Citrus Sinensis ID: 014856

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
MSTESEPPKVQEEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRRVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK
ccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccEEEEcccccccccccEEEEEEEEEEEEEccccccEEEEEEEccccEEEEEEEEccccccHHHHHHHcccccccEEEEEEEEEccccccccccccEEEEEEEEEEEEcccccccccccccccHHHHHHHHHccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEcccEEccccccccccEEccccccEEEEcccHHHHHHHHHHcccccEEEEEcccccccccccccccHHHcEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHcccccccccccccHHHHHHHHHHHcc
ccccccccccHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHccccccHHHHccccccccccccHHHcccEEEEEEEEEEEcccccEEEEEEEcccEEEEEEEccccccHHHHHHHcccccccEEEEEEEEEEcccccccccEEEEEEEEEEEEEEccccccccHHHHcccHHcccHHHHHHcccccccHHHHHHcHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccEEcccccEEcccccccccccEEEEccEEEEEccccHHHHHHHHHccccEEEEEEEEEccccccccccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccccccccccEEEEHHHHHHHHHHccccccccccccHHHHHHHHHHHHHH
msteseppkvqeevdsssQSISKKAAKKEAAKKAKEERRKEAEAAASAASALsieeegplannygdvplqelqsvndpqtgkwseavsgrewtevgalngslkdqevlirgrrvsTVQCLatvkpdsvsKEMVRFVRSLSNESIVDVIGvvsvpdveikgATQQVEVQIKKLYCVSraaktpitiedasrSEAEIEKASKegvqlprvnqdtrlnnrVIDIRTLANQGIFRIQSQVGNIFRQFLlsenfveihtpkliagsseggsavfrldykgqsaclaqspqlhkqmsicgdfgrvfetgpvfraedsythrhlceftglDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAkqypfeplkykpktlrLTFEEGVQMLKDagveidplgdlntesERKLGQLVLEK
msteseppkvqeevdsssqsiskKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGREWtevgalngslkdqevlirgrrvstvqclatvkpdsvskeMVRFVRslsnesivdvIGVVSVPDVEIKGATQQVEVQIKKlycvsraaktpitiedasrseAEIEkaskegvqlprvnqdtrlnnRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVakqypfeplkykpKTLRLTFEEGVQMLKDAGVeidplgdlnteserklgqlvlek
MSTESEPPKVQEEVDsssqsiskkaakkeaakkakeerrkeaeaaasaasalsieeeGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRRVSTVQCLATVKPDSVSKEMVRFVRSLSNEsivdvigvvsvpdvEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK
****************************************************************************************GREWTEVGALNGSLKDQEVLIRGRRVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPIT***************************TRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEI*********************
**************************************************************NYGDVPLQE************SEAVSGREWTEVGALNGSLKDQEVLIRGRRVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPD******TQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEI********QLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK
****************************************************SIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRRVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIED************KEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK
**********************************************************PLANNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRRVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRS**EIEKASK*GVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK
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MSTESEPPKVQEEVDSSSQSISxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRRVSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCVSRAAKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query417 2.2.26 [Sep-21-2011]
P04802 557 Aspartate--tRNA ligase, c yes no 0.920 0.689 0.443 5e-81
Q75JQ1 576 Aspartate--tRNA ligase, c yes no 0.815 0.590 0.400 2e-75
Q922B2 501 Aspartate--tRNA ligase, c yes no 0.709 0.590 0.490 3e-74
P15178 501 Aspartate--tRNA ligase, c yes no 0.817 0.680 0.446 2e-73
Q3SYZ4 501 Aspartate--tRNA ligase, c yes no 0.817 0.680 0.448 8e-73
O74407 580 Aspartate--tRNA ligase, c yes no 0.827 0.594 0.411 3e-72
P14868 501 Aspartate--tRNA ligase, c yes no 0.817 0.680 0.457 4e-72
Q5R9I5 501 Aspartate--tRNA ligase, c yes no 0.808 0.672 0.456 1e-71
Q03577 531 Aspartate--tRNA ligase, c yes no 0.913 0.717 0.404 3e-71
Q559M9 569 Aspartate--tRNA ligase, c no no 0.776 0.569 0.342 1e-51
>sp|P04802|SYDC_YEAST Aspartate--tRNA ligase, cytoplasmic OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=DPS1 PE=1 SV=3 Back     alignment and function desciption
 Score =  301 bits (772), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 189/426 (44%), Positives = 253/426 (59%), Gaps = 42/426 (9%)

Query: 19  QSISKKAAKK----EAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQS 74
           + +SKKA KK    +  ++ KEER  + EA   A    +  E+    +NYG +PL  +QS
Sbjct: 27  KPLSKKALKKLQKEQEKQRKKEERALQLEAEREAREKKAAAEDTA-KDNYGKLPL--IQS 83

Query: 75  VNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRRVSTVQCLATV----------- 123
            +  +TG+       +    V        D+EVL R R  +T Q  AT+           
Sbjct: 84  RDSDRTGQ-------KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGATLAFLTLRQQASL 136

Query: 124 --------KPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGAT-QQVEVQIKKLYC 174
                   K  ++SK MV++  SL+ ESIV V G+V   D  IK AT Q +E+ I K+Y 
Sbjct: 137 IQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSATVQNLEIHITKIYT 196

Query: 175 VSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQ 233
           +S   +  PI +EDASRSEAE E A      LP VN DTRL+ RVID+RT+ NQ IFRIQ
Sbjct: 197 ISETPEALPILLEDASRSEAEAEAAG-----LPVVNLDTRLDYRVIDLRTVTNQAIFRIQ 251

Query: 234 SQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSIC 293
           + V  +FR++L ++ F E+HTPKL+   SEGGS+VF + Y    A LAQSPQ +KQ  I 
Sbjct: 252 AGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIV 311

Query: 294 GDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNN 353
            DF RV+E GPVFRAE+S THRH+ EFTGLD+EM  ++HY EV+D +  LFV IF  L  
Sbjct: 312 ADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPK 371

Query: 354 VCKKELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLG 411
               E+E V KQYP E  K     K +RLT++EG++ML+ AG EI    DL+TE+E+ LG
Sbjct: 372 RFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLG 431

Query: 412 QLVLEK 417
           +LV +K
Sbjct: 432 KLVRDK 437

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
EC: 6EC: .EC: 1EC: .EC: 1EC: .EC: 1EC: 2
>sp|Q75JQ1|SYDC1_DICDI Aspartate--tRNA ligase, cytoplasmic 1 OS=Dictyostelium discoideum GN=aspS1 PE=3 SV=1 Back     alignment and function description
>sp|Q922B2|SYDC_MOUSE Aspartate--tRNA ligase, cytoplasmic OS=Mus musculus GN=Dars PE=2 SV=2 Back     alignment and function description
>sp|P15178|SYDC_RAT Aspartate--tRNA ligase, cytoplasmic OS=Rattus norvegicus GN=Dars PE=2 SV=1 Back     alignment and function description
>sp|Q3SYZ4|SYDC_BOVIN Aspartate--tRNA ligase, cytoplasmic OS=Bos taurus GN=DARS PE=2 SV=1 Back     alignment and function description
>sp|O74407|SYDC_SCHPO Aspartate--tRNA ligase, cytoplasmic OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=dps1 PE=1 SV=1 Back     alignment and function description
>sp|P14868|SYDC_HUMAN Aspartate--tRNA ligase, cytoplasmic OS=Homo sapiens GN=DARS PE=1 SV=2 Back     alignment and function description
>sp|Q5R9I5|SYDC_PONAB Aspartate--tRNA ligase, cytoplasmic OS=Pongo abelii GN=DARS PE=2 SV=1 Back     alignment and function description
>sp|Q03577|SYDC_CAEEL Aspartate--tRNA ligase, cytoplasmic OS=Caenorhabditis elegans GN=drs-1 PE=3 SV=1 Back     alignment and function description
>sp|Q559M9|SYDC2_DICDI Aspartate--tRNA ligase, cytoplasmic 2 OS=Dictyostelium discoideum GN=aspS2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
224087415 530 predicted protein [Populus trichocarpa] 0.942 0.741 0.676 1e-156
357437181 541 Aspartyl-tRNA synthetase [Medicago trunc 0.882 0.680 0.690 1e-155
356552406 543 PREDICTED: aspartyl-tRNA synthetase, cyt 0.942 0.723 0.691 1e-155
356564011 544 PREDICTED: aspartyl-tRNA synthetase, cyt 0.889 0.681 0.701 1e-154
449437092 545 PREDICTED: aspartate--tRNA ligase, cytop 0.887 0.678 0.691 1e-154
449505487 545 PREDICTED: aspartate--tRNA ligase, cytop 0.887 0.678 0.691 1e-154
225429870 544 PREDICTED: aspartyl-tRNA synthetase, cyt 0.971 0.744 0.657 1e-148
255564914 540 aspartyl-tRNA synthetase, putative [Rici 0.944 0.729 0.694 1e-148
30688944 558 aspartyl-tRNA synthetase [Arabidopsis th 1.0 0.747 0.615 1e-143
297802914 557 hypothetical protein ARALYDRAFT_491623 [ 0.966 0.723 0.633 1e-143
>gi|224087415|ref|XP_002308157.1| predicted protein [Populus trichocarpa] gi|222854133|gb|EEE91680.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  556 bits (1433), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 286/423 (67%), Positives = 326/423 (77%), Gaps = 30/423 (7%)

Query: 14  VDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQ 73
           ++  +Q   K   +K+ +K++    RK    AA AAS+LSIEE+ PLA NYG++PLQ+LQ
Sbjct: 1   MNPQNQRAKKLQRRKQQSKRSYVAVRKPLWPAA-AASSLSIEED-PLAANYGNIPLQDLQ 58

Query: 74  SVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRRVST----------------- 116
           S  +            + WT+VG L   LK++EVLIRGR  +T                 
Sbjct: 59  SKVEADL---------KAWTQVGDLTHELKEKEVLIRGRAQTTRAVGKNMAFVVVREKGF 109

Query: 117 -VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLYCV 175
            VQC+ T +PD VSK+MV+F   LS ESIVD+ GVVSVP + IKG TQQVE+Q+ KLYCV
Sbjct: 110 TVQCVVTARPDVVSKQMVKFAAGLSRESIVDIHGVVSVPSIAIKGTTQQVEIQVSKLYCV 169

Query: 176 SRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQS 234
            +A  T PI IEDASRSE EIE+A + G QL RVNQDTRLN RV+D RT ANQGIFRIQ 
Sbjct: 170 DKAMPTLPINIEDASRSEKEIEEALEAGEQLVRVNQDTRLNYRVLDFRTSANQGIFRIQC 229

Query: 235 QVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICG 294
           QV NIFRQFLLSE+FVEIHTPKLIAGSSEGGSAVF+LDYKGQ+ACLAQSPQLHKQM+ICG
Sbjct: 230 QVCNIFRQFLLSEDFVEIHTPKLIAGSSEGGSAVFKLDYKGQAACLAQSPQLHKQMAICG 289

Query: 295 DFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNV 354
           DFGRVFE GPVFRAEDSYTHRHLCEFTGLDVEMEIK+HY+EVMDIVD LFVT+FD LN  
Sbjct: 290 DFGRVFEIGPVFRAEDSYTHRHLCEFTGLDVEMEIKQHYTEVMDIVDHLFVTMFDHLNKK 349

Query: 355 CKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLV 414
           C K LEAV +QYPFEPLKY PKTLRL FEEGVQMLK+AGVEIDP GDLNTESERKLGQLV
Sbjct: 350 CSKYLEAVGRQYPFEPLKYLPKTLRLRFEEGVQMLKEAGVEIDPYGDLNTESERKLGQLV 409

Query: 415 LEK 417
           LEK
Sbjct: 410 LEK 412

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|357437181|ref|XP_003588866.1| Aspartyl-tRNA synthetase [Medicago truncatula] gi|355477914|gb|AES59117.1| Aspartyl-tRNA synthetase [Medicago truncatula] Back     alignment and taxonomy information
>gi|356552406|ref|XP_003544559.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like [Glycine max] Back     alignment and taxonomy information
>gi|356564011|ref|XP_003550250.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic-like [Glycine max] Back     alignment and taxonomy information
>gi|449437092|ref|XP_004136326.1| PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449505487|ref|XP_004162485.1| PREDICTED: aspartate--tRNA ligase, cytoplasmic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|225429870|ref|XP_002283440.1| PREDICTED: aspartyl-tRNA synthetase, cytoplasmic [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564914|ref|XP_002523450.1| aspartyl-tRNA synthetase, putative [Ricinus communis] gi|223537278|gb|EEF38909.1| aspartyl-tRNA synthetase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|30688944|ref|NP_849558.1| aspartyl-tRNA synthetase [Arabidopsis thaliana] gi|30688949|ref|NP_194847.3| aspartyl-tRNA synthetase [Arabidopsis thaliana] gi|7270020|emb|CAB79836.1| aspartate--tRNA ligase-like protein [Arabidopsis thaliana] gi|222424631|dbj|BAH20270.1| AT4G31180 [Arabidopsis thaliana] gi|332660472|gb|AEE85872.1| aspartyl-tRNA synthetase [Arabidopsis thaliana] gi|332660473|gb|AEE85873.1| aspartyl-tRNA synthetase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297802914|ref|XP_002869341.1| hypothetical protein ARALYDRAFT_491623 [Arabidopsis lyrata subsp. lyrata] gi|297315177|gb|EFH45600.1| hypothetical protein ARALYDRAFT_491623 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query417
TAIR|locus:2126306 558 AT4G31180 [Arabidopsis thalian 0.726 0.543 0.665 1.7e-120
TAIR|locus:2116397 532 AT4G26870 [Arabidopsis thalian 0.824 0.646 0.594 5.1e-106
CGD|CAL0001457 578 DPS1-1 [Candida albicans (taxi 0.812 0.586 0.446 3.1e-67
SGD|S000003941 557 DPS1 "Aspartyl-tRNA synthetase 0.817 0.612 0.45 4e-67
ZFIN|ZDB-GENE-061110-135 531 dars "aspartyl-tRNA synthetase 0.709 0.557 0.480 1.3e-66
FB|FBgn0002069 531 Aats-asp "Aspartyl-tRNA synthe 0.808 0.634 0.444 2.2e-66
UNIPROTKB|P14868 501 DARS "Aspartate--tRNA ligase, 0.817 0.680 0.440 1.5e-65
MGI|MGI:2442544 501 Dars "aspartyl-tRNA synthetase 0.764 0.636 0.448 4.1e-65
UNIPROTKB|E2RNQ8 501 DARS "Uncharacterized protein" 0.820 0.682 0.439 6.7e-65
RGD|621167 501 Dars "aspartyl-tRNA synthetase 0.815 0.678 0.436 1.8e-64
TAIR|locus:2126306 AT4G31180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1040 (371.2 bits), Expect = 1.7e-120, Sum P(2) = 1.7e-120
 Identities = 203/305 (66%), Positives = 244/305 (80%)

Query:   115 STVQCLATVKPDS-VSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGATQQVEVQIKKLY 173
             STVQC+ +    + V   MV++++ LS E               + G TQQVE+Q++K+Y
Sbjct:   136 STVQCVVSQSEKTKVGANMVKYLKQLSRESFVDVIGVVTLPKEPLTGTTQQVEIQVRKVY 195

Query:   174 CVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 232
             C++++ AK P+++EDA+RSEA+IE + +      RVNQDTRLN RV+D+RT ANQ IF++
Sbjct:   196 CINKSLAKLPLSVEDAARSEADIEASLQTPSPAARVNQDTRLNYRVLDLRTPANQAIFQL 255

Query:   233 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSI 292
             Q +V   FR+ L  +NFV IHTPKL+AGSSEGGSAVFRL+YKGQ ACLAQSPQLHKQM+I
Sbjct:   256 QYEVEYAFREKLRFKNFVGIHTPKLMAGSSEGGSAVFRLEYKGQPACLAQSPQLHKQMAI 315

Query:   293 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLN 352
             CGD  RVFE GPVFRAEDS+THRHLCEF GLDVEMEI+KHYSE+MD+VD LFV IF SLN
Sbjct:   316 CGDLRRVFEVGPVFRAEDSFTHRHLCEFVGLDVEMEIRKHYSEIMDLVDELFVFIFTSLN 375

Query:   353 NVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQ 412
               CKKEL+AV KQYPFEPLK+ PKTLRLTFEEGVQMLK+AGVE+DPLGDLNTESERKLGQ
Sbjct:   376 ERCKKELQAVGKQYPFEPLKFLPKTLRLTFEEGVQMLKEAGVEVDPLGDLNTESERKLGQ 435

Query:   413 LVLEK 417
             LVLEK
Sbjct:   436 LVLEK 440
GO:0000166 "nucleotide binding" evidence=IEA
GO:0003676 "nucleic acid binding" evidence=IEA
GO:0004812 "aminoacyl-tRNA ligase activity" evidence=IEA
GO:0004815 "aspartate-tRNA ligase activity" evidence=IEA;ISS
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA;ISS
GO:0006418 "tRNA aminoacylation for protein translation" evidence=IEA
GO:0006422 "aspartyl-tRNA aminoacylation" evidence=IEA;ISS
GO:0046686 "response to cadmium ion" evidence=IEP;RCA
GO:0005829 "cytosol" evidence=IDA
GO:0000741 "karyogamy" evidence=RCA
GO:0006094 "gluconeogenesis" evidence=RCA
GO:0006096 "glycolysis" evidence=RCA
GO:0009560 "embryo sac egg cell differentiation" evidence=RCA
GO:0009651 "response to salt stress" evidence=RCA
GO:0051604 "protein maturation" evidence=RCA
TAIR|locus:2116397 AT4G26870 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
CGD|CAL0001457 DPS1-1 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms
SGD|S000003941 DPS1 "Aspartyl-tRNA synthetase" [Saccharomyces cerevisiae (taxid:4932)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-061110-135 dars "aspartyl-tRNA synthetase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
FB|FBgn0002069 Aats-asp "Aspartyl-tRNA synthetase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|P14868 DARS "Aspartate--tRNA ligase, cytoplasmic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:2442544 Dars "aspartyl-tRNA synthetase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RNQ8 DARS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|621167 Dars "aspartyl-tRNA synthetase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer6.1.10.766

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
PLN02850 530 PLN02850, PLN02850, aspartate-tRNA ligase 0.0
PTZ00401 550 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Prov 4e-92
cd00776 322 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/As 3e-91
PRK05159 437 PRK05159, aspC, aspartyl-tRNA synthetase; Provisio 7e-79
TIGR00458 428 TIGR00458, aspS_nondisc, nondiscriminating asparty 1e-75
COG0017 435 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetas 1e-72
pfam00152 345 pfam00152, tRNA-synt_2, tRNA synthetases class II 2e-42
PRK03932 450 PRK03932, asnC, asparaginyl-tRNA synthetase; Valid 5e-28
cd04320102 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, a 3e-27
COG0173 585 COG0173, AspS, Aspartyl-tRNA synthetase [Translati 2e-26
cd00669269 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA syn 6e-26
TIGR00457 453 TIGR00457, asnS, asparaginyl-tRNA synthetase 1e-25
PRK06462 335 PRK06462, PRK06462, asparagine synthetase A; Revie 8e-24
TIGR00459 583 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, ba 1e-21
PRK00476 588 PRK00476, aspS, aspartyl-tRNA synthetase; Validate 2e-21
cd00777280 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) c 2e-17
PRK12820 706 PRK12820, PRK12820, bifunctional aspartyl-tRNA syn 2e-15
PLN02903 652 PLN02903, PLN02903, aminoacyl-tRNA ligase 8e-15
cd00775 329 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) c 1e-12
TIGR00499 496 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukar 6e-10
COG1190 502 COG1190, LysU, Lysyl-tRNA synthetase (class II) [T 2e-09
PRK12445 505 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewe 1e-08
PLN02221 572 PLN02221, PLN02221, asparaginyl-tRNA synthetase 8e-08
PLN02502 553 PLN02502, PLN02502, lysyl-tRNA synthetase 1e-07
cd00768211 cd00768, class_II_aaRS-like_core, Class II tRNA am 4e-07
PTZ00385 659 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisi 6e-06
PTZ00425 586 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provis 8e-06
cd0410085 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-ter 1e-05
PRK00484 491 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed 2e-05
PLN02603 565 PLN02603, PLN02603, asparaginyl-tRNA synthetase 4e-05
PLN02532 633 PLN02532, PLN02532, asparagine-tRNA synthetase 2e-04
PRK09537417 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewe 0.001
>gnl|CDD|215456 PLN02850, PLN02850, aspartate-tRNA ligase Back     alignment and domain information 
 Score =  662 bits (1710), Expect = 0.0
 Identities = 284/425 (66%), Positives = 326/425 (76%), Gaps = 33/425 (7%)

Query: 11  QEEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQ 70
           QE V+ S + ISKKAAKK AAK  K  R    EA A AA+A   +E+ PLA+NYGDVPL+
Sbjct: 3   QEAVEESGEKISKKAAKKAAAKAEKLRR----EATAKAAAASLEDEDDPLASNYGDVPLE 58

Query: 71  ELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGR-----------------R 113
           ELQS            V+GREWT+V  L   L   EVLIRGR                  
Sbjct: 59  ELQS-----------KVTGREWTDVSDLGEELAGSEVLIRGRVHTIRGKGKSAFLVLRQS 107

Query: 114 VSTVQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGATQQVEVQIKKLY 173
             TVQC+  V   +VSK MV++ + LS ES+VDV GVVSVP   +KG TQQVE+Q++K+Y
Sbjct: 108 GFTVQCVVFVSEVTVSKGMVKYAKQLSRESVVDVEGVVSVPKKPVKGTTQQVEIQVRKIY 167

Query: 174 CVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRI 232
           CVS+A  T P  +EDA+RSE+EIEKA + G QL RV QDTRLNNRV+D+RT ANQ IFRI
Sbjct: 168 CVSKALATLPFNVEDAARSESEIEKALQTGEQLVRVGQDTRLNNRVLDLRTPANQAIFRI 227

Query: 233 QSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSI 292
           QSQV N+FR+FLLS+ FVEIHTPKLIAG+SEGGSAVFRLDYKGQ ACLAQSPQLHKQM+I
Sbjct: 228 QSQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRLDYKGQPACLAQSPQLHKQMAI 287

Query: 293 CGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLN 352
           CGDF RVFE GPVFRAEDS+THRHLCEFTGLD+EMEIK+HYSEV+D+VD LFV IFD LN
Sbjct: 288 CGDFRRVFEIGPVFRAEDSFTHRHLCEFTGLDLEMEIKEHYSEVLDVVDELFVAIFDGLN 347

Query: 353 NVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQ 412
             CKKELEA+ +QYPFEPLKY PKTLRLTF EG+QMLK+AGVE+DPLGDLNTESERKLGQ
Sbjct: 348 ERCKKELEAIREQYPFEPLKYLPKTLRLTFAEGIQMLKEAGVEVDPLGDLNTESERKLGQ 407

Query: 413 LVLEK 417
           LV EK
Sbjct: 408 LVKEK 412

Length = 530
>gnl|CDD|173592 PTZ00401, PTZ00401, aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|238399 cd00776, AsxRS_core, Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>gnl|CDD|235354 PRK05159, aspC, aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|129550 TIGR00458, aspS_nondisc, nondiscriminating aspartyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|223096 COG0017, AsnS, Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|215753 pfam00152, tRNA-synt_2, tRNA synthetases class II (D, K and N) Back     alignment and domain information
>gnl|CDD|235176 PRK03932, asnC, asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|239815 cd04320, AspRS_cyto_N, AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>gnl|CDD|223251 COG0173, AspS, Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238358 cd00669, Asp_Lys_Asn_RS_core, Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>gnl|CDD|232982 TIGR00457, asnS, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|235808 PRK06462, PRK06462, asparagine synthetase A; Reviewed Back     alignment and domain information
>gnl|CDD|211576 TIGR00459, aspS_bact, aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>gnl|CDD|234775 PRK00476, aspS, aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>gnl|CDD|238400 cd00777, AspRS_core, Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>gnl|CDD|105955 PRK12820, PRK12820, bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>gnl|CDD|215490 PLN02903, PLN02903, aminoacyl-tRNA ligase Back     alignment and domain information
>gnl|CDD|238398 cd00775, LysRS_core, Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>gnl|CDD|232998 TIGR00499, lysS_bact, lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>gnl|CDD|224111 COG1190, LysU, Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|171504 PRK12445, PRK12445, lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|177867 PLN02221, PLN02221, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215278 PLN02502, PLN02502, lysyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>gnl|CDD|185588 PTZ00385, PTZ00385, lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>gnl|CDD|240414 PTZ00425, PTZ00425, asparagine-tRNA ligase; Provisional Back     alignment and domain information
>gnl|CDD|239766 cd04100, Asp_Lys_Asn_RS_N, Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) Back     alignment and domain information
>gnl|CDD|234778 PRK00484, lysS, lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>gnl|CDD|178213 PLN02603, PLN02603, asparaginyl-tRNA synthetase Back     alignment and domain information
>gnl|CDD|215291 PLN02532, PLN02532, asparagine-tRNA synthetase Back     alignment and domain information
>gnl|CDD|236555 PRK09537, pylS, pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 417
KOG0556 533 consensus Aspartyl-tRNA synthetase [Translation, r 100.0
PLN02850 530 aspartate-tRNA ligase 100.0
PTZ00401 550 aspartyl-tRNA synthetase; Provisional 100.0
KOG1885 560 consensus Lysyl-tRNA synthetase (class II) [Transl 100.0
COG0017 435 AsnS Aspartyl/asparaginyl-tRNA synthetases [Transl 100.0
PLN02502 553 lysyl-tRNA synthetase 100.0
PRK05159 437 aspC aspartyl-tRNA synthetase; Provisional 100.0
TIGR00458 428 aspS_arch aspartyl-tRNA synthetase, archaeal type. 100.0
PLN02221 572 asparaginyl-tRNA synthetase 100.0
TIGR00499 496 lysS_bact lysyl-tRNA synthetase, eukaryotic and no 100.0
PRK03932 450 asnC asparaginyl-tRNA synthetase; Validated 100.0
PLN02532 633 asparagine-tRNA synthetase 100.0
TIGR00457 453 asnS asparaginyl-tRNA synthetase. In a multiple se 100.0
PRK12445 505 lysyl-tRNA synthetase; Reviewed 100.0
PRK00484 491 lysS lysyl-tRNA synthetase; Reviewed 100.0
PTZ00417 585 lysine-tRNA ligase; Provisional 100.0
PLN02603 565 asparaginyl-tRNA synthetase 100.0
PTZ00425 586 asparagine-tRNA ligase; Provisional 100.0
PTZ00385 659 lysyl-tRNA synthetase; Provisional 100.0
PRK02983 1094 lysS lysyl-tRNA synthetase; Provisional 100.0
PLN02903 652 aminoacyl-tRNA ligase 100.0
COG1190 502 LysU Lysyl-tRNA synthetase (class II) [Translation 100.0
TIGR00459 583 aspS_bact aspartyl-tRNA synthetase, bacterial type 100.0
PRK00476 588 aspS aspartyl-tRNA synthetase; Validated 100.0
PRK12820 706 bifunctional aspartyl-tRNA synthetase/aspartyl/glu 100.0
COG0173 585 AspS Aspartyl-tRNA synthetase [Translation, riboso 100.0
KOG0555 545 consensus Asparaginyl-tRNA synthetase [Translation 100.0
KOG0554 446 consensus Asparaginyl-tRNA synthetase (mitochondri 100.0
cd00776 322 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class 100.0
PRK06462 335 asparagine synthetase A; Reviewed 100.0
PF00152 335 tRNA-synt_2: tRNA synthetases class II (D, K and N 100.0
KOG2411 628 consensus Aspartyl-tRNA synthetase, mitochondrial 100.0
TIGR00462 304 genX lysyl-tRNA synthetase-like protein GenX. Many 100.0
cd00775 329 LysRS_core Lys_tRNA synthetase (LysRS) class II co 100.0
cd00669269 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase cl 100.0
cd00777 280 AspRS_core Asp tRNA synthetase (aspRS) class II co 100.0
PRK09350 306 poxB regulator PoxA; Provisional 100.0
COG2269 322 Truncated, possibly inactive, lysyl-tRNA synthetas 99.94
cd04317135 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticod 99.67
cd04322108 LysRS_N LysRS_N: N-terminal, anticodon recognition 99.53
PRK09537417 pylS pyrolysyl-tRNA synthetase; Reviewed 99.44
cd04319103 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticod 99.28
cd04316108 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, a 99.27
cd04320102 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon r 99.27
cd00768211 class_II_aaRS-like_core Class II tRNA amino-acyl s 99.18
TIGR02367453 PylS pyrrolysyl-tRNA synthetase. PylS is the archa 98.92
cd0410085 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, ant 98.72
cd00496218 PheRS_alpha_core Phenylalanyl-tRNA synthetase (Phe 98.58
cd0432384 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, a 98.54
PF01409247 tRNA-synt_2d: tRNA synthetases class II core domai 98.44
cd00773261 HisRS-like_core Class II Histidinyl-tRNA synthetas 98.4
PF00587173 tRNA-synt_2b: tRNA synthetase class II core domain 98.36
cd0432186 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, a 98.32
TIGR00468294 pheS phenylalanyl-tRNA synthetase, alpha subunit. 98.28
PRK00488339 pheS phenylalanyl-tRNA synthetase subunit alpha; V 98.24
cd0431882 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticod 98.24
PRK00037 412 hisS histidyl-tRNA synthetase; Reviewed 98.19
cd00670235 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_t 98.16
cd00778261 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) 98.08
PRK04172489 pheS phenylalanyl-tRNA synthetase subunit alpha; P 98.04
TIGR00442 397 hisS histidyl-tRNA synthetase. This model finds a 98.04
cd00771298 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class 98.01
cd00772264 ProRS_core Prolyl-tRNA synthetase (ProRS) class II 97.94
TIGR00409 568 proS_fam_II prolyl-tRNA synthetase, family II. Pro 97.9
PTZ00326494 phenylalanyl-tRNA synthetase alpha chain; Provisio 97.89
cd00779255 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) cla 97.88
PLN02853492 Probable phenylalanyl-tRNA synthetase alpha chain 97.86
TIGR00443 314 hisZ_biosyn_reg ATP phosphoribosyltransferase, reg 97.86
PRK09194 565 prolyl-tRNA synthetase; Provisional 97.85
PF13393311 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI 97.81
COG0016335 PheS Phenylalanyl-tRNA synthetase alpha subunit [T 97.81
PRK12293281 hisZ ATP phosphoribosyltransferase regulatory subu 97.79
cd00774254 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-lik 97.77
PLN02908 686 threonyl-tRNA synthetase 97.76
cd00770297 SerRS_core Seryl-tRNA synthetase (SerRS) class II 97.75
PLN02788 402 phenylalanine-tRNA synthetase 97.75
PRK12292 391 hisZ ATP phosphoribosyltransferase regulatory subu 97.72
PRK12305 575 thrS threonyl-tRNA synthetase; Reviewed 97.68
TIGR00418 563 thrS threonyl-tRNA synthetase. This model represen 97.66
PRK00413 638 thrS threonyl-tRNA synthetase; Reviewed 97.62
PRK12420 423 histidyl-tRNA synthetase; Provisional 97.6
TIGR00408 472 proS_fam_I prolyl-tRNA synthetase, family I. Proly 97.59
TIGR00414418 serS seryl-tRNA synthetase. This model represents 97.59
PRK12444 639 threonyl-tRNA synthetase; Reviewed 97.57
CHL00201 430 syh histidine-tRNA synthetase; Provisional 97.56
PLN02972 763 Histidyl-tRNA synthetase 97.53
PRK05431425 seryl-tRNA synthetase; Provisional 97.53
PRK14799 545 thrS threonyl-tRNA synthetase; Provisional 97.51
PRK08661 477 prolyl-tRNA synthetase; Provisional 97.51
PLN02530 487 histidine-tRNA ligase 97.48
PRK03991 613 threonyl-tRNA synthetase; Validated 97.43
PRK12421 392 ATP phosphoribosyltransferase regulatory subunit; 97.42
PRK12325 439 prolyl-tRNA synthetase; Provisional 97.37
PLN02837 614 threonine-tRNA ligase 97.29
PLN02678448 seryl-tRNA synthetase 97.22
PRK12295 373 hisZ ATP phosphoribosyltransferase regulatory subu 97.18
PF0133675 tRNA_anti-codon: OB-fold nucleic acid binding doma 96.86
COG0124 429 HisS Histidyl-tRNA synthetase [Translation, riboso 96.74
KOG2784483 consensus Phenylalanyl-tRNA synthetase, beta subun 96.62
PLN02320502 seryl-tRNA synthetase 96.57
PRK04173 456 glycyl-tRNA synthetase; Provisional 96.49
PRK12294272 hisZ ATP phosphoribosyltransferase regulatory subu 96.44
COG0442 500 ProS Prolyl-tRNA synthetase [Translation, ribosoma 96.33
TIGR00470 533 sepS O-phosphoseryl-tRNA(Cys) synthetase. This fam 96.22
TIGR00415520 serS_MJ seryl-tRNA synthetase, Methanococcus janna 95.85
PRK00960517 seryl-tRNA synthetase; Provisional 95.69
COG0172429 SerS Seryl-tRNA synthetase [Translation, ribosomal 95.65
COG0423 558 GRS1 Glycyl-tRNA synthetase (class II) [Translatio 94.54
KOG2324 457 consensus Prolyl-tRNA synthetase [Translation, rib 94.52
PRK09616552 pheT phenylalanyl-tRNA synthetase subunit beta; Re 94.44
COG0441 589 ThrS Threonyl-tRNA synthetase [Translation, riboso 93.51
TIGR00389 551 glyS_dimeric glycyl-tRNA synthetase, dimeric type. 93.05
TIGR00469 460 pheS_mito phenylalanyl-tRNA synthetase, mitochondr 92.48
KOG1936 518 consensus Histidyl-tRNA synthetase [Translation, r 92.44
cd00769198 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheR 92.03
COG3705 390 HisZ ATP phosphoribosyltransferase involved in his 91.36
PF03590244 AsnA: Aspartate-ammonia ligase; InterPro: IPR00461 87.73
KOG2509455 consensus Seryl-tRNA synthetase [Translation, ribo 87.31
KOG1035 1351 consensus eIF-2alpha kinase GCN2 [Translation, rib 84.05
>KOG0556 consensus Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=2.6e-100  Score=752.81  Aligned_cols=391  Identities=55%  Similarity=0.809  Sum_probs=365.4

Q ss_pred             cccCCCCccCChhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCcCCccccchhhhhccCCCCCCCccccccCcc
Q 014856           12 EEVDSSSQSISKKAAKKEAAKKAKEERRKEAEAAASAASALSIEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGRE   91 (417)
Q Consensus        12 ~~~~~~~~~~sk~~lkk~~k~~~k~~kka~~~~~~~~~~~~~~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~   91 (417)
                      ...+++|+ +|||++||.+|+.+|.++|+|++..+.  ++..++++|.++++||++++.++|+.            ++++
T Consensus         5 ~~~gE~gk-~SKK~~kk~a~~~eK~~~k~e~~~~~~--~a~~~~~ed~~~~~yg~~~l~~s~~~------------~~~~   69 (533)
T KOG0556|consen    5 VALGEDGK-LSKKALKKLAKKLEKLRKKQEREETAA--KAREAEAEDYAKERYGDLSLIQSQSK------------EGRE   69 (533)
T ss_pred             hhcccccc-ccHHHHHHHHHHHHHHHhhhhhhhhhh--hhhhhhhhhHHhhhcCcccccccccc------------cccc
Confidence            34466777 999999999999999999988664222  22235667889999999999988873            7889


Q ss_pred             eeeecccccccCCcEEEEEee-----------------cCceEEEEEeeCCC-CccHHHHHHHHcCCCCcEEEEEEEEec
Q 014856           92 WTEVGALNGSLKDQEVLIRGR-----------------RVSTVQCLATVKPD-SVSKEMVRFVRSLSNESIVDVIGVVSV  153 (417)
Q Consensus        92 ~~~i~~l~~~~~G~~V~vrgr-----------------~~~~iQ~v~~~~~~-~~~~~~~~~~~~l~~es~V~V~G~v~~  153 (417)
                      |+.+.+|+.+.+|+.||||||                 ++.+|||++..+.+ .++++|++|+..|++||+|+|.|+|++
T Consensus        70 ~~~v~dl~~~~~~~~V~vRgrVhtsr~~GK~~FlvLRq~~~tVQ~~~~~~~~~~isk~Mvkf~~~is~ESiV~v~g~v~k  149 (533)
T KOG0556|consen   70 LTDVSDLDESNDGSEVLVRGRVHTSRLKGKLCFLVLRQQGSTVQCLVAVNEDGTISKQMVKFAGSISKESIVDVRGVVVK  149 (533)
T ss_pred             eeehhhhhhhcCCceEEEEEEEeeccccceEEEEEEeccCceEEEEEEcCCCchHHHHHHHHHhhcCcceEEEEEEEEec
Confidence            999999999999999999999                 78899999988655 389999999999999999999999999


Q ss_pred             CCccCCCCc-eeEEEEEeEEEEeecC-CCCCcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHH
Q 014856          154 PDVEIKGAT-QQVEVQIKKLYCVSRA-AKTPITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFR  231 (417)
Q Consensus       154 ~~~~~~~~t-~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~  231 (417)
                      ++.+++||| +.+||++.+|+|||.+ +.||++++|+++++.+.+++...+..+.++++|||||||+||||||++|+|||
T Consensus       150 ~~~~i~scT~qdvEi~v~~iyviS~a~~~LPl~veDasrse~~eE~a~~~~~~~~~Vn~dtRLdnRvlDLRtptnqAiFr  229 (533)
T KOG0556|consen  150 VKEPIKSCTVQDVEIHVRKIYVISIALPNLPLQVEDASRSEPDEEKAAEPESTLARVNLDTRLDNRVLDLRTPTNQAIFR  229 (533)
T ss_pred             CCCcccccccceeEEEEEEEEEEecccccCCeeehhhcccccchhhhcCCccccceecccccccceeeecccccchheee
Confidence            999999998 5699999999999999 99999999999988766666666667889999999999999999999999999


Q ss_pred             HHhHHHHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCC
Q 014856          232 IQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDS  311 (417)
Q Consensus       232 ~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s  311 (417)
                      +++.||.+||+||..+||+|||||+|+++++||||++|.|+||+.++||+|||||||||+|||||+|||+||||||||+|
T Consensus       230 iq~gvc~~FRe~L~~kgF~EIhTpKli~asSEGGanvF~v~Yfk~~A~LAQSPQLyKQMaI~gdf~rVyeIGpVfRAEdS  309 (533)
T KOG0556|consen  230 IQAGVCFAFREYLRSKGFVEIHTPKLIGASSEGGANVFRVSYFKQKAYLAQSPQLYKQMAICGDFERVYEIGPVFRAEDS  309 (533)
T ss_pred             hHHHHHHHHHHHHHhcCcceecccccccccCCCCceeEEEEeccCcchhhcChHHHHHHHHhcchhheeeecceeecccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHH
Q 014856          312 YTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKD  391 (417)
Q Consensus       312 ~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~  391 (417)
                      ||+|||+||++||+||+|..||||+|+++.+|+.+||+.|.++|.++|+.++.+||+++++|.+|..|++|.||++||++
T Consensus       310 nthRhltEFvGLD~EMaf~~hYhEVm~~i~~lfv~IF~~l~ery~~Eie~Vr~qyp~e~fkf~~~~lrl~~~e~v~mLre  389 (533)
T KOG0556|consen  310 NTHRHLTEFVGLDLEMAFNEHYHEVMDTIGELFVFIFKGLRERYAKEIETVRKQYPFEPFKFLEPPLRLTFKEGVAMLRE  389 (533)
T ss_pred             chhhhhHHhhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccCCCceEeehHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCcHHHHHHHHHhhcC
Q 014856          392 AGVEIDPLGDLNTESERKLGQLVLEK  417 (417)
Q Consensus       392 ~g~~~~~~~dl~te~E~~L~~~vkek  417 (417)
                      +|+++.+.+||+|+.||+||++|+||
T Consensus       390 aGvE~g~~dDlsTe~Ek~LG~lV~ek  415 (533)
T KOG0556|consen  390 AGVEMGDEDDLSTESEKKLGQLVREK  415 (533)
T ss_pred             cCcccCCccccCChhHHHHHHHHHHH
Confidence            99999999999999999999999986

>PLN02850 aspartate-tRNA ligase Back     alignment and domain information
>PTZ00401 aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>KOG1885 consensus Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02502 lysyl-tRNA synthetase Back     alignment and domain information
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type Back     alignment and domain information
>PLN02221 asparaginyl-tRNA synthetase Back     alignment and domain information
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial Back     alignment and domain information
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated Back     alignment and domain information
>PLN02532 asparagine-tRNA synthetase Back     alignment and domain information
>TIGR00457 asnS asparaginyl-tRNA synthetase Back     alignment and domain information
>PRK12445 lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PTZ00417 lysine-tRNA ligase; Provisional Back     alignment and domain information
>PLN02603 asparaginyl-tRNA synthetase Back     alignment and domain information
>PTZ00425 asparagine-tRNA ligase; Provisional Back     alignment and domain information
>PTZ00385 lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK02983 lysS lysyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02903 aminoacyl-tRNA ligase Back     alignment and domain information
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00459 aspS_bact aspartyl-tRNA synthetase, bacterial type Back     alignment and domain information
>PRK00476 aspS aspartyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12820 bifunctional aspartyl-tRNA synthetase/aspartyl/glutamyl-tRNA amidotransferase subunit C; Provisional Back     alignment and domain information
>COG0173 AspS Aspartyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0555 consensus Asparaginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG0554 consensus Asparaginyl-tRNA synthetase (mitochondrial) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain Back     alignment and domain information
>PRK06462 asparagine synthetase A; Reviewed Back     alignment and domain information
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>KOG2411 consensus Aspartyl-tRNA synthetase, mitochondrial [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX Back     alignment and domain information
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain Back     alignment and domain information
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain Back     alignment and domain information
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain Back     alignment and domain information
>PRK09350 poxB regulator PoxA; Provisional Back     alignment and domain information
>COG2269 Truncated, possibly inactive, lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd04317 EcAspRS_like_N EcAspRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli aspartyl-tRNA synthetase (AspRS), the human mitochondrial (mt) AspRS-2, the discriminating (D) Thermus thermophilus AspRS-1, and the nondiscriminating (ND) Helicobacter pylori AspRS Back     alignment and domain information
>cd04322 LysRS_N LysRS_N: N-terminal, anticodon recognition domain of lysyl-tRNA synthetases (LysRS) Back     alignment and domain information
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd04319 PhAsnRS_like_N PhAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Pyrococcus horikoshii AsnRS asparaginyl-tRNA synthetase (AsnRS) Back     alignment and domain information
>cd04316 ND_PkAspRS_like_N ND_PkAspRS_like_N: N-terminal, anticodon recognition domain of the type found in the homodimeric non-discriminating (ND) Pyrococcus kodakaraensis aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>cd04320 AspRS_cyto_N AspRS_cyto_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae and human cytoplasmic aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain Back     alignment and domain information
>TIGR02367 PylS pyrrolysyl-tRNA synthetase Back     alignment and domain information
>cd04100 Asp_Lys_Asn_RS_N Asp_Lys_Asn_RS_N: N-terminal, anticodon recognition domain of class 2b aminoacyl-tRNA synthetases (aaRSs) Back     alignment and domain information
>cd00496 PheRS_alpha_core Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain Back     alignment and domain information
>cd04323 AsnRS_cyto_like_N AsnRS_cyto_like_N: N-terminal, anticodon recognition domain of the type found in human and Saccharomyces cerevisiae cytoplasmic asparaginyl-tRNA synthetase (AsnRS), in Brugia malayai AsnRs and, in various putative bacterial AsnRSs Back     alignment and domain information
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6 Back     alignment and domain information
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain Back     alignment and domain information
>PF00587 tRNA-synt_2b: tRNA synthetase class II core domain (G, H, P, S and T) This Prosite entry contains all class II enzymes Back     alignment and domain information
>cd04321 ScAspRS_mt_like_N ScAspRS_mt_like_N: N-terminal, anticodon recognition domain of the type found in Saccharomyces cerevisiae mitochondrial (mt) aspartyl-tRNA synthetase (AspRS) Back     alignment and domain information
>TIGR00468 pheS phenylalanyl-tRNA synthetase, alpha subunit Back     alignment and domain information
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated Back     alignment and domain information
>cd04318 EcAsnRS_like_N EcAsnRS_like_N: N-terminal, anticodon recognition domain of the type found in Escherichia coli asparaginyl-tRNA synthetase (AsnRS) and, in Arabidopsis thaliana and Saccharomyces cerevisiae mitochondrial (mt) AsnRS Back     alignment and domain information
>PRK00037 hisS histidyl-tRNA synthetase; Reviewed Back     alignment and domain information
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain Back     alignment and domain information
>cd00778 ProRS_core_arch_euk Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PRK04172 pheS phenylalanyl-tRNA synthetase subunit alpha; Provisional Back     alignment and domain information
>TIGR00442 hisS histidyl-tRNA synthetase Back     alignment and domain information
>cd00771 ThrRS_core Threonyl-tRNA synthetase (ThrRS) class II core catalytic domain Back     alignment and domain information
>cd00772 ProRS_core Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>TIGR00409 proS_fam_II prolyl-tRNA synthetase, family II Back     alignment and domain information
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional Back     alignment and domain information
>cd00779 ProRS_core_prok Prolyl-tRNA synthetase (ProRS) class II core catalytic domain Back     alignment and domain information
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain Back     alignment and domain information
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit Back     alignment and domain information
>PRK09194 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A Back     alignment and domain information
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain Back     alignment and domain information
>PLN02908 threonyl-tRNA synthetase Back     alignment and domain information
>cd00770 SerRS_core Seryl-tRNA synthetase (SerRS) class II core catalytic domain Back     alignment and domain information
>PLN02788 phenylalanine-tRNA synthetase Back     alignment and domain information
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12305 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>TIGR00418 thrS threonyl-tRNA synthetase Back     alignment and domain information
>PRK00413 thrS threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>PRK12420 histidyl-tRNA synthetase; Provisional Back     alignment and domain information
>TIGR00408 proS_fam_I prolyl-tRNA synthetase, family I Back     alignment and domain information
>TIGR00414 serS seryl-tRNA synthetase Back     alignment and domain information
>PRK12444 threonyl-tRNA synthetase; Reviewed Back     alignment and domain information
>CHL00201 syh histidine-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02972 Histidyl-tRNA synthetase Back     alignment and domain information
>PRK05431 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK14799 thrS threonyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK08661 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02530 histidine-tRNA ligase Back     alignment and domain information
>PRK03991 threonyl-tRNA synthetase; Validated Back     alignment and domain information
>PRK12421 ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PRK12325 prolyl-tRNA synthetase; Provisional Back     alignment and domain information
>PLN02837 threonine-tRNA ligase Back     alignment and domain information
>PLN02678 seryl-tRNA synthetase Back     alignment and domain information
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>PF01336 tRNA_anti-codon: OB-fold nucleic acid binding domain; InterPro: IPR004365 The OB-fold (oligonucleotide/oligosaccharide-binding fold) is found in all three kingdoms and its common architecture presents a binding face that has adapted to bind different ligands Back     alignment and domain information
>COG0124 HisS Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2784 consensus Phenylalanyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PLN02320 seryl-tRNA synthetase Back     alignment and domain information
>PRK04173 glycyl-tRNA synthetase; Provisional Back     alignment and domain information
>PRK12294 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional Back     alignment and domain information
>COG0442 ProS Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00470 sepS O-phosphoseryl-tRNA(Cys) synthetase Back     alignment and domain information
>TIGR00415 serS_MJ seryl-tRNA synthetase, Methanococcus jannaschii family Back     alignment and domain information
>PRK00960 seryl-tRNA synthetase; Provisional Back     alignment and domain information
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>COG0423 GRS1 Glycyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG2324 consensus Prolyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK09616 pheT phenylalanyl-tRNA synthetase subunit beta; Reviewed Back     alignment and domain information
>COG0441 ThrS Threonyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00389 glyS_dimeric glycyl-tRNA synthetase, dimeric type Back     alignment and domain information
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial Back     alignment and domain information
>KOG1936 consensus Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd00769 PheRS_beta_core Phenylalanyl-tRNA synthetase (PheRS) beta chain core domain Back     alignment and domain information
>COG3705 HisZ ATP phosphoribosyltransferase involved in histidine biosynthesis [Amino acid transport and metabolism] Back     alignment and domain information
>PF03590 AsnA: Aspartate-ammonia ligase; InterPro: IPR004618 Aspartate--ammonia ligase (asparagine synthetase) 6 Back     alignment and domain information
>KOG2509 consensus Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1035 consensus eIF-2alpha kinase GCN2 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
1eov_A 487 Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.1 4e-75
1asy_A 490 Class Ii Aminoacyl Transfer Rna Synthetases: Crysta 4e-75
3i7f_A 548 Aspartyl Trna Synthetase From Entamoeba Histolytica 4e-67
3nel_A 438 Aspartyl-Trna Synthetase Complexed With Aspartic Ac 4e-35
1b8a_A 438 Aspartyl-trna Synthetase Length = 438 8e-35
1wyd_A 429 Crystal Structure Of Aspartyl-Trna Synthetase From 1e-33
1n9w_A 422 Crystal Structure Of The Non-Discriminating And Arc 3e-29
1x54_A 434 Crystal Structure Of Asparaginyl-trna Synthetase Fr 1e-19
3m4p_A 456 Entamoeba Histolytica Asparaginyl-Trna Synthetase ( 5e-18
2xgt_A 435 Asparaginyl-Trna Synthetase From Brugia Malayi Comp 4e-12
2xti_A 437 Asparaginyl-Trna Synthetase From Brugia Malayi Comp 5e-12
1eqr_A 590 Crystal Structure Of Free Aspartyl-Trna Synthetase 1e-10
1c0a_A 585 Crystal Structure Of The E. Coli Aspartyl-Trna Synt 1e-10
1efw_A 580 Crystal Structure Of Aspartyl-Trna Synthetase From 2e-10
4ah6_A 617 Human Mitochondrial Aspartyl-Trna Synthetase Length 3e-10
1bbu_A 504 Lysyl-Trna Synthetase (Lyss) Complexed With Lysine 7e-10
1lyl_A 504 Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexe 1e-08
4ex5_A 529 Crystal Structure Of Lysyl-Trna Synthetase Lysrs Fr 8e-07
3bju_A 521 Crystal Structure Of Tetrameric Form Of Human Lysyl 7e-05
4dpg_A 513 Crystal Structure Of Human Lysrs: P38/aimp2 Complex 7e-05
3e9h_A 493 Lysyl-Trna Synthetase From Bacillus Stearothermophi 1e-04
>pdb|1EOV|A Chain A, Free Aspartyl-Trna Synthetase (Asprs) (E.C. 6.1.1.12) From Yeast Length = 487 Back     alignment and structure 
Iteration: 1

 Score =  278 bits (711), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 168/379 (44%), Positives = 223/379 (58%), Gaps = 37/379 (9%)
Query: 62  NNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGRRVSTVQCLA 121
           +NYG +PL  +QS +  +TG+       +    V        D+EVL R R  +T Q  A
Sbjct: 3   DNYGKLPL--IQSRDSDRTGQ-------KRVKFVDLDEAKDSDKEVLFRARVHNTRQQGA 53
Query: 122 TV-------------------KPDSVSKEMVRFVRSLSNEXXXXXXXXXXXXXXEIKGAT 162
           T+                   K  ++SK MV++  SL+ E               IK AT
Sbjct: 54  TLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKSAT 113
Query: 163 -QQVEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVID 220
            Q +E+ I K+Y +S   +  PI +EDASRSEAE E A      LP VN DTRL+ RVID
Sbjct: 114 VQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAG-----LPVVNLDTRLDYRVID 168
Query: 221 IRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACL 280
           +RT+ NQ IFRIQ+ V  +FR++L ++ F E+HTPKL+   SEGGS+VF + Y    A L
Sbjct: 169 LRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYL 228
Query: 281 AQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIV 340
           AQSPQ +KQ  I  DF RV+E GPVFRAE+S THRH+ EFTGLD+EM  ++HY EV+D +
Sbjct: 229 AQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTL 288
Query: 341 DCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDP 398
             LFV IF  L      E+E V KQYP E  K     K +RLT++EG++ML+ AG EI  
Sbjct: 289 SELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGD 348
Query: 399 LGDLNTESERKLGQLVLEK 417
             DL+TE+E+ LG+LV +K
Sbjct: 349 FEDLSTENEKFLGKLVRDK 367
>pdb|1ASY|A Chain A, Class Ii Aminoacyl Transfer Rna Synthetases: Crystal Structure Of Yeast Aspartyl-Trna Synthetase Complexed With Trna Asp Length = 490 Back     alignment and structure
>pdb|3I7F|A Chain A, Aspartyl Trna Synthetase From Entamoeba Histolytica Length = 548 Back     alignment and structure
>pdb|3NEL|A Chain A, Aspartyl-Trna Synthetase Complexed With Aspartic Acid Length = 438 Back     alignment and structure
>pdb|1B8A|A Chain A, Aspartyl-trna Synthetase Length = 438 Back     alignment and structure
>pdb|1WYD|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Sulfolobus Tokodaii Length = 429 Back     alignment and structure
>pdb|1N9W|A Chain A, Crystal Structure Of The Non-Discriminating And Archaeal- Type Aspartyl-Trna Synthetase From Thermus Thermophilus Length = 422 Back     alignment and structure
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From Pyrococcus Horikoshii Complexed With Asparaginyl-adenylate Length = 434 Back     alignment and structure
>pdb|3M4P|A Chain A, Entamoeba Histolytica Asparaginyl-Trna Synthetase (Asnrs) In Complex With Asparaginyl-Adenylate Length = 456 Back     alignment and structure
>pdb|2XGT|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With The Sulphamoyl Analogue Of Asparaginyl-Adenylate Length = 435 Back     alignment and structure
>pdb|2XTI|A Chain A, Asparaginyl-Trna Synthetase From Brugia Malayi Complexed With Atp:mg And L-Asp-Beta-Noh Adenylate:ppi:mg Length = 437 Back     alignment and structure
>pdb|1EQR|A Chain A, Crystal Structure Of Free Aspartyl-Trna Synthetase From Escherichia Coli Length = 590 Back     alignment and structure
>pdb|1C0A|A Chain A, Crystal Structure Of The E. Coli Aspartyl-Trna Synthetase : Trnaasp : Aspartyl-Adenylate Complex Length = 585 Back     alignment and structure
>pdb|1EFW|A Chain A, Crystal Structure Of Aspartyl-Trna Synthetase From Thermus Thermophilus Complexed To Trnaasp From Escherichia Coli Length = 580 Back     alignment and structure
>pdb|4AH6|A Chain A, Human Mitochondrial Aspartyl-Trna Synthetase Length = 617 Back     alignment and structure
>pdb|1BBU|A Chain A, Lysyl-Trna Synthetase (Lyss) Complexed With Lysine Length = 504 Back     alignment and structure
>pdb|1LYL|A Chain A, Lysyl-Trna Synthetase (Lysu) (E.C.6.1.1.6) Complexed With Lysine Length = 504 Back     alignment and structure
>pdb|4EX5|A Chain A, Crystal Structure Of Lysyl-Trna Synthetase Lysrs From Burkholderia Thailandensis Bound To Lysine Length = 529 Back     alignment and structure
>pdb|3BJU|A Chain A, Crystal Structure Of Tetrameric Form Of Human Lysyl-Trna Synthetase Length = 521 Back     alignment and structure
>pdb|4DPG|A Chain A, Crystal Structure Of Human Lysrs: P38/aimp2 Complex I Length = 513 Back     alignment and structure
>pdb|3E9H|A Chain A, Lysyl-Trna Synthetase From Bacillus Stearothermophilus Complexed With L-Lysylsulfamoyl Adenosine Length = 493 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query417
1eov_A 487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 1e-133
3i7f_A 548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 1e-129
3nem_A 438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 1e-123
1wyd_A 429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 1e-108
1n9w_A 422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 1e-105
1x54_A 434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 1e-61
2xgt_A 435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 1e-50
3m4p_A 456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 3e-50
1nnh_A 294 Asparaginyl-tRNA synthetase-related peptide; struc 3e-44
1l0w_A 580 Aspartyl-tRNA synthetase; space-grown crystal, dim 4e-23
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 9e-19
3a5y_A 345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 7e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-08
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
3bju_A 521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 4e-08
3a74_A 493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 1e-06
1e1o_A 504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 3e-06
4ex5_A 529 Lysine--tRNA ligase; structural genomics, niaid, n 1e-05
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 1e-04
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Length = 487 Back     alignment and structure
 Score =  390 bits (1005), Expect = e-133
 Identities = 169/381 (44%), Positives = 227/381 (59%), Gaps = 39/381 (10%)

Query: 61  ANNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALN-GSLKDQEVLIRGR------- 112
            +NYG +PL + +  +            G++  +   L+     D+EVL R R       
Sbjct: 2   KDNYGKLPLIQSRDSDRT----------GQKRVKFVDLDEAKDSDKEVLFRARVHNTRQQ 51

Query: 113 -----------RVSTVQCLATVK-PDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKG 160
                      + S +Q L       ++SK MV++  SL+ ESIV V G+V   D  IK 
Sbjct: 52  GATLAFLTLRQQASLIQGLVKANKEGTISKNMVKWAGSLNLESIVLVRGIVKKVDEPIKS 111

Query: 161 ATQQ-VEVQIKKLYCVSRAAKT-PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRV 218
           AT Q +E+ I K+Y +S   +  PI +EDASRSEAE E A       P VN DTRL+ RV
Sbjct: 112 ATVQNLEIHITKIYTISETPEALPILLEDASRSEAEAEAAGL-----PVVNLDTRLDYRV 166

Query: 219 IDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSA 278
           ID+RT+ NQ IFRIQ+ V  +FR++L ++ F E+HTPKL+   SEGGS+VF + Y    A
Sbjct: 167 IDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKA 226

Query: 279 CLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMD 338
            LAQSPQ +KQ  I  DF RV+E GPVFRAE+S THRH+ EFTGLD+EM  ++HY EV+D
Sbjct: 227 YLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLD 286

Query: 339 IVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKY--KPKTLRLTFEEGVQMLKDAGVEI 396
            +  LFV IF  L      E+E V KQYP E  K     K +RLT++EG++ML+ AG EI
Sbjct: 287 TLSELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEI 346

Query: 397 DPLGDLNTESERKLGQLVLEK 417
               DL+TE+E+ LG+LV +K
Sbjct: 347 GDFEDLSTENEKFLGKLVRDK 367
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Length = 548 Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Length = 438 Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Length = 429 Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Length = 422 Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Length = 434 Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Length = 435 Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Length = 456 Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Length = 294 Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Length = 580 Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Length = 585 Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Length = 345 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Length = 521 Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Length = 493 Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Length = 504 Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Length = 529 Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* Length = 290 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
3i7f_A 548 Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-bi 100.0
1eov_A 487 ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA sy 100.0
3nem_A 438 Aspartyl-tRNA synthetase; rossmann fold, OB fold, 100.0
3bju_A 521 Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, 100.0
3m4p_A 456 Ehasnrs, asparaginyl-tRNA synthetase, putative; am 100.0
4ex5_A 529 Lysine--tRNA ligase; structural genomics, niaid, n 100.0
1wyd_A 429 Hypothetical aspartyl-tRNA synthetase; archaea, LI 100.0
2xgt_A 435 Asparaginyl-tRNA synthetase, cytoplasmic; ligase, 100.0
1e1o_A 504 Lysyl-tRNA synthetase, heat inducible; ligase, ami 100.0
1x54_A 434 Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthe 100.0
1n9w_A 422 Aspartyl-tRNA synthetase 2; biosynthetic protein; 100.0
3a74_A 493 Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, 100.0
1l0w_A 580 Aspartyl-tRNA synthetase; space-grown crystal, dim 100.0
1c0a_A 585 Aspartyl tRNA synthetase; protein-RNA complex, lig 100.0
4ah6_A 617 Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo 100.0
3a5y_A 345 GENX, putative lysyl-tRNA synthetase; aminoacyl-tR 100.0
1nnh_A294 Asparaginyl-tRNA synthetase-related peptide; struc 100.0
3qtc_A290 Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthet 99.9
2rhq_A294 Phenylalanyl-tRNA synthetase alpha chain; heterote 99.1
1b7y_A350 Phers, protein (phenylalanyl-tRNA synthetase); enz 98.98
12as_A 330 Asparagine synthetase; ligase, nitrogen fixation; 98.82
3dsq_A288 Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-t 98.78
1evl_A 401 Threonyl-tRNA synthetase; amino acid recognition, 98.26
3pco_A327 Phenylalanyl-tRNA synthetase, alpha subunit; amino 98.23
1qe0_A 420 Histidyl-tRNA synthetase; class II tRNA synthetase 98.22
1z7m_A 344 ATP phosphoribosyltransferase regulatory subunit; 98.19
2i4l_A 458 Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseud 98.18
1wu7_A 434 Histidyl-tRNA synthetase; ligase, structural genom 98.12
2dq3_A425 Seryl-tRNA synthetase; coiled-coil, homodimer, str 98.08
1nyr_A 645 Threonyl-tRNA synthetase 1; ATP, threonine, ligase 98.07
3od1_A 400 ATP phosphoribosyltransferase regulatory subunit; 98.04
1h4v_B 421 Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA 98.02
1hc7_A 477 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 98.01
4e51_A 467 Histidine--tRNA ligase; seattle structural genomic 98.01
1htt_A 423 Histidyl-tRNA synthetase; complex (tRNA synthetase 97.97
3net_A 465 Histidyl-tRNA synthetase; aminoacyl-tRNA synthetas 97.96
1nj8_A 459 Proline-tRNA synthetase, proline--tRNA ligase; cla 97.95
3l4g_A508 Phenylalanyl-tRNA synthetase alpha chain; aminoacy 97.91
3rac_A 373 Histidine-tRNA ligase; structural genomics, PSI-bi 97.9
2j3l_A 572 Prolyl-tRNA synthetase; class II aminoacyl- T synt 97.9
3lc0_A 456 Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-t 97.89
3uh0_A 460 Threonyl-tRNA synthetase, mitochondrial; threonine 97.88
2dq0_A455 Seryl-tRNA synthetase; coiled-coil, homodimer, str 97.83
1qf6_A 642 THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, m 97.83
3qne_A485 Seryl-tRNA synthetase, cytoplasmic; amino acid bio 97.8
1nj1_A 501 PROR, proline-tRNA synthetase, proline--tRNA ligas 97.8
3a32_A 471 Probable threonyl-tRNA synthetase 1; aeropyrum per 97.79
1ses_A421 Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A 97.78
3vbb_A 522 Seryl-tRNA synthetase, cytoplasmic; coiled-coil, l 97.78
3err_A536 Fusion protein of microtubule binding domain from 97.74
1wle_A501 Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bo 97.74
4g84_A 464 Histidine--tRNA ligase, cytoplasmic; synthetase; 2 97.72
3ial_A 518 Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.7
4g85_A 517 Histidine-tRNA ligase, cytoplasmic; synthetase; 3. 97.66
3lss_A484 Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, 97.59
1usy_A275 ATP phosphoribosyltransferase regulatory subunit; 97.58
4hvc_A 519 Bifunctional glutamate/proline--tRNA ligase; ligas 97.57
2cja_A522 Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE 97.46
1ati_A 505 Glycyl-tRNA synthetase; protein biosynthesis, liga 97.28
2du3_A 534 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.08
3mf2_A346 BLL0957 protein; aminoacyl-tRNA synthetase, seryl- 97.05
2du7_A 549 O-phosphoseryl-tRNA synthetase; alpha4 tetramer, l 97.02
3cmq_A 415 Phenylalanyl-tRNA synthetase, mitochondrial; class 96.99
2zt5_A 693 Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP 96.83
2odr_B 648 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.75
2odr_A 665 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.73
2odr_D 685 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.71
2odr_C 701 Phosphoseryl-tRNA synthetase; phosphoserine tRNA s 96.62
3ikl_A 459 DNA polymerase subunit gamma-2, mitochondrial; tra 96.38
1g5h_A 454 Mitochondrial DNA polymerase accessory subunit; in 95.91
3ig2_A213 Phenylalanyl-tRNA synthetase beta chain; phers, MC 95.82
3l4g_B589 Phenylalanyl-tRNA synthetase beta chain; aminoacyl 95.55
2rhq_B795 Phenylalanyl-tRNA synthetase beta chain; heterotet 95.46
3ica_A213 Phenylalanyl-tRNA synthetase beta chain; APC61692. 94.99
1b7y_B785 Phers, protein (phenylalanyl-tRNA synthetase); enz 91.83
3dm3_A105 Replication factor A; probably plays AN essential 85.65
3fhw_A115 Primosomal replication protein N; PRIB BPR162 X-RA 84.37
1txy_A104 Primosomal replication protein N; OB fold, dimer, 84.23
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica} Back     alignment and structure
Probab=100.00  E-value=2e-77  Score=629.04  Aligned_cols=351  Identities=44%  Similarity=0.690  Sum_probs=298.1

Q ss_pred             ccccCCCcCCccccchhhhhccCCCCCCCccccccCcceeeecccccccCCcEEEEEee-----------------cCce
Q 014856           54 IEEEGPLANNYGDVPLQELQSVNDPQTGKWSEAVSGREWTEVGALNGSLKDQEVLIRGR-----------------RVST  116 (417)
Q Consensus        54 ~~~~d~~~~~Yg~~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~G~~V~vrgr-----------------~~~~  116 (417)
                      ++++|.++++||++|+.|+|..          ..++++|+.|++|..++.|+.|+|+||                 ++++
T Consensus        22 ~~~~~~~~~~yg~~~~~~~~~~----------~~~~~~~~~i~~l~~~~~g~~V~v~Gwv~~~R~~gkl~Fi~LrD~~g~   91 (548)
T 3i7f_A           22 KTPELVSGENFKVMPMHQSQPC----------YKTGLKYTEIEELVPAMAEKTVTIRARVQAVRGKGNMVFLFLRKGIYT   91 (548)
T ss_dssp             BCCCCCCCSSEEECCCCSSCGG----------GCCCCCBCCGGGCSGGGTTCEEEEEEEEEEEEECSSEEEEEEEETTEE
T ss_pred             ccccchhhhhcCcCcccccccc----------ccCCCceEEhhhcchhcCCCEEEEEEEEEEEecCCCeEEEEEEECCee
Confidence            4567889999999999987721          236789999999998999999999999                 6779


Q ss_pred             EEEEEeeCCCCccHHHHHHHHcCCCCcEEEEEEEEecCCccCCCC-ceeEEEEEeEEEEeecC-CCCCcccccccchHHH
Q 014856          117 VQCLATVKPDSVSKEMVRFVRSLSNESIVDVIGVVSVPDVEIKGA-TQQVEVQIKKLYCVSRA-AKTPITIEDASRSEAE  194 (417)
Q Consensus       117 iQ~v~~~~~~~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~-t~~~El~~~~i~vls~~-~~lP~~~~~~~~~~~~  194 (417)
                      ||||+..+. .++++|++|++.|+.||+|.|+|+|..++.+++++ +|++||++++|+|||+| .+||++++|+++++.+
T Consensus        92 iQ~v~~~~~-~~~~~~~~~~~~l~~es~V~V~G~v~~~~~~~~~~~~~~~El~~~~i~vls~a~~~lP~~~~d~~~~~~~  170 (548)
T 3i7f_A           92 CQALVMKSE-TISKEFVQFCQKISAESICDITGIVKAVEKPIEKATQQDVEIHVTSIAVVSLAEYPLPMQIEDLTFPSSV  170 (548)
T ss_dssp             EEEEEECSS-SSCHHHHHHHHTCCTTEEEEEEEEEEECSSCCTTSSSCSEEEEEEEEEEEECCCBSCSSCSGGGSCCHHH
T ss_pred             EEEEEECCC-ccCHHHHHHHhCCCCCCEEEEEEEEEeCCcccccCCCCcEEEEEeEEEEEecCCCCCCCCchhccccccc
Confidence            999998743 36789999999999999999999999987777676 48899999999999999 8999999999887654


Q ss_pred             HHhh--------------------------------------hhcCCCCCCCChhhhccccceeeechhhHHHHHHHhHH
Q 014856          195 IEKA--------------------------------------SKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQV  236 (417)
Q Consensus       195 ~~~~--------------------------------------~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs~i  236 (417)
                      .++.                                      ......+..+++++||+|||||||++.++++|++||.|
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~~~~~~~~~~~~e~rl~~R~LdLR~~~~~~~~r~Rs~i  250 (548)
T 3i7f_A          171 FKKQEEDIAKVDEKIAKFLKDNEGKDLTKRPLKDEYAKLLKEKASAQKYVKVSQDTRLDNRMLDLRTVTNIAIFRIQSAC  250 (548)
T ss_dssp             HHHHHHHTTCC-------------------------------CCCCCCCCCCCHHHHHTTHHHHTTSHHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccCCHHHhhhchhhccCCHHHHHHHHHHHHH
Confidence            3321                                      00112345689999999999999999999999999999


Q ss_pred             HHHHHHHhhhCCcEeecCceeeecCCCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCccc
Q 014856          237 GNIFRQFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRH  316 (417)
Q Consensus       237 ~~~iR~fl~~~gF~EV~TP~l~~~~~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~rH  316 (417)
                      +++||+||.++||+||+||+|+++++|||+++|.++||+.++||+||||||||++|++|++|||+||||||||+++|+||
T Consensus       251 ~~~iR~ff~~~gF~EVeTPiL~~~~~egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR~E~~~t~RH  330 (548)
T 3i7f_A          251 CGLFREFLTSQKFVEIHTPKLIGCSSEGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFRAENSNTRRH  330 (548)
T ss_dssp             HHHHHHHHHHTTCEECCCCSBC-------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECCCSCCCSSSC
T ss_pred             HHHHHHHHHhCCCEEEeCCEEecccCCCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEecCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccceeeechhccHHHHHHHHHHHHHHHhHHhhhhhHHHHHHhhhcCCCcccCCCCCCceeeHHHHHHHHHHcCCCC
Q 014856          317 LCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEAVAKQYPFEPLKYKPKTLRLTFEEGVQMLKDAGVEI  396 (417)
Q Consensus       317 l~EFt~lE~e~a~~~~~~d~m~~~e~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~rit~~eAi~~L~~~g~~~  396 (417)
                      |||||||||||+|.++|+|+|+++|+||+++++.+.++|..++..++..++...+++ .||+||||.||+++|++.|+++
T Consensus       331 l~EFtmlE~e~af~~d~~d~m~~~E~li~~i~~~~~~~~~~el~~~~~~~~~~~~~~-~pf~rit~~eai~~l~~~g~~~  409 (548)
T 3i7f_A          331 LTEFEGLDIEMEIVENYHECIDVMEKLFTFIFDEIPKRFPDELKVIRKQYPFEDLIY-RPFLRLTYKEAIEMLRASGETI  409 (548)
T ss_dssp             CSCEEEEEEEEECSSCTHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCC-CSCEEEEHHHHHHHHHHTTCCC
T ss_pred             chhhhchhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhcCCcccccc-CCcceeEHHHHHHHHHHcCCCC
Confidence            999999999999986699999999999999999999999999988888888777776 7999999999999999999999


Q ss_pred             CCCCCCCcHHHHHHHHHhhc
Q 014856          397 DPLGDLNTESERKLGQLVLE  416 (417)
Q Consensus       397 ~~~~dl~te~E~~L~~~vke  416 (417)
                      +|++||++++|++|+++|.+
T Consensus       410 ~~~~dl~~~~e~~l~~~i~~  429 (548)
T 3i7f_A          410 GDYDDFTTPQEVKLGELIKA  429 (548)
T ss_dssp             CTTCCCCHHHHHHHHHHHHH
T ss_pred             CCccccchHHHHHHHHHHHH
Confidence            99999999999999999865
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A* Back     alignment and structure
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A* Back     alignment and structure
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens} Back     alignment and structure
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A Back     alignment and structure
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis} Back     alignment and structure
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii} Back     alignment and structure
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A* Back     alignment and structure
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A Back     alignment and structure
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A Back     alignment and structure
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A* Back     alignment and structure
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A* Back     alignment and structure
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A Back     alignment and structure
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A* Back     alignment and structure
>4ah6_A Aspartate--tRNA ligase, mitochondrial; 3.70A {Homo sapiens} Back     alignment and structure
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A* Back     alignment and structure
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A* Back     alignment and structure
>3qtc_A Pyrrolysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP B O-methyl tyrosine binding, magnesium binding, aminoacylatio esterification; HET: 0A1 ANP; 1.75A {Methanosarcina mazei} PDB: 2q7e_A* 2q7g_A* 2q7h_A* 2zim_A* 2zin_A* 2e3c_A* 2zcd_A* 2zce_A* 2zio_A* 3vqv_A* 3vqw_A* 3vqx_A* 3vqy_A* Back     alignment and structure
>2rhq_A Phenylalanyl-tRNA synthetase alpha chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_A* Back     alignment and structure
>1b7y_A Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: d.104.1.1 PDB: 1b70_A* 1eiy_A 1jjc_A* 1pys_A 2iy5_A* 3hfz_A* 3teh_A* 2aly_A* 2akw_A* 2amc_A* Back     alignment and structure
>12as_A Asparagine synthetase; ligase, nitrogen fixation; HET: AMP; 2.20A {Escherichia coli K12} SCOP: d.104.1.1 PDB: 11as_A* Back     alignment and structure
>3dsq_A Pyrrolysyl-tRNA synthetase; homodimer, aminoacyl-tRNA synthetase, ligase; 2.10A {Desulfitobacterium hafniense} PDB: 2znj_A 2zni_A Back     alignment and structure
>1evl_A Threonyl-tRNA synthetase; amino acid recognition, zinc ION, adenylate analog, deletion mutant, ligase; HET: TSB; 1.55A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1evk_A* 1fyf_A* 1kog_A* Back     alignment and structure
>3pco_A Phenylalanyl-tRNA synthetase, alpha subunit; aminoacylation, tRNA-binding, DNA-binding domain, four-helix aminoacyl-tRNA synthetase, ATP-binding; HET: PHE AMP; 3.02A {Escherichia coli} Back     alignment and structure
>1qe0_A Histidyl-tRNA synthetase; class II tRNA synthetase, beta sheet, ligase; 2.70A {Staphylococcus aureus} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>1z7m_A ATP phosphoribosyltransferase regulatory subunit; ATP-PRT, histidine biosynthesis, hiszg, alloste evolution; 2.90A {Lactococcus lactis} SCOP: d.104.1.1 PDB: 1z7n_A* Back     alignment and structure
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris} PDB: 2i4m_A* 2i4n_A* 2i4o_A* Back     alignment and structure
>1wu7_A Histidyl-tRNA synthetase; ligase, structural genomics, dimer; 2.40A {Thermoplasma acidophilum} SCOP: c.51.1.1 d.104.1.1 Back     alignment and structure
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus} Back     alignment and structure
>1nyr_A Threonyl-tRNA synthetase 1; ATP, threonine, ligase; HET: ATP; 2.80A {Staphylococcus aureus} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 PDB: 1nyq_A* Back     alignment and structure
>3od1_A ATP phosphoribosyltransferase regulatory subunit; structural genomics, PSI-2, protein structure initiative; 1.97A {Bacillus halodurans} Back     alignment and structure
>1h4v_B Histidyl-tRNA synthetase; class IIA aminoacyl-tRNA synthetase, ATP + L-histidine tRNA(His)-> AMP + PPI + L-histidyl-tRNA(His); 2.4A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1ady_A* 1adj_A Back     alignment and structure
>1hc7_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP + L-proline + tRNA(Pro) AMP + PPI + L-prolyl-tRNA(Pro); 2.43A {Thermus thermophilus} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1h4q_A* 1h4t_A 1h4s_A Back     alignment and structure
>4e51_A Histidine--tRNA ligase; seattle structural genomics center for infectious disease, S aminoacylation, tRNA activation, charged tRNA; HET: HIS; 2.65A {Burkholderia thailandensis} Back     alignment and structure
>1htt_A Histidyl-tRNA synthetase; complex (tRNA synthetase/His-adenylate), aminoacyl-tRNA synthase, ligase; HET: HIS AMP; 2.60A {Escherichia coli} SCOP: c.51.1.1 d.104.1.1 PDB: 1kmm_A* 1kmn_A* 2el9_A* Back     alignment and structure
>3net_A Histidyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, structural genomics, PSI- nostoc, protein structure initiative; 2.70A {Nostoc SP} Back     alignment and structure
>1nj8_A Proline-tRNA synthetase, proline--tRNA ligase; class-II tRNA synthetase; 3.20A {Methanocaldococcus jannaschii} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 Back     alignment and structure
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>3rac_A Histidine-tRNA ligase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, PSI-BIO; 2.30A {Alicyclobacillus acidocaldarius subsp} Back     alignment and structure
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing, translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB: 2j3m_A* Back     alignment and structure
>3lc0_A Histidyl-tRNA synthetase; tRNA-ligase, aminoacyl-tRNA synthetase, ligase, structural G medical structural genomics of pathogenic protozoa; HET: HIS; 1.80A {Trypanosoma cruzi} PDB: 3hrk_A* 3hri_A Back     alignment and structure
>3uh0_A Threonyl-tRNA synthetase, mitochondrial; threonine tRNA, threonyl ADE threonyl sulfamoyl adenylate; HET: TSB; 2.00A {Saccharomyces cerevisiae} PDB: 3ugt_A 3ugq_A* 4eo4_A* Back     alignment and structure
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A Back     alignment and structure
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati translational regulation, protein/RNA, ligase-RNA complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A {Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1 d.104.1.1 Back     alignment and structure
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A Back     alignment and structure
>1nj1_A PROR, proline-tRNA synthetase, proline--tRNA ligase; protein-aminoacyladenylate complex class-II tRNA synthetase,; HET: 5CA; 2.55A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.51.1.1 d.68.5.1 d.104.1.1 PDB: 1nj2_A 1nj5_A* 1nj6_A* Back     alignment and structure
>3a32_A Probable threonyl-tRNA synthetase 1; aeropyrum pernix K1, protein biosynthesis, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; 2.30A {Aeropyrum pernix} PDB: 3a31_A Back     alignment and structure
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A Back     alignment and structure
>3vbb_A Seryl-tRNA synthetase, cytoplasmic; coiled-coil, ligase; 2.89A {Homo sapiens} Back     alignment and structure
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP; 2.27A {Mus musculus} PDB: 3j1t_A 3j1u_A Back     alignment and structure
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus} Back     alignment and structure
>4g84_A Histidine--tRNA ligase, cytoplasmic; synthetase; 2.40A {Homo sapiens} Back     alignment and structure
>3ial_A Prolyl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, prors, cysrs, RS, translation, ATP-binding, nucleotide-binding; HET: PR8; 2.20A {Giardia lamblia atcc 50803} Back     alignment and structure
>4g85_A Histidine-tRNA ligase, cytoplasmic; synthetase; 3.11A {Homo sapiens} Back     alignment and structure
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A* Back     alignment and structure
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP: d.104.1.1 PDB: 1usy_C* Back     alignment and structure
>4hvc_A Bifunctional glutamate/proline--tRNA ligase; ligase-ligase inhibitor complex; HET: ANP HFG; 2.00A {Homo sapiens} Back     alignment and structure
>2cja_A Seryl-tRNA synthetase; ligase, zinc ION; HET: MSE ATP; 2.2A {Methanosarcina barkeri} PDB: 2cim_A* 2cj9_A* 2cjb_A Back     alignment and structure
>1ati_A Glycyl-tRNA synthetase; protein biosynthesis, ligase, aminoacyl-tRNA SYN; 2.75A {Thermus thermophilus} SCOP: c.51.1.1 d.104.1.1 PDB: 1b76_A* 1ggm_A* Back     alignment and structure
>2du3_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase/RNA complex; HET: SEP; 2.60A {Archaeoglobus fulgidus} PDB: 2du4_A 2du5_A* 2du6_A* Back     alignment and structure
>3mf2_A BLL0957 protein; aminoacyl-tRNA synthetase, seryl-tRNA synthetase, zinc ION, amino acid:[carrier protein] ligase; HET: AMP; 2.15A {Bradyrhizobium japonicum} PDB: 3mey_A* 3mf1_A* 3pzc_A* Back     alignment and structure
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii} Back     alignment and structure
>3cmq_A Phenylalanyl-tRNA synthetase, mitochondrial; classii aarss fold, RRM domain, RNA recogntion, aminoacyl-tRNA synthetase, ATP-binding, ligase; HET: FA5; 2.20A {Homo sapiens} PDB: 3hfv_A* 3teg_A* 3tup_A Back     alignment and structure
>2zt5_A Glycyl-tRNA synthetase; ligase, AP4A, glycine, ATP, Gly-AMP, aminoacyl-tRNA synthetase, ATP-binding, charcot-marie-tooth disease, disease mutation; HET: B4P; 2.50A {Homo sapiens} PDB: 2pme_A* 2zt6_A* 2zt7_A* 2zt8_A* 2zxf_A* 2pmf_A 2q5h_A 2q5i_A Back     alignment and structure
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class II, ligase; 3.23A {Methanococcus maripaludis} Back     alignment and structure
>3ikl_A DNA polymerase subunit gamma-2, mitochondrial; transferase; HET: DNA; 3.10A {Homo sapiens} Back     alignment and structure
>1g5h_A Mitochondrial DNA polymerase accessory subunit; intermolecular four helix bundle, DNA binding protein; 1.95A {Mus musculus} SCOP: c.51.1.1 d.104.1.1 PDB: 1g5i_A 2g4c_A* 3ikm_B* Back     alignment and structure
>3ig2_A Phenylalanyl-tRNA synthetase beta chain; phers, MCSG, structural genomics, midwest center for structural GE protein structure initiative; HET: MSE; 2.09A {Bacteroides fragilis} Back     alignment and structure
>3l4g_B Phenylalanyl-tRNA synthetase beta chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens} Back     alignment and structure
>2rhq_B Phenylalanyl-tRNA synthetase beta chain; heterotetramer, phenylalanine, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: GAX; 2.20A {Staphylococcus haemolyticus} PDB: 2rhs_B* Back     alignment and structure
>3ica_A Phenylalanyl-tRNA synthetase beta chain; APC61692.1, phenylalanyl-tRNA SYNT beta subunit, structural genomics, PSI-2; HET: TAM; 2.44A {Porphyromonas gingivalis} Back     alignment and structure
>1b7y_B Phers, protein (phenylalanyl-tRNA synthetase); enzyme, alpha/beta homodimer, ligase; HET: FYA; 2.50A {Thermus thermophilus} SCOP: a.6.1.1 a.6.1.1 b.40.4.4 b.153.1.1 d.58.13.1 d.104.1.1 PDB: 1b70_B* 1eiy_B 1jjc_B* 1pys_B 2akw_B* 2aly_B* 2amc_B* 3hfz_B* 3teh_B* 2iy5_B* Back     alignment and structure
>3dm3_A Replication factor A; probably plays AN essential for replication of the chromosome, DNA recombination and repair; 2.40A {Methanocaldococcus jannaschii} Back     alignment and structure
>3fhw_A Primosomal replication protein N; PRIB BPR162 X-RAY NESG, structural genomics, PSI-2, protein initiative; 1.90A {Bordetella parapertussis} PDB: 3dm4_A 3klw_A Back     alignment and structure
>1txy_A Primosomal replication protein N; OB fold, dimer, DNA binding protein; 2.00A {Escherichia coli} SCOP: b.40.4.3 PDB: 1woc_A 2pnh_A 4apv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 417
d1eova2 353 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (As 4e-49
d1n9wa2 304 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (As 2e-33
d1c0aa3 346 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synt 4e-33
d1l0wa3 356 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synt 6e-33
d1b8aa2 335 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (As 7e-31
d1nnha_293 d.104.1.1 (A:) Hypothetical protein PF1951 {Archae 8e-29
d1e1oa2 342 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS 2e-26
d1eova1134 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspR 2e-11
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 353 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  168 bits (426), Expect = 4e-49
 Identities = 130/238 (54%), Positives = 165/238 (69%), Gaps = 7/238 (2%)

Query: 182 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFR 241
           PI +EDASRSEAE E A      LP VN DTRL+ RVID+RT+ NQ IFRIQ+ V  +FR
Sbjct: 1   PILLEDASRSEAEAEAA-----GLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFR 55

Query: 242 QFLLSENFVEIHTPKLIAGSSEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFE 301
           ++L ++ F E+HTPKL+   SEGGS+VF + Y    A LAQSPQ +KQ  I  DF RV+E
Sbjct: 56  EYLATKKFTEVHTPKLLGAPSEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYE 115

Query: 302 TGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVDCLFVTIFDSLNNVCKKELEA 361
            GPVFRAE+S THRH+ EFTGLD+EM  ++HY EV+D +  LFV IF  L      E+E 
Sbjct: 116 IGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLSELFVFIFSELPKRFAHEIEL 175

Query: 362 VAKQYPFEPLKYKP--KTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLEK 417
           V KQYP E  K     K +RLT++EG++ML+ AG EI    DL+TE+E+ LG+LV +K
Sbjct: 176 VRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRDK 233
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Length = 304 Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Length = 346 Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Length = 356 Back     information, alignment and structure
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Length = 335 Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 293 Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Length = 342 Back     information, alignment and structure
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 134 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query417
d1eova2 353 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 100.0
d1b8aa2 335 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 100.0
d1e1oa2 342 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 100.0
d1l0wa3 356 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 100.0
d1c0aa3 346 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 100.0
d1n9wa2 304 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 100.0
d1nnha_293 Hypothetical protein PF1951 {Archaeon Pyrococcus f 100.0
d1eova1134 Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (S 99.68
d1e1oa1143 Lysyl-tRNA synthetase (LysRS) {Escherichia coli, g 99.49
d1b8aa1103 Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococ 99.3
d1l0wa1104 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 99.21
d1c0aa1106 Aspartyl-tRNA synthetase (AspRS) {Escherichia coli 99.19
d1n9wa193 Aspartyl-tRNA synthetase (AspRS) {Thermus thermoph 99.15
d1z7ma1318 ATP phosphoribosyltransferase regulatory subunit H 97.96
d1jjca_266 Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS 97.92
d1nyra4291 Threonyl-tRNA synthetase (ThrRS) {Staphylococcus a 97.81
d1qf6a4291 Threonyl-tRNA synthetase (ThrRS) {Escherichia coli 97.79
d1qe0a2 325 Histidyl-tRNA synthetase (HisRS) {Staphylococcus a 97.69
d1nj8a3268 Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanoc 97.6
d1wu7a2 327 Histidyl-tRNA synthetase (HisRS) {Archaeon Thermop 97.54
d1hc7a2272 Prolyl-tRNA synthetase (ProRS) {Thermus thermophil 97.54
d1h4vb2 324 Histidyl-tRNA synthetase (HisRS) {Thermus thermoph 97.22
d1kmma2322 Histidyl-tRNA synthetase (HisRS) {Escherichia coli 97.16
d1seta2311 Seryl-tRNA synthetase (SerRS) {Thermus thermophilu 97.08
d1nj1a3265 Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanoth 97.02
d1b76a2331 Glycyl-tRNA synthetase (GlyRS) {Thermus thermophil 97.01
d1usya_275 ATP phosphoribosyltransferase regulatory subunit H 96.76
d1jjcb5207 Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, 86.39
d12asa_ 327 Asparagine synthetase {Escherichia coli [TaxId: 56 83.11
>d1eova2 d.104.1.1 (A:205-557) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Class II aaRS and biotin synthetases
superfamily: Class II aaRS and biotin synthetases
family: Class II aminoacyl-tRNA synthetase (aaRS)-like, catalytic domain
domain: Aspartyl-tRNA synthetase (AspRS)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=6.6e-53  Score=422.06  Aligned_cols=230  Identities=56%  Similarity=0.869  Sum_probs=209.5

Q ss_pred             CcccccccchHHHHHhhhhcCCCCCCCChhhhccccceeeechhhHHHHHHHhHHHHHHHHHhhhCCcEeecCceeeecC
Q 014856          182 PITIEDASRSEAEIEKASKEGVQLPRVNQDTRLNNRVIDIRTLANQGIFRIQSQVGNIFRQFLLSENFVEIHTPKLIAGS  261 (417)
Q Consensus       182 P~~~~~~~~~~~~~~~~~~~~~~~~~~~~etRl~~R~LdlR~~~~~~i~~~rs~i~~~iR~fl~~~gF~EV~TP~l~~~~  261 (417)
                      |+.+.|+++++...+.     ...+.++.|+||||||||||++.++++||+||.|++++|+||.++||+||+||+|++++
T Consensus         1 ~~~~~~~~~~~~~~~~-----~~~~~~~~e~r~~~R~lDlr~~~~~~ilr~Rs~i~~~iR~ff~~~gflEV~TPiL~~~~   75 (353)
T d1eova2           1 PILLEDASRSEAEAEA-----AGLPVVNLDTRLDYRVIDLRTVTNQAIFRIQAGVCELFREYLATKKFTEVHTPKLLGAP   75 (353)
T ss_dssp             SSCHHHHTSCHHHHHH-----TTCCCCCHHHHHHTHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEECCCCSEESSC
T ss_pred             CcccccccCCcccccc-----cCCCCCCHHHHhhhhHHhhCCHhHHHHHHHHHHHHHHHHHHHHHCCCEEEECCccCCCC
Confidence            6777888887665544     35677999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCcceeeeccCCCceeeccCHHHHHHHhhcccCCceEEEeeccccCCCCCcccccccccceeeechhccHHHHHHHHH
Q 014856          262 SEGGSAVFRLDYKGQSACLAQSPQLHKQMSICGDFGRVFETGPVFRAEDSYTHRHLCEFTGLDVEMEIKKHYSEVMDIVD  341 (417)
Q Consensus       262 ~egga~~F~v~~~~~~~~L~~Spql~lq~li~~g~~rVfeIgp~FR~E~s~t~rHl~EFt~lE~e~a~~~~~~d~m~~~e  341 (417)
                      ||||+++|.+.|++.++||+||||||||+++++|++|||+||||||||++++.||||||||||||++|.++|+++|+++|
T Consensus        76 ~eg~~~~f~~~~~~~~~yL~~Spel~lk~ll~~g~~~vf~I~~~FR~E~~~~~rH~pEFtmLE~y~a~~d~~~~i~~~~e  155 (353)
T d1eova2          76 SEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFRAENSNTHRHMTEFTGLDMEMAFEEHYHEVLDTLS  155 (353)
T ss_dssp             SSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEECCCCCCCTTCCSEEEEEEEEEECSSCTHHHHHHHH
T ss_pred             CcchhccccceeeCCcceeccchhhhhhhhhhcccccceeechhhhccccccccccchhcccccccccchhhHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888999999999999999987999999999


Q ss_pred             HHHHHHhHHhhhhhHHHHHHhhhcCCCcccCC--CCCCceeeHHHHHHHHHHcCCCCCCCCCCCcHHHHHHHHHhhc
Q 014856          342 CLFVTIFDSLNNVCKKELEAVAKQYPFEPLKY--KPKTLRLTFEEGVQMLKDAGVEIDPLGDLNTESERKLGQLVLE  416 (417)
Q Consensus       342 ~li~~i~~~~~~~~~~~l~~~~~~~~~~~~~~--~~p~~rit~~eAi~~L~~~g~~~~~~~dl~te~E~~L~~~vke  416 (417)
                      +|+.++++.+..++...+..+...++......  ..++.|++|.+|+++|++.+..+.+.+|+.++.++.|++++.+
T Consensus       156 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ri~~~ea~~~l~~~~~~~~~~~~~~~~~~~~l~~~i~~  232 (353)
T d1eova2         156 ELFVFIFSELPKRFAHEIELVRKQYPVEEFKLPKDGKMVRLTYKEGIEMLRAAGKEIGDFEDLSTENEKFLGKLVRD  232 (353)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHSCCCCCCCCTTCCCEEEEHHHHHHHHHHTTCCCCTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHhhhccccchhhhhhhhhhcccCccceeeccCCCceeeeehHhhHHHHHHHhhhcccccccchhhHHHHHHHHHh
Confidence            99999999999988888887776666544332  3479999999999999999988888899999999999998764
>d1b8aa2 d.104.1.1 (A:104-438) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1l0wa3 d.104.1.1 (A:105-294,A:415-580) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1n9wa2 d.104.1.1 (A:111-414) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1nnha_ d.104.1.1 (A:) Hypothetical protein PF1951 {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1eova1 b.40.4.1 (A:71-204) Aspartyl-tRNA synthetase (AspRS) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1e1oa1 b.40.4.1 (A:11-153) Lysyl-tRNA synthetase (LysRS) {Escherichia coli, gene lysU [TaxId: 562]} Back     information, alignment and structure
>d1b8aa1 b.40.4.1 (A:1-103) Aspartyl-tRNA synthetase (AspRS) {Archaeon Pyrococcus kodakaraensis [TaxId: 311400]} Back     information, alignment and structure
>d1l0wa1 b.40.4.1 (A:1-104) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-1 [TaxId: 274]} Back     information, alignment and structure
>d1c0aa1 b.40.4.1 (A:1-106) Aspartyl-tRNA synthetase (AspRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1n9wa1 b.40.4.1 (A:1-93) Aspartyl-tRNA synthetase (AspRS) {Thermus thermophilus, AspRS-2 [TaxId: 274]} Back     information, alignment and structure
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase regulatory subunit HisZ {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
>d1jjca_ d.104.1.1 (A:) Phenyl-tRNA synthetase (PheRS) alpha subunit, PheS {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1nyra4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1qf6a4 d.104.1.1 (A:242-532) Threonyl-tRNA synthetase (ThrRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1qe0a2 d.104.1.1 (A:1-325) Histidyl-tRNA synthetase (HisRS) {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d1nj8a3 d.104.1.1 (A:0-267) Prolyl-tRNA synthetase (ProRS) {Archaeon (Methanocaldococcus jannaschii) [TaxId: 2190]} Back     information, alignment and structure
>d1wu7a2 d.104.1.1 (A:3-329) Histidyl-tRNA synthetase (HisRS) {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1hc7a2 d.104.1.1 (A:5-276) Prolyl-tRNA synthetase (ProRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1h4vb2 d.104.1.1 (B:2-325) Histidyl-tRNA synthetase (HisRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1kmma2 d.104.1.1 (A:4-325) Histidyl-tRNA synthetase (HisRS) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1seta2 d.104.1.1 (A:111-421) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]} Back     information, alignment and structure
>d1nj1a3 d.104.1.1 (A:19-283) Prolyl-tRNA synthetase (ProRS) {Arhaeon (Methanothermobacter thermautotrophicus) [TaxId: 145262]} Back     information, alignment and structure
>d1b76a2 d.104.1.1 (A:1-394) Glycyl-tRNA synthetase (GlyRS) {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory subunit HisZ {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1jjcb5 d.104.1.1 (B:475-681) Phenyl-tRNA synthetase (PheRS) beta subunit, PheT, central domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d12asa_ d.104.1.1 (A:) Asparagine synthetase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure