREALRVLGILGALDPYKHKSIQKSLDSKS-----SENSNDESTDISL-PMMGIS--   76 (160)
T ss_pred             HHHHHHHHHHhCC------CHHHHHHHHHHhhhccccCcHHHhcccccCCccc-----cccccccchhhHH-hhccCC--
Confidence            4567788887774      689999999999988544422222221 111000     0111111111111 111110  


Q ss_pred             ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817          226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADFDKCDAERAL  304 (418)
Q Consensus       226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~  304 (418)
                      ...++....     .++..|+++|++.+ -..-...+..++.++..... .+...... ++|.+++.++..+....+...
T Consensus        77 ~~~ee~y~~-----vvi~~L~~iL~D~s-Ls~~h~~vv~ai~~If~~l~~~cv~~L~~-viP~~l~~i~~~~~~~~e~~~  149 (160)
T PF11865_consen   77 PSSEEYYPT-----VVINALMRILRDPS-LSSHHTAVVQAIMYIFKSLGLKCVPYLPQ-VIPIFLRVIRTCPDSLREFYF  149 (160)
T ss_pred             CchHHHHHH-----HHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhcCcCchhHHHH-HhHHHHHHHHhCCHHHHHHHH
Confidence            123333222     36788999999874 34444567778777774432 33333333 889999999876667777666


Q ss_pred             HHHHHHh
Q 014817          305 ATVELLC  311 (418)
Q Consensus       305 ~~L~~L~  311 (418)
                      .-|..|.
T Consensus       150 ~qL~~lv  156 (160)
T PF11865_consen  150 QQLADLV  156 (160)
T ss_pred             HHHHHHH
Confidence            5555543

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=86.37  E-value=4.3  Score=43.21  Aligned_cols=148  Identities=15%  Similarity=0.069  Sum_probs=97.3

Q ss_pred             CCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh-chhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817          194 ADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS-NLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV  272 (418)
Q Consensus       194 ~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~  272 (418)
                      ...+|.|++.....+...+..-..+|.+..  ...+  +..+. .....+|.|++-|.-.  |..++-.++++|..+-.-
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl--~~vP--~~vllp~~~~LlPLLLq~Ls~~--D~~v~vstl~~i~~~l~~  939 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVL--TNVP--KQVLLPQFPMLLPLLLQALSMP--DVIVRVSTLRTIPMLLTE  939 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHH--hcCC--HHhhccchhhHHHHHHHhcCCC--ccchhhhHhhhhhHHHHh
Confidence            356888888887666677777777777774  2222  23332 2245778888888877  788888888888877544


Q ss_pred             cccHHHHHHcCchHHHHHHhcCCC---cccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHH
Q 014817          273 KQTRYKAVAAGAAETLVDRLADFD---KCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGA  348 (418)
Q Consensus       273 ~~n~~~i~~~G~v~~Lv~lL~~~~---~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~  348 (418)
                      ...-..---.-.||.++.+=.+++   ..+++.|+..|..|.+ -|...-.-.. ..++..|.+.|.+....+++.|+.+
T Consensus       940 ~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr-~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  940 SETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFR-PLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             ccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCccccccc-HHHHHHhhhccCcHHHHHHHHHHHH
Confidence            332211111235666666655554   3567889999999997 4443333333 3677788888888888888888876

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.19  E-value=0.38  Score=50.19  Aligned_cols=39  Identities=18%  Similarity=0.385  Sum_probs=34.9

Q ss_pred             ccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCC
Q 014817           18 FRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRS   60 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~   60 (418)
                      -.|..|.-.+.-|++- .|||.|-++|.+    .+...||.|+.
T Consensus       841 skCs~C~~~LdlP~VhF~CgHsyHqhC~e----~~~~~CP~C~~  880 (933)
T KOG2114|consen  841 SKCSACEGTLDLPFVHFLCGHSYHQHCLE----DKEDKCPKCLP  880 (933)
T ss_pred             eeecccCCccccceeeeecccHHHHHhhc----cCcccCCccch
Confidence            3799999999999998 899999999988    46788999964

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=86.08  E-value=2.1  Score=38.40  Aligned_cols=123  Identities=19%  Similarity=0.165  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHHHHHHhcccch---hhhhHhhchhhhHHHHHHHhhcCC-------------CChhhhHHHHHHHHHHccc
Q 014817          209 IEVRVNSAALIEIVLAGMRSQ---ELRAQISNLDEIFEGVIDILKNLS-------------SYPRGLKVGIKALFALCLV  272 (418)
Q Consensus       209 ~~~~~~a~~~L~~L~~~s~~~---~~~~~i~~~~g~i~~Lv~lL~~~~-------------~~~~~~~~a~~aL~~L~~~  272 (418)
                      ...|++|..+|.|+   +..=   ++-+.|..  -+++.|++..-...             ..-.-+.-|+.+|..|+..
T Consensus        80 ~~lREnalV~laNi---sgqLdLs~~~e~I~~--PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~  154 (257)
T PF12031_consen   80 EQLRENALVTLANI---SGQLDLSDYPESIAR--PILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVI  154 (257)
T ss_pred             HHHhhcceEeeeee---eeeeecccCchHHHH--HHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhhee
Confidence            46677777788887   4222   22233321  24445555442110             0235688999999999999


Q ss_pred             cccHHHHHHcCc-------hHHHHHHhcC-CCcccHHHHHHHHHHHhcCHhHHH-HHHhccCChHHHHHHHhc
Q 014817          273 KQTRYKAVAAGA-------AETLVDRLAD-FDKCDAERALATVELLCRIPAGCA-EFAEHALTVPLLVKTILK  336 (418)
Q Consensus       273 ~~n~~~i~~~G~-------v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~-~i~~~~g~i~~Lv~~l~~  336 (418)
                      +.|...++..+-       +..|+++|.. .+.-.+|-|+.+|.+|+..++... .+..+.++|..|+..+..
T Consensus       155 e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~  227 (257)
T PF12031_consen  155 ENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIED  227 (257)
T ss_pred             ccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHH
Confidence            999888776554       3445555543 466778999999999997665433 454456899999998855

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.83  E-value=11  Score=40.00  Aligned_cols=181  Identities=15%  Similarity=0.169  Sum_probs=107.3

Q ss_pred             HHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHH
Q 014817          201 SSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAV  280 (418)
Q Consensus       201 v~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~  280 (418)
                      +..+.++-..+|..+...|+.+   ....+.+..+.. .+++....++|++.  ++-+--+|...+..||.-       -
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l---~e~r~~~~~~~~-ekvl~i~ld~Lkde--dsyvyLnaI~gv~~Lcev-------y  799 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHL---IEKRKKATLIQG-EKVLAIALDTLKDE--DSYVYLNAIRGVVSLCEV-------Y  799 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHH---HHhcchhhhhhH-HHHHHHHHHHhccc--CceeeHHHHHHHHHHHHh-------c
Confidence            3444455677888888899998   454454555544 68999999999988  777777777766666643       2


Q ss_pred             HcCchHHHHH-HhcCCCc---ccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcC
Q 014817          281 AAGAAETLVD-RLADFDK---CDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSA  355 (418)
Q Consensus       281 ~~G~v~~Lv~-lL~~~~~---~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~  355 (418)
                      ....+|-|.+ +....+.   ...-..-.++.+++. -.+-.....+  -.+...+..++.++...+..++.++.++|..
T Consensus       800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~  877 (982)
T KOG4653|consen  800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQL  877 (982)
T ss_pred             chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence            2345666666 4433211   112222234444331 1111111111  1233444444445666688888899998872


Q ss_pred             CHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          356 SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       356 ~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      ..-.... +-..++..++.+...+++.-.||+|.-+++.+-.
T Consensus       878 ~a~~vsd-~~~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~  918 (982)
T KOG4653|consen  878 LAFQVSD-FFHEVLQLILSLETTDGSVLVRRAAVHLLAELLN  918 (982)
T ss_pred             HhhhhhH-HHHHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence            2211111 2234666777777777789999999999988765

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=85.79  E-value=37  Score=33.17  Aligned_cols=85  Identities=12%  Similarity=0.071  Sum_probs=62.1

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCC-----CHHHHHHHHHHHHHHHhcccchhhhhHhhchhh
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHS-----SIEVRVNSAALIEIVLAGMRSQELRAQISNLDE  240 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~-----~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g  240 (418)
                      +.++...|+.+|.|+..+....|....+......+.+.+...     ...+...-.+.|.-|.  +...+.|..+....+
T Consensus       110 d~~vi~EslKCLcNlvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLfllt--ale~~~Rsql~~~l~  187 (532)
T KOG4464|consen  110 DMHVIMESLKCLCNLVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLT--ALETDHRSQLIAELL  187 (532)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHH--HhhHHHHHHHHHHhc
Confidence            567889999999999998878888888776666666655321     2344455566677775  566677887766678


Q ss_pred             hHHHHHHHhhcC
Q 014817          241 IFEGVIDILKNL  252 (418)
Q Consensus       241 ~i~~Lv~lL~~~  252 (418)
                      +++.+.++|++.
T Consensus       188 Gl~~lt~~led~  199 (532)
T KOG4464|consen  188 GLELLTNWLEDK  199 (532)
T ss_pred             ccHHHHHHhhcc
Confidence            999999999853

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=85.59  E-value=45  Score=34.57  Aligned_cols=158  Identities=14%  Similarity=0.079  Sum_probs=93.9

Q ss_pred             hhHHHHHHHHHhhhcChhhhhHHhh---cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCc
Q 014817          120 SRLSALRRLRGLARDSDKNRSLISS---HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADK  196 (418)
Q Consensus       120 ~~~~Al~~L~~l~~~~~~~~~~i~~---~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~  196 (418)
                      .+.-|+..||.+.+....+-..+-.   ...+..++..+..        .+.-+-.++++|.|+..+. .+++.+...  
T Consensus       560 ~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~~--------~~an~ll~vR~L~N~f~~~-~g~~~~~s~--  628 (745)
T KOG0301|consen  560 MMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILNA--------DPANQLLVVRCLANLFSNP-AGRELFMSR--  628 (745)
T ss_pred             HhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhccccc--------chhHHHHHHHHHHHhccCH-HHHHHHHHH--
Confidence            3577899999888765544443321   2345555555542        3456778899999988775 677777643  


Q ss_pred             hHHHHHHh---cCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCC---CChhhhHHHHHHHHHH
Q 014817          197 ITSLSSLL---FHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLS---SYPRGLKVGIKALFAL  269 (418)
Q Consensus       197 i~~Lv~~L---~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~~a~~aL~~L  269 (418)
                      ...+....   ++. +..++...+....|++- ....++-+     .|+.+.|...+....   .+-++.-.++.||.+|
T Consensus       629 ~~~i~~~~~~~~s~~~knl~ia~atlaln~sv-~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL  702 (745)
T KOG0301|consen  629 LESILDPVIEASSLSNKNLQIALATLALNYSV-LLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL  702 (745)
T ss_pred             HHHHhhhhhhhhcccchhHHHHHHHHHHHHHH-HHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence            22222222   223 35666655555555521 22222221     234444444443321   1345666788899999


Q ss_pred             ccccccHHHHHHcCchHHHHHHhcC
Q 014817          270 CLVKQTRYKAVAAGAAETLVDRLAD  294 (418)
Q Consensus       270 ~~~~~n~~~i~~~G~v~~Lv~lL~~  294 (418)
                      +..+.+..++...--|..++.-+++
T Consensus       703 ~t~~~~~~~~A~~~~v~sia~~~~~  727 (745)
T KOG0301|consen  703 MTVDASVIQLAKNRSVDSIAKKLKE  727 (745)
T ss_pred             ccccHHHHHHHHhcCHHHHHHHHHH
Confidence            9999888888887778888887764

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=85.38  E-value=0.17  Score=45.94  Aligned_cols=40  Identities=20%  Similarity=0.296  Sum_probs=31.1

Q ss_pred             cccCcCccccccCCeecCCCCcc-cHHHHHHHHHcCCCCCCCCCCC
Q 014817           17 HFRCPISLELMCDPVTVCTGQTY-DRPSIESWVATGNTTCPVTRSP   61 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~~~g~~~-~r~~i~~~~~~~~~~cp~~~~~   61 (418)
                      +.+|-||.+.-+|=|.++|||.. |-+|     -..-..||+|++.
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-----Gkrm~eCPICRqy  340 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKC-----GKRMNECPICRQY  340 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhh-----ccccccCchHHHH
Confidence            78999999999999999999965 4555     1113469999764

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.30  E-value=24  Score=37.64  Aligned_cols=211  Identities=16%  Similarity=0.051  Sum_probs=112.7

Q ss_pred             HHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHH-H
Q 014817          170 AHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVID-I  248 (418)
Q Consensus       170 ~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~-l  248 (418)
                      +-.++..|+.+.... .-...+...+++......|++.++-+--+|...+..|+   ..       .. ..++|-|.+ .
T Consensus       744 k~~gL~~l~~l~e~r-~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lc---ev-------y~-e~il~dL~e~Y  811 (982)
T KOG4653|consen  744 KGYGLQMLRHLIEKR-KKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLC---EV-------YP-EDILPDLSEEY  811 (982)
T ss_pred             hHHHHHHHHHHHHhc-chhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHH---Hh-------cc-hhhHHHHHHHH
Confidence            344444444443222 22233334566666677777776666666666666662   11       12 345666666 3


Q ss_pred             hhcCCC-ChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCC
Q 014817          249 LKNLSS-YPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALT  326 (418)
Q Consensus       249 L~~~~~-~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~  326 (418)
                      ...... .++.+-..-.++.++.... +-...-.+ -.+...+..+++++...+..+++.|.+|+.-...+-.=.-+ .+
T Consensus       812 ~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~~-ev  889 (982)
T KOG4653|consen  812 LSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFFH-EV  889 (982)
T ss_pred             HhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHHH-HH
Confidence            332210 1244444557777776442 22222212 34555566666777778899999999999543322111222 34


Q ss_pred             hHHHHHHHhc-CChHHHHHHHHHHHHHhcCCHHHHHHHHhc---ChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817          327 VPLLVKTILK-ISDRATEYAAGALAALCSASERCQRDAVSA---GVLTQLLLLVQSDCTDRAKRKAQLLLKL  394 (418)
Q Consensus       327 i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~---g~i~~L~~ll~~~~~~~~~~~A~~~L~~  394 (418)
                      +..++.+.+. ++..+++.|+..+..+=.+..+-...+..+   .....+..+...+.++..|-.|...+..
T Consensus       890 ~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~lee  961 (982)
T KOG4653|consen  890 LQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEE  961 (982)
T ss_pred             HHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            5666666655 788899999999888776555444333332   2333344444444355555555444433

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=84.41  E-value=24  Score=36.75  Aligned_cols=152  Identities=14%  Similarity=-0.003  Sum_probs=88.5

Q ss_pred             hhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc---cHHHHH---------HcCc----hHHHHHHhcCCCcccHHHH
Q 014817          240 EIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ---TRYKAV---------AAGA----AETLVDRLADFDKCDAERA  303 (418)
Q Consensus       240 g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~---n~~~i~---------~~G~----v~~Lv~lL~~~~~~~~~~a  303 (418)
                      |.+.-|+..+...-..+...+.-...|.+++.+..   ..+.+.         ..|.    ...++.+|.+.+--++-..
T Consensus       240 ~~~aeli~~isde~n~~~l~edi~~~l~~l~fn~~d~~Gpk~islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~  319 (1128)
T COG5098         240 GLIAELIPSISDELNRCALKEDIPVLLKNLSFNLPDLSGPKDISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCF  319 (1128)
T ss_pred             HHHHHHHHHhHHHhhhhhhhcccHHHHhhceeecccccChHHHHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHH
Confidence            44445555555432134566667777777776532   111111         1122    4567778877654444444


Q ss_pred             HHHHHHHhcCHhHHHHHHhc-----cCChHHHHHHHhcCChHHHHHHHHHHHHHhcC---CHHHHHHHHhcChHHHHHHH
Q 014817          304 LATVELLCRIPAGCAEFAEH-----ALTVPLLVKTILKISDRATEYAAGALAALCSA---SERCQRDAVSAGVLTQLLLL  375 (418)
Q Consensus       304 ~~~L~~L~~~~~~~~~i~~~-----~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~l  375 (418)
                      +.+..|+..+-....+++++     +..+..|++.+...++-++..|+..+..|+..   .+..|.+     ++....+-
T Consensus       320 ~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~e-----v~~lv~r~  394 (1128)
T COG5098         320 LEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHE-----VIRLVGRR  394 (1128)
T ss_pred             HHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHH-----HHHHHHHH
Confidence            55555555322111122221     13456677777779999999999999999872   2223333     45555666


Q ss_pred             HhhCCCHHHHHHHHHHHHHHHh
Q 014817          376 VQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       376 l~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      ++.. +..+|++|.+++.-|--
T Consensus       395 lqDr-ss~VRrnaikl~SkLL~  415 (1128)
T COG5098         395 LQDR-SSVVRRNAIKLCSKLLM  415 (1128)
T ss_pred             hhhh-hHHHHHHHHHHHHHHHh
Confidence            6677 88899999998877654

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.39  E-value=46  Score=37.94  Aligned_cols=225  Identities=11%  Similarity=0.044  Sum_probs=115.4

Q ss_pred             ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC-CCChhHHHhhcccCCchHHHHHHhcCCCH---------HH----
Q 014817          146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMF-PLTETECMEIASDADKITSLSSLLFHSSI---------EV----  211 (418)
Q Consensus       146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l-~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~---------~~----  211 (418)
                      .+....+++|.+.       ++-+|+.|..-|+.. ..++.+.++.+     +..|+.-|..|..         ++    
T Consensus       861 eI~~aF~~~Lsd~-------dEf~QDvAsrGlglVYelgd~~~k~~L-----V~sL~~tl~~Gkr~~~~vs~eTelFq~G  928 (1702)
T KOG0915|consen  861 EIQEAFSHLLSDN-------DEFSQDVASRGLGLVYELGDSSLKKSL-----VDSLVNTLTGGKRKAIKVSEETELFQEG  928 (1702)
T ss_pred             HHHHHHHHHhccc-------HHHHHHHHhcCceEEEecCCchhHHHH-----HHHHHHHHhccccccceeccchhcccCC
Confidence            3457788888776       356677776644421 12222334433     4455555533211         11    


Q ss_pred             ---------HHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHc
Q 014817          212 ---------RVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAA  282 (418)
Q Consensus       212 ---------~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~  282 (418)
                               ......=|.+|+         ..++. ...|..++++.++.. .-..+.-|+-=+..|+.....+.+=---
T Consensus       929 ~Lg~Tp~Gg~isTYKELc~LA---------Sdl~q-PdLVYKFM~LAnh~A-~wnSk~GaAfGf~~i~~~a~~kl~p~l~  997 (1702)
T KOG0915|consen  929 TLGKTPDGGKISTYKELCNLA---------SDLGQ-PDLVYKFMQLANHNA-TWNSKKGAAFGFGAIAKQAGEKLEPYLK  997 (1702)
T ss_pred             cCCCCCCCCcchHHHHHHHHH---------hhcCC-hHHHHHHHHHhhhhc-hhhcccchhhchHHHHHHHHHhhhhHHH
Confidence                     223333455552         12333 567788888887653 3333333333333343322111111111


Q ss_pred             CchHHHHHHhcCCCcccHHHHHHHHHHHhcCH-hHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHH--H
Q 014817          283 GAAETLVDRLADFDKCDAERALATVELLCRIP-AGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASER--C  359 (418)
Q Consensus       283 G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~--~  359 (418)
                      -.||.|.++=.+++..++.....+=..|..++ ........  ..+.-|+.-|.+..-++++.++.||..|-.+.+.  .
T Consensus       998 kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~n--eIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~ 1075 (1702)
T KOG0915|consen  998 KLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLN--EILDELLVNLTSKEWRVREASCLALADLLQGRPFDQV 1075 (1702)
T ss_pred             HhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHH--HHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHH
Confidence            25666666666777776555544444555542 33334333  2445566667777889999999999999985432  2


Q ss_pred             HHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          360 QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       360 ~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      .+.+-  ..-..+.+.++.= .+.+|++|-++.+-+++.
T Consensus      1076 ~e~lp--elw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl 1111 (1702)
T KOG0915|consen 1076 KEKLP--ELWEAAFRVMDDI-KESVREAADKAARALSKL 1111 (1702)
T ss_pred             HHHHH--HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence            22211  2222333333222 466777766666666553

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=83.65  E-value=0.34  Score=52.85  Aligned_cols=47  Identities=23%  Similarity=0.463  Sum_probs=39.2

Q ss_pred             CCCcccCcCcccccc-CCeecCCCCcccHHHHHHHHHcCCCCCCCCCCC
Q 014817           14 IPYHFRCPISLELMC-DPVTVCTGQTYDRPSIESWVATGNTTCPVTRSP   61 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~-dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~   61 (418)
                      +-..+.|+||+++++ -=.+.-|||.||..|++-|+.. +..||.|+..
T Consensus      1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICKSI 1197 (1394)
T ss_pred             hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchhhh
Confidence            344569999999999 5556689999999999999986 6789999743

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=83.60  E-value=59  Score=33.77  Aligned_cols=183  Identities=14%  Similarity=0.094  Sum_probs=97.0

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc---hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH
Q 014817          200 LSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN---LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR  276 (418)
Q Consensus       200 Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~---~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~  276 (418)
                      .++++...+.+.+--|..+|+.+   ..+...-..+..   ....+..++..+. .  ++.-+--++++|.|+..+..++
T Consensus       549 ~l~~l~~wp~~~~fPalDilRl~---v~h~~~~s~~~~~~~~~~~~~~li~~~~-~--~~an~ll~vR~L~N~f~~~~g~  622 (745)
T KOG0301|consen  549 ALAILLQWPVEMMFPALDILRLA---VKHHSSNSLFCDREEGQNLVGTLIPILN-A--DPANQLLVVRCLANLFSNPAGR  622 (745)
T ss_pred             HHHHHhcCCHHHhhhHHHHHHHH---HhccchhhhhhhhhhhhHHHHhhhcccc-c--chhHHHHHHHHHHHhccCHHHH
Confidence            44555566778888888888888   444433333322   1235555555555 3  5778888999999999997777


Q ss_pred             HHHHHcCchHHHHHHhc---C-CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-----CChHHHHHHHH
Q 014817          277 YKAVAAGAAETLVDRLA---D-FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-----ISDRATEYAAG  347 (418)
Q Consensus       277 ~~i~~~G~v~~Lv~lL~---~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-----~~~~~~~~A~~  347 (418)
                      ..+...  ...++..+.   + .+..++........|++-.   ..+-.++.|+.+.+...+..     .+-+..-..+.
T Consensus       623 ~~~~s~--~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~---l~~~~~~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~  697 (745)
T KOG0301|consen  623 ELFMSR--LESILDPVIEASSLSNKNLQIALATLALNYSVL---LIQDNEQLEGKEVLLSAISTLLEPVDDLEAIYRLLV  697 (745)
T ss_pred             HHHHHH--HHHHhhhhhhhhcccchhHHHHHHHHHHHHHHH---HHhcccccchHHHHHHHHHhhcccchhHHHHHHHHH
Confidence            766543  333333332   2 2233333222222333310   00000002445555555544     22223445566


Q ss_pred             HHHHHhcCCHHHHHHHHhcChHHHHHHHHhh-CCCHHHHHHHHHHHHH
Q 014817          348 ALAALCSASERCQRDAVSAGVLTQLLLLVQS-DCTDRAKRKAQLLLKL  394 (418)
Q Consensus       348 ~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L~~  394 (418)
                      ||.+|+..++..++.....++ ..+..-+.. ...+..+.-|..+++.
T Consensus       698 AlgtL~t~~~~~~~~A~~~~v-~sia~~~~~~~~~~~~k~~a~~il~~  744 (745)
T KOG0301|consen  698 ALGTLMTVDASVIQLAKNRSV-DSIAKKLKEAVSNPSGKNIARDILSL  744 (745)
T ss_pred             HHHhhccccHHHHHHHHhcCH-HHHHHHHHHhccCchhhHHHHHHHhc
Confidence            667777766666665555554 444555543 3356666666665553

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.05  E-value=32  Score=38.01  Aligned_cols=184  Identities=15%  Similarity=0.153  Sum_probs=97.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHhcccchhhhhHhhch-hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHHHHc
Q 014817          205 FHSSIEVRVNSAALIEIVLAGMRSQELRAQISNL-DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKAVAA  282 (418)
Q Consensus       205 ~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~  282 (418)
                      ++.+..+|..+-.+|..++   ..+......... .-+...|..-+++.  ...++...+.+|..|-.... .-..++..
T Consensus       664 ~~~~~~vQkK~yrlL~~l~---~~~s~~~~~~q~i~~I~n~L~ds~qs~--~~~~~~~rl~~L~~L~~~~~~e~~~~i~k  738 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELS---SSPSGEGLVEQRIDDIFNSLLDSFQSS--SSPAQASRLKCLKRLLKLLSAEHCDLIPK  738 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHh---cCCchhhHHHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            3457899999999999994   333322222111 12444555555555  56677777777777764433 22222333


Q ss_pred             CchHHHHHHhcCCCcccHHHHHHHHHHHhc----CHhHHHHHHhccCChHHHHHHHhcC--ChHHHHHH--HHHHHHHhc
Q 014817          283 GAAETLVDRLADFDKCDAERALATVELLCR----IPAGCAEFAEHALTVPLLVKTILKI--SDRATEYA--AGALAALCS  354 (418)
Q Consensus       283 G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~----~~~~~~~i~~~~g~i~~Lv~~l~~~--~~~~~~~A--~~~L~~l~~  354 (418)
                      -+.+.++.+ ...+......+..+|..++.    .+.+.+.  . ...|..++..+..+  +......|  +-++..+..
T Consensus       739 ~I~EvIL~~-Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~--~-~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~  814 (1176)
T KOG1248|consen  739 LIPEVILSL-KEVNVKARRNAFALLVFIGAIQSSLDDGNEP--A-SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQ  814 (1176)
T ss_pred             HHHHHHHhc-ccccHHHHhhHHHHHHHHHHHHhhhcccccc--h-HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHH
Confidence            233333333 66677777888888887773    1111111  0 01344455544442  22222222  333344443


Q ss_pred             CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          355 ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       355 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      ..........-.+++..+...|.++ ++.+++.|...++.+.-.
T Consensus       815 e~~~~ld~~~l~~li~~V~~~L~s~-sreI~kaAI~fikvlv~~  857 (1176)
T KOG1248|consen  815 EFKNILDDETLEKLISMVCLYLASN-SREIAKAAIGFIKVLVYK  857 (1176)
T ss_pred             HHhccccHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHc
Confidence            2222222222234555555566566 999999999999988754

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=82.98  E-value=15  Score=40.35  Aligned_cols=141  Identities=14%  Similarity=0.049  Sum_probs=102.3

Q ss_pred             chHHHHHHhcC----CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817          196 KITSLSSLLFH----SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL  271 (418)
Q Consensus       196 ~i~~Lv~~L~~----~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~  271 (418)
                      ..|.+++..+.    ++++++..|.-+|..|.  ....    .+..  .-+|.|+.++...+ ++.++.++..++..|+.
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM--~iSa----~fce--s~l~llftimeksp-~p~IRsN~VvalgDlav  990 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLM--CISA----EFCE--SHLPLLFTIMEKSP-SPRIRSNLVVALGDLAV  990 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHh--hhhH----HHHH--HHHHHHHHHHhcCC-Cceeeecchheccchhh
Confidence            45666666643    47999999999999994  2222    3433  35899999999654 89999999999999987


Q ss_pred             ccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 014817          272 VKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAA  351 (418)
Q Consensus       272 ~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~  351 (418)
                      .-.|-..-    --+.|...|.+.+..+++.|+-+|.+|...+-    +.. .|-+.-+..+|-++++.++.-|-.-...
T Consensus       991 ~fpnlie~----~T~~Ly~rL~D~~~~vRkta~lvlshLILndm----iKV-KGql~eMA~cl~D~~~~IsdlAk~FF~E 1061 (1251)
T KOG0414|consen  991 RFPNLIEP----WTEHLYRRLRDESPSVRKTALLVLSHLILNDM----IKV-KGQLSEMALCLEDPNAEISDLAKSFFKE 1061 (1251)
T ss_pred             hcccccch----hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh----hHh-cccHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence            66553222    33456777778889999999999999886332    222 4888888888888888888777744444


Q ss_pred             Hhc
Q 014817          352 LCS  354 (418)
Q Consensus       352 l~~  354 (418)
                      |+.
T Consensus      1062 ls~ 1064 (1251)
T KOG0414|consen 1062 LSS 1064 (1251)
T ss_pred             hhh
Confidence            444

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=82.85  E-value=35  Score=32.68  Aligned_cols=158  Identities=16%  Similarity=0.160  Sum_probs=106.2

Q ss_pred             HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC-ChhHHHhhcc-cCC-chHHHHHHhcCC----C---------HHH
Q 014817          148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPL-TETECMEIAS-DAD-KITSLSSLLFHS----S---------IEV  211 (418)
Q Consensus       148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~-~~~~~~~~i~-~~g-~i~~Lv~~L~~~----~---------~~~  211 (418)
                      +..+-+.|++.       ...+...++..|..+.. +.....+.+. .-+ -.+.+.+++...    .         +.+
T Consensus        58 ~k~lyr~L~~~-------~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~si  130 (330)
T PF11707_consen   58 LKLLYRSLSSS-------KPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSI  130 (330)
T ss_pred             HHHHHHHhCcC-------cHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCH
Confidence            55666677665       35566778888887765 4423333333 322 234555555321    1         288


Q ss_pred             HHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHH-Hcccc----ccHHHHHHcCchH
Q 014817          212 RVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFA-LCLVK----QTRYKAVAAGAAE  286 (418)
Q Consensus       212 ~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~-L~~~~----~n~~~i~~~G~v~  286 (418)
                      |......+..+.+ ..+...+..+-...+.+..+.+-|..+  ++++....+.+|.. +....    ..|..+.....+.
T Consensus       131 R~~fI~F~Lsfl~-~~~~~~~~~lL~~~~~~~~l~k~l~~D--~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~  207 (330)
T PF11707_consen  131 RTNFIRFWLSFLS-SGDPELKRDLLSQKKLMSALFKGLRKD--PPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLS  207 (330)
T ss_pred             HHHHHHHHHHHHc-cCCHHHHHHHHHcCchHHHHHhcccCC--CHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHH
Confidence            8888888888764 446666666655567888899888887  78999999999985 44333    2556666777899


Q ss_pred             HHHHHhcCCCc----ccHHHHHHHHHHHhcCHh
Q 014817          287 TLVDRLADFDK----CDAERALATVELLCRIPA  315 (418)
Q Consensus       287 ~Lv~lL~~~~~----~~~~~a~~~L~~L~~~~~  315 (418)
                      .|..+-...+.    .+.+.+-..|..+|.++.
T Consensus       208 ~l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  208 QLASLYSRDGEDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             HHHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence            99997765555    778889999999996443

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=82.59  E-value=13  Score=39.80  Aligned_cols=153  Identities=14%  Similarity=0.027  Sum_probs=95.6

Q ss_pred             hhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH--cCchHHHHHHhcCCCcccHHHHHHHHH
Q 014817          231 LRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA--AGAAETLVDRLADFDKCDAERALATVE  308 (418)
Q Consensus       231 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~--~G~v~~Lv~lL~~~~~~~~~~a~~~L~  308 (418)
                      +|+.+..  .++|.|+....+.  ....+..-+.+|.++-.+-.- ..+..  ...+|.|++.|.-+|..++-.++.++.
T Consensus       860 ykQRfF~--~ivP~l~~~~~t~--~~~~K~~yl~~LshVl~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~  934 (1030)
T KOG1967|consen  860 YKQRFFC--DIVPILVSKFETA--PGSQKHNYLEALSHVLTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIP  934 (1030)
T ss_pred             HHHHHHH--hhHHHHHHHhccC--CccchhHHHHHHHHHHhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhh
Confidence            3455543  4789999988855  456777788888887664332 22222  457888889998888888888888887


Q ss_pred             HHhcCHh-HHHHHHhccCChHHHHHHHhcCC---hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHH
Q 014817          309 LLCRIPA-GCAEFAEHALTVPLLVKTILKIS---DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRA  384 (418)
Q Consensus       309 ~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~~---~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  384 (418)
                      .+....+ -...-+.  -.+|.++.+=++.+   ..+++-|+.+|..|...-|...-.-..-.++..|...|.+. -..+
T Consensus       935 ~~l~~~~tL~t~~~~--Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDk-KRlV 1011 (1030)
T KOG1967|consen  935 MLLTESETLQTEHLS--TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDK-KRLV 1011 (1030)
T ss_pred             HHHHhccccchHHHh--HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcH-HHHH
Confidence            6663222 2222221  24455554333322   56899999999999985554433333445677777777444 4445


Q ss_pred             HHHHHHH
Q 014817          385 KRKAQLL  391 (418)
Q Consensus       385 ~~~A~~~  391 (418)
                      |+.|..+
T Consensus      1012 R~eAv~t 1018 (1030)
T KOG1967|consen 1012 RKEAVDT 1018 (1030)
T ss_pred             HHHHHHH
Confidence            6666543

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=82.49  E-value=19  Score=38.80  Aligned_cols=173  Identities=16%  Similarity=0.151  Sum_probs=110.9

Q ss_pred             chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc--cC
Q 014817          117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIAS--DA  194 (418)
Q Consensus       117 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~--~~  194 (418)
                      +.+.+.+|+..+...+++.. ........|.+-.++.....+.      |..+.-.|+..|..++..-   |....  ..
T Consensus       266 ~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDa------N~~v~~~aa~~l~~ia~~l---r~~~~~~~~  335 (815)
T KOG1820|consen  266 KWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDA------NINVVMLAAQILELIAKKL---RPLFRKYAK  335 (815)
T ss_pred             chHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCc------chhHHHHHHHHHHHHHHhc---chhhHHHHH
Confidence            56678899999998886543 1122222455555666655553      5667777777777776533   22221  24


Q ss_pred             CchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc-c
Q 014817          195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV-K  273 (418)
Q Consensus       195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~-~  273 (418)
                      +..+.+..-+..-...++..+..++...   ..       .......++.....+.++  ++..+......+...... +
T Consensus       336 ~v~p~lld~lkekk~~l~d~l~~~~d~~---~n-------s~~l~~~~~~I~e~lk~k--np~~k~~~~~~l~r~~~~~~  403 (815)
T KOG1820|consen  336 NVFPSLLDRLKEKKSELRDALLKALDAI---LN-------STPLSKMSEAILEALKGK--NPQIKGECLLLLDRKLRKLG  403 (815)
T ss_pred             hhcchHHHHhhhccHHHHHHHHHHHHHH---Hh-------cccHHHHHHHHHHHhcCC--ChhhHHHHHHHHHHHHhhcC
Confidence            6678888888777888888877777777   22       111134677888889988  888888766666555433 2


Q ss_pred             -ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817          274 -QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC  311 (418)
Q Consensus       274 -~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~  311 (418)
                       .+...-.-.+.+|.++....+.+..++..+..++..+.
T Consensus       404 ~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~  442 (815)
T KOG1820|consen  404 PKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM  442 (815)
T ss_pred             CcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence             22222233457777788877778888888777776554

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=82.39  E-value=15  Score=28.26  Aligned_cols=72  Identities=7%  Similarity=-0.046  Sum_probs=54.3

Q ss_pred             hhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHH
Q 014817          235 ISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVE  308 (418)
Q Consensus       235 i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~  308 (418)
                      +....+.+..|++..+..  .......++..|..|..++.....+.+-|++..|-++=..-++..+...-.++.
T Consensus        25 l~~~~~Ll~~LleWFnf~--~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr~~~~~~~~~~id~il~   96 (98)
T PF14726_consen   25 LVKERLLLKQLLEWFNFP--PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLRPNVEPNLQAEIDEILD   96 (98)
T ss_pred             HccHHHHHHHHHHHhCCC--CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence            334456888899998888  667888999999999999999999999999999666655444555554444443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=82.27  E-value=21  Score=37.92  Aligned_cols=177  Identities=14%  Similarity=0.095  Sum_probs=106.5

Q ss_pred             HHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchH--HHHHHh
Q 014817          127 RLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKIT--SLSSLL  204 (418)
Q Consensus       127 ~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~--~Lv~~L  204 (418)
                      .|.....+++.+.+.+.+.|++..+...+..-+      +.+++..++..|.+++... +.+........+.  .+-.++
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~------~~~~~~~il~~l~n~~~~~-~~~~~~~~~~~~~~~~f~~~~  566 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFD------NEELHRKILGLLGNLAEVL-ELRELLMIFEFIDFSVFKVLL  566 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhcc------chhHHHHHHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHHHH
Confidence            666888889999999999999999999998664      5789999999999988655 3444333222222  233344


Q ss_pred             cCCCH-HHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcC
Q 014817          205 FHSSI-EVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAG  283 (418)
Q Consensus       205 ~~~~~-~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G  283 (418)
                      ...+. +.-..++.+|..+.  +..++ ....+...-+-..+++.....                    ......+.-..
T Consensus       567 ~~w~~~ersY~~~siLa~ll--~~~~~-~~~~~~r~~~~~~l~e~i~~~--------------------~~~~~~~~~~~  623 (699)
T KOG3665|consen  567 NKWDSIERSYNAASILALLL--SDSEK-TTECVFRNSVNELLVEAISRW--------------------LTSEIRVINDR  623 (699)
T ss_pred             hhcchhhHHHHHHHHHHHHH--hCCCc-CccccchHHHHHHHHHHhhcc--------------------Cccceeehhhh
Confidence            44444 66677888888885  32222 111111111222233332222                    11122222222


Q ss_pred             chHH-HHHHhc-CCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHH
Q 014817          284 AAET-LVDRLA-DFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTI  334 (418)
Q Consensus       284 ~v~~-Lv~lL~-~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l  334 (418)
                      -+.+ +..++. +..+..+-.|++++.++.. ++++.+.+.+. |+++.+.+.-
T Consensus       624 ~f~~~~~~il~~s~~~g~~lWal~ti~~~~~~~~~~~~~~~~~-~~~~~~~~~~  676 (699)
T KOG3665|consen  624 SFFPRILRILRLSKSDGSQLWALWTIKNVLEQNKEYCKLVRES-NGFELIENIR  676 (699)
T ss_pred             hcchhHHHHhcccCCCchHHHHHHHHHHHHHcChhhhhhhHhc-cchhhhhhcc
Confidence            3333 455554 3356778899999999985 45666666664 8777777654

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.22  E-value=12  Score=34.93  Aligned_cols=139  Identities=15%  Similarity=0.082  Sum_probs=90.2

Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc
Q 014817          196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT  275 (418)
Q Consensus       196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n  275 (418)
                      ++...+..|.+.+.+.+..+...|+-|+  ..+.+.....-  ..+|-.+++-+++.  ...+.+.|+.++..+.+.-.+
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs--~fh~e~l~~~L--~~vii~vvkslKNl--RS~VsraA~~t~~difs~ln~  162 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLS--EFHPESLNPML--HEVIIAVVKSLKNL--RSAVSRAACMTLADIFSSLNN  162 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHH--hhhHHHHHHHH--HHHHHHHHHHhcCh--HHHHHHHHHHHHHHHHHHHHH
Confidence            3555667777777888888888888884  34443333332  34777788888887  678999999999999877554


Q ss_pred             HHHHHHcCchHHHHHHhc----CCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 014817          276 RYKAVAAGAAETLVDRLA----DFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAA  351 (418)
Q Consensus       276 ~~~i~~~G~v~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~  351 (418)
                      ...-    .+..++..|.    ..+.-+.+.|..+|..+..+-. .+      -+++.|...+.+.++.++..++....+
T Consensus       163 ~i~~----~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vt-p~------~~L~~L~~~~~~~n~r~r~~a~~~~~~  231 (334)
T KOG2933|consen  163 SIDQ----ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVT-PQ------KLLRKLIPILQHSNPRVRAKAALCFSR  231 (334)
T ss_pred             HHHH----HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccC-hH------HHHHHHHHHHhhhchhhhhhhhccccc
Confidence            4332    3444444442    2234578888888887774321 11      234456666777888888777765544

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=82.20  E-value=20  Score=37.31  Aligned_cols=132  Identities=12%  Similarity=0.004  Sum_probs=89.4

Q ss_pred             hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc-CCCcccHHHHHHHHHHHhcCHhHH
Q 014817          239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA-DFDKCDAERALATVELLCRIPAGC  317 (418)
Q Consensus       239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~  317 (418)
                      ..++|.|..-+++.  +..+++.++..+-..+..-+  ...++.-++|.|-.+-. +.+..++.+++.++..+. ..-.+
T Consensus       388 ~~IlplL~~S~~~~--~~~iQ~~~L~~lptv~e~iD--~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~-q~lD~  462 (700)
T KOG2137|consen  388 EKILPLLYRSLEDS--DVQIQELALQILPTVAESID--VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLI-QRLDK  462 (700)
T ss_pred             HHHHHHHHHHhcCc--chhhHHHHHHhhhHHHHhcc--HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHH-HHHHH
Confidence            34778888888877  78999999999998886655  55566667888777643 445677888888888888 23334


Q ss_pred             HHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC
Q 014817          318 AEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD  379 (418)
Q Consensus       318 ~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~  379 (418)
                      ..+++.   +.++.+.+...++.+.-..+.+..++...... .+++.-+.+++.++-+.-.+
T Consensus       463 ~~v~d~---~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~-g~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  463 AAVLDE---LLPILKCIKTRDPAIVMGFLRIYEALALIIYS-GVEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             HHhHHH---HHHHHHHhcCCCcHHHHHHHHHHHHHHhhccc-ceeeehhhhhhhhhhhhhcc
Confidence            444443   56666667677888877777776666652111 14455566777776665433

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=82.03  E-value=5.6  Score=31.93  Aligned_cols=72  Identities=14%  Similarity=0.203  Sum_probs=53.5

Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhc-ChHHHHHHHHhh----C---CCHHHHHHHHHHHHHHHh
Q 014817          327 VPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSA-GVLTQLLLLVQS----D---CTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       327 i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~-g~i~~L~~ll~~----~---~~~~~~~~A~~~L~~l~~  397 (418)
                      +..|.+.|.+.++.++..|+.+|..+|. |++.++..+.+. .+|..+..+-..    .   .+..+|..|..++..+-.
T Consensus        40 ~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if~  119 (122)
T cd03572          40 LEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIFS  119 (122)
T ss_pred             HHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHhc
Confidence            4468888888899999999999999998 888888877763 455555444321    1   136789999999988765


Q ss_pred             h
Q 014817          398 S  398 (418)
Q Consensus       398 ~  398 (418)
                      .
T Consensus       120 ~  120 (122)
T cd03572         120 Y  120 (122)
T ss_pred             c
Confidence            4

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=81.33  E-value=16  Score=39.37  Aligned_cols=112  Identities=17%  Similarity=0.101  Sum_probs=78.8

Q ss_pred             hhhHHHHHHHhh------cCCCChhhhHHHHHHHHHHccc---cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHH
Q 014817          239 DEIFEGVIDILK------NLSSYPRGLKVGIKALFALCLV---KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVEL  309 (418)
Q Consensus       239 ~g~i~~Lv~lL~------~~~~~~~~~~~a~~aL~~L~~~---~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~  309 (418)
                      .|.++.++.++.      ....++....-|++++.+|+..   ++--+...+.=.++.+...++++..-++..|++++..
T Consensus       409 ~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  409 PKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQ  488 (1010)
T ss_pred             hhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence            678899999987      2222566777899999999843   1222344566677777888888888899999999999


Q ss_pred             Hhc----CHhHHHHHHhccCChHHHHHHHh-cCChHHHHHHHHHHHHHhcCC
Q 014817          310 LCR----IPAGCAEFAEHALTVPLLVKTIL-KISDRATEYAAGALAALCSAS  356 (418)
Q Consensus       310 L~~----~~~~~~~i~~~~g~i~~Lv~~l~-~~~~~~~~~A~~~L~~l~~~~  356 (418)
                      .+.    ++.+-..+      +....+.|. +.+..++-.|+-||..+-...
T Consensus       489 ~~~~df~d~~~l~~a------le~t~~~l~~d~~lPV~VeAalALq~fI~~~  534 (1010)
T KOG1991|consen  489 FSSIDFKDPNNLSEA------LELTHNCLLNDNELPVRVEAALALQSFISNQ  534 (1010)
T ss_pred             HHhccCCChHHHHHH------HHHHHHHhccCCcCchhhHHHHHHHHHHhcc
Confidence            993    33333333      445666666 466678888888888877633

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=81.19  E-value=1.9  Score=41.46  Aligned_cols=44  Identities=16%  Similarity=0.356  Sum_probs=32.4

Q ss_pred             cccCcCccccccC---CeecCCCCcccHHHHHHHHHc----C---CCCCCCCCC
Q 014817           17 HFRCPISLELMCD---PVTVCTGQTYDRPSIESWVAT----G---NTTCPVTRS   60 (418)
Q Consensus        17 ~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~----~---~~~cp~~~~   60 (418)
                      -|.|-||.+..--   =+.+||+|.||+.|...++.-    |   .-.||.++-
T Consensus       184 lf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  184 LFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             cccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            3789999887654   346799999999999999752    2   224776553

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.71  E-value=13  Score=36.99  Aligned_cols=140  Identities=11%  Similarity=0.007  Sum_probs=78.6

Q ss_pred             ChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC-CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHH
Q 014817          255 YPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF-DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKT  333 (418)
Q Consensus       255 ~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~  333 (418)
                      +...+..|++.|.|.+..-..+.+--..-.+..++.-|.++ +.+++-.++.+|..+...-.++.-.----.+...+..+
T Consensus       271 ~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l  350 (533)
T KOG2032|consen  271 SAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTL  350 (533)
T ss_pred             hhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHH
Confidence            55778899999999998733222222233556666666544 46777777777776664333332211000122344444


Q ss_pred             HhcCChHHHHHHHHHHHHHhc---CCH--HHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          334 ILKISDRATEYAAGALAALCS---ASE--RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       334 l~~~~~~~~~~A~~~L~~l~~---~~~--~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      ..+.++.++-.|......|+.   +.-  .....+ .. ...+|+..|+.. ++.+-+++...++.+..
T Consensus       351 ~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v-~k-~~~~lllhl~d~-~p~va~ACr~~~~~c~p  416 (533)
T KOG2032|consen  351 FDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQV-KK-RLAPLLLHLQDP-NPYVARACRSELRTCYP  416 (533)
T ss_pred             HHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHH-Hh-ccccceeeeCCC-ChHHHHHHHHHHHhcCc
Confidence            555788888888877777665   221  122222 22 223444556555 77666676666665544

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=80.70  E-value=1.7  Score=40.73  Aligned_cols=60  Identities=15%  Similarity=0.326  Sum_probs=45.5

Q ss_pred             CCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 014817           14 IPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDW   80 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~   80 (418)
                      ..+-+-||+|.+.|.-|+.= ..||.-|-.|=.+    -...||.|+.++.+   +.+.++...++..
T Consensus        45 ~~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~----~~~~CP~Cr~~~g~---~R~~amEkV~e~~  105 (299)
T KOG3002|consen   45 DLDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK----VSNKCPTCRLPIGN---IRCRAMEKVAEAV  105 (299)
T ss_pred             chhhccCchhhccCcccceecCCCcEehhhhhhh----hcccCCcccccccc---HHHHHHHHHHHhc
Confidence            44557999999999999976 5799999888432    35679999988762   2566777776664

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=80.66  E-value=58  Score=31.64  Aligned_cols=234  Identities=18%  Similarity=0.038  Sum_probs=122.0

Q ss_pred             HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcc
Q 014817          148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGM  226 (418)
Q Consensus       148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s  226 (418)
                      +.-+++=|.+..      ...++..++--|..-+.+. +.+..+..+|.+..+++.+.. ++......++.++..+.  +
T Consensus        23 v~ylld~l~~~~------~~s~Rr~sll~La~K~~~~-~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l--~   93 (361)
T PF07814_consen   23 VEYLLDGLESSS------SSSVRRSSLLELASKCADP-QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVL--S   93 (361)
T ss_pred             HHHHHhhcccCC------CccHHHHHHHHHHHHhCCH-HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHH--c
Confidence            445555555222      4567888777777666666 789999999999999999944 34435555555555553  4


Q ss_pred             cchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc---------CCCc
Q 014817          227 RSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA---------DFDK  297 (418)
Q Consensus       227 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~---------~~~~  297 (418)
                      .+..+-..+ ...+.+..++.++.-.. .........      .....+..++. .+.+..+...+.         ....
T Consensus        94 ~d~~~~~l~-~~~~~~~ll~~Ll~~~~-~~~~~~~~~------~~~~~~lsk~~-~~~~~~~~~~~~~~~~~~~~~~~~l  164 (361)
T PF07814_consen   94 RDGLNMHLL-LDRDSLRLLLKLLKVDK-SLDVPSDSD------SSRKKNLSKVQ-QKSRSLCKELLSSGSSWKSPKPPEL  164 (361)
T ss_pred             cCCcchhhh-hchhHHHHHHHHhcccc-ccccccchh------hhhhhhhhHHH-HHHHHHHHHHHhccccccccCCccc
Confidence            444433333 33456677788877110 000000000      00111111111 112222222221         1112


Q ss_pred             ccHHHHHHHHHHHh---------------cCHhHHHHHHhccCChHHHHHHHhc----C------------ChHHHHHHH
Q 014817          298 CDAERALATVELLC---------------RIPAGCAEFAEHALTVPLLVKTILK----I------------SDRATEYAA  346 (418)
Q Consensus       298 ~~~~~a~~~L~~L~---------------~~~~~~~~i~~~~g~i~~Lv~~l~~----~------------~~~~~~~A~  346 (418)
                      .-+..++.+|..++               ..+.-++++... |++..++..+..    .            +...-+.+.
T Consensus       165 sp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~l-g~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl  243 (361)
T PF07814_consen  165 SPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELREL-GGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCL  243 (361)
T ss_pred             ccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhH-HHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHH
Confidence            23345666666663               112346677775 889999999862    1            112236788


Q ss_pred             HHHHHHhcCCHHHHHHHHh--cChHHHHHHHHhhCCCHHH---HHHHHHHHHHHHhhCC
Q 014817          347 GALAALCSASERCQRDAVS--AGVLTQLLLLVQSDCTDRA---KRKAQLLLKLLRDSWP  400 (418)
Q Consensus       347 ~~L~~l~~~~~~~~~~~~~--~g~i~~L~~ll~~~~~~~~---~~~A~~~L~~l~~~~~  400 (418)
                      ++|-+.+..+++++.....  .+.+..+...+-..+.+..   ...+.+++-|++.+..
T Consensus       244 ~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n~  302 (361)
T PF07814_consen  244 SILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNNP  302 (361)
T ss_pred             HHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCCc
Confidence            8888877755555444443  2344444444333323333   3456666667776653

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=80.41  E-value=0.62  Score=36.40  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=27.6

Q ss_pred             CCCCCcccCcCccccccCCeec--CCCCcccHHHHH
Q 014817           12 VQIPYHFRCPISLELMCDPVTV--CTGQTYDRPSIE   45 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~~~dPv~~--~~g~~~~r~~i~   45 (418)
                      ..+.++-.|++|++.+.+++..  ||||.|-..|+.
T Consensus        73 v~i~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   73 VVITESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             EEECCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence            3556677899999999988744  999999888864

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	418
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		2e-17
2f42_A	179	Dimerization And U-Box Domains Of Zebrafish C-Termi		4e-07
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		8e-07
2oxq_C	80	Structure Of The Ubch5 :chip U-Box Complex Length =		9e-07
2c2v_S	78	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		2e-06

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 87.0 bits (214), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 39/74 (52%), Positives = 50/74 (67%)
Query: 11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN 70
          S + P +FRCPISLELM DPV V TGQTY+R SI+ W+  G+ TCP ++  L    L PN
Sbjct: 2  SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61
Query: 71 HTLRRLIQDWCVAN 84
          + L+ LI  WC +N
Sbjct: 62 YVLKSLIALWCESN 75

>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179

Iteration: 1
 Score = 52.8 bits (125), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 13  QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHT 72
           +IP +    IS ELM +P    +G TYDR  IE  +       PVTRSPLT   LIPN  
Sbjct: 102 EIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA 161
Query: 73  LRRLIQDWCVAN 84
           ++ +I  +   N
Sbjct: 162 MKEVIDAFIQEN 173

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 51.6 bits (122), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 37/71 (52%)
Query: 14  IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTL 73
           IP +    IS ELM +P    +G TYDR  IE  +       PVTRSPLT   LIPN  +
Sbjct: 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 264
Query: 74  RRLIQDWCVAN 84
           + +I  +   N
Sbjct: 265 KEVIDAFISEN 275

>pdb|2OXQ|C Chain C, Structure Of The Ubch5 :chip U-Box Complex Length = 80

Iteration: 1
 Score = 51.6 bits (122), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 29/72 (40%), Positives = 38/72 (52%)
Query: 13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHT 72
          +IP +    IS ELM +P    +G TYDR  IE  +       PVTRSPLT   LIPN  
Sbjct: 9  EIPDYLCGKISFELMAEPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLA 68
Query: 73 LRRLIQDWCVAN 84
          ++ +I  +   N
Sbjct: 69 MKEVIDAFIQEN 80

>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 37/71 (52%)
Query: 14 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTL 73
          IP +    IS ELM +P    +G TYDR  IE  +       PVTRSPLT   LIPN  +
Sbjct: 2  IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 61
Query: 74 RRLIQDWCVAN 84
          + +I  +   N
Sbjct: 62 KEVIDAFISEN 72

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	418
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	1e-41
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	4e-39
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	1e-34
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	3e-33
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	4e-30
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	9e-23
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	3e-20
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-19
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	5e-14
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-12
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	6e-10
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	4e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-07
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-05
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	6e-12
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	5e-04
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	1e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-11
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-09
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-08
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	7e-08
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	5e-07
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-05
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-11
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-09
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	4e-08
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-07
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-05
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	6e-05
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-10
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	7e-06
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	4e-04
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-09
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-06
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	1e-06
3nmz_A	458	APC variant protein; protein-protein complex, arma	2e-09
3nmz_A	458	APC variant protein; protein-protein complex, arma	4e-05
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	1e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	3e-08
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	8e-08
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	6e-05
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-05
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-07
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	4e-07
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	5e-07
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	1e-06
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	2e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	3e-06
1z6u_A	150	NP95-like ring finger protein isoform B; structura	3e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	5e-06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	6e-06
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	8e-06
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	1e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	1e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-05
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	5e-05
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	8e-05
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	9e-05
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	1e-04
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	3e-04
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	3e-04

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  140 bits (355), Expect = 1e-41
 Identities = 40/80 (50%), Positives = 53/80 (66%), Gaps = 3/80 (3%)

Query: 11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN 70
          S + P +FRCPISLELM DPV V TGQTY+R SI+ W+  G+ TCP ++  L    L PN
Sbjct: 2  SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61

Query: 71 HTLRRLIQDWCVANRSFGVQ 90
          + L+ LI  WC +N   G++
Sbjct: 62 YVLKSLIALWCESN---GIE 78

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  137 bits (347), Expect = 4e-39
 Identities = 29/84 (34%), Positives = 41/84 (48%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60
           +   ++      +IP +    IS ELM +P    +G TYDR  IE  +       PVTRS
Sbjct: 90  LFSQVDEKRKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRS 149

Query: 61  PLTDFTLIPNHTLRRLIQDWCVAN 84
           PLT   LIPN  ++ +I  +   N
Sbjct: 150 PLTQDQLIPNLAMKEVIDAFIQEN 173

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  122 bits (308), Expect = 1e-34
 Identities = 31/85 (36%), Positives = 39/85 (45%), Gaps = 3/85 (3%)

Query: 2  PGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSP 61
          PGS E +D S   P  FR P+   LM DPV + +G   DR  I   +     T P  R  
Sbjct: 1  PGSAE-IDYS-DAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP-TDPFNRQM 57

Query: 62 LTDFTLIPNHTLRRLIQDWCVANRS 86
          LT+  L P   L+  IQ W    +S
Sbjct: 58 LTESMLEPVPELKEQIQAWMREKQS 82

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score =  119 bits (300), Expect = 3e-33
 Identities = 24/74 (32%), Positives = 32/74 (43%), Gaps = 1/74 (1%)

Query: 13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHT 72
            P  FR P+   LM DPV + +G   DR  I   +     T P  R  LT+  L P   
Sbjct: 25 DAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP-TDPFNRQTLTESMLEPVPE 83

Query: 73 LRRLIQDWCVANRS 86
          L+  IQ W    ++
Sbjct: 84 LKEQIQAWMREKQN 97

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score =  111 bits (278), Expect = 4e-30
 Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 2/79 (2%)

Query: 9  DLSVQIPYHFRCPISLELMCDPVTVCTGQ-TYDRPSIESWVATGNTTCPVTRSPLTDFTL 67
          +        F  PI   LMCDPV + + + T DR +I   + +  T  P  RSPLT   +
Sbjct: 14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQT-DPFNRSPLTMDQI 72

Query: 68 IPNHTLRRLIQDWCVANRS 86
           PN  L+  IQ W    + 
Sbjct: 73 RPNTELKEKIQRWLAERKQ 91

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score =  100 bits (249), Expect = 9e-23
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 2/77 (2%)

Query: 11  SVQIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIP 69
              +P  F  P+   +M DPV +  +    DR +I++ + + +T  P  R PL    + P
Sbjct: 885 YGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDST-DPFNRMPLKLEDVTP 943

Query: 70  NHTLRRLIQDWCVANRS 86
           N  LR+ I  +    + 
Sbjct: 944 NEELRQKILCFKKQKKE 960

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 83.9 bits (207), Expect = 3e-20
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 9/82 (10%)

Query: 13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVAT-----GNTTCPVT---RSPLT 63
               F CPI+ E M  PV     G TY+  +I   + +         CP      + + 
Sbjct: 3  SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62

Query: 64 DFTLIPNHTLRRLIQDWCVANR 85
             LI +  LRR I++      
Sbjct: 63 KSDLIQDEALRRAIENHNKKRH 84

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 86.5 bits (214), Expect = 2e-19
 Identities = 29/79 (36%), Positives = 38/79 (48%)

Query: 6   EPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF 65
           +       IP +    IS ELM +P    +G TYDR  IE  +       PVTRSPLT  
Sbjct: 197 DEKRKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE 256

Query: 66  TLIPNHTLRRLIQDWCVAN 84
            LIPN  ++ +I  +   N
Sbjct: 257 QLIPNLAMKEVIDAFISEN 275

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 65.5 bits (160), Expect = 5e-14
 Identities = 12/57 (21%), Positives = 25/57 (43%), Gaps = 2/57 (3%)

Query: 17 HFRCPISLELMCDPV-TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHT 72
          H  C IS ++   PV +  +   +++  +E +V       P+T  PL+   ++    
Sbjct: 3  HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIVP 58

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 67.0 bits (163), Expect = 4e-12
 Identities = 47/301 (15%), Positives = 106/301 (35%), Gaps = 23/301 (7%)

Query: 99  AEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTN 158
             P +V  ++    + ++   +R      L  L+   +   ++  S  + A+++ +    
Sbjct: 189 RSPQMVSAIVRTMQNTNDVETAR-CTSGTLHNLSHHREGLLAIFKSGGIPALVNMLGSPV 247

Query: 159 INVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAAL 218
            +V        A  +L  L++    +         A  +  + +LL  ++++    +   
Sbjct: 248 DSVL-----FHAITTLHNLLLH---QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDC 299

Query: 219 IEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL---SSYPRGLKVGIKALFALCLVKQT 275
           ++I+  G  +QE +  I        G    L N+    +Y + L    + L  L +    
Sbjct: 300 LQILAYG--NQESKLIILA-----SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN 352

Query: 276 RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTIL 335
           +   V AG  + L   L D  +   +  L T+  L                +  LV+ + 
Sbjct: 353 KPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG---LLGTLVQLLG 409

Query: 336 KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLL-LLVQSDCTDRAKRKAQLLLKL 394
                    AAG L+ L   + + +      G +  L+  ++++   +     A   L+ 
Sbjct: 410 SDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 469

Query: 395 L 395
           L
Sbjct: 470 L 470

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 60.0 bits (145), Expect = 6e-10
 Identities = 33/238 (13%), Positives = 82/238 (34%), Gaps = 9/238 (3%)

Query: 158 NINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAA 217
             NV+  + P    +   + ++    + E          I  L+ LL      V   +A 
Sbjct: 118 PTNVQRLAEPSQMLKHAVVNLINYQDDAE-----LATRAIPELTKLLNDEDQVVVNKAAV 172

Query: 218 LIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRY 277
           ++  +    + +  R  I    ++   ++  ++N ++     +     L  L   ++   
Sbjct: 173 MVHQLS---KKEASRHAIMRSPQMVSAIVRTMQN-TNDVETARCTSGTLHNLSHHREGLL 228

Query: 278 KAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI 337
               +G    LV+ L          A+ T+  L     G       A  +  +V  + K 
Sbjct: 229 AIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT 288

Query: 338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLL 395
           + +        L  L   ++  +   +++G    L+ ++++   ++       +LK+L
Sbjct: 289 NVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL 346

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 51.2 bits (122), Expect = 4e-07
 Identities = 40/290 (13%), Positives = 80/290 (27%), Gaps = 27/290 (9%)

Query: 114 ESNTYGSRLSALRRLRGLARDSDKNRSLISSHN-VRAILSQVFFTNINVKTASSPELAHE 172
                         L+ LA  + +++ +I +    +A+++ +                  
Sbjct: 286 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL----WTTSR 341

Query: 173 SLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELR 232
            L +L +             +A  + +L   L   S  +  N        L  + S    
Sbjct: 342 VLKVLSVCS----SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW----TLRNL-SDAAT 392

Query: 233 AQISNLDEIFEGVIDILKNL--SSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETLV 289
            Q        EG++  L  L  S     +      L  L     + +      G  E LV
Sbjct: 393 KQE-----GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 447

Query: 290 DRLADFDKCDA--ERALATVELLCRIPAGC---AEFAEHALTVPLLVKTILKISDRATEY 344
             +      +   E A+  +  L                   +P++VK +   S      
Sbjct: 448 RTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 507

Query: 345 AAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL 394
           A   L    +            G + +L+ L+     D  +R +    + 
Sbjct: 508 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQ 557

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 51.2 bits (122), Expect = 5e-07
 Identities = 38/273 (13%), Positives = 82/273 (30%), Gaps = 34/273 (12%)

Query: 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN 160
            +LVRT+L  A    +     + ALR L    +D++  ++ +  H    ++ ++      
Sbjct: 444 EALVRTVLR-AGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKL------ 496

Query: 161 VKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIE 220
           +   S   L   ++ L+    L       +  +   I  L  LL  +  + +  ++    
Sbjct: 497 LHPPSHWPLIKATVGLIRNLALCPANHAPLR-EQGAIPRLVQLLVRAHQDTQRRTSMGG- 554

Query: 221 IVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAV 280
                  +Q+   +   ++EI E     L  L+                      R    
Sbjct: 555 -------TQQQFVEGVRMEEIVEACTGALHILARDIHN-----------------RIVIR 590

Query: 281 AAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDR 340
                   V  L    +     A   +  L +                 L + +   ++ 
Sbjct: 591 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA-EGATAPLTELLHSRNEG 649

Query: 341 ATEYAAGALAALCSASERCQRDAVSAGVLTQLL 373
              YAA  L  +     +  +  +S  + + L 
Sbjct: 650 VATYAAAVLFRMSEDKPQDYKKRLSVELTSSLF 682

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 45.4 bits (107), Expect = 3e-05
 Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 2/120 (1%)

Query: 280 VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISD 339
           +A  A   L   L D D+    +A   V  L +  A           V  +V+T+   +D
Sbjct: 147 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 206

Query: 340 -RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398
                  +G L  L             +G +  L+ ++ S            L  LL   
Sbjct: 207 VETARCTSGTLHNLSH-HREGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ 265

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 65.6 bits (160), Expect = 6e-12
 Identities = 51/352 (14%), Positives = 104/352 (29%), Gaps = 40/352 (11%)

Query: 71  HTLRRL--IQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRL 128
           H L  L  I+ +C     +         +P        +       +        A+  L
Sbjct: 8   HMLHLLEQIRAYCETCWEWQEAH-----EPGMDQDKNPM------PAPVEHQICPAVCVL 56

Query: 129 RGLARDSDKNRSLISSHN-----VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT 183
             L+ D + +R  ++           +        +     S     +  +AL  +    
Sbjct: 57  MKLSFDEE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGD 115

Query: 184 ETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFE 243
                 + S    + +L + L   S +++   A+++   L+       +  +        
Sbjct: 116 VANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRN-LSWRADVNSKKTLRE-----V 169

Query: 244 GVIDILKNL---SSYPRGLKVGIKALFALCLVKQTRYKAV---AAGAAETLVDRLADFDK 297
           G +  L            LK  + AL+ L     T  KA      GA   LV  L    +
Sbjct: 170 GSVKALMECALEVKKESTLKSVLSALWNLS-AHCTENKADICAVDGALAFLVGTLTYRSQ 228

Query: 298 CD----AERALATVELLCRIPAGCAEFAEH---ALTVPLLVKTILKISDRATEYAAGALA 350
            +     E     +  +  + A   +  +       +  L++ +   S      A G L 
Sbjct: 229 TNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLW 288

Query: 351 ALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQD 402
            L + + + Q      G ++ L  L+ S         +   L+ L  + P  
Sbjct: 289 NLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPAK 339

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 44/288 (15%), Positives = 88/288 (30%), Gaps = 27/288 (9%)

Query: 101 PSLVRTLLNQASSESNTYGSRLSALRR-----LRGLARDSDKNRSLISSHN--VRAILSQ 153
            ++   L         T       LRR     L  L      N++ + S    +RA+++Q
Sbjct: 76  QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 135

Query: 154 VFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRV 213
           +   + +++   +  L +  L+        +    +   +   + +L         E  +
Sbjct: 136 LKSESEDLQQVIASVLRN--LSWRA-----DVNSKKTLREVGSVKALMECALEVKKESTL 188

Query: 214 NSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL--SSYPRGLKVGIKALFALCL 271
            S       L+     E +A I  +D     ++  L     ++    ++ G   L  +  
Sbjct: 189 KSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSS 247

Query: 272 V----KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALT- 326
           +    +  R         +TL+  L          A  T   L  + A   +  E     
Sbjct: 248 LIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT---LWNLSARNPKDQEALWDM 304

Query: 327 --VPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQL 372
             V +L   I          +A AL  L +      +DA      + L
Sbjct: 305 GAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMSPGSSL 352

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 63.8 bits (154), Expect = 1e-11
 Identities = 10/73 (13%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 18  FRCPISLELMCDPVT-VCTGQTYDRPSIESWVATGNT-TCPVT--RSPLTDFTLIPNHTL 73
             CPI+ +    P+        +DR  I++++    T  CP       ++    + +  +
Sbjct: 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIM 241

Query: 74  RRLIQDWCVANRS 86
               +   +    
Sbjct: 242 ELRCKIAKMKESQ 254

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 65.0 bits (158), Expect = 2e-11
 Identities = 49/299 (16%), Positives = 103/299 (34%), Gaps = 27/299 (9%)

Query: 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN 160
            ++VRT+ N    E+            L  L+   +   ++  S  + A++  +     +
Sbjct: 59  SAIVRTMQNTNDVET-----ARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDS 113

Query: 161 VKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIE 220
           V   +          L  +    E   M +   A  +  + +LL  ++++    +   ++
Sbjct: 114 VLFYAI-------TTLHNLLLHQEGAKMAVR-LAGGLQKMVALLNKTNVKFLAITTDCLQ 165

Query: 221 IVLAGMRSQELRAQISNLDEIFEGVIDILKNL---SSYPRGLKVGIKALFALCLVKQTRY 277
           I+  G  +QE +  I        G    L N+    +Y + L    + L  L +    + 
Sbjct: 166 ILAYG--NQESKLIILA-----SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218

Query: 278 KAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI 337
             V AG  + L   L D  +   +  L T+  L                +  LV+ +   
Sbjct: 219 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG---LLGTLVQLLGSD 275

Query: 338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLL-LLVQSDCTDRAKRKAQLLLKLL 395
                  AAG L+ L   + + +      G +  L+  ++++   +     A   L+ L
Sbjct: 276 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHL 334

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 59.6 bits (144), Expect = 1e-09
 Identities = 27/202 (13%), Positives = 65/202 (32%), Gaps = 10/202 (4%)

Query: 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL---S 253
           I  L+ LL      V   +A ++  +     S+    +          ++  +      +
Sbjct: 16  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS-------PQMVSAIVRTMQNT 68

Query: 254 SYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI 313
           +     +     L  L   ++       +G    LV  L          A+ T+  L   
Sbjct: 69  NDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH 128

Query: 314 PAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLL 373
             G       A  +  +V  + K + +        L  L   ++  +   +++G    L+
Sbjct: 129 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALV 188

Query: 374 LLVQSDCTDRAKRKAQLLLKLL 395
            ++++   ++       +LK+L
Sbjct: 189 NIMRTYTYEKLLWTTSRVLKVL 210

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 54.2 bits (130), Expect = 5e-08
 Identities = 42/310 (13%), Positives = 93/310 (30%), Gaps = 38/310 (12%)

Query: 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN 160
            +LVRT+L  A    +     + ALR L    ++++  ++ +  H    ++ ++      
Sbjct: 308 EALVRTVLR-AGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKL------ 360

Query: 161 VKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIE 220
           +   S   L   ++ L+    L       +  +   I  L  LL  +  + +  ++    
Sbjct: 361 LHPPSHWPLIKATVGLIRNLALCPANHAPLR-EQGAIPRLVQLLVRAHQDTQRRTSMGG- 418

Query: 221 IVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAV 280
                  +Q+   +   ++EI EG    L  L+                      R    
Sbjct: 419 -------TQQQFVEGVRMEEIVEGCTGALHILARDVHN-----------------RIVIR 454

Query: 281 AAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDR 340
                   V  L    +     A   +  L +                 L + +   ++ 
Sbjct: 455 GLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA-EGATAPLTELLHSRNEG 513

Query: 341 ATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP 400
              YAA  L  +     +  +  +S  + + L    +++        A L L +     P
Sbjct: 514 VATYAAAVLFRMSEDKPQDYKKRLSVELTSSLF---RTE-PMAWNETADLGLDIGAQGEP 569

Query: 401 QDSIGNSDDF 410
                +   +
Sbjct: 570 LGYRQDDPSY 579

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 53.4 bits (128), Expect = 7e-08
 Identities = 43/308 (13%), Positives = 84/308 (27%), Gaps = 35/308 (11%)

Query: 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHN-VRAILSQVFFTNI 159
             +V  L                    L+ LA  + +++ +I +    +A+++ +     
Sbjct: 143 QKMVALL------NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTY 196

Query: 160 NVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALI 219
                         L +L +             +A  + +L   L   S  +  N     
Sbjct: 197 EKLL----WTTSRVLKVLSVCS----SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW-- 246

Query: 220 EIVLAGMRSQELRAQISNLDEIFEGVIDILKNL--SSYPRGLKVGIKALFALCLV-KQTR 276
              L  + S     Q        EG++  L  L  S     +      L  L     + +
Sbjct: 247 --TLRNL-SDAATKQEGM-----EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNK 298

Query: 277 YKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTV------PLL 330
                 G  E LV  +      +     A +  L  + +   E       V      P++
Sbjct: 299 MMVCQVGGIEALVRTVLRAGDREDITEPA-ICALRHLTSRHQEAEMAQNAVRLHYGLPVV 357

Query: 331 VKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQL 390
           VK +   S      A   L    +            G + +L+ L+     D  +R +  
Sbjct: 358 VKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMG 417

Query: 391 LLKLLRDS 398
             +     
Sbjct: 418 GTQQQFVE 425

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 32/228 (14%), Positives = 71/228 (31%), Gaps = 13/228 (5%)

Query: 165 SSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSS-IEVRVNSAALIEIVL 223
               + +++  ++      E     I      ++++   + +++ +E    +A  +   L
Sbjct: 26  EDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHN-L 84

Query: 224 AGMRSQELRAQISNLDEIFEGVIDILKNL--SSYPRGLKVGIKALFALCLVKQTRYKAVA 281
           +    +E    I        G I  L  +  S     L   I  L  L L ++    AV 
Sbjct: 85  S--HHREGLLAIFK-----SGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVR 137

Query: 282 -AGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDR 340
            AG  + +V  L   +          +++L             +     LV  +   +  
Sbjct: 138 LAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYE 197

Query: 341 ATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKA 388
              +    +  + S     +   V AG +  L L +    + R  +  
Sbjct: 198 KLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNC 244

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 46.5 bits (110), Expect = 1e-05
 Identities = 25/120 (20%), Positives = 38/120 (31%), Gaps = 2/120 (1%)

Query: 280 VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISD 339
           +A  A   L   L D D+    +A   V  L +  A           V  +V+T+   +D
Sbjct: 11  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 70

Query: 340 -RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398
                  AG L  L S           +G +  L+ ++ S            L  LL   
Sbjct: 71  VETARCTAGTLHNL-SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 129

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 63.3 bits (154), Expect = 5e-11
 Identities = 48/297 (16%), Positives = 94/297 (31%), Gaps = 27/297 (9%)

Query: 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN 160
            ++VRT+ N    E+            L  L+   +     I        L       + 
Sbjct: 62  SAIVRTMQNTNDVET-----ARCTAGTLHNLSHHRE-GLLAIFKSGGIPAL-------VK 108

Query: 161 VKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIE 220
           +  +    +   ++  L    L +         A  +  + +LL  ++++    +   ++
Sbjct: 109 MLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ 168

Query: 221 IVLAGMRSQELRAQISNLDEIFEGVIDILKNL---SSYPRGLKVGIKALFALCLVKQTRY 277
           I+  G  +QE +  I        G    L N+    +Y + L    + L  L +    + 
Sbjct: 169 ILAYG--NQESKLIILA-----SGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221

Query: 278 KAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI 337
             V AG  + L   L D  +   +  L T+  L                +  LV+ +   
Sbjct: 222 AIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEG---LLGTLVQLLGSD 278

Query: 338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL 394
                  AAG L+ L   + + +      G +  L+  V     DR       +  L
Sbjct: 279 DINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRA-GDREDITEPAICAL 334

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 57.1 bits (138), Expect = 5e-09
 Identities = 29/199 (14%), Positives = 70/199 (35%), Gaps = 4/199 (2%)

Query: 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYP 256
           I  L+ LL      V   +A ++  +    + +  R  I    ++   ++  ++N ++  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLS---KKEASRHAIMRSPQMVSAIVRTMQN-TNDV 74

Query: 257 RGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAG 316
              +     L  L   ++       +G    LV  L          A+ T+  L     G
Sbjct: 75  ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134

Query: 317 CAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLV 376
                  A  +  +V  + K + +        L  L   ++  +   +++G    L+ ++
Sbjct: 135 AKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIM 194

Query: 377 QSDCTDRAKRKAQLLLKLL 395
           ++   ++       +LK+L
Sbjct: 195 RTYTYEKLLWTTSRVLKVL 213

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 54.0 bits (130), Expect = 4e-08
 Identities = 39/294 (13%), Positives = 80/294 (27%), Gaps = 27/294 (9%)

Query: 114 ESNTYGSRLSALRRLRGLARDSDKNRSLISSHN-VRAILSQVFFTNINVKTASSPELAHE 172
                         L+ LA  + +++ +I +    +A+++ +                  
Sbjct: 153 NKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLL----WTTSR 208

Query: 173 SLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELR 232
            L +L +             +A  + +L   L   S  +  N        L  +      
Sbjct: 209 VLKVLSVCS----SNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW----TLRNL------ 254

Query: 233 AQISNLDEIFEGVIDILKNL--SSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETLV 289
           +  +   E  EG++  L  L  S     +      L  L     + +      G  E LV
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314

Query: 290 DRLADFD-----KCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEY 344
             +            A  AL  +    +              +P++VK +   S      
Sbjct: 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374

Query: 345 AAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398
           A   L    +            G + +L+ L+     D  +R +    +     
Sbjct: 375 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 428

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 52.5 bits (126), Expect = 1e-07
 Identities = 42/292 (14%), Positives = 71/292 (24%), Gaps = 43/292 (14%)

Query: 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN 160
            +LV+ L       S+       A   L  L  ++ KN+ ++        L +       
Sbjct: 269 GTLVQLL------GSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRT------ 316

Query: 161 VKTASSPELAHES----LALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSA 216
           V  A   E   E     L  L                   +  +  LL   S    + + 
Sbjct: 317 VLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKAT 376

Query: 217 ALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR 276
             +   LA        A +                           I  L  L +     
Sbjct: 377 VGLIRNLAL--CPANHAPLREQG----------------------AIPRLVQLLVRAHQD 412

Query: 277 YKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK 336
            +   +              +   E     + +L R             T+PL V+ +  
Sbjct: 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLN-TIPLFVQLLYS 471

Query: 337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKA 388
             +     AAG L  L    +       + G    L  L+ S   +     A
Sbjct: 472 PIENIQRVAAGVLCELAQ-DKEAAEAIEAEGATAPLTELLHSR-NEGVATYA 521

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 24/120 (20%), Positives = 37/120 (30%), Gaps = 2/120 (1%)

Query: 280 VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISD 339
           +A  A   L   L D D+    +A   V  L +  A           V  +V+T+   +D
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 340 -RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398
                  AG L  L             +G +  L+ ++ S            L  LL   
Sbjct: 74  VETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ 132

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 44.0 bits (104), Expect = 6e-05
 Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 3/137 (2%)

Query: 264 KALFALCLVKQTRYKAV-AAGAAETLVDRLADFDKCDAER-ALATVELLCRIPAGCAEFA 321
             +  L   + +R+  + +      +V  + + +  +  R    T+  L     G     
Sbjct: 39  VMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIF 98

Query: 322 EHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCT 381
           +    +P LVK +    D    YA   L  L    E  +     AG L +++ L+     
Sbjct: 99  KSG-GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNV 157

Query: 382 DRAKRKAQLLLKLLRDS 398
                    L  L   +
Sbjct: 158 KFLAITTDCLQILAYGN 174

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 60.4 bits (146), Expect = 5e-10
 Identities = 53/299 (17%), Positives = 106/299 (35%), Gaps = 19/299 (6%)

Query: 104 VRTLLNQASSESNTYGSRLSALRRLR-GLARDSDKNRSLISSHNVRAILSQVFFTNINVK 162
           +  +  Q +S+      +LSA  + R  L+R+      ++    V   L +       ++
Sbjct: 89  LPQMTQQLNSDDMQE--QLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEF------MR 140

Query: 163 TASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIV 222
                 L  E+   L       +   ++  DAD +     LL+  S+EV+  +   +  V
Sbjct: 141 ENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNV 200

Query: 223 LAGMRSQELRAQISNLDEIFEGVIDILKNL--SSYPRGLKVGIKALFALCLVKQTRYK-A 279
                S + R  +          ++ +  L  S+ P  ++     L  LC  K+ +   +
Sbjct: 201 AGD--STDYRDYVLQ-----CNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWS 253

Query: 280 VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISD 339
           V + A  TL   +   D      A   +  L   P    +          LV+ +   S 
Sbjct: 254 VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHEST 313

Query: 340 RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398
                A  A+  + + ++   +  ++AGVL  L LL+ S   +  K     +  +   +
Sbjct: 314 LVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGN 372

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 49.6 bits (118), Expect = 1e-06
 Identities = 34/255 (13%), Positives = 86/255 (33%), Gaps = 18/255 (7%)

Query: 132 ARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIA 191
           +  +D+         +  +  Q+   ++  + +++ +       +L          +++ 
Sbjct: 74  SVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQ----ILSR---EHRPPIDVV 126

Query: 192 SDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN 251
             A  +  L   +  +  E+    AA     +A   S + +  +          + +   
Sbjct: 127 IQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDA------DAVPLFIQ 180

Query: 252 LSSYPRGLKVGIKALFALCLV----KQTRYKAVAAGAAETLVDRLADFDKCDAERALATV 307
           L      ++V  +A++AL  V       R   +   A E ++             A  T+
Sbjct: 181 LLYTGS-VEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTL 239

Query: 308 ELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAG 367
             LCR      +++  +  +P L K I  +       A  A++ L    +   +  +   
Sbjct: 240 SNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVR 299

Query: 368 VLTQLLLLVQSDCTD 382
           +  +L+ L+  + T 
Sbjct: 300 IPKRLVELLSHESTL 314

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 47.3 bits (112), Expect = 7e-06
 Identities = 38/307 (12%), Positives = 96/307 (31%), Gaps = 18/307 (5%)

Query: 99  AEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTN 158
             P LV  +      E+     +L A   L  +A  +     ++   +   +        
Sbjct: 131 VVPRLVEFM-----RENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLF------- 178

Query: 159 INVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAAL 218
           I +    S E+  +++  L       T+  +     + +  +  L   +   +   +   
Sbjct: 179 IQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWT 238

Query: 219 IEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYK 278
           +   L   R ++ +   S + +    +  ++   S     L     A+  L    Q   +
Sbjct: 239 LS-NLC--RGKKPQPDWSVVSQALPTLAKLIY--SMDTETLVDACWAISYLSDGPQEAIQ 293

Query: 279 A-VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI 337
           A +     + LV+ L+         AL  V  +        +   +A  +P L   +   
Sbjct: 294 AVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP 353

Query: 338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397
            +   + A   ++ + + +    +  + A ++  L+ L++       K     +      
Sbjct: 354 KENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSG 413

Query: 398 SWPQDSI 404
              +  I
Sbjct: 414 GLQRPDI 420

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 26/128 (20%), Positives = 44/128 (34%), Gaps = 5/128 (3%)

Query: 280 VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAE---HALTVPLLVKTILK 336
           + AG    LV+ + +      +   A    L  I +G +   +    A  VPL ++ +  
Sbjct: 127 IQAGVVPRLVEFMRENQPEMLQLEAAWA--LTNIASGTSAQTKVVVDADAVPLFIQLLYT 184

Query: 337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLR 396
            S    E A  AL  +   S   +   +    +  +L L  S+     +     L  L R
Sbjct: 185 GSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR 244

Query: 397 DSWPQDSI 404
              PQ   
Sbjct: 245 GKKPQPDW 252

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 56.9 bits (138), Expect = 2e-09
 Identities = 42/255 (16%), Positives = 95/255 (37%), Gaps = 19/255 (7%)

Query: 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN 160
           P + + L       S+    +LSA R+   +  D ++    +        L       + 
Sbjct: 15  PQMTQQL------NSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPAL-------VQ 61

Query: 161 VKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIE 220
           + ++ + ++  E+L  L        E ++   DA  + +L  LL   + ++   +   + 
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121

Query: 221 IVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAV 280
            + +G    E    + +       ++ +L   S   + L+  + AL  +      + +AV
Sbjct: 122 NIASG--GNEQIQAVIDAG-ALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAV 176

Query: 281 A-AGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISD 339
             AGA   LV  L+  ++   + AL  +  +        +  + A  +  L +     ++
Sbjct: 177 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE 236

Query: 340 RATEYAAGALAALCS 354
           +  + A  AL  L S
Sbjct: 237 KIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 43/207 (20%), Positives = 84/207 (40%), Gaps = 13/207 (6%)

Query: 193 DADKITSLSSLLFHSSIEVRVNSA-ALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN 251
           DA  + +L  LL   + ++   +  AL  I        E    + +      G +  L  
Sbjct: 52  DAGALPALVQLLSSPNEQILQEALWALSNIASG---GNEQIQAVID-----AGALPALVQ 103

Query: 252 L--SSYPRGLKVGIKALFALCLVKQTRYKAV-AAGAAETLVDRLADFDKCDAERALATVE 308
           L  S   + L+  + AL  +      + +AV  AGA   LV  L+  ++   + AL  + 
Sbjct: 104 LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 163

Query: 309 LLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGV 368
            +        +    A  +P LV+ +   +++  + A  AL+ + S     ++    AG 
Sbjct: 164 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA 223

Query: 369 LTQLLLLVQSDCTDRAKRKAQLLLKLL 395
           L +L  L   +  ++ +++AQ  L+ L
Sbjct: 224 LEKLEQLQSHE-NEKIQKEAQEALEKL 249

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 39/213 (18%), Positives = 84/213 (39%), Gaps = 20/213 (9%)

Query: 194 ADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLS 253
             ++  ++  L    ++ ++++      +L+     E    + +      G +  L  L 
Sbjct: 11  GSELPQMTQQLNSDDMQEQLSATRKFSQILSD--GNEQIQAVID-----AGALPALVQLL 63

Query: 254 SYPRGLKVGIKALFALC-LV----KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVE 308
           S P   ++  +AL+AL  +     +Q +   + AGA   LV  L+  ++   + AL    
Sbjct: 64  SSPN-EQILQEALWALSNIASGGNEQIQ-AVIDAGALPALVQLLSSPNEQILQEALWA-- 119

Query: 309 LLCRIPAGCAEFAEHALT---VPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVS 365
            L  I +G  E  +  +    +P LV+ +   +++  + A  AL+ + S      +  + 
Sbjct: 120 -LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 178

Query: 366 AGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS 398
           AG L  L+ L+ S      +     L  +    
Sbjct: 179 AGALPALVQLLSSPNEQILQEALWALSNIASGG 211

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 58.0 bits (140), Expect = 2e-09
 Identities = 43/306 (14%), Positives = 93/306 (30%), Gaps = 27/306 (8%)

Query: 115 SNTYGSRLSALRRLRGLARDSDKNRSLISSHN-----VRAILSQVFFTNINVKTASSPEL 169
           +        A+  L  L+ D + +R  ++           +        +     S    
Sbjct: 159 APVEHQICPAVCVLMKLSFDEE-HRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLR 217

Query: 170 AHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ 229
            +  +AL  +          + S    + +L + L   S +++   A+++   L+     
Sbjct: 218 RYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR-NLSWRADV 276

Query: 230 ELRAQISNLDEIFEGVIDILKNL---SSYPRGLKVGIKALFALC-LVKQTRYKAV-AAGA 284
             +  +        G +  L            LK  + AL+ L     + +       GA
Sbjct: 277 NSKKTLRE-----VGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGA 331

Query: 285 AETLVDRLADFDKCD----AERALATVELLCRIPAGCAE----FAEHALTVPLLVKTILK 336
              LV  L    + +     E     +  +  + A   +      E+   +  L++ +  
Sbjct: 332 LAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC-LQTLLQHLKS 390

Query: 337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLR 396
            S      A G L  L + + + Q      G ++ L  L+ S         +   L+ L 
Sbjct: 391 HSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLM 449

Query: 397 DSWPQD 402
            + P  
Sbjct: 450 ANRPAK 455

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 44.6 bits (105), Expect = 4e-05
 Identities = 44/279 (15%), Positives = 81/279 (29%), Gaps = 29/279 (10%)

Query: 101 PSLVRTLLNQASSESNTYGSRLSALRR-----LRGLARDSDKNRSLISSHN--VRAILSQ 153
            ++   L         T       LRR     L  L      N++ + S    +RA+++Q
Sbjct: 192 QAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQ 251

Query: 154 VFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRV 213
           +   + +++   +  L +  L+        +    +   +   + +L         E  +
Sbjct: 252 LKSESEDLQQVIASVLRN--LSWRA-----DVNSKKTLREVGSVKALMECALEVKKESTL 304

Query: 214 NSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK 273
            S       L+     E +A I  +D     ++  L   S     L +       L  V 
Sbjct: 305 KSVLSALWNLSAH-CTENKADICAVDGALAFLVGTLTYRSQTNT-LAIIESGGGILRNVS 362

Query: 274 QT-------RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALT 326
                    R         +TL+  L          A  T   L  + A   +  E    
Sbjct: 363 SLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGT---LWNLSARNPKDQEALWD 419

Query: 327 ---VPLLVKTILKISDRATEYAAGALAALCSASERCQRD 362
              V +L   I          +A AL  L +      +D
Sbjct: 420 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 458

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 19/68 (27%), Positives = 28/68 (41%), Gaps = 3/68 (4%)

Query: 14 IPYHFRCPISLELMCDPVTV-CTGQTYDRPSIES-WVATGNTTCPVTRSPLTDF-TLIPN 70
          IP    C I  ++M D V + C G +Y    I +  + +   TCP           LI N
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69

Query: 71 HTLRRLIQ 78
            LR+ + 
Sbjct: 70 KFLRQAVN 77

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 50.3 bits (120), Expect = 3e-08
 Identities = 16/67 (23%), Positives = 23/67 (34%), Gaps = 1/67 (1%)

Query: 13 QIPYHFRCPISLELMCDPVTVCT-GQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNH 71
           I   FRC I +E + D        +      I  W+      CP  R+PL    L+   
Sbjct: 18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCR 77

Query: 72 TLRRLIQ 78
              + Q
Sbjct: 78 WAEEVTQ 84

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 53.1 bits (127), Expect = 8e-08
 Identities = 33/304 (10%), Positives = 91/304 (29%), Gaps = 17/304 (5%)

Query: 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN 160
           P  V  L      +++    +  +   L  +A  + +    +                I+
Sbjct: 103 PKFVSFL-----GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAF-------IS 150

Query: 161 VKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIE 220
           +  +    ++ +++  L       +   ++      I  L +LL  +  ++   +   + 
Sbjct: 151 LLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALL--AVPDLSTLACGYLR 208

Query: 221 IVLAGMRSQELRAQISNLDEIFEGVIDILKNL--SSYPRGLKVGIKALFALCLVKQTRYK 278
            +   + +       +   +  E ++  L  L   + P  L     A+  L      R +
Sbjct: 209 NLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIE 268

Query: 279 AVA-AGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI 337
            V   G    LV  L   +      AL  +  +        +    A  + +    +   
Sbjct: 269 MVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP 328

Query: 338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD 397
                + A   ++ + +  +   +  V+ G++  L+ ++        K  A  +      
Sbjct: 329 KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSG 388

Query: 398 SWPQ 401
              +
Sbjct: 389 GTVE 392

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 44.2 bits (104), Expect = 6e-05
 Identities = 14/111 (12%), Positives = 30/111 (27%), Gaps = 1/111 (0%)

Query: 280 VAAGAAETLVDRLADFDKCDAER-ALATVELLCRIPAGCAEFAEHALTVPLLVKTILKIS 338
           + AG     V  L   D    +  +   +  +    +   +       +P  +  +    
Sbjct: 97  IRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPH 156

Query: 339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQ 389
              +E A  AL  +       +   +  G +  LL L+             
Sbjct: 157 AHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL 207

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 43.5 bits (102), Expect = 9e-05
 Identities = 36/191 (18%), Positives = 61/191 (31%), Gaps = 14/191 (7%)

Query: 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL--SS 254
           I    S L  +        +A     +A   S++ +A +        G I    +L  S 
Sbjct: 102 IPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDG------GAIPAFISLLASP 155

Query: 255 YPRGLKVGIKALFALCLVKQT-RYKAVAAGAAETLVDRLADFDKCDAERAL---ATVEL- 309
           +    +  + AL  +       R   +  GA + L+  LA  D            T  L 
Sbjct: 156 HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS 215

Query: 310 -LCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGV 368
            LCR              +P LV+ +          +  A++ L           V  GV
Sbjct: 216 NLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGV 275

Query: 369 LTQLLLLVQSD 379
           + QL+ L+ + 
Sbjct: 276 VPQLVKLLGAT 286

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 53.0 bits (127), Expect = 1e-07
 Identities = 41/300 (13%), Positives = 93/300 (31%), Gaps = 23/300 (7%)

Query: 101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN 160
              V  L             +  +   L  +A  +     ++       I        I 
Sbjct: 67  ARFVEFL-----KRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIF-------IE 114

Query: 161 VKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLF-HSSIEVRVNSAALI 219
           + ++   ++  +++  L       T C +   D + +  L  L    + + +  N+   +
Sbjct: 115 LLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWAL 174

Query: 220 EIVLAGMRSQELRAQISNLDEIFEGVIDILKNL--SSYPRGLKVGIKALFALCLVKQTRY 277
             +  G       A++S         +++L  L   S    L     AL  L      + 
Sbjct: 175 SNLCRGKSPPPEFAKVS-------PCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKI 227

Query: 278 KAVA-AGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK 336
           +AV  AG    LV+ L   D      AL  V  +        +   +   +  L+  +  
Sbjct: 228 QAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS 287

Query: 337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLR 396
             +   + A   ++ + + +    +  + A +   L+ ++Q+      K  A  +     
Sbjct: 288 PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATS 347

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 48.3 bits (115), Expect = 2e-06
 Identities = 23/127 (18%), Positives = 39/127 (30%), Gaps = 2/127 (1%)

Query: 280 VAAGAAETLVDRLADFDKCDAER-ALATVELLCRIPAGCAEFAEHALTVPLLVKTILKIS 338
              G     V+ L   + C  +  +   +  +    +        A  VP+ ++ +    
Sbjct: 61  STPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEF 120

Query: 339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKA-QLLLKLLRD 397
           +   E A  AL  +   S  C+   +   +L  LL L          R A   L  L R 
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG 180

Query: 398 SWPQDSI 404
             P    
Sbjct: 181 KSPPPEF 187

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 49.0 bits (117), Expect = 1e-07
 Identities = 15/72 (20%), Positives = 28/72 (38%)

Query: 8  LDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTL 67
          ++    +   + CPI L  + + V    G  + +  I   +      CPV    L +  L
Sbjct: 9  VEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL 68

Query: 68 IPNHTLRRLIQD 79
           P++  +R I  
Sbjct: 69 FPDNFAKREILS 80

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.5 bits (125), Expect = 2e-07
 Identities = 49/347 (14%), Positives = 88/347 (25%), Gaps = 103/347 (29%)

Query: 32  TVCTGQTYDRPSIES-------WVATGNTTCPVTRSPLTDFTLIPNHTL-RRLIQDWCVA 83
           T           ++        W+   N   P       +  L     L  ++  +W   
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSP-------ETVLEMLQKLLYQIDPNWT-- 214

Query: 84  NRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLI- 142
           +RS     I                              S    LR L +       L+ 
Sbjct: 215 SRSDHSSNIKLRIH-------------------------SIQAELRRLLKSKPYENCLLV 249

Query: 143 -----SSHNVRA--ILSQVFFT--NINV------KTASSPELAH--------ESLALLVM 179
                ++    A  +  ++  T     V       T +   L H        E  +LL+ 
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309

Query: 180 FPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELR-AQISNL 238
           +   +    ++  +        +    S I      A  I   LA       +      L
Sbjct: 310 Y--LDCRPQDLPREVLTT----NPRRLSII------AESIRDGLA--TWDNWKHVNCDKL 355

Query: 239 DEIFEGVIDIL---------KNLSSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETL 288
             I E  +++L           LS +P    +       L L+        V       +
Sbjct: 356 TTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI---LLSLIWFDVIKSDV-----MVV 407

Query: 289 VDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTIL 335
           V++L        E+     E    IP+   E          L ++I+
Sbjct: 408 VNKLH--KYSLVEKQPK--ESTISIPSIYLELKVKLENEYALHRSIV 450

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 62/399 (15%), Positives = 111/399 (27%), Gaps = 143/399 (35%)

Query: 135 SDKNRSLISSHNVRAILSQ--------VFFTNINVKTASSPELAHESLALLVMFP-LTE- 184
            D  +S++S   +  I+            F  +  K     +   E   L + +  L   
Sbjct: 39  QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE-VLRINYKFLMSP 97

Query: 185 --TECMEIASDADKITSLSSLLFHSSIEVR---VNSA--------ALIE------IVLAG 225
             TE  + +            L++ +       V+          AL+E      +++ G
Sbjct: 98  IKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 226 M-------------RSQELRAQISNLDEIF----------EGVIDILKNLS--------- 253
           +              S +++ ++    +IF          E V+++L+ L          
Sbjct: 158 VLGSGKTWVALDVCLSYKVQCKMDF--KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTS 215

Query: 254 --------------------------SYPRGL---------KVGIKALFAL-C--LVKQT 275
                                      Y   L         K    A F L C  L+  T
Sbjct: 216 RSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKA-WNA-FNLSCKILL-TT 272

Query: 276 RYKAVA--AGAAET----LVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTV-P 328
           R+K V     AA T    L          + +  L    L CR      +     LT  P
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKY-LDCRP----QDLPREVLTTNP 327

Query: 329 LLVKTI---LKI------------SDRATEYAAGALAALCSASERC--------QRDA-V 364
             +  I   ++              D+ T     +L  L  A  R            A +
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387

Query: 365 SAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQDS 403
              +L+  L+      +D      +L    L +  P++S
Sbjct: 388 PTILLS--LIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score = 49.2 bits (118), Expect = 4e-07
 Identities = 37/207 (17%), Positives = 82/207 (39%), Gaps = 13/207 (6%)

Query: 193 DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL 252
              ++  +   L     +   ++   +  + +G    E    + +      G +  L  L
Sbjct: 10  HGSELPQMVQQLNSPDQQELQSALRKLSQIASG--GNEQIQAVID-----AGALPALVQL 62

Query: 253 SSYPRGLKVGIKALFALC-LVKQTRYKA---VAAGAAETLVDRLADFDKCDAERALATVE 308
            S P   ++  +AL+AL  +      +    + AGA   LV  L+  ++   + AL  + 
Sbjct: 63  LSSPN-EQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALS 121

Query: 309 LLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGV 368
            +        +    A  +P LV+ +   +++  + A  AL+ + S     ++    AG 
Sbjct: 122 NIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGA 181

Query: 369 LTQLLLLVQSDCTDRAKRKAQLLLKLL 395
           L +L  L   +  ++ +++AQ  L+ L
Sbjct: 182 LEKLEQLQSHE-NEKIQKEAQEALEKL 207

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 51.0 bits (121), Expect = 5e-07
 Identities = 44/318 (13%), Positives = 92/318 (28%), Gaps = 33/318 (10%)

Query: 122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP 181
           L  L +L          R       ++   +   F     K       A + LA L +  
Sbjct: 351 LVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA 410

Query: 182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEI 241
                  ++  D   I +L  L    +             +      QE+  ++  L + 
Sbjct: 411 ---ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKF 467

Query: 242 F-------------------------EGVIDILKNL--SSYPRGLKVGIKALFALCLVKQ 274
                                     EG+   L  L  +      ++  + L A+C +K+
Sbjct: 468 AKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKE 527

Query: 275 TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI--PAGCAEFAEHALTVPLLVK 332
            R K V  G  + L+    +  +     A   +  +     P            +  L+ 
Sbjct: 528 LRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLN 587

Query: 333 TILK-ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLL 391
            + +  +      +  AL  L S +E  ++  +    ++++   +  D     +  AQ L
Sbjct: 588 LLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCL 647

Query: 392 LKLLRDSWPQDSIGNSDD 409
             L+           ++D
Sbjct: 648 CNLVMSEDVIKMFEGNND 665

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 46.4 bits (109), Expect = 1e-05
 Identities = 34/208 (16%), Positives = 70/208 (33%), Gaps = 12/208 (5%)

Query: 197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYP 256
           + +L  +    + + + ++   +  +   +  +   +   +LD     VI  L NL    
Sbjct: 538 VKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLD-----VIRPLLNLLQQD 592

Query: 257 RGLKVGIKALFALC----LVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR 312
                  ++L AL     + +  R + +       +   L +        A   +  L  
Sbjct: 593 CTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVM 652

Query: 313 IPAGCAEFAEHALTVPLLVKTILKISDRAT-EYAAGALAALCSASERCQRDAVS-AGVLT 370
                  F  +   V  L   + +  D  T    AGALA + S S +C    ++ A  L 
Sbjct: 653 SEDVIKMFEGNNDRVKFLAL-LCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLD 711

Query: 371 QLLLLVQSDCTDRAKRKAQLLLKLLRDS 398
            L  L+ +       R   ++L ++   
Sbjct: 712 ILHTLIANPSPAVQHRGIVIILNMINAG 739

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 45.5 bits (108), Expect = 1e-06
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 4/75 (5%)

Query: 6  EPLDLSVQIPYHFRCPISLELMCDPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPLT 63
            L +   I    RC I  E     + +  C    Y    I  +++   T CP     +T
Sbjct: 11 PGLAVMKTIDDLLRCGICFEYFNIAMIIPQC-SHNYCSLCIRKFLSY-KTQCPTCCVTVT 68

Query: 64 DFTLIPNHTLRRLIQ 78
          +  L  N  L  L++
Sbjct: 69 EPDLKNNRILDELVK 83

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 48.5 bits (115), Expect = 1e-06
 Identities = 46/275 (16%), Positives = 94/275 (34%), Gaps = 26/275 (9%)

Query: 147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKI----TSLSS 202
           +R +   +  T    + A+  +    +L LL        E M+ A+D  ++      +  
Sbjct: 34  LRVLSQPMPPTAGEAEQAADQQEREGALELLADL----CENMDNAADFCQLSGMHLLVGR 89

Query: 203 LLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG 262
            L   +  +R  +A LI           ++ Q+        G +  L  L        V 
Sbjct: 90  YLEAGAAGLRWRAAQLIGTCSQ--NVAAIQEQVLG-----LGALRKLLRLLDRDACDTVR 142

Query: 263 IKALFAL-CLVKQTRY---KAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCA 318
           +KALFA+ CLV++      + +       L+  +    +    ++   ++ L        
Sbjct: 143 VKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 202

Query: 319 EFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGV-----LTQLL 373
                   V  LV  +        E+  GAL +L +   +  R+     +     L    
Sbjct: 203 GTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRC 262

Query: 374 LLVQSDCTDRAKRKAQLLLKLLRDSWPQDSIGNSD 408
            L+Q    +  + + +   KLL+  +   +  + D
Sbjct: 263 QLLQQH--EEYQEELEFCEKLLQTCFSSPADDSMD 295

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 45.7 bits (108), Expect = 2e-06
 Identities = 12/78 (15%), Positives = 25/78 (32%), Gaps = 1/78 (1%)

Query: 2   PGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSP 61
                      ++   F+C    EL+  P+T        +  ++        +CP  R  
Sbjct: 37  ASGSPFQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYD 96

Query: 62  LTDF-TLIPNHTLRRLIQ 78
           L     +  N  L+ ++ 
Sbjct: 97  LGRSYAMQVNQPLQTVLN 114

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 44.9 bits (106), Expect = 3e-06
 Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 7/71 (9%)

Query: 18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT-------LIPN 70
           +C I +E++ +PVT+    T  +P  +S V   +  CP  R  ++ +T        + N
Sbjct: 16 CQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVN 75

Query: 71 HTLRRLIQDWC 81
            L  +IQ   
Sbjct: 76 VELWTIIQKHY 86

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 1   MPGSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRS 60
           +   +E  +   ++   F C    EL+  PVT        +  ++        +CP  R 
Sbjct: 62  LSHLVEGPNFLKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRH 121

Query: 61  PLT-DFTLIPNHTLRRLIQ 78
            L  ++ +IPN  L+ L+ 
Sbjct: 122 DLGQNYIMIPNEILQTLLD 140

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 44.5 bits (105), Expect = 5e-06
 Identities = 15/76 (19%), Positives = 24/76 (31%), Gaps = 1/76 (1%)

Query: 5  LEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64
          L  +D          C I   ++ DPV       + R  I   +    + CP  R P   
Sbjct: 11 LLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70

Query: 65 FTLI-PNHTLRRLIQD 79
            L  P  +   ++  
Sbjct: 71 TDLESPVKSFLNILNS 86

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 45.5 bits (107), Expect = 6e-06
 Identities = 15/73 (20%), Positives = 28/73 (38%)

Query: 7  PLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT 66
           ++    +   + CPI L  + + V    G  + +  I   +      CPV    L +  
Sbjct: 8  DVEFDPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQ 67

Query: 67 LIPNHTLRRLIQD 79
          L P++  +R I  
Sbjct: 68 LFPDNFAKREILS 80

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 44.3 bits (104), Expect = 8e-06
 Identities = 16/90 (17%), Positives = 25/90 (27%), Gaps = 7/90 (7%)

Query: 2  PGSLEPLD-------LSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTT 54
          PGSLE L        L  ++   + C     ++  P     G  Y    + S +++G   
Sbjct: 9  PGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQN 68

Query: 55 CPVTRSPLTDFTLIPNHTLRRLIQDWCVAN 84
          C            I          D     
Sbjct: 69 CAACVHEGIYEEGISILESSSAFPDNAARR 98

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 42.0 bits (99), Expect = 1e-05
 Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 2/63 (3%)

Query: 3  GSLEPLDLSVQIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIE-SWVATGNTTCPVTRS 60
          GS         IP    C I  ++M D V + C G +Y    I  + + +   TCP    
Sbjct: 1  GSSGSSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQ 60

Query: 61 PLT 63
             
Sbjct: 61 NDV 63

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 44.2 bits (104), Expect = 1e-05
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 4/65 (6%)

Query: 17  HFRCPISLELMCDPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPLTDF-TLIPNHTL 73
              CPI L+++ + +T   C    +    I + + +GN  CP  R  L    +L P+   
Sbjct: 54  ELMCPICLDMLKNTMTTKEC-LHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNF 112

Query: 74  RRLIQ 78
             LI 
Sbjct: 113 DALIS 117

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 5/52 (9%), Positives = 19/52 (36%)

Query: 13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64
           +   ++C     ++C P     G  +    + + +++ +  C   +  +  
Sbjct: 11 TVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVK 62

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 41.3 bits (97), Expect = 5e-05
 Identities = 10/67 (14%), Positives = 25/67 (37%), Gaps = 6/67 (8%)

Query: 17 HFRCPISLELMCDPVTVCT-GQTYDRPSIESWVATGNTTCPVTRSPLTD----FTLIPNH 71
          H  C +      D  T+     ++ +  I  ++ T +  CP+    +        +  + 
Sbjct: 15 HLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDK 73

Query: 72 TLRRLIQ 78
          TL+ ++ 
Sbjct: 74 TLQDIVY 80

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 40.1 bits (94), Expect = 9e-05
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 5/66 (7%)

Query: 18 FRCPISLELMCDPVTVCTGQTYDRPSIESW-----VATGNTTCPVTRSPLTDFTLIPNHT 72
            CPI LEL+ +PV+     ++ R  I           G   CPV R P     L PN  
Sbjct: 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79

Query: 73 LRRLIQ 78
          +  +++
Sbjct: 80 VANIVE 85

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 39.4 bits (92), Expect = 1e-04
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 1/53 (1%)

Query: 18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN 70
            C I L+    PV++     +    ++     G   C + R  + +  L   
Sbjct: 16 PECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCALCRQEIPEDFLDSG 67

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 85

 Score = 38.4 bits (90), Expect = 3e-04
 Identities = 16/66 (24%), Positives = 33/66 (50%), Gaps = 5/66 (7%)

Query: 18 FRCPISLELMCDPVTVCTGQTYDRPSI-----ESWVATGNTTCPVTRSPLTDFTLIPNHT 72
            CPI LEL+  P+++  G ++ +  +     +S +  G ++CPV R       + PN  
Sbjct: 20 VTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRH 79

Query: 73 LRRLIQ 78
          +  +++
Sbjct: 80 VANIVE 85

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 112

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 14/63 (22%), Positives = 31/63 (49%), Gaps = 2/63 (3%)

Query: 18 FRCPISLELMCDPVTVCTGQTYDRPSI-ESW-VATGNTTCPVTRSPLTDFTLIPNHTLRR 75
            CPI LEL+ +PV+      + +  + +      G + CP+ ++ +T  +L  +    +
Sbjct: 22 LECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQ 81

Query: 76 LIQ 78
          L++
Sbjct: 82 LVE 84

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	418
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.98
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.98
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.97
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.97
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.97
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.97
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.96
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.96
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.96
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.95
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.95
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.95
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.95
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.94
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.94
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.94
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.93
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.92
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.9
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.9
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.89
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.87
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.85
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.85
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.85
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.81
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.8
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.76
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.74
3grl_A	651	General vesicular transport factor P115; vesicle t	99.72
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.67
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.59
3grl_A	651	General vesicular transport factor P115; vesicle t	99.59
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.58
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.54
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.54
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.54
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.5
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.5
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.5
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.49
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.48
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.48
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.47
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.46
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.46
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.46
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.45
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.45
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.44
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.42
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.42
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.42
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.4
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.38
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.38
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.36
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.36
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.34
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.34
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.31
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.3
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.3
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.3
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.29
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.29
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.28
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.27
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.26
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.22
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.21
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.21
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.17
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.12
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.11
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.09
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.03
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.03
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.02
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.02
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.02
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.01
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.98
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.98
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	98.97
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	98.97
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	98.95
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.91
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.9
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.85
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.84
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.81
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.8
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.77
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.74
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.72
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.71
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.71
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.64
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.6
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.59
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.59
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.56
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.56
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.51
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.48
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.48
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.47
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.46
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.46
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.37
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.36
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.34
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.31
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.3
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.28
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.19
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.18
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.12
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.11
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.1
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.09
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.07
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.04
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.01
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.01
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.01
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	97.95
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.88
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.86
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.69
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.68
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.65
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.59
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.41
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.38
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.36
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.26
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	97.18
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.09
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	96.91
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.83
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.51
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	96.41
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.4
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.23
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.19
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.15
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.09
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	95.87
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.79
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	95.62
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	95.28
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.25
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	95.22
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	94.01
3nw0_A	238	Non-structural maintenance of chromosomes element	93.69
2x19_B	963	Importin-13; nuclear transport, protein transport;	93.66
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	93.13
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	92.96
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	92.73
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	92.45
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	92.12
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	92.11
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	92.03
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	91.81
2x1g_F	971	Cadmus; transport protein, developmental protein,	91.43
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	91.18
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	90.88
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	90.55
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	90.55
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	90.33
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	89.81
2x19_B	963	Importin-13; nuclear transport, protein transport;	89.76
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	89.52
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	88.33
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	88.18
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	88.15
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	87.63
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	86.4
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	85.61
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	85.05
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	85.03
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	84.62
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	84.04
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	83.71
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	83.45
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	83.38
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	82.78
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	82.56
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	82.48
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	81.19

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=8.7e-35  Score=278.91  Aligned_cols=272  Identities=14%  Similarity=0.102  Sum_probs=238.1

Q ss_pred             hhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccc----cccCCChhHHHHHHHHHhcCCCChhHHHhhccc-C
Q 014817          120 SRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNIN----VKTASSPELAHESLALLVMFPLTETECMEIASD-A  194 (418)
Q Consensus       120 ~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~----~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~  194 (418)
                      ....|+++|.+++.+ +++|+.|++.|+++.|+.+|..+..    .....++++++.|+++|.+|+.+++++|..+.. .
T Consensus        48 ~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~  126 (354)
T 3nmw_A           48 QICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMK  126 (354)
T ss_dssp             THHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcC
Confidence            456899999999875 8999999999999999999963210    000014679999999999999888678888864 5


Q ss_pred             CchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc--chhhhhHhhchhhhHHHHHHHh-hcCCCChhhhHHHHHHHHHHcc
Q 014817          195 DKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR--SQELRAQISNLDEIFEGVIDIL-KNLSSYPRGLKVGIKALFALCL  271 (418)
Q Consensus       195 g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~--~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~a~~aL~~L~~  271 (418)
                      |+|+.|+++|+++++++++.|+++|+||   +.  ++++|..|.. .|+|++|+++| +++  ++.+++.|+++|+||+.
T Consensus       127 GaIp~LV~LL~s~~~~v~~~A~~aL~nL---s~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~--~~~~~~~A~~aL~nLs~  200 (354)
T 3nmw_A          127 GCMRALVAQLKSESEDLQQVIASVLRNL---SWRADVNSKKTLRE-VGSVKALMECALEVK--KESTLKSVLSALWNLSA  200 (354)
T ss_dssp             HHHHHHHHGGGCSCHHHHHHHHHHHHHH---HTTCCHHHHHHHHH-TTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHCCCCHHHHHHHHHHHHHH---hccCCHHHHHHHHH-CCCHHHHHHHHhcCC--CHHHHHHHHHHHHHHHc
Confidence            6699999999999999999999999999   44  4678999875 79999999986 455  78999999999999998


Q ss_pred             -ccccHHHHH-HcCchHHHHHHhcCCCc----ccHHHHHHHHHHHhc----CHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817          272 -VKQTRYKAV-AAGAAETLVDRLADFDK----CDAERALATVELLCR----IPAGCAEFAEHALTVPLLVKTILKISDRA  341 (418)
Q Consensus       272 -~~~n~~~i~-~~G~v~~Lv~lL~~~~~----~~~~~a~~~L~~L~~----~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~  341 (418)
                       +++|+..++ +.|++|.|+++|.+++.    ++++.++++|++|+.    ++++++.+.+ .|+++.|+++|.+++..+
T Consensus       201 ~~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~v  279 (354)
T 3nmw_A          201 HCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTI  279 (354)
T ss_dssp             TCHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHTTCSCHHH
T ss_pred             cChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHH-cCCHHHHHHHHcCCChHH
Confidence             668899988 79999999999987654    388999999999995    8999999988 599999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          342 TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       342 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ++.|+++|+||+.++++.++.+.+.|+++.|+.+|+++ ++++|+.|+++|++|..+.+
T Consensus       280 ~~~A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          280 VSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCH
Confidence            99999999999988999999999999999999999877 99999999999999998744

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=1.2e-33  Score=278.86  Aligned_cols=272  Identities=14%  Similarity=0.100  Sum_probs=236.8

Q ss_pred             HHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhccccc----ccCCChhHHHHHHHHHhcCCCChhHHHhhcc-cCCc
Q 014817          122 LSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINV----KTASSPELAHESLALLVMFPLTETECMEIAS-DADK  196 (418)
Q Consensus       122 ~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~----~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~  196 (418)
                      ..|+++|.+++. ++++|+.|++.|++++|+.+|..+...    ....++.+++.|+++|.+|+.+++.++..+. ..|+
T Consensus       166 ~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga  244 (458)
T 3nmz_A          166 CPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC  244 (458)
T ss_dssp             HHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence            489999999965 599999999999999999999532000    0001467899999999999988866787776 4566


Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHhccc--chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc-cc
Q 014817          197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMR--SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL-VK  273 (418)
Q Consensus       197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~--~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~-~~  273 (418)
                      |+.|+++|++++.++++.|+++|+||   +.  ++++|..|.. .|+|++|+++|.... ++.+++.|+.+|+||+. ++
T Consensus       245 Ip~LV~LL~s~~~~v~~~A~~aL~nL---s~~~~~~~k~~I~~-~GaI~~LV~lLl~s~-~~~v~~~A~~aL~nLs~~~~  319 (458)
T 3nmz_A          245 MRALVAQLKSESEDLQQVIASVLRNL---SWRADVNSKKTLRE-VGSVKALMECALEVK-KESTLKSVLSALWNLSAHCT  319 (458)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHH---TSSCCHHHHHHHHH-TTHHHHHHHHHTTCC-SHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHH---hcCCCHHHHHHHHH-cCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHccCCH
Confidence            99999999999999999999999999   55  4678888875 799999999865432 78999999999999998 67


Q ss_pred             ccHHHHH-HcCchHHHHHHhcCCCcc----cHHHHHHHHHHHh----cCHhHHHHHHhccCChHHHHHHHhcCChHHHHH
Q 014817          274 QTRYKAV-AAGAAETLVDRLADFDKC----DAERALATVELLC----RIPAGCAEFAEHALTVPLLVKTILKISDRATEY  344 (418)
Q Consensus       274 ~n~~~i~-~~G~v~~Lv~lL~~~~~~----~~~~a~~~L~~L~----~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~  344 (418)
                      +|+..++ +.|+++.|+++|.+++..    +++.++++|++|+    .++++++.+.+ +|+++.|+++|.+++..++++
T Consensus       320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~-~G~i~~Lv~LL~~~~~~v~~~  398 (458)
T 3nmz_A          320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRE-NNCLQTLLQHLKSHSLTIVSN  398 (458)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHSSCSCHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHH-cccHHHHHHHHcCCChHHHHH
Confidence            8999998 799999999999876543    8999999999999    48999999998 499999999999999999999


Q ss_pred             HHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCC
Q 014817          345 AAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQ  401 (418)
Q Consensus       345 A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~~  401 (418)
                      |+++|+||+.++++.+..+++.|+++.|+.+|+++ ++++++.|+++|++|..+.+.
T Consensus       399 A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~~~p~  454 (458)
T 3nmz_A          399 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMANRPA  454 (458)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHcCCHh
Confidence            99999999988999999999999999999999877 999999999999999987543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=4e-32  Score=270.85  Aligned_cols=282  Identities=15%  Similarity=0.110  Sum_probs=237.4

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      +++.+++.|++++.+  .+..|+..|++++..++.++..+++.|++|.|+++|.++       ++++++.|+++|.+|+.
T Consensus         3 ~l~~lv~~L~s~~~~--~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~-------~~~~~~~A~~aL~nLa~   73 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEK--YQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-------NQNVQQAAAGALRNLVF   73 (457)
T ss_dssp             CHHHHHHHHHSSCTH--HHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-------CHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHCCCCHH--HHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHhc
Confidence            478999999988654  468999999999988888898999999999999999976       68999999999999998


Q ss_pred             ChhHHHhhcccCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh--------cCC
Q 014817          183 TETECMEIASDADKITSLSSLLF-HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK--------NLS  253 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~--------~~~  253 (418)
                      +++++|..|++.|+|+.|+++|+ +++.++++.++++|+||   +.++++|..+..  |++++|+++|.        +..
T Consensus        74 ~~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nL---a~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~  148 (457)
T 1xm9_A           74 RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNL---SSTDELKEELIA--DALPVLADRVIIPFSGWCDGNS  148 (457)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHH---HTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC----
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHH---hcCHHhHHHHHh--ccHHHHHHHHhccccccccCcc
Confidence            75689999999999999999999 88999999999999999   666888988864  99999999993        220


Q ss_pred             ------CChhhhHHHHHHHHHHccccccHHHHHHc-CchHHHHHHhcC------CCcccHHHHHHHHHHHhcCH------
Q 014817          254 ------SYPRGLKVGIKALFALCLVKQTRYKAVAA-GAAETLVDRLAD------FDKCDAERALATVELLCRIP------  314 (418)
Q Consensus       254 ------~~~~~~~~a~~aL~~L~~~~~n~~~i~~~-G~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~~------  314 (418)
                            .++.+.+.|+++|+||+.+++++..+++. |+++.|+.+|.+      .+..+++.++.+|.+|+...      
T Consensus       149 ~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~  228 (457)
T 1xm9_A          149 NMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT  228 (457)
T ss_dssp             -----CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCC
T ss_pred             chhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcc
Confidence                  14567779999999999988899999998 999999999985      45678999999999997321      


Q ss_pred             ---------------------------------------------hHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHH
Q 014817          315 ---------------------------------------------AGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGA  348 (418)
Q Consensus       315 ---------------------------------------------~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~  348 (418)
                                                                   .+.+.+.. .|+++.|+.+|.+ .++.+++.|+++
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~l~~L~~lL~~~~~~~~~e~a~~a  307 (457)
T 1xm9_A          229 RYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYH-SDAIRTYLNLMGKSKKDATLEACAGA  307 (457)
T ss_dssp             HHHHHHHTC----------------------------CCCCCSSCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred             hhhhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHhC-cchHHHHHHHHhhcCCHHHHHHHHHH
Confidence                                                         11122333 4778999999977 578999999999


Q ss_pred             HHHHhcCCHH----H-HHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          349 LAALCSASER----C-QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       349 L~~l~~~~~~----~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      |+|||.++..    . +..+.++|+++.|+.+|.++ ++++++.|+++|++|+...+
T Consensus       308 L~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~~~~  363 (457)
T 1xm9_A          308 LQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHPL  363 (457)
T ss_dssp             HHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSGG
T ss_pred             HHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhcCHH
Confidence            9999985432    2 23344689999999999887 99999999999999988543

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.98  E-value=2.5e-31  Score=268.07  Aligned_cols=285  Identities=13%  Similarity=0.113  Sum_probs=237.6

Q ss_pred             ChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817          100 EPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       100 ~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      ....++.||+.|.+++.  ..+..|+.+|++++..++.+|..+++.|+||.|+++|.++       +.++++.|+++|.+
T Consensus        46 ~~~~i~~LV~~L~s~~~--~~q~~Aa~~L~~La~~~~~~k~~V~~~G~Ip~LV~LL~s~-------~~~vq~~Aa~AL~n  116 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLD--AVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLDHP-------KKEVHLGACGALKN  116 (584)
T ss_dssp             CCCCHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHGGGCS-------SHHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHCCCCH--HHHHHHHHHHHHHHcCChHHHHHHHHcCCcHHHHHHHCCC-------CHHHHHHHHHHHHH
Confidence            34579999999998754  3468899999999999999999999999999999999887       68999999999999


Q ss_pred             CCCC-hhHHHhhcccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc------
Q 014817          180 FPLT-ETECMEIASDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN------  251 (418)
Q Consensus       180 l~~~-~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~------  251 (418)
                      |+.+ +.++|..|++.|+|+.|+++|++ .+.++++.++++|++|   +.++++|..|+.  |+|++|++++..      
T Consensus       117 La~~~~~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nL---S~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~  191 (584)
T 3l6x_A          117 ISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNL---SSHDSIKMEIVD--HALHALTDEVIIPHSGWE  191 (584)
T ss_dssp             HTSSSCHHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHH---TTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC
T ss_pred             HHccCCHHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHH---hCCchhhHHHHh--ccHHHHHHHHhccccccc
Confidence            9985 45899999999999999999997 5789999999999999   788999999973  579999998720      


Q ss_pred             ----------CCCChhhhHHHHHHHHHHccccc-cHHHHHHc-CchHHHHHHhcC------CCcccHHHHHHHHHHHhcC
Q 014817          252 ----------LSSYPRGLKVGIKALFALCLVKQ-TRYKAVAA-GAAETLVDRLAD------FDKCDAERALATVELLCRI  313 (418)
Q Consensus       252 ----------~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~-G~v~~Lv~lL~~------~~~~~~~~a~~~L~~L~~~  313 (418)
                                ...++.++++|+++|+||+..++ +|..+++. |+++.|+.+|.+      .+...++.|+++|+||+..
T Consensus       192 ~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~  271 (584)
T 3l6x_A          192 REPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQ  271 (584)
T ss_dssp             ----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTT
T ss_pred             ccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcc
Confidence                      11157899999999999998875 58989885 667899999974      3567889999999999965


Q ss_pred             HhHH--------------------------HHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHHHhcCC----HHHHHH
Q 014817          314 PAGC--------------------------AEFAEHALTVPLLVKTILK-ISDRATEYAAGALAALCSAS----ERCQRD  362 (418)
Q Consensus       314 ~~~~--------------------------~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~l~~~~----~~~~~~  362 (418)
                      -+..                          +.+.. .++++.|+.+|.. .++.+++.|+++|+|||.++    ...+..
T Consensus       272 ~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~-~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~  350 (584)
T 3l6x_A          272 VHREIPQAERYQEAAPNVANNTGTSPARGYELLFQ-PEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSA  350 (584)
T ss_dssp             HHHHSTTCCC--------------CCCCGGGGGGS-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHH
T ss_pred             ccccccchhhhhhhcccccccccccCchhHHHHhc-ccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHH
Confidence            3211                          11111 2456778888865 68999999999999999855    234455


Q ss_pred             HHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          363 AVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       363 ~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      +.++|+++.|+.+|.++ ++.+++.|+++|++|+...+
T Consensus       351 v~~~~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~~~  387 (584)
T 3l6x_A          351 LRQEKALSAIADLLTNE-HERVVKAASGALRNLAVDAR  387 (584)
T ss_dssp             HTSHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTTCS
T ss_pred             HHHcCcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCChh
Confidence            56789999999999887 99999999999999998754

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.98  E-value=7.1e-31  Score=259.11  Aligned_cols=290  Identities=14%  Similarity=0.101  Sum_probs=241.0

Q ss_pred             HHHHHHHHHhhcCCC----------chhhhHHHHHHHHHhhhcChhhhhHHhhcChH----------HHHHHHhhccc--
Q 014817          102 SLVRTLLNQASSESN----------TYGSRLSALRRLRGLARDSDKNRSLISSHNVR----------AILSQVFFTNI--  159 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~----------~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i----------~~Lv~lL~~~~--  159 (418)
                      +-++.||+.|+..+.          +.+.+.+|+++|.+++...++..+..++.|++          +.+++++.+..  
T Consensus        70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  149 (458)
T 3nmz_A           70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEPG  149 (458)
T ss_dssp             TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSS
T ss_pred             CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhhHHHHHHHHhhccc
Confidence            457889999986432          23568999999999999888888877888888          66777776542  


Q ss_pred             -c-cccC---CChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC-----------CCHHHHHHHHHHHHHHH
Q 014817          160 -N-VKTA---SSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH-----------SSIEVRVNSAALIEIVL  223 (418)
Q Consensus       160 -~-~~~~---~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~-----------~~~~~~~~a~~~L~~L~  223 (418)
                       + .+.+   .-...+.+|+++|.|++.+. ++|..|.+.|++++|+.+|..           .++.++.+|+++|.||+
T Consensus       150 ~~~~~~~~~~~~~~~~~qAv~aL~nls~~~-e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa  228 (458)
T 3nmz_A          150 MDQDKNPMPAPVEHQICPAVCVLMKLSFDE-EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLT  228 (458)
T ss_dssp             SCCCSCC--CCCTTTTHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCCccchhhHHHHHHHHHHHHhcCCH-HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHh
Confidence             0 0000   00112349999999998875 899999999999999999952           24778999999999994


Q ss_pred             hcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc--cccHHHHHHcCchHHHHHHh-cCCCcccH
Q 014817          224 AGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV--KQTRYKAVAAGAAETLVDRL-ADFDKCDA  300 (418)
Q Consensus       224 ~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~--~~n~~~i~~~G~v~~Lv~lL-~~~~~~~~  300 (418)
                        ..++.++..+....|+|++|+.+|+++  ++++++.|+++|+||+..  ++++..+++.|+||.|+++| .+++..++
T Consensus       229 --~~~~~~k~~i~~~~GaIp~LV~LL~s~--~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~  304 (458)
T 3nmz_A          229 --FGDVANKATLCSMKGCMRALVAQLKSE--SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTL  304 (458)
T ss_dssp             --TTCHHHHHHHHHCHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHH
T ss_pred             --CCCcccHHHHHHcCCcHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHH
Confidence              344557777754467799999999988  899999999999999985  46899999999999999986 45677899


Q ss_pred             HHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCCh----HHHHHHHHHHHHHhc---CCHHHHHHHHhcChHHHH
Q 014817          301 ERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISD----RATEYAAGALAALCS---ASERCQRDAVSAGVLTQL  372 (418)
Q Consensus       301 ~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~----~~~~~A~~~L~~l~~---~~~~~~~~~~~~g~i~~L  372 (418)
                      +.++.+|.+|+. +++++..++..+|+++.|+++|.+.++    .+++.|+++|+||+.   ++++.++.+.+.|+++.|
T Consensus       305 ~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~L  384 (458)
T 3nmz_A          305 KSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTL  384 (458)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHH
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHH
Confidence            999999999998 889999998557999999999987554    489999999999996   789999999999999999


Q ss_pred             HHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          373 LLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       373 ~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      +.+|.++ +..+++.|+++|.+|+.
T Consensus       385 v~LL~~~-~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          385 LQHLKSH-SLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             HHHSSCS-CHHHHHHHHHHHHHHHS
T ss_pred             HHHHcCC-ChHHHHHHHHHHHHHHc
Confidence            9999877 99999999999999984

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.97  E-value=4.2e-30  Score=267.34  Aligned_cols=283  Identities=12%  Similarity=0.101  Sum_probs=245.7

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcCh-----------------------------hhh---hHHhhcChH
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSD-----------------------------KNR---SLISSHNVR  148 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~-----------------------------~~~---~~i~~~g~i  148 (418)
                      .+.++.||+.|++++..  .+..|++.|.+++...+                             .++   +.+++.|++
T Consensus       420 ~g~Ip~LV~LL~s~d~~--i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaV  497 (810)
T 3now_A          420 KASIHALMDLARGGNQS--CLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGIT  497 (810)
T ss_dssp             HHHHHHHHHHHHTTCGG--GHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHH
T ss_pred             cchHHHHHHHhCCCChH--HHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCH
Confidence            46789999999986543  45899999999997542                             233   678899999


Q ss_pred             HHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccc
Q 014817          149 AILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRS  228 (418)
Q Consensus       149 ~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~  228 (418)
                      |.|+.+|.++       ++.+++.|+++|.|++.+. ++|..+++.|++++|+.+|++++...++.|+++|.+|+   .+
T Consensus       498 p~LV~LL~s~-------s~~vqe~Aa~aL~NLA~d~-~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~---~~  566 (810)
T 3now_A          498 TALCALAKTE-------SHNSQELIARVLNAVCGLK-ELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIG---IT  566 (810)
T ss_dssp             HHHHHHHTCC-------CHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHH---HH
T ss_pred             HHHHHHHcCC-------CHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHh---cC
Confidence            9999999987       6899999999999999765 79999999999999999999999999999999999994   43


Q ss_pred             hhhhhHhhc--hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCCCcccHHHHHH
Q 014817          229 QELRAQISN--LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLADFDKCDAERALA  305 (418)
Q Consensus       229 ~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~  305 (418)
                      .+....+..  ..|++++|+.+|.++. +...+..|+++|.||+.. ++++..++++|+++.|+.+|.+++..+++.|++
T Consensus       567 ~~p~~~~~~~~~~~aIppLv~LL~~~~-~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~~~Vq~~A~~  645 (810)
T 3now_A          567 INPEVSFSGQRSLDVIRPLLNLLQQDC-TALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDHLYLTRAAAQ  645 (810)
T ss_dssp             SCHHHHTTTHHHHHTHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCCTTHHHHHHH
T ss_pred             CChhhhhcchhhhcHHHHHHHHhCCCC-cHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHH
Confidence            332333321  2479999999998652 345567899999999987 478999999999999999999999999999999


Q ss_pred             HHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHh-cChHHHHHHHHhhCCCHHH
Q 014817          306 TVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVS-AGVLTQLLLLVQSDCTDRA  384 (418)
Q Consensus       306 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~~~  384 (418)
                      +|.||+.+++.+..+.+..|+++.|+.++...+..+++.|+++|.+|+.+++...+.+++ .|+++.|+.+|.++ +..+
T Consensus       646 ~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~-d~~v  724 (810)
T 3now_A          646 CLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANP-SPAV  724 (810)
T ss_dssp             HHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCS-SHHH
T ss_pred             HHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCC-CHHH
Confidence            999999999999988864589999999999999999999999999999988888888898 89999999999877 9999


Q ss_pred             HHHHHHHHHHHHhh
Q 014817          385 KRKAQLLLKLLRDS  398 (418)
Q Consensus       385 ~~~A~~~L~~l~~~  398 (418)
                      |+.|+++|.|+...
T Consensus       725 q~~A~~aL~NL~~~  738 (810)
T 3now_A          725 QHRGIVIILNMINA  738 (810)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhC
Confidence            99999999999874

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=7.1e-30  Score=258.24  Aligned_cols=284  Identities=10%  Similarity=0.105  Sum_probs=250.4

Q ss_pred             ChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817          100 EPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       100 ~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      +.+.|+.||+.|+.++.+ ..+..|+++|.++++.+++++..+++.|++|.|+.+|.++       +.++++.|+++|++
T Consensus        98 ~~G~ip~LV~lL~~~~~~-~lq~~Aa~aL~nias~~~e~~~~vv~~GaIp~Lv~lL~s~-------~~~v~e~A~~aL~n  169 (510)
T 3ul1_B           98 RAGLIPKFVSFLGKTDCS-PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-------HAHISEQAVWALGN  169 (510)
T ss_dssp             HTTHHHHHHHHTTCTTCH-HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHCCCCCH-HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHH
Confidence            356789999999866433 3468999999999999999999999999999999999887       68999999999999


Q ss_pred             CCCChhHHHhhcccCCchHHHHHHhcCCC-----HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC
Q 014817          180 FPLTETECMEIASDADKITSLSSLLFHSS-----IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS  254 (418)
Q Consensus       180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~-----~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~  254 (418)
                      |+.+.+++|..+.+.|++++|+.+|.+.+     ...+..++++|.++   +.+......+....|+++.|+.+|.+.  
T Consensus       170 La~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl---~~~~~~~~~~~~~~~~lp~L~~LL~~~--  244 (510)
T 3ul1_B          170 IAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL---CRNKNPAPPLDAVEQILPTLVRLLHHN--  244 (510)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH---HCCCSSCCCHHHHHHHHHHHHHHTTCS--
T ss_pred             HHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH---hhcccchhHHHHHHhHHHHHHHHHhcC--
Confidence            99887788999999999999999998654     56788999999999   565555555444468999999999998  


Q ss_pred             ChhhhHHHHHHHHHHcccccc-HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHH
Q 014817          255 YPRGLKVGIKALFALCLVKQT-RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVK  332 (418)
Q Consensus       255 ~~~~~~~a~~aL~~L~~~~~n-~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~  332 (418)
                      +++++..|+++|.+|+....+ ...+++.|+++.|+.+|.+++..++..++.+|.+|+. ++..+..+.+ .|+++.|+.
T Consensus       245 ~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~~~~~~i~~-~g~l~~L~~  323 (510)
T 3ul1_B          245 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPS  323 (510)
T ss_dssp             CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGCC-
T ss_pred             CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHHHHHHHhhcCCHHHHHHHhh-ccchHHHHH
Confidence            899999999999999987654 4556789999999999999999999999999999985 5667777777 599999999


Q ss_pred             HHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          333 TILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       333 ~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +|.+.+..+++.|+++|.||+.+++..+..+.+.|+++.|+.++.++ +..+|+.|+++|.|++..
T Consensus       324 LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~~  388 (510)
T 3ul1_B          324 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTSG  388 (510)
T ss_dssp             CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcc
Confidence            99999999999999999999999999999999999999999999877 999999999999999875

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.97  E-value=2.8e-29  Score=255.08  Aligned_cols=284  Identities=10%  Similarity=0.103  Sum_probs=251.5

Q ss_pred             ChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817          100 EPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       100 ~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      +.+.|+.||+.|+.++.+ ..+..|+++|.+++..++.++..+++.|++|.|+.+|.++       +.++++.|+++|++
T Consensus       117 ~~G~ip~Lv~lL~~~~~~-~~q~~Aa~aL~nia~~~~~~~~~vv~~Gaip~Lv~LL~s~-------~~~v~e~A~~aL~n  188 (529)
T 3tpo_A          117 RAGLIPKFVSFLGKTDCS-PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-------HAHISEQAVWALGN  188 (529)
T ss_dssp             HTTHHHHHHHHHTCTTCH-HHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHcCCCCH-HHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHH
Confidence            346789999999866533 3468899999999999999999999999999999999888       58999999999999


Q ss_pred             CCCChhHHHhhcccCCchHHHHHHhcCCC-----HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC
Q 014817          180 FPLTETECMEIASDADKITSLSSLLFHSS-----IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS  254 (418)
Q Consensus       180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~-----~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~  254 (418)
                      |+.+.+++|..+.+.|++++|+.+|...+     ...+..++++|.++   +.+......+....|+++.|+.+|.++  
T Consensus       189 La~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl---~~~~~~~~~~~~~~~~lp~L~~LL~~~--  263 (529)
T 3tpo_A          189 IAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL---CRNKNPAPPLDAVEQILPTLVRLLHHN--  263 (529)
T ss_dssp             HHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHH---HCCCTTCCCHHHHHHHHHHHHHHTTSS--
T ss_pred             HhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHH---HhcccchhhHHHHhhHHHHHHHHhcCC--
Confidence            99887789999999999999999997653     56788999999999   666555554444468999999999998  


Q ss_pred             ChhhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHH
Q 014817          255 YPRGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVK  332 (418)
Q Consensus       255 ~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~  332 (418)
                      +++++..|+++|.+|+...+ ....+++.|+++.|+.+|.+++..++..++.+|.+|+. +++.+..+.. .|+++.|+.
T Consensus       264 ~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~i~~-~g~l~~L~~  342 (529)
T 3tpo_A          264 DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVID-AGALAVFPS  342 (529)
T ss_dssp             CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTGGGGHHH
T ss_pred             cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHHHHHHHHHHccchHHHHHHhh-cccHHHHHH
Confidence            89999999999999998765 45556789999999999999999999999999999985 5667777777 599999999


Q ss_pred             HHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          333 TILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       333 ~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +|.+.+..+++.|+++|.||+.+++..+..+.+.|+++.|+.++.++ +..+|+.|+++|.|+...
T Consensus       343 LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~~  407 (529)
T 3tpo_A          343 LLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTSG  407 (529)
T ss_dssp             HTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999887 999999999999999875

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=7.6e-30  Score=254.40  Aligned_cols=284  Identities=16%  Similarity=0.135  Sum_probs=238.5

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhh-cccccccCCChhHHHHHHHHHhc
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFF-TNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~-~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      .+.++.||+.|++++.+  .+..|+++|++++..++.+|..+++.|++|.|+++|. ++       ++++++.|+++|.+
T Consensus        43 ~g~i~~Lv~lL~s~~~~--~~~~A~~aL~nLa~~~~~~k~~i~~~G~i~~Lv~lL~~~~-------~~~~~~~a~~aL~n  113 (457)
T 1xm9_A           43 LGGICKLVDLLRSPNQN--VQQAAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTG-------NAEIQKQLTGLLWN  113 (457)
T ss_dssp             TTHHHHHHHHTTSSCHH--HHHHHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHHHTTCC-------CHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHcCCCHH--HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHhhCC-------CHHHHHHHHHHHHH
Confidence            46789999999976543  4689999999999988999999999999999999998 54       58999999999999


Q ss_pred             CCCChhHHHhhcccCCchHHHHHHhc--------CC--------CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHH
Q 014817          180 FPLTETECMEIASDADKITSLSSLLF--------HS--------SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFE  243 (418)
Q Consensus       180 l~~~~~~~~~~i~~~g~i~~Lv~~L~--------~~--------~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~  243 (418)
                      |+.++ ++|..+++ |+++.|+++|.        ++        +.+++..|+++|+||   +.+++++..+....|+++
T Consensus       114 La~~~-~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nL---s~~~~~~~~i~~~~g~i~  188 (457)
T 1xm9_A          114 LSSTD-ELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNL---SSADAGRQTMRNYSGLID  188 (457)
T ss_dssp             HHTSS-STHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHH---TTSHHHHHHHTTSTTHHH
T ss_pred             HhcCH-HhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHH---ccCHHHHHHHHHcCCCHH
Confidence            99885 78998999 99999999993        32        355666999999999   666888888876339999


Q ss_pred             HHHHHhhcC------C----------------------------------------------------------------
Q 014817          244 GVIDILKNL------S----------------------------------------------------------------  253 (418)
Q Consensus       244 ~Lv~lL~~~------~----------------------------------------------------------------  253 (418)
                      +|+.+|+++      .                                                                
T Consensus       189 ~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
T 1xm9_A          189 SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE  268 (457)
T ss_dssp             HHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCC
T ss_pred             HHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccc
Confidence            999888741      0                                                                


Q ss_pred             ---------------------------CChhhhHHHHHHHHHHccccccH-----HHHH-HcCchHHHHHHhcCCCcccH
Q 014817          254 ---------------------------SYPRGLKVGIKALFALCLVKQTR-----YKAV-AAGAAETLVDRLADFDKCDA  300 (418)
Q Consensus       254 ---------------------------~~~~~~~~a~~aL~~L~~~~~n~-----~~i~-~~G~v~~Lv~lL~~~~~~~~  300 (418)
                                                 .++.+++.|+|+|+||+..+...     ..++ ++|++|.|+++|.+++.+++
T Consensus       269 ~~~~~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~  348 (457)
T 1xm9_A          269 EETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVV  348 (457)
T ss_dssp             CCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHH
T ss_pred             cccCchHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHH
Confidence                                       02456667899999999765321     2334 68999999999999999999


Q ss_pred             HHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCC------hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHH
Q 014817          301 ERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKIS------DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLL  374 (418)
Q Consensus       301 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~------~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~  374 (418)
                      ..|+++|.+|+.+++.+..+..  |+++.|+++|...+      ..+...++++|.++..++++....+.+.|++++|+.
T Consensus       349 ~~A~~aL~nls~~~~~~~~i~~--~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L~~  426 (457)
T 1xm9_A          349 RSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIIN  426 (457)
T ss_dssp             HHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHH--hhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHH
Confidence            9999999999998888877764  78999999998754      357789999999999988899999999999999999


Q ss_pred             HHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          375 LVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       375 ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ++.++.+++++++|.++|.++-.+.+
T Consensus       427 L~~~~~~~~i~~~A~~~L~~~~~~~~  452 (457)
T 1xm9_A          427 LCRSSASPKAAEAARLLLSDMWSSKE  452 (457)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTSSSTT
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHcchh
Confidence            99766589999999999998877655

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.97  E-value=4.5e-30  Score=258.93  Aligned_cols=284  Identities=15%  Similarity=0.144  Sum_probs=233.9

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhc-ChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARD-SDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      .+.|+.||+.|++++.+  .+..|+++|++++.. ++.+|..|++.|+||.|+++|.+..      +.++++.|+.+|.+
T Consensus        89 ~G~Ip~LV~LL~s~~~~--vq~~Aa~AL~nLa~~~~~~nk~~I~~~GaIp~LV~LL~s~~------~~~~~e~aa~aL~n  160 (584)
T 3l6x_A           89 LKGIPVLVGLLDHPKKE--VHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKAR------DMDLTEVITGTLWN  160 (584)
T ss_dssp             TTHHHHHHHGGGCSSHH--HHHHHHHHHHHHTSSSCHHHHHHHHHTTHHHHHHHHHHHCC------SHHHHHHHHHHHHH
T ss_pred             cCCcHHHHHHHCCCCHH--HHHHHHHHHHHHHccCCHHHHHHHHHcCCHHHHHHHHcCCC------CHHHHHHHHHHHHH
Confidence            35789999999987543  468999999999985 6899999999999999999998753      57899999999999


Q ss_pred             CCCChhHHHhhcccCCchHHHHHHhc------------------CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhh
Q 014817          180 FPLTETECMEIASDADKITSLSSLLF------------------HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEI  241 (418)
Q Consensus       180 l~~~~~~~~~~i~~~g~i~~Lv~~L~------------------~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~  241 (418)
                      |+..+ ++|..|++ ++|+.|+++|.                  ..+.+++++|+++|+||+  +.++++|..|....|+
T Consensus       161 LS~~~-~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs--~~~~~~R~~i~~~~Gl  236 (584)
T 3l6x_A          161 LSSHD-SIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVS--SERSEARRKLRECDGL  236 (584)
T ss_dssp             HTTSG-GGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHT--SSCHHHHHHHHHSTTH
T ss_pred             HhCCc-hhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHh--cCCHHHHHHHHHcCCc
Confidence            99876 88988885 57999999872                  225799999999999994  3445668887765677


Q ss_pred             HHHHHHHhhcC-----C---------------------------------------------------------------
Q 014817          242 FEGVIDILKNL-----S---------------------------------------------------------------  253 (418)
Q Consensus       242 i~~Lv~lL~~~-----~---------------------------------------------------------------  253 (418)
                      +++|+.+|++.     .                                                               
T Consensus       237 i~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~L  316 (584)
T 3l6x_A          237 VDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISL  316 (584)
T ss_dssp             HHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHH
Confidence            77777776531     0                                                               


Q ss_pred             ----CChhhhHHHHHHHHHHcccc-----ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhcc
Q 014817          254 ----SYPRGLKVGIKALFALCLVK-----QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHA  324 (418)
Q Consensus       254 ----~~~~~~~~a~~aL~~L~~~~-----~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~  324 (418)
                          .++.++++|++||+||+.+.     .++..+.+.|++|.|+.+|.+++..+++.++++|.+|+.++.++..| . .
T Consensus       317 L~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I-~-~  394 (584)
T 3l6x_A          317 LKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-G-K  394 (584)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCSCHHHH-H-H
T ss_pred             HccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChhHHHHH-H-h
Confidence                03455667777777776543     23334445799999999999999999999999999999988888777 4 3


Q ss_pred             CChHHHHHHHhcC--------ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC-CCHHHHHHHHHHHHHH
Q 014817          325 LTVPLLVKTILKI--------SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD-CTDRAKRKAQLLLKLL  395 (418)
Q Consensus       325 g~i~~Lv~~l~~~--------~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~~~~~~A~~~L~~l  395 (418)
                      |+++.||++|.++        +..+...|+++|.||+.++++.++.+.+.|++++|+.++.++ .++++++.|+++|.+|
T Consensus       395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~nl  474 (584)
T 3l6x_A          395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQTI  474 (584)
T ss_dssp             HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHHHH
Confidence            8999999999875        457788999999999998999999999999999999999764 4789999999999999


Q ss_pred             Hhh
Q 014817          396 RDS  398 (418)
Q Consensus       396 ~~~  398 (418)
                      ..+
T Consensus       475 ~~~  477 (584)
T 3l6x_A          475 WGY  477 (584)
T ss_dssp             HTS
T ss_pred             HcC
Confidence            753

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.97  E-value=5.8e-30  Score=258.88  Aligned_cols=285  Identities=15%  Similarity=0.102  Sum_probs=244.8

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhc-ChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARD-SDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF  180 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l  180 (418)
                      ..++.+|+.+++++.  +.+..|+..+|++.+. .....+.+++.|+||.|+++|...+      +++++..|+++|.||
T Consensus        57 ~~i~~~v~~l~s~d~--~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~------~~~lq~~Aa~aL~ni  128 (510)
T 3ul1_B           57 WSVEDIVKGINSNNL--ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD------CSPIQFESAWALTNI  128 (510)
T ss_dssp             CCHHHHHHHHTSSCH--HHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTT------CHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHhcCCCH--HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCC------CHHHHHHHHHHHHHH
Confidence            458999999999854  4568999999987653 3344678999999999999998764      689999999999999


Q ss_pred             CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC---Chh
Q 014817          181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS---YPR  257 (418)
Q Consensus       181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~---~~~  257 (418)
                      +.++++++..+++.|+|+.|+.+|++++.++++.|+++|+||+  ...++.+..+.. .|++++|+.+|.....   ...
T Consensus       129 as~~~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa--~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~  205 (510)
T 3ul1_B          129 ASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA--GDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACG  205 (510)
T ss_dssp             HTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHH
T ss_pred             hcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH--hCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHH
Confidence            8877789999999999999999999999999999999999994  445677777755 7999999999987521   234


Q ss_pred             hhHHHHHHHHHHccccccHHHH-HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc
Q 014817          258 GLKVGIKALFALCLVKQTRYKA-VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK  336 (418)
Q Consensus       258 ~~~~a~~aL~~L~~~~~n~~~i-~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~  336 (418)
                      .+..++++|.+++.+..+...+ ...|++|.|+.+|.+.+.+++..++++|.+|+..+..+..++...|+++.|+++|.+
T Consensus       206 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~  285 (510)
T 3ul1_B          206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA  285 (510)
T ss_dssp             HHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC
Confidence            6788999999999887654444 447899999999999999999999999999998766555554446999999999999


Q ss_pred             CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       337 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      .+..++..|+++|.+|+.+++..+..+++.|+++.|+.+|.++ ++.+|+.|+++|.+|+..
T Consensus       286 ~~~~v~~~al~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a~  346 (510)
T 3ul1_B          286 TELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAG  346 (510)
T ss_dssp             SCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTTS
T ss_pred             CChhhhhHHHHHHHHhhcCCHHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHcC
Confidence            9999999999999999998999999999999999999999777 999999999999999864

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.96  E-value=2.8e-29  Score=240.68  Aligned_cols=246  Identities=14%  Similarity=0.066  Sum_probs=213.1

Q ss_pred             HHHHHHHHHhhcC---------CCchhhhHHHHHHHHHhhhcChhhhhHHhh-cChHHHHHHHhhcccccccCCChhHHH
Q 014817          102 SLVRTLLNQASSE---------SNTYGSRLSALRRLRGLARDSDKNRSLISS-HNVRAILSQVFFTNINVKTASSPELAH  171 (418)
Q Consensus       102 ~~i~~lv~~L~~~---------~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~v~~  171 (418)
                      +.++.|++.|.+.         ..+...+..|++.|.+++..++.+|..+.. .|+||.|+++|.++       ++++++
T Consensus        73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-------~~~v~~  145 (354)
T 3nmw_A           73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSE-------SEDLQQ  145 (354)
T ss_dssp             THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGCS-------CHHHHH
T ss_pred             CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCCC-------CHHHHH
Confidence            5678888888531         011234689999999999988889988865 45699999999876       589999


Q ss_pred             HHHHHHhcCCCC-hhHHHhhcccCCchHHHHHHh-cCCCHHHHHHHHHHHHHHHhccc-chhhhhHhhchhhhHHHHHHH
Q 014817          172 ESLALLVMFPLT-ETECMEIASDADKITSLSSLL-FHSSIEVRVNSAALIEIVLAGMR-SQELRAQISNLDEIFEGVIDI  248 (418)
Q Consensus       172 ~a~~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~s~-~~~~~~~i~~~~g~i~~Lv~l  248 (418)
                      .|+++|++|+.. ++++|..+++.|+|+.|+++| ++++.++++.|+++|+||   +. .++++..|+...|+|+.|+++
T Consensus       146 ~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nL---s~~~~~nk~~i~~~~Gai~~Lv~l  222 (354)
T 3nmw_A          146 VIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL---SAHCTENKADICAVDGALAFLVGT  222 (354)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHSTTHHHHHHHH
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHH---HccChhhhHHHHHhcCcHHHHHHH
Confidence            999999999985 457899999999999999975 667899999999999999   55 778888887447999999999


Q ss_pred             hhcCCCCh---hhhHHHHHHHHHHcc----ccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHH
Q 014817          249 LKNLSSYP---RGLKVGIKALFALCL----VKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEF  320 (418)
Q Consensus       249 L~~~~~~~---~~~~~a~~aL~~L~~----~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i  320 (418)
                      |.++. +.   ++++.|+++|+||+.    +++++..++++|+++.|+++|.+++..+++.|+++|.+|+ .++++++.+
T Consensus       223 L~~~~-~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i  301 (354)
T 3nmw_A          223 LTYRS-QTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEAL  301 (354)
T ss_dssp             TTCCC-SSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHH
T ss_pred             hccCC-CcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            99773 22   589999999999996    7789999999999999999999999999999999999999 578999999


Q ss_pred             HhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHH
Q 014817          321 AEHALTVPLLVKTILKISDRATEYAAGALAALCSASERC  359 (418)
Q Consensus       321 ~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~  359 (418)
                      .+ .|+++.|++++.+++..+++.|+++|.||+.+++..
T Consensus       302 ~~-~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~  339 (354)
T 3nmw_A          302 WD-MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAK  339 (354)
T ss_dssp             HH-TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHH
Confidence            98 599999999999999999999999999999965553

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.96  E-value=1.1e-28  Score=250.76  Aligned_cols=284  Identities=15%  Similarity=0.109  Sum_probs=245.2

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhh-cChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLAR-DSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      .++.+++.+.+.+.  +.+..|+..++++.+ +.....+.+++.|++|.|+++|...+      +++++..|+++|.+++
T Consensus        77 ~l~~lv~~l~s~d~--~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~------~~~~q~~Aa~aL~nia  148 (529)
T 3tpo_A           77 SVEDIVKGINSNNL--ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD------CSPIQFESAWALTNIA  148 (529)
T ss_dssp             CHHHHHHHHTSSCH--HHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTT------CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCH--HHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCC------CHHHHHHHHHHHHHHH
Confidence            57899999998754  346899999998764 34445678999999999999998764      6899999999999999


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC---Chhh
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS---YPRG  258 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~---~~~~  258 (418)
                      .+..+.+..+++.|+|+.|+.+|.+++.++++.|+++|+||+  ..+++++..+.. .|++++|+.+|.....   ....
T Consensus       149 ~~~~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa--~~~~~~r~~i~~-~g~i~~Ll~lL~~~~~~~~~~~~  225 (529)
T 3tpo_A          149 SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA--GAGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGY  225 (529)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTCHHHHHHTTCSSCGGGSCHHH
T ss_pred             cCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh--ccCHHHHHHHHH-cCCcHHHHHHHhccchhHhHHHH
Confidence            887788899999999999999999999999999999999995  456778888865 7999999999986521   2346


Q ss_pred             hHHHHHHHHHHccccccHHHH-HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcC
Q 014817          259 LKVGIKALFALCLVKQTRYKA-VAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI  337 (418)
Q Consensus       259 ~~~a~~aL~~L~~~~~n~~~i-~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~  337 (418)
                      ...++++|.+++.+..+...+ ...|++|.|+.+|.+++..++..++++|.+|+..+..+..++...|+++.|+++|.+.
T Consensus       226 ~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~  305 (529)
T 3tpo_A          226 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT  305 (529)
T ss_dssp             HHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC
Confidence            788999999999887654443 4478999999999999999999999999999977655555444469999999999999


Q ss_pred             ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       338 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +..++..|+.+|.||+.+++.....+.+.|+++.|+.+|.++ ++.+|+.|+++|.+|+..
T Consensus       306 ~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~-~~~i~~~a~~aL~nl~~~  365 (529)
T 3tpo_A          306 ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITAG  365 (529)
T ss_dssp             CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHHTS
T ss_pred             ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcc
Confidence            999999999999999998999999999999999999999877 999999999999999875

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.96  E-value=2.2e-28  Score=254.42  Aligned_cols=283  Identities=14%  Similarity=0.067  Sum_probs=245.5

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +.++.|+..|++++++  .+..|+++|.+++. ++.+|..+++.|++|+|+.+|.++       +...++.|+++|.+|+
T Consensus       495 GaVp~LV~LL~s~s~~--vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~-------~~~~k~~Aa~AL~nL~  564 (810)
T 3now_A          495 GITTALCALAKTESHN--SQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEG-------TEKGKRHATQALARIG  564 (810)
T ss_dssp             THHHHHHHHHTCCCHH--HHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSS-------CHHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHcCCCHH--HHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccC-------CHHHHHHHHHHHHHHh
Confidence            4578899999887543  46899999999985 577999999999999999999877       4788999999999987


Q ss_pred             CChhHHHhhcc---cCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChh
Q 014817          182 LTETECMEIAS---DADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPR  257 (418)
Q Consensus       182 ~~~~~~~~~i~---~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  257 (418)
                      .+.+. ...+.   ..|++++|+.+|.++ +...+..|+++|.||+  +..++++..|.. .|+++.|+.+|.++  ++.
T Consensus       565 ~~~~p-~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa--~~~d~~~~~Ii~-aG~l~~Lv~LL~s~--~~~  638 (810)
T 3now_A          565 ITINP-EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA--SMNESVRQRIIK-EQGVSKIEYYLMED--HLY  638 (810)
T ss_dssp             HHSCH-HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHT--TSCHHHHHHHHH-TTHHHHHHHHHHSC--CTT
T ss_pred             cCCCh-hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHh--cCCHHHHHHHHH-cCCHHHHHHHHcCC--CHH
Confidence            64312 22221   146999999999876 4555678999999995  445788888876 78999999999998  899


Q ss_pred             hhHHHHHHHHHHccccccHHHHHH-cCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHh
Q 014817          258 GLKVGIKALFALCLVKQTRYKAVA-AGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTIL  335 (418)
Q Consensus       258 ~~~~a~~aL~~L~~~~~n~~~i~~-~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~  335 (418)
                      +++.|+++|.||+.+++.+..+++ .|+++.|+.++.+.+..+++.|+++|.+|+. ++...+.+++.+|+++.|+.++.
T Consensus       639 Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~  718 (810)
T 3now_A          639 LTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA  718 (810)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC
Confidence            999999999999999999888886 7999999999999899999999999999998 78888888884599999999999


Q ss_pred             cCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC--CCHHHHHHHHHHHHHHHhhCC
Q 014817          336 KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD--CTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       336 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      +++..++..|+++|.|++.++++....+.+.|++++|..+++..  .+.++.+.|..+|.++-.+..
T Consensus       719 s~d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~  785 (810)
T 3now_A          719 NPSPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRI  785 (810)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCC
Confidence            99999999999999999988889999999999999999999643  478999999999999998754

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=1.2e-27  Score=218.70  Aligned_cols=241  Identities=20%  Similarity=0.179  Sum_probs=221.5

Q ss_pred             ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817          146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG  225 (418)
Q Consensus       146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~  225 (418)
                      |+++.|+++|.++       +++++..|+.+|.+++....+++..+.+.|+++.|+++|++++.+++..++++|.++   
T Consensus         2 ~~i~~L~~~L~~~-------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l---   71 (252)
T 4hxt_A            2 NDVEKLVKLLTST-------DSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANI---   71 (252)
T ss_dssp             CHHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH---
T ss_pred             CcHHHHHHHHcCC-------CHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHH---
Confidence            6899999999887       589999999999999887767899999999999999999999999999999999999   


Q ss_pred             ccc-hhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHc-cccccHHHHHHcCchHHHHHHhcCCCcccHHHH
Q 014817          226 MRS-QELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALC-LVKQTRYKAVAAGAAETLVDRLADFDKCDAERA  303 (418)
Q Consensus       226 s~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~-~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a  303 (418)
                      +.. ++++..+.. .|+++.|+.+|+++  ++.++..|+++|.+|+ .+++++..+++.|+++.|+++|.+++..++..+
T Consensus        72 ~~~~~~~~~~~~~-~~~i~~l~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a  148 (252)
T 4hxt_A           72 ASGPDEAIKAIVD-AGGVEVLVKLLTST--DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEA  148 (252)
T ss_dssp             TTSCHHHHHHHHH-TTHHHHHHHHTTCS--SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             HcCChHHHHHHHH-CCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence            555 888888865 79999999999988  8999999999999999 566789999999999999999999999999999


Q ss_pred             HHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCH
Q 014817          304 LATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTD  382 (418)
Q Consensus       304 ~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~  382 (418)
                      +++|.+|+. .++.+..+.+ .|+++.|++++.+.++.++..|+++|.+++.+++..++.+.+.|+++.|+.+++++ ++
T Consensus       149 ~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~  226 (252)
T 4hxt_A          149 ARALANIASGPDEAIKAIVD-AGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVDAGGVEVLQKLLTST-DS  226 (252)
T ss_dssp             HHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHHTTHHHHHHHGGGCS-CH
T ss_pred             HHHHHHHHcCCHHHHHHHHH-CcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHCCC-cH
Confidence            999999997 4556677777 59999999999999999999999999999998899999999999999999999877 99


Q ss_pred             HHHHHHHHHHHHHHhhCCC
Q 014817          383 RAKRKAQLLLKLLRDSWPQ  401 (418)
Q Consensus       383 ~~~~~A~~~L~~l~~~~~~  401 (418)
                      .+++.|.++|.+|..+...
T Consensus       227 ~v~~~a~~~L~~l~~~~~~  245 (252)
T 4hxt_A          227 EVQKEAQRALENIKSGGWL  245 (252)
T ss_dssp             HHHHHHHHHHHHHHHTCBC
T ss_pred             HHHHHHHHHHHHHHcCCCc
Confidence            9999999999999998763

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.96  E-value=1.2e-27  Score=242.92  Aligned_cols=285  Identities=16%  Similarity=0.099  Sum_probs=248.7

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcCh-hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSD-KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      ...++.+++.|.+++  ...+..|+..|+.+++... .+...+++.|++|.|+.+|.+++      ++.++..|+++|.+
T Consensus        73 ~~~l~~lv~~L~s~~--~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~------~~~v~~~A~~~L~~  144 (528)
T 4b8j_A           73 LESLPAMIGGVYSDD--NNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTRED------FPQLQFEAAWALTN  144 (528)
T ss_dssp             --CHHHHHHHHTSSC--HHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTT------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCC------CHHHHHHHHHHHHH
Confidence            356899999998774  3456899999999976554 67788999999999999998773      48999999999999


Q ss_pred             CCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817          180 FPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      ++.+..+++..+++.|+++.|+.+|.+++.+++..|+++|.+|+  ...+.++..+.. .|++++|+.+|.... ++.++
T Consensus       145 l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~--~~~~~~~~~i~~-~g~l~~Ll~lL~~~~-~~~v~  220 (528)
T 4b8j_A          145 IASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA--GDSPKCRDLVLA-NGALLPLLAQLNEHT-KLSML  220 (528)
T ss_dssp             HHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH--HTCHHHHHHHHH-TTCHHHHHHTCCTTC-CHHHH
T ss_pred             HhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHh--CCChhhHHHHHH-CCcHHHHHHHHhcCC-CHHHH
Confidence            99886688999999999999999999999999999999999995  445667777765 689999999995433 89999


Q ss_pred             HHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHH-HHHHhccCChHHHHHHHhcCC
Q 014817          260 KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGC-AEFAEHALTVPLLVKTILKIS  338 (418)
Q Consensus       260 ~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g~i~~Lv~~l~~~~  338 (418)
                      ..|+++|.+|+....+.......|+++.|+.+|.+.+..++..++++|.+|+.....+ +.+.. .|+++.|+.+|.+.+
T Consensus       221 ~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~  299 (528)
T 4b8j_A          221 RNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDKIQAVIE-AGVCPRLVELLLHPS  299 (528)
T ss_dssp             HHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHHHHHHHH-TTCHHHHHHHTTCSC
T ss_pred             HHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCHHHHHHHHHcCCC
Confidence            9999999999988766666677999999999999999999999999999999766555 45566 599999999999999


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      ..++..|+++|.+|+.+++...+.+.+.|+++.|+.+|.++.++.+++.|+++|.+|+..
T Consensus       300 ~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~  359 (528)
T 4b8j_A          300 PSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAG  359 (528)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTS
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCC
Confidence            999999999999999988999999999999999999997665899999999999999863

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.96  E-value=6.8e-27  Score=237.41  Aligned_cols=281  Identities=14%  Similarity=0.146  Sum_probs=249.0

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +.++.|++.|++++. ...+..|+++|.+++..++.++..+++.|+++.|+.+|.++       +.++++.|+++|.+|+
T Consensus       117 g~v~~Lv~lL~~~~~-~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~-------~~~v~~~a~~aL~~l~  188 (528)
T 4b8j_A          117 GVVPRFVQFLTREDF-PQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSS-------SDDVREQAVWALGNVA  188 (528)
T ss_dssp             TCHHHHHHHHTCTTC-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCCCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCC-------CHHHHHHHHHHHHHHh
Confidence            458899999987642 33468999999999998899999999999999999999886       5899999999999999


Q ss_pred             CChhHHHhhcccCCchHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817          182 LTETECMEIASDADKITSLSSLL-FHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK  260 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  260 (418)
                      .+...++..+...|+++.|+.+| .+.+..++..++++|.+|   +........... .|+++.|+.+|.+.  ++.++.
T Consensus       189 ~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L---~~~~~~~~~~~~-~~~l~~L~~lL~~~--~~~v~~  262 (528)
T 4b8j_A          189 GDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNF---CRGKPQPSFEQT-RPALPALARLIHSN--DEEVLT  262 (528)
T ss_dssp             HTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHH---HCSSSCCCHHHH-TTHHHHHHHHTTCC--CHHHHH
T ss_pred             CCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHH---HcCCCCCcHHHH-HHHHHHHHHHHCCC--CHHHHH
Confidence            77667899999999999999999 667899999999999999   444333333333 68999999999988  899999


Q ss_pred             HHHHHHHHHccccccH-HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcC-
Q 014817          261 VGIKALFALCLVKQTR-YKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKI-  337 (418)
Q Consensus       261 ~a~~aL~~L~~~~~n~-~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~-  337 (418)
                      .|+++|.+|+...+++ ..+++.|+++.|+.+|.+++..++..|+++|.+|+. .+..++.+.. .|+++.|+.+|.+. 
T Consensus       263 ~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~-~~~l~~L~~lL~~~~  341 (528)
T 4b8j_A          263 DACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIID-HQALPCLLSLLTQNL  341 (528)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHH-hhhHHHHHHHHcCCC
Confidence            9999999999876654 567889999999999999889999999999999996 5667777777 59999999999998 


Q ss_pred             ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       338 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +..++..|+++|.||+.++++....+++.|+++.|+.+|.++ ++.+++.|+++|.++...
T Consensus       342 ~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          342 KKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATSG  401 (528)
T ss_dssp             CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence            999999999999999998888888999999999999999888 999999999999999987

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=2.7e-27  Score=216.86  Aligned_cols=239  Identities=15%  Similarity=0.152  Sum_probs=214.8

Q ss_pred             ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817          146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG  225 (418)
Q Consensus       146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~  225 (418)
                      ...+.++..|.++       +++++..|+.+|.++....++++..+.+.|+++.|+++|++++++++..|+++|.+++  
T Consensus        12 ~~~~~~~~~L~s~-------~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~--   82 (252)
T 4db8_A           12 SELPQMTQQLNSD-------DMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA--   82 (252)
T ss_dssp             CSHHHHHHHHHSS-------CSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHT--
T ss_pred             chHHHHHHHHcCC-------CHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHh--
Confidence            4588899999888       5789999999997654445578889999999999999999999999999999999994  


Q ss_pred             ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH-HHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817          226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR-YKAVAAGAAETLVDRLADFDKCDAERAL  304 (418)
Q Consensus       226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~-~~i~~~G~v~~Lv~lL~~~~~~~~~~a~  304 (418)
                      ..+++++..+.. .|+++.|+.+|+++  ++.++..|+++|.||+.+.+++ ..+++.|+++.|+++|.+++..++..++
T Consensus        83 ~~~~~~~~~i~~-~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~  159 (252)
T 4db8_A           83 SGGNEQIQAVID-AGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEAL  159 (252)
T ss_dssp             TSCHHHHHHHHH-TTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHH
T ss_pred             cCCHHHHHHHHH-cCCHHHHHHHHcCC--CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence            347888888865 79999999999998  8999999999999999999888 8889999999999999998999999999


Q ss_pred             HHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHH
Q 014817          305 ATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDR  383 (418)
Q Consensus       305 ~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~  383 (418)
                      ++|.+|+. .++.+..+.+ .|+++.|++++.++++.+++.|+++|.+|+.++++.+..+.+.|+++.|+.+++++ ++.
T Consensus       160 ~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~  237 (252)
T 4db8_A          160 WALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHE-NEK  237 (252)
T ss_dssp             HHHHHHTTSCHHHHHHHHH-TTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHTTTTCS-SSH
T ss_pred             HHHHHHHcCChHHHHHHHH-CCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHHHhCCC-CHH
Confidence            99999997 4566777777 59999999999999999999999999999988899999999999999999999877 999


Q ss_pred             HHHHHHHHHHHHHhh
Q 014817          384 AKRKAQLLLKLLRDS  398 (418)
Q Consensus       384 ~~~~A~~~L~~l~~~  398 (418)
                      +|+.|+++|.+|+.+
T Consensus       238 v~~~A~~~L~~l~~~  252 (252)
T 4db8_A          238 IQKEAQEALEKLQSH  252 (252)
T ss_dssp             HHHTHHHHHHTTC--
T ss_pred             HHHHHHHHHHHHhcC
Confidence            999999999998753

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.95  E-value=9.1e-27  Score=213.35  Aligned_cols=237  Identities=16%  Similarity=0.146  Sum_probs=212.5

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      ...+.+++.|++++.+  .+..|++.|+++...++.++..+++.|+++.|+++|.+.       +++++..|+++|.+++
T Consensus        12 ~~~~~~~~~L~s~~~~--~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l~   82 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQ--EQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSP-------NEQILQEALWALSNIA   82 (252)
T ss_dssp             CSHHHHHHHHHSSCSS--HHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCS-------CHHHHHHHHHHHHHHT
T ss_pred             chHHHHHHHHcCCCHH--HHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence            3478899999998655  458999999887776788899999999999999999887       5899999999999999


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhh-hHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELR-AQISNLDEIFEGVIDILKNLSSYPRGLK  260 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  260 (418)
                      .+.++++..+.+.|+++.|+.+|++++++++..|+++|.+|   +.+++.+ ..+.. .|+++.|+.+|+++  ++.++.
T Consensus        83 ~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l---~~~~~~~~~~~~~-~~~i~~L~~lL~~~--~~~v~~  156 (252)
T 4db8_A           83 SGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI---ASGGNEQIQAVID-AGALPALVQLLSSP--NEQILQ  156 (252)
T ss_dssp             TSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHH---TTSCHHHHHHHHH-TTHHHHHHHGGGCS--CHHHHH
T ss_pred             cCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHh---hcCCchHHHHHHH-CCCHHHHHHHHhCC--CHHHHH
Confidence            87668999999999999999999999999999999999999   7777777 66654 79999999999988  899999


Q ss_pred             HHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHHHhccCChHHHHHHHhcCC
Q 014817          261 VGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEFAEHALTVPLLVKTILKIS  338 (418)
Q Consensus       261 ~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~~g~i~~Lv~~l~~~~  338 (418)
                      .|+++|.+|+... +++..+++.|+++.|+++|.+++..+++.++++|.+|+ .+++.+..+.+ .|+++.|++++.+++
T Consensus       157 ~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~  235 (252)
T 4db8_A          157 EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHEN  235 (252)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHTTTTCSS
T ss_pred             HHHHHHHHHHcCChHHHHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCcHHHHHHHhCCCC
Confidence            9999999999754 57778889999999999999989999999999999999 46777888887 599999999999999


Q ss_pred             hHHHHHHHHHHHHHhc
Q 014817          339 DRATEYAAGALAALCS  354 (418)
Q Consensus       339 ~~~~~~A~~~L~~l~~  354 (418)
                      +.+++.|+++|.+|+.
T Consensus       236 ~~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          236 EKIQKEAQEALEKLQS  251 (252)
T ss_dssp             SHHHHTHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            9999999999999875

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.95  E-value=2.6e-26  Score=209.68  Aligned_cols=238  Identities=19%  Similarity=0.167  Sum_probs=216.2

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      .++.|++.|++++  ...+..|++.|.+++..++.++..+++.|+++.|+++|.++       +.+++..|+++|.+++.
T Consensus         3 ~i~~L~~~L~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-------~~~v~~~a~~~L~~l~~   73 (252)
T 4hxt_A            3 DVEKLVKLLTSTD--SETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTST-------DSEVQKEAARALANIAS   73 (252)
T ss_dssp             HHHHHHHHTTCSC--HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHTT
T ss_pred             cHHHHHHHHcCCC--HHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCC-------CHHHHHHHHHHHHHHHc
Confidence            5889999999875  34568999999999999888999999999999999999887       58999999999999999


Q ss_pred             ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817          183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG  262 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a  262 (418)
                      +.++++..+.+.|+++.|+.+|++++++++..++++|.+|+  ..+++++..+.. .|+++.|+++++++  ++.++..|
T Consensus        74 ~~~~~~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~--~~~~~~~~~~~~-~~~i~~L~~~l~~~--~~~~~~~a  148 (252)
T 4hxt_A           74 GPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA--SGPDEAIKAIVD-AGGVEVLVKLLTST--DSEVQKEA  148 (252)
T ss_dssp             SCHHHHHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHT--TSCHHHHHHHHH-TTHHHHHHHHTTCS--CHHHHHHH
T ss_pred             CChHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH--cCCHHHHHHHHH-CCCHHHHHHHHcCC--CHHHHHHH
Confidence            86689999999999999999999999999999999999993  267788888866 79999999999988  89999999


Q ss_pred             HHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChH
Q 014817          263 IKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDR  340 (418)
Q Consensus       263 ~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~  340 (418)
                      +++|.+|+... +++..+++.|+++.|+.+|.+++..++..++++|.+|+. +++.+..+.+ .|+++.|++++.++++.
T Consensus       149 ~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~l~~-~~~i~~L~~ll~~~~~~  227 (252)
T 4hxt_A          149 ARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSAIKAIVD-AGGVEVLQKLLTSTDSE  227 (252)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHHHHHHHH-TTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHCCCcHH
Confidence            99999999865 466888999999999999999899999999999999997 6677778887 59999999999999999


Q ss_pred             HHHHHHHHHHHHhcC
Q 014817          341 ATEYAAGALAALCSA  355 (418)
Q Consensus       341 ~~~~A~~~L~~l~~~  355 (418)
                      +++.|+++|.+|+..
T Consensus       228 v~~~a~~~L~~l~~~  242 (252)
T 4hxt_A          228 VQKEAQRALENIKSG  242 (252)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcC
Confidence            999999999999973

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.95  E-value=6.7e-26  Score=230.29  Aligned_cols=282  Identities=11%  Similarity=0.092  Sum_probs=248.2

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +.++.|++.|.+++ +...+..|++.|.+++..++.++..+++.|+++.|+.+|.++       ++++++.|+++|.+++
T Consensus       130 g~i~~Lv~~L~~~~-~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~-------~~~vr~~A~~aL~~l~  201 (530)
T 1wa5_B          130 GVVPRLVEFMRENQ-PEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-------SVEVKEQAIWALGNVA  201 (530)
T ss_dssp             TCHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-------CHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhCCCC-CHHHHHHHHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence            45788999998762 223468899999999998888999999999999999999876       6899999999999999


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch-hhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ-ELRAQISNLDEIFEGVIDILKNLSSYPRGLK  260 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  260 (418)
                      .+.++++..+...|+++.|+.+|.+.+.+++..++++|.+|   +... ........ .|+++.|+.+|.+.  ++.++.
T Consensus       202 ~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L---~~~~~~~~~~~~~-~~~l~~L~~lL~~~--d~~v~~  275 (530)
T 1wa5_B          202 GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL---CRGKKPQPDWSVV-SQALPTLAKLIYSM--DTETLV  275 (530)
T ss_dssp             TTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH---HCCSSSCCCHHHH-GGGHHHHHHHTTCC--CHHHHH
T ss_pred             CCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHH---hCCCCCCCcHHHH-HhHHHHHHHHHcCC--CHHHHH
Confidence            87667899999999999999999999999999999999999   4443 33333333 68999999999988  899999


Q ss_pred             HHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhcCC
Q 014817          261 VGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILKIS  338 (418)
Q Consensus       261 ~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~~  338 (418)
                      .|+++|.+|+... +....+++.|+++.|+.+|.+.+..++..++.+|.+|+.. +...+.+.. .|+++.|+.+|.+++
T Consensus       276 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~lL~~~~  354 (530)
T 1wa5_B          276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPK  354 (530)
T ss_dssp             HHHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSC
T ss_pred             HHHHHHHHHhCCCHHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHH-cchHHHHHHHHcCCC
Confidence            9999999999764 5677788899999999999988889999999999999954 566677777 499999999999999


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ..+++.|+++|.+|+.++++..+.+++.|+++.|+.+|.++ ++.+++.|+++|.++....
T Consensus       355 ~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~~~  414 (530)
T 1wa5_B          355 ENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGG  414 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcC
Confidence            99999999999999998888888889999999999999877 9999999999999998863

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.95  E-value=7.9e-26  Score=229.74  Aligned_cols=282  Identities=18%  Similarity=0.178  Sum_probs=248.0

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhc-ChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARD-SDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF  180 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~-~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l  180 (418)
                      ..++.+++.|++++  ...+..|+..|++++.. +..++..+++.|++|.|+.+|.+++      ++.++..|+++|.++
T Consensus        87 ~~i~~lv~~L~s~~--~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~------~~~v~~~A~~~L~~l  158 (530)
T 1wa5_B           87 QELPQMTQQLNSDD--MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ------PEMLQLEAAWALTNI  158 (530)
T ss_dssp             CCHHHHHHHHSCSS--HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCC--HHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCC------CHHHHHHHHHHHHHH
Confidence            34889999998874  34568999999999764 3455677888999999999998763      588999999999999


Q ss_pred             CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817          181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK  260 (418)
Q Consensus       181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  260 (418)
                      +.+..+.+..+++.|+++.|+.+|++++++++..|+++|.+|+  ...++++..+.. .|+++.|+.++.+.  ++.++.
T Consensus       159 ~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~--~~~~~~~~~~~~-~~~l~~L~~ll~~~--~~~v~~  233 (530)
T 1wa5_B          159 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA--GDSTDYRDYVLQ-CNAMEPILGLFNSN--KPSLIR  233 (530)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTCHHHHHHGGGSC--CHHHHH
T ss_pred             hCCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHh--CCCccchHHHHH-cCcHHHHHHHhccC--CHHHHH
Confidence            9877678888989999999999999999999999999999994  344677777765 68999999999986  899999


Q ss_pred             HHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhcCC
Q 014817          261 VGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILKIS  338 (418)
Q Consensus       261 ~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~~  338 (418)
                      .|+++|.+|+.+. .+.......|+++.|+.+|.+++..++..++++|.+|+.. ++.+..+.. .|+++.|+.+|.+.+
T Consensus       234 ~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~v~~Lv~lL~~~~  312 (530)
T 1wa5_B          234 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHES  312 (530)
T ss_dssp             HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHHHHHHHh-cCcHHHHHHHHCCCC
Confidence            9999999999876 5666667799999999999998899999999999999965 566777777 499999999999999


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      ..++..|+++|.+|+.+++...+.+.+.|+++.|+.+|+++ +..+++.|+++|.+++..
T Consensus       313 ~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~~  371 (530)
T 1wa5_B          313 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAG  371 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS
T ss_pred             hhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence            99999999999999998888888899999999999999877 899999999999999864

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.95  E-value=1.9e-25  Score=221.64  Aligned_cols=280  Identities=12%  Similarity=0.101  Sum_probs=245.5

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +.++.|++.|++++. ...+..|++.|.+++..++.+...+++.|+++.|+++|.++       ++++++.|+++|.+++
T Consensus        64 ~~i~~L~~~L~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~-------~~~vr~~a~~~L~~l~  135 (450)
T 2jdq_A           64 GVVARFVEFLKRKEN-CTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE-------FEDVQEQAVWALGNIA  135 (450)
T ss_dssp             THHHHHHHHHTCTTC-HHHHHHHHHHHHHHHSSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHCCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHhCCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHc
Confidence            568899999987632 23468999999999998888888889999999999999876       5899999999999999


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccc--hhhhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817          182 LTETECMEIASDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRS--QELRAQISNLDEIFEGVIDILKNLSSYPRG  258 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  258 (418)
                      .+..+.+..+.+.|+++.|+.+|++ .+.+++..++++|.+|   +..  +..+..+.  .|+++.|+.++.++  ++.+
T Consensus       136 ~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l---~~~~~~~~~~~~~--~~~l~~L~~~l~~~--~~~v  208 (450)
T 2jdq_A          136 GDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNL---CRGKSPPPEFAKV--SPCLNVLSWLLFVS--DTDV  208 (450)
T ss_dssp             TTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHH---HCCSSSCCCGGGT--GGGHHHHHHHTTCC--CHHH
T ss_pred             cCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHH---hCCCCCCCCHHHH--HHHHHHHHHHHccC--CHHH
Confidence            8876789999999999999999996 6899999999999999   433  23333332  68999999999988  8999


Q ss_pred             hHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH-hHHHHHHhccCChHHHHHHHhc
Q 014817          259 LKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP-AGCAEFAEHALTVPLLVKTILK  336 (418)
Q Consensus       259 ~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~~  336 (418)
                      +..++++|.+|+... +++..+++.|+++.|+.+|.+.+..++..++++|.+|+... ..++.+.+ .|+++.|++++.+
T Consensus       209 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~  287 (450)
T 2jdq_A          209 LADACWALSYLSDGPNDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILN-CSALQSLLHLLSS  287 (450)
T ss_dssp             HHHHHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHT-TTHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHH-CccHHHHHHHHcC
Confidence            999999999999864 57778889999999999999888999999999999999754 45555666 5999999999999


Q ss_pred             CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       337 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +++.++..|+++|.+|+.++++..+.+.+.|+++.|+.+|.++ ++.+|+.|+++|.++...
T Consensus       288 ~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          288 PKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATSG  348 (450)
T ss_dssp             SSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHcC
Confidence            9999999999999999998888888899999999999999887 999999999999999875

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.94  E-value=1.6e-25  Score=226.92  Aligned_cols=282  Identities=15%  Similarity=0.131  Sum_probs=246.2

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF  180 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l  180 (418)
                      .+.++.|++.|.+++ +...+..|+..|++++.. +.++..+.+.|+++.|+++|.++       +++++..|+++|.++
T Consensus        58 ~~~i~~Lv~~L~~~~-~~~~~~~a~~~L~~ls~~-~~~~~~i~~~g~i~~L~~lL~~~-------~~~v~~~a~~~L~~l  128 (529)
T 1jdh_A           58 PQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSP-------VDSVLFYAITTLHNL  128 (529)
T ss_dssp             HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTS-HHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHhcCC-CHHHHHHHHHHHHHHHcC-chhHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHH
Confidence            356889999997653 233468899999999875 56999999999999999999887       588999999999999


Q ss_pred             CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817          181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK  260 (418)
Q Consensus       181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  260 (418)
                      +.+.++.+..+.+.|+++.|+++|++++.+++..++.+|.+++  ..+++++..+.. .|+++.|+++++++. ....+.
T Consensus       129 ~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la--~~~~~~~~~i~~-~~~i~~L~~ll~~~~-~~~~~~  204 (529)
T 1jdh_A          129 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQESKLIILA-SGGPQALVNIMRTYT-YEKLLW  204 (529)
T ss_dssp             HHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTHHHHHHHHHHHCC-CHHHHH
T ss_pred             hcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHH--hCCHHHHHHHHH-CCCHHHHHHHHHhCC-hHHHHH
Confidence            8765567888889999999999999999999999999999995  456888888876 689999999999884 566778


Q ss_pred             HHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChH
Q 014817          261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDR  340 (418)
Q Consensus       261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~  340 (418)
                      .++.+|++|+.+.+++..+++.|+++.|+.++.+++..++..++++|.+|+.......  .. .|+++.|++++.+.++.
T Consensus       205 ~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~~~~~~~~--~~-~~~i~~L~~ll~~~~~~  281 (529)
T 1jdh_A          205 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQE--GM-EGLLGTLVQLLGSDDIN  281 (529)
T ss_dssp             HHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTCS--CC-HHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHhcCChhhH--HH-HhHHHHHHHHHcCCCHH
Confidence            8999999999999999999999999999999998888999999999999997543321  12 37899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCC-CHHHHHHHHHHHHHHHhh
Q 014817          341 ATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDC-TDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       341 ~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~-~~~~~~~A~~~L~~l~~~  398 (418)
                      +++.|+++|.+|+.++++.+..+.+.|+++.|+.+|.+.. ++.+++.|..+|.+|...
T Consensus       282 v~~~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~  340 (529)
T 1jdh_A          282 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  340 (529)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcC
Confidence            9999999999999988889999999999999999997642 489999999999999765

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.94  E-value=1.1e-24  Score=215.98  Aligned_cols=281  Identities=16%  Similarity=0.103  Sum_probs=242.7

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +.++.|++.|++++.  ..+..|++.|.+++..++.++..+.+.|+++.|+.+|.++.      +.++++.|+++|.+++
T Consensus       107 ~~i~~L~~lL~~~~~--~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~------~~~v~~~a~~~L~~l~  178 (450)
T 2jdq_A          107 GAVPIFIELLSSEFE--DVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQN------RLTMTRNAVWALSNLC  178 (450)
T ss_dssp             THHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCC------CHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCCCH--HHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCC------CHHHHHHHHHHHHHHh
Confidence            468889999987643  45688999999999988899999999999999999998643      5899999999999998


Q ss_pred             CCh-hHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc-chhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817          182 LTE-TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR-SQELRAQISNLDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       182 ~~~-~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      .+. ...+..+. .++++.|+.+|.+++.+++..++++|.+|   +. .++.+..+.. .|+++.|+.+|.+.  ++.++
T Consensus       179 ~~~~~~~~~~~~-~~~l~~L~~~l~~~~~~v~~~a~~~L~~l---~~~~~~~~~~~~~-~~~i~~L~~ll~~~--~~~v~  251 (450)
T 2jdq_A          179 RGKSPPPEFAKV-SPCLNVLSWLLFVSDTDVLADACWALSYL---SDGPNDKIQAVID-AGVCRRLVELLMHN--DYKVV  251 (450)
T ss_dssp             CCSSSCCCGGGT-GGGHHHHHHHTTCCCHHHHHHHHHHHHHH---TSSSHHHHHHHHH-TTTHHHHHHHTTCS--CHHHH
T ss_pred             CCCCCCCCHHHH-HHHHHHHHHHHccCCHHHHHHHHHHHHHH---HCCCcHHHHHHHH-cCcHHHHHHHHCCC--chhHH
Confidence            654 23333333 78999999999999999999999999999   54 3455555644 68999999999987  89999


Q ss_pred             HHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcC
Q 014817          260 KVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKI  337 (418)
Q Consensus       260 ~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~  337 (418)
                      ..|+++|.+|+...+ .+..+++.|+++.|+.+|.+++..++..++++|.+|+. +++..+.+.+ .|+++.|++++.++
T Consensus       252 ~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~-~~~l~~L~~~l~~~  330 (450)
T 2jdq_A          252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVID-ANIFPALISILQTA  330 (450)
T ss_dssp             HHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHhhCChHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHhcC
Confidence            999999999998765 45567889999999999999888999999999999995 6777788887 49999999999999


Q ss_pred             ChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          338 SDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       338 ~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ++.++..|+++|.+++. ++++..+.+.+.|+++.|+.++... ++.+++.|.++|.++....
T Consensus       331 ~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~~  392 (450)
T 2jdq_A          331 EFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILRLG  392 (450)
T ss_dssp             CHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhc
Confidence            99999999999999998 4778888888999999999999877 9999999999999998754

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.94  E-value=4.2e-26  Score=204.48  Aligned_cols=198  Identities=13%  Similarity=0.069  Sum_probs=173.4

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGM  226 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s  226 (418)
                      .+|.|+++|.+++.     ..+++..|++.|.+|+..++++|..|.+.|+||+||++|+++++++++.|+++|+||+  .
T Consensus         9 ~i~~lV~lL~s~~~-----~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa--~   81 (233)
T 3tt9_A            9 TLERAVSMLEADHM-----LPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLV--F   81 (233)
T ss_dssp             CHHHHHHTCCSSCC-----CHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH--T
T ss_pred             cHHHHHHHhCCCCc-----hHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHH--h
Confidence            58999999988741     2388999999999999776689999999999999999999999999999999999994  4


Q ss_pred             cchhhhhHhhchhhhHHHHHHHhhc-CCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc---C--------
Q 014817          227 RSQELRAQISNLDEIFEGVIDILKN-LSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA---D--------  294 (418)
Q Consensus       227 ~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~---~--------  294 (418)
                      .+++++..|.. .|+|++|+++|.+ +  +.++++.|+.+|+||+..+++|..+++. ++++|++++.   +        
T Consensus        82 ~~~~nk~~I~~-~GaI~~Lv~lL~~~~--~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~  157 (233)
T 3tt9_A           82 EDNDNKLEVAE-LNGVPRLLQVLKQTR--DLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYP  157 (233)
T ss_dssp             TCHHHHHHHHH-TTHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCC
T ss_pred             CCHHHHHHHHH-cCCHHHHHHHHccCC--CHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccc
Confidence            57899999976 7999999999985 5  7899999999999999999999999875 7999998763   1        


Q ss_pred             -----CCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhc------CChHHHHHHHHHHHHHhcC
Q 014817          295 -----FDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILK------ISDRATEYAAGALAALCSA  355 (418)
Q Consensus       295 -----~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~------~~~~~~~~A~~~L~~l~~~  355 (418)
                           .+..++++|.++|++|+. ++++|+.+++..|+|+.||.+++.      .+...+|+|+.+|+||+.+
T Consensus       158 ~~~~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          158 KANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             cccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence                 134788999999999996 679999999876889999999986      2667899999999999973

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.93  E-value=3.8e-25  Score=229.90  Aligned_cols=282  Identities=15%  Similarity=0.127  Sum_probs=246.1

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF  180 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l  180 (418)
                      .+.++.|++.|.++. +...+..|+..|+.++.. +.++..+.+.|+++.|+++|.++       ++.++..|+.+|.++
T Consensus        55 ~~~i~~Lv~~L~~~~-~~~~~~~A~~~L~~Ls~~-~~~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~A~~aL~nL  125 (644)
T 2z6h_A           55 PQMVSAIVRTMQNTN-DVETARCTAGTLHNLSHH-REGLLAIFKSGGIPALVKMLGSP-------VDSVLFYAITTLHNL  125 (644)
T ss_dssp             HHHHHHHHHHHHSCC-CHHHHHHHHHHHHHHTTS-HHHHHHHHTTTHHHHHHHHTTCS-------SHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHHhcCC-CHHHHHHHHHHHHHHhcC-hhhHHHHHHcCCHHHHHHHHhCC-------CHHHHHHHHHHHHHH
Confidence            356889999998753 233468899999998875 56999999999999999999887       589999999999999


Q ss_pred             CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817          181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK  260 (418)
Q Consensus       181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  260 (418)
                      +...+..+..+.+.|+++.|+++|++++..++..++.+|.+|+  ..+++++..+.. .|+++.|+++|++.. ....+.
T Consensus       126 ~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La--~~~~~~~~~i~~-~g~v~~Lv~lL~~~~-~~~~~~  201 (644)
T 2z6h_A          126 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQESKLIILA-SGGPQALVNIMRTYT-YEKLLW  201 (644)
T ss_dssp             HHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTHHHHHHHHHTTCC-CHHHHH
T ss_pred             HhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHH--hcCcHHHHHHHH-cCChHHHHHHHHcCC-hHHHHH
Confidence            8765567888889999999999999999999999999999994  357888988876 689999999999874 567889


Q ss_pred             HHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChH
Q 014817          261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDR  340 (418)
Q Consensus       261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~  340 (418)
                      .++.+|++|+.+.+++..+++.|+++.|+.++.+++..++..++++|.+|+......  ... .++++.|++++.+.+..
T Consensus       202 ~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~~~~~~~--~~~-~~~i~~Lv~lL~~~d~~  278 (644)
T 2z6h_A          202 TTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLGSDDIN  278 (644)
T ss_dssp             HHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHGGGCTTC--CSC-HHHHHHHHHHTTCSCHH
T ss_pred             HHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcchhh--hhh-hhHHHHHHHHHcCCCHH
Confidence            999999999999999999999999999999999888899999999999999643221  112 37899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCC-HHHHHHHHHHHHHHHhh
Q 014817          341 ATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCT-DRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       341 ~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~~A~~~L~~l~~~  398 (418)
                      +++.|+++|.+|+.++++.++.+.+.|+++.|+.+|.+.++ +.++..|.++|++|+..
T Consensus       279 v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~~  337 (644)
T 2z6h_A          279 VVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  337 (644)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhcC
Confidence            99999999999999888899999999999999999987533 89999999999999754

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.92  E-value=8.7e-25  Score=195.96  Aligned_cols=197  Identities=14%  Similarity=0.104  Sum_probs=174.0

Q ss_pred             CchHHHHHHhcCCCH--HHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc-
Q 014817          195 DKITSLSSLLFHSSI--EVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL-  271 (418)
Q Consensus       195 g~i~~Lv~~L~~~~~--~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~-  271 (418)
                      -.++.||++|+++++  +++..|+++|.+|+  ..+++++..|.. .|+||+|+++|+++  ++++++.|+++|.||+. 
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~--~~~~~~r~~I~~-~G~Ip~LV~lL~s~--~~~vq~~Aa~aL~nLa~~   82 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHEC--FQKSEARKRVNQ-LRGILKLLQLLKVQ--NEDVQRAVCGALRNLVFE   82 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHH--HHCHHHHHHHHH-TTHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHH--cCCcHHHHHHHH-cCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHhC
Confidence            458999999999987  89999999999994  467888999976 79999999999998  89999999999999997 


Q ss_pred             ccccHHHHHHcCchHHHHHHhc-CCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc--------------
Q 014817          272 VKQTRYKAVAAGAAETLVDRLA-DFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK--------------  336 (418)
Q Consensus       272 ~~~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~--------------  336 (418)
                      +++|+..++++|+||+|+++|. +++.++++.++++|.+|+..+++|..+.+  ++++.|++++..              
T Consensus        83 ~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~  160 (233)
T 3tt9_A           83 DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKAN  160 (233)
T ss_dssp             CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred             CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCccccccccc
Confidence            5789999999999999999998 56889999999999999999999999987  469999986531              


Q ss_pred             --CChHHHHHHHHHHHHHhcCCHHHHHHHHhc-ChHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHhh
Q 014817          337 --ISDRATEYAAGALAALCSASERCQRDAVSA-GVLTQLLLLVQSD-----CTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       337 --~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~~-----~~~~~~~~A~~~L~~l~~~  398 (418)
                        .+..++++|..+|+||+..+++.|+.|.+. |+|+.|+.+++..     .+++.++.|..+|+||+-.
T Consensus       161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence              256899999999999999788999999986 7789999999752     3678999999999999753

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.92  E-value=2.9e-24  Score=217.57  Aligned_cols=279  Identities=14%  Similarity=0.046  Sum_probs=241.5

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +.++.|++.|+++++  ..+..|++.|.+++..++.++..+++.|++|.|+++|.++       +.+++..++.+|.+++
T Consensus       101 g~i~~L~~lL~~~~~--~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~ll~~~-------~~~~~~~~~~~L~~la  171 (529)
T 1jdh_A          101 GGIPALVKMLGSPVD--SVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKT-------NVKFLAITTDCLQILA  171 (529)
T ss_dssp             THHHHHHHHTTCSCH--HHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCC-------CHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCcchHHHHHHcCCHHHHHHHHhcC-------CHHHHHHHHHHHHHHH
Confidence            568899999988753  3468999999999998888899999999999999999876       5789999999999999


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCC-HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSS-IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK  260 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~-~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  260 (418)
                      .++++++..+.+.|+++.|+.+|++++ ...+..++.+|.+|   +.+++++..+.. .|+++.|+.++.++  ++.++.
T Consensus       172 ~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l---~~~~~~~~~~~~-~g~~~~L~~ll~~~--~~~~~~  245 (529)
T 1jdh_A          172 YGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVL---SVCSSNKPAIVE-AGGMQALGLHLTDP--SQRLVQ  245 (529)
T ss_dssp             TTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHH---TTSTTHHHHHHH-TTHHHHHHTTTTSS--CHHHHH
T ss_pred             hCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHH---hcCcccHHHHHH-CCCHHHHHHHHhCC--ChHHHH
Confidence            876689999999999999999998775 56677889999999   788888988865 78999999999988  899999


Q ss_pred             HHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhc--C
Q 014817          261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILK--I  337 (418)
Q Consensus       261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~--~  337 (418)
                      .++++|.+|+.......  ...|+++.|+++|.+.+..+++.++++|.+|+.. ++++..+.+. |+++.|++++.+  .
T Consensus       246 ~a~~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~-~~v~~L~~ll~~~~~  322 (529)
T 1jdh_A          246 NCLWTLRNLSDAATKQE--GMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQV-GGIEALVRTVLRAGD  322 (529)
T ss_dssp             HHHHHHHHHHTTCTTCS--CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHT-THHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcCChhhH--HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHc-CChHHHHHHHHccCC
Confidence            99999999997654321  2358899999999998999999999999999975 5788888884 999999999976  3


Q ss_pred             ChHHHHHHHHHHHHHhcCCH---HHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          338 SDRATEYAAGALAALCSASE---RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       338 ~~~~~~~A~~~L~~l~~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      ++.+++.|+++|.+|+.+++   ..+..+.+.|+++.|+.+|+++.++.+++.|+++|+++...
T Consensus       323 ~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~  386 (529)
T 1jdh_A          323 REDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC  386 (529)
T ss_dssp             CHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcC
Confidence            47899999999999998543   35778899999999999998774579999999999999864

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=1.3e-23  Score=186.93  Aligned_cols=199  Identities=16%  Similarity=0.166  Sum_probs=179.2

Q ss_pred             cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc-
Q 014817          193 DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL-  271 (418)
Q Consensus       193 ~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~-  271 (418)
                      ..|..+.|+.+|++++++++..|+++|.+++  ..+++++..+.. .|+++.|+.+|+++  ++.++..|+++|.||+. 
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~--~~~~~~~~~i~~-~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~   84 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIA--SGGNEQIQAVID-AGALPALVQLLSSP--NEQILQEALWALSNIASG   84 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHH--TSCHHHHHHHHH-TTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTS
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHH--cCCHHHHHHHHH-cCCHHHHHHHHcCC--CHHHHHHHHHHHHHHhcC
Confidence            4678999999999999999999999999994  367787878865 79999999999998  89999999999999995 


Q ss_pred             ccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 014817          272 VKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALA  350 (418)
Q Consensus       272 ~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~  350 (418)
                      +++++..+++.|+++.|+.+|.+++..+++.++++|.+|+. .++.+..+.+ .|+++.|++++.+++..+++.|+++|.
T Consensus        85 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~~~~v~~~a~~aL~  163 (210)
T 4db6_A           85 GNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSPNEQILQEALWALS  163 (210)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999995 5667777777 599999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          351 ALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       351 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +++..+++.+..+.+.|+++.|+.++.++ ++.+++.|.++|++|+.+
T Consensus       164 ~l~~~~~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~~  210 (210)
T 4db6_A          164 NIASGGNEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQSH  210 (210)
T ss_dssp             HHHTSCHHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC-
T ss_pred             HHHcCCcHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhcC
Confidence            99998789999999999999999999876 999999999999999753

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.92  E-value=8.9e-24  Score=223.65  Aligned_cols=281  Identities=15%  Similarity=0.120  Sum_probs=243.7

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +.++.|++.|+.+. +...+..|+..|.+++.. +.++..+.+.|+++.|+.+|.++       ++.++..|+++|.+|+
T Consensus       192 ~~i~~Lv~~L~~~~-d~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~g~I~~Lv~lL~~~-------~~~v~~~A~~aL~nLa  262 (780)
T 2z6g_A          192 QMVSAIVRTMQNTN-DVETARCTSGTLHNLSHH-REGLLAIFKSGGIPALVNMLGSP-------VDSVLFHAITTLHNLL  262 (780)
T ss_dssp             HHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHcCCC-CHHHHHHHHHHHHHHhCC-chhHHHHHHcCCHHHHHHHHcCC-------CHHHHHHHHHHHHHHh
Confidence            56788899997653 334578999999998765 67799999999999999999887       5889999999999998


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV  261 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  261 (418)
                      ...++.+..+.+.|+++.|+++|.+++..++..++.+|.+++  ..+++++..+.. .|+++.|+.+|+++. ....+..
T Consensus       263 ~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La--~~~~e~~~~i~~-~~~i~~Lv~lL~~~~-~~~~~~~  338 (780)
T 2z6g_A          263 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQESKLIILA-SGGPQALVNIMRTYT-YEKLLWT  338 (780)
T ss_dssp             HHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHH--TTCHHHHHHHHT-TTHHHHHHHHHTTCC-CHHHHHH
T ss_pred             CCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHh--cCChHHHHHHHH-cCCHHHHHHHHhcCC-HHHHHHH
Confidence            776577888889999999999999999999999999999995  457888888876 689999999999873 4566778


Q ss_pred             HHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817          262 GIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRA  341 (418)
Q Consensus       262 a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~  341 (418)
                      ++.+|++|+.+..++..+++.|+++.|+.+|.+.+..++..++++|.+|+......  ... .++++.|++++.+.+..+
T Consensus       339 a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~~-~~~i~~Lv~lL~~~d~~v  415 (780)
T 2z6g_A          339 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLGSDDINV  415 (780)
T ss_dssp             HHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHHHHHHHHTTCTTC--SCC-HHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHHHHHHHhccchhh--hhh-hhHHHHHHHHHcCCCHHH
Confidence            99999999999999999999999999999999888889999999999999654321  112 368999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCC-HHHHHHHHHHHHHHHhh
Q 014817          342 TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCT-DRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       342 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~-~~~~~~A~~~L~~l~~~  398 (418)
                      ++.|+++|.+|+.++++.+..+.+.|+++.|+.+|.+.++ +.+++.|+++|.+|+..
T Consensus       416 r~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~  473 (780)
T 2z6g_A          416 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSR  473 (780)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence            9999999999999888899999999999999999976423 58999999999999754

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.92  E-value=1.1e-23  Score=219.00  Aligned_cols=279  Identities=14%  Similarity=0.110  Sum_probs=239.6

Q ss_pred             ChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhh-cChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817          100 EPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISS-HNVRAILSQVFFTNINVKTASSPELAHESLALLV  178 (418)
Q Consensus       100 ~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~  178 (418)
                      +.+.++.|+..|++.+  ...+..|+..|.+++... .++..+.. .|+++.|+++|.+..      +++++..|+.+|.
T Consensus        12 ~~g~i~~Lv~lL~~~~--~~vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~~~------~~~~~~~A~~~L~   82 (644)
T 2z6h_A           12 ATRAIPELTKLLNDED--QVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTN------DVETARCTAGTLH   82 (644)
T ss_dssp             CTTTHHHHHHHHTCSC--HHHHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHSCC------CHHHHHHHHHHHH
T ss_pred             hhchHHHHHHHHcCCC--HHHHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhcCC------CHHHHHHHHHHHH
Confidence            4456899999998664  345789999999999765 46666665 489999999998653      5889999999999


Q ss_pred             cCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817          179 MFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRG  258 (418)
Q Consensus       179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  258 (418)
                      +|+.+. +++..+.+.|+++.|+++|+++++.++..|+++|.+|+  ...+..+..+.. .|+++.|+.+|+++  ++.+
T Consensus        83 ~Ls~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~--~~~~~~~~~v~~-~g~i~~Lv~lL~~~--~~~~  156 (644)
T 2z6h_A           83 NLSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRL-AGGLQKMVALLNKT--NVKF  156 (644)
T ss_dssp             HHTTSH-HHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHH--HHSTTHHHHHHH-TTHHHHHHHGGGCC--CHHH
T ss_pred             HHhcCh-hhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHH--hCcchhHHHHHH-CCChHHHHHHHCcC--CHHH
Confidence            999887 68999999999999999999999999999999999995  334566666654 79999999999998  7888


Q ss_pred             hHHHHHHHHHHcc-ccccHHHHHHcCchHHHHHHhcCCC-cccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc
Q 014817          259 LKVGIKALFALCL-VKQTRYKAVAAGAAETLVDRLADFD-KCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK  336 (418)
Q Consensus       259 ~~~a~~aL~~L~~-~~~n~~~i~~~G~v~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~  336 (418)
                      +..++.+|.+|+. +++++..+++.|+++.|+++|.+.+ ..++..++.+|.+|+.+++++..+++. |+++.|++++..
T Consensus       157 ~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~-g~l~~L~~ll~~  235 (644)
T 2z6h_A          157 LAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLTD  235 (644)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHT-THHHHHHTTTTC
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHC-CCHHHHHHHHhc
Confidence            8999999999996 6789999999999999999998764 456788999999999999999999995 999999999999


Q ss_pred             CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       337 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      .+..+++.++++|.+|+...+..   ....|+++.|+.+|.+. ++.+++.|+++|.+|+..
T Consensus       236 ~~~~~~~~a~~~L~nL~~~~~~~---~~~~~~i~~Lv~lL~~~-d~~v~~~a~~aL~~L~~~  293 (644)
T 2z6h_A          236 PSQRLVQNCLWTLRNLSDAATKQ---EGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCN  293 (644)
T ss_dssp             SCHHHHHHHHHHHHHHGGGCTTC---CSCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHHhhcchhh---hhhhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence            99999999999999999843221   12247899999999877 999999999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=3.5e-23  Score=184.12  Aligned_cols=198  Identities=15%  Similarity=0.093  Sum_probs=178.0

Q ss_pred             hcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 014817          144 SHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVL  223 (418)
Q Consensus       144 ~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~  223 (418)
                      ..|+.+.|+.+|.++       +++++..|+++|.+++..+++.+..+.+.|+++.|+++|++++++++..|+++|.+++
T Consensus        10 ~~~~~~~l~~LL~s~-------~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~   82 (210)
T 4db6_A           10 HGSELPQMVQQLNSP-------DQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIA   82 (210)
T ss_dssp             ---CHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred             ccchhHHHHHHhcCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            367899999999887       5899999999999999776688999999999999999999999999999999999993


Q ss_pred             hcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHH
Q 014817          224 AGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAER  302 (418)
Q Consensus       224 ~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~  302 (418)
                        ..+++++..+.. .|+++.|+.+|+++  ++.++..|+++|.||+... +++..+++.|+++.|+++|.+++..++..
T Consensus        83 --~~~~~~~~~i~~-~g~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~  157 (210)
T 4db6_A           83 --SGGNEQIQAVID-AGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQE  157 (210)
T ss_dssp             --TSCHHHHHHHHH-TTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHH
T ss_pred             --cCCcHHHHHHHH-CCCHHHHHHHHcCC--cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHH
Confidence              367788888865 79999999999998  8999999999999999654 56678889999999999999989999999


Q ss_pred             HHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          303 ALATVELLCRI-PAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       303 a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      ++++|.+|+.. ++.+..+.+ .|+++.|++++.+++..+++.|+++|.+|+.
T Consensus       158 a~~aL~~l~~~~~~~~~~~~~-~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          158 ALWALSNIASGGNEQKQAVKE-AGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHcCCcHHHHHHHH-CCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            99999999977 788888888 4999999999999999999999999999985

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.90  E-value=7e-23  Score=209.50  Aligned_cols=251  Identities=11%  Similarity=0.099  Sum_probs=209.4

Q ss_pred             hhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHH---HHHH
Q 014817          138 NRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIE---VRVN  214 (418)
Q Consensus       138 ~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~---~~~~  214 (418)
                      ++..+.+.|++|.|+.++++.       ++.+++.|+++|.+|+.+. ++|..+++.|++++|+.+|.+++..   .+..
T Consensus       449 ~~~~l~eaGvIp~Lv~Ll~S~-------s~~~re~A~~aL~nLS~d~-~~R~~lvqqGal~~LL~lL~s~~~~~~~~k~~  520 (778)
T 3opb_A          449 NEKYILRTELISFLKREMHNL-------SPNCKQQVVRIIYNITRSK-NFIPQLAQQGAVKIILEYLANKQDIGEPIRIL  520 (778)
T ss_dssp             HHHHTTTTTHHHHHHHHGGGS-------CHHHHHHHHHHHHHHHTSG-GGHHHHHHTTHHHHHHHHTTCC---CCHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHcCC-------CHHHHHHHHHHHHHHcCCH-HHHHHHHHCCCHHHHHHHHhcCCCcchHHHHH
Confidence            677889999999999999887       5899999999999999776 8999999999999999999998655   8999


Q ss_pred             HHHHHHHHHhcccchhhhhHhhc--hhhhHHHHHHHhhcCCCCh------------hhhHHHHHHHHHHccccc-----c
Q 014817          215 SAALIEIVLAGMRSQELRAQISN--LDEIFEGVIDILKNLSSYP------------RGLKVGIKALFALCLVKQ-----T  275 (418)
Q Consensus       215 a~~~L~~L~~~s~~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~------------~~~~~a~~aL~~L~~~~~-----n  275 (418)
                      |+.+|.++   ....+....+..  ..|+|++|+.+|..+....            ..+..|+.||.||+..++     .
T Consensus       521 AA~ALArL---lis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~  597 (778)
T 3opb_A          521 GCRALTRM---LIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEV  597 (778)
T ss_dssp             HHHHHHHH---HHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHH
T ss_pred             HHHHHHHH---HhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHH
Confidence            99999999   444444444432  1489999999998321011            237799999999998863     4


Q ss_pred             HHHHHHc-CchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHH-HHHHhcc-----CChHHHHHHHhcCChHHHHHHHHH
Q 014817          276 RYKAVAA-GAAETLVDRLADFDKCDAERALATVELLCRIPAGC-AEFAEHA-----LTVPLLVKTILKISDRATEYAAGA  348 (418)
Q Consensus       276 ~~~i~~~-G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~-----g~i~~Lv~~l~~~~~~~~~~A~~~  348 (418)
                      +..+++. |+++.|..+|.+++..++..|+.+|.||+.+++++ +++.+..     +.++.||.++..++...++.|+++
T Consensus       598 r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagA  677 (778)
T 3opb_A          598 CKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAI  677 (778)
T ss_dssp             HHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHH
Confidence            7888985 99999999999988899999999999999999886 4564321     237899999988999999999999


Q ss_pred             HHHHhcCCHHHHHHHHhc-ChHHHHHHHHhh--CCCHHHHHHHHHHHHHHHhhCC
Q 014817          349 LAALCSASERCQRDAVSA-GVLTQLLLLVQS--DCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       349 L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~--~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      |.+++.+++...+.+.+. ++++.++.+++.  + ++.++..++.++.||..+..
T Consensus       678 LAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~-~~~l~~R~~~~l~NL~~~~~  731 (778)
T 3opb_A          678 FANIATTIPLIAKELLTKKELIENAIQVFADQID-DIELRQRLLMLFFGLFEVIP  731 (778)
T ss_dssp             HHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHhcCCChHHHHHHHHccccHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHhhc
Confidence            999987688887878886 899999999987  5 99999999999999998643

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.90  E-value=1.7e-22  Score=213.85  Aligned_cols=271  Identities=11%  Similarity=0.091  Sum_probs=221.8

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      .++.+++.|.+++..  .+..++..++..      ++..+. .|++|.|+.+|.+.       ++.+++.|+.+|.+|+.
T Consensus       116 ~i~~lv~~L~~~~~~--~r~~a~~~l~~~------~~~~i~-~g~ip~Lv~lL~~~-------d~~vr~~A~~~L~~L~~  179 (780)
T 2z6g_A          116 AHPTNVQRLAEPSQM--LKHAVVNLINYQ------DDAELA-TRAIPELTKLLNDE-------DQVVVNKAAVMVHQLSK  179 (780)
T ss_dssp             ----------CCSCH--HHHHHHHHHHHH------HHHHHH-HHHHHHHHHHHHCS-------CHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHhcCccHH--HHHHHHHHHHhh------hHHHHH-hCCHHHHHHHHCCC-------CHHHHHHHHHHHHHHhC
Confidence            578999999987543  345566666533      333444 89999999999865       68999999999999998


Q ss_pred             ChhHHHhhccc-CCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817          183 TETECMEIASD-ADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK  260 (418)
Q Consensus       183 ~~~~~~~~i~~-~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  260 (418)
                      +. .++..+.. .|+++.|+++|+++ +.+++..|+.+|.+|   +..++++..++. .|+|+.|+.+|+++  ++.++.
T Consensus       180 ~~-~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~L---s~~~~~~~~i~~-~g~I~~Lv~lL~~~--~~~v~~  252 (780)
T 2z6g_A          180 KE-ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNL---SHHREGLLAIFK-SGGIPALVNMLGSP--VDSVLF  252 (780)
T ss_dssp             SH-HHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---HTSHHHHHHHHH-TTHHHHHHHHTTCS--CHHHHH
T ss_pred             CC-hhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHH---hCCchhHHHHHH-cCCHHHHHHHHcCC--CHHHHH
Confidence            77 56666664 58999999999866 899999999999999   777888888876 69999999999998  899999


Q ss_pred             HHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCC
Q 014817          261 VGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKIS  338 (418)
Q Consensus       261 ~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~  338 (418)
                      .|+++|.||+... +.+..+.+.|+++.|+.+|.+++..+++.++.+|.+|+. +++++..+... |+++.|++++++.+
T Consensus       253 ~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~-~~i~~Lv~lL~~~~  331 (780)
T 2z6g_A          253 HAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILAS-GGPQALVNIMRTYT  331 (780)
T ss_dssp             HHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTT-THHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHc-CCHHHHHHHHhcCC
Confidence            9999999999875 556666789999999999998888888999999999995 68899999885 99999999998754


Q ss_pred             -hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          339 -DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       339 -~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                       ...++.++.+|++|+. .+..+..+++.|+++.|+.++.+. +...++.|+++|.+|+...
T Consensus       332 ~~~~~~~a~~aL~~Ls~-~~~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a~~~L~~L~~~~  391 (780)
T 2z6g_A          332 YEKLLWTTSRVLKVLSV-CSSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSDAA  391 (780)
T ss_dssp             CHHHHHHHHHHHHHHHT-STTHHHHHHHTTHHHHHGGGTTCS-CHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHhhc-ChHHHHHHHHhchHHHHHHHHcCC-chHHHHHHHHHHHHHhccc
Confidence             4566789999999997 667788899999999999999776 8899999999999999764

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.89  E-value=1.7e-21  Score=181.95  Aligned_cols=225  Identities=14%  Similarity=0.057  Sum_probs=183.1

Q ss_pred             hhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHH-HhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817          167 PELAHESLALLVMFPLTETECMEIASDADKITSLSS-LLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV  245 (418)
Q Consensus       167 ~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L  245 (418)
                      .+-+..|+..|.++..+. ++...+.+.|+++.|+. +|++++++++..|+++|.+++  ..++..+..+.. .|++++|
T Consensus        54 ~e~k~~Al~~L~~lv~~~-dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia--~~n~~~~~~vv~-~g~l~~L  129 (296)
T 1xqr_A           54 QQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCS--QNVAAIQEQVLG-LGALRKL  129 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCh-hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHH--hCCHHHHHHHHH-CCCHHHH
Confidence            456788999999998776 68888899999999999 999999999999999999995  456677777765 7999999


Q ss_pred             HHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhc
Q 014817          246 IDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEH  323 (418)
Q Consensus       246 v~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~  323 (418)
                      +.+|++.. +..+++.|+++|.||+.+. .....++++|+++.|+.+|.+++..++..|+++|.+|+. +++.++.+++ 
T Consensus       130 l~LL~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~~~~vv~-  207 (296)
T 1xqr_A          130 LRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS-  207 (296)
T ss_dssp             HHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH-
T ss_pred             HHHHccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHHHHHHHH-
Confidence            99999653 6889999999999999765 466788899999999999999999999999999999985 4678888888 


Q ss_pred             cCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhc--ChHHHH---HHHHhhC-CCHHHHHHHHHHHHHHHh
Q 014817          324 ALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSA--GVLTQL---LLLVQSD-CTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       324 ~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~--g~i~~L---~~ll~~~-~~~~~~~~A~~~L~~l~~  397 (418)
                      .|+++.|+.+|.+.+..+++.|+.+|.+|+.+.+.........  .....|   .+-++.. .+....++|..++..+-.
T Consensus       208 ~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          208 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             cCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHcC
Confidence            5999999999999999999999999999999766555443322  122222   3334322 135666777777766653

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=2.9e-21  Score=180.27  Aligned_cols=199  Identities=15%  Similarity=0.053  Sum_probs=172.3

Q ss_pred             HHHHHHHHHhhcCC----------CchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHH-HhhcccccccCCChhHH
Q 014817          102 SLVRTLLNQASSES----------NTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQ-VFFTNINVKTASSPELA  170 (418)
Q Consensus       102 ~~i~~lv~~L~~~~----------~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~~~~v~  170 (418)
                      ..++..+..|.++.          .+.+.+..|+..|..++.+ ..++..|++.|++|.|+. +|.++       +++++
T Consensus        28 ~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~-~dna~~~~~~G~l~~Lv~~lL~s~-------~~~vr   99 (296)
T 1xqr_A           28 EQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCEN-MDNAADFCQLSGMHLLVGRYLEAG-------AAGLR   99 (296)
T ss_dssp             HHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHTTTTCS-------SHHHH
T ss_pred             HHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhC-hhhHHHHHHcCCHHHHHHHHHcCC-------CHHHH
Confidence            45677777777652          1234578899999999864 568888999999999999 99877       68999


Q ss_pred             HHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHh
Q 014817          171 HESLALLVMFPLTETECMEIASDADKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDIL  249 (418)
Q Consensus       171 ~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL  249 (418)
                      +.|+++|++++.+++.++..+++.|++++|+.+|+++ +..++..|+|+|.+++  ..++.....+.. .|+++.|+.+|
T Consensus       100 ~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~--~~~~~~~~~~~~-~ggi~~L~~lL  176 (296)
T 1xqr_A          100 WRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLV--REQEAGLLQFLR-LDGFSVLMRAM  176 (296)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHH--cCCcHHHHHHHH-CCCHHHHHHHH
Confidence            9999999999988878899999999999999999864 7999999999999994  345555666655 68999999999


Q ss_pred             hcCCCChhhhHHHHHHHHHHccc-cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC
Q 014817          250 KNLSSYPRGLKVGIKALFALCLV-KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI  313 (418)
Q Consensus       250 ~~~~~~~~~~~~a~~aL~~L~~~-~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  313 (418)
                      +++  +..++..|+++|.+|+.. .+.+..+++.|+++.|+.+|.+++..+++.++.+|.+|+..
T Consensus       177 ~~~--d~~v~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~  239 (296)
T 1xqr_A          177 QQQ--VQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTD  239 (296)
T ss_dssp             HSS--CHHHHHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTT
T ss_pred             cCC--CHHHHHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhC
Confidence            998  899999999999999875 56889999999999999999999999999999999999976

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.87  E-value=7.2e-21  Score=194.69  Aligned_cols=327  Identities=12%  Similarity=0.080  Sum_probs=242.6

Q ss_pred             CCCCcccHHHHHH----HHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhccCCCcccCCCCCCCCC-hHHHHHHH
Q 014817           34 CTGQTYDRPSIES----WVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAE-PSLVRTLL  108 (418)
Q Consensus        34 ~~g~~~~r~~i~~----~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~~~~~~~~~~p~~~~~-~~~i~~lv  108 (418)
                      .|.+.-||..|.+    |+...-.           .+-..++++--++.-|.....          .. .+ ...++.+.
T Consensus       283 ACi~~~cR~~I~~~~~~~L~~~l~-----------~~~ir~lAavvL~KL~~~~~~----------~~-~si~~La~~~~  340 (778)
T 3opb_A          283 ACIDETMRTYITENYLQLLERSLN-----------VEDVQIYSALVLVKTWSFTKL----------TC-INLKQLSEIFI  340 (778)
T ss_dssp             HCCSHHHHHHHHHHHHHHHHHHTT-----------SGGGHHHHHHHHHHHTGGGTC----------TT-CCHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHhHHHHHHHHhc-----------cHHHHHHHHHHHHHHhcCCCC----------Cc-CcHHHHHHHHH
Confidence            5888888888876    5553211           112333444444454543211          11 11 22345566


Q ss_pred             HHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhh-cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh--
Q 014817          109 NQASSESNTYGSRLSALRRLRGLARDSDKNRSLISS-HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET--  185 (418)
Q Consensus       109 ~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~-~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~--  185 (418)
                      +.|..+.  ...+..|+..|..++.+ +..|+.+++ .|+++.|+++++...      +..+...++.+|.||+...+  
T Consensus       341 ~~L~~~~--~~~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~------d~s~~Ygal~IL~NLt~~~~~~  411 (778)
T 3opb_A          341 NAISRRI--VPKVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQK------MTHCLYGLLVIMANLSTLPEEX  411 (778)
T ss_dssp             HHTTTCC--HHHHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTC------CTTHHHHHHHHHHHTTCCCCCC
T ss_pred             HHHhcCC--ccHHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCC------CchHHHHHHHHHHHhcCCCccc
Confidence            6666542  23468899999999864 677888887 466999999998632      45678889999999876321  


Q ss_pred             -----------------------------------H-HHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch
Q 014817          186 -----------------------------------E-CMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ  229 (418)
Q Consensus       186 -----------------------------------~-~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~  229 (418)
                                                         + ++..+.+.|+++.|+.+++++++.+++.++++|.+|   +.++
T Consensus       412 ~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nL---S~d~  488 (778)
T 3opb_A          412 XXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNI---TRSK  488 (778)
T ss_dssp             CCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHH---HTSG
T ss_pred             chhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHH---cCCH
Confidence                                               1 567888999999999999999999999999999999   8889


Q ss_pred             hhhhHhhchhhhHHHHHHHhhcCCCC-hhhhHHHHHHHHHHccccccHHHHH--H-cCchHHHHHHhcC-CCcc------
Q 014817          230 ELRAQISNLDEIFEGVIDILKNLSSY-PRGLKVGIKALFALCLVKQTRYKAV--A-AGAAETLVDRLAD-FDKC------  298 (418)
Q Consensus       230 ~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~~~a~~aL~~L~~~~~n~~~i~--~-~G~v~~Lv~lL~~-~~~~------  298 (418)
                      ++|..+.. .|++++|+.+|.++... ...+..|+.||.+|....+....+-  + .|+|++|+++|.. ....      
T Consensus       489 ~~R~~lvq-qGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~  567 (778)
T 3opb_A          489 NFIPQLAQ-QGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHN  567 (778)
T ss_dssp             GGHHHHHH-TTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---
T ss_pred             HHHHHHHH-CCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccc
Confidence            99999976 79999999999988311 1278999999999996655444331  1 3999999999983 2111      


Q ss_pred             ------c-HHHHHHHHHHHhcCH-----hHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH-HHHHh
Q 014817          299 ------D-AERALATVELLCRIP-----AGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ-RDAVS  365 (418)
Q Consensus       299 ------~-~~~a~~~L~~L~~~~-----~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~-~~~~~  365 (418)
                            + +..|+.+|.||+..+     +.|..++.+.|+++.|+.+|.+++..+++.|++++.||+. +++.+ +.+.+
T Consensus       568 ~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~-~~e~i~~k~~~  646 (778)
T 3opb_A          568 DEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMS-HPLTIAAKFFN  646 (778)
T ss_dssp             CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHT-SGGGTGGGTSC
T ss_pred             cccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHh
Confidence                  1 668999999999865     4578788744899999999999999999999999999998 55543 34432


Q ss_pred             c------ChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          366 A------GVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       366 ~------g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      .      +.++.|+.+++++ +...|++|+++|.|+..
T Consensus       647 ~~~~~~~~rL~lLV~Ll~s~-D~~~r~AAagALAnLts  683 (778)
T 3opb_A          647 LENPQSLRNFNILVKLLQLS-DVESQRAVAAIFANIAT  683 (778)
T ss_dssp             CSSHHHHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             hcCchhhccHHHHHHHHcCC-CHHHHHHHHHHHHHhcC
Confidence            2      2478899999777 99999999999999964

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.85  E-value=9e-22  Score=151.79  Aligned_cols=78  Identities=33%  Similarity=0.494  Sum_probs=71.3

Q ss_pred             CcCCCCCCCcccCcCccccccCCeecCCC-CcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhccC
Q 014817            8 LDLSVQIPYHFRCPISLELMCDPVTVCTG-QTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRS   86 (418)
Q Consensus         8 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g-~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~~   86 (418)
                      .....++|++|+||||+++|+|||+++|| |+|||.||++||.. ..+||.|++++...++.||..|+++|+.|+.++..
T Consensus        13 ~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~   91 (98)
T 1wgm_A           13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERKQ   91 (98)
T ss_dssp             CCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHSTT
T ss_pred             hhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHcch
Confidence            33445789999999999999999999999 99999999999986 67899999999999999999999999999998753

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.85  E-value=6.2e-22  Score=148.95  Aligned_cols=73  Identities=33%  Similarity=0.479  Sum_probs=69.0

Q ss_pred             CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817           12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR   85 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~   85 (418)
                      ..+|++|.||||+++|+|||+++|||+|||.||++||.. ..+||.|++++...++.||..|+++|+.|+.++.
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~~~   81 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMREKQ   81 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             hcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHHhh
Confidence            578999999999999999999999999999999999985 6889999999998899999999999999999874

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.85  E-value=8.8e-22  Score=152.44  Aligned_cols=75  Identities=32%  Similarity=0.470  Sum_probs=70.1

Q ss_pred             CCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhccC
Q 014817           11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRS   86 (418)
Q Consensus        11 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~~   86 (418)
                      ..++|++|.||||+++|+|||+++|||+|||.||++||.. ..+||.|++++...++.||..|+++|+.|+.+|..
T Consensus        23 ~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~~~   97 (100)
T 2kre_A           23 YSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREKQN   97 (100)
T ss_dssp             CSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTTTC
T ss_pred             hccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHhhh
Confidence            3578999999999999999999999999999999999984 78899999999999999999999999999998753

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.81  E-value=1.6e-20  Score=159.35  Aligned_cols=75  Identities=39%  Similarity=0.529  Sum_probs=69.8

Q ss_pred             CCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817           11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR   85 (418)
Q Consensus        11 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~   85 (418)
                      ..++|++|+||||+++|+|||+++|||+|||.||++|+..+..+||.|+.++...++.||..|+++|+.|+..|+
T Consensus       100 ~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~  174 (179)
T 2f42_A          100 KREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENG  174 (179)
T ss_dssp             CCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCT
T ss_pred             ccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCC
Confidence            468899999999999999999999999999999999998644579999999998899999999999999999874

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.80  E-value=4e-20  Score=137.31  Aligned_cols=75  Identities=52%  Similarity=0.933  Sum_probs=70.3

Q ss_pred             CCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817           11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR   85 (418)
Q Consensus        11 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~   85 (418)
                      +.+++++|.||||+++|+|||+++|||+||+.||.+|+..+..+||.|+.++...++.+|..++++|+.|..+|+
T Consensus         2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~~   76 (78)
T 1t1h_A            2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG   76 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred             CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHcC
Confidence            457899999999999999999999999999999999998778899999999998899999999999999999874

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.76  E-value=3.8e-19  Score=136.52  Aligned_cols=74  Identities=27%  Similarity=0.453  Sum_probs=65.0

Q ss_pred             CCCCcccCcCccccccCCeecC-CCCcccHHHHHHHHHcC-----CCCCCC--CCCC-CCCCCCcccHHHHHHHHHHHHh
Q 014817           13 QIPYHFRCPISLELMCDPVTVC-TGQTYDRPSIESWVATG-----NTTCPV--TRSP-LTDFTLIPNHTLRRLIQDWCVA   83 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~-----~~~cp~--~~~~-l~~~~l~~n~~L~~~i~~~~~~   83 (418)
                      ..+++|.||||+++|+|||+++ |||+|||.||++||..+     ..+||+  |... +...++.||..|+++|+.|+.+
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~   82 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK   82 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence            5678999999999999999996 99999999999999753     468999  5544 8888999999999999999988


Q ss_pred             ccC
Q 014817           84 NRS   86 (418)
Q Consensus        84 ~~~   86 (418)
                      +..
T Consensus        83 ~~r   85 (94)
T 2yu4_A           83 RHR   85 (94)
T ss_dssp             CCS
T ss_pred             hcc
Confidence            653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.74  E-value=1.3e-18  Score=161.98  Aligned_cols=76  Identities=38%  Similarity=0.520  Sum_probs=70.5

Q ss_pred             CCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817           10 LSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR   85 (418)
Q Consensus        10 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~   85 (418)
                      ...++|++|.||||+++|+|||+++|||||||.||++|+..+..+||.|+.+++..++.||..|+++|+.|+.+|+
T Consensus       201 ~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~  276 (281)
T 2c2l_A          201 KKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG  276 (281)
T ss_dssp             SCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred             cCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCC
Confidence            3468899999999999999999999999999999999998766679999999998899999999999999998874

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.72  E-value=6e-16  Score=154.68  Aligned_cols=289  Identities=19%  Similarity=0.158  Sum_probs=220.4

Q ss_pred             CCCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHH
Q 014817           95 PKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESL  174 (418)
Q Consensus        95 p~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~  174 (418)
                      |..+...+.|+.|+.++.++.. .+.|+.|+..|+.++++   .+. -+..++++.|+..|..+.+     +.++...++
T Consensus        14 ~~~qs~~etI~~L~~Rl~~~tl-~eDRR~Av~~Lk~~sk~---y~~-~Vg~~~l~~li~~L~~d~~-----D~e~v~~~L   83 (651)
T 3grl_A           14 GPQHTEAETIQKLCDRVASSTL-LDDRRNAVRALKSLSKK---YRL-EVGIQAMEHLIHVLQTDRS-----DSEIIGYAL   83 (651)
T ss_dssp             ----CHHHHHHHHHHHHHHCCS-HHHHHHHHHHHHHTTTT---TTT-HHHHHTHHHHHHHHHSCTT-----CHHHHHHHH
T ss_pred             CCCCChhhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHH---hHH-HhhhhhHHHHHHHHhcccc-----cHHHHHHHH
Confidence            3334456789999999987643 34588999999999864   333 3447889999999988753     788889999


Q ss_pred             HHHhcCCCChhH-----------------HHhhc-ccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh
Q 014817          175 ALLVMFPLTETE-----------------CMEIA-SDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS  236 (418)
Q Consensus       175 ~~L~~l~~~~~~-----------------~~~~i-~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~  236 (418)
                      .+|.++...+++                 ..+.+ .+.+.|+.|+.+|++.+..+|.+++..|..|+. ...+.+.+.|.
T Consensus        84 etL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~-~r~~~~Q~~Il  162 (651)
T 3grl_A           84 DTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLK-QLGPQVQQIIL  162 (651)
T ss_dssp             HHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHH-HSHHHHHHHHH
T ss_pred             HHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence            988765433211                 12233 367889999999999999999999999999963 33344777786


Q ss_pred             chhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH-cCchHHHHHHhcCCC----cccHHHHHHHHHHHh
Q 014817          237 NLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA-AGAAETLVDRLADFD----KCDAERALATVELLC  311 (418)
Q Consensus       237 ~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~-~G~v~~Lv~lL~~~~----~~~~~~a~~~L~~L~  311 (418)
                      ...++|+.|+.+|.+.  ...++..++.+|.+|+.++.+.++++. .|+++.|+.++....    ..+++.++.+|.+|.
T Consensus       163 ~~p~gi~~Lv~lL~d~--rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLL  240 (651)
T 3grl_A          163 VSPMGVSRLMDLLADS--REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLL  240 (651)
T ss_dssp             HSTTHHHHHHGGGGCS--SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHH
T ss_pred             hCcccHHHHHHHHhCc--hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHH
Confidence            5579999999999988  788999999999999999887777766 699999999997532    367899999999999


Q ss_pred             cC-HhHHHHHHhccCChHHHHHHHhcCChH------HHHH---HHHHHHHHhcC------CHHHHHHHHhcChHHHHHHH
Q 014817          312 RI-PAGCAEFAEHALTVPLLVKTILKISDR------ATEY---AAGALAALCSA------SERCQRDAVSAGVLTQLLLL  375 (418)
Q Consensus       312 ~~-~~~~~~i~~~~g~i~~Lv~~l~~~~~~------~~~~---A~~~L~~l~~~------~~~~~~~~~~~g~i~~L~~l  375 (418)
                      .+ ..++..+.+. |+++.|..++..+...      .-.+   ++.++.-++..      ++.++..+.+.|++..|+++
T Consensus       241 r~N~sNQ~~FrEt-~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~l  319 (651)
T 3grl_A          241 KNNNSNQNFFKEG-SYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTI  319 (651)
T ss_dssp             TTCHHHHHHHHHT-TCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred             hcCHHHHHHHHHc-CCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHH
Confidence            75 4577777775 9999999988653221      1223   55666666663      34678889999999999999


Q ss_pred             HhhCC-CHHHHHHHHHHHHHHHh
Q 014817          376 VQSDC-TDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       376 l~~~~-~~~~~~~A~~~L~~l~~  397 (418)
                      +.+.+ ...++..|..++..+.+
T Consensus       320 l~~~~~p~~i~~~Al~tla~~ir  342 (651)
T 3grl_A          320 LMATGVPADILTETINTVSEVIR  342 (651)
T ss_dssp             HTCSSCCHHHHHHHHHHHHHHHT
T ss_pred             HccCCCCHHHHHHHHHHHHHHHh
Confidence            97543 57788888887777655

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.67  E-value=1.1e-16  Score=122.63  Aligned_cols=75  Identities=24%  Similarity=0.394  Sum_probs=67.6

Q ss_pred             CCCCCCcccCcCccccccCCeecC-CCCcccHHHHHHHHHc-CCCCCCCCCCCC-CCCCCcccHHHHHHHHHHHHhcc
Q 014817           11 SVQIPYHFRCPISLELMCDPVTVC-TGQTYDRPSIESWVAT-GNTTCPVTRSPL-TDFTLIPNHTLRRLIQDWCVANR   85 (418)
Q Consensus        11 ~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~cp~~~~~l-~~~~l~~n~~L~~~i~~~~~~~~   85 (418)
                      ..+++++|.||||.++|.|||+++ |||+||+.||.+|+.. +...||.|+.++ ....+.+|..++++++.|...++
T Consensus         7 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~~~~   84 (92)
T 3ztg_A            7 DDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKNETG   84 (92)
T ss_dssp             CCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHHHHT
T ss_pred             cccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHHHHh
Confidence            357889999999999999999999 9999999999999974 457899999997 57789999999999999998764

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.59  E-value=1.8e-16  Score=110.38  Aligned_cols=54  Identities=22%  Similarity=0.382  Sum_probs=49.1

Q ss_pred             cccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccH
Q 014817           17 HFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNH   71 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~   71 (418)
                      .|.||||+++|+|||++ +|||+|||.+|++|+.. +.+||+|++++...+++|++
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence            58999999999999999 89999999999999986 45699999999998988875

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.59  E-value=2.9e-13  Score=135.40  Aligned_cols=285  Identities=11%  Similarity=0.073  Sum_probs=216.1

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChh-----------------hhhHH-hhcChHHHHHHHhhccccccc
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDK-----------------NRSLI-SSHNVRAILSQVFFTNINVKT  163 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~-----------------~~~~i-~~~g~i~~Lv~lL~~~~~~~~  163 (418)
                      ..++.|+..|+....|.+....++..|..+...++.                 +.+.+ .+.+.++.|+.+|.+.     
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~-----  134 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEF-----  134 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCC-----
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCc-----
Confidence            457889999988766655455677777665543322                 22233 3468999999999877     


Q ss_pred             CCChhHHHHHHHHHhcCCCChhH-HHhhcc-cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhh
Q 014817          164 ASSPELAHESLALLVMFPLTETE-CMEIAS-DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEI  241 (418)
Q Consensus       164 ~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~  241 (418)
                        +..++..++..|..|+....+ .++.|. .+++|+.|+.+|.+....+|..++.+|.+|   +.+....+.+...+|+
T Consensus       135 --df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~L---t~~n~~iQklVAFEna  209 (651)
T 3grl_A          135 --DFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQAL---TRSNGAIQKIVAFENA  209 (651)
T ss_dssp             --CHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHH---HTTCHHHHHHHHHTTH
T ss_pred             --cHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHH---hcCCHHHHHHHHHhcc
Confidence              578999999999988755434 777777 679999999999999999999999999999   5555555556566899


Q ss_pred             HHHHHHHhhcCCC--ChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcc------cHHH---HHHHHHH
Q 014817          242 FEGVIDILKNLSS--YPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKC------DAER---ALATVEL  309 (418)
Q Consensus       242 i~~Lv~lL~~~~~--~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~------~~~~---a~~~L~~  309 (418)
                      ++.|+.+++....  -..+...++.+|.||...+ .|+..+.|.|.++.|..+|..++..      ...+   ++.++..
T Consensus       210 Fe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrl  289 (651)
T 3grl_A          210 FERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRV  289 (651)
T ss_dssp             HHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHH
Confidence            9999999987510  1367889999999999775 5999999999999999999754321      2233   6777777


Q ss_pred             HhcC-------HhHHHHHHhccCChHHHHHHHhcC--ChHHHHHHHHHHHHHhcCCHHHHHHHHhcC---------hHHH
Q 014817          310 LCRI-------PAGCAEFAEHALTVPLLVKTILKI--SDRATEYAAGALAALCSASERCQRDAVSAG---------VLTQ  371 (418)
Q Consensus       310 L~~~-------~~~~~~i~~~~g~i~~Lv~~l~~~--~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g---------~i~~  371 (418)
                      |...       ..++..+.+. |+++.|++++...  ...++..|+.++..+.++++..+..+.+..         ++..
T Consensus       290 Lv~~~~~~~~t~~nQ~~~~~~-g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~l  368 (651)
T 3grl_A          290 LVSPNNPPGATSSCQKAMFQC-GLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVL  368 (651)
T ss_dssp             HTCTTSCHHHHHHHHHHHHHT-THHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHH
T ss_pred             HhCCCCCCCCCHHHHHHHHHC-CCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHH
Confidence            7743       2466777775 9999999999874  677899999999999999999998887654         3333


Q ss_pred             HHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          372 LLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       372 L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      |+.++.+......|-+|+..++....
T Consensus       369 L~~~~~~~~~~~lR~Aa~~cl~ay~~  394 (651)
T 3grl_A          369 LMSMVNERQPFVLRCAVLYCFQCFLY  394 (651)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHhcccccHHHHHHHHHHHHHHHh
Confidence            44445444467888888888887764

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.58  E-value=1.1e-15  Score=123.77  Aligned_cols=71  Identities=17%  Similarity=0.355  Sum_probs=63.6

Q ss_pred             CCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC-CCCcccHHHHHHHHHHHHh
Q 014817           13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD-FTLIPNHTLRRLIQDWCVA   83 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~-~~l~~n~~L~~~i~~~~~~   83 (418)
                      .+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++.. ..+.+|..++.+++.|...
T Consensus        48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p~  119 (124)
T 3fl2_A           48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFPG  119 (124)
T ss_dssp             HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHSTT
T ss_pred             hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHccc
Confidence            4466789999999999999999999999999999998666789999999976 7899999999999888643

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.54  E-value=1.5e-15  Score=134.75  Aligned_cols=70  Identities=13%  Similarity=0.254  Sum_probs=63.3

Q ss_pred             CCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHc-CCCCCCC--CCCCCCCCCCcccHHHHHHHHHHHHh
Q 014817           14 IPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVAT-GNTTCPV--TRSPLTDFTLIPNHTLRRLIQDWCVA   83 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~-~~~~cp~--~~~~l~~~~l~~n~~L~~~i~~~~~~   83 (418)
                      ...+|+||||+++|+|||++ .|||+|||.||.+||.. +...||+  |++.+...++.||..|+++|+.|..+
T Consensus       178 ~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~r  251 (267)
T 3htk_C          178 GKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKMK  251 (267)
T ss_dssp             SBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHHH
T ss_pred             CceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHHH
Confidence            45679999999999999986 99999999999999985 3567999  99999999999999999999999775

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.54  E-value=3.5e-15  Score=124.48  Aligned_cols=70  Identities=23%  Similarity=0.364  Sum_probs=63.4

Q ss_pred             CCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC-CCcccHHHHHHHHHHHH
Q 014817           13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF-TLIPNHTLRRLIQDWCV   82 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~-~l~~n~~L~~~i~~~~~   82 (418)
                      .+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++... .+.+|..++++++.|..
T Consensus        74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~p  144 (150)
T 1z6u_A           74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFFP  144 (150)
T ss_dssp             HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHST
T ss_pred             hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHhh
Confidence            35667899999999999999999999999999999997667899999999866 89999999999998864

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.54  E-value=1.5e-15  Score=121.43  Aligned_cols=79  Identities=24%  Similarity=0.397  Sum_probs=67.7

Q ss_pred             CCCCCCcCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC-------CCCcccHHHHH
Q 014817            3 GSLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD-------FTLIPNHTLRR   75 (418)
Q Consensus         3 ~~~~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~-------~~l~~n~~L~~   75 (418)
                      |+|+.........+++.||||.+.|.+||+++|||+||+.||.+|+..+...||.|+..+..       .++..|..+..
T Consensus         1 gsm~~~~~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~   80 (115)
T 3l11_A            1 GSMALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWT   80 (115)
T ss_dssp             -CCCCCTTCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHH
T ss_pred             CCCcccccccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHH
Confidence            56777666667778999999999999999999999999999999998767889999998853       56677888888


Q ss_pred             HHHHHH
Q 014817           76 LIQDWC   81 (418)
Q Consensus        76 ~i~~~~   81 (418)
                      +++.|.
T Consensus        81 ~i~~~~   86 (115)
T 3l11_A           81 IIQKHY   86 (115)
T ss_dssp             HHHHHS
T ss_pred             HHHHHC
Confidence            888875

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.50  E-value=7.9e-15  Score=113.82  Aligned_cols=72  Identities=22%  Similarity=0.355  Sum_probs=64.9

Q ss_pred             CCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817           13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR   85 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~   85 (418)
                      .+++++.||||.+.|.+|+++ +|||+||+.||.+|+.. ...||.|+..+...++.+|..++++++.|.....
T Consensus        18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~~~~   90 (99)
T 2y43_A           18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNFARN   90 (99)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHH
T ss_pred             hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHHHHH
Confidence            445678999999999999998 89999999999999985 5789999999988889999999999999988653

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.50  E-value=1.1e-14  Score=150.71  Aligned_cols=74  Identities=27%  Similarity=0.426  Sum_probs=69.7

Q ss_pred             CCCCCcccCcCccccccCCeecCCC-CcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhccC
Q 014817           12 VQIPYHFRCPISLELMCDPVTVCTG-QTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANRS   86 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~~~dPv~~~~g-~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~~   86 (418)
                      .++|++|+|||++++|+|||++++| +||+|.+|++|+.. +.+||.|++++...+++||++|++.|+.|+.++..
T Consensus       886 ~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~~~~~  960 (968)
T 3m62_A          886 GDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKKQKKE  960 (968)
T ss_dssp             CCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHHHHHT
T ss_pred             cCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999997 79999999999986 67999999999999999999999999999998754

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=3.5e-14  Score=101.34  Aligned_cols=60  Identities=8%  Similarity=0.346  Sum_probs=51.8

Q ss_pred             CcCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014817            8 LDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTL   67 (418)
Q Consensus         8 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l   67 (418)
                      ......+++++.||||++.+++|++++|||+||+.||.+|+..+...||.|+.++...++
T Consensus         6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A            6 SGFVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             SCSCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             hhhhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            334457788999999999999999999999999999999997667889999999876543

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.49  E-value=3.8e-14  Score=103.56  Aligned_cols=65  Identities=22%  Similarity=0.298  Sum_probs=53.1

Q ss_pred             CCCcCCCCCCCcccCcCccccccCCeecC-CCCcccHHHHHHHHHc-CCCCCCCCCCCCC-CCCCccc
Q 014817            6 EPLDLSVQIPYHFRCPISLELMCDPVTVC-TGQTYDRPSIESWVAT-GNTTCPVTRSPLT-DFTLIPN   70 (418)
Q Consensus         6 ~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~cp~~~~~l~-~~~l~~n   70 (418)
                      +......++++++.||||++.|.+||+++ |||+||+.||.+|+.. +...||.|++++. ...+.+|
T Consensus         4 ~~~~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A            4 GSSGEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             SCCSCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             CcccccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            34445568889999999999999999999 9999999999999985 3468999999864 3444444

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.48  E-value=1.9e-14  Score=111.71  Aligned_cols=72  Identities=22%  Similarity=0.322  Sum_probs=63.7

Q ss_pred             CCCCcccCcCccccccCCee-cCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817           13 QIPYHFRCPISLELMCDPVT-VCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN   84 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~-~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~   84 (418)
                      .+.+++.||||++.|.+||+ ++|||+||+.||.+|+......||.|+.++...++.+|..+.++++...+..
T Consensus        18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~~l~   90 (100)
T 3lrq_A           18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLDTLQ   90 (100)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHHHHC
T ss_pred             cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHHHHH
Confidence            45667899999999999999 8999999999999999975578999999999888999988888887776653

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.48  E-value=1e-14  Score=109.85  Aligned_cols=66  Identities=29%  Similarity=0.457  Sum_probs=57.2

Q ss_pred             CCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcC-----CCCCCCCCCCCCCCCCcccHHHHH
Q 014817           10 LSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATG-----NTTCPVTRSPLTDFTLIPNHTLRR   75 (418)
Q Consensus        10 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~-----~~~cp~~~~~l~~~~l~~n~~L~~   75 (418)
                      ....+.+++.||||.+.+.+|++++|||+||+.||.+|+...     ...||.|+..+...++.+|..+++
T Consensus        12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecw_A           12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN   82 (85)
T ss_dssp             CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred             HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence            345678899999999999999999999999999999999862     668999999998888888876544

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.47  E-value=1.9e-15  Score=112.17  Aligned_cols=66  Identities=26%  Similarity=0.417  Sum_probs=56.9

Q ss_pred             CCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcC------CCCCCCCCCCCCCCCCcccHHHHH
Q 014817           10 LSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATG------NTTCPVTRSPLTDFTLIPNHTLRR   75 (418)
Q Consensus        10 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~------~~~cp~~~~~l~~~~l~~n~~L~~   75 (418)
                      ....+.+++.||||.+.|.+|++++|||+||+.||.+|+...      ...||.|+..+...++.+|..+++
T Consensus         5 ~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~   76 (79)
T 2egp_A            5 SSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN   76 (79)
T ss_dssp             SSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred             hHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence            345778899999999999999999999999999999998752      568999999998878888776544

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.2e-13  Score=100.36  Aligned_cols=61  Identities=13%  Similarity=0.176  Sum_probs=53.2

Q ss_pred             cCCCCCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817            9 DLSVQIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN   70 (418)
Q Consensus         9 ~~~~~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n   70 (418)
                      ....++.+++.||||++.|.+|+++ +|||+||+.||.+|+.. ...||.|+..+...++.++
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A            7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred             hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence            3445778899999999999999998 99999999999999986 6789999999987776554

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.46  E-value=3.6e-14  Score=111.89  Aligned_cols=69  Identities=14%  Similarity=0.331  Sum_probs=61.2

Q ss_pred             CCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC----CCcccHHHHHHHHHHHH
Q 014817           13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDF----TLIPNHTLRRLIQDWCV   82 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~----~l~~n~~L~~~i~~~~~   82 (418)
                      .+++++.||||.+.|.+||++ +|||+||+.||.+|+.. ...||.|+..+...    .+.+|..+.++++.|..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             HHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred             ccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence            567889999999999999998 99999999999999986 58899999998765    67889999999888744

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=1.5e-14  Score=108.96  Aligned_cols=67  Identities=24%  Similarity=0.539  Sum_probs=57.5

Q ss_pred             cCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHc-----CCCCCCCCCCCCCCCCCcccHHHHH
Q 014817            9 DLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT-----GNTTCPVTRSPLTDFTLIPNHTLRR   75 (418)
Q Consensus         9 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~-----~~~~cp~~~~~l~~~~l~~n~~L~~   75 (418)
                      .....+.+++.||||.+.+++|++++|||+||+.||.+|+..     +...||.|+..+...++.+|..+++
T Consensus        11 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecv_A           11 GILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN   82 (85)
T ss_dssp             CCCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred             HHHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence            334577889999999999999999999999999999999875     3678999999998888888876544

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.4e-13  Score=102.49  Aligned_cols=65  Identities=17%  Similarity=0.207  Sum_probs=54.7

Q ss_pred             cCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHH
Q 014817            9 DLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRR   75 (418)
Q Consensus         9 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~   75 (418)
                      ....+...++.||||.+.|.+|++++|||+||+.||.+|+.. ...||.|+.++. ..+.+|..+.+
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~~   71 (81)
T 2csy_A            7 GGSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELMA   71 (81)
T ss_dssp             CCSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHHH
T ss_pred             CCcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHHH
Confidence            344566778999999999999999999999999999999985 678999999986 56677754433

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.45  E-value=4.8e-14  Score=113.02  Aligned_cols=71  Identities=21%  Similarity=0.412  Sum_probs=63.6

Q ss_pred             CCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHH
Q 014817           11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWC   81 (418)
Q Consensus        11 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~   81 (418)
                      ...+++++.||||+++|.+||+++|||+||+.||.+|+..+...||.|+.++...++.++..+.+.|..+.
T Consensus        12 ~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~   82 (118)
T 3hct_A           12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM   82 (118)
T ss_dssp             SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred             ccCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence            35788899999999999999999999999999999999875568999999998888889999988887753

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=1.6e-13  Score=96.95  Aligned_cols=54  Identities=24%  Similarity=0.466  Sum_probs=46.0

Q ss_pred             CCCCcCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHc--CCCCCCCC
Q 014817            5 LEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT--GNTTCPVT   58 (418)
Q Consensus         5 ~~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~cp~~   58 (418)
                      |+.......+.+++.||||.+.+.+|++++|||+||+.||.+|++.  +...||.|
T Consensus         8 ~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A            8 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             cchHHHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            3444445578889999999999999999999999999999999984  45679987

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.42  E-value=3e-14  Score=114.05  Aligned_cols=69  Identities=20%  Similarity=0.327  Sum_probs=63.0

Q ss_pred             CCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhc
Q 014817           13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVAN   84 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~   84 (418)
                      .+.+++.||||.++|.+||++ +|||+||+.||.+|+.   ..||.|+.++...++.+|..+..+++.|....
T Consensus        18 ~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~~~   87 (117)
T 1jm7_B           18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKLR   87 (117)
T ss_dssp             HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHHH
T ss_pred             hchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHHHH
Confidence            456789999999999999999 9999999999999987   67999999998889999999999999887754

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.42  E-value=2.2e-13  Score=99.28  Aligned_cols=62  Identities=21%  Similarity=0.428  Sum_probs=51.9

Q ss_pred             CCCcCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHc--CCCCCCCCCCCCCCCCC
Q 014817            6 EPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT--GNTTCPVTRSPLTDFTL   67 (418)
Q Consensus         6 ~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~cp~~~~~l~~~~l   67 (418)
                      +.......+.+++.||||.+.+.+|++++|||+||+.||.+|+..  +...||.|++++...++
T Consensus         9 ~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A            9 ASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             ccHHHHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            334444578889999999999999999999999999999999973  46689999998875543

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.42  E-value=7.3e-14  Score=118.95  Aligned_cols=71  Identities=23%  Similarity=0.419  Sum_probs=62.0

Q ss_pred             CCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCC-CCCCcccHHHHHHHHHHHHh
Q 014817           13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLT-DFTLIPNHTLRRLIQDWCVA   83 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~-~~~l~~n~~L~~~i~~~~~~   83 (418)
                      .+.+++.||||.+.|.+||++ +|||+||+.||.+|+..+...||.|+.++. ...+.+|..+..+|..|...
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~  122 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS  122 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence            455678999999999999998 999999999999999977888999999984 56689999999999998654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.40  E-value=2.5e-11  Score=107.36  Aligned_cols=189  Identities=17%  Similarity=0.058  Sum_probs=156.5

Q ss_pred             cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817          145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLA  224 (418)
Q Consensus       145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~  224 (418)
                      .+.++.|+..|.++       ++.++..|+.+|..+..           .+.++.|++.|.++++.+|..++.+|..+  
T Consensus        18 ~~~~~~L~~~L~~~-------~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~--   77 (211)
T 3ltm_A           18 PEKVEMYIKNLQDD-------SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQI--   77 (211)
T ss_dssp             GGGHHHHHHHTTCS-------SHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHH--
T ss_pred             HhHHHHHHHHHcCC-------CHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhh--
Confidence            56789999999866       68999999999987542           36789999999999999999999999998  


Q ss_pred             cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817          225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERAL  304 (418)
Q Consensus       225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~  304 (418)
                       ..           .+.++.|+.+|.+.  ++.++..|+.+|..+..          .++++.|+.+|.+++..++..++
T Consensus        78 -~~-----------~~~~~~L~~~l~~~--~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~  133 (211)
T 3ltm_A           78 -GD-----------ERAVEPLIKALKDE--DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAA  133 (211)
T ss_dssp             -CC-----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHH
T ss_pred             -CC-----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHH
Confidence             31           35789999999988  89999999999998853          35889999999998999999999


Q ss_pred             HHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHH
Q 014817          305 ATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRA  384 (418)
Q Consensus       305 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  384 (418)
                      .+|..+..           ...++.|++++.+.++.++..|+.+|..+..           ..+++.|..+++++ ++.+
T Consensus       134 ~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~v  190 (211)
T 3ltm_A          134 FALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETG-TGFA  190 (211)
T ss_dssp             HHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHC-CHHH
T ss_pred             HHHHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCC-CHHH
Confidence            99998753           3578899999988999999999999999853           23667788888777 9999


Q ss_pred             HHHHHHHHHHHHhhCC
Q 014817          385 KRKAQLLLKLLRDSWP  400 (418)
Q Consensus       385 ~~~A~~~L~~l~~~~~  400 (418)
                      |+.|...|..+.....
T Consensus       191 r~~A~~aL~~~~~~~~  206 (211)
T 3ltm_A          191 RKVAVNYLETHKSFNH  206 (211)
T ss_dssp             HHHHHHHHHC------
T ss_pred             HHHHHHHHHhcCCCCC
Confidence            9999999999988754

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.38  E-value=2e-13  Score=108.41  Aligned_cols=69  Identities=19%  Similarity=0.430  Sum_probs=58.3

Q ss_pred             CCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcC--CCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 014817           14 IPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATG--NTTCPVTRSPLTDFTLIPNHTLRRLIQDWCV   82 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~--~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~   82 (418)
                      +.+++.||||.+.+.+|++++|||+||+.||.+|+...  ...||.|+.++...++.+|..+..+++.+..
T Consensus        18 ~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~~   88 (112)
T 1jm7_A           18 MQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (112)
T ss_dssp             HHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             ccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHHH
Confidence            45578999999999999999999999999999999853  3589999999988888888766666666543

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.38  E-value=1e-13  Score=110.74  Aligned_cols=69  Identities=19%  Similarity=0.342  Sum_probs=56.7

Q ss_pred             CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCc-ccHHHHHHHHHH
Q 014817           12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLI-PNHTLRRLIQDW   80 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~-~n~~L~~~i~~~   80 (418)
                      .++++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++...++. ++..+.+++..+
T Consensus        18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l   87 (116)
T 1rmd_A           18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL   87 (116)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred             HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence            455667899999999999999999999999999999987667899999999866653 455566655443

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.36  E-value=2.7e-13  Score=111.78  Aligned_cols=63  Identities=21%  Similarity=0.417  Sum_probs=50.6

Q ss_pred             CCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 014817           15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDW   80 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~   80 (418)
                      .+++.||||.+.|.|||+++|||+||+.||.+|+.. ..+||.|+.++....  .+..+...+..+
T Consensus        51 ~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~--~~~~~~~~i~~~  113 (138)
T 4ayc_A           51 ENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT--YSLVLDNCINKM  113 (138)
T ss_dssp             HHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCEE--ECHHHHHHHHHH
T ss_pred             cccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCCC--CccchhHHHHHH
Confidence            457899999999999999999999999999999985 678999999885432  344444444444

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.36  E-value=5.6e-13  Score=94.70  Aligned_cols=55  Identities=18%  Similarity=0.334  Sum_probs=48.6

Q ss_pred             CcccCcCccc-cccCC----eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817           16 YHFRCPISLE-LMCDP----VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN   70 (418)
Q Consensus        16 ~~~~Cpi~~~-~~~dP----v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n   70 (418)
                      +++.||||.+ .+.+|    ++++|||+||+.||.+|+.++...||.|+.++...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            4688999999 99999    5789999999999999998767889999999987777654

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.34  E-value=1.2e-12  Score=90.62  Aligned_cols=51  Identities=22%  Similarity=0.511  Sum_probs=44.4

Q ss_pred             CcCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHc--CCCCCCCC
Q 014817            8 LDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT--GNTTCPVT   58 (418)
Q Consensus         8 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~cp~~   58 (418)
                      ......+.+++.||||.+.+++|++++|||+||+.||.+|+..  ....||.|
T Consensus         6 ~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            6 SGALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SSCSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hhHhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            4445577889999999999999999999999999999999764  46789987

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.34  E-value=1e-10  Score=102.57  Aligned_cols=186  Identities=18%  Similarity=0.079  Sum_probs=156.7

Q ss_pred             cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817          145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLA  224 (418)
Q Consensus       145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~  224 (418)
                      .+..+.++++|.++       ++.++..|+.+|..+..           .+.++.|++.|.++++.+|..++.+|..+  
T Consensus        13 ~~~~~~~i~~L~~~-------~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~--   72 (201)
T 3ltj_A           13 PEKVEMYIKNLQDD-------SYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQI--   72 (201)
T ss_dssp             HHHHHHHHHHTTCS-------CHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH--
T ss_pred             CcchHHHHHHhcCC-------CHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhh--
Confidence            46788999999887       68999999999987542           35789999999999999999999999988  


Q ss_pred             cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817          225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERAL  304 (418)
Q Consensus       225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~  304 (418)
                       ..           .++++.|+.+|.+.  ++.++..|+++|.++..          ..+++.|+.+|.+.+..++..++
T Consensus        73 -~~-----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~  128 (201)
T 3ltj_A           73 -GD-----------ERAVEPLIKALKDE--DGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAA  128 (201)
T ss_dssp             -CC-----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHH
T ss_pred             -CC-----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHH
Confidence             32           24789999999987  89999999999998853          35889999999988889999999


Q ss_pred             HHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHH
Q 014817          305 ATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRA  384 (418)
Q Consensus       305 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  384 (418)
                      .+|..+..           ...++.|+.++.+.++.++..|+.+|..+..  +         .+++.|..+++++ ++.+
T Consensus       129 ~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~--~---------~~~~~L~~~l~d~-~~~v  185 (201)
T 3ltj_A          129 FALGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG--E---------RVRAAMEKLAETG-TGFA  185 (201)
T ss_dssp             HHHHHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS--H---------HHHHHHHHHHHHC-CHHH
T ss_pred             HHHHHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc--h---------hHHHHHHHHHhCC-CHHH
Confidence            99988753           3678999999988999999999999999842  2         2677888888777 9999


Q ss_pred             HHHHHHHHHHHHh
Q 014817          385 KRKAQLLLKLLRD  397 (418)
Q Consensus       385 ~~~A~~~L~~l~~  397 (418)
                      |..|...|..+..
T Consensus       186 r~~A~~aL~~l~~  198 (201)
T 3ltj_A          186 RKVAVNYLETHKS  198 (201)
T ss_dssp             HHHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999987653

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.31  E-value=7.9e-13  Score=113.15  Aligned_cols=70  Identities=21%  Similarity=0.422  Sum_probs=62.7

Q ss_pred             CCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHH
Q 014817           11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDW   80 (418)
Q Consensus        11 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~   80 (418)
                      ...++++|.||||.++|++||+++|||+||+.||.+|+..+..+||.|+.++...++.++..+.+.|..+
T Consensus        12 ~~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l   81 (170)
T 3hcs_A           12 DPPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSL   81 (170)
T ss_dssp             SSCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTS
T ss_pred             ccCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhc
Confidence            3478889999999999999999999999999999999986566999999999888888998888877764

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.1e-12  Score=94.87  Aligned_cols=56  Identities=13%  Similarity=0.193  Sum_probs=48.0

Q ss_pred             CcCCCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817            8 LDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus         8 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      ........+++.||||++.+++|++++|||+||+.||.+|+.. ..+||.|+..+..
T Consensus         6 s~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~   61 (71)
T 2d8t_A            6 SGNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE   61 (71)
T ss_dssp             CCCCCSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred             CCCcccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence            3334456678999999999999999999999999999999986 5789999988753

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.30  E-value=2.2e-13  Score=112.19  Aligned_cols=67  Identities=15%  Similarity=0.329  Sum_probs=55.7

Q ss_pred             CCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC---------CCCcccHHHHHHHHH
Q 014817           13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD---------FTLIPNHTLRRLIQD   79 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~---------~~l~~n~~L~~~i~~   79 (418)
                      .++++|.||||.++|++||+++|||+||+.||.+|+..+...||.|+.++..         ..+.++..+++.|..
T Consensus        27 ~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~  102 (141)
T 3knv_A           27 KLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES  102 (141)
T ss_dssp             GCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred             cCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence            5678899999999999999999999999999999998766789999986532         234577777776654

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=3.6e-12  Score=96.40  Aligned_cols=58  Identities=21%  Similarity=0.328  Sum_probs=49.8

Q ss_pred             CcCCCCCCCcccCcCccccccC----CeecCCCCcccHHHHHHHHHcC--CCCCCCCCCCCCCC
Q 014817            8 LDLSVQIPYHFRCPISLELMCD----PVTVCTGQTYDRPSIESWVATG--NTTCPVTRSPLTDF   65 (418)
Q Consensus         8 ~~~~~~~~~~~~Cpi~~~~~~d----Pv~~~~g~~~~r~~i~~~~~~~--~~~cp~~~~~l~~~   65 (418)
                      ......+.+++.||||.+.|.+    |++++|||+||+.||.+|+...  ...||.|+..+...
T Consensus         6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A            6 SGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             ccChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            3344577889999999999999    9999999999999999999863  47899999987644

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.29  E-value=3.1e-10  Score=104.87  Aligned_cols=225  Identities=12%  Similarity=-0.042  Sum_probs=160.5

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      .++.|++.|..++  ...+..|+..|..+..           .++++.|+.+|.++       ++.++..|+.+|..+..
T Consensus        24 ~i~~L~~~L~~~~--~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~-------~~~vR~~A~~aL~~l~~   83 (280)
T 1oyz_A           24 NDDELFRLLDDHN--SLKRISSARVLQLRGG-----------QDAVRLAIEFCSDK-------NYIRRDIGAFILGQIKI   83 (280)
T ss_dssp             CHHHHHHHTTCSS--HHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCS-------SHHHHHHHHHHHHHSCC
T ss_pred             hHHHHHHHHHcCC--HHHHHHHHHHHHccCC-----------chHHHHHHHHHcCC-------CHHHHHHHHHHHHHhcc
Confidence            3788999998653  3446788888888752           24688999999876       57899999999998874


Q ss_pred             ChhHHHhhcccCCchHHHH-HHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817          183 TETECMEIASDADKITSLS-SLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV  261 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv-~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  261 (418)
                      ......      ..++.|. .++++.++.+|..++++|..+   .....    . ....+++.|+.++.+.  ++.++..
T Consensus        84 ~~~~~~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l---~~~~~----~-~~~~~~~~L~~~l~d~--~~~vR~~  147 (280)
T 1oyz_A           84 CKKCED------NVFNILNNMALNDKSACVRATAIESTAQR---CKKNP----I-YSPKIVEQSQITAFDK--STNVRRA  147 (280)
T ss_dssp             CTTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHH---HHHCG----G-GHHHHHHHHHHHTTCS--CHHHHHH
T ss_pred             ccccch------HHHHHHHHHHhcCCCHHHHHHHHHHHHHH---hccCC----c-ccHHHHHHHHHHhhCC--CHHHHHH
Confidence            431111      1234444 245678899999999999999   32211    1 1135788999999988  8999999


Q ss_pred             HHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817          262 GIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRA  341 (418)
Q Consensus       262 a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~  341 (418)
                      |+.+|.++..          .++++.|+.+|.+++..++..++.+|..+....         ..+++.|+..+.+.++.+
T Consensus       148 a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~---------~~~~~~L~~~l~d~~~~v  208 (280)
T 1oyz_A          148 TAFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEV  208 (280)
T ss_dssp             HHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHhcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc---------HHHHHHHHHHhcCCCHHH
Confidence            9999988753          358999999999888888999999998874211         245677888888888888


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 014817          342 TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLR  396 (418)
Q Consensus       342 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~  396 (418)
                      +..|+.+|..+..           ..+++.|+.++..+ +  ++..|...|..+.
T Consensus       209 R~~A~~aL~~~~~-----------~~~~~~L~~~l~d~-~--vr~~a~~aL~~i~  249 (280)
T 1oyz_A          209 RIEAIIGLSYRKD-----------KRVLSVLCDELKKN-T--VYDDIIEAAGELG  249 (280)
T ss_dssp             HHHHHHHHHHTTC-----------GGGHHHHHHHHTSS-S--CCHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCC-----------HhhHHHHHHHhcCc-c--HHHHHHHHHHhcC
Confidence            8888888887652           34666666666543 2  5666666665553

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.29  E-value=2.5e-10  Score=100.85  Aligned_cols=187  Identities=17%  Similarity=0.056  Sum_probs=153.3

Q ss_pred             ChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817          100 EPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       100 ~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      ++..++.|++.|++++  ...+..|+..|..+..           .++++.|+.+|.++       ++.++..|+.+|..
T Consensus        17 ~~~~~~~L~~~L~~~~--~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~-------~~~vr~~a~~aL~~   76 (211)
T 3ltm_A           17 DPEKVEMYIKNLQDDS--YYVRRAAAYALGKIGD-----------ERAVEPLIKALKDE-------DAWVRRAAADALGQ   76 (211)
T ss_dssp             CGGGHHHHHHHTTCSS--HHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-------CHHHHHHHHHHHHH
T ss_pred             CHhHHHHHHHHHcCCC--HHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCC-------CHHHHHHHHHHHHh
Confidence            3567899999998653  4456788888887642           35789999999876       68999999999987


Q ss_pred             CCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817          180 FPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      +..           .+.++.|+..|++.++.+|..++.+|..+   ..           .+.++.|+.++.+.  ++.++
T Consensus        77 ~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~---~~-----------~~~~~~L~~~l~d~--~~~vr  129 (211)
T 3ltm_A           77 IGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQI---GD-----------ERAVEPLIKALKDE--DWFVR  129 (211)
T ss_dssp             HCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---CC-----------GGGHHHHHHHTTCS--SHHHH
T ss_pred             hCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh---Cc-----------HHHHHHHHHHHhCC--CHHHH
Confidence            642           35789999999999999999999999999   32           34789999999888  89999


Q ss_pred             HHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCCh
Q 014817          260 KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISD  339 (418)
Q Consensus       260 ~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~  339 (418)
                      ..|+.+|.++..          ..+++.|+.++.+++..++..++.+|..+..           ..+++.|.+++.++++
T Consensus       130 ~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~  188 (211)
T 3ltm_A          130 IAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTG  188 (211)
T ss_dssp             HHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCH
T ss_pred             HHHHHHHHHcCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCH
Confidence            999999999843          3578999999998888999999999998853           2457788888888999


Q ss_pred             HHHHHHHHHHHHHhc
Q 014817          340 RATEYAAGALAALCS  354 (418)
Q Consensus       340 ~~~~~A~~~L~~l~~  354 (418)
                      .++..|..+|.++..
T Consensus       189 ~vr~~A~~aL~~~~~  203 (211)
T 3ltm_A          189 FARKVAVNYLETHKS  203 (211)
T ss_dssp             HHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHhcCC
Confidence            999999999999877

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=3e-12  Score=92.02  Aligned_cols=59  Identities=15%  Similarity=0.328  Sum_probs=50.3

Q ss_pred             CCCCcCCCCCCCcccCcCccccccCC-------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817            5 LEPLDLSVQIPYHFRCPISLELMCDP-------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus         5 ~~~~~~~~~~~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      -+.......+.+++.||||++.+.+|       ++++|||+||+.||.+|+.. ..+||.|+.++..
T Consensus         3 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A            3 SGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CCCCCCCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             CCCCccccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            34444556778899999999999998       89999999999999999986 6789999988753

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.27  E-value=5.6e-10  Score=97.75  Aligned_cols=187  Identities=16%  Similarity=0.037  Sum_probs=154.4

Q ss_pred             CChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817           99 AEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV  178 (418)
Q Consensus        99 ~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~  178 (418)
                      ..+...+.+++.|.+++.  ..+..|+..|..+..           .++++.|+++|.++       ++.++..|+.+|.
T Consensus        11 ~~~~~~~~~i~~L~~~~~--~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~-------~~~vr~~a~~~L~   70 (201)
T 3ltj_A           11 TDPEKVEMYIKNLQDDSY--YVRRAAAYALGKIGD-----------ERAVEPLIKALKDE-------DAWVRRAAADALG   70 (201)
T ss_dssp             CCHHHHHHHHHHTTCSCH--HHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-------SHHHHHHHHHHHH
T ss_pred             cCCcchHHHHHHhcCCCH--HHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCC-------CHHHHHHHHHHHH
Confidence            456778999999988753  456888888887642           35789999999766       5889999999998


Q ss_pred             cCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817          179 MFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRG  258 (418)
Q Consensus       179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  258 (418)
                      .+..           ...++.|+..|.+.++.+|..|+++|..+   ..           ..+++.|+.++.+.  ++.+
T Consensus        71 ~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~---~~-----------~~~~~~L~~~l~d~--~~~v  123 (201)
T 3ltj_A           71 QIGD-----------ERAVEPLIKALKDEDGWVRQSAAVALGQI---GD-----------ERAVEPLIKALKDE--DWFV  123 (201)
T ss_dssp             HHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHH---CC-----------GGGHHHHHHHTTCS--SHHH
T ss_pred             hhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHh---Cc-----------HHHHHHHHHHHcCC--CHHH
Confidence            7642           35789999999999999999999999998   32           24788899999888  8999


Q ss_pred             hHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCC
Q 014817          259 LKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKIS  338 (418)
Q Consensus       259 ~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~  338 (418)
                      +..|+++|.++..          ..+++.|+.++.+.+..++..++.+|..+..           ..+++.|..++.+.+
T Consensus       124 r~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~  182 (201)
T 3ltj_A          124 RIAAAFALGEIGD----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGT  182 (201)
T ss_dssp             HHHHHHHHHHHTC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhCC----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCC
Confidence            9999999999853          4688999999998888999999999998842           245778888888899


Q ss_pred             hHHHHHHHHHHHHHh
Q 014817          339 DRATEYAAGALAALC  353 (418)
Q Consensus       339 ~~~~~~A~~~L~~l~  353 (418)
                      +.++..|..+|..+-
T Consensus       183 ~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          183 GFARKVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.26  E-value=2.3e-12  Score=93.28  Aligned_cols=57  Identities=18%  Similarity=0.356  Sum_probs=50.0

Q ss_pred             CCCCcccCcCccccccCC-------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817           13 QIPYHFRCPISLELMCDP-------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN   70 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n   70 (418)
                      ...+++.||||.+.|.+|       ++++|||+||+.||.+|+.. ..+||.|+.++...++.++
T Consensus         6 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   69 (71)
T 3ng2_A            6 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   69 (71)
T ss_dssp             CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred             CCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence            445678999999999999       89999999999999999986 5789999999987777654

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.22  E-value=1.2e-11  Score=91.19  Aligned_cols=63  Identities=19%  Similarity=0.364  Sum_probs=51.7

Q ss_pred             CCcCCCCCCCcccCcCccccccCC---eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817            7 PLDLSVQIPYHFRCPISLELMCDP---VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN   70 (418)
Q Consensus         7 ~~~~~~~~~~~~~Cpi~~~~~~dP---v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n   70 (418)
                      ....+.....++.||||++.|.+|   ++++|||+||+.||.+|+.. ..+||.|+..+...++.++
T Consensus         5 ~s~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A            5 SSGTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             CCCCCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred             CCCCcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence            344455677789999999999987   45699999999999999975 5789999999877666554

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.21  E-value=1.4e-11  Score=90.19  Aligned_cols=56  Identities=20%  Similarity=0.221  Sum_probs=46.9

Q ss_pred             CCCCCcccCcCccccc--cCCeecC--CCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014817           12 VQIPYHFRCPISLELM--CDPVTVC--TGQTYDRPSIESWVATGNTTCPVTRSPLTDFTL   67 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~~--~dPv~~~--~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l   67 (418)
                      ..+.+++.||||.+.+  .|+++.+  |||+||+.|+.+||..+...||.|++++....+
T Consensus         6 ~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            6 DAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             cccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            3567889999999999  4667766  999999999999997667889999999875443

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.21  E-value=7.9e-10  Score=102.11  Aligned_cols=200  Identities=12%  Similarity=0.052  Sum_probs=155.9

Q ss_pred             hhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHH
Q 014817          143 SSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIV  222 (418)
Q Consensus       143 ~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L  222 (418)
                      ...+.++.|+..|.++       ++.++..|+.+|..+..           .+.++.|+.+|++.++.+|..|+++|..+
T Consensus        20 ~~~~~i~~L~~~L~~~-------~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l   81 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDH-------NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQI   81 (280)
T ss_dssp             HHTSCHHHHHHHTTCS-------SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHS
T ss_pred             HHHhhHHHHHHHHHcC-------CHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            3457899999999876       58899999999998752           34689999999999999999999999998


Q ss_pred             HhcccchhhhhHhhchhhhHHHHHH-HhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHH
Q 014817          223 LAGMRSQELRAQISNLDEIFEGVID-ILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAE  301 (418)
Q Consensus       223 ~~~s~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~  301 (418)
                         ...+..   +   ...++.|.. ++.+.  ++.++..++++|.++.......    ...+++.|+.+|.+++..++.
T Consensus        82 ---~~~~~~---~---~~l~~~L~~~~~~d~--~~~vr~~a~~aL~~l~~~~~~~----~~~~~~~L~~~l~d~~~~vR~  146 (280)
T 1oyz_A           82 ---KICKKC---E---DNVFNILNNMALNDK--SACVRATAIESTAQRCKKNPIY----SPKIVEQSQITAFDKSTNVRR  146 (280)
T ss_dssp             ---CCCTTT---H---HHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHCGGG----HHHHHHHHHHHTTCSCHHHHH
T ss_pred             ---cccccc---c---hHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHhccCCcc----cHHHHHHHHHHhhCCCHHHHH
Confidence               433221   1   224555553 45555  8999999999999997433211    224688999999998999999


Q ss_pred             HHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCC
Q 014817          302 RALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCT  381 (418)
Q Consensus       302 ~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~  381 (418)
                      .++.+|..+..           .++++.|++++.+.+..++..|+++|..+...++         .+++.|+.+++++ +
T Consensus       147 ~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~~---------~~~~~L~~~l~d~-~  205 (280)
T 1oyz_A          147 ATAFAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNS---------DIRDCFVEMLQDK-N  205 (280)
T ss_dssp             HHHHHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCH---------HHHHHHHHHTTCS-C
T ss_pred             HHHHHHHhcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCcH---------HHHHHHHHHhcCC-C
Confidence            99999987653           3689999999999999999999999999864333         3567788888766 8


Q ss_pred             HHHHHHHHHHHHHHH
Q 014817          382 DRAKRKAQLLLKLLR  396 (418)
Q Consensus       382 ~~~~~~A~~~L~~l~  396 (418)
                      +.+|..|...|..+.
T Consensus       206 ~~vR~~A~~aL~~~~  220 (280)
T 1oyz_A          206 EEVRIEAIIGLSYRK  220 (280)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhC
Confidence            999999999998775

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.17  E-value=7e-12  Score=88.64  Aligned_cols=54  Identities=19%  Similarity=0.384  Sum_probs=47.6

Q ss_pred             CcccCcCccccccCC-------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817           16 YHFRCPISLELMCDP-------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN   70 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n   70 (418)
                      +++.||||.+.+.+|       ++++|||+||+.||.+|+.. ..+||.|+.++...++.+.
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   62 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   62 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence            467899999999998       88899999999999999986 6789999999987776553

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.12  E-value=6.1e-10  Score=115.95  Aligned_cols=195  Identities=15%  Similarity=0.069  Sum_probs=151.3

Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHH-HHhhcCCCChhhhHHHHHHHHHHccc--
Q 014817          196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVI-DILKNLSSYPRGLKVGIKALFALCLV--  272 (418)
Q Consensus       196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~~~a~~aL~~L~~~--  272 (418)
                      .|.++++.|++++++.|..|+++|.+|   ..+...+..+.. .|+|.+++ .+|.+.  +.+++..|+++|+||+..  
T Consensus        35 ~i~Pll~~L~S~~~~~r~~A~~al~~l---~~~~~~~~l~~~-~~~v~~ll~~lL~D~--~~~Vr~~A~gaLrnL~~~~g  108 (684)
T 4gmo_A           35 KILPVLKDLKSPDAKSRTTAAGAIANI---VQDAKCRKLLLR-EQVVHIVLTETLTDN--NIDSRAAGWEILKVLAQEEE  108 (684)
T ss_dssp             TTHHHHHHHSSSCCSHHHHHHHHHHHH---TTSHHHHHHHHH-TTHHHHHHHTTTTCS--CHHHHHHHHHHHHHHHHHSC
T ss_pred             hHHHHHHHcCCCCHHHHHHHHHHHHHH---HcCcHHHHHHHH-cCCHHHHHHHHcCCC--CHHHHHHHHHHHHHHHhhcC
Confidence            467788889999999999999999999   677777777755 67777655 567766  899999999999999965  


Q ss_pred             cccHHHHHHcCchHHHHHHhcCCC---------------------cccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHH
Q 014817          273 KQTRYKAVAAGAAETLVDRLADFD---------------------KCDAERALATVELLCR-IPAGCAEFAEHALTVPLL  330 (418)
Q Consensus       273 ~~n~~~i~~~G~v~~Lv~lL~~~~---------------------~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~L  330 (418)
                      .+.+..+++.|++++|..+|....                     ..+.++++.+|.+|+. +++..+.+.. .++++.|
T Consensus       109 ~d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~-~~~l~~l  187 (684)
T 4gmo_A          109 ADFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVAT-KQTILRL  187 (684)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHT-CHHHHHH
T ss_pred             chHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHh-cccHHHH
Confidence            467889999999999999985310                     0233567888999984 5566667777 4899999


Q ss_pred             HHHHhc---CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHH--HHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          331 VKTILK---ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQL--LLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       331 v~~l~~---~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L--~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +..|.+   ....++..|+.+|++++..+++..+.+.+.|....+  +..+..+ +...+..++++|.|+...
T Consensus       188 ~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~~~  259 (684)
T 4gmo_A          188 LFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVFTS  259 (684)
T ss_dssp             HHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHhhh
Confidence            999865   346789999999999999999999888887753332  2223344 555677889999998643

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.11  E-value=2.4e-09  Score=114.42  Aligned_cols=273  Identities=15%  Similarity=0.134  Sum_probs=187.5

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhh--HHh--hcChHHHHHHHhhcccccccCCChhHHHHHHHHH
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRS--LIS--SHNVRAILSQVFFTNINVKTASSPELAHESLALL  177 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~--~i~--~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L  177 (418)
                      +-++.|++.+.+++  ...+..|+..|..++...+..-.  .+.  -.+.++.+++++.++       +.+++..|+.+|
T Consensus       128 ~ll~~L~~~l~~~~--~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~-------~~~vR~~A~~aL  198 (852)
T 4fdd_A          128 DLLPKLCSLLDSED--YNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHS-------SPKIRSHAVACV  198 (852)
T ss_dssp             THHHHHHHHHSCSS--HHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCS-------SHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCC--HHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcCC-------CHHHHHHHHHHH
Confidence            45778888887763  33467899999998865332211  000  124567777777654       689999999999


Q ss_pred             hcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhh-hhHhhchhhhHHHHHHHhhcCCCCh
Q 014817          178 VMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQEL-RAQISNLDEIFEGVIDILKNLSSYP  256 (418)
Q Consensus       178 ~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~  256 (418)
                      ..+...... ...-.-.+.++.|...+.+++.++|..++++|..++  ....+. ...+   .++++.++.++.+.  ++
T Consensus       199 ~~~~~~~~~-~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~--~~~~~~~~~~l---~~l~~~l~~~~~~~--~~  270 (852)
T 4fdd_A          199 NQFIISRTQ-ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLL--EVRMDRLLPHM---HNIVEYMLQRTQDQ--DE  270 (852)
T ss_dssp             HTTTTTTCH-HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH--HHCHHHHGGGH---HHHHHHHHHHHTCS--SH
T ss_pred             HHHHhcccH-HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--HhCHHHHHHHH---HHHHHHHHHHccCC--cH
Confidence            987754311 111112357888999999999999999999999995  222221 1222   35888899998887  88


Q ss_pred             hhhHHHHHHHHHHccccccHHHHHH---cCchHHHHHHhc-----------C-----------CCcccHHHHHHHHHHHh
Q 014817          257 RGLKVGIKALFALCLVKQTRYKAVA---AGAAETLVDRLA-----------D-----------FDKCDAERALATVELLC  311 (418)
Q Consensus       257 ~~~~~a~~aL~~L~~~~~n~~~i~~---~G~v~~Lv~lL~-----------~-----------~~~~~~~~a~~~L~~L~  311 (418)
                      .++..|+..+.+++.....+. .+.   ...+|.++..+.           +           .+-.++..+..+|..|+
T Consensus       271 ~vr~~a~e~l~~l~~~~~~~~-~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la  349 (852)
T 4fdd_A          271 NVALEACEFWLTLAEQPICKD-VLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLA  349 (852)
T ss_dssp             HHHHHHHHHHHHHTTSTTHHH-HHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchhHHH-HHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHH
Confidence            999999999999987653332 222   245667777662           2           11235677888888887


Q ss_pred             cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHH
Q 014817          312 RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLL  391 (418)
Q Consensus       312 ~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~  391 (418)
                      ....  ..+..  ..++.+.+.+.+.+...++.|+.+|.+++.+..+.... .-.++++.|+..+.+. ++.+|..|+++
T Consensus       350 ~~~~--~~~~~--~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~-~l~~~l~~l~~~l~d~-~~~Vr~~a~~~  423 (852)
T 4fdd_A          350 NVYR--DELLP--HILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIP-YLPELIPHLIQCLSDK-KALVRSITCWT  423 (852)
T ss_dssp             HHHG--GGGHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGG-GHHHHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred             Hhcc--HHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHH-HHHHHHHHHHHHcCCC-CHHHHHHHHHH
Confidence            5332  12222  45677777777789999999999999999866543221 2256788888888666 99999999999


Q ss_pred             HHHHHhh
Q 014817          392 LKLLRDS  398 (418)
Q Consensus       392 L~~l~~~  398 (418)
                      |..++..
T Consensus       424 l~~l~~~  430 (852)
T 4fdd_A          424 LSRYAHW  430 (852)
T ss_dssp             HHHTHHH
T ss_pred             HHHHHHH
Confidence            9998875

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.09  E-value=1.3e-10  Score=84.55  Aligned_cols=56  Identities=16%  Similarity=0.376  Sum_probs=47.2

Q ss_pred             CcCCCCCCCcccCcCccccccCCeec---CCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817            8 LDLSVQIPYHFRCPISLELMCDPVTV---CTGQTYDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus         8 ~~~~~~~~~~~~Cpi~~~~~~dPv~~---~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      .....++.++..||||++.|.+|..+   +|||+|++.||.+|+.. ..+||.|+.++..
T Consensus         6 ~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~   64 (74)
T 2ep4_A            6 SGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQ   64 (74)
T ss_dssp             CSCCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSS
T ss_pred             ccccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccc
Confidence            33445677789999999999988765   99999999999999986 4689999988753

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.03  E-value=3.8e-10  Score=80.90  Aligned_cols=53  Identities=19%  Similarity=0.447  Sum_probs=44.3

Q ss_pred             CCCCCcccCcCcccccc---CCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014817           12 VQIPYHFRCPISLELMC---DPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF   65 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~~~---dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~   65 (418)
                      .+...+..||||++.|.   ++++++|||+|++.||.+|+.. ..+||.|+..+...
T Consensus         9 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A            9 TEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ   64 (69)
T ss_dssp             CSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred             CcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence            45566789999999884   5678899999999999999986 56799999887643

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.03  E-value=1.6e-10  Score=82.64  Aligned_cols=47  Identities=28%  Similarity=0.546  Sum_probs=41.8

Q ss_pred             CcccCcCccccccCC-eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           16 YHFRCPISLELMCDP-VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      .+..||||.+.+.+| ++++|||+||+.||.+|+.. ..+||.|+.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~   51 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhH
Confidence            356799999999998 67899999999999999986 578999998875

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.02  E-value=1.7e-09  Score=115.62  Aligned_cols=276  Identities=12%  Similarity=0.032  Sum_probs=185.3

Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817          104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT  183 (418)
Q Consensus       104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~  183 (418)
                      ++.+++.+++.  +..-|..|+++|..+....+..-.... .++++.|..++.++       +++++..|+.+|..++..
T Consensus       176 l~~l~~~l~~~--~~~vR~~A~~aL~~~~~~~~~~~~~~~-~~~l~~l~~~~~d~-------~~~vr~~a~~~L~~l~~~  245 (852)
T 4fdd_A          176 IPKFLQFFKHS--SPKIRSHAVACVNQFIISRTQALMLHI-DSFIENLFALAGDE-------EPEVRKNVCRALVMLLEV  245 (852)
T ss_dssp             HHHHTTTTTCS--SHHHHHHHHHHHHTTTTTTCHHHHTSH-HHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHHhcccHHHHHHH-HHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHh
Confidence            44555555544  334578899999887754332111011 25678888877665       588999999999988753


Q ss_pred             hhHH-HhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHHHHHHHhh----------c
Q 014817          184 ETEC-MEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFEGVIDILK----------N  251 (418)
Q Consensus       184 ~~~~-~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~~Lv~lL~----------~  251 (418)
                      ..+. +..+  .+.++.++..+++.+++++..|+..+..+   ......+..+.. ....++.|+..+.          .
T Consensus       246 ~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~~l---~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~  320 (852)
T 4fdd_A          246 RMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWLTL---AEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKG  320 (852)
T ss_dssp             CHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHH---TTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC
T ss_pred             CHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHHHH---hcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcC
Confidence            3221 2221  25788888888988999999999999999   554333332211 1357777877762          1


Q ss_pred             C--C--------CChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHH
Q 014817          252 L--S--------SYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFA  321 (418)
Q Consensus       252 ~--~--------~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~  321 (418)
                      +  .        .+..++..|..+|..|+.....  .++ ...++.+.+++.+.+..+++.++.+|..++........-.
T Consensus       321 d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~--~~~-~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~~~~~~  397 (852)
T 4fdd_A          321 DVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD--ELL-PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQGMIPY  397 (852)
T ss_dssp             ------------CCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHHHHGGG
T ss_pred             CcccccccccccccchHHHHHHHHHHHHHHhccH--HHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchHHHHHH
Confidence            1  0        0234688899999999865432  112 2367778888888888899999999999996543221112


Q ss_pred             hccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          322 EHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       322 ~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      . .+.++.++..+.+.++.++..|+++|.+++...+.......-.++++.|+..+..+ ++.+|+.|+++|.++.+..
T Consensus       398 l-~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~~~  473 (852)
T 4fdd_A          398 L-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEEEA  473 (852)
T ss_dssp             H-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHHh
Confidence            2 36788999999889999999999999998862111001111235778888888666 8999999999999998764

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=5.5e-11  Score=85.63  Aligned_cols=53  Identities=19%  Similarity=0.437  Sum_probs=46.5

Q ss_pred             CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014817           12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT   66 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~   66 (418)
                      ..+.+++.||||.+.+.+ ++++|||+||+.||.+|+.. ..+||.|+.++...+
T Consensus        10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           10 KQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDR-HRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCC-CSSCHHHHHCTTCCC
T ss_pred             hcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHC-cCcCCCcCCcccCCC
Confidence            466778999999999999 99999999999999999884 788999998876443

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.02  E-value=7.1e-11  Score=80.84  Aligned_cols=46  Identities=17%  Similarity=0.205  Sum_probs=40.5

Q ss_pred             CCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817           15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      .+++.||||.+.+.+|++++|||+||+.||.+|    ...||.|++.+..
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~   49 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPL   49 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeec
Confidence            457889999999999999999999999999883    5679999988753

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.01  E-value=1.9e-10  Score=78.45  Aligned_cols=47  Identities=26%  Similarity=0.453  Sum_probs=41.5

Q ss_pred             CcccCcCccccccC----CeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           16 YHFRCPISLELMCD----PVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        16 ~~~~Cpi~~~~~~d----Pv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      .++.||||++.+.+    +++++|||+|++.||.+|+... .+||.|+.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            45779999999977    8888999999999999999874 88999998764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.98  E-value=3.7e-09  Score=110.04  Aligned_cols=196  Identities=9%  Similarity=0.074  Sum_probs=145.2

Q ss_pred             HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHH-HhcCCCHHHHHHHHHHHHHHHhcc
Q 014817          148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSS-LLFHSSIEVRVNSAALIEIVLAGM  226 (418)
Q Consensus       148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-~L~~~~~~~~~~a~~~L~~L~~~s  226 (418)
                      +.++++.|.++       +++.+..|+.+|.+|+.+. ..+..+...|+|..++. +|.+.+.++|..|+++|+||+. .
T Consensus        36 i~Pll~~L~S~-------~~~~r~~A~~al~~l~~~~-~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~-~  106 (684)
T 4gmo_A           36 ILPVLKDLKSP-------DAKSRTTAAGAIANIVQDA-KCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQ-E  106 (684)
T ss_dssp             THHHHHHHSSS-------CCSHHHHHHHHHHHHTTSH-HHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHH-H
T ss_pred             HHHHHHHcCCC-------CHHHHHHHHHHHHHHHcCc-HHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHh-h
Confidence            45566778877       5788999999999999765 78888888888887655 6788899999999999999941 1


Q ss_pred             cchhhhhHhhchhhhHHHHHHHhhcCCC------------C-------hhhhHHHHHHHHHHcccc-ccHHHHHHcCchH
Q 014817          227 RSQELRAQISNLDEIFEGVIDILKNLSS------------Y-------PRGLKVGIKALFALCLVK-QTRYKAVAAGAAE  286 (418)
Q Consensus       227 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~------------~-------~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~  286 (418)
                      ...+.+..+.. .|++++|..+++....            .       .....+++.+|++||... +....+.+.|+++
T Consensus       107 ~g~d~~~~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~  185 (684)
T 4gmo_A          107 EEADFCVHLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTIL  185 (684)
T ss_dssp             SCHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHH
T ss_pred             cCchHHHHHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHH
Confidence            23577777766 6899999999864200            0       124456888999999654 4667788899999


Q ss_pred             HHHHHhcCCC---cccHHHHHHHHHHHhcC-HhHHHHHHhccCChHH--HHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          287 TLVDRLADFD---KCDAERALATVELLCRI-PAGCAEFAEHALTVPL--LVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       287 ~Lv~lL~~~~---~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~--Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      .|+.+|.+.+   .++...++.+|..|+.+ ++..+.+.++ |....  ++-.+...+...+..++++|+|+..
T Consensus       186 ~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~-~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~~  258 (684)
T 4gmo_A          186 RLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDD-QETHVYDVLLKLATGTDPRAVMACGVLHNVFT  258 (684)
T ss_dssp             HHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTC-CSSCHHHHHHHHHHSSCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhc-chHHHHHHHHHHhcCCcHHHHHHHHHHHhHhh
Confidence            9999986432   46888999999999965 5566666664 54322  2222334555567889999999853

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.98  E-value=1.6e-10  Score=94.36  Aligned_cols=55  Identities=18%  Similarity=0.375  Sum_probs=48.0

Q ss_pred             CCcccCcCccccccCC-------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817           15 PYHFRCPISLELMCDP-------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN   70 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n   70 (418)
                      ++++.||||++.|.+|       ++++|||+||+.||.+|+.. ..+||.|++.+....+.++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence            5678999999999999       99999999999999999986 5689999999876665443

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=98.97  E-value=3.6e-10  Score=85.71  Aligned_cols=50  Identities=20%  Similarity=0.512  Sum_probs=43.9

Q ss_pred             CCCcccCcCccccccC---CeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817           14 IPYHFRCPISLELMCD---PVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      ..++..||||++.|.+   +++++|||.|++.||.+|+.. ..+||.|+..+..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence            4567789999999998   888999999999999999985 6789999988753

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=98.97  E-value=3.3e-10  Score=77.25  Aligned_cols=49  Identities=18%  Similarity=0.523  Sum_probs=42.4

Q ss_pred             CCCcccCcCccccccC---CeecC-CCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           14 IPYHFRCPISLELMCD---PVTVC-TGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~d---Pv~~~-~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      +.++..||||.+.|.+   ++.++ |||.|++.||.+|+.. ..+||.|+.++.
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~   54 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV   54 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence            3456789999999999   88887 9999999999999976 678999998753

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.95  E-value=4.9e-10  Score=81.74  Aligned_cols=50  Identities=14%  Similarity=0.353  Sum_probs=43.8

Q ss_pred             CCCcccCcCccccccCC---eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817           14 IPYHFRCPISLELMCDP---VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~dP---v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      ..++..||||++.|.++   +.++|||.|++.||.+|+.. ..+||.|+..+.+
T Consensus        20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP   72 (75)
T ss_dssp             SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence            34567899999999998   78899999999999999986 5789999988754

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.91  E-value=1e-09  Score=87.08  Aligned_cols=50  Identities=12%  Similarity=0.245  Sum_probs=42.4

Q ss_pred             CCCcccCcCccccccCCe------------------ecCCCCcccHHHHHHHHHc----CCCCCCCCCCCCC
Q 014817           14 IPYHFRCPISLELMCDPV------------------TVCTGQTYDRPSIESWVAT----GNTTCPVTRSPLT   63 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~dPv------------------~~~~g~~~~r~~i~~~~~~----~~~~cp~~~~~l~   63 (418)
                      .+.+..||||++.|.+|+                  +++|||.|++.||.+|+..    ...+||.|+..+.
T Consensus        22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~   93 (114)
T 1v87_A           22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccC
Confidence            345678999999999886                  7899999999999999963    3568999998875

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.90  E-value=2.2e-08  Score=98.65  Aligned_cols=281  Identities=13%  Similarity=0.081  Sum_probs=183.6

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcC-hhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDS-DKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF  180 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l  180 (418)
                      +-++.|++.+.+++.+...+..|+..|..++... +..-.... ..+++.++.+|.+...     +..++..|+.++.++
T Consensus       128 ~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~-----~~~vr~~a~~~l~~~  201 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEP-----SNNVKLAATNALLNS  201 (462)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCC-----CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCC-----CHHHHHHHHHHHHHH
Confidence            4577888888775202234678999999988643 21111111 2467788888866521     478999999999875


Q ss_pred             CCChhHHH-hhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh-hhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817          181 PLTETECM-EIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE-LRAQISNLDEIFEGVIDILKNLSSYPRG  258 (418)
Q Consensus       181 ~~~~~~~~-~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  258 (418)
                      ...-.+.- ......-.++.+...+.+.+.+++..++.+|..++  ....+ ....+ . .++++.++..+++.  ++.+
T Consensus       202 ~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~--~~~~~~~~~~~-~-~~l~~~~~~~~~~~--~~~v  275 (462)
T 1ibr_B          202 LEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM--SLYYQYMETYM-G-PALFAITIEAMKSD--IDEV  275 (462)
T ss_dssp             TTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH--HHCGGGCTTTT-T-TTHHHHHHHHHHCS--SHHH
T ss_pred             HHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHH-H-HHHHHHHHHHHcCC--chHH
Confidence            43221111 00001113666667777889999999999999995  22222 12222 1 16788888888877  8899


Q ss_pred             hHHHHHHHHHHccccc------------------cHHHHHH---cCchHHHHHHhcCC-------CcccHHHHHHHHHHH
Q 014817          259 LKVGIKALFALCLVKQ------------------TRYKAVA---AGAAETLVDRLADF-------DKCDAERALATVELL  310 (418)
Q Consensus       259 ~~~a~~aL~~L~~~~~------------------n~~~i~~---~G~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L  310 (418)
                      +..|+..+.+++....                  ....+++   ...+|.++..|...       +..++..+..+|..|
T Consensus       276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l  355 (462)
T 1ibr_B          276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL  355 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence            9999999999875431                  0111111   33567777777532       235677888888888


Q ss_pred             hcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHhcChHHHHHHHHhhCCCHHHHHHHH
Q 014817          311 CRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASE-RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQ  389 (418)
Q Consensus       311 ~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~  389 (418)
                      +..-.  ..+..  ..++.+.+.+.+.+...++.|+.+|..++.+.. +..... -..+++.|+..+.+. ++.+|..|+
T Consensus       356 ~~~~~--~~~~~--~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~-~~~Vr~~a~  429 (462)
T 1ibr_B          356 ATCCE--DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP-SVVVRDTAA  429 (462)
T ss_dssp             HHHTT--TTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCS-CHHHHHHHH
T ss_pred             HHhcc--HHHHH--HHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCC-CHHHHHHHH
Confidence            74322  12332  456677777777899999999999999997432 211111 156889999999776 899999999


Q ss_pred             HHHHHHHhhCC
Q 014817          390 LLLKLLRDSWP  400 (418)
Q Consensus       390 ~~L~~l~~~~~  400 (418)
                      ++|..+...-.
T Consensus       430 ~~l~~~~~~~~  440 (462)
T 1ibr_B          430 WTVGRICELLP  440 (462)
T ss_dssp             HHHHHHHHHGG
T ss_pred             HHHHHHHHhcc
Confidence            99999998753

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.85  E-value=5.7e-10  Score=81.03  Aligned_cols=45  Identities=20%  Similarity=0.273  Sum_probs=40.8

Q ss_pred             CCCcccCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           14 IPYHFRCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      +.+++.|+||.+.+++|++++|||+ ||+.|+.+|     ..||.|++++.
T Consensus        21 ~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~   66 (74)
T 4ic3_A           21 LQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVIT   66 (74)
T ss_dssp             HHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCS
T ss_pred             CccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCcc
Confidence            3456899999999999999999999 999999998     67999998875

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.84  E-value=9.1e-08  Score=97.25  Aligned_cols=265  Identities=10%  Similarity=0.039  Sum_probs=175.3

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhhcCh-hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLARDSD-KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT  183 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~  183 (418)
                      +.+++.++..  +...+..|+..|..++..-. ..+.......++|.+..++.+.       ++.++..++.+|..++..
T Consensus       284 ~~l~~~l~d~--~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~-------~~~vR~~a~~~l~~l~~~  354 (588)
T 1b3u_A          284 PAFQNLMKDC--EAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA-------NQHVKSALASVIMGLSPI  354 (588)
T ss_dssp             HHHHHHHTCS--SHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS-------CHHHHHHHHTTGGGGHHH
T ss_pred             HHHHHHhCCC--cHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHHHHH
Confidence            3344444433  22335667777777665322 1111111235677888888665       588999999988887632


Q ss_pred             hhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHH
Q 014817          184 ETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGI  263 (418)
Q Consensus       184 ~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~  263 (418)
                      -.  . .......++.+..+|++.++++|..++.+|..+.   ..-. ....  ....++.|..++.+.  +..++..++
T Consensus       355 ~~--~-~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~---~~~~-~~~~--~~~~lp~l~~~~~d~--~~~vr~~~~  423 (588)
T 1b3u_A          355 LG--K-DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVN---EVIG-IRQL--SQSLLPAIVELAEDA--KWRVRLAII  423 (588)
T ss_dssp             HC--H-HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHH---HHSC-HHHH--HHHHHHHHHHHHTCS--SHHHHHHHH
T ss_pred             hh--H-hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHH---HhcC-HHHH--HHHHHHHHHHHhcCC--CchHHHHHH
Confidence            10  1 1112346788899999889999999999999884   2111 1112  135788899988877  889999999


Q ss_pred             HHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHH
Q 014817          264 KALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATE  343 (418)
Q Consensus       264 ~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~  343 (418)
                      .+|..++..-...  ......+|.++.+|.+.+..+++.++.+|..++..-.. ....  ...+|.|+.++...+..++.
T Consensus       424 ~~l~~l~~~~~~~--~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~-~~~~--~~llp~l~~~~~~~~~~~R~  498 (588)
T 1b3u_A          424 EYMPLLAGQLGVE--FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGK-EWAH--ATIIPKVLAMSGDPNYLHRM  498 (588)
T ss_dssp             HHHHHHHHHHCGG--GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCH-HHHH--HHTHHHHHHTTTCSCHHHHH
T ss_pred             HHHHHHHHHcCHH--HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCc-hhHH--HHHHHHHHHHhhCCCHHHHH
Confidence            9999987532211  11123578888888888888999999999888753221 1122  25678888777778888999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          344 YAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       344 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      .++.++..++..   .........+++.|+..++.. ++.+|..+.++|..+...
T Consensus       499 ~a~~~l~~l~~~---~~~~~~~~~~~~~l~~~l~d~-~~~Vr~~a~~~l~~l~~~  549 (588)
T 1b3u_A          499 TTLFCINVLSEV---CGQDITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPI  549 (588)
T ss_dssp             HHHHHHHHHHHH---HHHHHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHHHh---cCHHHHHHHHHHHHHhhCCCC-CchHHHHHHHHHHHHHHH
Confidence            999999888761   111223345777787777655 888999999999888764

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.81  E-value=4.3e-10  Score=81.99  Aligned_cols=47  Identities=19%  Similarity=0.243  Sum_probs=40.5

Q ss_pred             CCCCcccCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817           13 QIPYHFRCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      .+.+++.||||.+.+++|++++|||+ ||+.|+.+     ...||.|+.++..
T Consensus        21 ~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~   68 (75)
T 2ecg_A           21 RLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITF   68 (75)
T ss_dssp             HHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCC
T ss_pred             cCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhC-----CCCCccCCceecC
Confidence            34556799999999999999999999 99999964     3679999998764

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.80  E-value=2.4e-07  Score=94.12  Aligned_cols=253  Identities=12%  Similarity=0.074  Sum_probs=169.9

Q ss_pred             chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCc
Q 014817          117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADK  196 (418)
Q Consensus       117 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~  196 (418)
                      +...|..|...|..++...+..  . ....+++.+..+..++       +..++..|+.+|..+.....+.    .....
T Consensus       100 ~~~vR~~a~~~L~~l~~~~~~~--~-~~~~l~~~l~~l~~~~-------~~~~R~~a~~~l~~~~~~~~~~----~~~~l  165 (588)
T 1b3u_A          100 ETVVRDKAVESLRAISHEHSPS--D-LEAHFVPLVKRLAGGD-------WFTSRTSACGLFSVCYPRVSSA----VKAEL  165 (588)
T ss_dssp             CHHHHHHHHHHHHHHHTTSCHH--H-HHHTHHHHHHHHHTCS-------SHHHHHHHGGGHHHHTTTSCHH----HHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHCCHH--H-HHHHHHHHHHHHhcCC-------CcHHHHHHHHHHHHHHHhcCHH----HHHHH
Confidence            3345778899999988654332  1 2233566666666544       5778888888887765432111    12345


Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH
Q 014817          197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR  276 (418)
Q Consensus       197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~  276 (418)
                      ++.+..++++.++.+|..++.+|..++   ..-... .. . ...++.|..++.+.  ++.++..|+.+|..++......
T Consensus       166 ~~~l~~l~~d~~~~VR~~a~~~l~~l~---~~~~~~-~~-~-~~l~~~l~~~~~d~--~~~vr~~a~~~l~~l~~~~~~~  237 (588)
T 1b3u_A          166 RQYFRNLCSDDTPMVRRAAASKLGEFA---KVLELD-NV-K-SEIIPMFSNLASDE--QDSVRLLAVEACVNIAQLLPQE  237 (588)
T ss_dssp             HHHHHHHHTCSCHHHHHHHHHHHHHHH---HTSCHH-HH-H-HTHHHHHHHHHTCS--CHHHHTTHHHHHHHHHHHSCHH
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHH---HHhcHH-hH-H-HHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhCCHH
Confidence            788888889999999999999999994   221111 11 1 45889999999887  8899999999999988643321


Q ss_pred             HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC
Q 014817          277 YKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS  356 (418)
Q Consensus       277 ~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~  356 (418)
                        ......+|.+..++.+.+..++..++.+|..++..-.. ... . ...++.+++++...++.++..|+.+|..++..-
T Consensus       238 --~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~-~~~-~-~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  312 (588)
T 1b3u_A          238 --DLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP-EIT-K-TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENL  312 (588)
T ss_dssp             --HHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH-HHH-H-HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTS
T ss_pred             --HHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc-ccc-h-hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHh
Confidence              22345788888888887788899999999988853211 112 2 256889999998899999999999999988722


Q ss_pred             -HHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          357 -ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       357 -~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                       ++.+.......+++.+..++++. +..+|+.+++.|..+..
T Consensus       313 ~~~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~~  353 (588)
T 1b3u_A          313 SADCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLSP  353 (588)
T ss_dssp             CTTTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGHH
T ss_pred             ChhhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence             11111112234556666666544 66777776666655543

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.77  E-value=3.3e-09  Score=100.41  Aligned_cols=49  Identities=20%  Similarity=0.298  Sum_probs=44.2

Q ss_pred             cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCC
Q 014817           17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDF   65 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~   65 (418)
                      +..||||.+.+.+|++++|||+||+.||..|+......||.|+.++...
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            3689999999999999999999999999999985578899999987643

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.74  E-value=3.6e-07  Score=93.53  Aligned_cols=266  Identities=14%  Similarity=0.092  Sum_probs=177.0

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE  184 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~  184 (418)
                      +.+.+.+.+.  +..-|..|+.++.++...+++   .+.+.+.++.|..+|.+.       ++.|+..|+.+|..++...
T Consensus       124 ~~l~~~L~d~--~~~VRk~A~~al~~i~~~~p~---~~~~~~~~~~l~~lL~d~-------d~~V~~~A~~aL~~i~~~~  191 (591)
T 2vgl_B          124 EPLRKCLKDE--DPYVRKTAAVCVAKLHDINAQ---MVEDQGFLDSLRDLIADS-------NPMVVANAVAALSEISESH  191 (591)
T ss_dssp             HHHHHHSSCS--CHHHHHHHHHHHHHHHHSSCC---CHHHHHHHHHHHHTTSCS-------CHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHcCCC--ChHHHHHHHHHHHHHHhhChh---hcccccHHHHHHHHhCCC-------ChhHHHHHHHHHHHHHhhC
Confidence            3455555544  334567899999999875543   333457889999999765       6899999999999988655


Q ss_pred             hHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH
Q 014817          185 TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK  264 (418)
Q Consensus       185 ~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~  264 (418)
                      .+........+.+..|+..|...++-.+.....+|..+   ...++  ..   ...+++.+..++++.  ++.++..|++
T Consensus       192 ~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l---~~~~~--~~---~~~~l~~l~~~l~~~--~~~V~~ea~~  261 (591)
T 2vgl_B          192 PNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNY---NPKDD--RE---AQSICERVTPRLSHA--NSAVVLSAVK  261 (591)
T ss_dssp             CSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTS---CCCSH--HH---HHHHHHHHTTCSCSS--TTHHHHHHHH
T ss_pred             CCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHh---CCCCh--HH---HHHHHHHHHHHHcCC--ChHHHHHHHH
Confidence            22211111245678888888888888888888888777   43222  11   135788888888887  8899999999


Q ss_pred             HHHHHccc----cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-------------------HhHHHHHH
Q 014817          265 ALFALCLV----KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-------------------PAGCAEFA  321 (418)
Q Consensus       265 aL~~L~~~----~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-------------------~~~~~~i~  321 (418)
                      ++.++...    .+.... +-..+.+.|+.++. ++.+++..++..|..++..                   ...|....
T Consensus       262 ~i~~l~~~~~~~~~~~~~-~~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al  339 (591)
T 2vgl_B          262 VLMKFLELLPKDSDYYNM-LLKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKL  339 (591)
T ss_dssp             HHHHSCCSCCBTTBSHHH-HHHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHH
T ss_pred             HHHHHhhccCCCHHHHHH-HHHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHH
Confidence            99999742    233232 23345677776654 5677788888887777630                   01112111


Q ss_pred             h------ccCChH----HHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHH
Q 014817          322 E------HALTVP----LLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLL  391 (418)
Q Consensus       322 ~------~~g~i~----~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~  391 (418)
                      +      ....+.    .|...+...+...+..++++|..++...+...     ...++.|+.++... .+.++..+...
T Consensus       340 ~~L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~~~-----~~~v~~Ll~ll~~~-~~~v~~e~i~~  413 (591)
T 2vgl_B          340 DIMIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSA-----ERCVSTLLDLIQTK-VNYVVQEAIVV  413 (591)
T ss_dssp             HHHHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHHHH-----HHHHHHHHHHHHTC-CHHHHHHHHHH
T ss_pred             HHHHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChhHH-----HHHHHHHHHHHccc-chHHHHHHHHH
Confidence            1      112233    44445555788999999999999998655433     33778899999776 66666667777


Q ss_pred             HHHHHhhCC
Q 014817          392 LKLLRDSWP  400 (418)
Q Consensus       392 L~~l~~~~~  400 (418)
                      ++.+.+.++
T Consensus       414 l~~ii~~~p  422 (591)
T 2vgl_B          414 IRDIFRKYP  422 (591)
T ss_dssp             HHHHHHHSC
T ss_pred             HHHHHHHCc
Confidence            777766544

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.72  E-value=1.4e-08  Score=74.96  Aligned_cols=48  Identities=19%  Similarity=0.335  Sum_probs=40.0

Q ss_pred             CcccCcCccccccC--------------Ceec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817           16 YHFRCPISLELMCD--------------PVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus        16 ~~~~Cpi~~~~~~d--------------Pv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      ++-.|+||++.|.+              ++++ +|||.|.+.||.+|+.. +.+||.|++++..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcch
Confidence            45679999999988              4455 59999999999999986 5789999988753

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.71  E-value=2.8e-09  Score=86.88  Aligned_cols=55  Identities=18%  Similarity=0.375  Sum_probs=48.1

Q ss_pred             CCcccCcCccccccCC-------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817           15 PYHFRCPISLELMCDP-------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN   70 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n   70 (418)
                      ++.+.||||++.+.+|       ++++|||+||..||.+|++. ..+||.|+.++...++.++
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~  131 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI  131 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence            4567899999999998       88999999999999999986 6789999999887766554

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.71  E-value=9.3e-08  Score=97.90  Aligned_cols=260  Identities=10%  Similarity=0.040  Sum_probs=176.6

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      ....+++.+++.+  ...+.-+.-.+..++..+++..     .-++..+.+-|.++       ++.++..|+.+|+++..
T Consensus        50 ~~~~vi~l~~s~~--~~~Krl~yl~l~~~~~~~~e~~-----~l~~n~l~kdL~~~-------n~~ir~~AL~~L~~i~~  115 (591)
T 2vgl_B           50 LFPDVVNCMQTDN--LELKKLVYLYLMNYAKSQPDMA-----IMAVNSFVKDCEDP-------NPLIRALAVRTMGCIRV  115 (591)
T ss_dssp             GHHHHHHTTSSSC--HHHHHHHHHHHHHHHHHSHHHH-----HTTHHHHGGGSSSS-------SHHHHHHHHHHHHTCCS
T ss_pred             HHHHHHHHhCCCC--HHHHHHHHHHHHHHcccCchHH-----HHHHHHHHHHcCCC-------CHHHHHHHHHHHHcCCh
Confidence            3566777665543  3333444555556655443322     11345566566555       68899999999999863


Q ss_pred             ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817          183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG  262 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a  262 (418)
                      .  +.-     ...++.+.+.|.+.++.+|..|+.+|..+.  ..+++   .+ ...++++.|..+|.+.  ++.++.+|
T Consensus       116 ~--~~~-----~~l~~~l~~~L~d~~~~VRk~A~~al~~i~--~~~p~---~~-~~~~~~~~l~~lL~d~--d~~V~~~A  180 (591)
T 2vgl_B          116 D--KIT-----EYLCEPLRKCLKDEDPYVRKTAAVCVAKLH--DINAQ---MV-EDQGFLDSLRDLIADS--NPMVVANA  180 (591)
T ss_dssp             G--GGH-----HHHHHHHHHHSSCSCHHHHHHHHHHHHHHH--HSSCC---CH-HHHHHHHHHHHTTSCS--CHHHHHHH
T ss_pred             H--HHH-----HHHHHHHHHHcCCCChHHHHHHHHHHHHHH--hhChh---hc-ccccHHHHHHHHhCCC--ChhHHHHH
Confidence            2  222     234678999999999999999999999994  22222   23 2257899999999987  89999999


Q ss_pred             HHHHHHHccccccH-HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH-hHHHHHHhccCChHHHHHHHhcCChH
Q 014817          263 IKALFALCLVKQTR-YKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP-AGCAEFAEHALTVPLLVKTILKISDR  340 (418)
Q Consensus       263 ~~aL~~L~~~~~n~-~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~~~~~~  340 (418)
                      +.+|..++...... ..-...+.+..|+..+.+.++-.+...+.+|..++..+ ....      ..++.+...+.+.++.
T Consensus       181 ~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~------~~l~~l~~~l~~~~~~  254 (591)
T 2vgl_B          181 VAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQ------SICERVTPRLSHANSA  254 (591)
T ss_dssp             HHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHH------HHHHHHTTCSCSSTTH
T ss_pred             HHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHH------HHHHHHHHHHcCCChH
Confidence            99999999765422 01112345677788777777777777888887777432 2222      3456677777778999


Q ss_pred             HHHHHHHHHHHHhcC---CHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          341 ATEYAAGALAALCSA---SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       341 ~~~~A~~~L~~l~~~---~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      +...|++++..+...   +++..+.+ -..+.+.|+.++ +. ++.+|..|...|..+....+
T Consensus       255 V~~ea~~~i~~l~~~~~~~~~~~~~~-~~~~~~~L~~L~-~~-d~~vr~~aL~~l~~i~~~~p  314 (591)
T 2vgl_B          255 VVLSAVKVLMKFLELLPKDSDYYNML-LKKLAPPLVTLL-SG-EPEVQYVALRNINLIVQKRP  314 (591)
T ss_dssp             HHHHHHHHHHHSCCSCCBTTBSHHHH-HHHTHHHHHHHT-TS-CHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHHhhccCCCHHHHHHH-HHHHHHHHHHHh-cC-CccHHHHHHHHHHHHHHhCh
Confidence            999999999998742   33333322 234557777655 44 89999999999999988654

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.64  E-value=4.4e-09  Score=80.24  Aligned_cols=67  Identities=12%  Similarity=0.139  Sum_probs=47.6

Q ss_pred             CcccCcCccccccCCeec---CCCCcccHHHHHHHHHc----C---CCCCCC--CCCC--CCCCCCcccHHHHHHHHHHH
Q 014817           16 YHFRCPISLELMCDPVTV---CTGQTYDRPSIESWVAT----G---NTTCPV--TRSP--LTDFTLIPNHTLRRLIQDWC   81 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dPv~~---~~g~~~~r~~i~~~~~~----~---~~~cp~--~~~~--l~~~~l~~n~~L~~~i~~~~   81 (418)
                      +.+.||||.+.+.+|+++   +|||+||+.|+..|+..    +   ...||.  |+..  +.+..+. +....+++++|.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~~~~~~~i~-~ll~~~~~~ky~   82 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQGHLQENEIE-CMVAAEIMQRYK   82 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCCEECHHHHH-HHSCHHHHHHHH
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCCCccCHHHHH-HHCCHHHHHHHH
Confidence            578899999999999875   69999999999999863    3   236999  9877  4432221 222245556665


Q ss_pred             Hh
Q 014817           82 VA   83 (418)
Q Consensus        82 ~~   83 (418)
                      ..
T Consensus        83 ~~   84 (94)
T 1wim_A           83 KL   84 (94)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.60  E-value=2.1e-08  Score=70.36  Aligned_cols=48  Identities=23%  Similarity=0.237  Sum_probs=42.4

Q ss_pred             CCcccCcCccccccCCeec--CCCCc-ccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           15 PYHFRCPISLELMCDPVTV--CTGQT-YDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~dPv~~--~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      +++..|+||.+-.+|++++  +|||. ||..|+.+|+.. ...||.|++++.
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence            3456899999999999988  99999 899999999975 578999998874

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.59  E-value=5.1e-06  Score=85.38  Aligned_cols=253  Identities=13%  Similarity=0.050  Sum_probs=169.8

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE  184 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~  184 (418)
                      +.+.+.|.+.+  ..-|..|+.++.++...+++.-     .+.++.+..+|.+.       ++.|+..|+.+|..++..+
T Consensus       145 ~~l~~~L~~~~--~~VRk~A~~al~~l~~~~p~~v-----~~~~~~l~~lL~D~-------d~~V~~~Al~~L~~i~~~~  210 (618)
T 1w63_A          145 GEVEKLLKTSN--SYLRKKAALCAVHVIRKVPELM-----EMFLPATKNLLNEK-------NHGVLHTSVVLLTEMCERS  210 (618)
T ss_dssp             HHHHHHHHSCC--HHHHHHHHHHHHHHHHHCGGGG-----GGGGGGTTTSTTCC-------CHHHHHHHHHHHHHHCCSH
T ss_pred             HHHHHHHcCCC--HHHHHHHHHHHHHHHHHChHHH-----HHHHHHHHHHhCCC-------CHhHHHHHHHHHHHHHHhC
Confidence            44445555443  2345667777777766554322     14566666677654       6788899999888887665


Q ss_pred             hHHHhhcccCCchHHHHHHhcC---------------CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHh
Q 014817          185 TECMEIASDADKITSLSSLLFH---------------SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDIL  249 (418)
Q Consensus       185 ~~~~~~i~~~g~i~~Lv~~L~~---------------~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL  249 (418)
                      .+....+  ...++.++.+|.+               .++-.+...+.+|..+   ...+..   ..  ...++.|..++
T Consensus       211 ~~~~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l---~~~~~~---~~--~~~~~~L~~l~  280 (618)
T 1w63_A          211 PDMLAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRIL---GRNDDD---SS--EAMNDILAQVA  280 (618)
T ss_dssp             HHHHHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHH---TTTCHH---HH--HTTHHHHHHHH
T ss_pred             hHHHHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHh---CCCCHH---HH--HHHHHHHHHHH
Confidence            3322222  2567888887753               3788888889999998   443221   11  22455566665


Q ss_pred             hcCC----CChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccC
Q 014817          250 KNLS----SYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHAL  325 (418)
Q Consensus       250 ~~~~----~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g  325 (418)
                      ....    .+..+...|++++.++.....    +. ..+++.|..+|.+.+.+++..++.+|..++....   .++.  .
T Consensus       281 ~~~~~~~~~~~aV~~ea~~~i~~l~~~~~----l~-~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~--~  350 (618)
T 1w63_A          281 TNTETSKNVGNAILYETVLTIMDIKSESG----LR-VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQ--R  350 (618)
T ss_dssp             HTSCCSSTHHHHHHHHHHHHHHHSCCCHH----HH-HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHG--G
T ss_pred             hccccccchHHHHHHHHHHHHHhcCCCHH----HH-HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHH--H
Confidence            4210    034788888999988755322    22 2467889999998889999999999998885322   2232  3


Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ....++.++.+.+..++..|+.+|..++..+.  ...     ++..|+..+... +...|+.+...+..++..+
T Consensus       351 ~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~n--v~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~k~  416 (618)
T 1w63_A          351 HRSTIVDCLKDLDVSIKRRAMELSFALVNGNN--IRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAEKY  416 (618)
T ss_dssp             GHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSS--THH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHccCCChhHHHHHHHHHHHHccccc--HHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHh
Confidence            46778888888899999999999999997321  122     457788888776 8899999999999998864

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.59  E-value=5.4e-06  Score=88.36  Aligned_cols=280  Identities=13%  Similarity=0.083  Sum_probs=180.4

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhh--cChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISS--HNVRAILSQVFFTNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      +-++.+++.+.+++.+...+..|+..|..++..-..  +.+..  ..+++.+...+.++..     +.+++..|+.+|..
T Consensus       128 ~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~--~~~~~~~~~ll~~l~~~l~~~~~-----~~~vr~~a~~~l~~  200 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP--EQLQDKSNEILTAIIQGMRKEEP-----SNNVKLAATNALLN  200 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH--HHHGGGHHHHHHHHHHHHSTTCS-----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCH--hhHHhHHHHHHHHHHHhhcCCCC-----CHHHHHHHHHHHHH
Confidence            356778888876520223467789999988864211  11111  3456667777765421     47889999999887


Q ss_pred             CCCChhHH-HhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch-hhhhHhhchhhhHHHHHHHhhcCCCChh
Q 014817          180 FPLTETEC-MEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ-ELRAQISNLDEIFEGVIDILKNLSSYPR  257 (418)
Q Consensus       180 l~~~~~~~-~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  257 (418)
                      +...-... .........++.+...+.+.+.+++..++.+|..++  .... .....+ . ..+++.++..+.+.  ++.
T Consensus       201 ~~~~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~--~~~~~~~~~~~-~-~~l~~~~~~~~~~~--~~~  274 (876)
T 1qgr_A          201 SLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM--SLYYQYMETYM-G-PALFAITIEAMKSD--IDE  274 (876)
T ss_dssp             HGGGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH--HHSGGGCHHHH-T-TTHHHHHHHHHTCS--SHH
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH--HHhHHHHHHHH-H-HHHHHHHHHHhcCC--chH
Confidence            65321111 111111125777777888888999999999999995  2222 222223 1 25788888888776  788


Q ss_pred             hhHHHHHHHHHHccccc---------------------cHHHHHHcCchHHHHHHhcC-------CCcccHHHHHHHHHH
Q 014817          258 GLKVGIKALFALCLVKQ---------------------TRYKAVAAGAAETLVDRLAD-------FDKCDAERALATVEL  309 (418)
Q Consensus       258 ~~~~a~~aL~~L~~~~~---------------------n~~~i~~~G~v~~Lv~lL~~-------~~~~~~~~a~~~L~~  309 (418)
                      ++..|+..+.+++....                     ....-.-...++.+++.|..       .+..++..+..+|..
T Consensus       275 v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~  354 (876)
T 1qgr_A          275 VALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLML  354 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHH
Confidence            99999999998875421                     00000013357777787753       234567788888888


Q ss_pred             HhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH-HHHHHHHhcChHHHHHHHHhhCCCHHHHHHH
Q 014817          310 LCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASE-RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKA  388 (418)
Q Consensus       310 L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~-~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A  388 (418)
                      ++..-.  ..+..  ..++.+...+.+.+..+++.|+.+|..++.+.. +..... -..+++.|+..+.+. ++.+|..|
T Consensus       355 l~~~~~--~~~~~--~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~-~~~vr~~a  428 (876)
T 1qgr_A          355 LATCCE--DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDP-SVVVRDTA  428 (876)
T ss_dssp             HHHHHG--GGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred             HHHHCc--HhhHH--HHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCC-CHHHHHHH
Confidence            875322  12222  455666666677889999999999999998443 322222 245788888888666 89999999


Q ss_pred             HHHHHHHHhhCC
Q 014817          389 QLLLKLLRDSWP  400 (418)
Q Consensus       389 ~~~L~~l~~~~~  400 (418)
                      +++|..+.....
T Consensus       429 ~~~l~~~~~~~~  440 (876)
T 1qgr_A          429 AWTVGRICELLP  440 (876)
T ss_dssp             HHHHHHHHHHCG
T ss_pred             HHHHHHHHHhCc
Confidence            999999998743

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.56  E-value=2.7e-08  Score=69.54  Aligned_cols=47  Identities=13%  Similarity=0.198  Sum_probs=41.9

Q ss_pred             CcccCcCccccccCCeec--CCCCc-ccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           16 YHFRCPISLELMCDPVTV--CTGQT-YDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dPv~~--~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      .+..|+||.+-.+|++++  +|||. ||+.|+.+|+.. ...||.|++++.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence            356799999999999988  99998 999999999876 578999998874

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.56  E-value=3.2e-06  Score=90.12  Aligned_cols=277  Identities=12%  Similarity=0.048  Sum_probs=175.6

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhh-hHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNR-SLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT  183 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~  183 (418)
                      +.+++.+...+.+...+..|++.+..++..-..+- .......+++.+...+.+.       +.+++..++.+|..+...
T Consensus       175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~il~~l~~~~~~~-------~~~vr~~a~~~l~~l~~~  247 (876)
T 1qgr_A          175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP-------DTRVRVAALQNLVKIMSL  247 (876)
T ss_dssp             HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS-------SHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHHHHHHHH
Confidence            34455554442223446788888888765322211 1111112566666666544       578999999988877642


Q ss_pred             hhHH-HhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhh----------------h---hHhh-chhhhH
Q 014817          184 ETEC-MEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQEL----------------R---AQIS-NLDEIF  242 (418)
Q Consensus       184 ~~~~-~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~----------------~---~~i~-~~~g~i  242 (418)
                      .... ... .....++.++..+.+.+++++..++..+..++   .....                +   ..+. ....++
T Consensus       248 ~~~~~~~~-~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  323 (876)
T 1qgr_A          248 YYQYMETY-MGPALFAITIEAMKSDIDEVALQGIEFWSNVC---DEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV  323 (876)
T ss_dssp             SGGGCHHH-HTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHH
T ss_pred             hHHHHHHH-HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH---HHHHhHhhhhccccccCCCccchhHHHHHHHHHHHh
Confidence            2111 111 12367888888888888999999999999884   32100                0   0000 003467


Q ss_pred             HHHHHHhhcC-----CCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH--h
Q 014817          243 EGVIDILKNL-----SSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIP--A  315 (418)
Q Consensus       243 ~~Lv~lL~~~-----~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~--~  315 (418)
                      +.++..+...     +.+..++..|..+|..++.....  .++ ..+++.+...+.+.+..+++.++.+|..++...  +
T Consensus       324 ~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~-~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~  400 (876)
T 1qgr_A          324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPS  400 (876)
T ss_dssp             HHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGH-HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH
T ss_pred             HHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhH-HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHH
Confidence            7788887532     11457888999999999765331  112 235666677777777888999999999999642  3


Q ss_pred             HHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHH-HHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817          316 GCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQ-RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL  394 (418)
Q Consensus       316 ~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~-~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  394 (418)
                      .......  ..++.++..+.+.++.++..|+++|.+++...+... ..-.-..+++.|+..+.+  +++++..|+++|..
T Consensus       401 ~~~~~~~--~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~--~~~v~~~a~~al~~  476 (876)
T 1qgr_A          401 QLKPLVI--QAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA--EPRVASNVCWAFSS  476 (876)
T ss_dssp             HHHHHHH--HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS--CHHHHHHHHHHHHH
T ss_pred             HHHHHHH--HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHH
Confidence            2333333  578899999988999999999999999997322100 000012356677777744  48889999999999


Q ss_pred             HHhhC
Q 014817          395 LRDSW  399 (418)
Q Consensus       395 l~~~~  399 (418)
                      +....
T Consensus       477 l~~~~  481 (876)
T 1qgr_A          477 LAEAA  481 (876)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            98763

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.51  E-value=2.5e-06  Score=90.81  Aligned_cols=261  Identities=12%  Similarity=0.085  Sum_probs=167.0

Q ss_pred             chhhhHHHHHHHHHhhhcCh-hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhc----
Q 014817          117 TYGSRLSALRRLRGLARDSD-KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIA----  191 (418)
Q Consensus       117 ~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i----  191 (418)
                      +...+..|+..+..++.... ..-.... ..+++.|+..+.+.       ++.++..++++|..++..-   ...+    
T Consensus       382 ~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~-------~~~vr~~a~~~l~~l~~~~---~~~~~~~~  450 (861)
T 2bpt_A          382 NWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ-------SLQVKETTAWCIGRIADSV---AESIDPQQ  450 (861)
T ss_dssp             SHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS-------CHHHHHHHHHHHHHHHHHH---GGGSCTTT
T ss_pred             ChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCC-------cHHHHHHHHHHHHHHHHHh---hhhcCCHH
Confidence            44567889999999886532 1111112 24678888888665       6889999999888776322   1111    


Q ss_pred             ccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc---chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHH
Q 014817          192 SDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR---SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFA  268 (418)
Q Consensus       192 ~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~---~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~  268 (418)
                      .-...++.|+..|++. +.++..++++|.+++....   .+.....+   ..+++.|+.++.+...++.++..++.+|..
T Consensus       451 ~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~---~~il~~L~~~l~~~d~~~~vr~~a~~al~~  526 (861)
T 2bpt_A          451 HLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFY---PALVDGLIGAANRIDNEFNARASAFSALTT  526 (861)
T ss_dssp             THHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGH---HHHHHHHHHHHTCSCCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHH---HHHHHHHHHHHhCcCcchHHHHHHHHHHHH
Confidence            1234678888888765 8999999999999942111   01122222   357889999998652147889999999999


Q ss_pred             Hcccccc-HHHHHHcCchHHHHHHhcCC---------------CcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHH
Q 014817          269 LCLVKQT-RYKAVAAGAAETLVDRLADF---------------DKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLV  331 (418)
Q Consensus       269 L~~~~~n-~~~i~~~G~v~~Lv~lL~~~---------------~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv  331 (418)
                      +...... ....+. ..+|.+++.|...               ...++..++.+|..++.. +.......  ...++.++
T Consensus       527 l~~~~~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~  603 (861)
T 2bpt_A          527 MVEYATDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFF  603 (861)
T ss_dssp             HHHHCCGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHH
T ss_pred             HHHHcchhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHH
Confidence            9865432 222222 3677777777531               234556788888877732 11111111  13566777


Q ss_pred             HHHhcCCh-HHHHHHHHHHHHHhcCC-HHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          332 KTILKISD-RATEYAAGALAALCSAS-ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       332 ~~l~~~~~-~~~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +.+...+. .+++.++.++..++... ......+  ..+++.|+..+... +..++..|..++..+.+.
T Consensus       604 ~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~~  669 (861)
T 2bpt_A          604 RLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQV-DSPVSITAVGFIADISNS  669 (861)
T ss_dssp             HHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCT-TSHHHHHHHHHHHHHHHH
T ss_pred             HHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHH
Confidence            77777666 88999999999888621 1122111  23778888888555 778999999998888765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.48  E-value=1.5e-05  Score=81.90  Aligned_cols=256  Identities=9%  Similarity=-0.021  Sum_probs=166.4

Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817          104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT  183 (418)
Q Consensus       104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~  183 (418)
                      +..+-+.+++++.  ..+..++..|-.+.......      ..+....++++.+.       +.+.+....-.+..++..
T Consensus        36 ~~~ir~~l~~~~~--~~k~~~l~kli~~~~~G~d~------~~~~~~vik~~~s~-------~~~~Krl~Yl~~~~~~~~  100 (618)
T 1w63_A           36 CAAIRSSFREEDN--TYRCRNVAKLLYMHMLGYPA------HFGQLECLKLIASQ-------KFTDKRIGYLGAMLLLDE  100 (618)
T ss_dssp             HHHHHHHHTTTCT--TTHHHHHHHHHHHHHTTCCC------GGGHHHHHHHHHSS-------SHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHhhCCCH--HHHHHHHHHHHHHHHcCCCC------cchHHHHHHHHcCC-------chHHHHHHHHHHHHHhCC
Confidence            3445556655532  33556666666543322111      23456666777765       466666666666666655


Q ss_pred             hhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHH
Q 014817          184 ETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGI  263 (418)
Q Consensus       184 ~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~  263 (418)
                      +++...     -++..|.+-|++.++.+|..|+.+|.++   .. +    .+.  ..+++.+..+|.+.  ++.+++.|+
T Consensus       101 ~~e~~~-----l~in~l~kDL~~~n~~vr~lAL~~L~~i---~~-~----~~~--~~l~~~l~~~L~~~--~~~VRk~A~  163 (618)
T 1w63_A          101 RQDVHL-----LMTNCIKNDLNHSTQFVQGLALCTLGCM---GS-S----EMC--RDLAGEVEKLLKTS--NSYLRKKAA  163 (618)
T ss_dssp             CHHHHH-----HHHHHHHHHHSCSSSHHHHHHHHHHHHH---CC-H----HHH--HHHHHHHHHHHHSC--CHHHHHHHH
T ss_pred             CcHHHH-----HHHHHHHHhcCCCCHhHHHHHHHHHHhc---CC-H----HHH--HHHHHHHHHHHcCC--CHHHHHHHH
Confidence            433222     2467788888899999999999999999   42 2    232  34788899999988  899999999


Q ss_pred             HHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-------
Q 014817          264 KALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-------  336 (418)
Q Consensus       264 ~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-------  336 (418)
                      .++.++......   ++ .+.++.+..+|.+.+..++..|+.+|..++..+........  ..++.++++|..       
T Consensus       164 ~al~~l~~~~p~---~v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~~--~~v~~l~~~L~~~~~~~~~  237 (618)
T 1w63_A          164 LCAVHVIRKVPE---LM-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHFR--KLVPQLVRILKNLIMSGYS  237 (618)
T ss_dssp             HHHHHHHHHCGG---GG-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHHH--TTHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHHHChH---HH-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHHH--HHHHHHHHHHHHHHcCCCC
Confidence            999999864332   12 26778888888888889999999999999876543222222  567778777653       


Q ss_pred             --------CChHHHHHHHHHHHHHhcCCHHHHHH-------HH------------------------------hcChHHH
Q 014817          337 --------ISDRATEYAAGALAALCSASERCQRD-------AV------------------------------SAGVLTQ  371 (418)
Q Consensus       337 --------~~~~~~~~A~~~L~~l~~~~~~~~~~-------~~------------------------------~~g~i~~  371 (418)
                              .++-.|-..+.+|..++..+++....       +.                              ...++..
T Consensus       238 ~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~~a~~~  317 (618)
T 1w63_A          238 PEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINI  317 (618)
T ss_dssp             TTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             ccccccCCCCChHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence                    36777777777777777655432111       00                              0124566


Q ss_pred             HHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          372 LLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       372 L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      |..++.+. ++.+|..|...|..+...
T Consensus       318 L~~~L~~~-d~~vr~~aL~~L~~i~~~  343 (618)
T 1w63_A          318 LGRFLLNN-DKNIRYVALTSLLKTVQT  343 (618)
T ss_dssp             HHHHHTCS-STTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCC-CCchHHHHHHHHHHHHhh
Confidence            66666555 677777777777776654

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.48  E-value=9.6e-08  Score=74.00  Aligned_cols=46  Identities=17%  Similarity=0.356  Sum_probs=39.7

Q ss_pred             cccCcCccccccCC------------------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           17 HFRCPISLELMCDP------------------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        17 ~~~Cpi~~~~~~dP------------------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      +-.|+||++.|.+|                  ++++|||.|.+.||.+|+.. +.+||.|+..+.
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            34799999999987                  34699999999999999986 788999998754

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.47  E-value=2.6e-08  Score=73.02  Aligned_cols=47  Identities=19%  Similarity=0.294  Sum_probs=40.7

Q ss_pred             CCCCcccCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817           13 QIPYHFRCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      .+.++..|+||.+.+++||+++|||. ||+.|+.+|+     .||.|+.++..
T Consensus        14 ~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~   61 (79)
T 2yho_A           14 KLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEH   61 (79)
T ss_dssp             HHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCE
T ss_pred             cCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhC
Confidence            34456789999999999999999999 9999998873     79999988753

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.46  E-value=1.9e-07  Score=66.22  Aligned_cols=49  Identities=12%  Similarity=0.122  Sum_probs=41.6

Q ss_pred             CCCCCCcccCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817           11 SVQIPYHFRCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus        11 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      +..-.++..|+||++..+++++++|||. ||..|+..     ...||.|++++..
T Consensus         9 e~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A            9 EPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CCSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             cccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            3444557899999999999999999999 99999984     4779999988753

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.46  E-value=8.7e-06  Score=79.86  Aligned_cols=237  Identities=13%  Similarity=0.066  Sum_probs=150.8

Q ss_pred             ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh-hHHHhhcccCCchHHHHHHhcCC--CHHHHHHHHHHHHHH
Q 014817          146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE-TECMEIASDADKITSLSSLLFHS--SIEVRVNSAALIEIV  222 (418)
Q Consensus       146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~a~~~L~~L  222 (418)
                      +.++.|+..+.++..     ++.+++.|+.+|..++... .+.-... ....++.++..|.+.  +..+|..|++++.++
T Consensus       128 ~ll~~L~~~l~~~~~-----~~~~r~~al~~l~~l~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~  201 (462)
T 1ibr_B          128 ELIPQLVANVTNPNS-----TEHMKESTLEAIGYICQDIDPEQLQDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNS  201 (462)
T ss_dssp             THHHHHHHHHHCTTC-----CHHHHHHHHHHHHHHHHHSCGGGTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCCC-----CHHHHHHHHHHHHHHHHhCCchhhHhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHH
Confidence            467777777765410     3678899999888776321 0110011 134678888999887  799999999999997


Q ss_pred             Hhcccchhhhh-HhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH-HHHHHcCchHHHHHHhcCCCcccH
Q 014817          223 LAGMRSQELRA-QISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR-YKAVAAGAAETLVDRLADFDKCDA  300 (418)
Q Consensus       223 ~~~s~~~~~~~-~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~-~~i~~~G~v~~Lv~lL~~~~~~~~  300 (418)
                      +  ....+.-. .... .-+++.|...+.+.  ++.++..++.+|..++...... ...+..+.++.++..+.+.+..++
T Consensus       202 ~--~~~~~~~~~~~~~-~~l~~~l~~~~~~~--~~~vr~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~  276 (462)
T 1ibr_B          202 L--EFTKANFDKESER-HFIMQVVCEATQCP--DTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVA  276 (462)
T ss_dssp             T--TTTHHHHTSHHHH-HHHHHHHHHHTTCS--SHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCSSHHHH
T ss_pred             H--HHHHHhhhhhHHH-HHHHHHHHHhcCCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHH
Confidence            3  22121111 1101 12466677777666  7899999999999998643211 111122677788888888788889


Q ss_pred             HHHHHHHHHHhcCHhHHHH------------------HHh--ccCChHHHHHHHhc-------CChHHHHHHHHHHHHHh
Q 014817          301 ERALATVELLCRIPAGCAE------------------FAE--HALTVPLLVKTILK-------ISDRATEYAAGALAALC  353 (418)
Q Consensus       301 ~~a~~~L~~L~~~~~~~~~------------------i~~--~~g~i~~Lv~~l~~-------~~~~~~~~A~~~L~~l~  353 (418)
                      ..++.++..++........                  +..  ....+|.+++.|..       .+...+..|..+|..++
T Consensus       277 ~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~  356 (462)
T 1ibr_B          277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA  356 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHH
Confidence            9999999888854311111                  110  01345566666643       23467889999999988


Q ss_pred             cCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          354 SASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       354 ~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      ..-++   .+. ..+++.+...+++. +...|+.|..+|..+...
T Consensus       357 ~~~~~---~~~-~~~~~~l~~~l~~~-~~~~r~aal~~l~~l~~~  396 (462)
T 1ibr_B          357 TCCED---DIV-PHVLPFIKEHIKNP-DWRYRDAAVMAFGCILEG  396 (462)
T ss_dssp             HHTTT---THH-HHHHHHHHHHTTCS-SHHHHHHHHHHHHHTSSS
T ss_pred             HhccH---HHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhcC
Confidence            72221   111 23566666677665 899999999999999863

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.37  E-value=6.1e-08  Score=91.33  Aligned_cols=44  Identities=16%  Similarity=0.301  Sum_probs=40.2

Q ss_pred             CCcccCcCccccccCCeecCCCCc-ccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           15 PYHFRCPISLELMCDPVTVCTGQT-YDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      .+++.||||.+.+.+||+++|||+ ||+.|+..|     ..||.|+.++.
T Consensus       293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~  337 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIK  337 (345)
T ss_dssp             HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCC
T ss_pred             cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCcc
Confidence            456899999999999999999999 999999988     67999998875

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.36  E-value=9.5e-07  Score=98.09  Aligned_cols=274  Identities=11%  Similarity=0.068  Sum_probs=182.7

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF  180 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l  180 (418)
                      +..+..+++.+.+++.+  .|..|...|.+....+...-..-....+++.|++.|.+.       +++++..|+.+|..+
T Consensus         5 ~~~l~~lL~~l~s~d~~--~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~-------~~~vR~~A~~~L~~l   75 (1230)
T 1u6g_C            5 SYHISNLLEKMTSSDKD--FRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-------NGEVQNLAVKCLGPL   75 (1230)
T ss_dssp             CHHHHHHHHHTTCSSHH--HHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-------SHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHhcCCCCHh--HHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCC-------CHHHHHHHHHHHHHH
Confidence            35688899999887543  467888888877654311000011124678888888754       689999999999887


Q ss_pred             CCChhH-HHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh-----hhhHhhchhhhHHHHHHHhhc-CC
Q 014817          181 PLTETE-CMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE-----LRAQISNLDEIFEGVIDILKN-LS  253 (418)
Q Consensus       181 ~~~~~~-~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~-----~~~~i~~~~g~i~~Lv~lL~~-~~  253 (418)
                      +....+ ..     ...++.|+..|.+.+..+|..++.+|..++. .....     .....  ...+++.|+..+.+ . 
T Consensus        76 ~~~~~~~~~-----~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~-~l~~~~~~~~~~~~~--~~~llp~L~~~l~~~~-  146 (1230)
T 1u6g_C           76 VSKVKEYQV-----ETIVDTLCTNMLSDKEQLRDISSIGLKTVIG-ELPPASSGSALAANV--CKKITGRLTSAIAKQE-  146 (1230)
T ss_dssp             HTTSCHHHH-----HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHH-HCC-----CCTHHHH--HHHHHHHHHHHHSCCS-
T ss_pred             HHhCCHHHH-----HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH-hCCCcccccchHHHH--HHHHHHHHHHHHcCCC-
Confidence            643212 12     2357788888888888999999999999952 11111     01111  24589999999984 5 


Q ss_pred             CChhhhHHHHHHHHHHcccccc-HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHH
Q 014817          254 SYPRGLKVGIKALFALCLVKQT-RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVK  332 (418)
Q Consensus       254 ~~~~~~~~a~~aL~~L~~~~~n-~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~  332 (418)
                       ++.++..|+.+|..++..... -.. .-...++.|+..|.+.+..++..++.+|..++.....  .+.  ...++.+++
T Consensus       147 -~~~~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~  220 (1230)
T 1u6g_C          147 -DVSVQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLS  220 (1230)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHH
T ss_pred             -chHHHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHH
Confidence             789999999999999843211 000 0133566777777777788999999999999864322  122  256888888


Q ss_pred             HHhcC-ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          333 TILKI-SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       333 ~l~~~-~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      .+... +...+..++.++..++...+..... .-..+++.++..++.. ++.+|+.|..++..+.....
T Consensus       221 ~L~~~~~~~~r~~a~~~l~~l~~~~~~~~~~-~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~~~~  287 (1230)
T 1u6g_C          221 ELSKNDSMSTTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRCP  287 (1230)
T ss_dssp             HHHHTCSSCSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCTT
T ss_pred             HhccCCchhHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHCh
Confidence            88764 3456778888888887622221000 1146888888888765 88899999999998887643

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.34  E-value=1.9e-05  Score=83.99  Aligned_cols=278  Identities=13%  Similarity=0.127  Sum_probs=174.7

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcCh-hhh--hHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSD-KNR--SLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV  178 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~-~~~--~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~  178 (418)
                      +-++.|++.+.++. +...+..|+..+..++..-. ..+  ... ...+++.+...+.+...     +.+++..|+.+|.
T Consensus       134 ~ll~~L~~~l~~~~-~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~-----~~~vr~~al~~l~  206 (861)
T 2bpt_A          134 ELMKIMVDNTGAEQ-PENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTET-----SKAVRLAALNALA  206 (861)
T ss_dssp             HHHHHHHHHTSTTS-CHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTCC-----CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCCC-----CHHHHHHHHHHHH
Confidence            45677777776641 23346778888888876422 111  001 12356666777765421     4789999999988


Q ss_pred             cCCCC-hhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh-hhhHhhchhhhHHHHHHHhhcCCCCh
Q 014817          179 MFPLT-ETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE-LRAQISNLDEIFEGVIDILKNLSSYP  256 (418)
Q Consensus       179 ~l~~~-~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~  256 (418)
                      .+... .............++.|...+.+++.++|..++.+|..++  ....+ ....+.  ..+++.+...+.+.  +.
T Consensus       207 ~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~--~~~~~~~~~~l~--~~l~~~~~~~~~~~--~~  280 (861)
T 2bpt_A          207 DSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIM--SKYYTFMKPYME--QALYALTIATMKSP--ND  280 (861)
T ss_dssp             HHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH--HHHGGGCHHHHH--HTHHHHHHHHTTCS--SH
T ss_pred             HHHHHHHHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHH--HHHHHHHHHHHcCC--cH
Confidence            65311 1010000001235677777888889999999999999995  22221 112221  14677777777776  78


Q ss_pred             hhhHHHHHHHHHHcccccc------------------HHHHHHcCchHHHHHHhcCC-------CcccHHHHHHHHHHHh
Q 014817          257 RGLKVGIKALFALCLVKQT------------------RYKAVAAGAAETLVDRLADF-------DKCDAERALATVELLC  311 (418)
Q Consensus       257 ~~~~~a~~aL~~L~~~~~n------------------~~~i~~~G~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~  311 (418)
                      .++..|+..+..++.....                  ....+ ...+|.++..|...       +..++..+..+|..++
T Consensus       281 ~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~  359 (861)
T 2bpt_A          281 KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSI-KDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFA  359 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHH-HHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhHHHHHHHH-HHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHH
Confidence            9999999999998765311                  01111 45778888888642       1246677888888887


Q ss_pred             cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC-HHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHH
Q 014817          312 RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS-ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQL  390 (418)
Q Consensus       312 ~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~  390 (418)
                      ..-.  ..+..  ..++.+.+.+.+.+...++.|+.+|..++.+. ++...... ..+++.|+..+... ++.+|..+.+
T Consensus       360 ~~~~--~~~~~--~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~-~~~vr~~a~~  433 (861)
T 2bpt_A          360 QNCG--NHILE--PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQ-SLQVKETTAW  433 (861)
T ss_dssp             HHHG--GGGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred             HHcc--HhHHH--HHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCC-cHHHHHHHHH
Confidence            5321  11111  34455556666678899999999999999753 23222222 24677777777666 8999999999


Q ss_pred             HHHHHHhhC
Q 014817          391 LLKLLRDSW  399 (418)
Q Consensus       391 ~L~~l~~~~  399 (418)
                      +|..+...-
T Consensus       434 ~l~~l~~~~  442 (861)
T 2bpt_A          434 CIGRIADSV  442 (861)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            999888763

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.31  E-value=7.1e-06  Score=73.70  Aligned_cols=186  Identities=11%  Similarity=0.089  Sum_probs=136.5

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh-cCCCChhhhHHHHHHHHHHccccccH
Q 014817          198 TSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK-NLSSYPRGLKVGIKALFALCLVKQTR  276 (418)
Q Consensus       198 ~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~~a~~aL~~L~~~~~n~  276 (418)
                      +.+.+.+.+.+...|..|+..|..++.  ..+....  .....+++.|...+. +.  +..++..|+.+|..|+..-...
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~--~~~~~~~--~~~~~i~~~L~~~l~kd~--~~~V~~~a~~~l~~la~~l~~~   91 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLT--DHPKLEN--GEYGALVSALKKVITKDS--NVVLVAMAGKCLALLAKGLAKR   91 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHH--HCSSBCC--CCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHGGG
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHc--cCCCCCC--CCHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHHHhhh
Confidence            347788889999999999999999952  2122111  112357888999995 76  8999999999999999643221


Q ss_pred             HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc-C
Q 014817          277 YKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS-A  355 (418)
Q Consensus       277 ~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~  355 (418)
                      ..-.-.-.+|.|+..+.+.+..+++.+..+|..++.....     .  ..++.+...+.+.++.+++.++..|..+.. .
T Consensus        92 ~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~-----~--~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~  164 (242)
T 2qk2_A           92 FSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL-----E--AQQESIVESLSNKNPSVKSETALFIARALTRT  164 (242)
T ss_dssp             GHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH-----H--HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH-----H--HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            1112234789999999888888999999999998864321     1  346678888888899999999999999654 3


Q ss_pred             CHHH--HHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          356 SERC--QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       356 ~~~~--~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      .++.  ...+  ..+++.|+..+... +.++|..|..++..+...-
T Consensus       165 ~~~~~~~~~l--~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          165 QPTALNKKLL--KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             CGGGCCHHHH--HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCccHHHH--HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHc
Confidence            2321  1111  24788888888666 9999999999999988754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.30  E-value=2.6e-07  Score=74.87  Aligned_cols=120  Identities=10%  Similarity=-0.024  Sum_probs=85.6

Q ss_pred             cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817          145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLA  224 (418)
Q Consensus       145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~  224 (418)
                      ...++.|+.+|.++       ++.++..|+.+|..+..            ..++.|+..|++.++.+|..|+++|.++  
T Consensus        11 ~~~~~~l~~~L~~~-------~~~vR~~A~~~L~~~~~------------~~~~~L~~~L~d~~~~vR~~A~~aL~~~--   69 (131)
T 1te4_A           11 SSGLVPRGSHMADE-------NKWVRRDVSTALSRMGD------------EAFEPLLESLSNEDWRIRGAAAWIIGNF--   69 (131)
T ss_dssp             ----------CCSS-------CCCSSSSCCSSTTSCSS------------TTHHHHHHGGGCSCHHHHHHHHHHHGGG--
T ss_pred             cccHHHHHHHhcCC-------CHHHHHHHHHHHHHhCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHhc--
Confidence            34567788888766       46777777777765531            1268899999999999999999998888  


Q ss_pred             cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817          225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERAL  304 (418)
Q Consensus       225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~  304 (418)
                       ..           ..+++.|+.+|++.  ++.++..|+++|.++..          ..+++.|+.+|.+.+..++..++
T Consensus        70 -~~-----------~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~d~~~~vr~~A~  125 (131)
T 1te4_A           70 -QD-----------ERAVEPLIKLLEDD--SGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAV  125 (131)
T ss_dssp             -CS-----------HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHH
T ss_pred             -CC-----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHH
Confidence             31           34688899999887  89999999999998852          34688899999887888888888


Q ss_pred             HHHHH
Q 014817          305 ATVEL  309 (418)
Q Consensus       305 ~~L~~  309 (418)
                      .+|..
T Consensus       126 ~aL~~  130 (131)
T 1te4_A          126 NYLET  130 (131)
T ss_dssp             HHGGG
T ss_pred             HHHHh
Confidence            77754

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.28  E-value=4.6e-06  Score=72.54  Aligned_cols=220  Identities=9%  Similarity=0.029  Sum_probs=157.5

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCCh-hHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTE-TECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG  225 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~  225 (418)
                      .+..|..+|...       |+.++.+|+.+|..+-..- ...+..+. ...++.++.++++.+..+...|..+|..|.  
T Consensus        34 ~l~~L~~LL~dk-------D~~vk~raL~~LeellK~~~~~l~~~~~-e~~Ld~iI~llk~~dEkval~A~r~L~~LL--  103 (265)
T 3b2a_A           34 ALFLILELAGED-------DETTRLRAFVALGEILKRADSDLRMMVL-ERHLDVFINALSQENEKVTIKALRALGYLV--  103 (265)
T ss_dssp             HHHHHHHHTTSS-------CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHTCCSTTHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhcc-------chHHHHHHHHHHHHHHHhccccccHHHH-HHHHHHHHHHHhccchhHHHHHHHHHHHHH--
Confidence            567788899666       6899999999999776441 12333333 346899999999999999999999999996  


Q ss_pred             ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHH
Q 014817          226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALA  305 (418)
Q Consensus       226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~  305 (418)
                      ...+-.....   ..++.+|..++.++  ++-....|+..|..|......+.      ++..+.+++.+.+.+++..++.
T Consensus       104 e~vpL~~~~y---~Kl~~aL~dlik~~--~~il~~eaae~Lgklkv~~~~~~------V~~~l~sLl~Skd~~vK~agl~  172 (265)
T 3b2a_A          104 KDVPMGSKTF---LKAAKTLVSLLESP--DDMMRIETIDVLSKLQPLEDSKL------VRTYINELVVSPDLYTKVAGFC  172 (265)
T ss_dssp             TTCCBCHHHH---HHHHHHHHHHTTSC--CHHHHHHHHHHHHHCCBSCCCHH------HHHHHHHHHTCSSHHHHHHHHH
T ss_pred             cCCCCCHHHH---HHHHHHHHHHhcCC--CchHHHHHHHHhCcCCcccchHH------HHHHHHHHHhCCChhHHHHHHH
Confidence            3333333344   23778899999988  89999999999999943333333      5677889998889999999999


Q ss_pred             HHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHH------h-h
Q 014817          306 TVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLV------Q-S  378 (418)
Q Consensus       306 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll------~-~  378 (418)
                      +|.+++...+....+   .+.+.-+-.++.+.++.+.+.|+.+|..+.... - .     +.+++.+..++      - -
T Consensus       173 ~L~eia~~S~D~~i~---~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~p-i-~-----~~~~~~~~~~~~~v~~l~~~  242 (265)
T 3b2a_A          173 LFLNMLNSSADSGHL---TLILDEIPSLLQNDNEFIVELALDVLEKALSFP-L-L-----ENVKIELLKISRIVDGLVYR  242 (265)
T ss_dssp             HHHHHGGGCSSCCCG---GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSC-C-C-----SCCHHHHHHHHHHHHHGGGC
T ss_pred             HHHHhhcccCCHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCc-c-c-----HhHHHHHHHHHHHHHHHHHh
Confidence            999999644322211   123334556677899999999999999988731 1 0     22333333332      2 3


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 014817          379 DCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       379 ~~~~~~~~~A~~~L~~l~~  397 (418)
                      .|.+..+.+|..+-..+-.
T Consensus       243 ~~~~~~~~ka~~v~~~le~  261 (265)
T 3b2a_A          243 EGAPIIRLKAKKVSDLIDS  261 (265)
T ss_dssp             SSCHHHHHHHHHHHHHHHH
T ss_pred             cCChhHHHHHHHHHHHHHH
Confidence            4589999999887766644

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.19  E-value=2.9e-06  Score=61.99  Aligned_cols=50  Identities=10%  Similarity=0.214  Sum_probs=41.5

Q ss_pred             CCcccCcCccccc--cCCeecCCC-----CcccHHHHHHHHHc-CCCCCCCCCCCCCC
Q 014817           15 PYHFRCPISLELM--CDPVTVCTG-----QTYDRPSIESWVAT-GNTTCPVTRSPLTD   64 (418)
Q Consensus        15 ~~~~~Cpi~~~~~--~dPv~~~~g-----~~~~r~~i~~~~~~-~~~~cp~~~~~l~~   64 (418)
                      .++..|+||++.+  .+|++++|+     |.|-+.||.+|+.. +..+||+|+..+..
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~   70 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIM   70 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeec
Confidence            3456799999877  579999996     99999999999975 34689999988753

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.18  E-value=7e-06  Score=73.74  Aligned_cols=182  Identities=13%  Similarity=0.113  Sum_probs=130.4

Q ss_pred             HHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHhcccc
Q 014817          150 ILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLF-HSSIEVRVNSAALIEIVLAGMRS  228 (418)
Q Consensus       150 ~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~s~~  228 (418)
                      .+.+.+.+.       +...+..|+..|..+.......... .-...++.|...|. +.+..++..|+.+|..|+. ...
T Consensus        19 ~l~~~l~s~-------~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~-~l~   89 (242)
T 2qk2_A           19 DFYDKLEEK-------KWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAK-GLA   89 (242)
T ss_dssp             THHHHHTCS-------SHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH-HHG
T ss_pred             HHHhhhccC-------CHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH-HHh
Confidence            466666655       5788888888887665321010000 01245777888884 8899999999999999952 112


Q ss_pred             hhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHH
Q 014817          229 QELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVE  308 (418)
Q Consensus       229 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~  308 (418)
                      +.....+   ..+++.|+..+.+.  ++.++..|..+|.++......      ...++.|...|.+.+..++..++..|.
T Consensus        90 ~~~~~~~---~~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~  158 (242)
T 2qk2_A           90 KRFSNYA---SACVPSLLEKFKEK--KPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIA  158 (242)
T ss_dssp             GGGHHHH---HHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred             hhHHHHH---HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHH
Confidence            2222222   34899999999988  899999999999999875431      126778888888888899999999999


Q ss_pred             HHhcC--Hh--HHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          309 LLCRI--PA--GCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       309 ~L~~~--~~--~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      .+...  ++  ....+ .  ..++.|++.+...+..++..|..++..++.
T Consensus       159 ~~l~~~~~~~~~~~~l-~--~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          159 RALTRTQPTALNKKLL-K--LLTTSLVKTLNEPDPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             HHHTTCCGGGCCHHHH-H--HHHHHHHHHHTSSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccHHHH-H--HHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            96533  22  12222 2  468899999988999999999999999886

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.12  E-value=1.8e-05  Score=68.84  Aligned_cols=213  Identities=12%  Similarity=0.107  Sum_probs=148.4

Q ss_pred             cccHHHHHHHHHHHHhccCCCcccCCCCCCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcC-hhhhhHHhhcC
Q 014817           68 IPNHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDS-DKNRSLISSHN  146 (418)
Q Consensus        68 ~~n~~L~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~-~~~~~~i~~~g  146 (418)
                      +.-..+++-+..|.-.......        ..+++.+..|++.|...  +...+..|+..|.++.+.- ...+...+ ..
T Consensus         7 i~~~~lre~L~sWkiK~a~ela--------~~~e~~l~~L~~LL~dk--D~~vk~raL~~LeellK~~~~~l~~~~~-e~   75 (265)
T 3b2a_A            7 ISKTELRELVLSWQILDAVSLA--------LEDKRALFLILELAGED--DETTRLRAFVALGEILKRADSDLRMMVL-ER   75 (265)
T ss_dssp             CCHHHHHHHHHTTCHHHHHHHH--------HHCHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHHHSCHHHHHHHH-HH
T ss_pred             ccHHHHHHHHHHhhHHHHHHHH--------HhchhHHHHHHHHHhcc--chHHHHHHHHHHHHHHHhccccccHHHH-HH
Confidence            3335677777888654211000        01334566677777554  3345688999999998873 33343344 45


Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGM  226 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s  226 (418)
                      .++.++.++.+.       |..+.-.|+.+|..|-.+.+-..+.+.  -.+..|..++.++++-.+.+++..+..+   .
T Consensus        76 ~Ld~iI~llk~~-------dEkval~A~r~L~~LLe~vpL~~~~y~--Kl~~aL~dlik~~~~il~~eaae~Lgkl---k  143 (265)
T 3b2a_A           76 HLDVFINALSQE-------NEKVTIKALRALGYLVKDVPMGSKTFL--KAAKTLVSLLESPDDMMRIETIDVLSKL---Q  143 (265)
T ss_dssp             HHHHHHHTCCST-------THHHHHHHHHHHHHHHTTCCBCHHHHH--HHHHHHHHHTTSCCHHHHHHHHHHHHHC---C
T ss_pred             HHHHHHHHHhcc-------chhHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHHhcCCCchHHHHHHHHhCcC---C
Confidence            799999999777       578999999988866544321122221  2357888899999999999999999998   3


Q ss_pred             cchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHH
Q 014817          227 RSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALAT  306 (418)
Q Consensus       227 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~  306 (418)
                      ....       ..+++..|..++.+.  +..++.+|+++|.+++...++..-  -.+++.-+-.+|.+.|+.+++.|+.+
T Consensus       144 v~~~-------~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~D~~i--~~~I~~eI~elL~~eD~~l~e~aLd~  212 (265)
T 3b2a_A          144 PLED-------SKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSADSGH--LTLILDEIPSLLQNDNEFIVELALDV  212 (265)
T ss_dssp             BSCC-------CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCSSCCC--GGGTTTTHHHHHTCSCHHHHHHHHHH
T ss_pred             cccc-------hHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccCCHHH--HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence            3222       246778888889776  899999999999999976543321  13456667788999999999999999


Q ss_pred             HHHHhcCH
Q 014817          307 VELLCRIP  314 (418)
Q Consensus       307 L~~L~~~~  314 (418)
                      |..+...+
T Consensus       213 Le~ils~p  220 (265)
T 3b2a_A          213 LEKALSFP  220 (265)
T ss_dssp             HHHHTTSC
T ss_pred             HHHHHcCc
Confidence            99988753

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.11  E-value=0.00018  Score=73.84  Aligned_cols=257  Identities=12%  Similarity=0.110  Sum_probs=167.2

Q ss_pred             HHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh
Q 014817          106 TLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET  185 (418)
Q Consensus       106 ~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~  185 (418)
                      .+.+.|.+.+.+..-|..|+-++.++...+++   .+...+.++.|.++|.+.       ++.|+..|+.+|..++..+.
T Consensus       150 ~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~---~~~~~~~~~~l~~lL~d~-------d~~V~~~a~~~l~~i~~~~~  219 (621)
T 2vgl_A          150 EIPKILVAGDTMDSVKQSAALCLLRLYRTSPD---LVPMGDWTSRVVHLLNDQ-------HLGVVTAATSLITTLAQKNP  219 (621)
T ss_dssp             HHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGG---GCCCCSCHHHHHHHTTCS-------CHHHHHHHHHHHHHHHHHCH
T ss_pred             HHHHHHhCCCCCHHHHHHHHHHHHHHHHhChh---hcCchhHHHHHHHHhCCC-------CccHHHHHHHHHHHHHHhCh
Confidence            34444432333334456788888888765543   222248899999999755       68899999999988765332


Q ss_pred             HHHhhcccCCchHHHHHHhc----CC-------------CHHHHHHHHHHHHHHHhcccc--hhhhhHhhchhhhHHHHH
Q 014817          186 ECMEIASDADKITSLSSLLF----HS-------------SIEVRVNSAALIEIVLAGMRS--QELRAQISNLDEIFEGVI  246 (418)
Q Consensus       186 ~~~~~i~~~g~i~~Lv~~L~----~~-------------~~~~~~~a~~~L~~L~~~s~~--~~~~~~i~~~~g~i~~Lv  246 (418)
                      +   .+  ...++.+++.|.    .+             ++-.+.....+|..+   ...  ++.+..+   ...++.++
T Consensus       220 ~---~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~---~~~~d~~~~~~l---~~~L~~il  288 (621)
T 2vgl_A          220 E---EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCY---PPPEDPAVRGRL---TECLETIL  288 (621)
T ss_dssp             H---HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGS---SSCSSHHHHHHH---HHHHHHHH
T ss_pred             H---HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHh---CCCCCHHHHHHH---HHHHHHHH
Confidence            2   11  133455554443    22             466777777777777   432  2333333   12444444


Q ss_pred             HHhhcCC-------CCh--hhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHH
Q 014817          247 DILKNLS-------SYP--RGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGC  317 (418)
Q Consensus       247 ~lL~~~~-------~~~--~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~  317 (418)
                      ..+.+..       .+.  .+.-.++.++..+....+...     .++..|..+|.+.+.+++-.++..|..++......
T Consensus       289 ~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~  363 (621)
T 2vgl_A          289 NKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSH  363 (621)
T ss_dssp             HHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH
T ss_pred             HhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH
Confidence            4332210       022  677788899988864322222     36778889998888999999999999998654222


Q ss_pred             HHHHhccCChHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 014817          318 AEFAEHALTVPLLVKTIL-KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLR  396 (418)
Q Consensus       318 ~~i~~~~g~i~~Lv~~l~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~  396 (418)
                      ..+ .  .....++..+. +.+..++..|+.+|..++.  +.+...     ++..|...+... +...++.+...+..++
T Consensus       364 ~~~-~--~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~--~~Nv~~-----Iv~eL~~yl~~~-d~~~~~~~v~~I~~la  432 (621)
T 2vgl_A          364 EAV-K--THIETVINALKTERDVSVRQRAVDLLYAMCD--RSNAQQ-----IVAEMLSYLETA-DYSIREEIVLKVAILA  432 (621)
T ss_dssp             HHH-H--TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC--HHHHHH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHH
T ss_pred             HHH-H--HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC--hhhHHH-----HHHHHHHHHHhc-CHHHHHHHHHHHHHHH
Confidence            223 2  45778888888 8899999999999999986  444443     667788888766 8888888888888887


Q ss_pred             hhC
Q 014817          397 DSW  399 (418)
Q Consensus       397 ~~~  399 (418)
                      ..+
T Consensus       433 ~k~  435 (621)
T 2vgl_A          433 EKY  435 (621)
T ss_dssp             HHH
T ss_pred             Hhc
Confidence            654

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.10  E-value=3.9e-07  Score=71.56  Aligned_cols=45  Identities=18%  Similarity=0.408  Sum_probs=0.0

Q ss_pred             ccCcCccccccCCe-----------------e-cCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           18 FRCPISLELMCDPV-----------------T-VCTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv-----------------~-~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      -.|+||++.|.+|-                 + ++|||.|.+.||.+|+.. +.+||.|+.++.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence            37999999998852                 2 489999999999999986 678999998754

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.09  E-value=2.1e-07  Score=75.39  Aligned_cols=121  Identities=16%  Similarity=0.041  Sum_probs=91.1

Q ss_pred             cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817          193 DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV  272 (418)
Q Consensus       193 ~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~  272 (418)
                      ....++.|+..|++.++.+|..|+++|..+   ..           . .++.|+.+|++.  ++.++..|+++|.++.. 
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~---~~-----------~-~~~~L~~~L~d~--~~~vR~~A~~aL~~~~~-   71 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRM---GD-----------E-AFEPLLESLSNE--DWRIRGAAAWIIGNFQD-   71 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSC---SS-----------T-THHHHHHGGGCS--CHHHHHHHHHHHGGGCS-
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHh---Cc-----------h-HHHHHHHHHcCC--CHHHHHHHHHHHHhcCC-
Confidence            346788899999999999999888887766   21           1 258899999987  89999999999999863 


Q ss_pred             cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 014817          273 KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAA  351 (418)
Q Consensus       273 ~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~  351 (418)
                               ..+++.|+.+|.+.+..++..++.+|..+..           ..+++.|++.+.+.+..++..|+.+|..
T Consensus        72 ---------~~a~~~L~~~L~d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 ---------ERAVEPLIKLLEDDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             ---------HHHHHHHHHHHHHCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             ---------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                     2368999999998889999999999998762           2457889998888899999999988764

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.07  E-value=4.9e-05  Score=68.63  Aligned_cols=193  Identities=10%  Similarity=0.089  Sum_probs=132.0

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHH-HHhcccchhhhhHhhchhhhHHHHHHHh-hcCCCChhhhHHHHHHHHHHccccc-cH
Q 014817          200 LSSLLFHSSIEVRVNSAALIEI-VLAGMRSQELRAQISNLDEIFEGVIDIL-KNLSSYPRGLKVGIKALFALCLVKQ-TR  276 (418)
Q Consensus       200 Lv~~L~~~~~~~~~~a~~~L~~-L~~~s~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~a~~aL~~L~~~~~-n~  276 (418)
                      +...|.+.+...|..|+..|.. ++  ....+..........++..|...+ ++.  +..++..|+.+|..|+..-. ..
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~--~~~~~i~~~~~~~~~~~~~L~~~l~~D~--n~~v~~~A~~al~~la~~l~~~~   96 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVL--SQTKKLKSTSQNYSNLLGIYGHIIQKDA--NIQAVALAAQSVELICDKLKTPG   96 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTG--GGCCCBCCTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHH--hcCCccccCcccHHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHHHhccccc
Confidence            4566788999999999999998 83  122221100112245788899999 555  89999999999999995432 11


Q ss_pred             -H-HHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHh-ccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 014817          277 -Y-KAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAE-HALTVPLLVKTILKISDRATEYAAGALAALC  353 (418)
Q Consensus       277 -~-~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~  353 (418)
                       . ... .-.+|.+++.+.+....+++.+..+|..++..-+- ..... -...++.|+..|.+.++.+++.++.+|..++
T Consensus        97 f~~~y~-~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~-~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~  174 (249)
T 2qk1_A           97 FSKDYV-SLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDP-LASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASM  174 (249)
T ss_dssp             SCHHHH-HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCT-TCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             ccHHHH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccc-cccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence             1 122 22788999999887788888888888887742110 00000 0124556777788889999999999999988


Q ss_pred             cCCH---HHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          354 SASE---RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       354 ~~~~---~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ...+   ......+...+++.|..++... ++.+|..|..+|..+...-
T Consensus       175 ~~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~~v  222 (249)
T 2qk1_A          175 KEEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIKIF  222 (249)
T ss_dssp             HHCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh
Confidence            6322   2211222256889999999666 9999999999999988653

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.04  E-value=0.002  Score=54.00  Aligned_cols=215  Identities=12%  Similarity=0.109  Sum_probs=148.0

Q ss_pred             ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHh
Q 014817          146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLF-HSSIEVRVNSAALIEIVLA  224 (418)
Q Consensus       146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~  224 (418)
                      .++..++.+|.++       -..|+.+|+.++..++..-++....+     +..|..+++ +..-......+.+++.+  
T Consensus        32 ~~l~~lI~~LDDD-------lwtV~kNAl~vi~~i~~~~~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~l--   97 (253)
T 2db0_A           32 SVLKKLIELLDDD-------LWTVVKNAISIIMVIAKTREDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQM--   97 (253)
T ss_dssp             HHHHHHHHHTTCS-------CHHHHHHHHHHHHHHHTTCGGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHhccH-------HHHHHHhHHHHHHHHHHHhHHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHH--
Confidence            4678888999776       47899999999998876543332222     445555554 45666666778888888  


Q ss_pred             cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817          225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERAL  304 (418)
Q Consensus       225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~  304 (418)
                       +..   +..+.  .+++|.|..=.+-+  ++..+.+...+|..++.....-.    .+++.-+..++.+.+..-+-.++
T Consensus        98 -a~i---~Pe~v--~~vVp~lfanyrig--d~kikIn~~yaLeeIaranP~l~----~~v~rdi~smltskd~~Dkl~aL  165 (253)
T 2db0_A           98 -AKE---KPELV--KSMIPVLFANYRIG--DEKTKINVSYALEEIAKANPMLM----ASIVRDFMSMLSSKNREDKLTAL  165 (253)
T ss_dssp             -HHH---CHHHH--HHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHCHHHH----HHHHHHHHHHTSCSSHHHHHHHH
T ss_pred             -HHh---CHHHH--HhhHHHHHHHHhcC--CccceecHHHHHHHHHHhChHHH----HHHHHHHHHHhcCCChHHHHHHH
Confidence             322   23332  35888888888888  89999999999999986544322    33566778888876644444455


Q ss_pred             HHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHH
Q 014817          305 ATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRA  384 (418)
Q Consensus       305 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  384 (418)
                      ..+..+.   ++.-..+.  -.+|.|..+|...+..++..|+.+|.+++.-++..|..      +...+.-+... ++-+
T Consensus       166 nFi~alG---en~~~yv~--PfLprL~aLL~D~deiVRaSaVEtL~~lA~~npklRki------i~~kl~e~~D~-S~lv  233 (253)
T 2db0_A          166 NFIEAMG---ENSFKYVN--PFLPRIINLLHDGDEIVRASAVEALVHLATLNDKLRKV------VIKRLEELNDT-SSLV  233 (253)
T ss_dssp             HHHHTCC---TTTHHHHG--GGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSCHHHHHH------HHHHHHHCCCS-CHHH
T ss_pred             HHHHHHh---ccCccccC--cchHHHHHHHcCcchhhhHHHHHHHHHHHHcCHHHHHH------HHHHHHHhcCc-HHHH
Confidence            4444433   33333332  46899999998899999999999999999988887774      33333545445 7777


Q ss_pred             HHHHHHHHHHHHhh
Q 014817          385 KRKAQLLLKLLRDS  398 (418)
Q Consensus       385 ~~~A~~~L~~l~~~  398 (418)
                      +.+....|..+.-.
T Consensus       234 ~~~V~egL~rl~l~  247 (253)
T 2db0_A          234 NKTVKEGISRLLLL  247 (253)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHH
Confidence            77777777666544

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.01  E-value=9.5e-05  Score=68.31  Aligned_cols=144  Identities=15%  Similarity=0.053  Sum_probs=115.1

Q ss_pred             ChhhhHHHHHHHHH-HccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHH
Q 014817          255 YPRGLKVGIKALFA-LCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKT  333 (418)
Q Consensus       255 ~~~~~~~a~~aL~~-L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~  333 (418)
                      +.+.++.++.-|.. +....+....+++.||+..|+.+...++.+.+.-++.+|..|..+..|...++.+...|..++.+
T Consensus       131 ~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~~v~Gm~gvvs~~~fI~~lysl  210 (339)
T 3dad_A          131 SGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLMLFVDGMLGVVAHSDTIQWLYTL  210 (339)
T ss_dssp             CHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTTSHHHHHHHHHCHHHHHHHHHG
T ss_pred             CcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHhccccccchhCCHHHHHHHHHH
Confidence            56667777777776 44556778999999999999999999999999999999999999999999998877788899988


Q ss_pred             HhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhc--------C--hHHHHHHHHh--hCCCHHHHHHHHHHHHHHHhh
Q 014817          334 ILKISDRATEYAAGALAALCSASERCQRDAVSA--------G--VLTQLLLLVQ--SDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       334 l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~--------g--~i~~L~~ll~--~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +.+....+.+.|+.+|..++..++.....+.++        |  -...|+.+|+  ..++..++-+|..++..+-..
T Consensus       211 v~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~amtLIN~lL~~  287 (339)
T 3dad_A          211 CASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYTVTLINKTLAA  287 (339)
T ss_dssp             GGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHHHHHHHHHHHH
T ss_pred             HcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHHHHHHHHHHhc
Confidence            888889999999999999998554333222221        1  2678888997  234888998888887766554

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.01  E-value=8.3e-05  Score=67.09  Aligned_cols=179  Identities=9%  Similarity=0.116  Sum_probs=125.5

Q ss_pred             ChhHHHHHHHHHhc-CCCChhHHHhhc---cc-CCchHHHHHHh-cCCCHHHHHHHHHHHHHHHhcccchhhh-hHhhch
Q 014817          166 SPELAHESLALLVM-FPLTETECMEIA---SD-ADKITSLSSLL-FHSSIEVRVNSAALIEIVLAGMRSQELR-AQISNL  238 (418)
Q Consensus       166 ~~~v~~~a~~~L~~-l~~~~~~~~~~i---~~-~g~i~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~s~~~~~~-~~i~~~  238 (418)
                      +..-+..|+..|.. +..+.   .+..   .+ ...+..|.+.| +..+..++..|+.+|..|+.+...+... ...   
T Consensus        29 ~w~eRk~al~~L~~~~~~~~---~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~y~---  102 (249)
T 2qk1_A           29 KWKDRVEALEEFWDSVLSQT---KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKDYV---  102 (249)
T ss_dssp             SHHHHHHHHHHHHHHTGGGC---CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHHHH---
T ss_pred             CHHHHHHHHHHHHHHHHhcC---CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHHHH---
Confidence            57778888888887 76321   2222   11 24577788888 6889999999999999994211101221 222   


Q ss_pred             hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHH-HHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHh-
Q 014817          239 DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKA-VAAGAAETLVDRLADFDKCDAERALATVELLCRIPA-  315 (418)
Q Consensus       239 ~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i-~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-  315 (418)
                      .-+++.++..+.+.  .+.++.++..+|.+++.+-+ +...- . ...++.|+..|.+.+..+++.++.+|..++.... 
T Consensus       103 ~~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~~~~~~~~~~l-~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~  179 (249)
T 2qk1_A          103 SLVFTPLLDRTKEK--KPSVIEAIRKALLTICKYYDPLASSGRN-EDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKD  179 (249)
T ss_dssp             HHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHHSCTTCTTCTT-HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHccccccCCcH-HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            23789999999988  78999999999999886432 11000 0 1267788888888888999999999998884322 


Q ss_pred             ---HHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          316 ---GCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       316 ---~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                         .-...+. ...+|.|.+.|...+..+++.|..+|..++.
T Consensus       180 ~~~~l~~~l~-~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          180 GYSTLQRYLK-DEVVPIVIQIVNDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             CSHHHHHHHT-TTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHH-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence               1112221 3789999999999999999999999999887

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.01  E-value=0.00013  Score=70.68  Aligned_cols=223  Identities=12%  Similarity=0.104  Sum_probs=151.0

Q ss_pred             hHHHHHHHHHhcCCCChhHHHhhcccCC--chHHHHHHhcC---------------C--CHHHHHHHHHHHHHHHhcccc
Q 014817          168 ELAHESLALLVMFPLTETECMEIASDAD--KITSLSSLLFH---------------S--SIEVRVNSAALIEIVLAGMRS  228 (418)
Q Consensus       168 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g--~i~~Lv~~L~~---------------~--~~~~~~~a~~~L~~L~~~s~~  228 (418)
                      ..+..++.+|..|...+ +.|..+.+.+  .++.++.+++.               +  ..+.+.+++-+++-|   +.+
T Consensus       183 ~~~~i~v~~L~~Ll~~~-~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlL---SF~  258 (480)
T 1ho8_A          183 DTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL---TFN  258 (480)
T ss_dssp             HHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH---TTS
T ss_pred             chHHHHHHHHHHHhcch-hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHH---HcC
Confidence            34556777777776666 7888887543  36666654431               1  256688999999999   888


Q ss_pred             hhhhhHhhchhhhH--HHHHHHhhcCCCChhhhHHHHHHHHHHccccc-----cHHHHH-HcCchHHHHHHhcCC---Cc
Q 014817          229 QELRAQISNLDEIF--EGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-----TRYKAV-AAGAAETLVDRLADF---DK  297 (418)
Q Consensus       229 ~~~~~~i~~~~g~i--~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-----n~~~i~-~~G~v~~Lv~lL~~~---~~  297 (418)
                      ++..+.+.. .++.  +.|+.+++... .+.+.+-++.+|.||.....     ....++ ..++ +.+++.|...   |+
T Consensus       259 ~~~~~~l~~-~~i~~~~~L~~i~k~s~-KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~De  335 (480)
T 1ho8_A          259 PVFANELVQ-KYLSDFLDLLKLVKITI-KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDE  335 (480)
T ss_dssp             HHHHHHHHT-TSHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSH
T ss_pred             HHHHHHHHh-cchHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcH
Confidence            888887754 4443  67888888765 68899999999999987641     222233 3444 5577777542   55


Q ss_pred             ccHHHHHHHHHH-------HhcCHhHHHHHHh------------------------c-cCChHHHHHHHhc---------
Q 014817          298 CDAERALATVEL-------LCRIPAGCAEFAE------------------------H-ALTVPLLVKTILK---------  336 (418)
Q Consensus       298 ~~~~~a~~~L~~-------L~~~~~~~~~i~~------------------------~-~g~i~~Lv~~l~~---------  336 (418)
                      ++.+..-.+...       ++.-++++.++..                        . -..+..|+++|.+         
T Consensus       336 dl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~  415 (480)
T 1ho8_A          336 ELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNA  415 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcccccccc
Confidence            554443332222       2223333333221                        1 1256788888863         


Q ss_pred             -CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          337 -ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       337 -~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                       .++.+..-|+.=|..+++..|+-+..+.+.|+=..++.++.+. ++++|..|..+++.+-.+
T Consensus       416 s~d~~~laVAc~Digefvr~~P~gr~i~~~lg~K~~VM~Lm~h~-d~~Vr~~AL~avQklm~~  477 (480)
T 1ho8_A          416 KQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIGY  477 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEeecccHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence             2566667777777888887788888888899999999999777 999999999999887665

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=97.95  E-value=0.0031  Score=64.60  Aligned_cols=258  Identities=12%  Similarity=0.083  Sum_probs=162.3

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHh--hcccccccCCChhHHHHHHHHHhcCCC
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVF--FTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL--~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      ..+.+-|++++  ...+--|++.|..+..  ++    +. ...++.+.++|  .+.       ++.|+..|+.++..+..
T Consensus       114 N~l~kDl~~~n--~~ir~lALr~L~~i~~--~e----~~-~~l~~~v~~~l~~~d~-------~~~VRK~A~~al~kl~~  177 (621)
T 2vgl_A          114 NAIKNDLASRN--PTFMGLALHCIANVGS--RE----MA-EAFAGEIPKILVAGDT-------MDSVKQSAALCLLRLYR  177 (621)
T ss_dssp             HHHHHHHHSCC--HHHHHHHHHHHHHHCC--HH----HH-HHHTTHHHHHHHCSSS-------CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCC--HHHHHHHHHHhhccCC--HH----HH-HHHHHHHHHHHhCCCC-------CHHHHHHHHHHHHHHHH
Confidence            34555566553  3345678888887743  33    22 23567888888  444       68999999999887764


Q ss_pred             ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCC--------
Q 014817          183 TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSS--------  254 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~--------  254 (418)
                      ..   ...+-..++++.|.++|.+.++.++..|+.+|..++  ..+.+.-...  ....+..|-+++..+..        
T Consensus       178 ~~---p~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~--~~~~~~~~~~--~~~~~~~L~~ll~~~~~~~~~~~~~  250 (621)
T 2vgl_A          178 TS---PDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLA--QKNPEEFKTS--VSLAVSRLSRIVTSASTDLQDYTYY  250 (621)
T ss_dssp             HC---GGGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHH--HHCHHHHTTH--HHHHHHHHHHHHHCCSSSCSTTEET
T ss_pred             hC---hhhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHH--HhChHHHHHH--HHHHHHHHHHHHhCCCCCccchhhc
Confidence            22   233333589999999999999999999999999994  2222211111  02233444444433211        


Q ss_pred             ---ChhhhHHHHHHHHHHcccc--ccHHHHHHcCchHHHHHHhcC---------CC--cccHHHHHHHHHHHhcCHhHHH
Q 014817          255 ---YPRGLKVGIKALFALCLVK--QTRYKAVAAGAAETLVDRLAD---------FD--KCDAERALATVELLCRIPAGCA  318 (418)
Q Consensus       255 ---~~~~~~~a~~aL~~L~~~~--~n~~~i~~~G~v~~Lv~lL~~---------~~--~~~~~~a~~~L~~L~~~~~~~~  318 (418)
                         ++-.+...+..|..++..+  +.+..+.+  .++.++..+.+         .+  ..+.-.++.++..+...++.+.
T Consensus       251 ~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~  328 (621)
T 2vgl_A          251 FVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV  328 (621)
T ss_dssp             TEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
T ss_pred             CCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH
Confidence               3567778888888887543  23333322  33344433211         11  2566677888887775554433


Q ss_pred             HHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHh-hCCCHHHHHHHHHHHHHHHh
Q 014817          319 EFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQ-SDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       319 ~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~-~~~~~~~~~~A~~~L~~l~~  397 (418)
                      .      ++..|..++.+.++.++-.|+..|..++...+. .. ++ ......++..|. ++ +..+|..|..+|..+..
T Consensus       329 ~------~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~-~~-~~-~~~~~~i~~~L~~d~-d~~Ir~~aL~lL~~l~~  398 (621)
T 2vgl_A          329 R------ACNQLGQFLQHRETNLRYLALESMCTLASSEFS-HE-AV-KTHIETVINALKTER-DVSVRQRAVDLLYAMCD  398 (621)
T ss_dssp             H------HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTT-HH-HH-HTTHHHHHHHHTTCC-CHHHHHHHHHHHHHHCC
T ss_pred             H------HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCc-HH-HH-HHHHHHHHHHhccCC-CHhHHHHHHHHHHHHcC
Confidence            3      345677777778999999999999999985431 11 12 234566667776 55 88999999999887764

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.88  E-value=0.00029  Score=65.04  Aligned_cols=186  Identities=12%  Similarity=0.058  Sum_probs=134.4

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH
Q 014817          197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR  276 (418)
Q Consensus       197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~  276 (418)
                      +..+++.|.+++.+.+..+..-|..+.  +.+.+....+.. .+|+..|+.+...+  +...+..+++||.+|=.+....
T Consensus       120 a~~iiekL~~~~~~~lr~aLfsLk~~~--q~D~~Fa~EFI~-~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~~v~Gm  194 (339)
T 3dad_A          120 VNAILEKLYSSSGPELRRSLFSLKQIF--QEDKDLVPEFVH-SEGLSCLIRVGAAA--DHNYQSYILRALGQLMLFVDGM  194 (339)
T ss_dssp             HHHHHHHHHHCCHHHHHHHHHHHHHHH--HTCTTHHHHHHH-TTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHHhcCCcHHHHHHHHHHHHHh--hcchHHHHHHHH-hccHHHHHHHHHhc--ChHHHHHHHHHHHHHHhccccc
Confidence            345556777788888888888888832  667777777766 57899999999988  8999999999999999887777


Q ss_pred             HHHHH-cCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHh-HHHHHHhc------c-C--ChHHHHHHHh---cCChHHH
Q 014817          277 YKAVA-AGAAETLVDRLADFDKCDAERALATVELLCRIPA-GCAEFAEH------A-L--TVPLLVKTIL---KISDRAT  342 (418)
Q Consensus       277 ~~i~~-~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~------~-g--~i~~Lv~~l~---~~~~~~~  342 (418)
                      ..+++ ...|..+..++.+.+..+...|+.+|..++...+ +...+...      + |  -...|+.+|.   ..+..++
T Consensus       195 ~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq  274 (339)
T 3dad_A          195 LGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELL  274 (339)
T ss_dssp             HHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHH
T ss_pred             cchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHH
Confidence            66664 4678888888888778899999999999986544 33222221      0 1  3679999997   5788899


Q ss_pred             HHHHHHHHHHhc--CCHHHH----HHHHhcChHHHHHHHHhhCC-CHHHHHH
Q 014817          343 EYAAGALAALCS--ASERCQ----RDAVSAGVLTQLLLLVQSDC-TDRAKRK  387 (418)
Q Consensus       343 ~~A~~~L~~l~~--~~~~~~----~~~~~~g~i~~L~~ll~~~~-~~~~~~~  387 (418)
                      .+|...|-.+-.  .+.+.+    ....+.|.-..+...+.+.+ ++..+++
T Consensus       275 ~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          275 VYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            998877665444  333322    33334566667777786553 4566654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.86  E-value=3.7e-05  Score=85.35  Aligned_cols=230  Identities=11%  Similarity=0.026  Sum_probs=150.6

Q ss_pred             HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817          148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR  227 (418)
Q Consensus       148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~  227 (418)
                      ++.|+.-+.++       +.+++..|..-|.+....+...-..-.....++.|++.|.+.++++|..|+.+|..++.  .
T Consensus         8 l~~lL~~l~s~-------d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~--~   78 (1230)
T 1u6g_C            8 ISNLLEKMTSS-------DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVS--K   78 (1230)
T ss_dssp             HHHHHHHTTCS-------SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHT--T
T ss_pred             HHHHHHhcCCC-------CHhHHHHHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH--h
Confidence            45555555555       57888888877765332210000000112457888999998999999999999999952  2


Q ss_pred             chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH------HHHHHcCchHHHHHHhc-CCCcccH
Q 014817          228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR------YKAVAAGAAETLVDRLA-DFDKCDA  300 (418)
Q Consensus       228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~------~~i~~~G~v~~Lv~lL~-~~~~~~~  300 (418)
                      ..+  ..+   ..+++.|+..+.+.  ++.++..|+.+|..++..-...      ..-.-...+|.|+..+. +.+..++
T Consensus        79 ~~~--~~~---~~i~~~Ll~~l~d~--~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~  151 (1230)
T 1u6g_C           79 VKE--YQV---ETIVDTLCTNMLSD--KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQ  151 (1230)
T ss_dssp             SCH--HHH---HHHHHHHHHHTTCS--SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred             CCH--HHH---HHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHH
Confidence            211  122   34788888888877  7888999999999987543221      11123458899999998 4677888


Q ss_pred             HHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC
Q 014817          301 ERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD  379 (418)
Q Consensus       301 ~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~  379 (418)
                      ..++.+|..++.. +..-....  ...++.+++.+.+.+..+++.|+.+|..++...++.   + -...++.|+..|...
T Consensus       152 ~~al~~l~~~~~~~~~~l~~~~--~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~---~-~~~~l~~l~~~L~~~  225 (1230)
T 1u6g_C          152 LEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI---V-FVDLIEHLLSELSKN  225 (1230)
T ss_dssp             HHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhcCHH---H-HHHHHHHHHHHhccC
Confidence            9999999988731 11000001  134556666666788899999999999999743321   1 235688888888765


Q ss_pred             CCHHHHHHHHHHHHHHHhhC
Q 014817          380 CTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       380 ~~~~~~~~A~~~L~~l~~~~  399 (418)
                      .+...|..+..++..+....
T Consensus       226 ~~~~~r~~a~~~l~~l~~~~  245 (1230)
T 1u6g_C          226 DSMSTTRTYIQCIAAISRQA  245 (1230)
T ss_dssp             CSSCSCTTHHHHHHHHHHHS
T ss_pred             CchhHHHHHHHHHHHHHHHh
Confidence            34567777888888887764

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.69  E-value=0.00052  Score=64.79  Aligned_cols=214  Identities=9%  Similarity=0.016  Sum_probs=125.1

Q ss_pred             HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817          148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR  227 (418)
Q Consensus       148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~  227 (418)
                      +..|.+=+.++       |+-++-.|+.+|+++...+  .-     ....+.+.+.|.+.++.+|..|+-+...|.  ..
T Consensus       106 ~Nsl~kDl~~~-------N~~iR~lALRtL~~I~~~~--m~-----~~l~~~lk~~L~d~~pyVRk~A~l~~~kL~--~~  169 (355)
T 3tjz_B          106 TSSLTKDMTGK-------EDSYRGPAVRALCQITDST--ML-----QAIERYMKQAIVDKVPSVSSSALVSSLHLL--KC  169 (355)
T ss_dssp             HHHHHHHHHSS-------CHHHHHHHHHHHHHHCCTT--TH-----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHT--TT
T ss_pred             HHHHHhhcCCC-------cHhHHHHHHHHHhcCCCHH--HH-----HHHHHHHHHHcCCCCHHHHHHHHHHHHHHh--cc
Confidence            55555555555       6889999999999987544  11     234567778888999999999999999883  22


Q ss_pred             chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHH
Q 014817          228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATV  307 (418)
Q Consensus       228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L  307 (418)
                      .   .+.+   .++++.+-+++.+.  ++.++.+|+.+|..+...+.  .      ++..|+..+..+.....-.-+.+|
T Consensus       170 ~---pe~v---~~~~~~l~~ll~d~--n~~V~~~Al~lL~ei~~~d~--~------a~~kLv~~l~~~~l~~~~~q~~ll  233 (355)
T 3tjz_B          170 S---FDVV---KRWVNEAQEAASSD--NIMVQYHALGLLYHVRKNDR--L------AVSKMISKFTRHGLKSPFAYCMMI  233 (355)
T ss_dssp             C---HHHH---HTTHHHHHHHTTCS--SHHHHHHHHHHHHHHHTTCH--H------HHHHHHHHHHSSCCSCHHHHHHHH
T ss_pred             C---HHHH---HHHHHHHHHHhcCC--CccHHHHHHHHHHHHHhhch--H------HHHHHHHHHhcCCCcChHHHHHHH
Confidence            2   3333   35889999999888  89999999999999987542  1      445556666543211111222334


Q ss_pred             HHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHH
Q 014817          308 ELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRK  387 (418)
Q Consensus       308 ~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~  387 (418)
                      ..+...-..-.. ......++.+...|++.++.+.-.|++++..+...+....     ..++..|..++.+. ++.+|-.
T Consensus       234 r~l~~~~~~d~~-~~~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l~~~~~~~~-----~~a~~~L~~fLss~-d~niryv  306 (355)
T 3tjz_B          234 RVASRQLEDEDG-SRDSPLFDFIESCLRNKHEMVVYEAASAIVNLPGCSAKEL-----APAVSVLQLFCSSP-KAALRYA  306 (355)
T ss_dssp             HHHTCC------------------CCCCCSSHHHHHHHHHHHTC----------------CCCTHHHHHHSS-SSSSHHH
T ss_pred             HHHHHhccccch-hhHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCCCHHHH-----HHHHHHHHHHHcCC-CchHHHH
Confidence            433321110000 0112345566666778899999999999888765222211     23456676777666 8889999


Q ss_pred             HHHHHHHHHhhCC
Q 014817          388 AQLLLKLLRDSWP  400 (418)
Q Consensus       388 A~~~L~~l~~~~~  400 (418)
                      |...|..+...++
T Consensus       307 aLr~L~~l~~~~P  319 (355)
T 3tjz_B          307 AVRTLNKVAMKHP  319 (355)
T ss_dssp             HHHCC--------
T ss_pred             HHHHHHHHHHHCc
Confidence            8888888877654

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.68  E-value=0.0022  Score=68.30  Aligned_cols=251  Identities=11%  Similarity=0.079  Sum_probs=159.2

Q ss_pred             HHHHHHHHHhhhcChh---hhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchH
Q 014817          122 LSALRRLRGLARDSDK---NRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKIT  198 (418)
Q Consensus       122 ~~Al~~L~~l~~~~~~---~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~  198 (418)
                      ..|+..+..++.....   .-..++  +.+|.++..+.+-       ...|++.|-.++..+...-  +...+  ...+|
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk-------~~~v~~aa~~~~~~~~~~~--~~~a~--~~~~~  136 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNK-------DKEIQSVASETLISIVNAV--NPVAI--KALLP  136 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCS-------SHHHHHHHHHHHHHHHHHS--CGGGH--HHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCC-------chHHHHHHHHHHHHHHHhC--CHHHH--HHHHH
Confidence            5677777777744321   112222  4567777666544       3567766665444332110  01111  45689


Q ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccH
Q 014817          199 SLSSLLFHS-SIEVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTR  276 (418)
Q Consensus       199 ~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~  276 (418)
                      .|+..|.++ ....+..|+.+|..|+   ...  ...++. -...||.+.+.+.+.  .+++.++|..++..+|..-+|+
T Consensus       137 ~~~~~~~~~~kw~~k~~~l~~~~~~~---~~~--~~~~~~~~~~~~p~~~~~~~d~--k~~v~~~~~~~~~~~~~~~~n~  209 (986)
T 2iw3_A          137 HLTNAIVETNKWQEKIAILAAFSAMV---DAA--KDQVALRMPELIPVLSETMWDT--KKEVKAAATAAMTKATETVDNK  209 (986)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHH---HHS--HHHHHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHGGGCCCT
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHH---HHh--HHHHHHhccchhcchHhhcccC--cHHHHHHHHHHHHHHHhcCCCc
Confidence            999999765 6999999999999994   222  344432 246888888888887  7999999999999999876665


Q ss_pred             HHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--
Q 014817          277 YKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS--  354 (418)
Q Consensus       277 ~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--  354 (418)
                      ..   ...+|.|++.+.+++.  +..++..|..-.--.+.-.-...  -.+|.|..-|...+...++.++-++-|||+  
T Consensus       210 d~---~~~~~~~~~~~~~p~~--~~~~~~~l~~~tfv~~v~~~~l~--~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv  282 (986)
T 2iw3_A          210 DI---ERFIPSLIQCIADPTE--VPETVHLLGATTFVAEVTPATLS--IMVPLLSRGLNERETGIKRKSAVIIDNMCKLV  282 (986)
T ss_dssp             TT---GGGHHHHHHHHHCTTH--HHHHHHHHTTCCCCSCCCHHHHH--HHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTC
T ss_pred             ch---hhhHHHHHHHhcChhh--hHHHHHHhhcCeeEeeecchhHH--HHHHHHHhhhccCcchhheeeEEEEcchhhhc
Confidence            32   3478999999987632  45555444432211111111110  123455555555677888999999999999  


Q ss_pred             CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          355 ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       355 ~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      .+|.....+ --..+|.|-.....-.+|++|+.|..++..|.+...
T Consensus       283 ~~~~~~~~f-~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~~~~  327 (986)
T 2iw3_A          283 EDPQVIAPF-LGKLLPGLKSNFATIADPEAREVTLRALKTLRRVGN  327 (986)
T ss_dssp             CCHHHHHHH-HTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHhhh-hhhhhhHHHHHhhccCCHHHHHHHHHHHHHHHHhhc
Confidence            777655542 233455555555555689999999999999987643

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.65  E-value=3.4e-05  Score=57.34  Aligned_cols=46  Identities=11%  Similarity=0.070  Sum_probs=39.3

Q ss_pred             cCcCccccccCCe-ecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817           19 RCPISLELMCDPV-TVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus        19 ~Cpi~~~~~~dPv-~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      .|++|.-++..=. ++||+|.||..|+..|.+++..+||.|+.++..
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r   49 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR   49 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence            4888888777665 669999999999999998888999999987653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.59  E-value=0.003  Score=66.62  Aligned_cols=202  Identities=14%  Similarity=0.095  Sum_probs=131.8

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhc-CCCHHHHHHHHHHHHHHHhc
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLF-HSSIEVRVNSAALIEIVLAG  225 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~  225 (418)
                      +++.|..+|.++       +..+.+.|+.+|+.+-.+. .      ...++..|+..+. ..+..++..++..|..+   
T Consensus       473 v~e~L~~~L~dd-------~~~~~~~AalALGli~vGT-g------n~~ai~~LL~~~~e~~~e~vrR~aalgLGll---  535 (963)
T 4ady_A          473 VYEALKEVLYND-------SATSGEAAALGMGLCMLGT-G------KPEAIHDMFTYSQETQHGNITRGLAVGLALI---  535 (963)
T ss_dssp             HHHHHHHHHHTC-------CHHHHHHHHHHHHHHHTTC-C------CHHHHHHHHHHHHHCSCHHHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHhcC-------CHHHHHHHHHHHhhhhccc-C------CHHHHHHHHHHHhccCcHHHHHHHHHHHHhh---
Confidence            467777777655       3455666666666542222 1      1234566666553 45788888888888877   


Q ss_pred             ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc-CCCcccHHHHH
Q 014817          226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA-DFDKCDAERAL  304 (418)
Q Consensus       226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~-~~~~~~~~~a~  304 (418)
                              .++. ...++.+++.|.... ++-++..++.++.--.....|..      +|+.|+..+. +.+..++..|+
T Consensus       536 --------~~g~-~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn~~------aIq~LL~~~~~d~~d~VRraAV  599 (963)
T 4ady_A          536 --------NYGR-QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGNNS------AVKRLLHVAVSDSNDDVRRAAV  599 (963)
T ss_dssp             --------TTTC-GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCCHH------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred             --------hCCC-hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCCHH------HHHHHHHHhccCCcHHHHHHHH
Confidence                    2333 346778888887653 67777777777765555555543      4566677665 44556778888


Q ss_pred             HHHHHHhcCHhHHHHHHhccCChHHHHHHHh-cCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHH
Q 014817          305 ATVELLCRIPAGCAEFAEHALTVPLLVKTIL-KISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDR  383 (418)
Q Consensus       305 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~  383 (418)
                      ..|..+...+.         ..++.++.++. +.++.++..|+.+|..++.+++.  .     .++..|..++ ++.++.
T Consensus       600 iaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~--~-----~aid~L~~L~-~D~d~~  662 (963)
T 4ady_A          600 IALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL--Q-----SAIDVLDPLT-KDPVDF  662 (963)
T ss_dssp             HHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC--H-----HHHHHHHHHH-TCSSHH
T ss_pred             HHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc--H-----HHHHHHHHHc-cCCCHH
Confidence            88887664332         34666776554 48999999999999999986653  1     1445555555 444888


Q ss_pred             HHHHHHHHHHHHHhh
Q 014817          384 AKRKAQLLLKLLRDS  398 (418)
Q Consensus       384 ~~~~A~~~L~~l~~~  398 (418)
                      +|+.|...|..+-.-
T Consensus       663 Vrq~Ai~ALG~Ig~g  677 (963)
T 4ady_A          663 VRQAAMIALSMILIQ  677 (963)
T ss_dssp             HHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhcC
Confidence            998888888877653

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.41  E-value=0.00017  Score=51.47  Aligned_cols=46  Identities=15%  Similarity=0.329  Sum_probs=37.5

Q ss_pred             ccCcCccccccCCeec-CCCCcccHHHHHHHHHc-CCCCCCCCCCCCC
Q 014817           18 FRCPISLELMCDPVTV-CTGQTYDRPSIESWVAT-GNTTCPVTRSPLT   63 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~-~~~~cp~~~~~l~   63 (418)
                      -.|.||.+++..=..- .|||.|=..||.+|++. +..+||.|+....
T Consensus        16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~   63 (74)
T 2ct0_A           16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP   63 (74)
T ss_dssp             CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred             CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence            4799999999744433 69999999999999975 2478999998865

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.38  E-value=0.016  Score=48.52  Aligned_cols=182  Identities=14%  Similarity=0.074  Sum_probs=128.8

Q ss_pred             cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817          193 DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV  272 (418)
Q Consensus       193 ~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~  272 (418)
                      +..++..++..|..+-..++.+|..+|..++  ...+   +.+   .-.+..|+-|++... .........+++..++.-
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~--~~~~---el~---epl~~kL~vm~~ksE-aIpltqeIa~a~G~la~i  100 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIA--KTRE---DLY---EPMLKKLFSLLKKSE-AIPLTQEIAKAFGQMAKE  100 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH--TTCG---GGH---HHHHHHHHHHHHHCC-SHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHH--HHhH---HHH---HHHHHHHHHHHhhcc-cCchHHHHHHHHhHHHHh
Confidence            4567899999999998999999999999994  2222   233   236778888887663 567777888888888754


Q ss_pred             cccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 014817          273 KQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAA  351 (418)
Q Consensus       273 ~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~  351 (418)
                      ....   + .+.||.|..-..-+++.++.+...+|..++. +++--..+++      -+..++.+.+..-+..|+..+..
T Consensus       101 ~Pe~---v-~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~r------di~smltskd~~Dkl~aLnFi~a  170 (253)
T 2db0_A          101 KPEL---V-KSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVR------DFMSMLSSKNREDKLTALNFIEA  170 (253)
T ss_dssp             CHHH---H-HHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHH------HHHHHTSCSSHHHHHHHHHHHHT
T ss_pred             CHHH---H-HhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHH------HHHHHhcCCChHHHHHHHHHHHH
Confidence            3321   1 1366777777777899999999999998884 5655544444      35555666665556666666655


Q ss_pred             HhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          352 LCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       352 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      +.....+..     .-.++.|..+|... +.-+|..|..+|-+++...
T Consensus       171 lGen~~~yv-----~PfLprL~aLL~D~-deiVRaSaVEtL~~lA~~n  212 (253)
T 2db0_A          171 MGENSFKYV-----NPFLPRIINLLHDG-DEIVRASAVEALVHLATLN  212 (253)
T ss_dssp             CCTTTHHHH-----GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHHTSC
T ss_pred             HhccCcccc-----CcchHHHHHHHcCc-chhhhHHHHHHHHHHHHcC
Confidence            554333332     23788888888666 9999999999999998753

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.36  E-value=0.016  Score=61.17  Aligned_cols=245  Identities=11%  Similarity=0.060  Sum_probs=149.5

Q ss_pred             HHHHHHHhhcC-CCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccC-CChhHHHHHHHHHhcCC
Q 014817          104 VRTLLNQASSE-SNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTA-SSPELAHESLALLVMFP  181 (418)
Q Consensus       104 i~~lv~~L~~~-~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~-~~~~v~~~a~~~L~~l~  181 (418)
                      +..|-++|... +.+...+-.|+-.|..+..+...        .++..|...|.++....+. .++.++..|+-.|+...
T Consensus       394 l~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--------~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~  465 (963)
T 4ady_A          394 KKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--------DTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAA  465 (963)
T ss_dssp             HHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--------HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--------HHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHh
Confidence            34444444421 22334456677777766554321        1467777777655200000 01456777777777654


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV  261 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  261 (418)
                      .+. .      +..+++.|..+|...+..++..|+.+|..+   .....      . ..++..|+..+.+.. +..+++.
T Consensus       466 ~GS-~------~eev~e~L~~~L~dd~~~~~~~AalALGli---~vGTg------n-~~ai~~LL~~~~e~~-~e~vrR~  527 (963)
T 4ady_A          466 MGS-A------NIEVYEALKEVLYNDSATSGEAAALGMGLC---MLGTG------K-PEAIHDMFTYSQETQ-HGNITRG  527 (963)
T ss_dssp             TTC-C------CHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCC------C-HHHHHHHHHHHHHCS-CHHHHHH
T ss_pred             cCC-C------CHHHHHHHHHHHhcCCHHHHHHHHHHHhhh---hcccC------C-HHHHHHHHHHHhccC-cHHHHHH
Confidence            433 1      124578888999888777777777787777   22111      1 346677777665543 6788889


Q ss_pred             HHHHHHHHccccccHHHHHHcCchHHHHHHhcC-CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CCh
Q 014817          262 GIKALFALCLVKQTRYKAVAAGAAETLVDRLAD-FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISD  339 (418)
Q Consensus       262 a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~  339 (418)
                      ++.+|.-+....+.        .++.+++.|.. .++.++..++.++..-.....+.       .+|..|++.+.+ .+.
T Consensus       528 aalgLGll~~g~~e--------~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~-------~aIq~LL~~~~~d~~d  592 (963)
T 4ady_A          528 LAVGLALINYGRQE--------LADDLITKMLASDESLLRYGGAFTIALAYAGTGNN-------SAVKRLLHVAVSDSND  592 (963)
T ss_dssp             HHHHHHHHTTTCGG--------GGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCH-------HHHHHHHHHHHHCSCH
T ss_pred             HHHHHHhhhCCChH--------HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHhccCCcH
Confidence            99999888655442        56677887764 45555566665555322211111       124445555543 678


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          340 RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       340 ~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      .+++.|+.+|..|..+++         ..++.++.+|...+++.+|+.|+.+|..+...
T Consensus       593 ~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aG  642 (963)
T 4ady_A          593 DVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAG  642 (963)
T ss_dssp             HHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSS
T ss_pred             HHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccC
Confidence            899999999998887664         24566777665555999999999999988643

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.26  E-value=0.00036  Score=47.62  Aligned_cols=47  Identities=19%  Similarity=0.322  Sum_probs=38.9

Q ss_pred             cccCcCccccccCCeecCCCC-----cccHHHHHHHHH-cCCCCCCCCCCCCC
Q 014817           17 HFRCPISLELMCDPVTVCTGQ-----TYDRPSIESWVA-TGNTTCPVTRSPLT   63 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~~~g~-----~~~r~~i~~~~~-~~~~~cp~~~~~l~   63 (418)
                      .-.|.||.+-..+|.+.||..     .|=+.|+.+|+. .++.+||+|+..+.
T Consensus         6 ~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            6 VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            346999999888898888653     688999999997 45788999998775

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=97.18  E-value=0.019  Score=54.10  Aligned_cols=207  Identities=10%  Similarity=0.013  Sum_probs=128.2

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGM  226 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s  226 (418)
                      +...+++++.+.       +.+.++-..-.+.+++...++   .+   -++..|.+=++++++-+|..|.++|.++   .
T Consensus        69 lf~~v~kl~~s~-------d~~lKrLvYLyl~~~~~~~~e---~i---Lv~Nsl~kDl~~~N~~iR~lALRtL~~I---~  132 (355)
T 3tjz_B           69 AFFAMTKLFQSN-------DPTLRRMCYLTIKEMSCIAED---VI---IVTSSLTKDMTGKEDSYRGPAVRALCQI---T  132 (355)
T ss_dssp             HHHHHHGGGGCC-------CHHHHHHHHHHHHHHTTTSSC---GG---GGHHHHHHHHHSSCHHHHHHHHHHHHHH---C
T ss_pred             HHHHHHHHhcCC-------CHHHHHHHHHHHHHhCCCHHH---HH---HHHHHHHhhcCCCcHhHHHHHHHHHhcC---C
Confidence            345566777776       466666665566666544212   11   3577788888999999999999999999   3


Q ss_pred             cchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHH
Q 014817          227 RSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALAT  306 (418)
Q Consensus       227 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~  306 (418)
                      .. +    +.  ....+.+.+.|.+.  ++-+++.|+-+..+|......   +++ +.+..+-+++.+.++.++.+|+.+
T Consensus       133 ~~-~----m~--~~l~~~lk~~L~d~--~pyVRk~A~l~~~kL~~~~pe---~v~-~~~~~l~~ll~d~n~~V~~~Al~l  199 (355)
T 3tjz_B          133 DS-T----ML--QAIERYMKQAIVDK--VPSVSSSALVSSLHLLKCSFD---VVK-RWVNEAQEAASSDNIMVQYHALGL  199 (355)
T ss_dssp             CT-T----TH--HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHTTTCHH---HHH-TTHHHHHHHTTCSSHHHHHHHHHH
T ss_pred             CH-H----HH--HHHHHHHHHHcCCC--CHHHHHHHHHHHHHHhccCHH---HHH-HHHHHHHHHhcCCCccHHHHHHHH
Confidence            32 2    22  24677788888888  899999999999999765433   233 688999999998888999999999


Q ss_pred             HHHHhcCHhHHHHHHhccCChHHHHHHHhcC---ChHHHHHHHHHHHHHhcCC-HHHHHHHHhcChHHHHHHHHhhCCCH
Q 014817          307 VELLCRIPAGCAEFAEHALTVPLLVKTILKI---SDRATEYAAGALAALCSAS-ERCQRDAVSAGVLTQLLLLVQSDCTD  382 (418)
Q Consensus       307 L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~---~~~~~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~  382 (418)
                      |..+...+.         ..+..++..+..+   ++-.+-.-++.+..++.++ ++.     ....++.|...|++. ++
T Consensus       200 L~ei~~~d~---------~a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~-----~~~~~~~l~~~L~~~-~~  264 (355)
T 3tjz_B          200 LYHVRKNDR---------LAVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDEDGSR-----DSPLFDFIESCLRNK-HE  264 (355)
T ss_dssp             HHHHHTTCH---------HHHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----------------------CCCCCS-SH
T ss_pred             HHHHHhhch---------HHHHHHHHHHhcCCCcChHHHHHHHHHHHHhccccchhh-----HHHHHHHHHHHHcCC-Ch
Confidence            999986431         1234455555442   3333333333333333333 221     234555565556555 77


Q ss_pred             HHHHHHHHHHHHHHh
Q 014817          383 RAKRKAQLLLKLLRD  397 (418)
Q Consensus       383 ~~~~~A~~~L~~l~~  397 (418)
                      .+.-.|++++-.+..
T Consensus       265 aVvyEa~k~I~~l~~  279 (355)
T 3tjz_B          265 MVVYEAASAIVNLPG  279 (355)
T ss_dssp             HHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHHhccC
Confidence            777777777776655

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.09  E-value=0.032  Score=59.39  Aligned_cols=261  Identities=8%  Similarity=0.023  Sum_probs=168.6

Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817          104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT  183 (418)
Q Consensus       104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~  183 (418)
                      +..+++.+..++  ...+..|...+..+...+...  .....++++.|.+.+..-.      +.   +.|+.++..|+..
T Consensus        16 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~k~------~~---~~a~~~~~~~~~~   82 (986)
T 2iw3_A           16 LEELFQKLSVAT--ADNRHEIASEVASFLNGNIIE--HDVPEHFFGELAKGIKDKK------TA---ANAMQAVAHIANQ   82 (986)
T ss_dssp             HHHHHHHHTTCC--TTTHHHHHHHHHHHHTSSCSS--SSCCHHHHHHHHHHHTSHH------HH---HHHHHHHHHHTCT
T ss_pred             HHHHHhhccccc--hhHHHHHHHHHHHHHhccccc--cccchhHHHHHHHHHhccC------CH---HHHHHHHHHHHHh
Confidence            344556565543  223567788888876543221  1222467788888876542      12   7777777777643


Q ss_pred             hh---HHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817          184 ET---ECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK  260 (418)
Q Consensus       184 ~~---~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  260 (418)
                      ..   ..-..++  +.++.++....+....+|..|..++..+.. ..+..   .+   ..++|.|+..|.+.. ....+.
T Consensus        83 ~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~-~~~~~---a~---~~~~~~~~~~~~~~~-kw~~k~  152 (986)
T 2iw3_A           83 SNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVN-AVNPV---AI---KALLPHLTNAIVETN-KWQEKI  152 (986)
T ss_dssp             TTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHH-HSCGG---GH---HHHHHHHHHHHHHCC-CHHHHH
T ss_pred             cCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHH-hCCHH---HH---HHHHHHHHHHhcccc-chHHHH
Confidence            31   1111221  467778888777778899988888888842 12222   22   358999999998763 589999


Q ss_pred             HHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChH
Q 014817          261 VGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDR  340 (418)
Q Consensus       261 ~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~  340 (418)
                      .|+.+|..|+..........=...||.+-+.+-+..+++...|..++..+|..-.|+..    ...||.|++.|.+.+. 
T Consensus       153 ~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p~~-  227 (986)
T 2iw3_A          153 AILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADPTE-  227 (986)
T ss_dssp             HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCTTH-
T ss_pred             HHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcChhh-
Confidence            99999999986542222222246788888888888889999999999988853333321    3678999999987643 


Q ss_pred             HHHHHHHHHHHHhc---CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          341 ATEYAAGALAALCS---ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       341 ~~~~A~~~L~~l~~---~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                       ...++..|..-+.   -+......     .+|.|.+-|... +...+|+++-++.||++.=
T Consensus       228 -~~~~~~~l~~~tfv~~v~~~~l~~-----~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~lv  282 (986)
T 2iw3_A          228 -VPETVHLLGATTFVAEVTPATLSI-----MVPLLSRGLNER-ETGIKRKSAVIIDNMCKLV  282 (986)
T ss_dssp             -HHHHHHHHTTCCCCSCCCHHHHHH-----HHHHHHHHHTSS-SHHHHHHHHHHHHHHHTTC
T ss_pred             -hHHHHHHhhcCeeEeeecchhHHH-----HHHHHHhhhccC-cchhheeeEEEEcchhhhc
Confidence             3334444444332   12222222     456677777555 8889999999999999863

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=96.91  E-value=0.23  Score=48.14  Aligned_cols=238  Identities=13%  Similarity=0.158  Sum_probs=147.0

Q ss_pred             cChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChh---HHHhhcc-cCCchHHHHHHhcCCCHHHH-HHHHHHH
Q 014817          145 HNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTET---ECMEIAS-DADKITSLSSLLFHSSIEVR-VNSAALI  219 (418)
Q Consensus       145 ~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~---~~~~~i~-~~g~i~~Lv~~L~~~~~~~~-~~a~~~L  219 (418)
                      ..++..++.+|....      +.++....+..+.-+...+.   ..-..+. .+.....+.....+.+.... ..+..++
T Consensus        76 ~~~~~~~l~lL~~~~------~~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~  149 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSD------NEDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVV  149 (480)
T ss_dssp             STTHHHHHHHHHSCC------CHHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHhhcC------hHHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHH
Confidence            456788999998764      67788888877776554442   2222222 23333334443333344444 4455444


Q ss_pred             HHHHhcccchhhhhHhhchhhhHHH------HHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcC--chHHHHHH
Q 014817          220 EIVLAGMRSQELRAQISNLDEIFEG------VIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAG--AAETLVDR  291 (418)
Q Consensus       220 ~~L~~~s~~~~~~~~i~~~~g~i~~------Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G--~v~~Lv~l  291 (418)
                      ..+   ..... .    . ...++.      +...|.... +...+..++.+|..|...++.|..+.+++  .++.++.+
T Consensus       150 ~ll---~~~~~-~----~-~~~l~~l~~~~~~~~~L~~~~-~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~i  219 (480)
T 1ho8_A          150 SLL---VQNGL-H----N-VKLVEKLLKNNNLINILQNIE-QMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKI  219 (480)
T ss_dssp             HHH---TSTTT-C----C-HHHHHHHHHCHHHHHHHHCTT-CHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHH
T ss_pred             HHH---hccCC-c----c-HhHHHHHhhhHHHHHHhcccc-CCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHH
Confidence            555   21111 1    1 223333      444555531 34556689999999999999999998754  47777665


Q ss_pred             hcC---------------CC--cccHHHHHHHHHHHhcCHhHHHHHHhccCCh--HHHHHHHhc-CChHHHHHHHHHHHH
Q 014817          292 LAD---------------FD--KCDAERALATVELLCRIPAGCAEFAEHALTV--PLLVKTILK-ISDRATEYAAGALAA  351 (418)
Q Consensus       292 L~~---------------~~--~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i--~~Lv~~l~~-~~~~~~~~A~~~L~~  351 (418)
                      +..               +.  ..++-.++-++..|+-+++..+.+..+ +..  +.|+.+++. ..+++.+-++.+|.|
T Consensus       220 l~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~-~i~~~~~L~~i~k~s~KEKvvRv~la~l~N  298 (480)
T 1ho8_A          220 LQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQK-YLSDFLDLLKLVKITIKEKVSRLCISIILQ  298 (480)
T ss_dssp             HHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTT-SHHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred             HHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhc-chHHHHHHHHHHHhhccchhHHHHHHHHHH
Confidence            541               11  234678899999999999888888764 533  566676765 668899999999999


Q ss_pred             HhcCC----HHHHH-HHHhcChHHHHHHHHhh--CCCHHHHHHHHHHHHHHHhhCC
Q 014817          352 LCSAS----ERCQR-DAVSAGVLTQLLLLVQS--DCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       352 l~~~~----~~~~~-~~~~~g~i~~L~~ll~~--~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      +...+    ..... .+...++ .+++..|+.  ..++.+.+--..+...|.+..+
T Consensus       299 ll~~~~~~~~~~~~~~~~~~~~-l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~  353 (480)
T 1ho8_A          299 CCSTRVKQHKKVIKQLLLLGNA-LPTVQSLSERKYSDEELRQDISNLKEILENEYQ  353 (480)
T ss_dssp             TTSSSSTTHHHHHHHHHHHHCH-HHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcccchhhhhHHHHHHHHccc-hHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHH
Confidence            88743    23333 3444556 445677753  4578888887777777776543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.83  E-value=0.0079  Score=55.50  Aligned_cols=192  Identities=11%  Similarity=0.068  Sum_probs=112.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchh---hhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc
Q 014817          198 TSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLD---EIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ  274 (418)
Q Consensus       198 ~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~---g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~  274 (418)
                      ..+.+++ +-+.+.+--+..+++-+   ..++.....+....   .++..+...+.... .+..+--+++++.|+..+..
T Consensus       106 ~~l~kil-~WP~~~~fPvLDLlRl~---~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~-~p~n~ml~lR~l~NlF~~~~  180 (304)
T 3ebb_A          106 QILWKAI-NCPEDIVFPALDILRLS---IKHPSVNENFCNEKEGAQFSSHLINLLNPKG-KPANQLLALRTFCNCFVGQA  180 (304)
T ss_dssp             HHHHHHH-TSCTTTCHHHHHHHHHH---TTSHHHHHHHHSTTTHHHHHHHHHHTTCTTS-CHHHHHHHHHHHHHGGGSHH
T ss_pred             HHHHHHH-cCCHHhHHHHHHHHHHH---HcCccHHHHhhccccchHHHHHHHHhcCCCC-ChHHHHHHHHHHHHccCCch
Confidence            3444443 33344444455555555   44444444443211   12323334443332 56678889999999999988


Q ss_pred             cHHHHHHc--CchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHH
Q 014817          275 TRYKAVAA--GAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAA  351 (418)
Q Consensus       275 n~~~i~~~--G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~  351 (418)
                      .+..+.+.  -+++.+...+.+.+..++..+..++.|++.........-+....+..+..++.. .+.+..-.++.+|.+
T Consensus       181 g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGt  260 (304)
T 3ebb_A          181 GQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGT  260 (304)
T ss_dssp             HHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Confidence            88777652  233444444445567788888889999995321000000000122334444433 577788888888899


Q ss_pred             HhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817          352 LCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL  394 (418)
Q Consensus       352 l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  394 (418)
                      +...+++..+.....|+...+-.+.+....+++.+.|..+|..
T Consensus       261 L~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~  303 (304)
T 3ebb_A          261 LISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL  303 (304)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred             HHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence            8887777777766777777666666554478888888887753

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.022  Score=51.81  Aligned_cols=192  Identities=11%  Similarity=0.061  Sum_probs=116.4

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh-chhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-
Q 014817          197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS-NLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-  274 (418)
Q Consensus       197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-  274 (418)
                      +| |-.-|.+.+...|..|...|..+......+....... .....++.+-..+.+.  +..++..++.+|..++..-. 
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds--N~~v~~~al~~l~~~~~~~~~   88 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS--NVVAQEQAIVALNSLIDAFAS   88 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS--SHHHHHHHHHHHHHHHTTCC-
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHhhh
Confidence            44 5678889999999999999988742111111111111 1112345556677666  89999999999998875321 


Q ss_pred             ---cHH--HHHHcCchHHHHHH-hcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHH
Q 014817          275 ---TRY--KAVAAGAAETLVDR-LADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGA  348 (418)
Q Consensus       275 ---n~~--~i~~~G~v~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~  348 (418)
                         .+.  ...-...++.|++- |.+....++..+..+|..++........      .+..++..+.+.++.++..++..
T Consensus        89 ~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l~~  162 (278)
T 4ffb_C           89 SSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAANC  162 (278)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHHHH
T ss_pred             hhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHHHH
Confidence               122  22234577888875 6676777888888888766532111111      12334445667899999999888


Q ss_pred             HHHHhc--CCHHH-HHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          349 LAALCS--ASERC-QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       349 L~~l~~--~~~~~-~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      |..+..  +.... ....+ ..+++.+..++.+. ++.+|..|..++-.+.++-
T Consensus       163 l~~~l~~fg~~~~~~k~~l-~~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          163 VYELMAAFGLTNVNVQTFL-PELLKHVPQLAGHG-DRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHHHHTTTTCCHHHHH-HHHGGGHHHHHTCS-SHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHhCCCcCCchhHH-HHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHh
Confidence            888654  21110 01000 12344555666556 9999999999998887754

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=96.41  E-value=0.041  Score=59.24  Aligned_cols=221  Identities=9%  Similarity=0.069  Sum_probs=126.3

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhccc----CCchHH----HHHHhcCC---CHHHHHHHHHHHHHHHhcccchhhhhH
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASD----ADKITS----LSSLLFHS---SIEVRVNSAALIEIVLAGMRSQELRAQ  234 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~----~g~i~~----Lv~~L~~~---~~~~~~~a~~~L~~L~~~s~~~~~~~~  234 (418)
                      +...++.|+.+++.++.........+..    ....+.    ++..|++.   ++-+|..|+++|..+   +..- ....
T Consensus       418 ~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~---~~~~-~~~~  493 (960)
T 1wa5_C          418 NWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTF---RNQL-TKAQ  493 (960)
T ss_dssp             CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHT---GGGS-CHHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHH---HhhC-CHHH
Confidence            4567888888888775321001101100    022232    33345555   899999999999999   4321 1222


Q ss_pred             hhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc---------cHHHHHH--cCchHHHHHHhcCCC-----cc
Q 014817          235 ISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ---------TRYKAVA--AGAAETLVDRLADFD-----KC  298 (418)
Q Consensus       235 i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~---------n~~~i~~--~G~v~~Lv~lL~~~~-----~~  298 (418)
                      +   ..+++.++..|.+.  ++.++..|+.||.+++...+         .+..+..  ...++.|+.++....     ..
T Consensus       494 l---~~~l~~l~~~L~d~--~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~  568 (960)
T 1wa5_C          494 L---IELMPILATFLQTD--EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA  568 (960)
T ss_dssp             H---HHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred             H---HHHHHHHHHHhCCC--ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence            2   45788899988876  79999999999999987422         2222321  235566666666531     11


Q ss_pred             cHHHHHHHHHHHhcCH-hHHHHHHhccCChHHHHHHHhc-----CChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHH
Q 014817          299 DAERALATVELLCRIP-AGCAEFAEHALTVPLLVKTILK-----ISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQ  371 (418)
Q Consensus       299 ~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~~-----~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~  371 (418)
                      ..+.++.+|..++..- +.-.....  ..++.|+..+..     .++........+|..++.. +++... -....+++.
T Consensus       569 ~~e~l~~al~~vv~~~~~~~~p~~~--~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~  645 (960)
T 1wa5_C          569 ENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPT  645 (960)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHH
Confidence            3356666666655311 11011111  123344444432     3555666677777777763 333222 234557788


Q ss_pred             HHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          372 LLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       372 L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      +..+|+.. .....+.+..++..+....
T Consensus       646 ~~~iL~~~-~~~~~~~~~~i~~~l~~~~  672 (960)
T 1wa5_C          646 FLTVFSED-IQEFIPYVFQIIAFVVEQS  672 (960)
T ss_dssp             HHHHHHTT-CTTTHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhh-hHhhHHHHHHHHHHHHHhc
Confidence            88888765 4456666777777777664

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.40  E-value=0.034  Score=54.74  Aligned_cols=250  Identities=10%  Similarity=0.071  Sum_probs=152.8

Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChh--hhhHHhhcChHHHHHHHhhcc--ccccc-CCChhHHHHHHHHHh
Q 014817          104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDK--NRSLISSHNVRAILSQVFFTN--INVKT-ASSPELAHESLALLV  178 (418)
Q Consensus       104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~--~~~~i~~~g~i~~Lv~lL~~~--~~~~~-~~~~~v~~~a~~~L~  178 (418)
                      .+.|+..|-++  ..+.|=.|+-+||++.+....  .|..-......-.|+-+|.-+  .++.+ ..-..|+|.++.+|+
T Consensus       176 cE~L~~DLFdp--~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLG  253 (800)
T 3oc3_A          176 FEQISDNLLSY--EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLS  253 (800)
T ss_dssp             THHHHHHTTCS--SHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHH
T ss_pred             HHHHHHHhcCc--chhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHH
Confidence            34555555443  677777899999998765432  121001112233333333211  11111 113568999988888


Q ss_pred             cCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817          179 MFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRG  258 (418)
Q Consensus       179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  258 (418)
                      .+ ..-++.      ..++..|+..+.....+++..+.-.|+++   .      +.+..-.++++.++.-|.+.  +.++
T Consensus       254 aL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL---~------DLL~~Ld~Vv~aVL~GL~D~--DDDV  315 (800)
T 3oc3_A          254 RI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL---K------EFVEDKDGLCRKLVSLLSSP--DEDI  315 (800)
T ss_dssp             HH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT---G------GGCCCHHHHHHHHHHHTTCS--SHHH
T ss_pred             HH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH---H------HHHHHHHHHHHHHHhhcCCc--ccHH
Confidence            76 443221      35566666666778899999999999888   1      11111367899999999988  8999


Q ss_pred             hHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCC-c-ccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc
Q 014817          259 LKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFD-K-CDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK  336 (418)
Q Consensus       259 ~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~-~-~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~  336 (418)
                      +..|+.+|.-++ ..+...     .++..+.+.|.+-| - ......+.+|+.|+..+..   .......||.|...+++
T Consensus       316 RAVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRH  386 (800)
T 3oc3_A          316 KLLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTS  386 (800)
T ss_dssp             HHHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTC
T ss_pred             HHHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcC
Confidence            999999999999 211111     24455556665432 2 3345667788887765531   12223678888888888


Q ss_pred             CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHH
Q 014817          337 ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLK  393 (418)
Q Consensus       337 ~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  393 (418)
                      .-..++..++.+|..+.  +..         ++..+.+-+--..++.+++.+..+.+
T Consensus       387 tITSVR~AVL~TL~tfL--~~~---------~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          387 PVPEVRTSILNMVKNLS--EES---------IDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             SSHHHHHHHHHHTTTCC--CHH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHH--hhh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            99999999999988876  222         22222222222337888887777765

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.23  E-value=0.23  Score=43.92  Aligned_cols=238  Identities=18%  Similarity=0.086  Sum_probs=147.0

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHh-hcChHHHHHHHhhccccc-c--cCC--ChhHHHHHHH
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLIS-SHNVRAILSQVFFTNINV-K--TAS--SPELAHESLA  175 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~-~--~~~--~~~v~~~a~~  175 (418)
                      +.+..++..|..++    .|..|+..|.+--..-+.-...+- .-|.+..|++=+-+-... .  .-.  ...=..+|+.
T Consensus         3 ~~i~qli~~L~~p~----~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLa   78 (268)
T 2fv2_A            3 EKIYQWINELSSPE----TRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALA   78 (268)
T ss_dssp             HHHHHHHHHTSSTT----THHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCch----hHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHH
Confidence            35666777776542    367777777664332233333332 257777776443222110 0  000  0111356777


Q ss_pred             HHhcCCCChhHHHhhcccCCchHHHHHHhcCCC-----HHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh
Q 014817          176 LLVMFPLTETECMEIASDADKITSLSSLLFHSS-----IEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK  250 (418)
Q Consensus       176 ~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~-----~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~  250 (418)
                      .|..++.+. +.|..+.++...--|-.+|+..+     ...|-.+.++++.|+. ..+.+.-..+-. .++||..++.++
T Consensus        79 LlQcvAshp-etr~~Fl~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK-~dd~eVi~fLL~-tEiiplCLrime  155 (268)
T 2fv2_A           79 LLQCVASHP-ETRSAFLAAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVK-TDEQEVINFLLT-TEIIPLCLRIME  155 (268)
T ss_dssp             HHHHHHHCT-TTHHHHHHTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGG-GCCHHHHHHHHH-TTHHHHHHHHHH
T ss_pred             HHHHHHcCc-chhhHHHHccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhc-cCcHHHHHHHHh-hhHHHHHHHHHh
Confidence            777777766 78999999887777777776543     6778899999999953 233333333323 569999999999


Q ss_pred             cCCCChhhhHHHHHHHHHHccccccHHHHHH--------cCchHHHHHHh-cCCCcccHHHHHHHHHHHhcCHhHHHHHH
Q 014817          251 NLSSYPRGLKVGIKALFALCLVKQTRYKAVA--------AGAAETLVDRL-ADFDKCDAERALATVELLCRIPAGCAEFA  321 (418)
Q Consensus       251 ~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~--------~G~v~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~  321 (418)
                      .+  ++-.+..|.-.+..+-.++....-+..        ..++..++.-+ .+++..+.+..+.+-..|+.++..|+++.
T Consensus       156 ~G--selSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~rar~aL~  233 (268)
T 2fv2_A          156 SG--SELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRAREALR  233 (268)
T ss_dssp             HS--CHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             hc--cHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99  788888888888888766654333321        12333444433 35677888999999999999999999887


Q ss_pred             hc------cCChHHHHHHHhcCChHHHHHHHHHHHHH
Q 014817          322 EH------ALTVPLLVKTILKISDRATEYAAGALAAL  352 (418)
Q Consensus       322 ~~------~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l  352 (418)
                      ..      .|....+    ..+++..+++=...+.|+
T Consensus       234 ~~LP~~Lrd~tf~~~----l~~D~~~k~~l~qLl~n~  266 (268)
T 2fv2_A          234 QCLPDQLKDTTFAQV----LKDDTTTKRWLAQLVKNL  266 (268)
T ss_dssp             HHSCGGGTSSTTHHH----HTSCHHHHHHHHHHHHHS
T ss_pred             HhCcHHhhChHHHHH----HhcCHHHHHHHHHHHHhc
Confidence            63      1221111    225666666665555554

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.19  E-value=0.0022  Score=48.81  Aligned_cols=33  Identities=15%  Similarity=0.145  Sum_probs=28.7

Q ss_pred             CcccCcCccc-cccCCee--cCCCCcccHHHHHHHH
Q 014817           16 YHFRCPISLE-LMCDPVT--VCTGQTYDRPSIESWV   48 (418)
Q Consensus        16 ~~~~Cpi~~~-~~~dPv~--~~~g~~~~r~~i~~~~   48 (418)
                      +++.|+||.+ ++++||.  +.|||+||+.|++.+.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH   37 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence            4578999996 5899999  8999999999999943

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.15  E-value=0.26  Score=45.25  Aligned_cols=169  Identities=12%  Similarity=0.004  Sum_probs=102.5

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHH-HhhcccccccCCChhHHHHHHHHHhcC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQ-VFFTNINVKTASSPELAHESLALLVMF  180 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~~~~v~~~a~~~L~~l  180 (418)
                      .++..+.+.++.+.   +.++-+++.+|-++. ++.....+.+.+.-..++. ++..-.. .  ..+..+-.++.++.|+
T Consensus       103 ~~l~~l~kil~WP~---~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~-~--~~p~n~ml~lR~l~Nl  175 (304)
T 3ebb_A          103 QQLQILWKAINCPE---DIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNP-K--GKPANQLLALRTFCNC  175 (304)
T ss_dssp             HHHHHHHHHHTSCT---TTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCT-T--SCHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHcCCH---HhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCC-C--CChHHHHHHHHHHHHc
Confidence            45555555553332   245777888777665 4555555554333334442 2221110 0  1455678888999999


Q ss_pred             CCChhHHHhhccc--CCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhh
Q 014817          181 PLTETECMEIASD--ADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRG  258 (418)
Q Consensus       181 ~~~~~~~~~~i~~--~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  258 (418)
                      ..+. ..+..+..  ...++.+...+.+.+..++..++.++.|++  ...-..+ ..-....++..+..+++... +.++
T Consensus       176 F~~~-~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlA--v~~~~~~-~~~~~~~ll~~l~~il~~~~-d~Ea  250 (304)
T 3ebb_A          176 FVGQ-AGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYS--VCFHKDH-NIEGKAQCLSLISTILEVVQ-DLEA  250 (304)
T ss_dssp             GGSH-HHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHH--HHHHHSC-CHHHHHHHHHHHHHHHTTCC-CHHH
T ss_pred             cCCc-hhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHH--HHHhhcC-CchHHHHHHHHHHHHHhccC-CHHH
Confidence            8777 56776653  234555565666678999999999999995  2211111 11111225556666676554 7899


Q ss_pred             hHHHHHHHHHHccccccHHHHHHc
Q 014817          259 LKVGIKALFALCLVKQTRYKAVAA  282 (418)
Q Consensus       259 ~~~a~~aL~~L~~~~~n~~~i~~~  282 (418)
                      ...++.||.+|...+.....+.+.
T Consensus       251 lyR~LvALGtL~~~~~~~~~lak~  274 (304)
T 3ebb_A          251 TFRLLVALGTLISDDSNAVQLAKS  274 (304)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChhHHHHHHH
Confidence            999999999999776666666554

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.09  E-value=0.0016  Score=60.01  Aligned_cols=47  Identities=23%  Similarity=0.507  Sum_probs=37.3

Q ss_pred             cccCcCccccccC----Cee----cCCCCcccHHHHHHHHHcC-C---------CCCCCCCCCCC
Q 014817           17 HFRCPISLELMCD----PVT----VCTGQTYDRPSIESWVATG-N---------TTCPVTRSPLT   63 (418)
Q Consensus        17 ~~~Cpi~~~~~~d----Pv~----~~~g~~~~r~~i~~~~~~~-~---------~~cp~~~~~l~   63 (418)
                      ..-|+||...+.+    |-.    ..|||.|-..||.+|+... .         +.||.|+++++
T Consensus       308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            3479999999987    433    3699999999999999741 1         46999998764

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=95.87  E-value=0.0068  Score=56.64  Aligned_cols=63  Identities=19%  Similarity=0.245  Sum_probs=52.2

Q ss_pred             cccCcCccccccCCeec-CCCCc--ccHHHHHHHHH-cCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 014817           17 HFRCPISLELMCDPVTV-CTGQT--YDRPSIESWVA-TGNTTCPVTRSPLTDFTLIPNHTLRRLIQD   79 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~-~~g~~--~~r~~i~~~~~-~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~   79 (418)
                      .+.||+++..|+.|+-- .|.|.  |+...+-.... .+.-.||+|.+.+...++..+.-+.++++.
T Consensus       249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~  315 (371)
T 3i2d_A          249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN  315 (371)
T ss_dssp             ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred             eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence            47999999999999977 69997  98888877654 345679999999999999888877776543

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.79  E-value=0.11  Score=47.10  Aligned_cols=185  Identities=13%  Similarity=0.102  Sum_probs=116.6

Q ss_pred             HHHHhhcCCCchhhhHHHHHHHHHhhhcChhh--hhH-Hhhc-ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          107 LLNQASSESNTYGSRLSALRRLRGLARDSDKN--RSL-ISSH-NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       107 lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~--~~~-i~~~-g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      |-++|.+.  +...|.+|+..|..+....+..  ... +... ...+.+-..+.+.       |..++..++.+|..++.
T Consensus        14 l~e~l~sk--~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-------N~~v~~~al~~l~~~~~   84 (278)
T 4ffb_C           14 LEERLTYK--LWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-------NVVAQEQAIVALNSLID   84 (278)
T ss_dssp             HHHHTTCS--SHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-------SHHHHHHHHHHHHHHHT
T ss_pred             HHHhcccC--cHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-------hHHHHHHHHHHHHHHHH
Confidence            44666654  6778899999999877543221  111 1112 2344555666544       78899998888775542


Q ss_pred             Ch--hH---HHhhcccCCchHHHHHH-hcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCCh
Q 014817          183 TE--TE---CMEIASDADKITSLSSL-LFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYP  256 (418)
Q Consensus       183 ~~--~~---~~~~i~~~g~i~~Lv~~-L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~  256 (418)
                      .-  ..   ......-...++.|+.- |.+....++..+..++..++   ....      ...-+++.++..+.+.  ++
T Consensus        85 ~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~---~~~~------~~~~~~e~l~~~l~~K--np  153 (278)
T 4ffb_C           85 AFASSSLKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLC---GLDT------SITQSVELVIPFFEKK--LP  153 (278)
T ss_dssp             TCC---CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHH---HTSS------SSHHHHHHHGGGGGCS--CH
T ss_pred             HhhhhhcccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH---HhcC------cHHHHHHHHHHHHhcc--CH
Confidence            11  01   11111224567778765 78888999999988888873   2111      1123566777778888  89


Q ss_pred             hhhHHHHHHHHHHcccc----ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc
Q 014817          257 RGLKVGIKALFALCLVK----QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR  312 (418)
Q Consensus       257 ~~~~~a~~aL~~L~~~~----~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~  312 (418)
                      .++..++..|..+...-    -+....+. .+++.+..+|.+.+..++..|..++..+-.
T Consensus       154 kv~~~~l~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          154 KLIAAAANCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHGDRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence            99999998888875331    12222222 356677888899999999999998887764

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=95.62  E-value=0.41  Score=42.30  Aligned_cols=142  Identities=13%  Similarity=0.139  Sum_probs=103.1

Q ss_pred             ChhhhHHHHHHHHHHccccccHHHHH--HcCchHHHHHHhcCC-----Ccc-------cHHHHHHHHHHHhcCHhHHHHH
Q 014817          255 YPRGLKVGIKALFALCLVKQTRYKAV--AAGAAETLVDRLADF-----DKC-------DAERALATVELLCRIPAGCAEF  320 (418)
Q Consensus       255 ~~~~~~~a~~aL~~L~~~~~n~~~i~--~~G~v~~Lv~lL~~~-----~~~-------~~~~a~~~L~~L~~~~~~~~~i  320 (418)
                      +++.++.|+.-|..=-..-++-..++  .-|.+..|++=+-+-     .+.       -+-+|+..|..+|.+++.|..+
T Consensus        14 ~p~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~F   93 (268)
T 2fv2_A           14 SPETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAF   93 (268)
T ss_dssp             STTTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHH
T ss_pred             CchhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHH
Confidence            45567766555554332223333333  358888877644321     111       2356888889999999999999


Q ss_pred             HhccCChHHHHHHHhcC-----ChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHH
Q 014817          321 AEHALTVPLLVKTILKI-----SDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKL  394 (418)
Q Consensus       321 ~~~~g~i~~Lv~~l~~~-----~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~  394 (418)
                      .. +...-.|...|...     -+-.+-.+++++..+.+ .+++...-..+.++++.+++.++.+ ++-.|-.|..+++.
T Consensus        94 l~-a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~G-selSKtvAtfIlqK  171 (268)
T 2fv2_A           94 LA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESG-SELSKTVATFILQK  171 (268)
T ss_dssp             HH-TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHH
T ss_pred             HH-ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhc-cHHHHHHHHHHHHH
Confidence            99 57766777777653     24567889999999998 7888888888999999999999888 99999999999887


Q ss_pred             HHhh
Q 014817          395 LRDS  398 (418)
Q Consensus       395 l~~~  398 (418)
                      +-..
T Consensus       172 IL~d  175 (268)
T 2fv2_A          172 ILLD  175 (268)
T ss_dssp             HHHS
T ss_pred             Hhcc
Confidence            7553

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=95.28  E-value=0.28  Score=44.07  Aligned_cols=169  Identities=15%  Similarity=0.063  Sum_probs=109.9

Q ss_pred             chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhh--cccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc--
Q 014817          117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFF--TNINVKTASSPELAHESLALLVMFPLTETECMEIAS--  192 (418)
Q Consensus       117 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~--  192 (418)
                      +...+.+|+..|......++.  ..+.   .++.+++.+.  -.+     +|..+...++.+|..+...-.+.--.+.  
T Consensus        59 d~k~~~~ale~L~~~l~~~~~--~~~~---~lDll~kw~~lr~~d-----~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~  128 (266)
T 2of3_A           59 DFKQHLAALDSLVRLADTSPR--SLLS---NSDLLLKWCTLRFFE-----TNPAALIKVLELCKVIVELIRDTETPMSQE  128 (266)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHH--HHHH---THHHHHHHHHHHTTS-----CCHHHHHHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred             CHHHHHHHHHHHHHHhhhChH--HHHH---HHHHHHHHHHHHHhC-----CCHHHHHHHHHHHHHHHHHHHhccccchHH
Confidence            344567888888887654432  2222   2333333221  111     1678888888877655321101000111  


Q ss_pred             -cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc
Q 014817          193 -DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL  271 (418)
Q Consensus       193 -~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~  271 (418)
                       ..-.+|.|+.-+.+....+|..+-.+|..+   ..       +..-..+.+.++.-+++.  +..++..++..|..+-.
T Consensus       129 ea~~~lP~LveKlGd~k~~vR~~~r~il~~l---~~-------v~~~~~v~~~l~~g~ksK--N~R~R~e~l~~l~~li~  196 (266)
T 2of3_A          129 EVSAFVPYLLLKTGEAKDNMRTSVRDIVNVL---SD-------VVGPLKMTPMLLDALKSK--NARQRSECLLVIEYYIT  196 (266)
T ss_dssp             HHHHHHHHHHHGGGCSSHHHHHHHHHHHHHH---HH-------HHCHHHHHHHHHHGGGCS--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCChHHHHHHHHHHHHHH---HH-------HCCHHHHHHHHHHHHccC--CHHHHHHHHHHHHHHHH
Confidence             134689999999999999999988888877   21       222244777888888888  89999999998888854


Q ss_pred             ccccHHHHHHcCch---HHHHHHhcCCCcccHHHHHHHHHHHh
Q 014817          272 VKQTRYKAVAAGAA---ETLVDRLADFDKCDAERALATVELLC  311 (418)
Q Consensus       272 ~~~n~~~i~~~G~v---~~Lv~lL~~~~~~~~~~a~~~L~~L~  311 (418)
                      .....    -..++   +.+..++.+.|..++..|+.++..+-
T Consensus       197 ~~G~~----~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          197 NAGIS----PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACF  235 (266)
T ss_dssp             HHCSG----GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHH
T ss_pred             hcCCC----ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence            33221    24478   99999999999999999998887544

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.25  E-value=1.9  Score=46.19  Aligned_cols=215  Identities=10%  Similarity=-0.026  Sum_probs=122.6

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHh---c--CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhh
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLL---F--HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE  240 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L---~--~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g  240 (418)
                      +...++.|+.+|+.++.......     ...++.++.++   .  ..++.++..++++|..++  .....+...+   ..
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~--~~l~~~~~~l---~~  546 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYC--NWLMENPAYI---PP  546 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTH--HHHC----CH---HH
T ss_pred             cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHH--HHHhcCHHHH---HH
Confidence            45678889999998876542211     13444444443   3  247899999999999993  2112222222   34


Q ss_pred             hHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH--cCchHHHHHHhcCC--CcccHHHHHHHHHHHhcC--H
Q 014817          241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA--AGAAETLVDRLADF--DKCDAERALATVELLCRI--P  314 (418)
Q Consensus       241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~--~G~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~--~  314 (418)
                      +++.|+..|.     +.++..|+.++.+++..-  +..+.-  .+.+..+..++..+  +...+..+..++..++..  +
T Consensus       547 vl~~l~~~l~-----~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~  619 (971)
T 2x1g_F          547 AINLLVRGLN-----SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRP  619 (971)
T ss_dssp             HHHHHHHHHH-----SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHhC-----hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCH
Confidence            7787887773     468999999999999432  333322  34556666677653  345667777777777642  2


Q ss_pred             hHHHHHHhccCChHHHHHHHhc----C--ChHHHHHHHHHHHHHhc-----CCH--HH--------HHHHHhcChHHHHH
Q 014817          315 AGCAEFAEHALTVPLLVKTILK----I--SDRATEYAAGALAALCS-----ASE--RC--------QRDAVSAGVLTQLL  373 (418)
Q Consensus       315 ~~~~~i~~~~g~i~~Lv~~l~~----~--~~~~~~~A~~~L~~l~~-----~~~--~~--------~~~~~~~g~i~~L~  373 (418)
                      +.+.....  ..++++++.+..    .  ++..+......|..|+.     ++.  ..        .-.-....+++.+.
T Consensus       620 ~~~~~~~~--~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~  697 (971)
T 2x1g_F          620 EEIPKYLD--IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVMQRTMPIFK  697 (971)
T ss_dssp             THHHHHHH--HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHHHTTHHHHH
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHHHHHHHHHH
Confidence            34444333  344555554432    1  33334444445444443     111  00        00111245677777


Q ss_pred             HHHhhC-CCHHHHHHHHHHHHHHHhhC
Q 014817          374 LLVQSD-CTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       374 ~ll~~~-~~~~~~~~A~~~L~~l~~~~  399 (418)
                      .++... .++.+.+.+.++++.+....
T Consensus       698 ~~l~~~~~~~~v~e~~~~~~~~~~~~~  724 (971)
T 2x1g_F          698 RIAEMWVEEIDVLEAACSAMKHAITNL  724 (971)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHHhh
Confidence            777543 36789999999999977654

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=95.22  E-value=0.016  Score=53.95  Aligned_cols=63  Identities=16%  Similarity=0.256  Sum_probs=52.4

Q ss_pred             cccCcCccccccCCeec-CCCCc--ccHHHHHHHHH-cCCCCCCCCCCCCCCCCCcccHHHHHHHHH
Q 014817           17 HFRCPISLELMCDPVTV-CTGQT--YDRPSIESWVA-TGNTTCPVTRSPLTDFTLIPNHTLRRLIQD   79 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~-~~g~~--~~r~~i~~~~~-~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~   79 (418)
                      .+.||++...|+.|+-- .|.|.  |+...+-.+.. .+.-.||+|.+.+...++..+.-+.+++..
T Consensus       215 SL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          215 SLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND  281 (360)
T ss_dssp             ESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred             eeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence            46999999999999977 69998  99888887765 445679999999998999888877776543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=94.01  E-value=1.1  Score=41.33  Aligned_cols=115  Identities=12%  Similarity=0.135  Sum_probs=90.5

Q ss_pred             HHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc
Q 014817          172 ESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN  251 (418)
Q Consensus       172 ~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~  251 (418)
                      .+...|..|- ++++.-..+++.+++..+..+++-.+.++.......|...   +.....+..= . ...+|.+++.++.
T Consensus       262 R~FDLL~LLm-HdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQV---SDaksL~~t~-L-~e~LPFi~~~i~~  335 (619)
T 3c2g_A          262 RTFDLLGLLL-HDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQV---SDAKALAKTP-L-ENILPFLLRLIEI  335 (619)
T ss_dssp             HHHHHHHHHC-CSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHH---TTCGGGGTSC-C-TTHHHHHHHHHHH
T ss_pred             HHHHHHHHHh-cccccccceeecccceeEEEEeecCCcHHHHhhhheeeee---cchHHHhhcc-c-cccchHHHHHhcc
Confidence            3444455444 4547788999999999999999999999999999999999   6555433322 2 4589999999886


Q ss_pred             CCCChhhhHHHHHHHHHHcccccc-HHHHHHcCchHHHHHHhc
Q 014817          252 LSSYPRGLKVGIKALFALCLVKQT-RYKAVAAGAAETLVDRLA  293 (418)
Q Consensus       252 ~~~~~~~~~~a~~aL~~L~~~~~n-~~~i~~~G~v~~Lv~lL~  293 (418)
                      .. +.++.....+.|+|...+... +...+..|+++.|-..+.
T Consensus       336 h~-eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~  377 (619)
T 3c2g_A          336 HP-DDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIIS  377 (619)
T ss_dssp             CC-CHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHH
T ss_pred             CC-CcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHh
Confidence            54 788999999999999988764 555578999999988875

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=93.69  E-value=0.059  Score=47.71  Aligned_cols=47  Identities=15%  Similarity=0.307  Sum_probs=37.8

Q ss_pred             ccCcCccccccCCeecC-CCCcccHHHHHHHHHc-CCCCCCCCCCCCCC
Q 014817           18 FRCPISLELMCDPVTVC-TGQTYDRPSIESWVAT-GNTTCPVTRSPLTD   64 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~cp~~~~~l~~   64 (418)
                      ..|.+|.++..-=+.-+ ||+.|-+.|+.+|++. +...||.|+.+.+.
T Consensus       181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            46999999988544443 9999999999999974 45689999987653

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=93.66  E-value=4.2  Score=43.37  Aligned_cols=216  Identities=12%  Similarity=0.045  Sum_probs=124.7

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHh---cCCCHHHHHHHHHHHHHHHhcccc-hhhhhHhhchhhh
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLL---FHSSIEVRVNSAALIEIVLAGMRS-QELRAQISNLDEI  241 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L---~~~~~~~~~~a~~~L~~L~~~s~~-~~~~~~i~~~~g~  241 (418)
                      +...++.++.+|+.++..-.+     .....++.++..|   ..+++.++..++++|..+   +.. ......+   ..+
T Consensus       462 ~w~~~eaal~al~~i~~~~~~-----~~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~---~~~l~~~~~~l---~~v  530 (963)
T 2x19_B          462 SWQHTEALLYGFQSIAETIDV-----NYSDVVPGLIGLIPRISISNVQLADTVMFTIGAL---SEWLADHPVMI---NSV  530 (963)
T ss_dssp             CHHHHHHHHHHHHHHTTSCCS-----SCCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHT---HHHHHHCHHHH---TTT
T ss_pred             chHHHHHHHHHHHHHHhhcCc-----hhhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHH---HHHHHhCHHHH---HHH
Confidence            567788888888887654311     1123455565554   335788999999999998   432 2222333   347


Q ss_pred             HHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH--cCchHHHHHHhcCC--CcccHHHHHHHHHHHhcC--Hh
Q 014817          242 FEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA--AGAAETLVDRLADF--DKCDAERALATVELLCRI--PA  315 (418)
Q Consensus       242 i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~--~G~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~--~~  315 (418)
                      ++.|+..|.    ++.++..|+.+|.+++....  ..+.-  ...+..|..++..+  +...+..+..++..++..  .+
T Consensus       531 l~~l~~~l~----~~~V~~~A~~al~~l~~~~~--~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~  604 (963)
T 2x19_B          531 LPLVLHALG----NPELSVSSVSTLKKICRECK--YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE  604 (963)
T ss_dssp             HHHHHHHTT----CGGGHHHHHHHHHHHHHHTG--GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHhC----CchHHHHHHHHHHHHHHHHH--HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence            888888874    46899999999999985321  11211  22344445555543  345667777888777642  34


Q ss_pred             HHHHHHhccCChHHHHHHHhc-----CChHHHH---HHHHHHHHHhc--CC--H-H----------------HHHHHHhc
Q 014817          316 GCAEFAEHALTVPLLVKTILK-----ISDRATE---YAAGALAALCS--AS--E-R----------------CQRDAVSA  366 (418)
Q Consensus       316 ~~~~i~~~~g~i~~Lv~~l~~-----~~~~~~~---~A~~~L~~l~~--~~--~-~----------------~~~~~~~~  366 (418)
                      .+.....  ..++.+...+..     .++..+.   ....+|..+..  +.  + .                ........
T Consensus       605 ~~~~~~~--~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  682 (963)
T 2x19_B          605 EILKNLH--SLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHHEDDHEGPELRKLPVPQGPNPVVVVLQ  682 (963)
T ss_dssp             HHHHHHH--HHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHHHHHCCSSCCC---------------CCCHHHHHHH
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCCCCCchHHHHH
Confidence            4555444  456666665542     2344443   33333434333  11  0 0                00111223


Q ss_pred             ChHHHHHHHHhhC-CCHHHHHHHHHHHHHHHhhCC
Q 014817          367 GVLTQLLLLVQSD-CTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       367 g~i~~L~~ll~~~-~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      .+.+.+..++... .+..+.+.+..+++.+.....
T Consensus       683 ~~~~~~~~~l~~~~~~~~v~e~~~~~l~~~~~~~~  717 (963)
T 2x19_B          683 QVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLL  717 (963)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhhc
Confidence            4566666666532 267889999999998876543

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=93.13  E-value=2.5  Score=38.94  Aligned_cols=143  Identities=16%  Similarity=0.118  Sum_probs=111.5

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh--chhhhHH
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS--NLDEIFE  243 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~--~~~g~i~  243 (418)
                      ++++.-.+...|+.+...+ ...+.+...+.+..+.+.++.++-++...|..++..|.  ..+........  ...-+..
T Consensus       136 ~~diAl~~G~mLRecir~e-~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelL--t~Hk~lvaefL~~nyd~Ff~  212 (341)
T 1upk_A          136 SPEIALNCGIMLRECIRHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLL--TRHKLLSAEFLEQHYDRFFS  212 (341)
T ss_dssp             STTTHHHHHHHHHHHHTSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHH--HSSHHHHHHHHHHTHHHHHH
T ss_pred             cchhHhHHHHHHHHHHHhH-HHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHH--hccHHHHHHHHHHhHHHHHH
Confidence            5777788888899888777 66666777778889999999999999999999999996  55554333332  2234667


Q ss_pred             HHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHH----cCchHHHHHHhcCCCcccHHHHHHHHHHHhcC
Q 014817          244 GVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA----AGAAETLVDRLADFDKCDAERALATVELLCRI  313 (418)
Q Consensus       244 ~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~----~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  313 (418)
                      ..-.+|.++  +--++..++..|..|-....|..-|..    ..-+..++.+|++.+..++-.|-.+....+.+
T Consensus       213 ~y~~Ll~S~--NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVAN  284 (341)
T 1upk_A          213 EYEKLLHSE--NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVAN  284 (341)
T ss_dssp             HHHHHTTCS--SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhcCC--cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeC
Confidence            777888988  899999999999999988877666643    45677888888888888988888887765543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=92.96  E-value=0.85  Score=48.94  Aligned_cols=192  Identities=11%  Similarity=0.065  Sum_probs=108.5

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHH-----Hhc----------------
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSS-----LLF----------------  205 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-----~L~----------------  205 (418)
                      .++..++++.....  ......+...++..+..++... ..+..+.....++.++.     .|.                
T Consensus       288 ~~~~~~~~l~~~~~--~~~~~~~~~~al~fl~~~~~~~-~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w~~dp~e~  364 (960)
T 1wa5_C          288 FIQITWNLLTSISN--QPKYDILVSKSLSFLTAVTRIP-KYFEIFNNESAMNNITEQIILPNVTLREEDVELFEDDPIEY  364 (960)
T ss_dssp             HHHHHHHHHHHCCS--CTTSHHHHHHHHHHHHHHHTSH-HHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTTTTCHHHH
T ss_pred             HHHHHHHHHHhcCC--CcCcHHHHHHHHHHHHHHhCcH-hHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHHhcCHHHH
Confidence            45555565542110  0014567788888777765443 33444432344555552     221                


Q ss_pred             -------CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh------cCCCChhhhHHHHHHHHHHccc
Q 014817          206 -------HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK------NLSSYPRGLKVGIKALFALCLV  272 (418)
Q Consensus       206 -------~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~------~~~~~~~~~~~a~~aL~~L~~~  272 (418)
                             +.....|..|..+|..|+   ..-.  ..+.  .-+++.+-.++.      +.  +...++.|+.++..++..
T Consensus       365 i~~d~e~~d~~s~R~aa~~~L~~l~---~~~~--~~v~--~~~l~~i~~~l~~~~~~~~~--~w~~reaal~algaia~~  435 (960)
T 1wa5_C          365 IRRDLEGSDTDTRRRACTDFLKELK---EKNE--VLVT--NIFLAHMKGFVDQYMSDPSK--NWKFKDLYIYLFTALAIN  435 (960)
T ss_dssp             HHHHHHC----CHHHHHHHHHHHHH---HHCH--HHHH--HHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHBS
T ss_pred             HHhccCcccccCcHHHHHHHHHHHH---HHcc--hhHH--HHHHHHHHHHHHHhccCcch--hHHHHHHHHHHHHHHHHH
Confidence                   011245667777888883   2221  2221  224555555565      23  667899999999999754


Q ss_pred             cccHHHHHHc-----CchH----HHHHHhcCC---CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChH
Q 014817          273 KQTRYKAVAA-----GAAE----TLVDRLADF---DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDR  340 (418)
Q Consensus       273 ~~n~~~i~~~-----G~v~----~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~  340 (418)
                      ...+..-.+.     ...+    .++..|.+.   ++.++..++++|...+..- .. ....  ..++.+++.|.+.+..
T Consensus       436 ~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~-~~l~--~~l~~l~~~L~d~~~~  511 (960)
T 1wa5_C          436 GNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TK-AQLI--ELMPILATFLQTDEYV  511 (960)
T ss_dssp             SCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CH-HHHH--HHHHHHHHHTTCSCHH
T ss_pred             hccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CH-HHHH--HHHHHHHHHhCCCChh
Confidence            2111100000     1222    233344555   6778899999999988641 11 2222  4577888888878899


Q ss_pred             HHHHHHHHHHHHhc
Q 014817          341 ATEYAAGALAALCS  354 (418)
Q Consensus       341 ~~~~A~~~L~~l~~  354 (418)
                      ++..|+.+|.+++.
T Consensus       512 V~~~A~~Al~~~~~  525 (960)
T 1wa5_C          512 VYTYAAITIEKILT  525 (960)
T ss_dssp             HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999886

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=92.73  E-value=3.4  Score=36.91  Aligned_cols=176  Identities=11%  Similarity=0.051  Sum_probs=111.0

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhh----cCCCChhhhHHHHHHHHHHcccc-
Q 014817          199 SLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILK----NLSSYPRGLKVGIKALFALCLVK-  273 (418)
Q Consensus       199 ~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~~~a~~aL~~L~~~~-  273 (418)
                      .+...|-+.+..-+..++..|....  ..+   ...+..   .+..+++.+.    +.  ++.+...++.+|..+...- 
T Consensus        50 ~~~~~lfs~d~k~~~~ale~L~~~l--~~~---~~~~~~---~lDll~kw~~lr~~d~--N~~v~~~~L~~L~~l~~~l~  119 (266)
T 2of3_A           50 SLMSQLFHKDFKQHLAALDSLVRLA--DTS---PRSLLS---NSDLLLKWCTLRFFET--NPAALIKVLELCKVIVELIR  119 (266)
T ss_dssp             HHHHHHTCSCHHHHHHHHHHHHHHH--HHC---HHHHHH---THHHHHHHHHHHTTSC--CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHh--hhC---hHHHHH---HHHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHHH
Confidence            3444555556666667777776663  222   222211   2334444332    44  7888888888888874321 


Q ss_pred             --ccHHHHHH-cCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 014817          274 --QTRYKAVA-AGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALA  350 (418)
Q Consensus       274 --~n~~~i~~-~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~  350 (418)
                        +.+..-.+ .-.+|.|++-+.+....+++.+-.+|..+..-       ..-....+.+++-+.+.|.+.++.++..+.
T Consensus       120 ~~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~  192 (266)
T 2of3_A          120 DTETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSKNARQRSECLLVIE  192 (266)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             hccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence              11111111 23689999988877777888888777766531       111123445666678889999999998888


Q ss_pred             HHhc--CCHHHHHHHHhcChH---HHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          351 ALCS--ASERCQRDAVSAGVL---TQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       351 ~l~~--~~~~~~~~~~~~g~i---~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      .+-.  |-.       ...++   +.+..++... +..+|..|..++-.+..+-
T Consensus       193 ~li~~~G~~-------~~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~y~~~  238 (266)
T 2of3_A          193 YYITNAGIS-------PLKSLSVEKTVAPFVGDK-DVNVRNAAINVLVACFKFE  238 (266)
T ss_dssp             HHHHHHCSG-------GGGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCCC-------ccccccchHHHHHHHcCC-CHHHHHHHHHHHHHHHHHh
Confidence            8765  333       23467   8888888666 9999999999988777654

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=92.45  E-value=0.85  Score=44.11  Aligned_cols=122  Identities=16%  Similarity=0.103  Sum_probs=84.8

Q ss_pred             cCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCc
Q 014817          205 FHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGA  284 (418)
Q Consensus       205 ~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~  284 (418)
                      ..|+...+..|+..|....  ...++    +.  ..+|.+++++.++.  +..++..|.+.|..+|.. ++..++     
T Consensus        38 ~kg~~k~K~LaaQ~I~kff--k~FP~----l~--~~Ai~a~lDLcEDe--d~~IR~qaik~Lp~~ck~-~~i~ki-----  101 (507)
T 3u0r_A           38 VKGGTKEKRLAAQFIPKFF--KHFPE----LA--DSAINAQLDLCEDE--DVSIRRQAIKELPQFATG-ENLPRV-----  101 (507)
T ss_dssp             GGSCHHHHHHHHHHHHHHG--GGCGG----GH--HHHHHHHHHHHTCS--SHHHHHHHHHHGGGGCCT-TCHHHH-----
T ss_pred             cCCCHHHHHHHHHHHHHHH--hhChh----hH--HHHHHHHHHHHhcc--cHHHHHHHHHhhHHHhhh-hhhhhH-----
Confidence            4678999999999999883  33333    22  35899999999998  899999999999999988 766654     


Q ss_pred             hHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHH
Q 014817          285 AETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAA  351 (418)
Q Consensus       285 v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~  351 (418)
                      +..|+++|...+..-....-.+|..|.. ++.         +.+..+...+.++++.+++.++.-|..
T Consensus       102 aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk---------~tl~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          102 ADILTQLLQTDDSAEFNLVNNALLSIFKMDAK---------GTLGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHHhcChH---------HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            5678999987665433444444443332 211         333444444555677888888877755

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=92.12  E-value=1.2  Score=48.19  Aligned_cols=141  Identities=9%  Similarity=-0.027  Sum_probs=83.1

Q ss_pred             CCHHHHHHHHHHHHHHHhcccchh-hhhHhhchhhhHHHHHHHhhcCCC---ChhhhHHHHHHHHHHccccccHHHHHHc
Q 014817          207 SSIEVRVNSAALIEIVLAGMRSQE-LRAQISNLDEIFEGVIDILKNLSS---YPRGLKVGIKALFALCLVKQTRYKAVAA  282 (418)
Q Consensus       207 ~~~~~~~~a~~~L~~L~~~s~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~---~~~~~~~a~~aL~~L~~~~~n~~~i~~~  282 (418)
                      .+...++.++++++.++. ...++ ....+   ..+++.|+.++.....   ...++..++++|...+..-........ 
T Consensus       465 ~~W~~~EA~~~a~gaIa~-~~~~~~e~~~l---~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-  539 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISG-TMSEDTEKRFV---VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-  539 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTT-SSCHHHHHHHH---HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-
T ss_pred             CCHHHHHHHHHHHHHHHc-CCCchhHHHHH---HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-
Confidence            478999999999999942 22222 23333   3589999999875310   223444666777766543322222211 


Q ss_pred             CchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHh-cc----CChHHH----HHHHhcCChHHHHHHHHHHHHHh
Q 014817          283 GAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAE-HA----LTVPLL----VKTILKISDRATEYAAGALAALC  353 (418)
Q Consensus       283 G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~----g~i~~L----v~~l~~~~~~~~~~A~~~L~~l~  353 (418)
                      .++..|++.|...++++++.|++++.+||.  +.+..+.. +.    ..++.+    .+....-+......+..++..+.
T Consensus       540 ~vl~~L~~~l~~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi  617 (1023)
T 4hat_C          540 TVILKLFEFMHETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIII  617 (1023)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            244445555555567899999999999995  33344431 00    123333    33333346666678888888877


Q ss_pred             c
Q 014817          354 S  354 (418)
Q Consensus       354 ~  354 (418)
                      .
T Consensus       618 ~  618 (1023)
T 4hat_C          618 S  618 (1023)
T ss_dssp             T
T ss_pred             H
Confidence            7

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=92.11  E-value=7.2  Score=35.91  Aligned_cols=203  Identities=14%  Similarity=0.014  Sum_probs=142.2

Q ss_pred             hhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhh----hhHhhchhhhHHHHHHHhhcCCCChhhhHHHHH
Q 014817          189 EIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQEL----RAQISNLDEIFEGVIDILKNLSSYPRGLKVGIK  264 (418)
Q Consensus       189 ~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~----~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~  264 (418)
                      ..+...+.+..|+..|..=+-+.|..++.+..++.  ......    -..+.....+   |.-++.... +++..-.+-.
T Consensus        72 ~ei~~~dll~~Li~~l~~L~fE~RKd~~~if~~ll--r~~~~~~~p~v~Yl~~~pei---l~~L~~gYe-~~diAl~~G~  145 (341)
T 1upk_A           72 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNIL--RRQIGTRTPTVEYICTQQNI---LFMLLKGYE-SPEIALNCGI  145 (341)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHH--TCCBTTBCHHHHHHHTCTHH---HHHHHHGGG-STTTHHHHHH
T ss_pred             HHHHHhCHHHHHHHhcccCCchhhccHHHHHHHHH--hcccCCCCchhHHHHcCHHH---HHHHHHhhc-cchhHhHHHH
Confidence            34455688999999999999999999999999995  222111    1122222223   233333322 5677777778


Q ss_pred             HHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHHHhc--cCChHHHHHHHhcCChHH
Q 014817          265 ALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEFAEH--ALTVPLLVKTILKISDRA  341 (418)
Q Consensus       265 aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~--~g~i~~Lv~~l~~~~~~~  341 (418)
                      .|+....++.....+.+.+.+-.+.+.+..++=++...|..++..|- .+......+...  .......-++|.++|-..
T Consensus       146 mLRecir~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVT  225 (341)
T 1upk_A          146 MLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVT  225 (341)
T ss_dssp             HHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchh
Confidence            88888888888888889889999999999888888888888887555 555544444432  124556677778899999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHH---H-hcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          342 TEYAAGALAALCSASERCQRDA---V-SAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       342 ~~~A~~~L~~l~~~~~~~~~~~---~-~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ++++++.|..|-- ++.+-..|   + +..-+..++.+|.+. +..+|-.|--+.+.+..+.
T Consensus       226 kRQSlKLLgelLl-dr~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVANP  285 (341)
T 1upk_A          226 KRQSLKLLGELLL-DRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANP  285 (341)
T ss_dssp             HHHHHHHHHHHHH-SGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHh-CchHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeeeCC
Confidence            9999999999877 33322222   2 234567777888777 9999999988888887764

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=92.03  E-value=3.7  Score=35.84  Aligned_cols=180  Identities=15%  Similarity=0.077  Sum_probs=99.4

Q ss_pred             HHHHhhcCCCchhhhHHHHHHHHHhhhcChhhh-hHHhhcChHHHHHHHhhccccccc----CCChhHHHHHHHHHhcCC
Q 014817          107 LLNQASSESNTYGSRLSALRRLRGLARDSDKNR-SLISSHNVRAILSQVFFTNINVKT----ASSPELAHESLALLVMFP  181 (418)
Q Consensus       107 lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~----~~~~~v~~~a~~~L~~l~  181 (418)
                      .++.|++...+ +...+-+..|+...+.++... +.| ..||+..|+.+|..-...+.    ..+...+..++.+|..+.
T Consensus         5 yi~~L~~~~~~-~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm   82 (233)
T 2f31_A            5 YIQELRSGLRD-MHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   82 (233)
T ss_dssp             HHHHHTTTCCH-HHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhccch-HHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence            45666654321 111234555554444433322 234 57899999999964311000    013456777888888776


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh--h-hhHhhc---------hhhhHHHHHHHh
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE--L-RAQISN---------LDEIFEGVIDIL  249 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~--~-~~~i~~---------~~g~i~~Lv~lL  249 (418)
                      .........+..++.+..|+..|.+.++.++..++.+|..++   ..++  . ...+-.         ...-...+++.+
T Consensus        83 n~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc---~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l  159 (233)
T 2f31_A           83 NNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALC---ILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL  159 (233)
T ss_dssp             SSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHH---TCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred             CChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHH---hCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence            666333444556789999999999999999999999998884   3222  2 222210         011334566666


Q ss_pred             hcCCCChhhhHHHHHHHHHHccccc-------cHHHHHHcCchHHHHHHhc
Q 014817          250 KNLSSYPRGLKVGIKALFALCLVKQ-------TRYKAVAAGAAETLVDRLA  293 (418)
Q Consensus       250 ~~~~~~~~~~~~a~~aL~~L~~~~~-------n~~~i~~~G~v~~Lv~lL~  293 (418)
                      ++.. +.+.+.++...+-.|..+.+       -|..+...|..+. ++-|.
T Consensus       160 ~~~~-~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~i-l~~l~  208 (233)
T 2f31_A          160 KSGT-SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELR  208 (233)
T ss_dssp             STTS-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHH-HHHHH
T ss_pred             hcCC-hHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH-HHHHh
Confidence            6442 44555555555545544432       2344445555444 44444

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=91.81  E-value=6.8  Score=37.02  Aligned_cols=184  Identities=16%  Similarity=0.077  Sum_probs=108.0

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhh-hHHhhcChHHHHHHHhhcccccc----cCCChhHHHHHHHHHhc
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNR-SLISSHNVRAILSQVFFTNINVK----TASSPELAHESLALLVM  179 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~----~~~~~~v~~~a~~~L~~  179 (418)
                      ...++.|+++..+ .....-+..|+.....++... ..|+ .+|+..|+.+|..-....    ...+...+..++.+|..
T Consensus        69 ~~yi~~L~~~~~~-~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka  146 (383)
T 3eg5_B           69 MMYIQELRSGLRD-MHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA  146 (383)
T ss_dssp             HHHHHHHTTTCCH-HHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcccc-hhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence            4567777765322 112345666765555444433 3455 788999999995321000    00135677888888887


Q ss_pred             CCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccch--hh-hhHhhc---------hhhhHHHHHH
Q 014817          180 FPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQ--EL-RAQISN---------LDEIFEGVID  247 (418)
Q Consensus       180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~--~~-~~~i~~---------~~g~i~~Lv~  247 (418)
                      +..........+.....+..|+..|.+.++.++..++.+|..++   ...  ++ ...+-.         ...-...++.
T Consensus       147 lmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc---~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~  223 (383)
T 3eg5_B          147 FMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALC---ILPQPEDMNERVLEAMTERAEMDEVERFQPLLD  223 (383)
T ss_dssp             HTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHH---TCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred             HhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHH---hCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence            77666333445556789999999999999999999999998884   332  22 222210         0123556777


Q ss_pred             HhhcCCCChhhhHHHHHHHHHHccccc-------cHHHHHHcCchHHHHHHhcCC
Q 014817          248 ILKNLSSYPRGLKVGIKALFALCLVKQ-------TRYKAVAAGAAETLVDRLADF  295 (418)
Q Consensus       248 lL~~~~~~~~~~~~a~~aL~~L~~~~~-------n~~~i~~~G~v~~Lv~lL~~~  295 (418)
                      .|++.. +.+.+.++...+-.+....+       -|..+...|..+.+ .-|...
T Consensus       224 ~L~~~~-~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~il-~~lr~~  276 (383)
T 3eg5_B          224 GLKSGT-SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQVL-QELREI  276 (383)
T ss_dssp             TTSTTS-CHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHHH-HHHTTS
T ss_pred             HHHccC-cHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHHH-HHHhcC
Confidence            777642 55555555555555554432       23444456655554 446543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=91.43  E-value=3.8  Score=43.80  Aligned_cols=218  Identities=10%  Similarity=-0.007  Sum_probs=118.6

Q ss_pred             chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCc
Q 014817          117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADK  196 (418)
Q Consensus       117 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~  196 (418)
                      +...+..|+..+..++..-....     ...++.++.++..-...  ..++.++..++++|+.++.--....+.+  ...
T Consensus       477 ~w~~~eaal~~l~~iae~~~~~~-----~~~l~~l~~~l~~l~~~--d~~~~vr~~a~~~l~~~~~~l~~~~~~l--~~v  547 (971)
T 2x1g_F          477 HWTKLEACIYSFQSVAEHFGGEE-----KRQIPRLMRVLAEIPYE--KLNVKLLGTALETMGSYCNWLMENPAYI--PPA  547 (971)
T ss_dssp             CCHHHHHHHHHHHHTTTC-----------CHHHHHHHHHHHSCTT--TSCHHHHHHHHHHHHHTHHHHC----CH--HHH
T ss_pred             cHHHHHHHHHHHHHHHhhcChhh-----hHHHHHHHHHHHhcCcc--ccCHHHHHHHHHHHHHHHHHHhcCHHHH--HHH
Confidence            44456778888888775432211     13445555544211000  0157899999999998763211111111  234


Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc-hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc--
Q 014817          197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN-LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK--  273 (418)
Q Consensus       197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~--  273 (418)
                      ++.|+..|.   +.++..|+.+|.+++   .  +.+..+.. ....+..|..++..+..+...+..+..++..++..-  
T Consensus       548 l~~l~~~l~---~~v~~~A~~al~~l~---~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~  619 (971)
T 2x1g_F          548 INLLVRGLN---SSMSAQATLGLKELC---R--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRP  619 (971)
T ss_dssp             HHHHHHHHH---SSCHHHHHHHHHHHH---H--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHhC---hHHHHHHHHHHHHHH---H--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCH
Confidence            666666662   678899999999994   2  22233321 135777888888875325678888899998887542  


Q ss_pred             ccHHHHHHcCchHHHHHHhc----CC--CcccHHHHHHHHHHHh---cCH-----h---------HHHHHHhccCChHHH
Q 014817          274 QTRYKAVAAGAAETLVDRLA----DF--DKCDAERALATVELLC---RIP-----A---------GCAEFAEHALTVPLL  330 (418)
Q Consensus       274 ~n~~~i~~~G~v~~Lv~lL~----~~--~~~~~~~a~~~L~~L~---~~~-----~---------~~~~i~~~~g~i~~L  330 (418)
                      +.....++ ..+++++..+.    ..  +..........|..|+   ..-     +         .-..+.  ...++.+
T Consensus       620 ~~~~~~~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~l  696 (971)
T 2x1g_F          620 EEIPKYLD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPIF  696 (971)
T ss_dssp             THHHHHHH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHHH
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHHH
Confidence            33333332 24555555443    21  2222233333443333   110     0         011122  2466777


Q ss_pred             HHHHhc--CChHHHHHHHHHHHHHhc
Q 014817          331 VKTILK--ISDRATEYAAGALAALCS  354 (418)
Q Consensus       331 v~~l~~--~~~~~~~~A~~~L~~l~~  354 (418)
                      ..++..  .+..+.+.+++++..++.
T Consensus       697 ~~~l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          697 KRIAEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhccccHHHHHHHHHHHHHHHH
Confidence            766654  366889999999888765

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=91.18  E-value=0.58  Score=46.24  Aligned_cols=167  Identities=13%  Similarity=0.083  Sum_probs=109.6

Q ss_pred             ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcc-cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHh
Q 014817          146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIAS-DADKITSLSSLLFHSSIEVRVNSAALIEIVLA  224 (418)
Q Consensus       146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~  224 (418)
                      .++..|+..+...       ..+++..++-.|..+   .    ..+. -.++++.++.-|++.+.+++..|+.+|.-+  
T Consensus       263 ~IL~qLV~~l~~~-------~WEVRHGGLLGLKYL---~----DLL~~Ld~Vv~aVL~GL~D~DDDVRAVAAetLiPI--  326 (800)
T 3oc3_A          263 DIIEQLVGFLDSG-------DWQVQFSGLIALGYL---K----EFVEDKDGLCRKLVSLLSSPDEDIKLLSAELLCHF--  326 (800)
T ss_dssp             CHHHHHTTGGGCS-------CHHHHHHHHHHHHHT---G----GGCCCHHHHHHHHHHHTTCSSHHHHHHHHHHHTTS--
T ss_pred             HHHHHHHhhcCCC-------CeeehhhhHHHHHHH---H----HHHHHHHHHHHHHHhhcCCcccHHHHHHHHHhhhh--
Confidence            3455555444333       588999999888887   1    1221 256788888888999999999999999999  


Q ss_pred             cccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817          225 GMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERAL  304 (418)
Q Consensus       225 ~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~  304 (418)
                       + .   ...+   ..++..|.+.|.+-++-..........|..|+..+.+  .......||.|...+.+.-.+++..++
T Consensus       327 -A-~---p~~l---~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~--a~~dp~LVPRL~PFLRHtITSVR~AVL  396 (800)
T 3oc3_A          327 -P-I---TDSL---DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE--LSIPPERLKDIFPCFTSPVPEVRTSIL  396 (800)
T ss_dssp             -C-C---SSTH---HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT--CCCCSGGGGGTGGGGTCSSHHHHHHHH
T ss_pred             -c-c---hhhH---HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc--cccChHHHHHHHhhhcCCcHHHHHHHH
Confidence             6 1   1122   4577777777776531223444556677777665532  111237889999999998889999999


Q ss_pred             HHHHHHhcCHhHHHHHHhccCChHHHHHH-HhcCChHHHHHHHHHH
Q 014817          305 ATVELLCRIPAGCAEFAEHALTVPLLVKT-ILKISDRATEYAAGAL  349 (418)
Q Consensus       305 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~-l~~~~~~~~~~A~~~L  349 (418)
                      .+|..+. ..          .+++.+.+. |...+..+++.+..+-
T Consensus       397 ~TL~tfL-~~----------~~LRLIFQNILLE~neeIl~lS~~VW  431 (800)
T 3oc3_A          397 NMVKNLS-EE----------SIDFLVAEVVLIEEKDEIREMAIKLL  431 (800)
T ss_dssp             HHTTTCC-CH----------HHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             HHHHHHH-hh----------hHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence            9998777 11          222333333 3447777777777763

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=90.88  E-value=0.84  Score=40.09  Aligned_cols=118  Identities=19%  Similarity=0.153  Sum_probs=80.1

Q ss_pred             HcCchHHHHHHhcC----C-------CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHH
Q 014817          281 AAGAAETLVDRLAD----F-------DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGAL  349 (418)
Q Consensus       281 ~~G~v~~Lv~lL~~----~-------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L  349 (418)
                      ..||+..|+.+|..    +       +...+..++.+|..|..+..|...+..+..++..++..|.+.+..++..|+.+|
T Consensus        41 ~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL  120 (233)
T 2f31_A           41 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  120 (233)
T ss_dssp             HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHH
Confidence            45777777777752    1       224456789999999999999999999988999999988889999999999999


Q ss_pred             HHHhcCC---H--H-HHH------HHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          350 AALCSAS---E--R-CQR------DAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       350 ~~l~~~~---~--~-~~~------~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      ..+|..+   .  + ...      ...+..-+..++..+..+.+...+-.+..++..+...
T Consensus       121 ~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~  181 (233)
T 2f31_A          121 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP  181 (233)
T ss_dssp             HHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCC
Confidence            9999822   1  1 111      1112223445555554443555555555555555544

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=90.55  E-value=1.7  Score=41.21  Aligned_cols=121  Identities=18%  Similarity=0.141  Sum_probs=84.0

Q ss_pred             HHHHHcCchHHHHHHhcC-----------CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHH
Q 014817          277 YKAVAAGAAETLVDRLAD-----------FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYA  345 (418)
Q Consensus       277 ~~i~~~G~v~~Lv~lL~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A  345 (418)
                      ..++ .+|+..|+.+|..           .+...+..++.+|..|..+..|...+..+..++..|+..|.+.++.++..|
T Consensus       104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~a  182 (383)
T 3eg5_B          104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDA  182 (383)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHH
T ss_pred             HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhCCCchHHHHHH
Confidence            3444 5667777777641           123556778999999999999999999999999999999988999999999


Q ss_pred             HHHHHHHhcCCH-H-----HHHH------HHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          346 AGALAALCSASE-R-----CQRD------AVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       346 ~~~L~~l~~~~~-~-----~~~~------~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +.+|..+|..+. +     ....      ..+..-+..++..|....+...+-.+..++..+...
T Consensus       183 leLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~  247 (383)
T 3eg5_B          183 AKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP  247 (383)
T ss_dssp             HHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcC
Confidence            999999998332 1     1111      122234566666665544666666666666555543

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=90.55  E-value=0.39  Score=34.55  Aligned_cols=46  Identities=22%  Similarity=0.283  Sum_probs=37.2

Q ss_pred             ccCcCcccccc-----CCeec--CCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           18 FRCPISLELMC-----DPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        18 ~~Cpi~~~~~~-----dPv~~--~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      -.|.||++-.-     +|.+.  .|+...||.|.+-=.++++..||.|+..+.
T Consensus        17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk   69 (93)
T 1weo_A           17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence            47999998532     24444  599999999999988889999999998875

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=90.33  E-value=10  Score=40.60  Aligned_cols=237  Identities=10%  Similarity=0.033  Sum_probs=132.0

Q ss_pred             CCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHH
Q 014817           98 PAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALL  177 (418)
Q Consensus        98 ~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L  177 (418)
                      |.+..++...++...+++.+...|.+|-..|..+-+. +.         +......+|.....    .+.+++--|+.+|
T Consensus         2 ~m~~~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-p~---------aw~~~~~iL~~~~~----~~~~vr~fa~~~L   67 (980)
T 3ibv_A            2 PMSAQDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-ST---------GWKICHEIFSEKTK----YKPSTRLICLQTL   67 (980)
T ss_dssp             -CHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-TT---------HHHHHHHHTTCTTT----SCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-hh---------HHHHHHHHHhCCCC----CCHHHHHHHHHHH
Confidence            3455677777765555543444567787777776443 32         45555667755320    0467888888776


Q ss_pred             hcCC--CChhH----HHhhcccCCchHHHHHHhc--CCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHh
Q 014817          178 VMFP--LTETE----CMEIASDADKITSLSSLLF--HSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDIL  249 (418)
Q Consensus       178 ~~l~--~~~~~----~~~~i~~~g~i~~Lv~~L~--~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL  249 (418)
                      .+..  .+. +    .+..+ +...+..+.. ..  .+..-++...+.+|..++   ..+ .-   ....+.++-|+.++
T Consensus        68 ~~~I~~l~~-e~~~~~~~~l-r~~ll~~l~~-~~~~~~~~~IrnKL~~~la~l~---~~~-~p---~~Wp~~i~~l~~~~  137 (980)
T 3ibv_A           68 SEKVREWNN-ESNLLELQMI-RDSVWSYIKE-LSFLDEPAYISNAVQHLLTLLF---LQL-YP---SNWNDFFASLQGVI  137 (980)
T ss_dssp             HHHHHHCCT-TTSHHHHHHH-HHHHHHHHHH-CCSTTSCTHHHHHHHHHHHHHH---HHH-TT---TTCTTHHHHHHHHH
T ss_pred             HHHHHhCCh-hhhHHHHHHH-HHHHHHHHHH-hcCCCCcHHHHHHHHHHHHHHH---HHh-Cc---ccCchHHHHHHHHh
Confidence            6322  122 2    22222 2222333333 11  245778888888888883   322 11   13356888899988


Q ss_pred             hcCCCCh-hhhHHHHHHHHHHccc----c-----c--c-----HHHHHHcC---chHHHHHHhcC----CCcccHHHHHH
Q 014817          250 KNLSSYP-RGLKVGIKALFALCLV----K-----Q--T-----RYKAVAAG---AAETLVDRLAD----FDKCDAERALA  305 (418)
Q Consensus       250 ~~~~~~~-~~~~~a~~aL~~L~~~----~-----~--n-----~~~i~~~G---~v~~Lv~lL~~----~~~~~~~~a~~  305 (418)
                      ..+  +. ......+++|..|+..    .     +  .     +..+.+..   +++....+|..    .+..+...++.
T Consensus       138 ~~~--~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~  215 (980)
T 3ibv_A          138 AAS--SQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQ  215 (980)
T ss_dssp             HHH--CCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCC--ChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHH
Confidence            875  34 4455566666644321    0     0  1     22222211   14444445532    56677788888


Q ss_pred             HHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc--CCHHHHHHHH
Q 014817          306 TVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS--ASERCQRDAV  364 (418)
Q Consensus       306 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~--~~~~~~~~~~  364 (418)
                      +|..-..+-.. ..++.. ..++.+.+.+.  ++..++.|+.+|..|..  .+++....++
T Consensus       216 ~l~s~i~wi~~-~~i~~~-~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li  272 (980)
T 3ibv_A          216 VYAQWVSWINI-NLIVNE-PCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLL  272 (980)
T ss_dssp             HHHHHTTTSCH-HHHHCH-HHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHhhcCH-Hhhhcc-hHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence            88877764322 333442 56666666554  58899999999999887  3444443333

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=89.81  E-value=1.5  Score=36.10  Aligned_cols=75  Identities=11%  Similarity=0.121  Sum_probs=62.0

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ++..|.+.|.+.++.++..|+.+|-.+.. .......++.+...+..|+.++....++.+|+++..+++.-....+
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~~f~  128 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSEEFQ  128 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhc
Confidence            45577888888999999999999888877 4577888888888999999999754578999999999988877544

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=89.76  E-value=6.8  Score=41.69  Aligned_cols=178  Identities=12%  Similarity=0.070  Sum_probs=103.9

Q ss_pred             cCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc-CCCChhhhHHHHHHHHHHcccc-ccHHHHHHc
Q 014817          205 FHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN-LSSYPRGLKVGIKALFALCLVK-QTRYKAVAA  282 (418)
Q Consensus       205 ~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~  282 (418)
                      .+.+...++.++.+|..++.+... +.       ...++.++..+.. ...++.++..++++|...+..- .+. ... .
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~-~~-------~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~-~~l-~  528 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDV-NY-------SDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHP-VMI-N  528 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCS-SC-------CSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCH-HHH-T
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCc-hh-------hHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCH-HHH-H
Confidence            445778899999999999421111 11       1244455554422 1116789999999999988642 222 233 3


Q ss_pred             CchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhc-cCChHHHHHHHhc--CChHHHHHHHHHHHHHhcCC-HH
Q 014817          283 GAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEH-ALTVPLLVKTILK--ISDRATEYAAGALAALCSAS-ER  358 (418)
Q Consensus       283 G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~l~~~~-~~  358 (418)
                      .+++.|+..|.+  +.++..|+.+|..++.  +.+..+... ...+..+.+++.+  -+...+..+..++..++... ++
T Consensus       529 ~vl~~l~~~l~~--~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~  604 (963)
T 2x19_B          529 SVLPLVLHALGN--PELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE  604 (963)
T ss_dssp             TTHHHHHHHTTC--GGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHhCC--chHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence            688888888854  7899999999999994  222222211 0223333444443  25678888899988887633 23


Q ss_pred             HHHHHHhcChHHHHHHHHh----hCCCHHHHHHHHHHHHHHHh
Q 014817          359 CQRDAVSAGVLTQLLLLVQ----SDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       359 ~~~~~~~~g~i~~L~~ll~----~~~~~~~~~~A~~~L~~l~~  397 (418)
                      ...... ..+++++...+.    .+.++..+.....++..|+.
T Consensus       605 ~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~~  646 (963)
T 2x19_B          605 EILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSN  646 (963)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            333222 234555544443    22256666665556555543

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=89.52  E-value=1.3  Score=47.79  Aligned_cols=98  Identities=10%  Similarity=0.023  Sum_probs=59.0

Q ss_pred             ChhhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCC-----CcccHHHHHHHHHHHhcCHhHHHHHHhccCChH
Q 014817          255 YPRGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADF-----DKCDAERALATVELLCRIPAGCAEFAEHALTVP  328 (418)
Q Consensus       255 ~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~  328 (418)
                      +-..++++++++..++.... ....-.=..+++.|+.++.+.     ...+...++++|...+..-........  ..+.
T Consensus       466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl~  543 (1023)
T 4hat_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVIL  543 (1023)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHHH
Confidence            67899999999999996643 222212234677888877531     112333555666655532211111221  2333


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          329 LLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       329 ~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      .|++.|...++.+++.|++++.+||.
T Consensus       544 ~L~~~l~~~~~~v~~~A~~al~~l~~  569 (1023)
T 4hat_C          544 KLFEFMHETHEGVQDMACDTFIKIVQ  569 (1023)
T ss_dssp             HHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence            44444444678899999999999997

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=88.33  E-value=19  Score=34.83  Aligned_cols=133  Identities=9%  Similarity=0.012  Sum_probs=93.2

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      .+...++...+++   .+.+.-|...+.+..+.-+...+     -++..++++..+.       +..++..|+..|-.++
T Consensus        29 ~~y~~Il~~~kg~---~k~K~LaaQ~I~kffk~FP~l~~-----~Ai~a~lDLcEDe-------d~~IR~qaik~Lp~~c   93 (507)
T 3u0r_A           29 DAYQVILDGVKGG---TKEKRLAAQFIPKFFKHFPELAD-----SAINAQLDLCEDE-------DVSIRRQAIKELPQFA   93 (507)
T ss_dssp             HHHHHHHHGGGSC---HHHHHHHHHHHHHHGGGCGGGHH-----HHHHHHHHHHTCS-------SHHHHHHHHHHGGGGC
T ss_pred             HHHHHHHHhcCCC---HHHHHHHHHHHHHHHhhChhhHH-----HHHHHHHHHHhcc-------cHHHHHHHHHhhHHHh
Confidence            3455556554443   33456788888888887776554     3678899999877       5789999999999999


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV  261 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  261 (418)
                      .+  ++..     .....|+++|+..++.-....-.+|..|.   ..+.        .|.+..|..-+.++  ++.+++.
T Consensus        94 k~--~~i~-----kiaDvL~QlLqtdd~~E~~~V~~sL~sll---k~Dp--------k~tl~~lf~~i~~~--~e~~Rer  153 (507)
T 3u0r_A           94 TG--ENLP-----RVADILTQLLQTDDSAEFNLVNNALLSIF---KMDA--------KGTLGGLFSQILQG--EDIVRER  153 (507)
T ss_dssp             CT--TCHH-----HHHHHHHHHTTCCCHHHHHHHHHHHHHHH---HHCH--------HHHHHHHHHHHHHS--CHHHHHH
T ss_pred             hh--hhhh-----hHHHHHHHHHhccchHHHHHHHHHHHHHH---hcCh--------HHHHHHHHHHHccc--chHHHHH
Confidence            76  2222     34678899999988877777777888873   2221        34555566666666  6788888


Q ss_pred             HHHHHHHH
Q 014817          262 GIKALFAL  269 (418)
Q Consensus       262 a~~aL~~L  269 (418)
                      ++.-|..=
T Consensus       154 ~lkFi~~k  161 (507)
T 3u0r_A          154 AIKFLSTK  161 (507)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            87777543

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=88.18  E-value=1.8  Score=34.59  Aligned_cols=74  Identities=11%  Similarity=0.112  Sum_probs=60.1

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ++..+.+.|.+.++.++..|+..|-.+.. .......++.+...+..|..++... ++.++++...++...+...+
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~-~~~Vk~kil~li~~W~~~f~  117 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTDEFK  117 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhC
Confidence            35567888888999999999998888776 4567777787888888898888665 89999999999988776543

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=88.15  E-value=15  Score=34.71  Aligned_cols=182  Identities=15%  Similarity=0.082  Sum_probs=102.5

Q ss_pred             HHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhh-hHHhhcChHHHHHHHhhccccccc----CCChhHHHHHHHHHhcC
Q 014817          106 TLLNQASSESNTYGSRLSALRRLRGLARDSDKNR-SLISSHNVRAILSQVFFTNINVKT----ASSPELAHESLALLVMF  180 (418)
Q Consensus       106 ~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~-~~i~~~g~i~~Lv~lL~~~~~~~~----~~~~~v~~~a~~~L~~l  180 (418)
                      ..|+.|++.... .....-+..|+...+.++..+ ..|. .||+..|+.+|..-.....    ..+...+..++.+|..+
T Consensus         8 ~yv~~L~~~~~~-~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal   85 (386)
T 2bnx_A            8 MYIQELRSGLRD-MHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF   85 (386)
T ss_dssp             HHHHHHTSCCCH-HHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccch-HHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            456677665322 111234555555444443322 2343 7889999999854211000    01345677788888877


Q ss_pred             CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh--h-hhHhh---------chhhhHHHHHHH
Q 014817          181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE--L-RAQIS---------NLDEIFEGVIDI  248 (418)
Q Consensus       181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~--~-~~~i~---------~~~g~i~~Lv~l  248 (418)
                      ..........+...+++..|+..|.+.++.++..++.+|..++   ...+  . ...+-         ....-...|++.
T Consensus        86 mN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc---~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~  162 (386)
T 2bnx_A           86 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALC---ILPQPEDMNERVLEAMTERAEMDEVERFQPLLDG  162 (386)
T ss_dssp             TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHH---TCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHH
T ss_pred             hCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHH---cCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence            6666333444456789999999999999999999998888884   3222  2 22221         001234457777


Q ss_pred             hhcCCCChhhhHHHHHHHHHHccccc-------cHHHHHHcCchHHHHHHhcC
Q 014817          249 LKNLSSYPRGLKVGIKALFALCLVKQ-------TRYKAVAAGAAETLVDRLAD  294 (418)
Q Consensus       249 L~~~~~~~~~~~~a~~aL~~L~~~~~-------n~~~i~~~G~v~~Lv~lL~~  294 (418)
                      +.+.. +.+.+.++...+-.|..+.+       -|..+...|..+. +.-|..
T Consensus       163 l~~~~-~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~i-l~~Lr~  213 (386)
T 2bnx_A          163 LKSGT-SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELRE  213 (386)
T ss_dssp             TSTTS-CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHHH-HHHHTT
T ss_pred             HHcCC-hHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHHH-HHHHhc
Confidence            76542 45555555555555544433       2445555665555 455553

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=87.63  E-value=1.6  Score=38.11  Aligned_cols=75  Identities=11%  Similarity=0.197  Sum_probs=61.6

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ++..|.+.|.+.++.++..|+.+|-.+.. .......++.+...+..|..++....+..+|+++..+++..+...+
T Consensus        46 a~ral~krl~~~n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  121 (226)
T 3zyq_A           46 AVNSIKKKVNDKNPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAHAFR  121 (226)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhC
Confidence            35567788888999999999999888887 4456777788888888888888776688999999999998887543

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=86.40  E-value=16  Score=33.90  Aligned_cols=128  Identities=10%  Similarity=0.048  Sum_probs=94.4

Q ss_pred             HHHHccccc-cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChHHHH
Q 014817          266 LFALCLVKQ-TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDRATE  343 (418)
Q Consensus       266 L~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~  343 (418)
                      |.||-.++. ...-++++++|..+-..+.-.+.++.....++|...+....-...-.  ...+|-++..+.. +++++--
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPDDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCCHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCCcceEE
Confidence            445555554 56778999999999999998888888888888887775433222112  2567778887754 7888888


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC------CCHHHHHHHHHHHHHH
Q 014817          344 YAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD------CTDRAKRKAQLLLKLL  395 (418)
Q Consensus       344 ~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~------~~~~~~~~A~~~L~~l  395 (418)
                      ...+.|.|+.++.....+..+..|++..|...+..-      ....-|..|+.++.|.
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~  401 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNC  401 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHH
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHH
Confidence            999999999998888899999999999999888532      1244455566665543

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=85.61  E-value=3.3  Score=39.32  Aligned_cols=117  Identities=19%  Similarity=0.145  Sum_probs=80.6

Q ss_pred             cCchHHHHHHhcC----C-------CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHH
Q 014817          282 AGAAETLVDRLAD----F-------DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALA  350 (418)
Q Consensus       282 ~G~v~~Lv~lL~~----~-------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~  350 (418)
                      .||+..|+.+|..    +       +......++.+|..|..+..|...+..+..++..++..|.+.++.++..++.+|.
T Consensus        46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~  125 (386)
T 2bnx_A           46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  125 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            5677777777741    1       2244667899999999999999999999889999999888888999999999999


Q ss_pred             HHhcCCH-HH-H----------HHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          351 ALCSASE-RC-Q----------RDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       351 ~l~~~~~-~~-~----------~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      .+|..+. +. .          ....+..-+..|+..+..+.+...+-.+..++..+...
T Consensus       126 alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~  185 (386)
T 2bnx_A          126 ALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP  185 (386)
T ss_dssp             HHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCC
Confidence            9998221 11 1          11112234555666665444566666666666555544

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=85.05  E-value=3.9  Score=32.99  Aligned_cols=74  Identities=18%  Similarity=0.163  Sum_probs=61.1

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQS-----DCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ++..|.+.|.+.++.++..|+.+|-.+.. ....+..++.....+..|+.++..     ..+..+|++...+++.-+...
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  128 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  128 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHHHh
Confidence            35678888888999999999999888877 566778888888999999999952     247899999999998887754

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=85.03  E-value=0.19  Score=29.44  Aligned_cols=17  Identities=18%  Similarity=0.448  Sum_probs=13.0

Q ss_pred             cccCcCccccccCCeec
Q 014817           17 HFRCPISLELMCDPVTV   33 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~   33 (418)
                      -|.||+|+.-+..|-.+
T Consensus         5 GFiCP~C~~~l~s~~~L   21 (34)
T 3mjh_B            5 GFICPQCMKSLGSADEL   21 (34)
T ss_dssp             EEECTTTCCEESSHHHH
T ss_pred             ccCCcHHHHHcCCHHHH
Confidence            38899999888776544

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=84.62  E-value=2.8  Score=36.33  Aligned_cols=74  Identities=8%  Similarity=0.121  Sum_probs=60.3

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ++..|.+.|.+.++.++..|+.+|-.+... ......++.+...+..|..++....+..+|+++..+++.-...-
T Consensus        43 a~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f  117 (220)
T 1dvp_A           43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAF  117 (220)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCHHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHh
Confidence            345677788889999999999999998883 35577788888899999999877667899999999888887653

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=84.04  E-value=51  Score=35.60  Aligned_cols=134  Identities=7%  Similarity=0.000  Sum_probs=78.3

Q ss_pred             chHHHHHHhcC----CCHHHHHHHHHHHHHHHhcc-cchhhh-hHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHH
Q 014817          196 KITSLSSLLFH----SSIEVRVNSAALIEIVLAGM-RSQELR-AQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFAL  269 (418)
Q Consensus       196 ~i~~Lv~~L~~----~~~~~~~~a~~~L~~L~~~s-~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L  269 (418)
                      .+..+..++.+    .++.++..+.-++..|+... .+...+ ..+.  .-+...|.+.+..+  +...+..++++|.|+
T Consensus       392 ~l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~c~~~~~c~~~~v--~~i~~~l~~~~~~~--~~~~~~~~LkaLGN~  467 (1056)
T 1lsh_A          392 SLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCPDELL--QPLHDLLSQSSDRA--KEEEIVLALKALGNA  467 (1056)
T ss_dssp             HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCCGGGT--HHHHHHHHHHHHTT--CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHHhccCCCCCHHHH--HHHHHHHHHHHhcC--ChHHHHHHHHHhhcc
Confidence            45556666654    35677777777777774211 111111 0111  12344444555666  678888999999999


Q ss_pred             ccccccHHHHHHcCchHHHHHHhcC-----C--CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc--CChH
Q 014817          270 CLVKQTRYKAVAAGAAETLVDRLAD-----F--DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK--ISDR  340 (418)
Q Consensus       270 ~~~~~n~~~i~~~G~v~~Lv~lL~~-----~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~--~~~~  340 (418)
                      -..          ..++.|..++..     .  ...++..|+.+|..++...  ...      +-+.++++..+  .+..
T Consensus       468 g~p----------~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~--p~~------v~~il~~i~~n~~e~~E  529 (1056)
T 1lsh_A          468 GQP----------NSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRD--PRK------VQEIVLPIFLNVAIKSE  529 (1056)
T ss_dssp             TCG----------GGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTC--HHH------HHHHHHHHHHCTTSCHH
T ss_pred             CCh----------hHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhc--hHH------HHHHHHHHhcCCCCChH
Confidence            763          356667777642     1  2246677899998888431  111      12346666644  6777


Q ss_pred             HHHHHHHHHHH
Q 014817          341 ATEYAAGALAA  351 (418)
Q Consensus       341 ~~~~A~~~L~~  351 (418)
                      ++-.|+.+|..
T Consensus       530 vRiaA~~~Lm~  540 (1056)
T 1lsh_A          530 LRIRSCIVFFE  540 (1056)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            88888877765

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=83.71  E-value=3.4  Score=34.25  Aligned_cols=74  Identities=20%  Similarity=0.187  Sum_probs=60.5

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQS-----DCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ++..|.+.|.+.++.++..|+.+|-.+... ......++.+...+..|+.++..     ..+..+|+++..+++.-....
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  130 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  130 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            356788888889999999999999888873 46778888888999999999852     236899999999998887654

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=83.45  E-value=19  Score=38.75  Aligned_cols=100  Identities=8%  Similarity=-0.066  Sum_probs=58.6

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC-----CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhh
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH-----SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDE  240 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~-----~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g  240 (418)
                      +...++.|+.+++.++..-......-.-...++.|+.+...     ..+-++..+++++...+  .-.......+   ..
T Consensus       466 ~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~--~~~~~~~~~l---~~  540 (1049)
T 3m1i_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYP--RFLKAHWNFL---RT  540 (1049)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCH--HHHHHCHHHH---HH
T ss_pred             CHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHH--HHHHhHHHHH---HH
Confidence            56778999999998874321110000011234444443321     12333435777777662  1112222223   34


Q ss_pred             hHHHHHHHhhcCCCChhhhHHHHHHHHHHccc
Q 014817          241 IFEGVIDILKNLSSYPRGLKVGIKALFALCLV  272 (418)
Q Consensus       241 ~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~  272 (418)
                      +++.|+..+.+.  ++.++..|+.++.+++..
T Consensus       541 vl~~ll~~l~~~--~~~V~~~A~~al~~l~~~  570 (1049)
T 3m1i_C          541 VILKLFEFMHET--HEGVQDMACDTFIKIVQK  570 (1049)
T ss_dssp             HHHHHHHHTTSS--CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHHHHH
Confidence            788888888876  799999999999999974

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=83.38  E-value=3.3  Score=33.37  Aligned_cols=74  Identities=16%  Similarity=0.168  Sum_probs=61.0

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQS-----DCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ++..|.+.|.+.++.++..|+.+|-.+.. ....+..++.+...+..|+.++..     ..+..+|++...+++.-+...
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f  118 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            45678888889999999999999988887 457788888888999999888863     237899999999998887654

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=82.78  E-value=11  Score=32.73  Aligned_cols=144  Identities=14%  Similarity=0.091  Sum_probs=91.6

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcc-cccc
Q 014817          197 ITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCL-VKQT  275 (418)
Q Consensus       197 i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~-~~~n  275 (418)
                      ++..-.+.++...++|..|+.+|..+   .         .. ...++.+...+..+. +-.+++.++.++..++. .+..
T Consensus        73 ~~la~~L~~~~~deVR~~Av~lLg~~---~---------~~-~~~L~~ir~~va~D~-~WrVre~lA~a~~~~~~~~~pe  138 (240)
T 3l9t_A           73 KKLAFLAYQSDVYQVRMYAVFLFGYL---S---------KD-KEILIFMRDEVSKDN-NWRVQEVLAKAFDEFCKKIEYK  138 (240)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHT---T---------TS-HHHHHHHHHTGGGCS-CHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHhCcchHHHHHHHHHHHhc---c---------Cc-HHHHHHHHHHhCCCC-CccHHHHHHHHHHHHHHhcCHH
Confidence            34444556777789999998866655   2         11 336666666444443 78999999999999885 3332


Q ss_pred             HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhcc-CChHHHHHHHhcCChHHHHHHHHHHHHHhc
Q 014817          276 RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHA-LTVPLLVKTILKISDRATEYAAGALAALCS  354 (418)
Q Consensus       276 ~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~-g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~  354 (418)
                      +       .++.+.....+++..++..|...+.--+..+    ...... -.++.|-.+..+.+.-+|....+.|..+++
T Consensus       139 ~-------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~----~~k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK  207 (240)
T 3l9t_A          139 K-------ALPIIDEWLKSSNLHTRRAATEGLRIWTNRP----YFKENPNEAIRRIADLKEDVSEYVRKSVGNALRDISK  207 (240)
T ss_dssp             T-------THHHHHHHHHCSSHHHHHHHHHHTCSGGGST----TTTTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHT
T ss_pred             H-------HHHHHHHHhcCCCHHHHHHHHHhhHHHhccc----hhhcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhh
Confidence            2       5677788888888888777766554212111    000110 122333333334788899999999999999


Q ss_pred             CCHHHHHHHHh
Q 014817          355 ASERCQRDAVS  365 (418)
Q Consensus       355 ~~~~~~~~~~~  365 (418)
                      .+|+.....++
T Consensus       208 ~~Pd~V~~~~~  218 (240)
T 3l9t_A          208 KFPDLVKIELK  218 (240)
T ss_dssp             TCHHHHHHHHH
T ss_pred             hCHHHHHHHHH
Confidence            88887665544

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=82.56  E-value=8  Score=41.50  Aligned_cols=216  Identities=8%  Similarity=-0.016  Sum_probs=118.8

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhc-c----cCCchHHHHHHhc-----CCCHHHHHHHHHHHHHHHhcccchhhhhHh
Q 014817          166 SPELAHESLALLVMFPLTETECMEIA-S----DADKITSLSSLLF-----HSSIEVRVNSAALIEIVLAGMRSQELRAQI  235 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i-~----~~g~i~~Lv~~L~-----~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i  235 (418)
                      +....|.|+.+|+.++.+-..+...+ -    -+..++.|+.+++     ..++.++..+++++...   +..=.     
T Consensus       456 ~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~~~~~l~ry---s~~~~-----  527 (980)
T 3ibv_A          456 SWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLLYMEILVRY---ASFFD-----  527 (980)
T ss_dssp             HHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHHHHHHHHHT---GGGGG-----
T ss_pred             CHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHH---HHHHh-----
Confidence            45678888888888775432211111 1    1224455555555     46799999999999888   32211     


Q ss_pred             hchhhhHHHHHHHhhc--CCC--ChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcC-------C-C-c-----
Q 014817          236 SNLDEIFEGVIDILKN--LSS--YPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLAD-------F-D-K-----  297 (418)
Q Consensus       236 ~~~~g~i~~Lv~lL~~--~~~--~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~-------~-~-~-----  297 (418)
                       .....+++++..+-+  +..  ++.++..|+.++.+++.....  .+  .+-++.++..+..       + + .     
T Consensus       528 -~~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~~~~--~L--~~~~~~il~~l~~lL~~~~~~~~~~~~~~~  602 (980)
T 3ibv_A          528 -YESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKSIKK--QV--VNYTESSLAMLGDLLNISVSPVTDMDAPVP  602 (980)
T ss_dssp             -TCCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHHTTT--TC--SSSHHHHHHHTTGGGCCCCCCCCC--CSSC
T ss_pred             -cCchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHHhhH--Hh--hhHHHHHHHHHHHhhcCcCCCCCccccccc
Confidence             123355555555444  211  578999999999999865432  12  2344555554431       0 0 0     


Q ss_pred             --------------ccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhc-----C---ChHH-HHHHHHHHHHHh
Q 014817          298 --------------CDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILK-----I---SDRA-TEYAAGALAALC  353 (418)
Q Consensus       298 --------------~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~-----~---~~~~-~~~A~~~L~~l~  353 (418)
                                    -..-.+++.|..... .++.+....+  ..+.++++-+..     .   +... -.+.+.++.+++
T Consensus       603 ~~~~~~~~~~~~~ql~L~eaig~li~~~~~~~e~~~~~l~--~ll~pl~~~l~~~l~~~~~~~~~~~~i~~~i~al~~la  680 (980)
T 3ibv_A          603 TLNSSIRNSDFNSQLYLFETVGVLISSGNLTPEEQALYCD--SLINALIGKANAALSSDLSALENIISVYCSLMAIGNFA  680 (980)
T ss_dssp             CHHHHHHTTTHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH--HHHHHHHHHHHHHHTTSCC--CHHHHHHHHHHHHHHHH
T ss_pred             chhhhcccCCchHHHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHHHHHHHHhhcccCccHHHHHHHHHHHHHHHh
Confidence                          012345555544443 3555555554  456666665543     1   1111 125566667777


Q ss_pred             cCCHH-------HHHHHHhcChHHHHHHHHhh-CCCHHHHHHHHHHHHHHHhh
Q 014817          354 SASER-------CQRDAVSAGVLTQLLLLVQS-DCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       354 ~~~~~-------~~~~~~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L~~l~~~  398 (418)
                      ++-+.       ....+  ..+.+.++..+.. +.+..++++++..++.+-..
T Consensus       681 kgf~~~~~~~~p~~~~f--~~~~~~il~~l~~~~~~~~irea~~~~~~r~i~~  731 (980)
T 3ibv_A          681 KGFPARGSEEVAWLASF--NKASDEIFLILDRMGFNEDIRGAVRFTSGRIINV  731 (980)
T ss_dssp             HTSCSCC-CCCSHHHHH--HHHHHHHHHHHHHSCCSHHHHHHHHHHHHHHTTT
T ss_pred             ccCCcccCCCCcHHHHH--HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHH
Confidence            63111       11111  2345555566653 34789999999999887654

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=82.48  E-value=19  Score=38.87  Aligned_cols=124  Identities=11%  Similarity=-0.001  Sum_probs=75.6

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhc-----CCCChhhhHHHHHHHHHHccccc
Q 014817          200 LSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKN-----LSSYPRGLKVGIKALFALCLVKQ  274 (418)
Q Consensus       200 Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~-----~~~~~~~~~~a~~aL~~L~~~~~  274 (418)
                      |.+.+..++.+-+..++.+|+|+   ..           .+.++.|..++..     ......++.+|++||.+++....
T Consensus       445 l~~~~~~~~~~~~~~~LkaLGN~---g~-----------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p  510 (1056)
T 1lsh_A          445 LSQSSDRAKEEEIVLALKALGNA---GQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP  510 (1056)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH---TC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH
T ss_pred             HHHHHhcCChHHHHHHHHHhhcc---CC-----------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch
Confidence            33444667788888899999999   22           2356677777642     11134677889999999985432


Q ss_pred             cHHHHHHcCchHHHHHHhcC--CCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CChHHHHHHHHHHHH
Q 014817          275 TRYKAVAAGAAETLVDRLAD--FDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-ISDRATEYAAGALAA  351 (418)
Q Consensus       275 n~~~i~~~G~v~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~~~~~~~A~~~L~~  351 (418)
                      ..       +-+.++++..+  .+.+++..|+.+|..-.-...          .+..++..+.. .+..+.......|.+
T Consensus       511 ~~-------v~~il~~i~~n~~e~~EvRiaA~~~Lm~t~P~~~----------~l~~ia~~l~~E~~~QV~sfv~S~l~s  573 (1056)
T 1lsh_A          511 RK-------VQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVA----------LVSMVAVRLRREPNLQVASFVYSQMRS  573 (1056)
T ss_dssp             HH-------HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHH----------HHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HH-------HHHHHHHHhcCCCCChHHHHHHHHHHHHHCcCHH----------HHHHHHHHHhhCchHHHHHHHHHHHHH
Confidence            11       22346677743  355666666655543221112          23344445555 677788888888888


Q ss_pred             Hhc
Q 014817          352 LCS  354 (418)
Q Consensus       352 l~~  354 (418)
                      ++.
T Consensus       574 la~  576 (1056)
T 1lsh_A          574 LSR  576 (1056)
T ss_dssp             HTT
T ss_pred             HHh
Confidence            887

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=81.19  E-value=6  Score=34.50  Aligned_cols=148  Identities=11%  Similarity=0.011  Sum_probs=91.1

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF  180 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l  180 (418)
                      .+++..+...|...+.+ +.|..|+..|..+ ...         ...++.+...+..+.      +-.|++.+..++..+
T Consensus        69 ~~~~~~la~~L~~~~~d-eVR~~Av~lLg~~-~~~---------~~~L~~ir~~va~D~------~WrVre~lA~a~~~~  131 (240)
T 3l9t_A           69 GEYIKKLAFLAYQSDVY-QVRMYAVFLFGYL-SKD---------KEILIFMRDEVSKDN------NWRVQEVLAKAFDEF  131 (240)
T ss_dssp             HHHHHHHHHHHHTCSSH-HHHHHHHHHHHHT-TTS---------HHHHHHHHHTGGGCS------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcch-HHHHHHHHHHHhc-cCc---------HHHHHHHHHHhCCCC------CccHHHHHHHHHHHH
Confidence            35566777788766544 3466677766655 211         124555555444443      678999988887766


Q ss_pred             CC-ChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817          181 PL-TETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       181 ~~-~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      +. ...+        ..++.+...+.+.+..+|..|+..++--   +....  ... .-.-+++.|-.+..+.  +.-++
T Consensus       132 ~~~~~pe--------~~l~~~~~W~~d~n~~VRR~Ase~~rpW---~~~~~--~k~-dp~~ll~iL~~L~~D~--s~yVr  195 (240)
T 3l9t_A          132 CKKIEYK--------KALPIIDEWLKSSNLHTRRAATEGLRIW---TNRPY--FKE-NPNEAIRRIADLKEDV--SEYVR  195 (240)
T ss_dssp             HHHHCTT--------TTHHHHHHHHHCSSHHHHHHHHHHTCSG---GGSTT--TTT-CHHHHHHHHHTTTTCS--CHHHH
T ss_pred             HHhcCHH--------HHHHHHHHHhcCCCHHHHHHHHHhhHHH---hccch--hhc-CHHHHHHHHHHhcCCh--HHHHH
Confidence            53 1101        2578888999999999999988777654   22111  111 1122344444444444  77899


Q ss_pred             HHHHHHHHHHccccc-cHHHHHH
Q 014817          260 KVGIKALFALCLVKQ-TRYKAVA  281 (418)
Q Consensus       260 ~~a~~aL~~L~~~~~-n~~~i~~  281 (418)
                      ++..++|..++..+. -...+++
T Consensus       196 KSVan~LrD~SK~~Pd~V~~~~~  218 (240)
T 3l9t_A          196 KSVGNALRDISKKFPDLVKIELK  218 (240)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhCHHHHHHHHH
Confidence            999999999997764 3344443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	418
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	3e-23
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	7e-18
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	2e-13
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-12
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-10
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	4e-08
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	4e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	6e-06
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-04
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	2e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-04
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-04
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.002
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	0.004

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 90.5 bits (224), Expect = 3e-23
 Identities = 39/74 (52%), Positives = 50/74 (67%)

Query: 11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN 70
          S + P +FRCPISLELM DPV V TGQTY+R SI+ W+  G+ TCP ++  L    L PN
Sbjct: 2  SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPN 61

Query: 71 HTLRRLIQDWCVAN 84
          + L+ LI  WC +N
Sbjct: 62 YVLKSLIALWCESN 75

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 75.7 bits (185), Expect = 7e-18
 Identities = 29/72 (40%), Positives = 37/72 (51%)

Query: 13 QIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHT 72
           IP +    IS ELM +P    +G TYDR  IE  +       PVTRSPLT   LIPN  
Sbjct: 3  DIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLA 62

Query: 73 LRRLIQDWCVAN 84
          ++ +I  +   N
Sbjct: 63 MKEVIDAFISEN 74

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.7 bits (154), Expect = 2e-13
 Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 2/82 (2%)

Query: 6  EPLDLSVQIPYHFRCPISLELMCDPVTVCTGQ-TYDRPSIESWVATGNTTCPVTRSPLTD 64
          +  +        F  PI   LMCDPV + + + T DR +I   + +   T P  RSPLT 
Sbjct: 11 QEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTM 69

Query: 65 FTLIPNHTLRRLIQDWCVANRS 86
            + PN  L+  IQ W    + 
Sbjct: 70 DQIRPNTELKEKIQRWLAERKQ 91

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 61.2 bits (148), Expect = 2e-12
 Identities = 14/64 (21%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVAT--GNTTCPVTRSPLTDFTLIPNHTLR 74
             CPI LEL+ +PV+      + +  +   +    G + CP+ ++ +T  +L  +    
Sbjct: 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFS 80

Query: 75 RLIQ 78
          +L++
Sbjct: 81 QLVE 84

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 14/65 (21%), Positives = 21/65 (32%), Gaps = 1/65 (1%)

Query: 6  EPLDLSVQIPYHFR-CPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD 64
          E  +L  ++   F+ C I  E   D      G       + SW  +    CP  R  +  
Sbjct: 11 EQYELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 70

Query: 65 FTLIP 69
             I 
Sbjct: 71 TEPIV 75

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 48.4 bits (115), Expect = 4e-08
 Identities = 14/66 (21%), Positives = 20/66 (30%)

Query: 4  SLEPLDLSVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63
           L  +D          C I   ++ DPV       + R  I   +    + CP  R P  
Sbjct: 10 KLLAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCF 69

Query: 64 DFTLIP 69
             L  
Sbjct: 70 PTDLES 75

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.7 bits (97), Expect = 4e-06
 Identities = 11/51 (21%), Positives = 23/51 (45%), Gaps = 2/51 (3%)

Query: 20 CPISLELMCDPVTVC-TGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIP 69
          C IS ++   PV    +   +++  +E +V       P+T  PL+   ++ 
Sbjct: 3  CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 52

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 6e-06
 Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 4/67 (5%)

Query: 13 QIPYHFRCPISLELMCDPVTVCT-GQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNH 71
          ++    RC     ++ +PV +      +    +   + TG   C    +P     L  N 
Sbjct: 18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGTGCPVC---YTPAWIQDLKINR 74

Query: 72 TLRRLIQ 78
           L  +IQ
Sbjct: 75 QLDSMIQ 81

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (86), Expect = 2e-04
 Identities = 8/45 (17%), Positives = 14/45 (31%), Gaps = 4/45 (8%)

Query: 19 RCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63
          RC         P  +    T     +E+        CP+ ++P  
Sbjct: 8  RCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 37.6 bits (87), Expect = 2e-04
 Identities = 13/47 (27%), Positives = 19/47 (40%), Gaps = 2/47 (4%)

Query: 19 RCPISLELMCDPVTVCT-GQTYDRPSIESWVATGNTTCPVTRSPLTD 64
          RCPI LE   +          +    I  W+   N TCP+ + P+  
Sbjct: 7  RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES 52

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 3e-04
 Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 6/135 (4%)

Query: 262 GIKALFALCLVKQ--TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAE 319
            I  L  L +     T+ +    G  +  V+ +   +    E     + +L R       
Sbjct: 398 AIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE--IVEGCTGALHILARDVHNRIV 455

Query: 320 FAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD 379
                 T+PL V+ +    +     AAG L  L    E  +    + G    L  L+ S 
Sbjct: 456 IRGLN-TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEA-IEAEGATAPLTELLHSR 513

Query: 380 CTDRAKRKAQLLLKL 394
               A   A +L ++
Sbjct: 514 NEGVATYAAAVLFRM 528

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 4e-04
 Identities = 17/116 (14%), Positives = 37/116 (31%)

Query: 286 ETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYA 345
              V  L+  D+         ++  C       +       +  LV  +   +    + A
Sbjct: 5   PKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAA 64

Query: 346 AGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQ 401
           AGAL  L   S   + +      + + + L++       +++   LL  L  +   
Sbjct: 65  AGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 9/50 (18%), Positives = 13/50 (26%), Gaps = 5/50 (10%)

Query: 19 RCPISLELMCDP-----VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT 63
           CP              +    G T     ++     G   CP   +PL 
Sbjct: 5  GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.2 bits (75), Expect = 0.004
 Identities = 10/49 (20%), Positives = 14/49 (28%), Gaps = 4/49 (8%)

Query: 20 CPISLELMCDPVTVCT----GQTYDRPSIESWVATGNTTCPVTRSPLTD 64
          CP+ +E +            G    R          N  CP  R P  +
Sbjct: 3  CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 51

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	418
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.94
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.93
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.92
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.92
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.88
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.87
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.84
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.83
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.82
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.8
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.61
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.56
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.55
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.51
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.38
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.22
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.22
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.09
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.99
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	98.93
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.68
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.55
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.52
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.52
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.51
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.44
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.43
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.42
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.42
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.36
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.26
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.1
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.09
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.0
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.97
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.93
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.74
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.71
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.7
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.7
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.61
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.6
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.35
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.3
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.26
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.93
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.56
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.15
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	92.0
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	91.35
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	91.07
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	91.0
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	90.28
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	90.2
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	89.42
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	89.27
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	85.3
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	84.56
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	84.09
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	83.52
d6rxna_	45	Rubredoxin {Desulfovibrio desulfuricans, strain 27	80.37
d1ibia2	31	Cysteine-rich (intestinal) protein, CRP, CRIP {Jap	80.19

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=1e-24  Score=212.35  Aligned_cols=285  Identities=12%  Similarity=0.077  Sum_probs=238.2

Q ss_pred             ChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChh-hhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHh
Q 014817          100 EPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDK-NRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLV  178 (418)
Q Consensus       100 ~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~-~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~  178 (418)
                      ..+.|+.+++.|++++.  +.+..|+.+++++.+.+.. ..+.+++.|++|.|+++|.+.+      +++++..|+++|.
T Consensus        11 ~~~~i~~lv~~l~s~~~--~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~------~~~v~~~a~~~L~   82 (434)
T d1q1sc_          11 VNWSVEDIVKGINSNNL--ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTD------CSPIQFESAWALT   82 (434)
T ss_dssp             SSCCHHHHHHHHTSSCH--HHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGG------GHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCC------CHHHHHHHHHHHH
Confidence            34579999999999854  4568899999988754332 3467889999999999997654      5789999999999


Q ss_pred             cCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhH----------------
Q 014817          179 MFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIF----------------  242 (418)
Q Consensus       179 ~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i----------------  242 (418)
                      +++...++.+..+.+.|+++.|+.+|++++.++++.++++|.+++  ..+++.+..+.. .|++                
T Consensus        83 ~la~~~~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~--~~~~~~~~~i~~-~~~~~~l~~~l~~~~~~~~~  159 (434)
T d1q1sc_          83 NIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIA--GDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLA  159 (434)
T ss_dssp             HHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSC
T ss_pred             HHhcCChhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHh--ccchHHHHHHHH-hhhhhHHHHHHHhcccccch
Confidence            998776678889999999999999999999999999999999995  344444444432 3344                


Q ss_pred             -------------------------------HHHHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHH
Q 014817          243 -------------------------------EGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVD  290 (418)
Q Consensus       243 -------------------------------~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~  290 (418)
                                                     +.|+.++.++  +++++..++++|.+|+..+. ....+.+.|+++.|++
T Consensus       160 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~  237 (434)
T d1q1sc_         160 CGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVK  237 (434)
T ss_dssp             HHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhcc--ccchhhhHHhhhcccchhhhhhHHHHhhcccchhccc
Confidence                                           4444444444  77888999999999997765 5555678899999999


Q ss_pred             HhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChH
Q 014817          291 RLADFDKCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVL  369 (418)
Q Consensus       291 lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i  369 (418)
                      ++.+++..++..++.+|.+++. +++.+..+.+. |+++.+++++.+.++.+++.|+++|.+++..++.....+.+.|++
T Consensus       238 ll~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~-~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i  316 (434)
T d1q1sc_         238 LLGATELPIVTPALRAIGNIVTGTDEQTQKVIDA-GALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLV  316 (434)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCH
T ss_pred             ccccchhhhhhchhhhhhhHHhhhhHHHHHHHhc-cccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhH
Confidence            9999999999999999999986 45677778874 999999999999999999999999999999888889989999999


Q ss_pred             HHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          370 TQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       370 ~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      +.++.++.++ +..++..|.++|.++..+.
T Consensus       317 ~~li~~l~~~-~~~v~~~a~~~l~nl~~~~  345 (434)
T d1q1sc_         317 PFLVGVLSKA-DFKTQKEAAWAITNYTSGG  345 (434)
T ss_dssp             HHHHHHHHSS-CHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHhcc-ChHHHHHHHHHHHHHHhcC
Confidence            9999999877 8999999999999998764

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=2.9e-24  Score=213.97  Aligned_cols=284  Identities=12%  Similarity=0.104  Sum_probs=247.4

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +-++.|+..|+...+ ...+..|++.|.+++..++.....+.+.|+++.++.+|.++       +.++++.|+++|++++
T Consensus       119 g~i~~Lv~~l~~~~~-~~iq~~a~~~L~ni~~~~~~~~~~~~~~g~i~~l~~lL~s~-------~~~i~~~a~~~L~nia  190 (503)
T d1wa5b_         119 GVVPRLVEFMRENQP-EMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG-------SVEVKEQAIWALGNVA  190 (503)
T ss_dssp             TCHHHHHHTTSTTSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHC-------CHHHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHcCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHhcCC-------ChhHHHHHHHHHHHHh
Confidence            457889999886543 33467899999999998888888999999999999999887       5799999999999999


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV  261 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  261 (418)
                      .+..++|..+.+.|+++.|+.++.+.+.+++..++++|.++   +.............|+++.|+.++.+.  +++++..
T Consensus       191 ~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl---~~~~~~~~~~~~~~~~l~~l~~~l~~~--d~~~~~~  265 (503)
T d1wa5b_         191 GDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL---CRGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVD  265 (503)
T ss_dssp             TTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHH---HCCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHH
T ss_pred             hhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHH---hcCCccchHHHHHHHHHHHHHHHhccc--cHHHHHH
Confidence            87778999999999999999999999999999999999999   444333222222367999999999988  8999999


Q ss_pred             HHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHh-HHHHHHhccCChHHHHHHHhcCCh
Q 014817          262 GIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPA-GCAEFAEHALTVPLLVKTILKISD  339 (418)
Q Consensus       262 a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~~~  339 (418)
                      ++++|.+|+.... ....+++.|+++.++.++.+++..+...++.+|.+++.+.+ ....+.. .|+++.+..++.+.++
T Consensus       266 ~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~al~~l~nl~~~~~~~~~~~~~-~~~l~~l~~ll~~~~~  344 (503)
T d1wa5b_         266 ACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVIN-AGVLPALRLLLSSPKE  344 (503)
T ss_dssp             HHHHHHHHHSSCHHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCSCH
T ss_pred             HHHHHHhhccCCchhhhhhhhhhhhhhhhhcccCCchhhhhhHHHHHHHHHHHHHHHHHhhhc-cchHHHHHHHhcCCCH
Confidence            9999999997654 55778899999999999999999999999999999996544 4555566 5999999999999999


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          340 RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       340 ~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      .++..++++|.|++.+++.....+.+.|+++.++.++.++ +..++..|.++|.++..+..
T Consensus       345 ~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~~~~  404 (503)
T d1wa5b_         345 NIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASSGGL  404 (503)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHhccc
Confidence            9999999999999998999999999999999999999888 99999999999999997643

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.3e-25  Score=220.70  Aligned_cols=282  Identities=15%  Similarity=0.118  Sum_probs=244.2

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +-++.+++.|...+. .+.+..|+..|..++. ++.++..+++.|+++.|+.+|.++       +++++..|+++|.+++
T Consensus        59 ~~v~~l~~~L~~~~~-~~~~~~a~~~L~~l~~-~~~~~~~i~~~g~i~~Li~lL~~~-------~~~v~~~a~~aL~~l~  129 (529)
T d1jdha_          59 QMVSAIVRTMQNTND-VETARCTAGTLHNLSH-HREGLLAIFKSGGIPALVKMLGSP-------VDSVLFYAITTLHNLL  129 (529)
T ss_dssp             HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCCC-HHHHHHHHHHHHHHhC-CchhHHHHHHCCCHHHHHHHhCCC-------CHHHHHHHHHHHHHhh
Confidence            457888988876543 3346789999999985 678899999999999999999877       5899999999999998


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHH
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKV  261 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~  261 (418)
                      .+.+..+..+.+.|+|+.|+.+|++++.+++..++++|.+++  ..+++.+..+.. .|++++|+.++.... ....+..
T Consensus       130 ~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~--~~~~~~~~~~~~-~~~~~~L~~ll~~~~-~~~~~~~  205 (529)
T d1jdha_         130 LHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA--YGNQESKLIILA-SGGPQALVNIMRTYT-YEKLLWT  205 (529)
T ss_dssp             HHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTHHHHHHHHHHHCC-CHHHHHH
T ss_pred             cccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHh--hhhhHHHHHHHh-cccchHHHHHHHhhh-hHHHHHH
Confidence            877677888889999999999999999999999999999995  345666666654 789999999998774 6788999


Q ss_pred             HHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHH
Q 014817          262 GIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRA  341 (418)
Q Consensus       262 a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~  341 (418)
                      +++++.+++.+.+++..+++.|+++.|+.++.+++..++..++++|.+++......  ... .|+++.|++++.+++..+
T Consensus       206 ~~~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~l~~ls~~~~~~--~~~-~~~i~~Lv~ll~~~~~~~  282 (529)
T d1jdha_         206 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQ--EGM-EGLLGTLVQLLGSDDINV  282 (529)
T ss_dssp             HHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHHTTCTTC--SCC-HHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHhhhhccccccchhhhhhhhhhHHHHhcccchhhhhhhhhHHHhccccccch--hhh-hhcchhhhhhcccccHHH
Confidence            99999999999999999999999999999999999999999999999998543322  222 378999999999999999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhh-CCCHHHHHHHHHHHHHHHhhC
Q 014817          342 TEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQS-DCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       342 ~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~-~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ++.|+++|++++.++++.+..+.+.|+++.|+.++.. ...+.+++.|..+|++|....
T Consensus       283 ~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~  341 (529)
T d1jdha_         283 VTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRH  341 (529)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSS
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchh
Confidence            9999999999999889999999999999999998864 336889999999999998653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.4e-24  Score=208.38  Aligned_cols=288  Identities=13%  Similarity=0.122  Sum_probs=233.9

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      .|+.||+.|++++++.  +..|++.|.++|.+++++|..+++.|+||.|+++|+++       ++++++.|+.+|.+|+.
T Consensus         3 ~ip~lv~~L~~~~~~~--~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~-------~~~v~~~a~~aL~~L~~   73 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKY--QAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSP-------NQNVQQAAAGALRNLVF   73 (457)
T ss_dssp             CHHHHHHHHHSSCTHH--HHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSS-------CHHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHhCCCCHHH--HHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCC-------CHHHHHHHHHHHHHHHc
Confidence            4789999999987654  58999999999999999999999999999999999877       68999999999999998


Q ss_pred             ChhHHHhhcccCCchHHHHHHhcC-CCHHHHHHHHHHHHHHHhc------------------------------------
Q 014817          183 TETECMEIASDADKITSLSSLLFH-SSIEVRVNSAALIEIVLAG------------------------------------  225 (418)
Q Consensus       183 ~~~~~~~~i~~~g~i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~------------------------------------  225 (418)
                      ++++++..+.+.|+++.|+.++.+ .+.+++..++++|.+++..                                    
T Consensus        74 ~~~~~~~~i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  153 (457)
T d1xm9a1          74 RSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSRE  153 (457)
T ss_dssp             SCHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------
T ss_pred             CCHHHHHHHHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcc
Confidence            777899999999999999998865 5688888888888888420                                    


Q ss_pred             -----------------ccchhhhhHhhchhhhHHHHHHHhhcCC-----------------------------------
Q 014817          226 -----------------MRSQELRAQISNLDEIFEGVIDILKNLS-----------------------------------  253 (418)
Q Consensus       226 -----------------s~~~~~~~~i~~~~g~i~~Lv~lL~~~~-----------------------------------  253 (418)
                                       +.+++++..+....|+++.|+.++++..                                   
T Consensus       154 ~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~  233 (457)
T d1xm9a1         154 VVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQL  233 (457)
T ss_dssp             CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHH
T ss_pred             cccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence                             1111222222233467777776653100                                   


Q ss_pred             --------------------------------------------------------------CChhhhHHHHHHHHHHcc
Q 014817          254 --------------------------------------------------------------SYPRGLKVGIKALFALCL  271 (418)
Q Consensus       254 --------------------------------------------------------------~~~~~~~~a~~aL~~L~~  271 (418)
                                                                                    .++..+..+.+++.+++.
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~  313 (457)
T d1xm9a1         234 EYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTA  313 (457)
T ss_dssp             HHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT
T ss_pred             HhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhh
Confidence                                                                          034556677778888876


Q ss_pred             ccc------cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc------CCh
Q 014817          272 VKQ------TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK------ISD  339 (418)
Q Consensus       272 ~~~------n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~------~~~  339 (418)
                      ...      .+..+.+.|+++.|+++|.+++..++..++.+|.+|+.+++++..+.+  ++++.++.++..      .++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~--~~i~~li~~L~~~~~~~~~~~  391 (457)
T d1xm9a1         314 SKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTSNSE  391 (457)
T ss_dssp             CSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCSTTHH
T ss_pred             ccccchHHHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHH--hhHHHHHHHHhccccCcCCcH
Confidence            543      244455689999999999999999999999999999999999888875  679999998865      245


Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCCC
Q 014817          340 RATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWPQ  401 (418)
Q Consensus       340 ~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~~  401 (418)
                      .++..|+.+|.+++..+++.++.+.+.|+++.|+.++.+..++.+++.|+.+|.+|..+.+-
T Consensus       392 ~v~~~a~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~~~~  453 (457)
T d1xm9a1         392 DILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL  453 (457)
T ss_dssp             HHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSSTTC
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcCHhh
Confidence            68899999999999988999999999999999999998776899999999999999776553

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=3.3e-23  Score=201.50  Aligned_cols=283  Identities=13%  Similarity=0.114  Sum_probs=235.6

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +-++.|++.|++.+. ...+..|++.|.++++.++..+..+++.|+++.|+.+|.++       +.++++.|+++|.+++
T Consensus        56 g~i~~Lv~lL~~~~~-~~v~~~a~~~L~~la~~~~~~~~~i~~~~~i~~l~~~L~~~-------~~~~~~~a~~~L~nl~  127 (434)
T d1q1sc_          56 GLIPKFVSFLGKTDC-SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASP-------HAHISEQAVWALGNIA  127 (434)
T ss_dssp             TCHHHHHHHTTCGGG-HHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCS-------CHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHccCCC-HHHHHHHHHHHHHHhcCChhhhhHhhhccchhhhhhccccC-------CHHHHHHHHHHHHHHh
Confidence            457899999976532 23467899999999998889999999999999999999877       5899999999999998


Q ss_pred             CChhHHHhhcccCCc-----------------------------------------------hHHHHHHhcCCCHHHHHH
Q 014817          182 LTETECMEIASDADK-----------------------------------------------ITSLSSLLFHSSIEVRVN  214 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~-----------------------------------------------i~~Lv~~L~~~~~~~~~~  214 (418)
                      .+.++.+..+.+.|+                                               ++.|+.++.+++++++..
T Consensus       128 ~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~  207 (434)
T d1q1sc_         128 GDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLAD  207 (434)
T ss_dssp             TTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred             ccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhh
Confidence            765444444433333                                               444556666677888889


Q ss_pred             HHHHHHHHHhcccch-hhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHh
Q 014817          215 SAALIEIVLAGMRSQ-ELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRL  292 (418)
Q Consensus       215 a~~~L~~L~~~s~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL  292 (418)
                      ++++|.++   +..+ +....+. ..|+++.|+.+++++  ++.++..++++|.+++.++ +.+..+++.|+++.|+.+|
T Consensus       208 a~~~l~~l---~~~~~~~~~~~~-~~~~~~~Lv~ll~~~--~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~~l~~ll  281 (434)
T d1q1sc_         208 SCWAISYL---TDGPNERIEMVV-KKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLL  281 (434)
T ss_dssp             HHHHHHHH---TSSCHHHHHHHH-TTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHT
T ss_pred             HHhhhccc---chhhhhhHHHHh-hcccchhcccccccc--hhhhhhchhhhhhhHHhhhhHHHHHHHhccccchHHHhh
Confidence            99999999   5444 4444443 478999999999998  8999999999999999765 4677888999999999999


Q ss_pred             cCCCcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHH
Q 014817          293 ADFDKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLT  370 (418)
Q Consensus       293 ~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~  370 (418)
                      .+.+.+++..++++|.+|+.+ .+.+..+.+. |+++.+++++.+.+..++..|+++|.+++. ++.+....+.+.|+++
T Consensus       282 ~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~-~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~  360 (434)
T d1q1sc_         282 TNPKTNIQKEATWTMSNITAGRQDQIQQVVNH-GLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIE  360 (434)
T ss_dssp             TCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHT-TCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHH
T ss_pred             cccchhhhHHHHHHHhhhccccchhHHHHhhh-hhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHH
Confidence            999999999999999999964 5566667774 999999999999999999999999999987 6777888899999999


Q ss_pred             HHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          371 QLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       371 ~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      .|+.++++. +++.+..+.++|.++....+
T Consensus       361 ~L~~ll~~~-d~~~~~~~l~~l~~ll~~~~  389 (434)
T d1q1sc_         361 PLMNLLSAK-DTKIIQVILDAISNIFQAAE  389 (434)
T ss_dssp             HHHHHTTSS-CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHHHHHH
Confidence            999999877 89999999999998877543

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=2e-23  Score=207.79  Aligned_cols=282  Identities=18%  Similarity=0.183  Sum_probs=244.1

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhh-cChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLAR-DSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF  180 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~-~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l  180 (418)
                      ..++.++..+.+.+  ...+..|+..++++.+ +.....+.+++.|++|.|+.+|..+.      +.+++..|+++|.++
T Consensus        76 ~~l~~~~~~~~s~~--~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~------~~~iq~~a~~~L~ni  147 (503)
T d1wa5b_          76 QELPQMTQQLNSDD--MQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQ------PEMLQLEAAWALTNI  147 (503)
T ss_dssp             CCHHHHHHHHSCSS--HHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTS------CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCC--HHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCC------CHHHHHHHHHHHHHH
Confidence            34788888887764  3446889999998764 34445567899999999999998664      678999999999999


Q ss_pred             CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817          181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK  260 (418)
Q Consensus       181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  260 (418)
                      +.+.+.....+.+.|+++.++.+|.+++.+++..++++|.|++  ..+++++..+.. .|++++|+.++.+.  +..++.
T Consensus       148 ~~~~~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia--~~~~~~r~~l~~-~~~~~~L~~ll~~~--~~~~~~  222 (503)
T d1wa5b_         148 ASGTSAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVA--GDSTDYRDYVLQ-CNAMEPILGLFNSN--KPSLIR  222 (503)
T ss_dssp             TTSCHHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTCHHHHHHGGGSC--CHHHHH
T ss_pred             HcCCHHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHh--hhhHHHHHHHHh-hcccccchhhcccC--CHHHHH
Confidence            9877677888889999999999999999999999999999995  556788888865 78999999999988  789999


Q ss_pred             HHHHHHHHHcccccc-HHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC-HhHHHHHHhccCChHHHHHHHhcCC
Q 014817          261 VGIKALFALCLVKQT-RYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI-PAGCAEFAEHALTVPLLVKTILKIS  338 (418)
Q Consensus       261 ~a~~aL~~L~~~~~n-~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~~l~~~~  338 (418)
                      .++++|.+|+.+... .......|+++.|+.++.+.+.+++..++++|.+|+.. ++....+.+ .|+++.++.++.+++
T Consensus       223 ~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~l~~~~~~~~~~~~~-~~~~~~l~~ll~~~~  301 (503)
T d1wa5b_         223 TATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVID-VRIPKRLVELLSHES  301 (503)
T ss_dssp             HHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHHHHHHHH-TTCHHHHHHGGGCSC
T ss_pred             HHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHhhccCCchhhhhhhh-hhhhhhhhhcccCCc
Confidence            999999999987643 33445678999999999999999999999999999964 456667777 599999999999999


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      ..++..|+.+|.+++.++......+.+.|+++.|..+++++ ++.+++.+.++|.++...
T Consensus       302 ~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~~  360 (503)
T d1wa5b_         302 TLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITAG  360 (503)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTS
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhhc
Confidence            99999999999999998888888899999999999999777 999999999999999764

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.9e-24  Score=214.32  Aligned_cols=278  Identities=15%  Similarity=0.112  Sum_probs=235.2

Q ss_pred             hHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHh-hcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817          101 PSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLIS-SHNVRAILSQVFFTNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       101 ~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      ...|+.|++.|++.+  ...+..|+..+..+++.+ ..+..++ ..|+++.|+++|....      +.++++.|+.+|.+
T Consensus        16 ~~aip~L~~lL~~~~--~~v~~~A~~~l~~l~~~~-~~~~~~~~~~~~v~~l~~~L~~~~------~~~~~~~a~~~L~~   86 (529)
T d1jdha_          16 TRAIPELTKLLNDED--QVVVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQNTN------DVETARCTAGTLHN   86 (529)
T ss_dssp             -CHHHHHHHHHTCSC--HHHHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcc-HHHHHHHHhhhHHHHHHHHHcCCC------CHHHHHHHHHHHHH
Confidence            356899999998764  345789999999998764 4454454 4578999999998764      57899999999999


Q ss_pred             CCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817          180 FPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       180 l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      |+.+. +++..+++.|+++.|+++|++++++++..|+++|.+++  ..++..+..+.. .|+|+.|+.+|+++  ++.++
T Consensus        87 l~~~~-~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~--~~~~~~~~~~~~-~g~i~~Lv~lL~~~--~~~~~  160 (529)
T d1jdha_          87 LSHHR-EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLL--LHQEGAKMAVRL-AGGLQKMVALLNKT--NVKFL  160 (529)
T ss_dssp             HTTSH-HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH--HHCTTHHHHHHH-HTHHHHHHHGGGCC--CHHHH
T ss_pred             HhCCc-hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhh--cccchhhhHHHh-cCCchHHHHHHHcc--ChHHH
Confidence            99777 88999999999999999999999999999999999994  344555556644 89999999999988  89999


Q ss_pred             HHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCC-CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcC
Q 014817          260 KVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADF-DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKI  337 (418)
Q Consensus       260 ~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~  337 (418)
                      ..++++|.+|+..+ +++..+.+.|+++.|+.++.+. +..++..++.++.+++.+++++..+++. |+++.|+.++...
T Consensus       161 ~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~~ls~~~~~~~~~~~~-g~~~~L~~ll~~~  239 (529)
T d1jdha_         161 AITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLTDP  239 (529)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHT-THHHHHHTTTTSS
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHhhhhccccccchhhhh-hhhhhHHHHhccc
Confidence            99999999999764 5777788999999999999754 4568889999999999999999999995 9999999999999


Q ss_pred             ChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          338 SDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       338 ~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +..++..++++|.+++.....   .....|+++.|+.++.++ +...+..|.++|.+|+..
T Consensus       240 ~~~~~~~a~~~l~~ls~~~~~---~~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~~~  296 (529)
T d1jdha_         240 SQRLVQNCLWTLRNLSDAATK---QEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTCN  296 (529)
T ss_dssp             CHHHHHHHHHHHHHHHTTCTT---CSCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTT
T ss_pred             chhhhhhhhhHHHhccccccc---hhhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhccc
Confidence            999999999999999873321   122357899999999777 999999999999999753

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=1.5e-23  Score=153.53  Aligned_cols=75  Identities=52%  Similarity=0.933  Sum_probs=70.6

Q ss_pred             CCCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817           11 SVQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR   85 (418)
Q Consensus        11 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~   85 (418)
                      .+++|++|.||||+++|+|||+++|||+|||.||++|+..+...||.|+.++...++.||+.|+++|+.|+++|+
T Consensus         2 ~peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~~   76 (78)
T d1t1ha_           2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESNG   76 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHSC
T ss_pred             CCCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHhC
Confidence            357999999999999999999999999999999999998777889999999999999999999999999999874

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=4e-23  Score=151.91  Aligned_cols=74  Identities=39%  Similarity=0.543  Sum_probs=70.1

Q ss_pred             CCCCCcccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817           12 VQIPYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR   85 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~   85 (418)
                      .++|++|.||||+++|+|||+++|||+|||.||++|+..+..+||.|++++...++.||..|+++|++|.++|+
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~   75 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG   75 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred             CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCC
Confidence            47899999999999999999999999999999999998777889999999998899999999999999998875

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=2.2e-19  Score=163.46  Aligned_cols=192  Identities=16%  Similarity=0.087  Sum_probs=166.1

Q ss_pred             hhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHH-HhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCc
Q 014817          118 YGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQ-VFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADK  196 (418)
Q Consensus       118 ~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~  196 (418)
                      .+.+..|+..|..++. +.+++..+...|+++.|+. +|.++       +++++..|+.+|++++.+++..+..+.+.|+
T Consensus        31 ~~~~~~Al~~L~~L~~-~~d~a~~l~~~gg~~~ll~~ll~s~-------~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~  102 (264)
T d1xqra1          31 QQEREGALELLADLCE-NMDNAADFCQLSGMHLLVGRYLEAG-------AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGA  102 (264)
T ss_dssp             HHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHTTTTCS-------SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTH
T ss_pred             HHHHHHHHHHHHHHHc-CHHHHHHHHHcCCHHHHHHHHhCCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            3456789999999994 5778888999999999986 55555       6899999999999999887688999999999


Q ss_pred             hHHHHHHhcC-CCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc-cc
Q 014817          197 ITSLSSLLFH-SSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV-KQ  274 (418)
Q Consensus       197 i~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~-~~  274 (418)
                      ++.|+.+|.+ .+++++..++++|.+++  ..++.++..+.. .|+++.|+++++++  ++.++..++++|.+|+.. .+
T Consensus       103 i~~Lv~lL~~~~~~~v~~~a~~aL~~l~--~~~~~~~~~~~~-~~gi~~L~~lL~~~--~~~~~~~a~~~L~~l~~~~~~  177 (264)
T d1xqra1         103 LRKLLRLLDRDACDTVRVKALFAISCLV--REQEAGLLQFLR-LDGFSVLMRAMQQQ--VQKLKVKSAFLLQNLLVGHPE  177 (264)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTHHHHHHHHHHSS--CHHHHHHHHHHHHHHHHHCGG
T ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHHh--ccchhhHHHHHH-hhhhhHHHHHHhcC--chHHHHHHHHHHHHHHhccHH
Confidence            9999999965 57899999999999995  566667777755 78999999999998  899999999999999865 67


Q ss_pred             cHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhc-CHhHHHHHHh
Q 014817          275 TRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCR-IPAGCAEFAE  322 (418)
Q Consensus       275 n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~  322 (418)
                      ++..+++.|+++.|+.+|.+++..+++.++++|.+|+. +++.+..+..
T Consensus       178 ~~~~~~~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         178 HKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             GHHHHHHTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHHHHhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            89999999999999999999999999999999999996 4556555554

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=2.4e-19  Score=163.22  Aligned_cols=195  Identities=13%  Similarity=0.051  Sum_probs=170.6

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHH-HhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHH
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSS-LLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEG  244 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~-~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~  244 (418)
                      +.+.+..|+.+|.+|+.+. +++..+...|+++.|+. +|+++++++|..|+++|.+++  ..++..+..+.. .|+++.
T Consensus        30 ~~~~~~~Al~~L~~L~~~~-d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~--~~~~~~~~~~~~-~~~i~~  105 (264)
T d1xqra1          30 DQQEREGALELLADLCENM-DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCS--QNVAAIQEQVLG-LGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHTSH-HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHH--TTCHHHHHHHHH-TTHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCH-HHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHH-cCchHH
Confidence            4677899999999999666 78888999999999886 778899999999999999994  345666767755 789999


Q ss_pred             HHHHhhcCCCChhhhHHHHHHHHHHcccc-ccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHHHh
Q 014817          245 VIDILKNLSSYPRGLKVGIKALFALCLVK-QTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEFAE  322 (418)
Q Consensus       245 Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~  322 (418)
                      |+.++.+.. ++.++..++++|.+|+.+. .++..+.+.|+++.|+++|.+++..++..++.+|.+|+ .+++.+..+..
T Consensus       106 Lv~lL~~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  184 (264)
T d1xqra1         106 LLRLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCS  184 (264)
T ss_dssp             HHHHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHHhhcCC-CHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            999998654 7889999999999999765 57788899999999999999999999999999999988 46778888888


Q ss_pred             ccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhc
Q 014817          323 HALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSA  366 (418)
Q Consensus       323 ~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~  366 (418)
                       .|+++.|++++.++++.+++.|+++|.+|+..+++....+...
T Consensus       185 -~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~~  227 (264)
T d1xqra1         185 -MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREP  227 (264)
T ss_dssp             -TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCG
T ss_pred             -hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence             4999999999999999999999999999999888887777654

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=7.3e-21  Score=144.58  Aligned_cols=76  Identities=34%  Similarity=0.518  Sum_probs=69.0

Q ss_pred             cCCCCCCCcccCcCccccccCCeecCCC-CcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHhcc
Q 014817            9 DLSVQIPYHFRCPISLELMCDPVTVCTG-QTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVANR   85 (418)
Q Consensus         9 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g-~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~~~   85 (418)
                      ....++|++|.||||+++|+|||+++|| |+|||.||.+|+.. +.+||.|++++...++.||..|++.|+.|+.++.
T Consensus        14 ~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~~~   90 (98)
T d1wgma_          14 ETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAERK   90 (98)
T ss_dssp             CCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHST
T ss_pred             hhhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHHHH
Confidence            3345899999999999999999999865 69999999999976 6789999999999999999999999999999864

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=1.7e-18  Score=166.64  Aligned_cols=241  Identities=16%  Similarity=0.109  Sum_probs=193.2

Q ss_pred             ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817          146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG  225 (418)
Q Consensus       146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~  225 (418)
                      +.||.|+++|.++       +++++..|+.+|.+|+.+++++|..+.+.|+|+.|+++|++++++++..|+++|.+|+  
T Consensus         2 ~~ip~lv~~L~~~-------~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~--   72 (457)
T d1xm9a1           2 LTIPKAVQYLSSQ-------DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLV--   72 (457)
T ss_dssp             CCHHHHHHHHHSS-------CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHH--
T ss_pred             CCHHHHHHHhCCC-------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHH--
Confidence            4689999999988       6899999999999999877789999999999999999999999999999999999995  


Q ss_pred             ccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhc------------
Q 014817          226 MRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLA------------  293 (418)
Q Consensus       226 s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~------------  293 (418)
                      ..+++++..+.. .|+++.|+.++.+.. ++.++..|+++|++|+....++......|. +.++..+.            
T Consensus        73 ~~~~~~~~~i~~-~g~v~~li~~l~~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~  149 (457)
T d1xm9a1          73 FRSTTNKLETRR-QNGIREAVSLLRRTG-NAEIQKQLTGLLWNLSSTDELKEELIADAL-PVLADRVIIPFSGWCDGNSN  149 (457)
T ss_dssp             SSCHHHHHHHHH-TTCHHHHHHHHTTCC-CHHHHHHHHHHHHHHHTSSSTHHHHHHHHH-HHHHHHTTHHHHTCC-----
T ss_pred             cCCHHHHHHHHH-CCChHHHHHHHhccC-cHHHHHHHHHHHHHHHhhhhhHHHHHhccc-HHHHHHHHhhhhhhhcchhh
Confidence            467888888876 789999999998764 788999999999999999888877776554 44444331            


Q ss_pred             ----CCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc---------------------------------
Q 014817          294 ----DFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK---------------------------------  336 (418)
Q Consensus       294 ----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~---------------------------------  336 (418)
                          ..+..++..++.+|..++.+++++.......|+++.++.++.+                                 
T Consensus       150 ~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  229 (457)
T d1xm9a1         150 MSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTR  229 (457)
T ss_dssp             ----CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCH
T ss_pred             hhcccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence                2355678889999999998888888776655666666655421                                 


Q ss_pred             ------------------------------------------------------------------CChHHHHHHHHHHH
Q 014817          337 ------------------------------------------------------------------ISDRATEYAAGALA  350 (418)
Q Consensus       337 ------------------------------------------------------------------~~~~~~~~A~~~L~  350 (418)
                                                                                        .++..++.+.+++.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~  309 (457)
T d1xm9a1         230 YRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQ  309 (457)
T ss_dssp             HHHHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHH
Confidence                                                                              23344556666677


Q ss_pred             HHhcCCH-----HHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          351 ALCSASE-----RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       351 ~l~~~~~-----~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      +++....     ..+..+.+.|+++.|+.+++++ ++.++..|+.+|.+|+...
T Consensus       310 ~l~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~~~  362 (457)
T d1xm9a1         310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSRHP  362 (457)
T ss_dssp             HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHTSG
T ss_pred             HHhhccccchHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhhCh
Confidence            7665221     1344556789999999999877 9999999999999998653

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.61  E-value=1.1e-16  Score=117.29  Aligned_cols=65  Identities=25%  Similarity=0.440  Sum_probs=53.8

Q ss_pred             CCCCCc----ccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCc-ccHHHHHH
Q 014817           12 VQIPYH----FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLI-PNHTLRRL   76 (418)
Q Consensus        12 ~~~~~~----~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~-~n~~L~~~   76 (418)
                      .++|++    +.||||.++|+|||+++|||+||+.||++|++.+..+||.|+.++...++. |...+.+.
T Consensus        14 ~d~~~d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~   83 (86)
T d1rmda2          14 VDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNI   83 (86)
T ss_dssp             SCCCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHH
T ss_pred             ccchhhhccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHH
Confidence            355554    599999999999999999999999999999987677899999999866653 55555544

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=5.8e-16  Score=118.94  Aligned_cols=68  Identities=19%  Similarity=0.424  Sum_probs=58.8

Q ss_pred             CCcccCcCccccccCCeecCCCCcccHHHHHHHHHcC--CCCCCCCCCCCCCCCCcccHHHHHHHHHHHH
Q 014817           15 PYHFRCPISLELMCDPVTVCTGQTYDRPSIESWVATG--NTTCPVTRSPLTDFTLIPNHTLRRLIQDWCV   82 (418)
Q Consensus        15 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~--~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~   82 (418)
                      .+.+.||||.++|.+||+++|||+||+.||.+|+...  ...||.|+.++...++.+|..+.++++++.+
T Consensus        19 ~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~~   88 (103)
T d1jm7a_          19 QKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELLK   88 (103)
T ss_dssp             HHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHHH
T ss_pred             ccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence            4568999999999999999999999999999999753  3579999999988889999877777777643

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.55  E-value=4.2e-16  Score=105.07  Aligned_cols=52  Identities=21%  Similarity=0.371  Sum_probs=46.4

Q ss_pred             ccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCccc
Q 014817           18 FRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPN   70 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n   70 (418)
                      +.||||+++|+|||++ .|||+||+.||.+|+.+ +.+||.|++++...++++.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence            4799999999999988 59999999999999986 5689999999988877653

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.4e-15  Score=115.36  Aligned_cols=68  Identities=21%  Similarity=0.331  Sum_probs=60.1

Q ss_pred             CCCCcccCcCccccccCCeec-CCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCCcccHHHHHHHHHHHHh
Q 014817           13 QIPYHFRCPISLELMCDPVTV-CTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTLIPNHTLRRLIQDWCVA   83 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l~~n~~L~~~i~~~~~~   83 (418)
                      .+++.+.||||.++|.|||++ +|||+||+.||.+|+.   ..||.|+.++...++.+|..++++++.+...
T Consensus        18 ~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~l~~n~~l~~lv~~~~~~   86 (97)
T d1jm7b_          18 RLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSKL   86 (97)
T ss_dssp             HHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHHH
T ss_pred             hhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHh---ccccccCCcCchhhCcccHHHHHHHHHHHHH
Confidence            456678999999999999986 7999999999999985   3499999999889999999999999887654

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.1e-13  Score=98.56  Aligned_cols=49  Identities=20%  Similarity=0.298  Sum_probs=44.5

Q ss_pred             ccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014817           18 FRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT   66 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~   66 (418)
                      ..||||.+.+++|++++|||+||+.||.+|+..+..+||.|+..+....
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            4699999999999999999999999999999876788999999987544

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=3.1e-12  Score=88.59  Aligned_cols=52  Identities=17%  Similarity=0.313  Sum_probs=42.9

Q ss_pred             CcccCcCccccccCC-----eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCCC
Q 014817           16 YHFRCPISLELMCDP-----VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFTL   67 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dP-----v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~l   67 (418)
                      ++..||||++.+..+     ++++|||+||+.||.+|+..+...||.|++++...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            467899999875432     5668999999999999998777789999999876654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=9.6e-13  Score=87.77  Aligned_cols=46  Identities=17%  Similarity=0.211  Sum_probs=40.3

Q ss_pred             cccCcCccccccCCeecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCCCC
Q 014817           17 HFRCPISLELMCDPVTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTDFT   66 (418)
Q Consensus        17 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~~~   66 (418)
                      .+.||||++.|+||++++|||+||+.||++|    ..+||.|+++++...
T Consensus         6 ~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGA   51 (56)
T ss_dssp             CSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCS
T ss_pred             CCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCC
Confidence            4689999999999999999999999999765    567999999986543

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.09  E-value=2.3e-11  Score=85.05  Aligned_cols=43  Identities=28%  Similarity=0.576  Sum_probs=39.0

Q ss_pred             CcCccccccCCee-cCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           20 CPISLELMCDPVT-VCTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        20 Cpi~~~~~~dPv~-~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      ||||.+.|.+|++ ++|||+||..||.+|++. +.+||.|+.++.
T Consensus         8 C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~   51 (68)
T d1chca_           8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence            9999999999866 699999999999999986 678999998764

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=1.1e-10  Score=76.57  Aligned_cols=46  Identities=22%  Similarity=0.383  Sum_probs=38.7

Q ss_pred             cCcCccccccCC----eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCCC
Q 014817           19 RCPISLELMCDP----VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLTD   64 (418)
Q Consensus        19 ~Cpi~~~~~~dP----v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~~   64 (418)
                      -||||.+.|.+.    .+++|||+|++.||.+|++.++..||.|++++..
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            499999988543    3458999999999999998767789999998864

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=98.93  E-value=2.3e-10  Score=75.79  Aligned_cols=48  Identities=19%  Similarity=0.527  Sum_probs=39.7

Q ss_pred             CCCcccCcCccccccCC---eec-CCCCcccHHHHHHHHHcCCCCCCCCCCCC
Q 014817           14 IPYHFRCPISLELMCDP---VTV-CTGQTYDRPSIESWVATGNTTCPVTRSPL   62 (418)
Q Consensus        14 ~~~~~~Cpi~~~~~~dP---v~~-~~g~~~~r~~i~~~~~~~~~~cp~~~~~l   62 (418)
                      +.++..||||++.|.+.   +.+ +|||.|+..||.+|++. +.+||.|+.++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence            34566799999999864   344 69999999999999986 67899999765

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.68  E-value=6.8e-09  Score=80.31  Aligned_cols=51  Identities=12%  Similarity=0.243  Sum_probs=40.8

Q ss_pred             CCCCcccCcCccccccCC------------------eecCCCCcccHHHHHHHHHc----CCCCCCCCCCCCC
Q 014817           13 QIPYHFRCPISLELMCDP------------------VTVCTGQTYDRPSIESWVAT----GNTTCPVTRSPLT   63 (418)
Q Consensus        13 ~~~~~~~Cpi~~~~~~dP------------------v~~~~g~~~~r~~i~~~~~~----~~~~cp~~~~~l~   63 (418)
                      ..+.+..|+||++.|.++                  .+++|||.|+..||.+|+..    ++.+||.|+..+.
T Consensus        21 ~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~   93 (114)
T d1v87a_          21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYG   93 (114)
T ss_dssp             SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSS
T ss_pred             cccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhc
Confidence            344566899999998765                  35689999999999999974    2457999998764

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.2e-06  Score=86.67  Aligned_cols=254  Identities=11%  Similarity=0.052  Sum_probs=163.8

Q ss_pred             hhhHHHHHHHHHhhhcC-hhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCch
Q 014817          119 GSRLSALRRLRGLARDS-DKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKI  197 (418)
Q Consensus       119 ~~~~~Al~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i  197 (418)
                      +.+..|+..+..++..- ...+....-..+++.+...+.+.       +..++..+...+..++..-   ...-.....+
T Consensus       296 ~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~-------~~~vr~~~~~~l~~~~~~~---~~~~~~~~l~  365 (588)
T d1b3ua_         296 EVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDA-------NQHVKSALASVIMGLSPIL---GKDNTIEHLL  365 (588)
T ss_dssp             HHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCS-------CHHHHHHHHTTGGGGHHHH---CHHHHHHHTH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCC-------ChHHHHHHHHHHhhhhhcc---chhHHHHHHH
Confidence            34566777777766431 12222222245677777777665       5778888777766654211   1111123357


Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHH
Q 014817          198 TSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRY  277 (418)
Q Consensus       198 ~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~  277 (418)
                      +.+...+++.+++++..+...+..+   ...-. ...+.  ...++.+..++++.  +..++..++.++..++..-... 
T Consensus       366 p~l~~~l~d~~~~v~~~~~~~l~~~---~~~~~-~~~~~--~~ll~~l~~~~~d~--~~~~r~~~~~~l~~l~~~~~~~-  436 (588)
T d1b3ua_         366 PLFLAQLKDECPEVRLNIISNLDCV---NEVIG-IRQLS--QSLLPAIVELAEDA--KWRVRLAIIEYMPLLAGQLGVE-  436 (588)
T ss_dssp             HHHHHHHTCSCHHHHHHHHTTCHHH---HHHSC-HHHHH--HHHHHHHHHHHTCS--SHHHHHHHHHHHHHHHHHHCGG-
T ss_pred             HHHHHHHHhhhhhhhhHHHHHHHHH---Hhhcc-hhhhh--hHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHcChH-
Confidence            8888999999999999988888877   32211 12221  35788888888887  8899999999999887432100 


Q ss_pred             HHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCH
Q 014817          278 KAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASE  357 (418)
Q Consensus       278 ~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~  357 (418)
                       .......+.+..++.+....++..|+.+|..|+..- +.+....  ..++.+...+.+.+...+..++.++..+...  
T Consensus       437 -~~~~~l~~~l~~~l~D~~~~VR~~A~~~L~~l~~~~-~~~~~~~--~i~~~l~~~~~~~~~~~R~~~~~~l~~l~~~--  510 (588)
T d1b3ua_         437 -FFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKF-GKEWAHA--TIIPKVLAMSGDPNYLHRMTTLFCINVLSEV--  510 (588)
T ss_dssp             -GCCHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHH-CHHHHHH--HTHHHHHHTTTCSCHHHHHHHHHHHHHHHHH--
T ss_pred             -hHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHh-CcHHHHH--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH--
Confidence             011224556677777777788888999998887421 2222222  4667777777778888888888888877651  


Q ss_pred             HHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          358 RCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       358 ~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                       .........+++.|+.++... .+.+|..|+++|..+....
T Consensus       511 -~~~~~~~~~ilp~ll~~~~D~-v~nVR~~a~~~l~~i~~~~  550 (588)
T d1b3ua_         511 -CGQDITTKHMLPTVLRMAGDP-VANVRFNVAKSLQKIGPIL  550 (588)
T ss_dssp             -HHHHHHHHHTHHHHHHGGGCS-CHHHHHHHHHHHHHHGGGS
T ss_pred             -cChHHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHc
Confidence             112233345788888877555 7889999999888886653

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.52  E-value=6.8e-06  Score=80.98  Aligned_cols=264  Identities=14%  Similarity=0.135  Sum_probs=139.0

Q ss_pred             HHHHHHHHhhcCCCchhhhHHHHHHHHHhhhc--ChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcC
Q 014817          103 LVRTLLNQASSESNTYGSRLSALRRLRGLARD--SDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMF  180 (418)
Q Consensus       103 ~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~--~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l  180 (418)
                      -+..|++.|++.  +...|..|++.|..++..  .+..+     ...+|.|.+++.+.        .+++..++..|.++
T Consensus        11 ~i~~l~~~l~~~--~~~~R~~a~~~l~~ia~~lg~~~~~-----~~lip~l~~~~~~~--------~ev~~~~~~~l~~~   75 (588)
T d1b3ua_          11 PIAVLIDELRNE--DVQLRLNSIKKLSTIALALGVERTR-----SELLPFLTDTIYDE--------DEVLLALAEQLGTF   75 (588)
T ss_dssp             HHHHHHHHTTCS--CHHHHHHHHHTHHHHHHHSCHHHHH-----HTHHHHHHHTCCCC--------HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhCcHhhH-----HHHHHHHHHHhcCc--------HHHHHHHHHHHHHH
Confidence            367788888876  444578899999887653  23333     23578888877544        46777777777776


Q ss_pred             CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc-----------------------
Q 014817          181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN-----------------------  237 (418)
Q Consensus       181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~-----------------------  237 (418)
                      .... ...+  .....++.+..++...+..+|..|+.+|..+.   ..-.. ..+..                       
T Consensus        76 ~~~~-~~~~--~~~~ll~~l~~l~~~~~~~Vr~~a~~~l~~i~---~~~~~-~~~~~~l~p~i~~L~~~~~~~~r~~a~~  148 (588)
T d1b3ua_          76 TTLV-GGPE--YVHCLLPPLESLATVEETVVRDKAVESLRAIS---HEHSP-SDLEAHFVPLVKRLAGGDWFTSRTSACG  148 (588)
T ss_dssp             SGGG-TSGG--GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHH---TTSCH-HHHHHTHHHHHHHHHTCSSHHHHHHHGG
T ss_pred             HHHc-CChh--HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHH---HhCCH-HHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence            5311 0000  11234667777777888889999998888883   22111 11100                       


Q ss_pred             -------------hhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817          238 -------------LDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERAL  304 (418)
Q Consensus       238 -------------~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~  304 (418)
                                   ....++.+..++++.  ++.+++.++.++..++..-..  .......++.+..++.+.+..++..++
T Consensus       149 ll~~~~~~~~~~~~~~l~~~~~~l~~D~--~~~VR~~a~~~l~~~~~~~~~--~~~~~~l~~~l~~l~~d~~~~vr~~a~  224 (588)
T d1b3ua_         149 LFSVCYPRVSSAVKAELRQYFRNLCSDD--TPMVRRAAASKLGEFAKVLEL--DNVKSEIIPMFSNLASDEQDSVRLLAV  224 (588)
T ss_dssp             GHHHHTTTSCHHHHHHHHHHHHHHHTCS--CHHHHHHHHHHHHHHHHTSCH--HHHHHTHHHHHHHHHTCSCHHHHTTHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHhccC--CHHHHHHHHHHHHHHHHHhcH--HHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence                         001222333333333  444444444444444433221  112233444444444444444555555


Q ss_pred             HHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHH
Q 014817          305 ATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRA  384 (418)
Q Consensus       305 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~  384 (418)
                      .+|..++..-.. ... . ...++.+.+.+.+.+..++..++.+|..++..   .........+++.+..++.+. ++.+
T Consensus       225 ~~l~~i~~~~~~-~~~-~-~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~---~~~~~~~~~l~~~l~~ll~d~-~~~v  297 (588)
T d1b3ua_         225 EACVNIAQLLPQ-EDL-E-ALVMPTLRQAAEDKSWRVRYMVADKFTELQKA---VGPEITKTDLVPAFQNLMKDC-EAEV  297 (588)
T ss_dssp             HHHHHHHHHSCH-HHH-H-HHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHH---HCHHHHHHTHHHHHHHHHTCS-SHHH
T ss_pred             HHHHHhhccCCH-HHH-H-HHHHHHHHHhcccccHHHHHHHHHhHHHHHHH---hhhhhhhhhhhHHHHHHHhcc-chHH
Confidence            555444421111 111 1 12445555555555666666666666666541   111122334666666666555 7777


Q ss_pred             HHHHHHHHHHHHhhC
Q 014817          385 KRKAQLLLKLLRDSW  399 (418)
Q Consensus       385 ~~~A~~~L~~l~~~~  399 (418)
                      |..|...+..+...-
T Consensus       298 r~~a~~~l~~~~~~l  312 (588)
T d1b3ua_         298 RAAASHKVKEFCENL  312 (588)
T ss_dssp             HHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHH
Confidence            777777777666653

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.52  E-value=1.5e-05  Score=69.95  Aligned_cols=231  Identities=13%  Similarity=0.013  Sum_probs=144.6

Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817          104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT  183 (418)
Q Consensus       104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~  183 (418)
                      ...|++.|.++++  ..|..|+..|..+..           ..+++.|++++.+.       ++.++..|+.+|..+...
T Consensus        21 ~~~L~~~L~d~~~--~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~-------~~~vr~~a~~aL~~l~~~   80 (276)
T d1oyza_          21 DDELFRLLDDHNS--LKRISSARVLQLRGG-----------QDAVRLAIEFCSDK-------NYIRRDIGAFILGQIKIC   80 (276)
T ss_dssp             HHHHHHHTTCSSH--HHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCS-------SHHHHHHHHHHHHHSCCC
T ss_pred             HHHHHHHhcCCCH--HHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCC-------CHHHHHHHHHHHHHhccc
Confidence            4678888886643  446888888877642           23589999999877       589999999999988654


Q ss_pred             hhHHHhhcccCCchHHHH-HHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHH
Q 014817          184 ETECMEIASDADKITSLS-SLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVG  262 (418)
Q Consensus       184 ~~~~~~~i~~~g~i~~Lv-~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a  262 (418)
                      . .....     .++.+. .++++.++.++..++.+|..+   .....    . .....++.+...+.+.  ++.++..+
T Consensus        81 ~-~~~~~-----~~~~l~~~~l~d~~~~vr~~a~~aL~~~---~~~~~----~-~~~~~~~~l~~~~~d~--~~~vr~~a  144 (276)
T d1oyza_          81 K-KCEDN-----VFNILNNMALNDKSACVRATAIESTAQR---CKKNP----I-YSPKIVEQSQITAFDK--STNVRRAT  144 (276)
T ss_dssp             T-TTHHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHH---HHHCG----G-GHHHHHHHHHHHTTCS--CHHHHHHH
T ss_pred             c-ccccc-----hHHHHHHHHhcCCChhHHHHHHHHHHHH---ccccc----h-hhHHHHHHHHHHhcCc--chHHHHHH
Confidence            3 11111     133333 345778999999999999999   33221    1 1134678888888877  78888888


Q ss_pred             HHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcC----------------HhHHHHH------
Q 014817          263 IKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRI----------------PAGCAEF------  320 (418)
Q Consensus       263 ~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~----------------~~~~~~i------  320 (418)
                      +.++..+..          ...++.++.++...+......+..++..+...                ...+...      
T Consensus       145 ~~~l~~~~~----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  214 (276)
T d1oyza_         145 AFAISVIND----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSY  214 (276)
T ss_dssp             HHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHhhcch----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccch
Confidence            887766532          23334444444433333333333322222210                0001100      


Q ss_pred             HhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHH
Q 014817          321 AEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLK  393 (418)
Q Consensus       321 ~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~  393 (418)
                      .....+++.|++.+.+  +.++..|+.+|..+..           .++++.|..++..+.+..++..|...|+
T Consensus       215 ~~~~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~-----------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         215 RKDKRVLSVLCDELKK--NTVYDDIIEAAGELGD-----------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             TTCGGGHHHHHHHHTS--SSCCHHHHHHHHHHCC-----------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             hhhhhhHHHHHHHhCC--hHHHHHHHHHHHHcCC-----------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            0113577888887754  4578888888887642           3578889888977657888888877663

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.51  E-value=3.9e-08  Score=66.31  Aligned_cols=48  Identities=19%  Similarity=0.324  Sum_probs=41.2

Q ss_pred             CcccCcCccccccCCeecCCC-----CcccHHHHHHHHH-cCCCCCCCCCCCCC
Q 014817           16 YHFRCPISLELMCDPVTVCTG-----QTYDRPSIESWVA-TGNTTCPVTRSPLT   63 (418)
Q Consensus        16 ~~~~Cpi~~~~~~dPv~~~~g-----~~~~r~~i~~~~~-~~~~~cp~~~~~l~   63 (418)
                      +...|+||.+.+.++.+.+|+     |.|.+.||++|+. .++.+||.|+.+++
T Consensus         5 d~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            345699999999999888764     9999999999996 46778999998875

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.44  E-value=6.7e-06  Score=72.39  Aligned_cols=204  Identities=11%  Similarity=0.004  Sum_probs=130.9

Q ss_pred             ChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhc
Q 014817          146 NVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAG  225 (418)
Q Consensus       146 g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~  225 (418)
                      ...+.|+++|.++       ++.++..|+.+|..+..           ..+++.|+++|++.++.+|..|+.+|..+   
T Consensus        19 ~~~~~L~~~L~d~-------~~~vR~~A~~~L~~~~~-----------~~~~~~l~~~l~d~~~~vr~~a~~aL~~l---   77 (276)
T d1oyza_          19 LNDDELFRLLDDH-------NSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQI---   77 (276)
T ss_dssp             SCHHHHHHHTTCS-------SHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHS---
T ss_pred             CCHHHHHHHhcCC-------CHHHHHHHHHHHHhhCC-----------HhHHHHHHHHHcCCCHHHHHHHHHHHHHh---
Confidence            3467788999877       68999999999987542           24589999999999999999999999998   


Q ss_pred             ccchhhhhHhhchhhhHHHHHHHh-hcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHH
Q 014817          226 MRSQELRAQISNLDEIFEGVIDIL-KNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERAL  304 (418)
Q Consensus       226 s~~~~~~~~i~~~~g~i~~Lv~lL-~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~  304 (418)
                      .......      ...++.|...+ ++.  ++.++..|+.+|.+++........    ..++.+...+.+.+..++..++
T Consensus        78 ~~~~~~~------~~~~~~l~~~~l~d~--~~~vr~~a~~aL~~~~~~~~~~~~----~~~~~l~~~~~d~~~~vr~~a~  145 (276)
T d1oyza_          78 KICKKCE------DNVFNILNNMALNDK--SACVRATAIESTAQRCKKNPIYSP----KIVEQSQITAFDKSTNVRRATA  145 (276)
T ss_dssp             CCCTTTH------HHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHHHHCGGGHH----HHHHHHHHHTTCSCHHHHHHHH
T ss_pred             ccccccc------cchHHHHHHHHhcCC--ChhHHHHHHHHHHHHccccchhhH----HHHHHHHHHhcCcchHHHHHHH
Confidence            4332221      23455555544 455  899999999999999765543222    2566777777777777766666


Q ss_pred             HHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHH----------------------
Q 014817          305 ATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRD----------------------  362 (418)
Q Consensus       305 ~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~----------------------  362 (418)
                      .++.....           ...++.+..++...+...+..+..++..+..........                      
T Consensus       146 ~~l~~~~~-----------~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~  214 (276)
T d1oyza_         146 FAISVIND-----------KATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSY  214 (276)
T ss_dssp             HHHHTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHhhcch-----------HHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccch
Confidence            65554321           244555555555555555555555554444322221110                      


Q ss_pred             HHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Q 014817          363 AVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLR  396 (418)
Q Consensus       363 ~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~  396 (418)
                      +....+++.|+..+.++   .+|..|..+|..+.
T Consensus       215 ~~~~~~~~~L~~~l~d~---~vr~~a~~aL~~ig  245 (276)
T d1oyza_         215 RKDKRVLSVLCDELKKN---TVYDDIIEAAGELG  245 (276)
T ss_dssp             TTCGGGHHHHHHHHTSS---SCCHHHHHHHHHHC
T ss_pred             hhhhhhHHHHHHHhCCh---HHHHHHHHHHHHcC
Confidence            11234677777777533   36667777776664

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=6.9e-06  Score=77.41  Aligned_cols=281  Identities=12%  Similarity=0.080  Sum_probs=171.3

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +.++.++..+.+...+...+..++..+..++.........-.....++.++..+.+.+.     +.+++..|+.++..+.
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~-----~~~v~~~a~~~l~~~~  201 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP-----SNNVKLAATNALLNSL  201 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCC-----CHHHHHHHHHHHHHHT
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhccccc-----CHHHHHHHHHHHHHHH
Confidence            45777888887765444444566777776664332222111223467777888866542     5789999999888776


Q ss_pred             CChhHHH-hhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh-hhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817          182 LTETECM-EIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE-LRAQISNLDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       182 ~~~~~~~-~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      ....... .........+.+...+.+.+++++..++.+|..++  ..... ....+ . ....+.+...+.+.  +..++
T Consensus       202 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~--~~~~~~~~~~l-~-~~~~~~~~~~~~~~--~~~~~  275 (458)
T d1ibrb_         202 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM--SLYYQYMETYM-G-PALFAITIEAMKSD--IDEVA  275 (458)
T ss_dssp             TTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH--HHCGGGCTTTT-T-TTHHHHHHHHHHCS--SHHHH
T ss_pred             HhhhhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHH--HHhHHHHHHHH-H-HHHHHHHHHHhccc--cHHHH
Confidence            5432221 11222345677778888889999999999999995  22222 22222 1 22344455556666  78888


Q ss_pred             HHHHHHHHHHccccc---------------------cHHHHHHcCchHHHHHHhcCC-------CcccHHHHHHHHHHHh
Q 014817          260 KVGIKALFALCLVKQ---------------------TRYKAVAAGAAETLVDRLADF-------DKCDAERALATVELLC  311 (418)
Q Consensus       260 ~~a~~aL~~L~~~~~---------------------n~~~i~~~G~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~  311 (418)
                      ..|+..+..++....                     ......-...++.+.+.+...       +..+...+..++..++
T Consensus       276 ~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~  355 (458)
T d1ibrb_         276 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA  355 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHH
Confidence            889988888753221                     111111223445555555421       2245666777777666


Q ss_pred             cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC-HHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHH
Q 014817          312 RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS-ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQL  390 (418)
Q Consensus       312 ~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~  390 (418)
                      ....  ..+..  ..++.+.+.+.+++...++.|+.+|..++.+. ++.... .-..+++.|+..+++. ++.+|..|++
T Consensus       356 ~~~~--~~~~~--~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~-~~~VR~~a~~  429 (458)
T d1ibrb_         356 TCCE--DDIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAW  429 (458)
T ss_dssp             HHTT--TTHHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred             Hhcc--Hhhhh--HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            3211  11121  23456666677788999999999999988632 221111 1245788888888776 9999999999


Q ss_pred             HHHHHHhhC
Q 014817          391 LLKLLRDSW  399 (418)
Q Consensus       391 ~L~~l~~~~  399 (418)
                      +|..+..+.
T Consensus       430 ~l~~i~~~~  438 (458)
T d1ibrb_         430 TVGRICELL  438 (458)
T ss_dssp             HHHHHHHHG
T ss_pred             HHHHHHHHh
Confidence            999998764

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=6.3e-08  Score=70.74  Aligned_cols=44  Identities=18%  Similarity=0.421  Sum_probs=36.7

Q ss_pred             cCcCccccccCC------------------eecCCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           19 RCPISLELMCDP------------------VTVCTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        19 ~Cpi~~~~~~dP------------------v~~~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      .|+||++.|.+|                  ++++|||.|...||.+|++. +.+||.|++++.
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            388988877763                  34589999999999999987 678999998764

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.10  E-value=9.3e-07  Score=67.37  Aligned_cols=105  Identities=11%  Similarity=0.011  Sum_probs=84.6

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHH
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGV  245 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~L  245 (418)
                      |+.|+..|+.+|..+.            ...++.|+..|.++++.+|..|+++|.++   .           ..+.++.|
T Consensus         5 ~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~---~-----------~~~~~~~L   58 (111)
T d1te4a_           5 NKWVRRDVSTALSRMG------------DEAFEPLLESLSNEDWRIRGAAAWIIGNF---Q-----------DERAVEPL   58 (111)
T ss_dssp             CCCSSSSCCSSTTSCS------------STTHHHHHHGGGCSCHHHHHHHHHHHGGG---C-----------SHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhc---c-----------hhhhHHHH
Confidence            5677777777766542            23578899999999999999999988777   2           13578999


Q ss_pred             HHHhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHH
Q 014817          246 IDILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVE  308 (418)
Q Consensus       246 v~lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~  308 (418)
                      +.+|++.  ++.++..|+++|..+..          .++++.|..++.+++..++..|+.+|.
T Consensus        59 ~~~l~d~--~~~VR~~a~~aL~~i~~----------~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          59 IKLLEDD--SGFVRSGAARSLEQIGG----------ERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHC--CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             Hhhhccc--hhHHHHHHHHHHHHhCc----------cchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            9999988  89999999999988742          346788889999888899988887764

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=9.3e-05  Score=69.43  Aligned_cols=226  Identities=12%  Similarity=0.090  Sum_probs=156.1

Q ss_pred             ChhHHHHHHHHHhcCCCChhHHHhhccc--CCchHHHHHHhcC-----------------CCHHHHHHHHHHHHHHHhcc
Q 014817          166 SPELAHESLALLVMFPLTETECMEIASD--ADKITSLSSLLFH-----------------SSIEVRVNSAALIEIVLAGM  226 (418)
Q Consensus       166 ~~~v~~~a~~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~~L~~-----------------~~~~~~~~a~~~L~~L~~~s  226 (418)
                      +.+.+..++..|..+...+ +.|..+..  ...++.|+.+|+.                 ...+.+.+++-+++-|   +
T Consensus       178 ~~~~~~i~v~~lq~llr~~-~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlL---S  253 (477)
T d1ho8a_         178 QMDTCYVCIRLLQELAVIP-EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLL---T  253 (477)
T ss_dssp             CHHHHHHHHHHHHHHHTSH-HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHH---T
T ss_pred             ccchHHHHHHHHHHHhcCc-cHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHH---H
Confidence            4566777777787777666 77888753  4567777777753                 1247788999999999   8


Q ss_pred             cchhhhhHhhch-hhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc--c----HHHHHHcCchHHHHHHhcCC---C
Q 014817          227 RSQELRAQISNL-DEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ--T----RYKAVAAGAAETLVDRLADF---D  296 (418)
Q Consensus       227 ~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~--n----~~~i~~~G~v~~Lv~lL~~~---~  296 (418)
                      .+++....+... .+.|+.|+++++... .+.+.+.++.+|.|+.....  +    ...++..++++. +..|...   |
T Consensus       254 F~~~~~~~l~~~~~~~i~~l~~i~~~s~-KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~-l~~L~~r~~~D  331 (477)
T d1ho8a_         254 FNPVFANELVQKYLSDFLDLLKLVKITI-KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPT-VQSLSERKYSD  331 (477)
T ss_dssp             TSHHHHHHHHTTSHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHH-HHHHHSSCCSS
T ss_pred             cCHHHHHHHHHhhhHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHH-HHHHhcCCCCC
Confidence            888877777542 357999999998775 78899999999999986532  2    334556666654 5556432   4


Q ss_pred             cccHHHHHHHH-------HHHhcCHhHHHHHHh------------------------c-cCChHHHHHHHhc--------
Q 014817          297 KCDAERALATV-------ELLCRIPAGCAEFAE------------------------H-ALTVPLLVKTILK--------  336 (418)
Q Consensus       297 ~~~~~~a~~~L-------~~L~~~~~~~~~i~~------------------------~-~g~i~~Lv~~l~~--------  336 (418)
                      +++.+..-.+-       ..++..++...++..                        . ...+..|+++|.+        
T Consensus       332 edl~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~  411 (477)
T d1ho8a_         332 EELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVN  411 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccc
Confidence            55443322211       223333444433311                        1 1257788888862        


Q ss_pred             --CChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          337 --ISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       337 --~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                        .++.+...|+-=|..+++.-|+-+..+.+.|+=..++.++.+. ++++|..|...++.+-.+
T Consensus       412 ~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQklm~~  474 (477)
T d1ho8a_         412 AKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAIIGY  474 (477)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHHHHH
T ss_pred             cCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHHh
Confidence              3555566777777888887788888888899999999999777 999999999999887665

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.00  E-value=0.00025  Score=71.79  Aligned_cols=273  Identities=14%  Similarity=0.064  Sum_probs=162.9

Q ss_pred             hHHHHHHHHH-hhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817          101 PSLVRTLLNQ-ASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       101 ~~~i~~lv~~-L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      .+++..++.. +.++++  ..|..|-..|..+..++.        .+.+..|.+++.+...     +..++..|+-.|.+
T Consensus         3 ~~~~~~~L~~~~~s~d~--~~r~~Ae~~L~~~~~~~~--------~~~~~~l~~il~~~~~-----~~~~r~~A~i~lkn   67 (861)
T d2bpta1           3 TAEFAQLLENSILSPDQ--NIRLTSETQLKKLSNDNF--------LQFAGLSSQVLIDENT-----KLEGRILAALTLKN   67 (861)
T ss_dssp             HHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHTCTTS-----CHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHH
Confidence            3456666654 455543  346778888887765432        2467788888876542     56788888888887


Q ss_pred             CCCChhHHH---------hhcc---cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHH
Q 014817          180 FPLTETECM---------EIAS---DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVID  247 (418)
Q Consensus       180 l~~~~~~~~---------~~i~---~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~  247 (418)
                      .........         ..+-   ....-..++..|.+.++.+|..++.++..+   ...+-..   ......++.|+.
T Consensus        68 ~i~~~~~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i---~~~~~p~---~~wpeli~~L~~  141 (861)
T d2bpta1          68 ELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAI---ADIELPH---GAWPELMKIMVD  141 (861)
T ss_dssp             TTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHH---HHHHGGG---TCCHHHHHHHHH
T ss_pred             HhhcccchhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH---HHHhCCc---CchHHHHHHHHH
Confidence            654321110         0111   112345667778888999999999999999   4332111   122468899999


Q ss_pred             HhhcCCCChhhhHHHHHHHHHHccccccHHHHHH---cCchHHHHHHhcCC--CcccHHHHHHHHHHHhcC-HhHHH-HH
Q 014817          248 ILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVA---AGAAETLVDRLADF--DKCDAERALATVELLCRI-PAGCA-EF  320 (418)
Q Consensus       248 lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~---~G~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~-~~~~~-~i  320 (418)
                      .+.+.. +...+..|+.+|..++..........-   ...+..++..+.+.  +..++..++.+|.++... ...-. ..
T Consensus       142 ~~~s~~-~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~  220 (861)
T d2bpta1         142 NTGAEQ-PENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREG  220 (861)
T ss_dssp             HTSTTS-CHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHH
T ss_pred             HhcCCC-cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhh
Confidence            988763 466778899999998754322111111   12344445544433  456778888888877743 22111 11


Q ss_pred             HhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          321 AEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       321 ~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      .. ...++.+...+...++.++..+..++..++...++........ .+..+........++.++..+..++..++.
T Consensus       221 ~~-~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~-~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         221 ER-NYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQ-ALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HH-HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHHHH-THHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             hh-hHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            11 1345667777777899999999999999887222211111111 233333333333378888888877776654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=7.8e-06  Score=87.44  Aligned_cols=278  Identities=10%  Similarity=0.049  Sum_probs=173.7

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      -++..|++.+++.++  ..|..|+..|......+...-+.=....+++.|+++|.+.       +++||..|+.+|..+.
T Consensus         3 ~~~~~ll~k~~~~D~--d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~-------~~~Vq~~A~k~l~~l~   73 (1207)
T d1u6gc_           3 YHISNLLEKMTSSDK--DFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDK-------NGEVQNLAVKCLGPLV   73 (1207)
T ss_dssp             HHHHHHHHHTTCSSH--HHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCS-------SHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHhcCCCCH--hHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHHH
Confidence            357889999988754  3578899888876543221111111234788999999766       6899999999988775


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhc--hhhhHHHHHHHhhcCCCChhhh
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISN--LDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      ....+..    -...++.|+..+.+++...+..+..+|+.+...-........+..  ....++.|...+.... +..++
T Consensus        74 ~~~~~~~----~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~v~  148 (1207)
T d1u6gc_          74 SKVKEYQ----VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQE-DVSVQ  148 (1207)
T ss_dssp             TTSCHHH----HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCS-CHHHH
T ss_pred             HhCcHhh----HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCC-CHHHH
Confidence            4321111    123567788888888888888888888877420110110011100  1224455555555543 67888


Q ss_pred             HHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc-CC
Q 014817          260 KVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK-IS  338 (418)
Q Consensus       260 ~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~-~~  338 (418)
                      ..++.+|..+......-..-.....++.|+..|.+.+..++..|+.+|..|+..-..  ...  ...+..+++.+.. .+
T Consensus       149 ~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~--~~~--~~~~~~ll~~l~~~~~  224 (1207)
T d1u6gc_         149 LEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDS  224 (1207)
T ss_dssp             HHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH--HHH--HHHHHHHHHHHccCCC
Confidence            899999988865432110001123567777778888888999999999999853211  111  1456667776654 45


Q ss_pred             hHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          339 DRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       339 ~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ...+..++.++..++...+..... .-..+++.++..++.. ++..|+.+..++..+....
T Consensus       225 ~~~~~~~~~~l~~l~~~~~~~~~~-~l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~~~  283 (1207)
T d1u6gc_         225 MSTTRTYIQCIAAISRQAGHRIGE-YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVRRC  283 (1207)
T ss_dssp             SCSCTTHHHHHHHHHHHSSGGGTT-SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHHHHcchhhHH-HHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHhC
Confidence            566777888888887622221000 0145788888888776 8889999999998887654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=0.00031  Score=72.45  Aligned_cols=264  Identities=13%  Similarity=0.063  Sum_probs=152.7

Q ss_pred             chhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhH-HHhhcccCC
Q 014817          117 TYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETE-CMEIASDAD  195 (418)
Q Consensus       117 ~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~-~~~~i~~~g  195 (418)
                      +...|..|+.++..++.+....-.... ..+++.|+..+.+.       ++.++..|+++|+.++..... ..... -..
T Consensus       408 ~~~~reaa~~alg~i~eg~~~~~~~~l-~~li~~l~~~l~d~-------~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~  478 (888)
T d1qbkb_         408 EWVVKESGILVLGAIAEGCMQGMIPYL-PELIPHLIQCLSDK-------KALVRSITCWTLSRYAHWVVSQPPDTY-LKP  478 (888)
T ss_dssp             SHHHHHHHHHHHHHHTTTSHHHHTTTH-HHHHHHHHHHTTSS-------CHHHHHHHHHHHHHTHHHHHSSCHHHH-TTT
T ss_pred             hhHHHHHHHHHhhhhhhhHHHHhcccc-hhhhHHHHHhccCC-------CHHHHHHHHHHHHHHHHHhhhhhhhhh-hhh
Confidence            445567788888887765433222122 23677788888765       689999999999987632100 11111 245


Q ss_pred             chHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccc---
Q 014817          196 KITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLV---  272 (418)
Q Consensus       196 ~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~---  272 (418)
                      .++.++..+.+.++.++..|+++|.++.. ...+.....+   ..+++.|+..+...  +...+..+..++..++..   
T Consensus       479 ~l~~ll~~l~d~~~~V~~~a~~al~~l~~-~~~~~l~p~~---~~il~~l~~~l~~~--~~~~~~~~~~al~~l~~~~~~  552 (888)
T d1qbkb_         479 LMTELLKRILDSNKRVQEAACSAFATLEE-EACTELVPYL---AYILDTLVFAFSKY--QHKNLLILYDAIGTLADSVGH  552 (888)
T ss_dssp             HHHHHHHHHSSSCHHHHHHHHHHHHHHHH-HHTTSSGGGH---HHHHHHHHHHTTTC--CHHHHHHHHHHHHHHHHHHGG
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HhhhhhhhHH---HHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHhhhc
Confidence            78889999999999999999999999942 1111111111   35788888888877  667777777777777532   


Q ss_pred             cccHHHHHHcCchHHHHHHhcC--CCcccHHHHHHHHHHHhc--C---HhHHHHHHhccCChHHHHHHH--------hc-
Q 014817          273 KQTRYKAVAAGAAETLVDRLAD--FDKCDAERALATVELLCR--I---PAGCAEFAEHALTVPLLVKTI--------LK-  336 (418)
Q Consensus       273 ~~n~~~i~~~G~v~~Lv~lL~~--~~~~~~~~a~~~L~~L~~--~---~~~~~~i~~~~g~i~~Lv~~l--------~~-  336 (418)
                      .-++....+ ..++.+++....  .+.......+.+|..++.  .   ......+...  .+..+...+        .. 
T Consensus       553 ~~~~~~~~~-~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~--~~~~l~~~l~~~~~~~~~~~  629 (888)
T d1qbkb_         553 HLNKPEYIQ-MLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQR--CVNLVQKTLAQAMLNNAQPD  629 (888)
T ss_dssp             GGCSHHHHH-HHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHH--HHHHHHHHHHHHHHHHHCTT
T ss_pred             cccchHHHH-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHH--HHHHHHHHHHHHHHHhcccc
Confidence            222333332 256666666542  223334445555554441  1   1111111111  111111111        00 


Q ss_pred             ----CChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          337 ----ISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       337 ----~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                          .+......+..++..+..+ .+.....+.....++.++..++.. ++.+|+.|..++..+..+-
T Consensus       630 ~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~~~  696 (888)
T d1qbkb_         630 QYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTKAC  696 (888)
T ss_dssp             TSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHHHC
T ss_pred             cccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhh
Confidence                2344455666666666651 122233344456777777777655 8999999999999888764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.0023  Score=64.70  Aligned_cols=281  Identities=12%  Similarity=0.076  Sum_probs=164.0

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      +-++.|++.+.+++.....+..++..|..++.+-......-.-..+++.++..+.+.+.     +.+++..|+.++.++.
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~-----~~~v~~~a~~~l~~~~  202 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEP-----SNNVKLAATNALLNSL  202 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCS-----CHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCc-----cHHHHHHHHHHHHHHH
Confidence            45788888887765444445668888888875422111111113467888888865532     5678888888876543


Q ss_pred             CChhHH-HhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchh-hhhHhhchhhhHHHHHHHhhcCCCChhhh
Q 014817          182 LTETEC-MEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQE-LRAQISNLDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       182 ~~~~~~-~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      ...... .......-.++.+...+.+.+++++..+...|..+.  ....+ ....+.  ..+.+.+...+.+.  +..+.
T Consensus       203 ~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~--~~~~~~~~~~~~--~~l~~~~~~~~~~~--~~~~~  276 (876)
T d1qgra_         203 EFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM--SLYYQYMETYMG--PALFAITIEAMKSD--IDEVA  276 (876)
T ss_dssp             GGCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH--HHSGGGCHHHHT--TTHHHHHHHHHTCS--SHHHH
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH--HHhHHHHHHHHH--HHHHHHHHHHhccc--cHHHH
Confidence            222111 001111224666777888889999999999999995  22222 222221  23455556666666  67788


Q ss_pred             HHHHHHHHHHccccc---------------------cHHHHHHcCchHHHHHHhcCC-------CcccHHHHHHHHHHHh
Q 014817          260 KVGIKALFALCLVKQ---------------------TRYKAVAAGAAETLVDRLADF-------DKCDAERALATVELLC  311 (418)
Q Consensus       260 ~~a~~aL~~L~~~~~---------------------n~~~i~~~G~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~  311 (418)
                      ..+...+..++....                     .-........++.+...+...       +..+...+..+|..++
T Consensus       277 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~  356 (876)
T d1qgra_         277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLA  356 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHH
Confidence            788777776653211                     111112223344555554321       1235566666666665


Q ss_pred             cCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHH
Q 014817          312 RIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQL  390 (418)
Q Consensus       312 ~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~  390 (418)
                      .....  .+..  ..++.+.+.+.+.+...++.++.++..+..+ ...... -.-..+++.+...+.+. ++.+|..|.+
T Consensus       357 ~~~~~--~~~~--~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~l~d~-~~~vr~~a~~  430 (876)
T d1qgra_         357 TCCED--DIVP--HVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK-PLVIQAMPTLIELMKDP-SVVVRDTAAW  430 (876)
T ss_dssp             HHHGG--GGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH-HHHHHHHHHHHHHHTCS-SHHHHHHHHH
T ss_pred             HHhhh--hhhh--hhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHhhcCC-ccHHHHHHHH
Confidence            32211  1111  1233344444557788888888888887763 333222 22345677888888766 9999999999


Q ss_pred             HHHHHHhhC
Q 014817          391 LLKLLRDSW  399 (418)
Q Consensus       391 ~L~~l~~~~  399 (418)
                      ++..+.+..
T Consensus       431 ~l~~~~~~~  439 (876)
T d1qgra_         431 TVGRICELL  439 (876)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHHHc
Confidence            999998864

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.71  E-value=7.3e-05  Score=56.31  Aligned_cols=87  Identities=15%  Similarity=0.044  Sum_probs=72.7

Q ss_pred             hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcc
Q 014817          147 VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGM  226 (418)
Q Consensus       147 ~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s  226 (418)
                      +++.|+..|.++       ++.++..|+.+|.++..           .+.++.|...|++.++.+|..++.+|..+   .
T Consensus        23 ~~~~L~~~l~d~-------~~~vR~~a~~~L~~~~~-----------~~~~~~L~~~l~d~~~~VR~~a~~aL~~i---~   81 (111)
T d1te4a_          23 AFEPLLESLSNE-------DWRIRGAAAWIIGNFQD-----------ERAVEPLIKLLEDDSGFVRSGAARSLEQI---G   81 (111)
T ss_dssp             THHHHHHGGGCS-------CHHHHHHHHHHHGGGCS-----------HHHHHHHHHHHHHCCTHHHHHHHHHHHHH---C
T ss_pred             HHHHHHHHHcCC-------CHHHHHHHHHHHHhcch-----------hhhHHHHHhhhccchhHHHHHHHHHHHHh---C
Confidence            578899999866       68999999999987642           23579999999999999999999999988   3


Q ss_pred             cchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHH
Q 014817          227 RSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALF  267 (418)
Q Consensus       227 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~  267 (418)
                      .           .+.++.|..+++++  ++.++..|+.+|.
T Consensus        82 ~-----------~~~~~~L~~ll~d~--~~~vr~~A~~aL~  109 (111)
T d1te4a_          82 G-----------ERVRAAMEKLAETG--TGFARKVAVNYLE  109 (111)
T ss_dssp             S-----------HHHHHHHHHHTTSC--CTHHHHHHHHHGG
T ss_pred             c-----------cchHHHHHHHHcCC--CHHHHHHHHHHHH
Confidence            1           35788899999988  8999999988874

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=0.0002  Score=73.96  Aligned_cols=278  Identities=9%  Similarity=-0.020  Sum_probs=155.3

Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcCh-hhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC
Q 014817          104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSD-KNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL  182 (418)
Q Consensus       104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~-~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~  182 (418)
                      ++.++..+++.+  ..-|..|++.|.+++.... ....... ...++.++..+.+.       ++.|++.|+.+|..+..
T Consensus       438 i~~l~~~l~d~~--~~Vr~~a~~~l~~~~~~~~~~~~~~~~-~~~l~~ll~~l~d~-------~~~V~~~a~~al~~l~~  507 (888)
T d1qbkb_         438 IPHLIQCLSDKK--ALVRSITCWTLSRYAHWVVSQPPDTYL-KPLMTELLKRILDS-------NKRVQEAACSAFATLEE  507 (888)
T ss_dssp             HHHHHHHTTSSC--HHHHHHHHHHHHHTHHHHHSSCHHHHT-TTHHHHHHHHHSSS-------CHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhccCCC--HHHHHHHHHHHHHHHHHhhhhhhhhhh-hhhHHHHHHHhcCC-------CHHHHHHHHHHHHHHHH
Confidence            455666665543  2346778888888764211 1111122 35677788777666       58899999999988753


Q ss_pred             ChhHHHhhcc--cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhH
Q 014817          183 TETECMEIAS--DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLK  260 (418)
Q Consensus       183 ~~~~~~~~i~--~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  260 (418)
                      .   ....+.  -...++.|+..+.......+..+..++..++......-.+..+.  ...++.+......-..+.....
T Consensus       508 ~---~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~~~~~  582 (888)
T d1qbkb_         508 E---ACTELVPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYI--QMLMPPLIQKWNMLKDEDKDLF  582 (888)
T ss_dssp             H---HTTSSGGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHH--HHHHHHHHHHHTTSCTTCTTHH
T ss_pred             H---hhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHH--HHHHHHHHHHHHhcccchHHHH
Confidence            2   122222  13456777778887777777777777777742111111111221  2356666666654321334444


Q ss_pred             HHHHHHHHHcccc-ccHHHHHHcCchHHHHHHh------------c-----CCCcccHHHHHHHHHHHhcCH-hHHHHHH
Q 014817          261 VGIKALFALCLVK-QTRYKAVAAGAAETLVDRL------------A-----DFDKCDAERALATVELLCRIP-AGCAEFA  321 (418)
Q Consensus       261 ~a~~aL~~L~~~~-~n~~~i~~~G~v~~Lv~lL------------~-----~~~~~~~~~a~~~L~~L~~~~-~~~~~i~  321 (418)
                      ....+|..++... +......+ ..++.++.++            .     ..+......++.++..+...- .....++
T Consensus       583 ~~le~l~~i~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~  661 (888)
T d1qbkb_         583 PLLECLSSVATALQSGFLPYCE-PVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLV  661 (888)
T ss_dssp             HHHHHHHHHHHHSTTTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHH
T ss_pred             HHHHHHHHHHHHhHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            5566666665321 11111110 0111111111            1     123445566777777766321 2223333


Q ss_pred             hccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          322 EHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       322 ~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      .....++.+...+...+..+++.|..++..++...+....... ..+++.|+..|..+ ...++.+|.+.+..++...
T Consensus       662 ~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~-~~~v~~~a~~~ig~ia~~~  737 (888)
T d1qbkb_         662 ARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPE-FISVCNNATWAIGEISIQM  737 (888)
T ss_dssp             HTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGG-GHHHHHHHHHHHHHHHHHT
T ss_pred             hHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcC-CHHHHHHHHHHHHHHHHHH
Confidence            3335677888888889999999999999888863222111100 12455555555555 7789999999999888764

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.70  E-value=6.9e-06  Score=60.39  Aligned_cols=44  Identities=16%  Similarity=0.268  Sum_probs=33.1

Q ss_pred             ccCcCccccccC---CeecCCCCcccHHHHHHHHHc----CC---CCCCCCCCC
Q 014817           18 FRCPISLELMCD---PVTVCTGQTYDRPSIESWVAT----GN---TTCPVTRSP   61 (418)
Q Consensus        18 ~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~----~~---~~cp~~~~~   61 (418)
                      ..||||.+.+..   |.+.+|||.||+.|+.+|++.    +.   -.||.|+.+
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            459999998743   456689999999999999852    22   249986543

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.00032  Score=65.42  Aligned_cols=271  Identities=10%  Similarity=0.014  Sum_probs=158.8

Q ss_pred             HHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCC
Q 014817          104 VRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPLT  183 (418)
Q Consensus       104 i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~  183 (418)
                      +..+++.+.+++  .+.+..|-..|..+..+++        .+.+..|..++.+...     +..++..|+-.|.+....
T Consensus         2 l~~il~~~~s~d--~~~r~~A~~~L~~~~~~~~--------~~~~~~l~~il~~~~~-----~~~~R~~A~i~lk~~l~~   66 (458)
T d1ibrb_           2 LITILEKTVSPD--RLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGN-----SQVARVAAGLQIKNSLTS   66 (458)
T ss_dssp             HHHHHHHTTCSC--HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTS-----CHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHhCcC--HHHHHHHHHHHHHHHhcCc--------hHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHhhc
Confidence            345666666664  3456778888888876432        2356778888866532     456777777777654322


Q ss_pred             -hhHHHhhc----------ccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcC
Q 014817          184 -ETECMEIA----------SDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNL  252 (418)
Q Consensus       184 -~~~~~~~i----------~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~  252 (418)
                       ....+...          ........++..+.+.+.. +..++.++..+   ...+...   ....+.++.|+..+.+.
T Consensus        67 ~~~~~~~~~~~~~~~l~~~~~~~i~~~ll~~~~~~~~~-~~~~~~~~~~i---~~~~~~~---~~~~~~~~~l~~~l~~~  139 (458)
T d1ibrb_          67 KDPDIKAQYQQRWLAIDANARREVKNYVLQTLGTETYR-PSSASQCVAGI---ACAEIPV---NQWPELIPQLVANVTNP  139 (458)
T ss_dssp             SSHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSS-SCSHHHHHHHH---HHHHGGG---TCCTTHHHHHHHHHHCT
T ss_pred             cCchhhhHHhhhhccCCHHHHHHHHHHHHhccCCCcHH-HHHHHHHHHHH---HHHhCCc---ccCcchhHHHHHHHHhh
Confidence             21111111          0123445567777666543 44455666666   2222211   12256899999999876


Q ss_pred             CCChhhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCCC--cccHHHHHHHHHHHhcCHhHH-H-HHHhccCCh
Q 014817          253 SSYPRGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADFD--KCDAERALATVELLCRIPAGC-A-EFAEHALTV  327 (418)
Q Consensus       253 ~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~~--~~~~~~a~~~L~~L~~~~~~~-~-~i~~~~g~i  327 (418)
                      ..+...+..++.++..++.... ....-.-...++.++..+.+++  ..++..++.++..+....... . .... ....
T Consensus       140 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~~~  218 (458)
T d1ibrb_         140 NSTEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIM  218 (458)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHH-HHHH
T ss_pred             cchHHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHH-HHhH
Confidence            4356778888899888864322 2111112335677888887544  457788888888887533211 1 1111 1345


Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          328 PLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       328 ~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      +.+...+...++.++..++.+|..++...+.....-........+...+.+. ++..+..|...+..+...
T Consensus       219 ~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~a~~~l~~i~~~  288 (458)
T d1ibrb_         219 QVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCDE  288 (458)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTTTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHHH
Confidence            5666666778999999999999998873333221111222333344444444 888888899888887653

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.35  E-value=0.0034  Score=58.55  Aligned_cols=228  Identities=13%  Similarity=0.069  Sum_probs=144.2

Q ss_pred             hhHHHHHHHHHhhhcChhhhhHHhh--cChHHHHHHHhhcccccc----------cCCChhHHHHHHHHHhcCCCChhHH
Q 014817          120 SRLSALRRLRGLARDSDKNRSLISS--HNVRAILSQVFFTNINVK----------TASSPELAHESLALLVMFPLTETEC  187 (418)
Q Consensus       120 ~~~~Al~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~----------~~~~~~v~~~a~~~L~~l~~~~~~~  187 (418)
                      .+.-|+..+..+.. .+..|..+..  ...++.|+++|+.....+          +..+.+.+-+++-++..|+.+. +.
T Consensus       181 ~~~i~v~~lq~llr-~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~-~~  258 (477)
T d1ho8a_         181 TCYVCIRLLQELAV-IPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNP-VF  258 (477)
T ss_dssp             HHHHHHHHHHHHHT-SHHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSH-HH
T ss_pred             hHHHHHHHHHHHhc-CccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCH-HH
Confidence            34557777777775 4677877743  457888888886532110          0113577888999999999877 56


Q ss_pred             HhhcccC--CchHHHHHHhcCC-CHHHHHHHHHHHHHHHhccc--chh-hhhHhhchhhhHHHHHHHhhcC-CCChhhhH
Q 014817          188 MEIASDA--DKITSLSSLLFHS-SIEVRVNSAALIEIVLAGMR--SQE-LRAQISNLDEIFEGVIDILKNL-SSYPRGLK  260 (418)
Q Consensus       188 ~~~i~~~--g~i~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~s~--~~~-~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~  260 (418)
                      ...+.+.  +.|+.|+.+++.. ...+.+.++.+|+|+++...  .+. ....+ ...+++ +++..|... -.|++..+
T Consensus       259 ~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~-v~~~~l-~~l~~L~~r~~~Dedl~e  336 (477)
T d1ho8a_         259 ANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLL-LLGNAL-PTVQSLSERKYSDEELRQ  336 (477)
T ss_dssp             HHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHH-HHHCHH-HHHHHHHSSCCSSHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-HHcchh-HHHHHHhcCCCCCHHHHH
Confidence            6666654  4599999999654 68888899999999952111  111 12222 223444 555555543 22454443


Q ss_pred             HHHHHHHH--------Hcccc------------------------ccHHHHHH--cCchHHHHHHhcC----------CC
Q 014817          261 VGIKALFA--------LCLVK------------------------QTRYKAVA--AGAAETLVDRLAD----------FD  296 (418)
Q Consensus       261 ~a~~aL~~--------L~~~~------------------------~n~~~i~~--~G~v~~Lv~lL~~----------~~  296 (418)
                      .. ..|..        +++.+                        +|..++-+  .-.+..|+++|.+          .|
T Consensus       337 dl-~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D  415 (477)
T d1ho8a_         337 DI-SNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQE  415 (477)
T ss_dssp             HH-HHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHH
T ss_pred             HH-HHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCC
Confidence            32 22222        22211                        12223222  2357889999862          24


Q ss_pred             cccHHHHHHHHHHHhc-CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHh
Q 014817          297 KCDAERALATVELLCR-IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALC  353 (418)
Q Consensus       297 ~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~  353 (418)
                      +.+..-|+.=|..++. +|++|..+-.- |+=..++++|.+.++.++.+|+.++..+-
T Consensus       416 ~~~lAVAc~DiGefvr~~P~gr~il~~l-g~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         416 KIIIQVALNDITHVVELLPESIDVLDKT-GGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTHHHHHHHH-SHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             cceeehhhhhHHHHHHHCcchhHHHHHc-CcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            4556667777777774 67888888775 88899999999999999999999987754

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.30  E-value=0.014  Score=58.30  Aligned_cols=279  Identities=13%  Similarity=0.109  Sum_probs=156.0

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhh--cChHHHHHHHhhcccccccCCChhHHHHHHHHHhc
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISS--HNVRAILSQVFFTNINVKTASSPELAHESLALLVM  179 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~--~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~  179 (418)
                      +-++.|++.+.+.+.. ..+..|+..|..++......-..+..  ...+..++..+.+.+.     +..++..|+.++.+
T Consensus       134 eli~~L~~~~~s~~~~-~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~-----~~~v~~~a~~~l~~  207 (861)
T d2bpta1         134 ELMKIMVDNTGAEQPE-NVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTET-----SKAVRLAALNALAD  207 (861)
T ss_dssp             HHHHHHHHHTSTTSCH-HHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCC-----CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccC-----CHHHHHHHHHHHHH
Confidence            4567777777665432 33566888888887543222111111  1233344444433321     67889999998886


Q ss_pred             CCCChhHHH-hhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhh-hhHhhchhhhHHHHH-HHhhcCCCCh
Q 014817          180 FPLTETECM-EIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQEL-RAQISNLDEIFEGVI-DILKNLSSYP  256 (418)
Q Consensus       180 l~~~~~~~~-~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~-~~~i~~~~g~i~~Lv-~lL~~~~~~~  256 (418)
                      +...-..+- ........++.+...+++++++++..+..+|..++  ....+. ...+   ...+..+. ...++.  ++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~--~~~~~~~~~~l---~~~l~~l~~~~~~~~--~~  280 (861)
T d2bpta1         208 SLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIM--SKYYTFMKPYM---EQALYALTIATMKSP--ND  280 (861)
T ss_dssp             HGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH--HHHGGGCHHHH---HHTHHHHHHHHTTCS--SH
T ss_pred             HHHHHhHhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHH--HHHHHHHHHHH---HHHHHHHHHHHhcCc--cH
Confidence            654321211 11112335677888889999999999999999995  222221 1111   12333333 333444  78


Q ss_pred             hhhHHHHHHHHHHccccccH-----------------HHHHHcCchHHHHHHhcCC-------CcccHHHHHHHHHHHhc
Q 014817          257 RGLKVGIKALFALCLVKQTR-----------------YKAVAAGAAETLVDRLADF-------DKCDAERALATVELLCR  312 (418)
Q Consensus       257 ~~~~~a~~aL~~L~~~~~n~-----------------~~i~~~G~v~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~  312 (418)
                      .++..+...+..++......                 ..-.-...++.+...+...       +......+..+|..++.
T Consensus       281 ~v~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~  360 (861)
T d2bpta1         281 KVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQ  360 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHh
Confidence            88888888888776432111                 0111122455566666432       11234445555555543


Q ss_pred             CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCC-HHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHH
Q 014817          313 IPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSAS-ERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLL  391 (418)
Q Consensus       313 ~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~  391 (418)
                      ....  .+..  -..+.+...+.+.+...++.|+.++..++.+. +...... -..+++.++..+... ++.+|..|.++
T Consensus       361 ~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~-l~~~l~~l~~~l~d~-~~~vr~~a~~~  434 (861)
T d2bpta1         361 NCGN--HILE--PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY-VHQALPSILNLMNDQ-SLQVKETTAWC  434 (861)
T ss_dssp             HHGG--GGHH--HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred             hcch--hhhh--hhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHHHhcCc-chhhhhHHHHH
Confidence            2111  1111  11223333344578888899999998888733 3322222 234677777777666 89999999999


Q ss_pred             HHHHHhhC
Q 014817          392 LKLLRDSW  399 (418)
Q Consensus       392 L~~l~~~~  399 (418)
                      +..+....
T Consensus       435 l~~l~~~~  442 (861)
T d2bpta1         435 IGRIADSV  442 (861)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHh
Confidence            99888764

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.0038  Score=63.05  Aligned_cols=269  Identities=10%  Similarity=0.009  Sum_probs=158.5

Q ss_pred             HHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCC-C
Q 014817          105 RTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFPL-T  183 (418)
Q Consensus       105 ~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~-~  183 (418)
                      ..+++...++  |...+..|-..|..+..++.        .|.+..|.+++.+...     +.+++..|+-.|.|... .
T Consensus         4 ~~~L~~~~s~--d~~~r~~Ae~~L~~~~~~~~--------~~f~~~L~~i~~~~~~-----~~~iR~~A~i~lKn~i~~~   68 (876)
T d1qgra_           4 ITILEKTVSP--DRLELEAAQKFLERAAVENL--------PTFLVELSRVLANPGN-----SQVARVAAGLQIKNSLTSK   68 (876)
T ss_dssp             HHHHHGGGCS--CHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHCTTS-----CHHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHhCc--CHHHHHHHHHHHHHHHhcCh--------hHHHHHHHHHHhcCCC-----CHHHHHHHHHHHHHHhhcc
Confidence            3455555554  33446677788887765422        3467888888866532     56788888888876532 2


Q ss_pred             hhHHHh-------hcc---cCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCC
Q 014817          184 ETECME-------IAS---DADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLS  253 (418)
Q Consensus       184 ~~~~~~-------~i~---~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~  253 (418)
                      ....+.       .+-   +...-..++..|.+.+. .+..++.++..+   ...+-.   .....+.++.|+..+.++.
T Consensus        69 ~~~~~~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i---~~~~~p---~~~Wpeli~~L~~~l~~~~  141 (876)
T d1qgra_          69 DPDIKAQYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGI---ACAEIP---VNQWPELIPQLVANVTNPN  141 (876)
T ss_dssp             SHHHHHHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHH---HHHHGG---GTCCTTHHHHHHHHHHCTT
T ss_pred             ccchhhhhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHH---HHHHCC---ccccHHHHHHHHHHhcCCC
Confidence            111111       111   12334567778877653 455677888888   433211   1123578999999998764


Q ss_pred             CChhhhHHHHHHHHHHccccccHH-HHHHcCchHHHHHHhcCCC--cccHHHHHHHHHHHhcCHhHHH--HHHhccCChH
Q 014817          254 SYPRGLKVGIKALFALCLVKQTRY-KAVAAGAAETLVDRLADFD--KCDAERALATVELLCRIPAGCA--EFAEHALTVP  328 (418)
Q Consensus       254 ~~~~~~~~a~~aL~~L~~~~~n~~-~i~~~G~v~~Lv~lL~~~~--~~~~~~a~~~L~~L~~~~~~~~--~i~~~~g~i~  328 (418)
                      .+...+..++.+|..++..-.... .-.-...++.+++.+.+.+  ..++..++.++.+.........  .... .-.+.
T Consensus       142 ~~~~~~~~~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~-~~i~~  220 (876)
T d1qgra_         142 STEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESER-HFIMQ  220 (876)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHH-HHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHH-HHHHH
Confidence            356778889999999875322111 1111346778888886543  4567778887776653211110  1111 12344


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHh
Q 014817          329 LLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRD  397 (418)
Q Consensus       329 ~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~  397 (418)
                      .+...+...+..++..++.+|..++...++....-....+...+...+.+. .+.++..+...+..++.
T Consensus       221 ~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         221 VVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHH
Confidence            555555668889999999999998874443333333334455555555555 77777777776666654

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.0013  Score=69.59  Aligned_cols=231  Identities=11%  Similarity=0.013  Sum_probs=138.8

Q ss_pred             HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Q 014817          148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMR  227 (418)
Q Consensus       148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~  227 (418)
                      +..|++-+.+.       |++++.-|+.-|.+....+.-....-.....++.|++.|.+.++++|..|+..|..|+  ..
T Consensus         5 ~~~ll~k~~~~-------D~d~R~ma~~dl~~~l~~~~~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~--~~   75 (1207)
T d1u6gc_           5 ISNLLEKMTSS-------DKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLV--SK   75 (1207)
T ss_dssp             HHHHHHHTTCS-------SHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH--TT
T ss_pred             HHHHHHhcCCC-------CHhHHHHHHHHHHHHHhhcccccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH--Hh
Confidence            44555556555       5788888876555322111000000001235789999999999999999999999995  22


Q ss_pred             chhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc------cHHHHHHcCchHHHHHHhcC-CCcccH
Q 014817          228 SQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ------TRYKAVAAGAAETLVDRLAD-FDKCDA  300 (418)
Q Consensus       228 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~------n~~~i~~~G~v~~Lv~lL~~-~~~~~~  300 (418)
                      ..+   ...  ...++.|+..+.++  +...+..+..+|..+...-.      .....+-...++.+...+.. .+..++
T Consensus        76 ~~~---~~~--~~l~~~L~~~l~~~--~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~  148 (1207)
T d1u6gc_          76 VKE---YQV--ETIVDTLCTNMLSD--KEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQ  148 (1207)
T ss_dssp             SCH---HHH--HHHHHHHHHHTTCS--SSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHH
T ss_pred             CcH---hhH--HHHHHHHHHHhcCC--chhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHH
Confidence            222   221  34778888877776  67788888888877643211      11111122234444444433 345677


Q ss_pred             HHHHHHHHHHhcCHh-HHHHHHhccCChHHHHHHHhcCChHHHHHHHHHHHHHhcCCHHHHHHHHhcChHHHHHHHHhhC
Q 014817          301 ERALATVELLCRIPA-GCAEFAEHALTVPLLVKTILKISDRATEYAAGALAALCSASERCQRDAVSAGVLTQLLLLVQSD  379 (418)
Q Consensus       301 ~~a~~~L~~L~~~~~-~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~  379 (418)
                      ..++.+|..+...-. .-....  ...++.++..+.+.+..+++.|+.+|..++...+..    .-...+..++..+..+
T Consensus       149 ~~al~~l~~l~~~~g~~l~~~~--~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~~----~~~~~~~~ll~~l~~~  222 (1207)
T d1u6gc_         149 LEALDIMADMLSRQGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNI----VFVDLIEHLLSELSKN  222 (1207)
T ss_dssp             HHHHHHHHHHHHHTCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC--------CTTHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhHhhHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCHH----HHHHHHHHHHHHHccC
Confidence            888888887763111 000000  123556666677788999999999999998733321    1134677777777655


Q ss_pred             CCHHHHHHHHHHHHHHHhhCC
Q 014817          380 CTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       380 ~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      .+...++.+..++..+.+...
T Consensus       223 ~~~~~~~~~~~~l~~l~~~~~  243 (1207)
T d1u6gc_         223 DSMSTTRTYIQCIAAISRQAG  243 (1207)
T ss_dssp             CSSCSCTTHHHHHHHHHHHSS
T ss_pred             CCHHHHHHHHHHHHHHHHHcc
Confidence            466677778888888877643

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.56  E-value=0.99  Score=39.08  Aligned_cols=194  Identities=16%  Similarity=0.142  Sum_probs=132.9

Q ss_pred             HHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhh----hHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          106 TLLNQASSESNTYGSRLSALRRLRGLARDSDKNR----SLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       106 ~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~----~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      .|+..|..-  +-+.|-.+......+.+.....|    +.+...  -+.|..++..-+      ++++.-.+...|+.+.
T Consensus        73 ~Li~~L~~L--~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~--~eil~~L~~gye------~~eiAl~~G~mLREci  142 (330)
T d1upka_          73 TLVADLQLI--DFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ--QNILFMLLKGYE------SPEIALNCGIMLRECI  142 (330)
T ss_dssp             HHHHTGGGS--CHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC--THHHHHHHHGGG------STTTHHHHHHHHHHHH
T ss_pred             HHHHhCCCC--CCchhhhHHHHHHHHhhcCCCCCCccHHHHHcC--HHHHHHHHhhcC------CcchhhhhhHHHHHHH
Confidence            344444332  33344455555555554443333    333321  123333333322      6778888888899888


Q ss_pred             CChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh--chhhhHHHHHHHhhcCCCChhhh
Q 014817          182 LTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS--NLDEIFEGVIDILKNLSSYPRGL  259 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~--~~~g~i~~Lv~lL~~~~~~~~~~  259 (418)
                      ... ...+.|.....+..+.+.++.++-++...|..++..|.  ..++.......  ....++...-.+|.++  +--++
T Consensus       143 k~e-~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelL--t~hk~~~aefl~~Nyd~Ff~~~~~LL~s~--NYVtr  217 (330)
T d1upka_         143 RHE-PLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLL--TRHKLLSAEFLEQHYDRFFSEYEKLLHSE--NYVTK  217 (330)
T ss_dssp             TSH-HHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHH--HSSHHHHHHHHHHTHHHHHHHHHHHTTCS--SHHHH
T ss_pred             hhH-HHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHH--HhCHHHHHHHHHHhHHHHHHHHHHHhcCC--chHHH
Confidence            777 56666777777899999999999999999999999997  66654333332  2234677778889888  89999


Q ss_pred             HHHHHHHHHHccccccHHHHHH----cCchHHHHHHhcCCCcccHHHHHHHHHHHhcCH
Q 014817          260 KVGIKALFALCLVKQTRYKAVA----AGAAETLVDRLADFDKCDAERALATVELLCRIP  314 (418)
Q Consensus       260 ~~a~~aL~~L~~~~~n~~~i~~----~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~  314 (418)
                      ..++..|..|-....|..-|..    ..-+..++.+|++.+..++-.|-.+....+.++
T Consensus       218 RqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         218 RQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCC
Confidence            9999999999988887766643    346777888888888888888888877666443

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.15  E-value=1.8  Score=38.15  Aligned_cols=185  Identities=14%  Similarity=0.094  Sum_probs=108.9

Q ss_pred             HHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhh-HHhhcChHHHHHHHhhcccc----cccCCChhHHHHHHHHHhcC
Q 014817          106 TLLNQASSESNTYGSRLSALRRLRGLARDSDKNRS-LISSHNVRAILSQVFFTNIN----VKTASSPELAHESLALLVMF  180 (418)
Q Consensus       106 ~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~-~i~~~g~i~~Lv~lL~~~~~----~~~~~~~~v~~~a~~~L~~l  180 (418)
                      ..|..|++...+.. ...-+..|+.-.+.++..+- .| ..+|+..|+.+|..-..    .....+...+..++.+|..+
T Consensus         6 ~yv~~l~~~~~~~~-~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkal   83 (343)
T d2bnxa1           6 MYIQELRSGLRDMH-LLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF   83 (343)
T ss_dssp             HHHHHHTSCCCHHH-HHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCccH-HHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHH
Confidence            45667766533221 23345555543444444333 34 57789999998853210    00111345677788888877


Q ss_pred             CCChhHHHhhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhhhHhh---------chhhhHHHHHHHhhc
Q 014817          181 PLTETECMEIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELRAQIS---------NLDEIFEGVIDILKN  251 (418)
Q Consensus       181 ~~~~~~~~~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~---------~~~g~i~~Lv~lL~~  251 (418)
                      ..........+...+++..|+..|.+....++..|+.+|..++.-+..++....+-         ...+-..++++.++.
T Consensus        84 mn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~  163 (343)
T d2bnxa1          84 MNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  163 (343)
T ss_dssp             TSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTST
T ss_pred             hccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhc
Confidence            76664445555678999999999999999999999999998841011111111111         112345677887877


Q ss_pred             CCCChhhhHHHHHHHHHHccccc-------cHHHHHHcCchHHHHHHhcC
Q 014817          252 LSSYPRGLKVGIKALFALCLVKQ-------TRYKAVAAGAAETLVDRLAD  294 (418)
Q Consensus       252 ~~~~~~~~~~a~~aL~~L~~~~~-------n~~~i~~~G~v~~Lv~lL~~  294 (418)
                      +. +.+.+..++..+-.|..+.+       -|..+..+|.. .++.-|..
T Consensus       164 ~~-~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~Gl~-~il~~l~~  211 (343)
T d2bnxa1         164 GT-SIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH-QVLQELRE  211 (343)
T ss_dssp             TS-CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH-HHHHHHTT
T ss_pred             cc-cHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCChH-HHHHHHHc
Confidence            63 55666666666666655433       34555566655 45666654

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=92.00  E-value=3.6  Score=35.94  Aligned_cols=230  Identities=10%  Similarity=0.072  Sum_probs=126.4

Q ss_pred             cHHHHHHHHHHHHhccCCCcccCCCCCCCCChHHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhc----
Q 014817           70 NHTLRRLIQDWCVANRSFGVQRIPTPKQPAEPSLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSH----  145 (418)
Q Consensus        70 n~~L~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~----  145 (418)
                      ...+.++++..++.+.. +++       .-.+.....||+.|..-+      .+.+..+..-.+..+..|..+.++    
T Consensus        19 ~~~~~~~l~~L~~~~~~-~v~-------~~~~~kF~~Lv~~lR~~~------~e~l~~v~~~~~~~~~~r~~~lDal~~~   84 (336)
T d1lsha1          19 ESEIHTVLKHLVENNQL-SVH-------EDAPAKFLRLTAFLRNVD------AGVLQSIWHKLHQQKDYRRWILDAVPAM   84 (336)
T ss_dssp             HHHHHHHHHHHHHHCSS-SCC-------TTHHHHHHHHHHHHTTSC------HHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccc-ccC-------cchHHHHHHHHHHHHCCC------HHHHHHHHHHHhcChhHHHHHHHHHHHh
Confidence            34567777777776432 221       011244667887777653      234555555445566667766542    


Q ss_pred             C---hHHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcC----CCHHHHHHHHHH
Q 014817          146 N---VRAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFH----SSIEVRVNSAAL  218 (418)
Q Consensus       146 g---~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~----~~~~~~~~a~~~  218 (418)
                      |   ++..+.+++.+..-     ...-....+..|......+         ...+..+..++.+    .++.++..+.-+
T Consensus        85 GT~~a~~~i~~~I~~~~l-----s~~ea~~~l~~l~~~~~Pt---------~~~l~~~~~l~~~~~~~~~~~l~~~a~La  150 (336)
T d1lsha1          85 ATSEALLFLKRTLASEQL-----TSAEATQIVASTLSNQQAT---------RESLSYARELLNTSFIRNRPILRKTAVLG  150 (336)
T ss_dssp             CSHHHHHHHHHHHHTTCS-----CHHHHHHHHHHHHHTCCCC---------HHHHHHHHHHHTCHHHHTCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHhccCCCC---------HHHHHHHHHHHcCcccccchhHHHHHHHH
Confidence            4   55667777765432     2222233334444433322         1235566666654    467788888888


Q ss_pred             HHHHHhcccchhhhhHhhchhhhHHHHHH----HhhcCCCChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcC
Q 014817          219 IEIVLAGMRSQELRAQISNLDEIFEGVID----ILKNLSSYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLAD  294 (418)
Q Consensus       219 L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~----lL~~~~~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~  294 (418)
                      +.+|+.  ..-.+... .. ...++.+..    ....+  +.+....++.+|.|+-.          .+.++.|..++..
T Consensus       151 ~gslv~--~~c~~~~~-~~-~~~~~~l~~~l~~~~~~~--~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~  214 (336)
T d1lsha1         151 YGSLVF--RYCANTVS-CP-DELLQPLHDLLSQSSDRA--KEEEIVLALKALGNAGQ----------PNSIKKIQRFLPG  214 (336)
T ss_dssp             HHHHHH--HHHTTCSS-CC-GGGTHHHHHHHHHHHHTT--CHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTT
T ss_pred             HHHHHH--HHhcCCCC-Cc-HHHHHHHHHHHHHhhccc--chHHHHHHHHHHhccCC----------HhHHHHHHHHhcc
Confidence            887742  11111000 01 223444444    44455  66777788999999853          2345667777643


Q ss_pred             C-------CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhc--CChHHHHHHHHHHHH
Q 014817          295 F-------DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILK--ISDRATEYAAGALAA  351 (418)
Q Consensus       295 ~-------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~--~~~~~~~~A~~~L~~  351 (418)
                      .       ...++..|+.+|.+++....  ..+      .+.+..++.+  .+..++-.|..+|..
T Consensus       215 ~~~~~~~~~~~vR~aAi~Alr~~~~~~p--~~v------~~~l~~i~~n~~e~~EvRiaA~~~lm~  272 (336)
T d1lsha1         215 QGKSLDEYSTRVQAEAIMALRNIAKRDP--RKV------QEIVLPIFLNVAIKSELRIRSCIVFFE  272 (336)
T ss_dssp             SSSCCCCSCHHHHHHHHHTTTTGGGTCH--HHH------HHHHHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred             cccccccccHHHHHHHHHHHHHhhhcCc--HHH------HHHHHHHHcCCCCChHHHHHHHHHHHh
Confidence            2       23577888999988875421  111      1234445544  567788888877766

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.35  E-value=0.033  Score=47.06  Aligned_cols=102  Identities=14%  Similarity=0.046  Sum_probs=44.7

Q ss_pred             hHHHHHHhcCCCHHHHHHHHHH-----HHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHH----
Q 014817          197 ITSLSSLLFHSSIEVRVNSAAL-----IEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALF----  267 (418)
Q Consensus       197 i~~Lv~~L~~~~~~~~~~a~~~-----L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~----  267 (418)
                      .+.|..++++++..+|..++..     |..++. ..+.+.+..++. .-..+.|..++++.  ++.++..++..|.    
T Consensus       116 ~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L~~-D~d~~VR~~aA~-~~~~~~L~~l~~D~--d~~VR~~aa~~L~~~~L  191 (233)
T d1lrva_         116 LEQLEQMAADRDYLVRAYVVQRIPPGRLFRFMR-DEDRQVRKLVAK-RLPEESLGLMTQDP--EPEVRRIVASRLRGDDL  191 (233)
T ss_dssp             TGGGGGGTTCSSHHHHHHHHHHSCGGGGGGTTT-CSCHHHHHHHHH-HSCGGGGGGSTTCS--SHHHHHHHHHHCCGGGG
T ss_pred             HHHHHHHhcCCCHHHHHHHHhccchhHHHHHhc-CCCHHHHHHHHH-hcCHHHHHHHccCC--CHHHHHHHHHhcCcHHH
Confidence            3455555666666666655442     222210 012223333322 11234455566665  6777776665431    


Q ss_pred             -HHccccc--cHHHHHHcCchHHHHHHhcCCCcccHHHH
Q 014817          268 -ALCLVKQ--TRYKAVAAGAAETLVDRLADFDKCDAERA  303 (418)
Q Consensus       268 -~L~~~~~--n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a  303 (418)
                       .|....+  -|..+++. +.+.++..|.+.+..+++.+
T Consensus       192 ~~l~~D~d~~VR~aaae~-~~~~ll~~L~D~d~~VR~aA  229 (233)
T d1lrva_         192 LELLHDPDWTVRLAAVEH-ASLEALRELDEPDPEVRLAI  229 (233)
T ss_dssp             GGGGGCSSHHHHHHHHHH-SCHHHHHHCCCCCHHHHHHH
T ss_pred             HHHHhCCCHHHHHHHHHh-ccHHHHHHhCCCCHHHHHHH
Confidence             2222211  22333333 33445555555555555444

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.07  E-value=4.2  Score=34.97  Aligned_cols=203  Identities=15%  Similarity=0.013  Sum_probs=145.2

Q ss_pred             hhcccCCchHHHHHHhcCCCHHHHHHHHHHHHHHHhcccchhhh----hHhhchhhhHHHHHHHhhcCCCChhhhHHHHH
Q 014817          189 EIASDADKITSLSSLLFHSSIEVRVNSAALIEIVLAGMRSQELR----AQISNLDEIFEGVIDILKNLSSYPRGLKVGIK  264 (418)
Q Consensus       189 ~~i~~~g~i~~Lv~~L~~~~~~~~~~a~~~L~~L~~~s~~~~~~----~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~  264 (418)
                      ..+...+.+..|+..|..=+-+.|..++.+..++..  ...+.+    +.+.....++..|+   .... +++..-.+-.
T Consensus        63 ~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR--~~~~~~~p~v~Yl~~~~eil~~L~---~gye-~~eiAl~~G~  136 (330)
T d1upka_          63 QELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILR--RQIGTRTPTVEYICTQQNILFMLL---KGYE-SPEIALNCGI  136 (330)
T ss_dssp             HHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHT--CCBTTBCHHHHHHHTCTHHHHHHH---HGGG-STTTHHHHHH
T ss_pred             HHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhh--cCCCCCCccHHHHHcCHHHHHHHH---hhcC-CcchhhhhhH
Confidence            344456889999999999999999999999999952  222222    22333333444333   3322 5677778888


Q ss_pred             HHHHHccccccHHHHHHcCchHHHHHHhcCCCcccHHHHHHHHHHHh-cCHhHHHHHHhc--cCChHHHHHHHhcCChHH
Q 014817          265 ALFALCLVKQTRYKAVAAGAAETLVDRLADFDKCDAERALATVELLC-RIPAGCAEFAEH--ALTVPLLVKTILKISDRA  341 (418)
Q Consensus       265 aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~--~g~i~~Lv~~l~~~~~~~  341 (418)
                      .|+....+..-...+....-+..+.+.+..++=++...|..++..|- .+......+...  ......+-++|.++|-..
T Consensus       137 mLREcik~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVt  216 (330)
T d1upka_         137 MLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVT  216 (330)
T ss_dssp             HHHHHHTSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHhhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHH
Confidence            88888888888889999999999999999888888889999997555 566555555442  135556677788899999


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHH---h-cChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhC
Q 014817          342 TEYAAGALAALCSASERCQRDAV---S-AGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       342 ~~~A~~~L~~l~~~~~~~~~~~~---~-~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      +.++++.|..|-. ++.+...|.   + ..-+..++.+|.+. +..++-.|--+.+.+..+.
T Consensus       217 rRqSlKLLgelLl-dr~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         217 KRQSLKLLGELLL-DRHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHHHHHHHH-SGGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHh-hhhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhcCC
Confidence            9999999999876 333333322   2 34566677777666 8888888888888877764

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.00  E-value=2.3  Score=37.37  Aligned_cols=118  Identities=19%  Similarity=0.169  Sum_probs=86.7

Q ss_pred             HcCchHHHHHHhc----CC-------CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHHHHHHhcCChHHHHHHHHHH
Q 014817          281 AAGAAETLVDRLA----DF-------DKCDAERALATVELLCRIPAGCAEFAEHALTVPLLVKTILKISDRATEYAAGAL  349 (418)
Q Consensus       281 ~~G~v~~Lv~lL~----~~-------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~~~L  349 (418)
                      .++|+..|+.+|.    .+       +....-.++.+|..|..+..|...+..+..++..++..+.+.+..++..|..+|
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL  122 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  122 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHH
Confidence            4567888888774    11       123456789999999999999999999999999999999989999999999999


Q ss_pred             HHHhcC-C-H--H--H------HHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhh
Q 014817          350 AALCSA-S-E--R--C------QRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDS  398 (418)
Q Consensus       350 ~~l~~~-~-~--~--~------~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~  398 (418)
                      ..+|.. . +  .  .      .....+.+-+..++.-+..+.+...+-.+..++..+...
T Consensus       123 ~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~  183 (343)
T d2bnxa1         123 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITP  183 (343)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcC
Confidence            999962 1 1  1  1      122334466777777776665666776666666666543

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=90.28  E-value=2.2  Score=37.34  Aligned_cols=216  Identities=11%  Similarity=0.056  Sum_probs=113.1

Q ss_pred             HHHHHHHHHhhcCCCchhhhHHHHHHHHHhhhcChhhhhHHhhcChHHHHHHHhhcccccccCCChhHHHHHHHHHhcCC
Q 014817          102 SLVRTLLNQASSESNTYGSRLSALRRLRGLARDSDKNRSLISSHNVRAILSQVFFTNINVKTASSPELAHESLALLVMFP  181 (418)
Q Consensus       102 ~~i~~lv~~L~~~~~~~~~~~~Al~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~  181 (418)
                      ..+..+.+.+.+..-..   ..|...+..+......+.      ..+..+..++.+....   .++.+...++-+++.+.
T Consensus        88 ~a~~~i~~~I~~~~ls~---~ea~~~l~~l~~~~~Pt~------~~l~~~~~l~~~~~~~---~~~~l~~~a~La~gslv  155 (336)
T d1lsha1          88 EALLFLKRTLASEQLTS---AEATQIVASTLSNQQATR------ESLSYARELLNTSFIR---NRPILRKTAVLGYGSLV  155 (336)
T ss_dssp             HHHHHHHHHHHTTCSCH---HHHHHHHHHHHHTCCCCH------HHHHHHHHHHTCHHHH---TCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCH---HHHHHHHHHHhccCCCCH------HHHHHHHHHHcCcccc---cchhHHHHHHHHHHHHH
Confidence            34555566565543222   234444444432211111      1344555666432100   14566666666665553


Q ss_pred             CChhHHHhhcccCCchHHHHHHh----cCCCHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCC----
Q 014817          182 LTETECMEIASDADKITSLSSLL----FHSSIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLS----  253 (418)
Q Consensus       182 ~~~~~~~~~i~~~g~i~~Lv~~L----~~~~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~----  253 (418)
                      ..-.. ...-.....++.+...+    ..++.+.+..+..+|+|+   . .          .+.++.|..++....    
T Consensus       156 ~~~c~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~---g-~----------p~~i~~l~~~l~~~~~~~~  220 (336)
T d1lsha1         156 FRYCA-NTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNA---G-Q----------PNSIKKIQRFLPGQGKSLD  220 (336)
T ss_dssp             HHHHT-TCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---T-C----------GGGHHHHHTTSTTSSSCCC
T ss_pred             HHHhc-CCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhcc---C-C----------HhHHHHHHHHhcccccccc
Confidence            21100 00001122344444444    456777777788888888   2 1          345677777775421    


Q ss_pred             -CChhhhHHHHHHHHHHccccccHHHHHHcCchHHHHHHhcCC--CcccHHHHHHHHHHHhcCHhHHHHHHhccCChHHH
Q 014817          254 -SYPRGLKVGIKALFALCLVKQTRYKAVAAGAAETLVDRLADF--DKCDAERALATVELLCRIPAGCAEFAEHALTVPLL  330 (418)
Q Consensus       254 -~~~~~~~~a~~aL~~L~~~~~n~~~i~~~G~v~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~L  330 (418)
                       ....++..|.++|++++......       +.+.+..+..+.  +.+++..|..+|..-  .|.        ...+..+
T Consensus       221 ~~~~~vR~aAi~Alr~~~~~~p~~-------v~~~l~~i~~n~~e~~EvRiaA~~~lm~t--~P~--------~~~l~~i  283 (336)
T d1lsha1         221 EYSTRVQAEAIMALRNIAKRDPRK-------VQEIVLPIFLNVAIKSELRIRSCIVFFES--KPS--------VALVSMV  283 (336)
T ss_dssp             CSCHHHHHHHHHTTTTGGGTCHHH-------HHHHHHHHHHCTTSCHHHHHHHHHHHHHT--CCC--------HHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhhhcCcHH-------HHHHHHHHHcCCCCChHHHHHHHHHHHhc--CCC--------HHHHHHH
Confidence             13568999999999997764322       223456666543  456666666555432  221        0123344


Q ss_pred             HHHHhc-CChHHHHHHHHHHHHHhc-CCHHHHH
Q 014817          331 VKTILK-ISDRATEYAAGALAALCS-ASERCQR  361 (418)
Q Consensus       331 v~~l~~-~~~~~~~~A~~~L~~l~~-~~~~~~~  361 (418)
                      ...+.. .+..+.......|.+++. .+|..+.
T Consensus       284 ~~~l~~E~~~QV~sfv~S~l~~la~s~~P~~~~  316 (336)
T d1lsha1         284 AVRLRREPNLQVASFVYSQMRSLSRSSNPEFRD  316 (336)
T ss_dssp             HHHHTTCSCHHHHHHHHHHHHHHTTCCSGGGHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHhCCCcchHH
Confidence            445544 778888888888888887 4444443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.20  E-value=0.082  Score=44.50  Aligned_cols=62  Identities=11%  Similarity=-0.145  Sum_probs=28.5

Q ss_pred             CchHHHHHHhcCCCcccHHHHHHHH-----HHHhc--CHhHHHHHHhccCChHHHHHHHhcCChHHHHHHH
Q 014817          283 GAAETLVDRLADFDKCDAERALATV-----ELLCR--IPAGCAEFAEHALTVPLLVKTILKISDRATEYAA  346 (418)
Q Consensus       283 G~v~~Lv~lL~~~~~~~~~~a~~~L-----~~L~~--~~~~~~~i~~~~g~i~~Lv~~l~~~~~~~~~~A~  346 (418)
                      -..+.|..++.+.+..+...++..|     ..|..  +...|..+.+.  ..+.+++.|...++.+++.|+
T Consensus       162 ~~~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D~d~~VR~aaae~--~~~~ll~~L~D~d~~VR~aA~  230 (233)
T d1lrva_         162 LPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEH--ASLEALRELDEPDPEVRLAIA  230 (233)
T ss_dssp             SCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHH--SCHHHHHHCCCCCHHHHHHHH
T ss_pred             cCHHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhCCCHHHHHHHHHh--ccHHHHHHhCCCCHHHHHHHH
Confidence            3345555555555555555554322     22222  23344444442  224444555445555555544

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.42  E-value=0.27  Score=33.29  Aligned_cols=46  Identities=22%  Similarity=0.283  Sum_probs=37.1

Q ss_pred             ccCcCcccccc-----CCeec--CCCCcccHHHHHHHHHcCCCCCCCCCCCCC
Q 014817           18 FRCPISLELMC-----DPVTV--CTGQTYDRPSIESWVATGNTTCPVTRSPLT   63 (418)
Q Consensus        18 ~~Cpi~~~~~~-----dPv~~--~~g~~~~r~~i~~~~~~~~~~cp~~~~~l~   63 (418)
                      -.|.||++-.-     +|.+-  .|+.-.||.|.+-=.++++..||.|+.++.
T Consensus        17 q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Yk   69 (93)
T d1weoa_          17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             chhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhh
Confidence            37999988654     34444  589999999999888888999999998874

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=89.27  E-value=0.61  Score=35.69  Aligned_cols=75  Identities=8%  Similarity=0.115  Sum_probs=62.1

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhcC-CHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCSA-SERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~~-~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ++..|.+.|.++++.++..|+.+|-.+... .+....++.+.+.+..|..++.+..+..+++++..+++..+....
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~  118 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYAFR  118 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhC
Confidence            355677788889999999999999988873 456777787888999999999877678899999999999888654

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=85.30  E-value=7.2  Score=38.46  Aligned_cols=180  Identities=9%  Similarity=0.097  Sum_probs=98.3

Q ss_pred             CHHHHHHHHHHHHHHHhcccchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHcccccc---------HHH
Q 014817          208 SIEVRVNSAALIEIVLAGMRSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQT---------RYK  278 (418)
Q Consensus       208 ~~~~~~~a~~~L~~L~~~s~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~n---------~~~  278 (418)
                      ...++..+++++...   +.... ....   ..+++.++..|.+.  +..++..|+++|..++.....         ...
T Consensus       471 ~~~lr~~~~~~i~~~---~~~~~-~~~~---~~~~~~l~~~L~~~--~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~  541 (959)
T d1wa5c_         471 HIILRVDAIKYIYTF---RNQLT-KAQL---IELMPILATFLQTD--EYVVYTYAAITIEKILTIRESNTSPAFIFHKED  541 (959)
T ss_dssp             CHHHHHHHHHHHHHT---GGGSC-HHHH---HHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGG
T ss_pred             hHHHHHHHHHHHHHH---Hhhcc-HHHH---HHHHHHHHHHhCCC--chhHHHHHHHHHHHHHHhhcccccchhhccHHH
Confidence            477888888888888   43221 1222   35889999999987  899999999999999754321         011


Q ss_pred             HHH--cCchHHHHHHhcCCCcc-----cHHHHHHHHHHHhcCH-hHHHHHHhccCChHHHHHHHhc-----CChHHHHHH
Q 014817          279 AVA--AGAAETLVDRLADFDKC-----DAERALATVELLCRIP-AGCAEFAEHALTVPLLVKTILK-----ISDRATEYA  345 (418)
Q Consensus       279 i~~--~G~v~~Lv~lL~~~~~~-----~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~~l~~-----~~~~~~~~A  345 (418)
                      +..  ...+..|+..+......     ..+..+.+|..+...- +.......  ..++.++..+..     .++......
T Consensus       542 l~p~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~~--~i~~~l~~~~~~~~~~~~~~~~~~~~  619 (959)
T d1wa5c_         542 ISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLFP--QLLAQFIEIVTIMAKNPSNPRFTHYT  619 (959)
T ss_dssp             TTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGHH--HHHHHHHHHHHHHTTSCCCHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCccchHHHHHH
Confidence            100  12344555555433222     1233555665554211 11111111  123344444432     234455556


Q ss_pred             HHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhhCCCHHHHHHHHHHHHHHHhhCC
Q 014817          346 AGALAALCS-ASERCQRDAVSAGVLTQLLLLVQSDCTDRAKRKAQLLLKLLRDSWP  400 (418)
Q Consensus       346 ~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~~~~~~~~~~A~~~L~~l~~~~~  400 (418)
                      ..+|..+.. .+++... ......++.+...++.. .......+..++..+.....
T Consensus       620 ~e~l~~l~~~~~~~~~~-~l~~~l~p~i~~~~~~~-~~~~~~~~~~l~~~~~~~~~  673 (959)
T d1wa5c_         620 FESIGAILNYTQRQNLP-LLVDSMMPTFLTVFSED-IQEFIPYVFQIIAFVVEQSA  673 (959)
T ss_dssp             HHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHHHTT-CTTTHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhcCchhHH-HHHHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHHhCC
Confidence            566666554 2333222 23355677777777655 45556677778877777643

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.56  E-value=1.7  Score=32.98  Aligned_cols=73  Identities=18%  Similarity=0.163  Sum_probs=60.1

Q ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhC
Q 014817          327 VPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQS-----DCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       327 i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      +..|-+.|.+.++.++..|+.+|-.+.. ..+.+..++.+.+.+..|+.++..     ..+..+|++...+++.-....
T Consensus        47 ~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          47 TRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            5567788888999999999999988888 468888999999999999999952     236789999998888876643

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.09  E-value=1.8  Score=43.10  Aligned_cols=137  Identities=11%  Similarity=0.073  Sum_probs=94.6

Q ss_pred             HHHHHHHhhcccccccCCChhHHHHHHHHHhcCCCChhHHHhhcccCCchHHHHHHhcCC--CHHHHHHHHHHHHHHHhc
Q 014817          148 RAILSQVFFTNINVKTASSPELAHESLALLVMFPLTETECMEIASDADKITSLSSLLFHS--SIEVRVNSAALIEIVLAG  225 (418)
Q Consensus       148 i~~Lv~lL~~~~~~~~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~  225 (418)
                      ++.+.++|....      +++.++.|-.-|..+..          .+|++..|+.++.+.  +..+|..|+-.|+|....
T Consensus         4 ~~~l~~ll~~s~------~~~~~k~Ae~~L~~~~~----------~p~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~   67 (959)
T d1wa5c_           4 LETVAKFLAESV------IASTAKTSERNLRQLET----------QDGFGLTLLHVIASTNLPLSTRLAGALFFKNFIKR   67 (959)
T ss_dssp             HHHHHHHHHHTT------SGGGHHHHHHHHHHHHT----------STTHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC------ChHHHHHHHHHHHHHHc----------CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            466777776654      56677777776655432          358899999998765  478999999999998631


Q ss_pred             c---------cchhhhhHhhchhhhHHHHHHHhhcCCCChhhhHHHHHHHHHHccccc-cHHHHHHcCchHHHHHHhcCC
Q 014817          226 M---------RSQELRAQISNLDEIFEGVIDILKNLSSYPRGLKVGIKALFALCLVKQ-TRYKAVAAGAAETLVDRLADF  295 (418)
Q Consensus       226 s---------~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~a~~aL~~L~~~~~-n~~~i~~~G~v~~Lv~lL~~~  295 (418)
                      .         ..++.|..|      -..|+..+.+.  +..++...+.++..++..+- +..    .+.++.|++.+.++
T Consensus        68 ~W~~~~~~~~i~~e~k~~I------k~~ll~~l~~~--~~~ir~~l~~~i~~I~~~d~p~~W----p~ll~~l~~~l~s~  135 (959)
T d1wa5c_          68 KWVDENGNHLLPANNVELI------KKEIVPLMISL--PNNLQVQIGEAISSIADSDFPDRW----PTLLSDLASRLSND  135 (959)
T ss_dssp             HSBCSSSCBSSCHHHHHHH------HHHHHHHHHHS--CHHHHHHHHHHHHHHHHHHSTTTC----TTHHHHHHTTCCSS
T ss_pred             hcccccccCCCCHHHHHHH------HHHHHHHHhCC--cHHHHHHHHHHHHHHHHHhCcccc----HHHHHHHHHHhCCC
Confidence            1         112223333      23455556566  67888889999998886542 111    36788899999888


Q ss_pred             CcccHHHHHHHHHHHhc
Q 014817          296 DKCDAERALATVELLCR  312 (418)
Q Consensus       296 ~~~~~~~a~~~L~~L~~  312 (418)
                      +......++.+|..++.
T Consensus       136 ~~~~~~~~L~~l~~i~k  152 (959)
T d1wa5c_         136 DMVTNKGVLTVAHSIFK  152 (959)
T ss_dssp             CTTHHHHHHHHHHHHHG
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            88888889999988873

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.52  E-value=1.6  Score=33.18  Aligned_cols=75  Identities=17%  Similarity=0.200  Sum_probs=61.2

Q ss_pred             ChHHHHHHHhcCChHHHHHHHHHHHHHhc-CCHHHHHHHHhcChHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhC
Q 014817          326 TVPLLVKTILKISDRATEYAAGALAALCS-ASERCQRDAVSAGVLTQLLLLVQS-----DCTDRAKRKAQLLLKLLRDSW  399 (418)
Q Consensus       326 ~i~~Lv~~l~~~~~~~~~~A~~~L~~l~~-~~~~~~~~~~~~g~i~~L~~ll~~-----~~~~~~~~~A~~~L~~l~~~~  399 (418)
                      ++..|.+.|.++++.++..|+.+|-.+.. ..+.+..++.+...+..|+.++..     ..+..+|+++..+++..+...
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            35567888888999999999999888877 457888888888999999998853     236789999999999887754


Q ss_pred             C
Q 014817          400 P  400 (418)
Q Consensus       400 ~  400 (418)
                      +
T Consensus       119 ~  119 (143)
T d1mhqa_         119 P  119 (143)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d6rxna_ g.41.5.1 (A:) Rubredoxin {Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Rubredoxin
species: Desulfovibrio desulfuricans, strain 27774 [TaxId: 876]

Probab=80.37  E-value=0.23  Score=29.61  Aligned_cols=15  Identities=27%  Similarity=0.514  Sum_probs=12.7

Q ss_pred             CCCCCcccCcCcccc
Q 014817           12 VQIPYHFRCPISLEL   26 (418)
Q Consensus        12 ~~~~~~~~Cpi~~~~   26 (418)
                      .++|+++.||+|+..
T Consensus        24 e~LP~dw~CP~C~a~   38 (45)
T d6rxna_          24 DQLPDDWCCPVCGVS   38 (45)
T ss_dssp             GGSCTTCBCTTTCCB
T ss_pred             HHCCCCCCCcCCCCc
Confidence            479999999999853

>d1ibia2 g.39.1.3 (A:145-175) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: LIM domain
domain: Cysteine-rich (intestinal) protein, CRP, CRIP
species: Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]

Probab=80.19  E-value=0.32  Score=25.31  Aligned_cols=29  Identities=17%  Similarity=0.292  Sum_probs=23.5

Q ss_pred             ccCcCccccccCCeec-CCCCcccHHHHHH
Q 014817           18 FRCPISLELMCDPVTV-CTGQTYDRPSIES   46 (418)
Q Consensus        18 ~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~   46 (418)
                      |+|..|+.-+....+. .-|..||+.|..+
T Consensus         1 frca~cgk~lestt~adkdgeiyck~cyak   30 (31)
T d1ibia2           1 FRCAKCGKSLESTTLTEKEGEIYCKGCYAK   30 (31)
T ss_dssp             EECSSSCCEECSSCSEEETTEEECHHHHHH
T ss_pred             CccccccCccccceeeccCCcEEEeeeeec
Confidence            7899999988776655 5899999998653