Citrus Sinensis ID: 014860

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------
Protein Sequence
MMIIAGRNWLRQIFSHRTFNKHLCCTNSSHNSKTLSNYYLSQTQINPHLKLSSNAILCSCYSAIALSRSSSRGVGKRSKADSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGNSIRHHLR
Secondary Structure (PSIPRED)
cEEEcccccHHHHHHHHHcccccccccccccHHHHHHHHHccccccHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccHHHHHcHHccccccccHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcHHHHHHcccc
Secondary Structure Prediction (SSPRO)
cHHHHcHHHHHHHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MMIIAGRNWLRQIFSHRtfnkhlcctnsshnsktlsNYYLsqtqinphlklssnaILCSCYSAIAlsrsssrgvgkrskadskpalddtqfrcavselpprfnneelcnvmtlqedpLVCLELFnwaskqprfrhdasTYHIMTRKLGAAKMYQEMDDVVNQMlatpsfcgteALYNTIIYFFAEARKLSRAVYVFKYMknsrnlecrpsirsYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVndgiepdifSLNSMIKGYILSNHVNDALRIFHQMGVVynylpnsfsydYLIHGLCAQGRTKNARELCDEMkrkgfvpssksYNSLVSALALNGEVEETVKNLWEMIEkqrpvdfiTYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEddfgnsirhhlr
Flexible Loop (DISEMBL)
MMIIAGRNWLRQIFSHRTFNKHLCCTNSSHNSKTLSNYYLSQTQINPHLKLSSNAILCSCYSAIAlsrsssrgvgkrskadskpalddtqfrcavselpprfNNEELCNVMTLQEDPLVCLELFNWASKqprfrhdastYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMknsrnlecrpsiRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRkgfvpssksyNSLVSALALNGEVEETVKNLWEmiekqrpvdfityRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGNSIRHHLR
Low Complexity Region (SEG)
MMIIAGRNWLRQIFSHRTFNKHLCCTNSSHNSKTLSNYYLSQTQINPHLKLSSNAILCSCYSAIALsrsssrgvgkrskADSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGNSIRHHLR
Disordered region (IsUnstruct)
**IIAGRNWLRQIFSHRTFNKHLCCTNSSHNSKTLSNYYLSQTQINPHLKLSSNAILCSCYSAIAL************************FRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDE*****FV****SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFG********
Disordered Region (DISOPRED)
*********L****SHRTFNKHLCCTNSSHNSKTLSNYYLSQTQINPHLKLSSNAILCSCYSAIALSRSSSRGVGKRSKADSKPAL**TQFR*AVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGN**RHHLR
Disordered Region (DISEMBL)
MMIIAGRNWLRQIFSHRTFNKHLCCTNSSHNSKTLSNYYLSQTQINPHLKLSSNAILCSCYSAIALS*******************DDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGNSIRHHLR
Disordered Region (DISPRO)
MMIIAGRNWLRQIFSHRTFNKHLCCTNSSHNSKTLSNYYLSQTQINPHLKLSSNAILCSCYSAIALSRSSSRGVGKRSKADSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGNSI*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMIIAGRNWLRQIFSHRTFNKHLCCTNSSHNSKTLSNYYLSQTQINPHLKLSSNAILCSCYSAIALSRSSSRGVGKRSKADSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGNSIRHHLR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	417	2.2.26 [Sep-21-2011]
Q9ZUY1	442	Pentatricopeptide repeat-	yes	no	0.832	0.785	0.612	1e-128
Q9LSF5	379	Pentatricopeptide repeat-	no	no	0.745	0.820	0.312	3e-43
Q8LDU5	466	Pentatricopeptide repeat-	no	no	0.623	0.557	0.299	1e-27
Q9SS81	687	Pentatricopeptide repeat-	no	no	0.709	0.430	0.252	2e-24
Q9CA58	763	Putative pentatricopeptid	no	no	0.702	0.384	0.247	6e-24
Q0WVK7	741	Pentatricopeptide repeat-	no	no	0.494	0.278	0.325	8e-24
Q84VG6	626	Pentatricopeptide repeat-	no	no	0.606	0.404	0.254	5e-23
P0C894	761	Putative pentatricopeptid	no	no	0.628	0.344	0.243	8e-23
Q9ZUU3	757	Pentatricopeptide repeat-	no	no	0.719	0.396	0.263	1e-22
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.496	0.277	0.296	3e-22

>sp|Q9ZUY1|PP173_ARATH Pentatricopeptide repeat-containing protein At2g27800, mitochondrial OS=Arabidopsis thaliana GN=At2g27800 PE=2 SV=2

 Score =  459 bits (1181), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 213/348 (61%), Positives = 272/348 (78%), Gaps = 1/348 (0%)

Query: 61  YSAIALSRSSSRGVGKRSKADSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVC 120
           YS    +RS  R +  R K+ +KP L+ ++F   +S+LPPRF  EEL + +TL+EDP +C
Sbjct: 96  YSTSVPTRSLRRRISNRKKSSAKPILNVSKFHETISKLPPRFTPEELADAITLEEDPFLC 155

Query: 121 LELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII 180
             LFNWAS+QPRF H+  +YHI  RKLGAAKMYQEMDD+VNQ+L+     G E LYN+II
Sbjct: 156 FHLFNWASQQPRFTHENCSYHIAIRKLGAAKMYQEMDDIVNQVLSV-RHIGNENLYNSII 214

Query: 181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRC 240
           ++F +A KL RAV +F++M  S+NLECRP+IR+Y+ILF A L RG N+YINHVYMET+R 
Sbjct: 215 FYFTKAGKLIRAVNIFRHMVTSKNLECRPTIRTYHILFKALLGRGNNSYINHVYMETVRS 274

Query: 241 LFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGL 300
           LF+QMV+ GIEPD+F+LN ++KGY+LS HVNDALRIFHQM VVY+  PNSF+YDYLIHGL
Sbjct: 275 LFRQMVDSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGL 334

Query: 301 CAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF 360
           CAQGRT NAREL  EMK KGFVP+ KSYNSLV+A AL+GE+++ VK LWEMIE  R VDF
Sbjct: 335 CAQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENGRVVDF 394

Query: 361 ITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDF 408
           I+YRT++DE CR+G+  EA +LL+ L+ K L+D  +Y KL++VL  D 
Sbjct: 395 ISYRTLVDESCRKGKYDEATRLLEMLREKQLVDRDSYDKLVNVLHKDL 442

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSF5|PP254_ARATH Pentatricopeptide repeat-containing protein At3g25210, mitochondrial OS=Arabidopsis thaliana GN=At3g25210 PE=2 SV=1

 Score =  176 bits (446), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 99/317 (31%), Positives = 176/317 (55%), Gaps = 6/317 (1%)

Query: 88  DTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKL 147
           +TQF   +  L P F N ++   +  Q DP + L++F W ++Q  ++H+   YH M ++ 
Sbjct: 59  ETQFETWIQNLKPGFTNSDVVIALRAQSDPDLALDIFRWTAQQRGYKHNHEAYHTMIKQA 118

Query: 148 GAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL-SRAVYVFKYMKNSRNLE 206
              K    ++ ++ +++A         LYN II F    + L +RA  V  Y K  R+ +
Sbjct: 119 ITGKRNNFVETLIEEVIAGACEMSV-PLYNCIIRFCCGRKFLFNRAFDV--YNKMLRSDD 175

Query: 207 CRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL 266
            +P + +Y +L ++ L R     + +VY+  +R L KQM ++G+ PD F LN +IK Y  
Sbjct: 176 SKPDLETYTLLLSSLLKRFNKLNVCYVYLHAVRSLTKQMKSNGVIPDTFVLNMIIKAYAK 235

Query: 267 SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK 326
              V++A+R+F +M + Y   PN+++Y YL+ G+C +GR         EM+ KG VP+  
Sbjct: 236 CLEVDEAIRVFKEMAL-YGSEPNAYTYSYLVKGVCEKGRVGQGLGFYKEMQVKGMVPNGS 294

Query: 327 SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKEL 386
            Y  L+ +L++   ++E V+ +++M+      D +TY TVL E+CR GR  EA+++++E 
Sbjct: 295 CYMVLICSLSMERRLDEAVEVVYDMLANSLSPDMLTYNTVLTELCRGGRGSEALEMVEEW 354

Query: 387 QNKNLIDG-YTYTKLLD 402
           + ++ + G   Y  L+D
Sbjct: 355 KKRDPVMGERNYRTLMD 371

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400, mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2 SV=2

 Score =  124 bits (311), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/274 (29%), Positives = 143/274 (52%), Gaps = 14/274 (5%)

Query: 114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTE 173
           Q DPL+  E+F++AS+QP FRH  S++ I+  KLG  + +  +DDV+ +  ++  +  T 
Sbjct: 61  QSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSS-GYPLTG 119

Query: 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS-RGKNTYINH 232
            ++  +I  +AEA+   + +  F  M         P  +  N +    +S RG       
Sbjct: 120 EIFTYLIKVYAEAKLPEKVLSTFYKM---LEFNFTPQPKHLNRILDVLVSHRG------- 169

Query: 233 VYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS 292
            Y++    LFK     G+ P+  S N +++ + L++ ++ A ++F +M +  + +P+  S
Sbjct: 170 -YLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKM-LERDVVPDVDS 227

Query: 293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMI 352
           Y  LI G C +G+   A EL D+M  KGFVP   SY +L+++L    ++ E  K L  M 
Sbjct: 228 YKILIQGFCRKGQVNGAMELLDDMLNKGFVPDRLSYTTLLNSLCRKTQLREAYKLLCRMK 287

Query: 353 EKQRPVDFITYRTVLDEICRRGRAGEAMKLLKEL 386
            K    D + Y T++   CR  RA +A K+L ++
Sbjct: 288 LKGCNPDLVHYNTMILGFCREDRAMDARKVLDDM 321

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060 OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/337 (25%), Positives = 153/337 (45%), Gaps = 41/337 (12%)

Query: 98  LPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMD 157
            P   + + +  ++  +++P     LF+ A++ P + H A  YH + R+L   +M   + 
Sbjct: 4   FPKSLSPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVS 63

Query: 158 DVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL 217
            +V  + +    C  E +  ++I  + +     +A+ VFK M+      C P+IRSYN L
Sbjct: 64  RIVELIRSQECKC-DEDVALSVIKTYGKNSMPDQALDVFKRMREI--FGCEPAIRSYNTL 120

Query: 218 FTAFLSRGKNTYINHVY---------------------------METIRCLFKQMVNDGI 250
             AF+   +   +  ++                            E  R     M  +G 
Sbjct: 121 LNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKARGFLDWMWKEGF 180

Query: 251 EPDIFSLNSMIKGYILSNHVNDALRIFHQM---GVVYNYLPNSFSYDYLIHGLCAQGRTK 307
           +PD+FS +++I     +  ++DAL +F +M   GV     P+   Y+ LI G   +   K
Sbjct: 181 KPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVA----PDVTCYNILIDGFLKEKDHK 236

Query: 308 NARELCDEMKRKGFV-PSSKSYNSLVSALALNGEVEETVKNLWE-MIEKQRPVDFITYRT 365
            A EL D +     V P+ K++N ++S L+  G V++ +K +WE M + +R  D  TY +
Sbjct: 237 TAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLK-IWERMKQNEREKDLYTYSS 295

Query: 366 VLDEICRRGRAGEAMKLLKEL-QNKNLIDGYTYTKLL 401
           ++  +C  G   +A  +  EL + K  ID  TY  +L
Sbjct: 296 LIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTML 332

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CA58|PP120_ARATH Putative pentatricopeptide repeat-containing protein At1g74580 OS=Arabidopsis thaliana GN=At1g74580 PE=3 SV=1

 Score =  112 bits (280), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 84/339 (24%), Positives = 153/339 (45%), Gaps = 46/339 (13%)

Query: 98  LPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMD 157
           + P    + +  V+  Q+DP+  LE+FN   K+  F+H  STY  +  KLG    ++ M+
Sbjct: 1   MGPPLLPKHVTAVIKCQKDPMKALEMFNSMRKEVGFKHTLSTYRSVIEKLGYYGKFEAME 60

Query: 158 DVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL 217
           +V+  M         E +Y   +  +    K+  AV VF+ M      +C P++ SYN +
Sbjct: 61  EVLVDMRENVGNHMLEGVYVGAMKNYGRKGKVQEAVNVFERMDF---YDCEPTVFSYNAI 117

Query: 218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIF 277
            +  +  G     + VYM        +M + GI PD++S    +K +  ++  + ALR+ 
Sbjct: 118 MSVLVDSGYFDQAHKVYM--------RMRDRGITPDVYSFTIRMKSFCKTSRPHAALRLL 169

Query: 278 HQMG-------------VVYNYLPNSF---------------------SYDYLIHGLCAQ 303
           + M              VV  +   +F                     +++ L+  LC +
Sbjct: 170 NNMSSQGCEMNVVAYCTVVGGFYEENFKAEGYELFGKMLASGVSLCLSTFNKLLRVLCKK 229

Query: 304 GRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITY 363
           G  K   +L D++ ++G +P+  +YN  +  L   GE++  V+ +  +IE+    D ITY
Sbjct: 230 GDVKECEKLLDKVIKRGVLPNLFTYNLFIQGLCQRGELDGAVRMVGCLIEQGPKPDVITY 289

Query: 364 RTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLL 401
             ++  +C+  +  EA   L ++ N+ L  D YTY  L+
Sbjct: 290 NNLIYGLCKNSKFQEAEVYLGKMVNEGLEPDSYTYNTLI 328

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WVK7|PPR12_ARATH Pentatricopeptide repeat-containing protein At1g05670, mitochondrial OS=Arabidopsis thaliana GN=At1g05670 PE=2 SV=1

 Score =  112 bits (279), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 71/218 (32%), Positives = 109/218 (50%), Gaps = 12/218 (5%)

Query: 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHV 233
            +Y T+I  F + R   RA   F Y  +SR++   P + +Y  + + F   G        
Sbjct: 352 VVYTTLIDGFCK-RGDIRAASKFFYEMHSRDIT--PDVLTYTAIISGFCQIGD------- 401

Query: 234 YMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY 293
            M     LF +M   G+EPD  +   +I GY  + H+ DA R+ + M +     PN  +Y
Sbjct: 402 -MVEAGKLFHEMFCKGLEPDSVTFTELINGYCKAGHMKDAFRVHNHM-IQAGCSPNVVTY 459

Query: 294 DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE 353
             LI GLC +G   +A EL  EM + G  P+  +YNS+V+ L  +G +EE VK + E   
Sbjct: 460 TTLIDGLCKEGDLDSANELLHEMWKIGLQPNIFTYNSIVNGLCKSGNIEEAVKLVGEFEA 519

Query: 354 KQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL 391
                D +TY T++D  C+ G   +A ++LKE+  K L
Sbjct: 520 AGLNADTVTYTTLMDAYCKSGEMDKAQEILKEMLGKGL 557

Arabidopsis thaliana (taxid: 3702)

>sp|Q84VG6|PP160_ARATH Pentatricopeptide repeat-containing protein At2g17525, mitochondrial OS=Arabidopsis thaliana GN=At2g17525 PE=2 SV=2

 Score =  108 bits (271), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 69/271 (25%), Positives = 129/271 (47%), Gaps = 18/271 (6%)

Query: 121 LELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII 180
           LE F WAS  P F H  STY  +  KL   + +  +  ++++M  +      +A++ TII
Sbjct: 60  LETFRWASTFPGFIHSRSTYRALFHKLCVFRRFDTVYQLLDEMPDSIGLPPDDAIFVTII 119

Query: 181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRC 240
             F  AR + R + V   +        +PS++ +N +    +            ++  R 
Sbjct: 120 RGFGRARLIKRVISVVDLVS---KFGIKPSLKVFNSILDVLVKED---------IDIARE 167

Query: 241 LF-KQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHG 299
            F ++M+  GI  D+++   ++KG  L+N + D  ++   M       PN+  Y+ L+H 
Sbjct: 168 FFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLLQIMK-TSGVAPNAVVYNTLLHA 226

Query: 300 LCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD 359
           LC  G+   AR L  EMK     P+  ++N L+SA     ++ +++  L +        D
Sbjct: 227 LCKNGKVGRARSLMSEMKE----PNDVTFNILISAYCNEQKLIQSMVLLEKCFSLGFVPD 282

Query: 360 FITYRTVLDEICRRGRAGEAMKLLKELQNKN 390
            +T   V++ +C  GR  EA+++L+ +++K 
Sbjct: 283 VVTVTKVMEVLCNEGRVSEALEVLERVESKG 313

Arabidopsis thaliana (taxid: 3702)

>sp|P0C894|PP143_ARATH Putative pentatricopeptide repeat-containing protein At2g02150 OS=Arabidopsis thaliana GN=At2g02150 PE=3 SV=1

 Score =  108 bits (270), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 72/296 (24%), Positives = 137/296 (46%), Gaps = 34/296 (11%)

Query: 110 VMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF 169
           ++ L+EDP +  + F W+  +  F+H   +Y I+   L  A+MY + + V+ +M+ + + 
Sbjct: 115 LVELKEDPKLAFKFFKWSMTRNGFKHSVESYCIVAHILFCARMYYDANSVLKEMVLSKAD 174

Query: 170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTY 229
           C                        VF  + ++RN+ C P    ++ LF+  +  G    
Sbjct: 175 CD-----------------------VFDVLWSTRNV-CVPGFGVFDALFSVLIDLG---- 206

Query: 230 INHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN 289
              +  E I+C F +M    + P   S N ++  +      +D  R F  M +     P 
Sbjct: 207 ---MLEEAIQC-FSKMKRFRVFPKTRSCNGLLHRFAKLGKTDDVKRFFKDM-IGAGARPT 261

Query: 290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLW 349
            F+Y+ +I  +C +G  + AR L +EMK +G VP + +YNS++      G +++TV    
Sbjct: 262 VFTYNIMIDCMCKEGDVEAARGLFEEMKFRGLVPDTVTYNSMIDGFGKVGRLDDTVCFFE 321

Query: 350 EMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVL 404
           EM +     D ITY  +++  C+ G+    ++  +E++   L  +  +Y+ L+D  
Sbjct: 322 EMKDMCCEPDVITYNALINCFCKFGKLPIGLEFYREMKGNGLKPNVVSYSTLVDAF 377

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZUU3|PP190_ARATH Pentatricopeptide repeat-containing protein At2g37230 OS=Arabidopsis thaliana GN=At2g37230 PE=2 SV=1

 Score =  108 bits (269), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/315 (26%), Positives = 145/315 (46%), Gaps = 15/315 (4%)

Query: 89  TQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLG 148
           T+ + ++ +L P +++  + NV+   +     L+ F W  +    RHD  T+  M + LG
Sbjct: 102 TRLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHMKMIKMLG 161

Query: 149 AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECR 208
                     ++  M         E ++  +I  + +A  +  +V +F+ MK+   L   
Sbjct: 162 EVSKLNHARCILLDM-PEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKD---LGVE 217

Query: 209 PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN 268
            +I+SYN LF   L RG+       YM   R  F +MV++G+EP   + N M+ G+ LS 
Sbjct: 218 RTIKSYNSLFKVILRRGR-------YMMAKR-YFNKMVSEGVEPTRHTYNLMLWGFFLSL 269

Query: 269 HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY 328
            +  ALR F  M       P+  +++ +I+G C   +   A +L  EMK     PS  SY
Sbjct: 270 RLETALRFFEDMKT-RGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSY 328

Query: 329 NSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388
            +++        V++ ++   EM       +  TY T+L  +C  G+  EA  +LK +  
Sbjct: 329 TTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMA 388

Query: 389 KNLI--DGYTYTKLL 401
           K++   D   + KLL
Sbjct: 389 KHIAPKDNSIFLKLL 403

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  106 bits (265), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 114/219 (52%), Gaps = 12/219 (5%)

Query: 168 SFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKN 227
             C  E  Y T++  F++   ++ A  V + M ++      PS+ +YN L       GK 
Sbjct: 375 GLCPNERTYTTLVDGFSQKGYMNEAYRVLREMNDNG---FSPSVVTYNALINGHCVTGK- 430

Query: 228 TYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYL 287
                  ME    + + M   G+ PD+ S ++++ G+  S  V++ALR+  +M V     
Sbjct: 431 -------MEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREM-VEKGIK 482

Query: 288 PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKN 347
           P++ +Y  LI G C Q RTK A +L +EM R G  P   +Y +L++A  + G++E+ ++ 
Sbjct: 483 PDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQL 542

Query: 348 LWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKEL 386
             EM+EK    D +TY  +++ + ++ R  EA +LL +L
Sbjct: 543 HNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKL 581

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
224142259	440	predicted protein [Populus trichocarpa]	0.971	0.920	0.647	1e-153
449520100	428	PREDICTED: pentatricopeptide repeat-cont	0.937	0.913	0.672	1e-152
449459126	428	PREDICTED: pentatricopeptide repeat-cont	0.937	0.913	0.670	1e-151
255570807	415	pentatricopeptide repeat-containing prot	0.901	0.906	0.623	1e-141
357472349	418	Pentatricopeptide repeat-containing prot	0.788	0.787	0.722	1e-136
356544625	438	PREDICTED: pentatricopeptide repeat-cont	0.791	0.753	0.641	1e-127
145360404	442	pentatricopeptide repeat-containing prot	0.832	0.785	0.612	1e-126
359478687	356	PREDICTED: pentatricopeptide repeat-cont	0.784	0.918	0.638	1e-126
3860252	427	hypothetical protein [Arabidopsis thalia	0.817	0.798	0.616	1e-126
297822503	436	hypothetical protein ARALYDRAFT_481728 [	0.832	0.795	0.600	1e-125

>gi|224142259|ref|XP_002324476.1| predicted protein [Populus trichocarpa] gi|222865910|gb|EEF03041.1| predicted protein [Populus trichocarpa]

 Score =  548 bits (1412), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 275/425 (64%), Positives = 326/425 (76%), Gaps = 20/425 (4%)

Query: 6   GRNWLRQIFSHRTFNKHLCCTNSSHNSK-------TLSNYYLSQTQINPHLK-------L 51
           G + LR I S + F     C N+ H+          L+ Y +  + +NP  +       L
Sbjct: 9   GGDCLRYILSKKIFISPPSCINTFHSKNLAKFPFPILTQYSVISSYLNPTARKLKDVDLL 68

Query: 52  SSNAILCSC-----YSAIALSRSSSRGVGKRSKADSKPALDDTQFRCAVSELPPRFNNEE 106
           +   IL S      YS  A SRS  +   KR+KA+S+P LD+ +F+ +VS+LP RF NEE
Sbjct: 69  AQTQILPSSNFSTFYSTKAPSRSFRKRNNKRAKANSRPILDEAKFQRSVSQLPSRFTNEE 128

Query: 107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT 166
           LCN +TL++DPLVCLELFNWAS+Q RFRHDASTYH+  +KLG AKMYQEMDDVVNQ+LA 
Sbjct: 129 LCNNITLEDDPLVCLELFNWASQQHRFRHDASTYHVTIKKLGIAKMYQEMDDVVNQLLAV 188

Query: 167 PSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK 226
           P   G EALYN+IIY+F EARKL+RAV +FK MK+SRNL+CRPSI++YNIL TA LSRG+
Sbjct: 189 PHI-GNEALYNSIIYYFTEARKLTRAVNIFKRMKSSRNLDCRPSIKTYNILLTAMLSRGR 247

Query: 227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNY 286
           N+YINH+YMET+RCLFKQMV+DG+EPDIFSLNSMIKGY LS HVNDALR+FHQMGVVY  
Sbjct: 248 NSYINHMYMETMRCLFKQMVDDGVEPDIFSLNSMIKGYALSLHVNDALRVFHQMGVVYKC 307

Query: 287 LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVK 346
           LPNSFSYDYL+HGLCAQGRT NAREL DEMK KGFV S+KS+NSLV+ALAL GEV E V 
Sbjct: 308 LPNSFSYDYLVHGLCAQGRTNNARELFDEMKEKGFVLSNKSFNSLVNALALGGEVGEAVN 367

Query: 347 NLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED 406
            LWEMI+K R VD ITY+TVLDEICR+GR GEA  LLKE Q K+L+DG TY +LL VLED
Sbjct: 368 YLWEMIDKHRSVDLITYKTVLDEICRQGRIGEATSLLKEWQEKDLVDGITYRELLHVLED 427

Query: 407 DFGNS 411
           DFGNS
Sbjct: 428 DFGNS 432

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449520100|ref|XP_004167072.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucumis sativus]

 Score =  543 bits (1398), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 267/397 (67%), Positives = 320/397 (80%), Gaps = 6/397 (1%)

Query: 17  RTFNKHLCCTNSSHNSKTLSNYYLSQTQINPH--LKLSSNAILCSCYSAIALSRSSSRGV 74
           R F+ H    N++H+      ++L  +QI+P+    LS    L   YS  A SRS  +  
Sbjct: 33  RRFSIHSWWLNNTHHYNL--PHFLRVSQIHPYSGPNLSFTNFLLKFYSRAAPSRSFRKRA 90

Query: 75  GKRSKADSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFR 134
            KR K+  KP LD+TQF+ AVS++PPRF +EELCNV++LQ DPLVC ELFNWAS+QPRFR
Sbjct: 91  NKRLKSSLKPKLDETQFQLAVSKIPPRFTSEELCNVISLQRDPLVCFELFNWASQQPRFR 150

Query: 135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVY 194
           HD S+Y I  +KLG AKMY+EMD VVNQ LA  S  G+E LYNT+IYFF EARKL+RAV 
Sbjct: 151 HDDSSYEITIKKLGEAKMYEEMDHVVNQALAVSSI-GSETLYNTMIYFFTEARKLTRAVN 209

Query: 195 VFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND-GIEPD 253
           +FK+M+N+RNL CRPSIR+YN+LFTAFLSRG+NTYINH+YMETIRCLF+QMVND GIEPD
Sbjct: 210 IFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNTYINHMYMETIRCLFRQMVNDDGIEPD 269

Query: 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELC 313
           IFSLN MIKGY+LS HVNDALRIFHQMGVVY+ LPNS+SYDYLIHGLCAQ RT NA+ELC
Sbjct: 270 IFSLNCMIKGYVLSLHVNDALRIFHQMGVVYSCLPNSYSYDYLIHGLCAQARTDNAKELC 329

Query: 314 DEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR 373
           +EMK KGFVPSS SYNS+V+ALALNGEVE+ V  LWEMI+ +R  DFITY+TVLDE+CR+
Sbjct: 330 NEMKEKGFVPSSISYNSIVNALALNGEVEDAVNYLWEMIDNRRSPDFITYKTVLDELCRQ 389

Query: 374 GRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGN 410
           G+  EA  LL+ELQ K+L+DG+TY KLL VLEDD+GN
Sbjct: 390 GKVVEATSLLRELQEKDLVDGHTYRKLLYVLEDDYGN 426

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459126|ref|XP_004147297.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Cucumis sativus]

 Score =  541 bits (1395), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 266/397 (67%), Positives = 320/397 (80%), Gaps = 6/397 (1%)

Query: 17  RTFNKHLCCTNSSHNSKTLSNYYLSQTQINPH--LKLSSNAILCSCYSAIALSRSSSRGV 74
           R F+ H    N++H+      ++L  +QI+P+    LS    L   YS  A SRS  +  
Sbjct: 33  RRFSIHSWWLNNTHHYNL--PHFLRVSQIHPYSGPNLSFTNFLLKFYSRAAPSRSFRKRA 90

Query: 75  GKRSKADSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFR 134
            KR K+  KP LD+TQF+ AVS++PPRF +EELCNV++LQ DPLVC ELFNWAS+QPRFR
Sbjct: 91  NKRLKSSLKPKLDETQFQLAVSKIPPRFTSEELCNVISLQRDPLVCFELFNWASQQPRFR 150

Query: 135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVY 194
           HD S+Y I  +KLG AKMY+EMD VVNQ LA  S  G+E LYNT+IYFF EARKL+RAV 
Sbjct: 151 HDDSSYEITIKKLGEAKMYEEMDHVVNQALAVSSI-GSETLYNTMIYFFTEARKLTRAVN 209

Query: 195 VFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND-GIEPD 253
           +FK+M+N+RNL CRPSIR+YN+LFTAFLSRG+NTYINH+YMETIRCLF+QMVND GIEPD
Sbjct: 210 IFKHMQNNRNLNCRPSIRTYNLLFTAFLSRGRNTYINHMYMETIRCLFRQMVNDDGIEPD 269

Query: 254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELC 313
           IFSLN MIKGY+LS HVNDALRIFHQMGVVY+ LPNS+S+DYLIHGLCAQ RT NA+ELC
Sbjct: 270 IFSLNCMIKGYVLSLHVNDALRIFHQMGVVYSCLPNSYSFDYLIHGLCAQARTDNAKELC 329

Query: 314 DEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR 373
           +EMK KGFVPSS SYNS+V+ALALNGEVE+ V  LWEMI+ +R  DFITY+TVLDE+CR+
Sbjct: 330 NEMKEKGFVPSSISYNSIVNALALNGEVEDAVNYLWEMIDNRRSPDFITYKTVLDELCRQ 389

Query: 374 GRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGN 410
           G+  EA  LL+ELQ K+L+DG+TY KLL VLEDD+GN
Sbjct: 390 GKVVEATSLLRELQEKDLVDGHTYRKLLYVLEDDYGN 426

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570807|ref|XP_002526356.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223534315|gb|EEF36027.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  507 bits (1305), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 265/425 (62%), Positives = 308/425 (72%), Gaps = 49/425 (11%)

Query: 7   RNWLRQIFSHRTFNKHLCCT---------NSSHNSKTLSNYYLSQTQINPHLKLSSNAIL 57
           R +L QI+S   F  +   +         NS+ NS   +N  L+QTQ +P     S+AI 
Sbjct: 6   RYFLTQIYSKFYFPNYPSVSYHSRSYHLLNSTVNSLKFTNV-LAQTQTSPGSNCHSSAIF 64

Query: 58  CSC--------YSAIALSRSSSRGVGKRSKADSKPALDDTQFRCAVSELPPRFNNEELCN 109
             C        YS   LSRS  R   KR +A  KP LD  +F+ ++S+LPPRF+NEELCN
Sbjct: 65  SYCFRGFLLSLYSTKPLSRSFRRRQSKRLRASKKPVLDQAKFQESISQLPPRFSNEELCN 124

Query: 110 VMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF 169
           V+TLQEDPL                           KLGAAKMYQEMDDVVNQ+LA P  
Sbjct: 125 VLTLQEDPL---------------------------KLGAAKMYQEMDDVVNQVLAVPHI 157

Query: 170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTY 229
            G EALYNTIIYFF EARKL+RAV +FK+M+NSRNL+ RPSIR+YN LFTA LSRG+N+Y
Sbjct: 158 -GNEALYNTIIYFFTEARKLTRAVNIFKHMRNSRNLDYRPSIRTYNSLFTAMLSRGRNSY 216

Query: 230 INHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN 289
           IN++YMETIRCLFKQMVNDGIEPDI+SLNSMIKGYILSNHVNDALRIFHQMG VYN  PN
Sbjct: 217 INYMYMETIRCLFKQMVNDGIEPDIYSLNSMIKGYILSNHVNDALRIFHQMGTVYNCAPN 276

Query: 290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLW 349
           SFSYDYLIHGLC QGRT+NAREL D+M++KGFV SS+SYNSLV+ALALNGE+EE V   W
Sbjct: 277 SFSYDYLIHGLCVQGRTQNARELYDDMEKKGFVLSSRSYNSLVNALALNGEIEEAVNYFW 336

Query: 350 EMIEKQRPVDFITYRTVLDEICRR---GRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED 406
           EM  KQ+  DFITYRT+LDE CRR   G AGEAM+LLKE + K L+DG+TY KLLDVLED
Sbjct: 337 EMTRKQKSPDFITYRTILDETCRRGSGGEAGEAMRLLKEWEQKGLVDGHTYKKLLDVLED 396

Query: 407 DFGNS 411
           DFG+S
Sbjct: 397 DFGSS 401

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472349|ref|XP_003606459.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355507514|gb|AES88656.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  489 bits (1260), Expect = e-136,   Method: Compositional matrix adjust.
 Identities = 240/332 (72%), Positives = 278/332 (83%), Gaps = 3/332 (0%)

Query: 82  SKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYH 141
           +KP LD  +F+ A S+L PRF  EEL NV+  Q DPLVCLELF+WAS QPRFRH+ S++H
Sbjct: 75  NKPVLDQEKFQFAQSQLLPRFTPEELRNVIANQRDPLVCLELFHWASHQPRFRHNESSFH 134

Query: 142 IMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKN 201
           +  +KLG AKMYQEMDDVVNQ+LA  S  G EAL+N IIY+F EARKL+RAV VFK+MK 
Sbjct: 135 VTIKKLGDAKMYQEMDDVVNQLLAVRSI-GNEALFNMIIYYFTEARKLTRAVIVFKHMKC 193

Query: 202 SRN--LECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS 259
           SRN     RPSIR+YNILF AFLSRG NT+IN VYMET+RCLF+QMVN+ IEPDIFSLNS
Sbjct: 194 SRNPNFGFRPSIRTYNILFGAFLSRGYNTHINLVYMETMRCLFRQMVNEHIEPDIFSLNS 253

Query: 260 MIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK 319
           MIKGY+LS HVNDALRIFHQMGVVY+  PNS +YDYLIHGLCA+GRT+NA+EL  EMK K
Sbjct: 254 MIKGYVLSLHVNDALRIFHQMGVVYDCKPNSLTYDYLIHGLCAKGRTENAKELYHEMKAK 313

Query: 320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEA 379
           GFVPSSKSYNSLV++LAL G+VEE V  LWEM EKQ+ VDFITYRTVLDEICRRGR  EA
Sbjct: 314 GFVPSSKSYNSLVNSLALVGDVEEAVNYLWEMTEKQKSVDFITYRTVLDEICRRGRVQEA 373

Query: 380 MKLLKELQNKNLIDGYTYTKLLDVLEDDFGNS 411
           M+ L+ELQ K+L+DG+TY KLL VLEDD+G+S
Sbjct: 374 MRFLQELQEKDLVDGHTYRKLLYVLEDDYGDS 405

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544625|ref|XP_003540749.1| PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Glycine max]

 Score =  462 bits (1188), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 231/360 (64%), Positives = 267/360 (74%), Gaps = 30/360 (8%)

Query: 55  AILCSCYSAIALSRSSSRGVGKRSKADSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQ 114
           A   S YS  A SRS  R   KR    SKP LD  QF+ A+S+LPPRF  EELCNV+  Q
Sbjct: 81  APFNSHYSTKAPSRSYQRRARKRLLKSSKPTLDQAQFQLALSQLPPRFTPEELCNVIARQ 140

Query: 115 EDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEA 174
            DPL                           KLGAAKMYQEMDD+VNQ+LA P   G+EA
Sbjct: 141 NDPL---------------------------KLGAAKMYQEMDDIVNQLLAVP-LIGSEA 172

Query: 175 LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLEC--RPSIRSYNILFTAFLSRGKNTYINH 232
           L+N +IY+F +ARKL+RAV VFK+MK+ RNL C  RPSIR+YNILF AFL RG N+YINH
Sbjct: 173 LFNMVIYYFTQARKLTRAVNVFKHMKSRRNLNCFFRPSIRTYNILFAAFLGRGSNSYINH 232

Query: 233 VYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS 292
           VYMETIRCLF+QMV DGI+PDIFSLNSMIKGY+LS HVNDALRIFHQMGV+Y+  PN+ +
Sbjct: 233 VYMETIRCLFRQMVKDGIKPDIFSLNSMIKGYVLSLHVNDALRIFHQMGVIYDCPPNALT 292

Query: 293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMI 352
           YD LIHGLCAQGRT NA+EL  EMK KGFVPSSKSYNSLV++LAL GE+EE V  LWEM 
Sbjct: 293 YDCLIHGLCAQGRTNNAKELYSEMKTKGFVPSSKSYNSLVNSLALGGEIEEAVNYLWEMT 352

Query: 353 EKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGNSI 412
           +KQR  DFITY+TVLDEICRRG   E  + L+ELQ K+L+DG+ Y KLL VLEDD+GNS+
Sbjct: 353 DKQRSADFITYKTVLDEICRRGTVQEGTRFLQELQEKDLVDGHAYRKLLYVLEDDYGNSV 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145360404|ref|NP_180348.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546772|sp|Q9ZUY1.2|PP173_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27800, mitochondrial; Flags: Precursor gi|330252952|gb|AEC08046.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 213/348 (61%), Positives = 272/348 (78%), Gaps = 1/348 (0%)

Query: 61  YSAIALSRSSSRGVGKRSKADSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVC 120
           YS    +RS  R +  R K+ +KP L+ ++F   +S+LPPRF  EEL + +TL+EDP +C
Sbjct: 96  YSTSVPTRSLRRRISNRKKSSAKPILNVSKFHETISKLPPRFTPEELADAITLEEDPFLC 155

Query: 121 LELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII 180
             LFNWAS+QPRF H+  +YHI  RKLGAAKMYQEMDD+VNQ+L+     G E LYN+II
Sbjct: 156 FHLFNWASQQPRFTHENCSYHIAIRKLGAAKMYQEMDDIVNQVLSV-RHIGNENLYNSII 214

Query: 181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRC 240
           ++F +A KL RAV +F++M  S+NLECRP+IR+Y+ILF A L RG N+YINHVYMET+R 
Sbjct: 215 FYFTKAGKLIRAVNIFRHMVTSKNLECRPTIRTYHILFKALLGRGNNSYINHVYMETVRS 274

Query: 241 LFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGL 300
           LF+QMV+ GIEPD+F+LN ++KGY+LS HVNDALRIFHQM VVY+  PNSF+YDYLIHGL
Sbjct: 275 LFRQMVDSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGL 334

Query: 301 CAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF 360
           CAQGRT NAREL  EMK KGFVP+ KSYNSLV+A AL+GE+++ VK LWEMIE  R VDF
Sbjct: 335 CAQGRTINARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENGRVVDF 394

Query: 361 ITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDF 408
           I+YRT++DE CR+G+  EA +LL+ L+ K L+D  +Y KL++VL  D 
Sbjct: 395 ISYRTLVDESCRKGKYDEATRLLEMLREKQLVDRDSYDKLVNVLHKDL 442

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478687|ref|XP_002282154.2| PREDICTED: pentatricopeptide repeat-containing protein At2g27800, mitochondrial-like [Vitis vinifera]

 Score =  457 bits (1177), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 231/362 (63%), Positives = 273/362 (75%), Gaps = 35/362 (9%)

Query: 58  CSCYSAIALSRSSSRGVGKRSKADSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDP 117
           CS YS+ A  RS  +   KR KA++KP L++ QF  A+SEL PRF+  ELC V+ LQEDP
Sbjct: 25  CS-YSSGAF-RSFKKRARKRLKANAKPCLNEAQFHQAISELLPRFSAGELCEVLNLQEDP 82

Query: 118 LVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYN 177
           +                           KLG  K+YQEMDDVVNQ+L+ P+  G+EALY 
Sbjct: 83  I---------------------------KLGTTKLYQEMDDVVNQLLSEPNI-GSEALYT 114

Query: 178 TIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMET 237
           TIIYF  EARKL+RA  +FK+M++  NL+CRPSIR+YN+LF AFLSR  ++YINH+YM T
Sbjct: 115 TIIYFLTEARKLTRAAIIFKHMRSCSNLDCRPSIRTYNLLFAAFLSRRSDSYINHMYMAT 174

Query: 238 IRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLI 297
           IRCLFKQMVNDGIEPD+FSLNSMI+GY+LS HVNDALRIFHQMGVVYN LPNS SYDYLI
Sbjct: 175 IRCLFKQMVNDGIEPDVFSLNSMIEGYVLSLHVNDALRIFHQMGVVYNCLPNSHSYDYLI 234

Query: 298 HGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRP 357
           HGLCAQ RT NAR+LC+EMK KGFVPSSKSYNSLV+ALAL GEV+E V  LWEM EKQR 
Sbjct: 235 HGLCAQDRTNNARKLCNEMKGKGFVPSSKSYNSLVNALALCGEVDEAVNYLWEMTEKQRS 294

Query: 358 VDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFG-----NSI 412
            DFITY+TVLD+ICR+GR  +AM LLKELQ K+L+DG+TY KLL +LE +FG     N  
Sbjct: 295 ADFITYQTVLDQICRQGRTQDAMSLLKELQVKDLLDGHTYQKLLSLLEQEFGKLNNQNQF 354

Query: 413 RH 414
           RH
Sbjct: 355 RH 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|3860252|gb|AAC73020.1| hypothetical protein [Arabidopsis thaliana]

 Score =  456 bits (1174), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 211/342 (61%), Positives = 270/342 (78%), Gaps = 1/342 (0%)

Query: 67  SRSSSRGVGKRSKADSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNW 126
           +RS  R +  R K+ +KP L+ ++F   +S+LPPRF  EEL + +TL+EDP +C  LFNW
Sbjct: 87  TRSLRRRISNRKKSSAKPILNVSKFHETISKLPPRFTPEELADAITLEEDPFLCFHLFNW 146

Query: 127 ASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA 186
           AS+QPRF H+  +YHI  RKLGAAKMYQEMDD+VNQ+L+     G E LYN+II++F +A
Sbjct: 147 ASQQPRFTHENCSYHIAIRKLGAAKMYQEMDDIVNQVLSV-RHIGNENLYNSIIFYFTKA 205

Query: 187 RKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV 246
            KL RAV +F++M  S+NLECRP+IR+Y+ILF A L RG N+YINHVYMET+R LF+QMV
Sbjct: 206 GKLIRAVNIFRHMVTSKNLECRPTIRTYHILFKALLGRGNNSYINHVYMETVRSLFRQMV 265

Query: 247 NDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRT 306
           + GIEPD+F+LN ++KGY+LS HVNDALRIFHQM VVY+  PNSF+YDYLIHGLCAQGRT
Sbjct: 266 DSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRT 325

Query: 307 KNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTV 366
            NAREL  EMK KGFVP+ KSYNSLV+A AL+GE+++ VK LWEMIE  R VDFI+YRT+
Sbjct: 326 INARELLSEMKGKGFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENGRVVDFISYRTL 385

Query: 367 LDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDF 408
           +DE CR+G+  EA +LL+ L+ K L+D  +Y KL++VL  D 
Sbjct: 386 VDESCRKGKYDEATRLLEMLREKQLVDRDSYDKLVNVLHKDL 427

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297822503|ref|XP_002879134.1| hypothetical protein ARALYDRAFT_481728 [Arabidopsis lyrata subsp. lyrata] gi|297324973|gb|EFH55393.1| hypothetical protein ARALYDRAFT_481728 [Arabidopsis lyrata subsp. lyrata]

 Score =  453 bits (1166), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 209/348 (60%), Positives = 271/348 (77%), Gaps = 1/348 (0%)

Query: 61  YSAIALSRSSSRGVGKRSKADSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVC 120
           YS    +RS  R +  R K+ +KP L++ +F+  +++LPPRF  EEL + +TL+EDP +C
Sbjct: 90  YSTSVPTRSLRRRISNRKKSSTKPVLNEFKFQETITKLPPRFTPEELADAITLEEDPFLC 149

Query: 121 LELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII 180
             LFNWAS+QPRF+H   +YHI  RKLGAAKMY+EMDD+VNQ+L+     G E LYN+II
Sbjct: 150 FHLFNWASQQPRFKHVNCSYHIAIRKLGAAKMYKEMDDIVNQVLSV-RHIGNENLYNSII 208

Query: 181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRC 240
           ++F +A KL RAV +F++M  S NLECRP+IR+Y+ILF A L RG N+Y +H+YMET+R 
Sbjct: 209 FYFTKAGKLIRAVNIFRHMVTSMNLECRPTIRTYHILFKALLGRGNNSYTSHMYMETVRS 268

Query: 241 LFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGL 300
           LF+QMV+ GIEPD+F+LN ++KGY+LS HVNDALRIFHQM VVYN  PNSF+YDYLIHGL
Sbjct: 269 LFRQMVDSGIEPDVFALNCLVKGYVLSLHVNDALRIFHQMSVVYNCQPNSFTYDYLIHGL 328

Query: 301 CAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF 360
           CAQGRT NAREL +EMK KGFVP+ KSYNSLV+A AL GE+++ VK LWEMIE  R VDF
Sbjct: 329 CAQGRTINARELLNEMKGKGFVPNGKSYNSLVNAFALTGEIDDAVKCLWEMIENGRVVDF 388

Query: 361 ITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDF 408
           ITYRT++DE CR+G+  EA ++L+ L+ K L+D  +Y KL++VL  D 
Sbjct: 389 ITYRTLVDESCRKGKYDEATRVLERLREKQLVDRDSYEKLVNVLHKDL 436

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	417
TAIR|locus:2042057	442	AT2G27800 [Arabidopsis thalian	0.784	0.739	0.628	2.9e-112
TAIR|locus:2090220	379	AT3G25210 "AT3G25210" [Arabido	0.743	0.817	0.314	1.6e-45
TAIR|locus:2146410	575	AT5G27300 "AT5G27300" [Arabido	0.446	0.323	0.4	3.9e-31
TAIR|locus:2009620	471	AT1G53330 [Arabidopsis thalian	0.690	0.611	0.293	7.8e-27
TAIR|locus:2009787	806	AT1G30290 "AT1G30290" [Arabido	0.707	0.366	0.280	1.9e-22
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.575	0.321	0.290	1.4e-21
TAIR|locus:2049756	757	AT2G37230 [Arabidopsis thalian	0.719	0.396	0.263	1.4e-21
TAIR|locus:2125152	1110	AT4G01400 "AT4G01400" [Arabido	0.664	0.249	0.278	1.5e-21
TAIR|locus:2095309	687	AT3G09060 "AT3G09060" [Arabido	0.714	0.433	0.257	8.7e-21
TAIR|locus:504955997	626	AT2G17525 [Arabidopsis thalian	0.647	0.431	0.243	9.2e-21

TAIR|locus:2042057 AT2G27800 [Arabidopsis thaliana (taxid:3702)]

 Score = 1108 (395.1 bits), Expect = 2.9e-112, P = 2.9e-112
 Identities = 206/328 (62%), Positives = 263/328 (80%)

Query:    80 ADSKPALDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDAST 139
             + +KP L+ ++F   +S+LPPRF  EEL + +TL+EDP +C  LFNWAS+QPRF H+  +
Sbjct:   115 SSAKPILNVSKFHETISKLPPRFTPEELADAITLEEDPFLCFHLFNWASQQPRFTHENCS 174

Query:   140 YHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYM 199
             YHI  RKLGAAKMYQEMDD+VNQ+L+     G E LYN+II++F +A KL RAV +F++M
Sbjct:   175 YHIAIRKLGAAKMYQEMDDIVNQVLSVRHI-GNENLYNSIIFYFTKAGKLIRAVNIFRHM 233

Query:   200 KNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS 259
               S+NLECRP+IR+Y+ILF A L RG N+YINHVYMET+R LF+QMV+ GIEPD+F+LN 
Sbjct:   234 VTSKNLECRPTIRTYHILFKALLGRGNNSYINHVYMETVRSLFRQMVDSGIEPDVFALNC 293

Query:   260 MIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK 319
             ++KGY+LS HVNDALRIFHQM VVY+  PNSF+YDYLIHGLCAQGRT NAREL  EMK K
Sbjct:   294 LVKGYVLSLHVNDALRIFHQMSVVYDCEPNSFTYDYLIHGLCAQGRTINARELLSEMKGK 353

Query:   320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEA 379
             GFVP+ KSYNSLV+A AL+GE+++ VK LWEMIE  R VDFI+YRT++DE CR+G+  EA
Sbjct:   354 GFVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENGRVVDFISYRTLVDESCRKGKYDEA 413

Query:   380 MKLLKELQNKNLIDGYTYTKLLDVLEDD 407
              +LL+ L+ K L+D  +Y KL++VL  D
Sbjct:   414 TRLLEMLREKQLVDRDSYDKLVNVLHKD 441

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2090220 AT3G25210 "AT3G25210" [Arabidopsis thaliana (taxid:3702)]

 Score = 478 (173.3 bits), Expect = 1.6e-45, P = 1.6e-45
 Identities = 100/318 (31%), Positives = 177/318 (55%)

Query:    88 DTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKL 147
             +TQF   +  L P F N ++   +  Q DP + L++F W ++Q  ++H+   YH M ++ 
Sbjct:    59 ETQFETWIQNLKPGFTNSDVVIALRAQSDPDLALDIFRWTAQQRGYKHNHEAYHTMIKQA 118

Query:   148 GAAKMYQEMDDVVNQMLATPSFCGTEA-LYNTIIYFFAEARKL-SRAVYVFKYMKNSRNL 205
                K    ++ ++ +++A    C     LYN II F    + L +RA  V  Y K  R+ 
Sbjct:   119 ITGKRNNFVETLIEEVIA--GACEMSVPLYNCIIRFCCGRKFLFNRAFDV--YNKMLRSD 174

Query:   206 ECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYI 265
             + +P + +Y +L ++ L R     + +VY+  +R L KQM ++G+ PD F LN +IK Y 
Sbjct:   175 DSKPDLETYTLLLSSLLKRFNKLNVCYVYLHAVRSLTKQMKSNGVIPDTFVLNMIIKAYA 234

Query:   266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS 325
                 V++A+R+F +M + Y   PN+++Y YL+ G+C +GR         EM+ KG VP+ 
Sbjct:   235 KCLEVDEAIRVFKEMAL-YGSEPNAYTYSYLVKGVCEKGRVGQGLGFYKEMQVKGMVPNG 293

Query:   326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKE 385
               Y  L+ +L++   ++E V+ +++M+      D +TY TVL E+CR GR  EA+++++E
Sbjct:   294 SCYMVLICSLSMERRLDEAVEVVYDMLANSLSPDMLTYNTVLTELCRGGRGSEALEMVEE 353

Query:   386 LQNKNLIDGY-TYTKLLD 402
              + ++ + G   Y  L+D
Sbjct:   354 WKKRDPVMGERNYRTLMD 371

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2146410 AT5G27300 "AT5G27300" [Arabidopsis thaliana (taxid:3702)]

 Score = 347 (127.2 bits), Expect = 3.9e-31, P = 3.9e-31
 Identities = 78/195 (40%), Positives = 115/195 (58%)

Query:   167 PSFCGTEALYNTIIYFFAEAR--KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR 224
             P F      Y+  I     A+  KL RAV +F++M NSRNLECRP++R+Y+ILF A L R
Sbjct:   159 PRFTHENCSYHIAIRKLGAAKSGKLIRAVNIFRHMVNSRNLECRPTMRTYHILFKALLGR 218

Query:   225 GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY 284
             G N++INH+YMET+R LF+QMV+ GIEPD+F+LN ++KG  ++    + L      G   
Sbjct:   219 GNNSFINHLYMETVRSLFRQMVDSGIEPDVFALNCLVKGRTINTR--ELLSEMKGKG--- 273

Query:   285 NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEET 344
              ++PN  SY+ L++     G   +A +   EM   G V    SY +LV      G+ +E 
Sbjct:   274 -FVPNGKSYNSLVNAFALSGEIDDAVKCLWEMIENGRVVDFISYRTLVDESCRKGKYDEA 332

Query:   345 VKNLWEMIEKQRPVD 359
              + L EM+ +++ VD
Sbjct:   333 TR-LLEMLREKQLVD 346

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2009620 AT1G53330 [Arabidopsis thaliana (taxid:3702)]

 Score = 304 (112.1 bits), Expect = 7.8e-27, P = 7.8e-27
 Identities = 91/310 (29%), Positives = 151/310 (48%)

Query:   107 LCNVMTLQEDPLVCLELF---NWASKQPR--FRHDASTYHIMTRKLGAAKMYQEMDDVVN 161
             L +++  + DP   ++LF   +  S  P+  FR+    Y I+  KLG +KM+ E+D V+ 
Sbjct:    12 LASLLRRENDPSAAMKLFRNPDPESTNPKRPFRYSLLCYDIIITKLGGSKMFDELDQVLL 71

Query:   162 QMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAF 221
              +        TE ++  +I FF   +  SRA+++F  M   R   C+ +++S N L +A 
Sbjct:    72 HLKTDTRIVPTEIIFCNVINFFGRGKLPSRALHMFDEMPQYR---CQRTVKSLNSLLSAL 128

Query:   222 LSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMG 281
             L  G+        +E ++     +   G +PD  + N +I G   S   +DAL++F +M 
Sbjct:   129 LKCGE--------LEKMKERLSSIDEFG-KPDACTYNILIHGCSQSGCFDDALKLFDEM- 178

Query:   282 VVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEM-KRKGFVPSSKSYNSLVSALALNGE 340
             V     P   ++  LIHGLC   R K A ++  +M K  G  P+   Y SL+ AL   GE
Sbjct:   179 VKKKVKPTGVTFGTLIHGLCKDSRVKEALKMKHDMLKVYGVRPTVHIYASLIKALCQIGE 238

Query:   341 VEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI-DGYTYTK 399
             +    K   E  E +  VD   Y T++  + + GR+ E   +L+E+  K    D  TY  
Sbjct:   239 LSFAFKLKDEAYEGKIKVDAAIYSTLISSLIKAGRSNEVSMILEEMSEKGCKPDTVTYNV 298

Query:   400 LLD--VLEDD 407
             L++   +E+D
Sbjct:   299 LINGFCVEND 308

GO:0005739 "mitochondrion" evidence=ISM

GO:0009790 "embryo development" evidence=IMP

GO:0010154 "fruit development" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

TAIR|locus:2009787 AT1G30290 "AT1G30290" [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 1.9e-22, P = 1.9e-22
 Identities = 89/317 (28%), Positives = 150/317 (47%)

Query:    90 QFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGA 149
             Q R  +  L P     ++C V+  Q+D  V L+ F WA +Q R+RHD   Y+ M   L  
Sbjct:   164 QMRNLLRSLKP----SQVCAVLRSQDDERVALKFFYWADRQWRYRHDPMVYYSMLEVLSK 219

Query:   150 AKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP 209
              K+ Q    V+  M     +   EA ++ ++  ++ A +L  A+ V   M+ +  +E  P
Sbjct:   220 TKLCQGSRRVLVLMKRRGIYRTPEA-FSRVMVSYSRAGQLRDALKVLTLMQRA-GVE--P 275

Query:   210 SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH 269
             ++   N     F+   +         + +R L +  V  GI P++ + N MI+GY   + 
Sbjct:   276 NLLICNTTIDVFVRANR-------LEKALRFLERMQVV-GIVPNVVTYNCMIRGYCDLHR 327

Query:   270 VNDALRIFHQMGVVYNYLPNSFSYDYLIHG-LCAQGRTKNARELCDEM-KRKGFVPSSKS 327
             V +A+ +   M      LP+  SY Y I G LC + R    R+L  +M K  G VP   +
Sbjct:   328 VEEAIELLEDMHSK-GCLPDKVSY-YTIMGYLCKEKRIVEVRDLMKKMAKEHGLVPDQVT 385

Query:   328 YNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQ 387
             YN+L+  L  +   +E +  L +  EK   +D + Y  ++  +C+ GR  EA  L+ E+ 
Sbjct:   386 YNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHALCKEGRMSEAKDLINEML 445

Query:   388 NKNLI--DGYTYTKLLD 402
             +K     D  TYT +++
Sbjct:   446 SKGHCPPDVVTYTAVVN 462

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 74/255 (29%), Positives = 130/255 (50%)

Query:   149 AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECR 208
             A  M + M+  ++QM      C  E  Y T++  F++   ++ A  V + M N       
Sbjct:   358 AGNMNRAME-FLDQMRVR-GLCPNERTYTTLVDGFSQKGYMNEAYRVLREM-NDNGFS-- 412

Query:   209 PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN 268
             PS+ +YN L       GK        ME    + + M   G+ PD+ S ++++ G+  S 
Sbjct:   413 PSVVTYNALINGHCVTGK--------MEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRSY 464

Query:   269 HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY 328
              V++ALR+  +M V     P++ +Y  LI G C Q RTK A +L +EM R G  P   +Y
Sbjct:   465 DVDEALRVKREM-VEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTY 523

Query:   329 NSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKEL-Q 387
              +L++A  + G++E+ ++   EM+EK    D +TY  +++ + ++ R  EA +LL +L  
Sbjct:   524 TALINAYCMEGDLEKALQLHNEMVEKGVLPDVVTYSVLINGLNKQSRTREAKRLLLKLFY 583

Query:   388 NKNLIDGYTYTKLLD 402
              +++    TY  L++
Sbjct:   584 EESVPSDVTYHTLIE 598

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2049756 AT2G37230 [Arabidopsis thaliana (taxid:3702)]

 Score = 276 (102.2 bits), Expect = 1.4e-21, P = 1.4e-21
 Identities = 83/315 (26%), Positives = 145/315 (46%)

Query:    89 TQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLG 148
             T+ + ++ +L P +++  + NV+   +     L+ F W  +    RHD  T+  M + LG
Sbjct:   102 TRLQNSIRDLVPEWDHSLVYNVLHGAKKLEHALQFFRWTERSGLIRHDRDTHMKMIKMLG 161

Query:   149 AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECR 208
                       ++  M         E ++  +I  + +A  +  +V +F+ MK+   L   
Sbjct:   162 EVSKLNHARCILLDM-PEKGVPWDEDMFVVLIESYGKAGIVQESVKIFQKMKD---LGVE 217

Query:   209 PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN 268
              +I+SYN LF   L RG+       YM   R  F +MV++G+EP   + N M+ G+ LS 
Sbjct:   218 RTIKSYNSLFKVILRRGR-------YMMAKR-YFNKMVSEGVEPTRHTYNLMLWGFFLSL 269

Query:   269 HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY 328
              +  ALR F  M       P+  +++ +I+G C   +   A +L  EMK     PS  SY
Sbjct:   270 RLETALRFFEDMKT-RGISPDDATFNTMINGFCRFKKMDEAEKLFVEMKGNKIGPSVVSY 328

Query:   329 NSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN 388
              +++        V++ ++   EM       +  TY T+L  +C  G+  EA  +LK +  
Sbjct:   329 TTMIKGYLAVDRVDDGLRIFEEMRSSGIEPNATTYSTLLPGLCDAGKMVEAKNILKNMMA 388

Query:   389 KNLI--DGYTYTKLL 401
             K++   D   + KLL
Sbjct:   389 KHIAPKDNSIFLKLL 403

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

TAIR|locus:2125152 AT4G01400 "AT4G01400" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 1.5e-21, P = 1.5e-21
 Identities = 83/298 (27%), Positives = 150/298 (50%)

Query:   114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTE 173
             Q DPL+  E+F++AS+QP FRH  S++ I+  KLG  + +  +DDV+ +  ++  +  T 
Sbjct:    61 QSDPLLAKEIFDYASQQPNFRHSRSSHLILILKLGRGRYFNLIDDVLAKHRSS-GYPLTG 119

Query:   174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS-RGKNTYINH 232
              ++  +I  +AEA+   + +  F Y     N   +P  +  N +    +S RG       
Sbjct:   120 EIFTYLIKVYAEAKLPEKVLSTF-YKMLEFNFTPQP--KHLNRILDVLVSHRG------- 169

Query:   233 VYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS 292
              Y++    LFK     G+ P+  S N +++ + L++ ++ A ++F +M +  + +P+  S
Sbjct:   170 -YLQKAFELFKSSRLHGVMPNTRSYNLLMQAFCLNDDLSIAYQLFGKM-LERDVVPDVDS 227

Query:   293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMI 352
             Y  LI G C +G+   A EL D+M  KGFVP      +L+  L   G  +E  K L EMI
Sbjct:   228 YKILIQGFCRKGQVNGAMELLDDMLNKGFVPD----RTLIGGLCDQGMFDEGKKYLEEMI 283

Query:   353 EKQRPVDFITYRTVLDEICRRGRAGEAMKLLKE-LQNKNLIDGYTYTKLLDVL--EDD 407
              K     F     ++   C  G+  EA  +++  ++N   +   T+  ++ ++  ED+
Sbjct:   284 SKGFSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVIPLICNEDE 341

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005829 "cytosol" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2095309 AT3G09060 "AT3G09060" [Arabidopsis thaliana (taxid:3702)]

 Score = 269 (99.8 bits), Expect = 8.7e-21, P = 8.7e-21
 Identities = 81/315 (25%), Positives = 145/315 (46%)

Query:    99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDD 158
             P   + + +  ++  +++P     LF+ A++ P + H A  YH + R+L   +M   +  
Sbjct:     5 PKSLSPKHVLKLLKSEKNPRAAFALFDSATRHPGYAHSAVVYHHILRRLSETRMVNHVSR 64

Query:   159 VVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILF 218
             +V  + +    C  +   + +I  + +     +A+ VFK M+      C P+IRSYN L 
Sbjct:    65 IVELIRSQECKCDEDVALS-VIKTYGKNSMPDQALDVFKRMREI--FGCEPAIRSYNTLL 121

Query:   219 TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFH 278
              AF+   +      V +E+   LF      G+ P++ + N +IK          A R F 
Sbjct:   122 NAFVEAKQ-----WVKVES---LFAYFETAGVAPNLQTYNVLIKMSCKKKEFEKA-RGFL 172

Query:   279 QMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN 338
                    + P+ FSY  +I+ L   G+  +A EL DEM  +G  P    YN L+    L 
Sbjct:   173 DWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGF-LK 231

Query:   339 GEVEETVKNLWEMIEKQRPV--DFITYRTVLDEICRRGRAGEAMKLLKEL-QNKNLIDGY 395
              +  +T   LW+ + +   V  +  T+  ++  + + GR  + +K+ + + QN+   D Y
Sbjct:   232 EKDHKTAMELWDRLLEDSSVYPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKDLY 291

Query:   396 TYTKLLDVLEDDFGN 410
             TY+ L+  L  D GN
Sbjct:   292 TYSSLIHGL-CDAGN 305

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:504955997 AT2G17525 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 9.2e-21, P = 9.2e-21
 Identities = 70/288 (24%), Positives = 138/288 (47%)

Query:   103 NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQ 162
             +++ +  ++  Q+     LE F WAS  P F H  STY  +  KL   + +  +  ++++
Sbjct:    42 SDDHIVRLILDQKSASGALETFRWASTFPGFIHSRSTYRALFHKLCVFRRFDTVYQLLDE 101

Query:   163 MLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFL 222
             M  +      +A++ TII  F  AR + R + V   +        +PS++ +N +    +
Sbjct:   102 MPDSIGLPPDDAIFVTIIRGFGRARLIKRVISVVDLVSK---FGIKPSLKVFNSILDVLV 158

Query:   223 SRGKNTYINHVYMETIRCLF-KQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMG 281
                         ++  R  F ++M+  GI  D+++   ++KG  L+N + D  ++  Q+ 
Sbjct:   159 KED---------IDIAREFFTRKMMASGIHGDVYTYGILMKGLSLTNRIGDGFKLL-QIM 208

Query:   282 VVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV 341
                   PN+  Y+ L+H LC  G+   AR L  EMK     P+  ++N L+SA     ++
Sbjct:   209 KTSGVAPNAVVYNTLLHALCKNGKVGRARSLMSEMKE----PNDVTFNILISAYCNEQKL 264

Query:   342 EETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK 389
              +++  L +        D +T   V++ +C  GR  EA+++L+ +++K
Sbjct:   265 IQSMVLLEKCFSLGFVPDVVTVTKVMEVLCNEGRVSEALEVLERVESK 312

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9ZUY1	PP173_ARATH	No assigned EC number	0.6120	0.8321	0.7850	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	417
pfam13041	50	pfam13041, PPR_2, PPR repeat family	7e-11
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-09
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	8e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	4e-06
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	4e-06
pfam12854	34	pfam12854, PPR_1, PPR repeat	5e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	7e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	9e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-04
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-04
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-04
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	7e-04
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.002
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.004

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 56.6 bits (138), Expect = 7e-11
 Identities = 17/49 (34%), Positives = 31/49 (63%)

Query: 288 PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALA 336
           P+  +Y+ LI G C +G+ + A +L +EMK++G  P+  +Y+ L+  L 
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 52.0 bits (126), Expect = 3e-09
 Identities = 19/50 (38%), Positives = 30/50 (60%), Gaps = 1/50 (2%)

Query: 252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLC 301
           PD+ + N++I GY     V +AL++F++M       PN ++Y  LI GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEM-KKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 34/136 (25%), Positives = 56/136 (41%), Gaps = 11/136 (8%)

Query: 207 CRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL 266
               + S+NIL T +++ GK              LF +MV  G+ PD  +  S++     
Sbjct: 550 HEKDVVSWNILLTGYVAHGKG--------SMAVELFNRMVESGVNPDEVTFISLLCACSR 601

Query: 267 SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK 326
           S  V   L  FH M   Y+  PN   Y  ++  L   G+   A    ++M      P   
Sbjct: 602 SGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT---PDPA 658

Query: 327 SYNSLVSALALNGEVE 342
            + +L++A  ++  VE
Sbjct: 659 VWGALLNACRIHRHVE 674

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 45.5 bits (109), Expect = 8e-07
 Identities = 15/56 (26%), Positives = 28/56 (50%), Gaps = 8/56 (14%)

Query: 209 PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGY 264
           P + +YN L   +  +GK        +E    LF +M   GI+P++++ + +I G 
Sbjct: 1   PDVVTYNTLIDGYCKKGK--------VEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 13/46 (28%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 176 YNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAF 221
           YNT+I  + +  K+  A+ +F  MK       +P++ +Y+IL    
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRG---IKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 48.7 bits (116), Expect = 4e-06
 Identities = 72/320 (22%), Positives = 122/320 (38%), Gaps = 32/320 (10%)

Query: 58  CSCYSAIALSRSSSRGVGKRSKAD---SKPA-LDDTQFRCAVSELPPRFNNEELCNVMTL 113
            SC S     +   R   +  + +   SK A LDDTQ R +   L  +      C     
Sbjct: 46  ISCSSVEQGLKPRPRLKPEPIRIEVSESKDARLDDTQIRKSGVSLCSQIEKLVACG--RH 103

Query: 114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTE 173
           +E     LELF        F   ASTY  +     A K  + +  V   + ++  F   +
Sbjct: 104 RE----ALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESS-GFEPDQ 158

Query: 174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHV 233
            + N ++    +   L  A  +F  M   RNL       S+  +    +  G        
Sbjct: 159 YMMNRVLLMHVKCGMLIDARRLFDEMP-ERNL------ASWGTIIGGLVDAGN------- 204

Query: 234 YMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY 293
           Y E    LF++M  DG + +  +   M++          A +  H   +    + ++F  
Sbjct: 205 YREAFA-LFREMWEDGSDAEPRTFVVMLRASAGLGSAR-AGQQLHCCVLKTGVVGDTFVS 262

Query: 294 DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE 353
             LI      G  ++AR + D M  K  V    ++NS+++  AL+G  EE +   +EM +
Sbjct: 263 CALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEALCLYYEMRD 318

Query: 354 KQRPVDFITYRTVLDEICRR 373
               +D  T+  ++  I  R
Sbjct: 319 SGVSIDQFTFSIMI-RIFSR 337

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 39.6 bits (94), Expect = 5e-05
 Identities = 9/33 (27%), Positives = 21/33 (63%)

Query: 248 DGIEPDIFSLNSMIKGYILSNHVNDALRIFHQM 280
            G++PD+ + N++I G   +  V++A+ +  +M
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.4 bits (93), Expect = 7e-05
 Identities = 16/35 (45%), Positives = 20/35 (57%)

Query: 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS 325
            +Y+ LI GLC  GR + A EL  EMK +G  P  
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 39.3 bits (93), Expect = 9e-05
 Identities = 15/33 (45%), Positives = 19/33 (57%)

Query: 285 NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMK 317
              P+  +Y+ LI GLC  GR   A EL DEM+
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 15/50 (30%), Positives = 27/50 (54%)

Query: 323 PSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR 372
           P   +YN+L+      G+VEE +K   EM ++    +  TY  ++D +C+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.9 bits (92), Expect = 2e-04
 Identities = 17/45 (37%), Positives = 31/45 (68%), Gaps = 1/45 (2%)

Query: 361 ITYRTVLDEICRRGRAGEAMKLLKELQNKNLI-DGYTYTKLLDVL 404
           +TY T++D  C++G+  EA+KL  E++ + +  + YTY+ L+D L
Sbjct: 4   VTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 34/145 (23%), Positives = 60/145 (41%), Gaps = 3/145 (2%)

Query: 249 GIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKN 308
           G++ D     ++I     S  V+    +FH+M V      N  ++  LI G    G+   
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEM-VNAGVEANVHTFGALIDGCARAGQVAK 525

Query: 309 ARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPV--DFITYRTV 366
           A      M+ K   P    +N+L+SA   +G V+     L EM  +  P+  D IT   +
Sbjct: 526 AFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGAL 585

Query: 367 LDEICRRGRAGEAMKLLKELQNKNL 391
           +      G+   A ++ + +   N+
Sbjct: 586 MKACANAGQVDRAKEVYQMIHEYNI 610

Length = 1060

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 41.4 bits (97), Expect = 7e-04
 Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 31/187 (16%)

Query: 229 YINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK---------------------GYILS 267
           Y  H Y E   CL+ +M + G+  D F+ + MI+                     G+ L 
Sbjct: 300 YALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLD 359

Query: 268 NHVNDALRIFH-QMGV------VYNYLP--NSFSYDYLIHGLCAQGRTKNARELCDEMKR 318
              N AL   + + G       V++ +P  N  S++ LI G    GR   A E+ + M  
Sbjct: 360 IVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIA 419

Query: 319 KGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQR-PVDFITYRTVLDEICRRGRAG 377
           +G  P+  ++ +++SA   +G  E+  +    M E  R     + Y  +++ + R G   
Sbjct: 420 EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479

Query: 378 EAMKLLK 384
           EA  +++
Sbjct: 480 EAYAMIR 486

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 44/222 (19%), Positives = 95/222 (42%), Gaps = 20/222 (9%)

Query: 171 GTEALYNT-IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTY 229
             + + NT ++  +++  ++  A  VF  M        R ++ S+N L   + + G+ T 
Sbjct: 357 PLDIVANTALVDLYSKWGRMEDARNVFDRMP-------RKNLISWNALIAGYGNHGRGT- 408

Query: 230 INHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN 289
                 + +  +F++M+ +G+ P+  +  +++     S        IF  M   +   P 
Sbjct: 409 ------KAVE-MFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR 461

Query: 290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLW 349
           +  Y  +I  L  +G    A  +   ++R  F P+   + +L++A  ++  + E  +   
Sbjct: 462 AMHYACMIELLGREGLLDEAYAM---IRRAPFKPTVNMWAALLTACRIHKNL-ELGRLAA 517

Query: 350 EMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL 391
           E +    P     Y  +L+     GR  EA K+++ L+ K L
Sbjct: 518 EKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559

Length = 697

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.1 bits (82), Expect = 0.002
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGF 321
            +Y+ LI G C  G+ + A EL  EMK KG 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 10/33 (30%), Positives = 15/33 (45%)

Query: 291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP 323
            +Y+ L+  L   G    A  + +EMK  G  P
Sbjct: 2   ETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	417
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.87
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.87
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.81
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.81
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.73
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.69
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.61
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.58
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.58
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.57
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.56
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.55
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.54
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.51
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.5
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.5
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.45
PRK14574	822	hmsH outer membrane protein; Provisional	99.45
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.45
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.45
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.45
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.44
PF13041	50	PPR_2: PPR repeat family	99.44
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.44
PF13041	50	PPR_2: PPR repeat family	99.44
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.43
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.43
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.4
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.39
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.38
PRK14574	822	hmsH outer membrane protein; Provisional	99.37
KOG1126	638	consensus DNA-binding cell division cycle control	99.35
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.33
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.33
PRK12370	553	invasion protein regulator; Provisional	99.33
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.32
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.25
PRK12370	553	invasion protein regulator; Provisional	99.22
KOG1126	638	consensus DNA-binding cell division cycle control	99.22
KOG2076	895	consensus RNA polymerase III transcription factor	99.2
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.18
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.15
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.13
KOG2003	840	consensus TPR repeat-containing protein [General f	99.12
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.07
KOG2076	895	consensus RNA polymerase III transcription factor	99.07
KOG1129	478	consensus TPR repeat-containing protein [General f	99.06
PRK11189	296	lipoprotein NlpI; Provisional	99.03
PRK11189	296	lipoprotein NlpI; Provisional	99.03
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.97
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.93
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.91
KOG1129	478	consensus TPR repeat-containing protein [General f	98.9
PF12854	34	PPR_1: PPR repeat	98.88
PF12854	34	PPR_1: PPR repeat	98.87
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.86
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.85
KOG2003	840	consensus TPR repeat-containing protein [General f	98.82
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.82
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.81
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.77
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.77
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.75
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.74
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.72
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.71
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.7
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.69
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.66
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.65
KOG0547	606	consensus Translocase of outer mitochondrial membr	98.63
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.62
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.58
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.54
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.53
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.48
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.44
KOG1125	579	consensus TPR repeat-containing protein [General f	98.43
PLN02789	320	farnesyltranstransferase	98.42
PLN02789	320	farnesyltranstransferase	98.42
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.41
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.38
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.37
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.34
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.33
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.32
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.31
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.3
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.27
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.26
PRK04841	903	transcriptional regulator MalT; Provisional	98.25
PRK15359	144	type III secretion system chaperone protein SscB;	98.25
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.24
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.23
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.23
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.23
KOG1915	677	consensus Cell cycle control protein (crooked neck	98.22
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.21
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.2
KOG1125	579	consensus TPR repeat-containing protein [General f	98.19
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.18
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.18
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.17
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.16
PRK15359	144	type III secretion system chaperone protein SscB;	98.14
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.13
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.12
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.12
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.11
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.1
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.09
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.08
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.08
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.08
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.08
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.07
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.05
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.04
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.04
PRK04841	903	transcriptional regulator MalT; Provisional	98.03
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.03
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.02
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.01
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.99
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	97.98
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	97.98
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.97
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.97
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.95
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.95
KOG3616	1636	consensus Selective LIM binding factor [Transcript	97.94
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.86
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.83
TIGR02552	135	LcrH_SycD type III secretion low calcium response	97.82
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.81
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.79
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.75
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.74
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.71
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	97.7
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	97.69
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.67
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.6
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.6
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.59
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.58
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.58
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.52
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.49
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	97.46
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.42
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.37
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.35
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.32
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.31
PF12688	120	TPR_5: Tetratrico peptide repeat	97.29
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.21
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.18
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.18
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.16
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.12
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.1
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.1
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.09
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.09
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.07
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.06
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.04
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.04
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	97.04
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.03
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.03
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.88
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	96.88
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	96.87
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	96.85
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.85
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.84
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	96.76
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	96.75
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	96.72
PF12688	120	TPR_5: Tetratrico peptide repeat	96.72
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.64
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.6
PRK10803	263	tol-pal system protein YbgF; Provisional	96.59
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.55
KOG0553	304	consensus TPR repeat-containing protein [General f	96.42
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.41
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.37
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.33
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.33
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.32
KOG3941	406	consensus Intermediate in Toll signal transduction	96.32
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	96.3
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.29
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.25
PRK10803	263	tol-pal system protein YbgF; Provisional	96.18
KOG3941	406	consensus Intermediate in Toll signal transduction	96.18
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.15
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.13
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.03
PF13371	73	TPR_9: Tetratricopeptide repeat	95.99
KOG0553	304	consensus TPR repeat-containing protein [General f	95.96
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.92
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.9
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.88
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.88
KOG2796	366	consensus Uncharacterized conserved protein [Funct	95.86
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.85
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	95.84
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	95.81
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	95.75
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.7
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.69
PF13371	73	TPR_9: Tetratricopeptide repeat	95.69
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.66
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	95.55
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	95.5
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	95.21
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.14
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.92
KOG2041	1189	consensus WD40 repeat protein [General function pr	94.9
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.7
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	94.58
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.33
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	94.24
PRK15331	165	chaperone protein SicA; Provisional	94.21
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.01
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.92
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	93.8
KOG1585	308	consensus Protein required for fusion of vesicles	93.79
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	93.71
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	93.66
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.63
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.63
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.57
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	93.57
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	93.56
COG3898	531	Uncharacterized membrane-bound protein [Function u	93.51
PF13929	292	mRNA_stabil: mRNA stabilisation	93.41
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.33
PRK15331	165	chaperone protein SicA; Provisional	93.15
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	93.08
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.97
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	92.95
PF13512	142	TPR_18: Tetratricopeptide repeat	92.72
PF13929	292	mRNA_stabil: mRNA stabilisation	92.65
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	92.58
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.54
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.39
KOG4555	175	consensus TPR repeat-containing protein [Function	92.35
PRK11906	458	transcriptional regulator; Provisional	92.14
KOG4555	175	consensus TPR repeat-containing protein [Function	92.13
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	92.09
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	92.01
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	91.98
PF13428	44	TPR_14: Tetratricopeptide repeat	91.66
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.51
PF13512	142	TPR_18: Tetratricopeptide repeat	91.47
PRK09687	280	putative lyase; Provisional	91.4
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.19
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.18
KOG4570	418	consensus Uncharacterized conserved protein [Funct	91.08
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	90.99
PF13428	44	TPR_14: Tetratricopeptide repeat	90.87
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	90.78
KOG1585	308	consensus Protein required for fusion of vesicles	90.77
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	90.59
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.54
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	90.45
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.31
KOG1550	552	consensus Extracellular protein SEL-1 and related	90.25
COG3118	304	Thioredoxin domain-containing protein [Posttransla	90.23
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	90.1
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	90.05
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	89.49
COG1747	711	Uncharacterized N-terminal domain of the transcrip	89.28
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	89.28
KOG4570	418	consensus Uncharacterized conserved protein [Funct	89.02
PF13762	145	MNE1: Mitochondrial splicing apparatus component	88.66
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	88.61
KOG1550	552	consensus Extracellular protein SEL-1 and related	88.46
PRK11906	458	transcriptional regulator; Provisional	88.38
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	87.71
COG1747	711	Uncharacterized N-terminal domain of the transcrip	87.56
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	87.28
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	87.09
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	86.93
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.58
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	86.02
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.85
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	85.27
PF13934	226	ELYS: Nuclear pore complex assembly	84.63
COG0457	291	NrfG FOG: TPR repeat [General function prediction	84.6
COG3898	531	Uncharacterized membrane-bound protein [Function u	84.55
COG0457	291	NrfG FOG: TPR repeat [General function prediction	84.21
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.13
KOG1941	518	consensus Acetylcholine receptor-associated protei	84.11
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	83.82
COG5187	412	RPN7 26S proteasome regulatory complex component,	83.66
PF13431	34	TPR_17: Tetratricopeptide repeat	83.12
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	82.64
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	82.52
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	82.19
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	81.89
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	81.14
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	81.09
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.84
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	80.66
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.61
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	80.58

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.5e-49  Score=405.00  Aligned_cols=297  Identities=15%  Similarity=0.172  Sum_probs=177.1

Q ss_pred             CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH
Q 014860           99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT  178 (417)
Q Consensus        99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~  178 (417)
                      |+..+|+.++.+|++.|+.+.|.++|+.|. ..|+.||..+|+.+|.+|++.|++++|.++|+.|.+.+.. ||..+|+.
T Consensus       470 pD~~tynsLI~~y~k~G~vd~A~~vf~eM~-~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~-PD~vTYns  547 (1060)
T PLN03218        470 ADCKLYTTLISTCAKSGKVDAMFEVFHEMV-NAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK-PDRVVFNA  547 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-CCHHHHHH
Confidence            344455555555555555555555555552 3444555555555555555555555555555555554444 55555555


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN  258 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  258 (417)
                      ||.+|++.|++++|.++|++|...+ .|+.||..+|+++|.+|++.|+        +++|.++|++|.+.|+.|+..+|+
T Consensus       548 LI~a~~k~G~~deA~~lf~eM~~~~-~gi~PD~vTynaLI~ay~k~G~--------ldeA~elf~~M~e~gi~p~~~tyn  618 (1060)
T PLN03218        548 LISACGQSGAVDRAFDVLAEMKAET-HPIDPDHITVGALMKACANAGQ--------VDRAKEVYQMIHEYNIKGTPEVYT  618 (1060)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhc-CCCCCcHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHcCCCCChHHHH
Confidence            5555555555555555555554310 1455555555555555555555        566666666666666666666666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860          259 SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN  338 (417)
Q Consensus       259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~  338 (417)
                      ++|.+|++.|++++|.++|++|.+ .|+.||..+|+.+|.+|++.|++++|.+++++|.+.|+.||..+|++||.+|++.
T Consensus       619 sLI~ay~k~G~~deAl~lf~eM~~-~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~  697 (1060)
T PLN03218        619 IAVNSCSQKGDWDFALSIYDDMKK-KGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNA  697 (1060)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence            666666666666666666666665 5666666666666666666666666666666666666666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860          339 GEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD  407 (417)
Q Consensus       339 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~  407 (417)
                      |++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|...|+ ||..||+.+|.+|++.
T Consensus       698 G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~  767 (1060)
T PLN03218        698 KNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERK  767 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC
Confidence            66666666666666666666666666666666666666666666666666666 6666666666666655

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=3.1e-49  Score=402.78  Aligned_cols=296  Identities=17%  Similarity=0.267  Sum_probs=288.0

Q ss_pred             CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH
Q 014860           99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT  178 (417)
Q Consensus        99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~  178 (417)
                      |+..+|+.++.+|++.|+++.|.++|+.|. +.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|.. ||..+|++
T Consensus       435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~-PdvvTyna  512 (1060)
T PLN03218        435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVE-ANVHTFGA  512 (1060)
T ss_pred             CCHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCC-CCHHHHHH
Confidence            777899999999999999999999999994 7889999999999999999999999999999999999887 99999999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH--CCCCCCHHH
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN--DGIEPDIFS  256 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~--~g~~p~~~~  256 (417)
                      ||.+|++.|++++|.++|++|.+.   |+.||..+|+.||.+|++.|+        +++|.++|++|.+  .|+.||..+
T Consensus       513 LI~gy~k~G~~eeAl~lf~~M~~~---Gv~PD~vTYnsLI~a~~k~G~--------~deA~~lf~eM~~~~~gi~PD~vT  581 (1060)
T PLN03218        513 LIDGCARAGQVAKAFGAYGIMRSK---NVKPDRVVFNALISACGQSGA--------VDRAFDVLAEMKAETHPIDPDHIT  581 (1060)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhcCCCCCcHHH
Confidence            999999999999999999999998   899999999999999999999        9999999999986  688999999


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014860          257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALA  336 (417)
Q Consensus       257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~  336 (417)
                      |+++|.+|++.|++++|.++|+.|.+ .|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|+
T Consensus       582 ynaLI~ay~k~G~ldeA~elf~~M~e-~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~  660 (1060)
T PLN03218        582 VGALMKACANAGQVDRAKEVYQMIHE-YNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAG  660 (1060)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH-cCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999 89999999999999999999999999999999999999999999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhhc
Q 014860          337 LNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDDF  408 (417)
Q Consensus       337 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~~  408 (417)
                      +.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+ ||..+|+.||.+|++.+
T Consensus       661 k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G  733 (1060)
T PLN03218        661 HAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGN  733 (1060)
T ss_pred             hCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC
Confidence            9999999999999999999999999999999999999999999999999999999 89999999999999873

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=7.3e-45  Score=367.07  Aligned_cols=284  Identities=17%  Similarity=0.206  Sum_probs=205.0

Q ss_pred             CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHH-----------------------------------HHHH
Q 014860           99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDAST-----------------------------------YHIM  143 (417)
Q Consensus        99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----------------------------------~~~l  143 (417)
                      |+..+|+.++.+|++.|++++|+++|+.|. +.|+.||..+                                   |+.+
T Consensus       187 ~~~~t~n~li~~~~~~g~~~~A~~lf~~M~-~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~L  265 (697)
T PLN03081        187 RNLASWGTIIGGLVDAGNYREAFALFREMW-EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCAL  265 (697)
T ss_pred             CCeeeHHHHHHHHHHCcCHHHHHHHHHHHH-HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHH
Confidence            455778888888888888888888888884 3444444444                                   4555


Q ss_pred             HHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHh
Q 014860          144 TRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS  223 (417)
Q Consensus       144 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~  223 (417)
                      |.+|++.|++++|.++|+.|.+     +|..+||++|.+|++.|++++|.++|++|.+.   |+.||..||++++.+|++
T Consensus       266 i~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~---g~~pd~~t~~~ll~a~~~  337 (697)
T PLN03081        266 IDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDS---GVSIDQFTFSIMIRIFSR  337 (697)
T ss_pred             HHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHh
Confidence            5556666666666666666543     56667777777777777777777777777665   677777777777777777


Q ss_pred             cCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhc
Q 014860          224 RGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQ  303 (417)
Q Consensus       224 ~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  303 (417)
                      .|+        +++|.+++.+|.+.|+.||..+|++||++|+++|++++|.++|++|.+     ||..+||+||.+|++.
T Consensus       338 ~g~--------~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d~~t~n~lI~~y~~~  404 (697)
T PLN03081        338 LAL--------LEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-----KNLISWNALIAGYGNH  404 (697)
T ss_pred             ccc--------hHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-----CCeeeHHHHHHHHHHc
Confidence            777        777777777777777777777777777777777777777777777754     6777777777777777


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 014860          304 GRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-QRPVDFITYRTVLDEICRRGRAGEAMKL  382 (417)
Q Consensus       304 g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~  382 (417)
                      |+.++|.++|++|.+.|+.||..||+++|.+|++.|.+++|.++|++|.+. |+.|+..+|+++|++|++.|++++|.++
T Consensus       405 G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~  484 (697)
T PLN03081        405 GRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAM  484 (697)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHH
Confidence            777777777777777777777777777777777777777777777777653 7777777777777777777777777777


Q ss_pred             HHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860          383 LKELQNKNL-IDGYTYTKLLDVLEDD  407 (417)
Q Consensus       383 ~~~m~~~~~-p~~~t~~~ll~~~~~~  407 (417)
                      +++|   ++ |+..+|++|+.+|...
T Consensus       485 ~~~~---~~~p~~~~~~~Ll~a~~~~  507 (697)
T PLN03081        485 IRRA---PFKPTVNMWAALLTACRIH  507 (697)
T ss_pred             HHHC---CCCCCHHHHHHHHHHHHHc
Confidence            7665   34 6777777777777665

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=6e-44  Score=360.42  Aligned_cols=287  Identities=16%  Similarity=0.247  Sum_probs=194.1

Q ss_pred             CCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHH
Q 014860          100 PRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTI  179 (417)
Q Consensus       100 ~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l  179 (417)
                      +..+|+.++..+.+.|++++|+++|++|....++.||..+|+.++.+|++.++++.+.+++..|.+.|.. ||..+|+.+
T Consensus        86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~-~~~~~~n~L  164 (697)
T PLN03081         86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE-PDQYMMNRV  164 (697)
T ss_pred             CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCC-cchHHHHHH
Confidence            3346777777777777777777777777555556677777777777777777777777777777777666 677777777


Q ss_pred             HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC------
Q 014860          180 IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD------  253 (417)
Q Consensus       180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~------  253 (417)
                      +.+|+++|++++|.++|++|.+       ||..+||++|.+|++.|+        +++|+++|++|.+.|+.||      
T Consensus       165 i~~y~k~g~~~~A~~lf~~m~~-------~~~~t~n~li~~~~~~g~--------~~~A~~lf~~M~~~g~~p~~~t~~~  229 (697)
T PLN03081        165 LLMHVKCGMLIDARRLFDEMPE-------RNLASWGTIIGGLVDAGN--------YREAFALFREMWEDGSDAEPRTFVV  229 (697)
T ss_pred             HHHHhcCCCHHHHHHHHhcCCC-------CCeeeHHHHHHHHHHCcC--------HHHHHHHHHHHHHhCCCCChhhHHH
Confidence            7777777777777777777753       466777777777777777        7777777777765554443      


Q ss_pred             -----------------------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC
Q 014860          254 -----------------------------IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG  304 (417)
Q Consensus       254 -----------------------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g  304 (417)
                                                   ..+||+||++|+++|++++|.++|+.|.+     +|..+||+||.+|++.|
T Consensus       230 ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-----~~~vt~n~li~~y~~~g  304 (697)
T PLN03081        230 MLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE-----KTTVAWNSMLAGYALHG  304 (697)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC-----CChhHHHHHHHHHHhCC
Confidence                                         44446666667777777766666666654     56666666666666666


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC---------------------------
Q 014860          305 RTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRP---------------------------  357 (417)
Q Consensus       305 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~---------------------------  357 (417)
                      +.++|.++|++|.+.|+.||..||++++.+|++.|++++|.+++.+|.+.|+.                           
T Consensus       305 ~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~  384 (697)
T PLN03081        305 YSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFD  384 (697)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHH
Confidence            66666666666666666666666655555555555555555555555444432                           


Q ss_pred             ----CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860          358 ----VDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD  407 (417)
Q Consensus       358 ----p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~  407 (417)
                          ||..+|++||.+|++.|+.++|.++|++|.+.|+ ||..||+.+|.+|++.
T Consensus       385 ~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~  439 (697)
T PLN03081        385 RMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYS  439 (697)
T ss_pred             hCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcC
Confidence                4666777777777777777777777777777777 7888888888777765

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.7e-43  Score=365.25  Aligned_cols=301  Identities=14%  Similarity=0.151  Sum_probs=196.0

Q ss_pred             hHHHHHHhcC--CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcC
Q 014860           89 TQFRCAVSEL--PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT  166 (417)
Q Consensus        89 ~~~~~~l~~~--p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  166 (417)
                      ......+...  |+..+||.++.+|++.|++++|+++|+.|. ..|+.||..||+.+|.+|++.|+++.+.+++..|.+.
T Consensus       239 ~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~-~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~  317 (857)
T PLN03077        239 VSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMR-ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKT  317 (857)
T ss_pred             HHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHh
Confidence            3344555555  466899999999999999999999999995 6778999999999999888888888888888888888


Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860          167 PSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV  246 (417)
Q Consensus       167 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~  246 (417)
                      |.. ||..+||+||.+|+++|++++|.++|++|..       ||..+||++|.+|++.|+        .++|+++|++|.
T Consensus       318 g~~-~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~d~~s~n~li~~~~~~g~--------~~~A~~lf~~M~  381 (857)
T PLN03077        318 GFA-VDVSVCNSLIQMYLSLGSWGEAEKVFSRMET-------KDAVSWTAMISGYEKNGL--------PDKALETYALME  381 (857)
T ss_pred             CCc-cchHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------CCeeeHHHHHHHHHhCCC--------HHHHHHHHHHHH
Confidence            876 8888888888888888888888888877753       366667777777777776        666666666666


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------
Q 014860          247 NDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK-------  319 (417)
Q Consensus       247 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------  319 (417)
                      +.|+.||..||+.+|.+|++.|+++.|.++++.|.+ .|+.|+..+|++||.+|++.|++++|.++|++|.+.       
T Consensus       382 ~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~  460 (857)
T PLN03077        382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAER-KGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTS  460 (857)
T ss_pred             HhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHH-hCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHH
Confidence            666666655555555554444444444444444444 344444444444444443333333333333333211       


Q ss_pred             -----------------------CC-------------------------------------------------------
Q 014860          320 -----------------------GF-------------------------------------------------------  321 (417)
Q Consensus       320 -----------------------g~-------------------------------------------------------  321 (417)
                                             ++                                                       
T Consensus       461 mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~  540 (857)
T PLN03077        461 IIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRM  540 (857)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCH
Confidence                                   12                                                       


Q ss_pred             ----------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH-HCC
Q 014860          322 ----------VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQ-NKN  390 (417)
Q Consensus       322 ----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-~~~  390 (417)
                                .||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|. +.|
T Consensus       541 ~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~g  620 (857)
T PLN03077        541 NYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYS  620 (857)
T ss_pred             HHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhC
Confidence                      233444555555566666666666666666666666666666666666666666666666666665 445


Q ss_pred             C-CChhhHHHHHHHHHhh
Q 014860          391 L-IDGYTYTKLLDVLEDD  407 (417)
Q Consensus       391 ~-p~~~t~~~ll~~~~~~  407 (417)
                      + |+..+|+.++++|++.
T Consensus       621 i~P~~~~y~~lv~~l~r~  638 (857)
T PLN03077        621 ITPNLKHYACVVDLLGRA  638 (857)
T ss_pred             CCCchHHHHHHHHHHHhC
Confidence            5 5666666666666655

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.1e-42  Score=359.08  Aligned_cols=294  Identities=16%  Similarity=0.158  Sum_probs=180.6

Q ss_pred             HHHHhcC--CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860           92 RCAVSEL--PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF  169 (417)
Q Consensus        92 ~~~l~~~--p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  169 (417)
                      .+.+...  |+..+|+.++.+|++.|++++|+++|+.|. ..|+.||..||+.++++|+..++++.+.+++..|.+.|..
T Consensus       141 ~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~-~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~  219 (857)
T PLN03077        141 WYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRML-WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFE  219 (857)
T ss_pred             HHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH-HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCC
Confidence            3444444  566899999999999999999999999995 5688899888887777777666666666666666666655


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860          170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG  249 (417)
Q Consensus       170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g  249 (417)
                       +|..+||+||.+|+++|++++|.++|++|.+       ||..+||+||.+|++.|+        .++|+++|++|.+.|
T Consensus       220 -~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~-------~d~~s~n~li~~~~~~g~--------~~eAl~lf~~M~~~g  283 (857)
T PLN03077        220 -LDVDVVNALITMYVKCGDVVSARLVFDRMPR-------RDCISWNAMISGYFENGE--------CLEGLELFFTMRELS  283 (857)
T ss_pred             -cccchHhHHHHHHhcCCCHHHHHHHHhcCCC-------CCcchhHHHHHHHHhCCC--------HHHHHHHHHHHHHcC
Confidence             6666666666666666666666666666643       355555555555555555        555555555555555


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          250 IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYN  329 (417)
Q Consensus       250 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~  329 (417)
                      +.||..||+.+|.+|++.|+++.|.+++..|.+ .|+.||..+||+||.+|++.|++++|.++|++|.    .||..+||
T Consensus       284 ~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~-~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n  358 (857)
T PLN03077        284 VDPDLMTITSVISACELLGDERLGREMHGYVVK-TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWT  358 (857)
T ss_pred             CCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH-hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHH
Confidence            555555555555555555555555555555555 4555555555555555555555555555555553    23445555


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860          330 SLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD  407 (417)
Q Consensus       330 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~  407 (417)
                      ++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+.|+ |+..+|+.||++|++.
T Consensus       359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~  437 (857)
T PLN03077        359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC  437 (857)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence            55555555555555555555555555555555555555555555555555555555555555 4555555555555544

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.87  E-value=7.2e-19  Score=166.68  Aligned_cols=286  Identities=14%  Similarity=0.140  Sum_probs=183.1

Q ss_pred             ChhHHHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHH
Q 014860           87 DDTQFRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRH--DASTYHIMTRKLGAAKMYQEMDDVVNQM  163 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m  163 (417)
                      ....+.+.+...|+.. .+..+...+...|+++.|+.+++.+.......+  ....+..+...+...|++++|..+++.+
T Consensus        54 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~  133 (389)
T PRK11788         54 AIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQL  133 (389)
T ss_pred             HHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3444556665555443 455566666777777777777777654332111  1245666677777777777777777777


Q ss_pred             HcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HHHHHHHHHHHHhcCCccchhhhhHHHHH
Q 014860          164 LATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IRSYNILFTAFLSRGKNTYINHVYMETIR  239 (417)
Q Consensus       164 ~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~~~~~~~~~a~  239 (417)
                      .+...  .+..+++.++..|.+.|++++|.+.|+.+.+..   ..+.    ...|..+...+...|+        .++|.
T Consensus       134 l~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~--------~~~A~  200 (389)
T PRK11788        134 VDEGD--FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLG---GDSLRVEIAHFYCELAQQALARGD--------LDAAR  200 (389)
T ss_pred             HcCCc--chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHhCCC--------HHHHH
Confidence            66532  456677777777777777777777777776641   1111    1234456666667777        77777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860          240 CLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK  319 (417)
Q Consensus       240 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  319 (417)
                      +.|+++.+.. +.+...+..+...+.+.|++++|.++++++.+. +-.....+++.++.+|...|++++|...++++.+.
T Consensus       201 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~  278 (389)
T PRK11788        201 ALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE  278 (389)
T ss_pred             HHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            7777776643 233456666667777777777777777777652 11112345667777777777777777777777664


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHhHHHHHHHHHHHCCC
Q 014860          320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR---RGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       320 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~  391 (417)
                        .|+...+..+...+.+.|++++|..+++++.+.  .|+..++..++..+..   .|+.+++..++++|.++++
T Consensus       279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~  349 (389)
T PRK11788        279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQL  349 (389)
T ss_pred             --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHH
Confidence              355555667777777777777777777776664  4677777766666554   4467777777777777665

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.87  E-value=1.7e-18  Score=164.11  Aligned_cols=278  Identities=13%  Similarity=0.049  Sum_probs=232.4

Q ss_pred             HHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHhC
Q 014860          110 VMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG--TEALYNTIIYFFAEAR  187 (417)
Q Consensus       110 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g  187 (417)
                      .+...|+++.|+..|..+.+..  +.+..++..+...+...|++++|..+++.+.+.+...+  ....+..+...|.+.|
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g  121 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG  121 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC
Confidence            3457789999999999997654  45677899999999999999999999999988654311  1356888999999999


Q ss_pred             CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH----HHHHHHHHH
Q 014860          188 KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI----FSLNSMIKG  263 (417)
Q Consensus       188 ~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~  263 (417)
                      ++++|..+|+++.+.    .+.+..+++.++..+...|+        +++|.+.++.+.+.+..++.    ..+..+...
T Consensus       122 ~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~  189 (389)
T PRK11788        122 LLDRAEELFLQLVDE----GDFAEGALQQLLEIYQQEKD--------WQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ  189 (389)
T ss_pred             CHHHHHHHHHHHHcC----CcchHHHHHHHHHHHHHhch--------HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            999999999999874    24567889999999999999        99999999999986533322    245567778


Q ss_pred             HHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860          264 YILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEE  343 (417)
Q Consensus       264 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  343 (417)
                      +.+.|++++|.+.|+++.+. . +.+...+..+...+.+.|++++|.++++++.+.+......+++.+..+|.+.|++++
T Consensus       190 ~~~~~~~~~A~~~~~~al~~-~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~  267 (389)
T PRK11788        190 ALARGDLDAARALLKKALAA-D-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE  267 (389)
T ss_pred             HHhCCCHHHHHHHHHHHHhH-C-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence            88999999999999999762 2 345668888899999999999999999999976433335678999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHh
Q 014860          344 TVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED  406 (417)
Q Consensus       344 A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~  406 (417)
                      |...++++.+.  .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+..
T Consensus       268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~-~P~~~~~~~l~~~~~~  327 (389)
T PRK11788        268 GLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR-HPSLRGFHRLLDYHLA  327 (389)
T ss_pred             HHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh-CcCHHHHHHHHHHhhh
Confidence            99999999886  467777788999999999999999999999876 4888889888877664

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.81  E-value=1.9e-16  Score=165.89  Aligned_cols=287  Identities=11%  Similarity=0.050  Sum_probs=164.0

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF  183 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~  183 (417)
                      +..+...+...|++++|+.+++.+.+..  +.+...|..+...+...|++++|.+.++.+.+...  .+...+..+..+|
T Consensus       570 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~  645 (899)
T TIGR02917       570 ALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQP--DSALALLLLADAY  645 (899)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CChHHHHHHHHHH
Confidence            3444555555566666666665554322  34555555555555555566666555555554432  3344455555555


Q ss_pred             HHhCCHHHHHHHHHHhHhCCCC------------------------------CCCCCHHHHHHHHHHHHhcCCccchhhh
Q 014860          184 AEARKLSRAVYVFKYMKNSRNL------------------------------ECRPSIRSYNILFTAFLSRGKNTYINHV  233 (417)
Q Consensus       184 ~~~g~~~~a~~~~~~m~~~~~~------------------------------g~~p~~~~~~~li~~~~~~g~~~~~~~~  233 (417)
                      .+.|++++|..+|+.+.+....                              ..+.+...+..+...+...|+       
T Consensus       646 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-------  718 (899)
T TIGR02917       646 AVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD-------  718 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC-------
Confidence            5555555555555555543100                              012233444444444444554       


Q ss_pred             hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860          234 YMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELC  313 (417)
Q Consensus       234 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~  313 (417)
                       +++|.+.|+++.+.+  |+..++..+..++.+.|++++|.+.++.+.+  ..+.+...+..+...|...|++++|...|
T Consensus       719 -~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~  793 (899)
T TIGR02917       719 -YPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPNDAVLRTALAELYLAQKDYDKAIKHY  793 (899)
T ss_pred             -HHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCcCHHHHHHHH
Confidence             555555555554432  3334444455555555555555555555544  12344555666666666666666666666


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 014860          314 DEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLID  393 (417)
Q Consensus       314 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~  393 (417)
                      +++.+.. +.+...++.+...+...|+ .+|+.+++++.+. .+-+..++..+...+...|++++|.++++++.+.+..+
T Consensus       794 ~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~  870 (899)
T TIGR02917       794 RTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL-APNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEA  870 (899)
T ss_pred             HHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh-CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            6666543 2355566666666666666 5566666666654 12244456667777888899999999999998877668


Q ss_pred             hhhHHHHHHHHHhhcC
Q 014860          394 GYTYTKLLDVLEDDFG  409 (417)
Q Consensus       394 ~~t~~~ll~~~~~~~~  409 (417)
                      ..++..+..++.+.+.
T Consensus       871 ~~~~~~l~~~~~~~g~  886 (899)
T TIGR02917       871 AAIRYHLALALLATGR  886 (899)
T ss_pred             hHHHHHHHHHHHHcCC
Confidence            8888888888887633

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.81  E-value=2.9e-16  Score=164.49  Aligned_cols=283  Identities=12%  Similarity=0.063  Sum_probs=191.8

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 014860          103 NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF  182 (417)
Q Consensus       103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~  182 (417)
                      .+..+...+.+.|+.++|+..|+.+.+..  +.+...+..+...+...|++++|.++++.+.+...  .+...|..+..+
T Consensus       535 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~  610 (899)
T TIGR02917       535 AILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQLKKALAILNEAADAAP--DSPEAWLMLGRA  610 (899)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHH
Confidence            34445555555666666666666654332  34455556666666666666666666666655433  455666777777


Q ss_pred             HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK  262 (417)
Q Consensus       183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  262 (417)
                      |.+.|++++|...|+.+.+.    .+.+...+..+...+...|+        +++|..+|+++.+.. +.+..++..+..
T Consensus       611 ~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~l~~  677 (899)
T TIGR02917       611 QLAAGDLNKAVSSFKKLLAL----QPDSALALLLLADAYAVMKN--------YAKAITSLKRALELK-PDNTEAQIGLAQ  677 (899)
T ss_pred             HHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence            77777777777777776654    13345566667777777777        777777777766543 334666777777


Q ss_pred             HHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          263 GYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE  342 (417)
Q Consensus       263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  342 (417)
                      .+...|++++|.++++.+.+.  .+.+...+..+...+...|++++|.+.|+.+...+  |+..++..+..++.+.|+.+
T Consensus       678 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~  753 (899)
T TIGR02917       678 LLLAAKRTESAKKIAKSLQKQ--HPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA  753 (899)
T ss_pred             HHHHcCCHHHHHHHHHHHHhh--CcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence            777777777777777777652  23456667777777778888888888888777653  44466777778888888888


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                      +|.+.++++.+. .+.+...+..+...|...|+.++|.++|+++.+....+...+..+...+.+.
T Consensus       754 ~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  817 (899)
T TIGR02917       754 EAVKTLEAWLKT-HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLEL  817 (899)
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence            888888887765 3456677788888888888888888888888887655777777777666554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.73  E-value=8e-14  Score=139.50  Aligned_cols=283  Identities=12%  Similarity=0.039  Sum_probs=191.6

Q ss_pred             ChhHHHHHHhcCCCCCC-HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860           87 DDTQFRCAVSELPPRFN-NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA  165 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~~~-~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  165 (417)
                      +...+...+...|+... +..+..+....|+++.|++.|+.+.+..  +.+...+..+...+...|++++|.+.++.+.+
T Consensus        61 A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~  138 (656)
T PRK15174         61 GLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVLLKSKQYATVADLAEQAWL  138 (656)
T ss_pred             hHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            44556677777776653 3344444567888888888888886544  45667777777888888888888888888877


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHH
Q 014860          166 TPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQM  245 (417)
Q Consensus       166 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m  245 (417)
                      ..+  .+...+..+...+...|++++|...++.+....    +.+...+..+ ..+...|+        +++|...++.+
T Consensus       139 l~P--~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~----P~~~~a~~~~-~~l~~~g~--------~~eA~~~~~~~  203 (656)
T PRK15174        139 AFS--GNSQIFALHLRTLVLMDKELQAISLARTQAQEV----PPRGDMIATC-LSFLNKSR--------LPEDHDLARAL  203 (656)
T ss_pred             hCC--CcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC----CCCHHHHHHH-HHHHHcCC--------HHHHHHHHHHH
Confidence            643  566777788888888888888888888776541    2233333333 34677777        88888888877


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCC
Q 014860          246 VNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKN----ARELCDEMKRKGF  321 (417)
Q Consensus       246 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~  321 (417)
                      .+....++...+..+..++.+.|++++|.+.++.....  -+.+...+..+...+...|++++    |...|++..+.. 
T Consensus       204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-  280 (656)
T PRK15174        204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-  280 (656)
T ss_pred             HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-
Confidence            66543334444455566777778888888877777652  23356666677777777777764    677777776643 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          322 VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       322 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      +.+...+..+...+...|++++|...+++..+.. +-+...+..+..+|.+.|++++|...|+++...+
T Consensus       281 P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~  348 (656)
T PRK15174        281 SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK  348 (656)
T ss_pred             CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            2245667777777777777777777777777642 2234455666677777777777777777777654

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.69  E-value=5.3e-13  Score=133.62  Aligned_cols=296  Identities=10%  Similarity=-0.011  Sum_probs=231.2

Q ss_pred             ChhHHHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860           87 DDTQFRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA  165 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  165 (417)
                      ....+.+.+...|+.. .+..+...+...|+++.|++.|+.+.+..  +.+...+..+...+...|++++|...++.+..
T Consensus        95 A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~--P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~  172 (656)
T PRK15174         95 VLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF--SGNSQIFALHLRTLVLMDKELQAISLARTQAQ  172 (656)
T ss_pred             HHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence            4556777777777664 56667777899999999999999997643  45788889999999999999999999998877


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHH
Q 014860          166 TPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQM  245 (417)
Q Consensus       166 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m  245 (417)
                      ...  .+...+..+ ..+.+.|++++|...++.+.+.   .-.++...+..+...+...|+        .++|+..+++.
T Consensus       173 ~~P--~~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~---~~~~~~~~~~~l~~~l~~~g~--------~~eA~~~~~~a  238 (656)
T PRK15174        173 EVP--PRGDMIATC-LSFLNKSRLPEDHDLARALLPF---FALERQESAGLAVDTLCAVGK--------YQEAIQTGESA  238 (656)
T ss_pred             hCC--CCHHHHHHH-HHHHHcCCHHHHHHHHHHHHhc---CCCcchhHHHHHHHHHHHCCC--------HHHHHHHHHHH
Confidence            654  233344333 3478899999999999998775   112334455666788899999        99999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 014860          246 VNDGIEPDIFSLNSMIKGYILSNHVND----ALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGF  321 (417)
Q Consensus       246 ~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  321 (417)
                      .+.. +.+...+..+-..+...|++++    |...|+...+.  -+.+...+..+...+...|++++|...+++..+...
T Consensus       239 l~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P  315 (656)
T PRK15174        239 LARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP  315 (656)
T ss_pred             HhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            9875 4467788889999999999986    78999988762  234677899999999999999999999999988642


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-ChhhHHH
Q 014860          322 VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFIT-YRTVLDEICRRGRAGEAMKLLKELQNKNLI-DGYTYTK  399 (417)
Q Consensus       322 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~~~p-~~~t~~~  399 (417)
                       -+...+..+..+|.+.|++++|...|+.+.+.  .|+... +..+..++...|+.++|...|++..+.... ....|.-
T Consensus       316 -~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~~~~~e  392 (656)
T PRK15174        316 -DLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLPQSFEE  392 (656)
T ss_pred             -CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhchhhHHH
Confidence             24667888899999999999999999999876  355433 344567889999999999999999887541 2333443


Q ss_pred             HHHHH
Q 014860          400 LLDVL  404 (417)
Q Consensus       400 ll~~~  404 (417)
                      .+..+
T Consensus       393 a~~~~  397 (656)
T PRK15174        393 GLLAL  397 (656)
T ss_pred             HHHHH
Confidence            44443

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.61  E-value=1.7e-12  Score=115.56  Aligned_cols=292  Identities=13%  Similarity=0.144  Sum_probs=193.1

Q ss_pred             HHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC
Q 014860           94 AVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT  172 (417)
Q Consensus        94 ~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  172 (417)
                      .+...|.. .++..+|.++|+-...+.|.++++... ....+.+..+||.+|.+-.-..    ..+++.+|...... ||
T Consensus       199 ~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~-~~k~kv~~~aFN~lI~~~S~~~----~K~Lv~EMisqkm~-Pn  272 (625)
T KOG4422|consen  199 LFETLPKTDETVSIMIAGLCKFSSLERARELYKEHR-AAKGKVYREAFNGLIGASSYSV----GKKLVAEMISQKMT-PN  272 (625)
T ss_pred             HHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHH-HhhheeeHHhhhhhhhHHHhhc----cHHHHHHHHHhhcC-Cc
Confidence            33445544 589999999999999999999999985 4445899999999998755332    27899999998887 99


Q ss_pred             HHHHHHHHHHHHHhCCHHH----HHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH--
Q 014860          173 EALYNTIIYFFAEARKLSR----AVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV--  246 (417)
Q Consensus       173 ~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~--  246 (417)
                      ..|||+++.+.++.|+++.    |.+++.+|++.   |+.|...+|..+|..+++.++.       ...+..++.+..  
T Consensus       273 l~TfNalL~c~akfg~F~~ar~aalqil~EmKei---GVePsLsSyh~iik~f~re~dp-------~k~as~~i~dI~N~  342 (625)
T KOG4422|consen  273 LFTFNALLSCAAKFGKFEDARKAALQILGEMKEI---GVEPSLSSYHLIIKNFKRESDP-------QKVASSWINDIQNS  342 (625)
T ss_pred             hHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHh---CCCcchhhHHHHHHHhcccCCc-------hhhhHHHHHHHHHh
Confidence            9999999999999998776    56788899998   9999999999999999998882       122333333333  


Q ss_pred             --HCCCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---CCCC---HHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860          247 --NDGIEP----DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYN---YLPN---SFSYDYLIHGLCAQGRTKNARELCD  314 (417)
Q Consensus       247 --~~g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~---~~~~~~li~~~~~~g~~~~A~~l~~  314 (417)
                        -..++|    |..-|..-|+.|.+..+.+.|.++..-+....+   +.|+   ..-|..+....|.....+.-..+|+
T Consensus       343 ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~  422 (625)
T KOG4422|consen  343 LTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYE  422 (625)
T ss_pred             hccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence              222333    344556667777777777777777666543111   1122   1223444455555555555555555


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC---------------------------------------
Q 014860          315 EMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQ---------------------------------------  355 (417)
Q Consensus       315 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g---------------------------------------  355 (417)
                      .|.-.-.-|+..+...++++..-.|.++-.-+++..+++.|                                       
T Consensus       423 ~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aa  502 (625)
T KOG4422|consen  423 DLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAA  502 (625)
T ss_pred             HhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHH
Confidence            55544444555555555555554444444444443333322                                       


Q ss_pred             ---------------CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CChhhHHHHH
Q 014860          356 ---------------RPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL--IDGYTYTKLL  401 (417)
Q Consensus       356 ---------------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll  401 (417)
                                     ........+...-.+.+.|+.++|.++|.-+.+.+-  |-....+.++
T Consensus       503 d~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~  565 (625)
T KOG4422|consen  503 DIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA  565 (625)
T ss_pred             HHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence                           122333455556667899999999999999866543  4334444333

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.58  E-value=2.7e-11  Score=121.39  Aligned_cols=166  Identities=10%  Similarity=-0.064  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860          212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF  291 (417)
Q Consensus       212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  291 (417)
                      ..|+.+...+...|+        +++|+..|++..+.. +-+...|..+...+...|++++|...|+...+.  -+.+..
T Consensus       332 ~a~~~lg~~~~~~g~--------~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~--~p~~~~  400 (615)
T TIGR00990       332 IALNLRGTFKCLKGK--------HLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL--NSEDPD  400 (615)
T ss_pred             HHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH
Confidence            345555556666666        777777777766553 222446666666777777777777777776552  123456


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC  371 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  371 (417)
                      .|..+...+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|++..+. .+-+...|..+...+.
T Consensus       401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~  478 (615)
T TIGR00990       401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLL  478 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHH
Confidence            67777777777777777777777776653 224566666777777777788887777777654 2334566777777777


Q ss_pred             HcCCHhHHHHHHHHHHHCC
Q 014860          372 RRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       372 ~~g~~~~A~~~~~~m~~~~  390 (417)
                      ..|++++|.+.|++.....
T Consensus       479 ~~g~~~~A~~~~~~Al~l~  497 (615)
T TIGR00990       479 DQNKFDEAIEKFDTAIELE  497 (615)
T ss_pred             HccCHHHHHHHHHHHHhcC
Confidence            7888888888877766653

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.58  E-value=1.3e-11  Score=123.66  Aligned_cols=259  Identities=12%  Similarity=0.034  Sum_probs=208.4

Q ss_pred             cCChhHHHHHHHHhhcCCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860          114 QEDPLVCLELFNWASKQPRFRH-DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA  192 (417)
Q Consensus       114 ~~~~~~A~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a  192 (417)
                      .+++++|++.|+.+.......| ....|..+...+...|++++|...++...+...  .+...|..+...+...|++++|
T Consensus       307 ~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P--~~~~~~~~la~~~~~~g~~~eA  384 (615)
T TIGR00990       307 DESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--RVTQSYIKRASMNLELGDPDKA  384 (615)
T ss_pred             hhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHCCCHHHH
Confidence            4679999999999875443333 456788888888899999999999999988753  4567888999999999999999


Q ss_pred             HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860          193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVND  272 (417)
Q Consensus       193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  272 (417)
                      +..|++..+.    -+.+...|..+...+...|+        +++|...|++..+.. +.+...+..+...+.+.|++++
T Consensus       385 ~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~e  451 (615)
T TIGR00990       385 EEDFDKALKL----NSEDPDIYYHRAQLHFIKGE--------FAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIAS  451 (615)
T ss_pred             HHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHH
Confidence            9999999875    23457889999999999999        999999999998875 3456778888889999999999


Q ss_pred             HHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHHHhcCCHHHHHH
Q 014860          273 ALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP-----SS-KSYNSLVSALALNGEVEETVK  346 (417)
Q Consensus       273 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-----~~-~~~~~li~~~~~~g~~~~A~~  346 (417)
                      |...|+...+.  .+.+...|+.+...+...|++++|.+.|++..+.....     +. ..++..+..+...|++++|.+
T Consensus       452 A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~  529 (615)
T TIGR00990       452 SMATFRRCKKN--FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAEN  529 (615)
T ss_pred             HHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHH
Confidence            99999998762  34457889999999999999999999999987653221     11 122223334445799999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          347 NLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       347 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      ++++..+.. +-+...+..+...+.+.|++++|.+.|++..+..
T Consensus       530 ~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~  572 (615)
T TIGR00990       530 LCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELA  572 (615)
T ss_pred             HHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence            999988753 2344578889999999999999999999987654

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.57  E-value=6e-12  Score=112.14  Aligned_cols=290  Identities=16%  Similarity=0.164  Sum_probs=212.5

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH--ccCChhHH-HHHHHHHHcCCC-----------
Q 014860          103 NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLG--AAKMYQEM-DDVVNQMLATPS-----------  168 (417)
Q Consensus       103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a-~~~~~~m~~~~~-----------  168 (417)
                      +-|.|+... .++..+.+.-+|+.| +..|+..+...-..+++..+  ...++.-+ ++.|-.|.+.|.           
T Consensus       118 ~E~nL~kmI-S~~EvKDs~ilY~~m-~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v  195 (625)
T KOG4422|consen  118 TENNLLKMI-SSREVKDSCILYERM-RSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV  195 (625)
T ss_pred             chhHHHHHH-hhcccchhHHHHHHH-HhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence            444555543 467788899999999 46677777777666655422  22222111 122222222210           


Q ss_pred             -------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHH
Q 014860          169 -------FCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCL  241 (417)
Q Consensus       169 -------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~  241 (417)
                             .+.+..++..||.+.|+--..++|.++|++....   ..+.+..+||.+|.+-.-..            ..++
T Consensus       196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~---k~kv~~~aFN~lI~~~S~~~------------~K~L  260 (625)
T KOG4422|consen  196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAA---KGKVYREAFNGLIGASSYSV------------GKKL  260 (625)
T ss_pred             HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHh---hheeeHHhhhhhhhHHHhhc------------cHHH
Confidence                   1146689999999999999999999999999887   56889999999998765433            2568


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH----HHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHH
Q 014860          242 FKQMVNDGIEPDIFSLNSMIKGYILSNHVND----ALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKN-ARELCDEM  316 (417)
Q Consensus       242 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m  316 (417)
                      ..+|....+.||..|+|+++.+..+.|+++.    |.+++.+|++ .|+.|...+|..+|..+++.++..+ |.-++.++
T Consensus       261 v~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKe-iGVePsLsSyh~iik~f~re~dp~k~as~~i~dI  339 (625)
T KOG4422|consen  261 VAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKE-IGVEPSLSSYHLIIKNFKRESDPQKVASSWINDI  339 (625)
T ss_pred             HHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHH-hCCCcchhhHHHHHHHhcccCCchhhhHHHHHHH
Confidence            8999999999999999999999999998764    6778899999 8999999999999999999988754 45555555


Q ss_pred             HHC----CCC---C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHHcCCHhHHHH
Q 014860          317 KRK----GFV---P-SSKSYNSLVSALALNGEVEETVKNLWEMIEK----QRPVDF---ITYRTVLDEICRRGRAGEAMK  381 (417)
Q Consensus       317 ~~~----g~~---p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~---~~~~~li~~~~~~g~~~~A~~  381 (417)
                      ...    .++   | |...|...+..|.+..+.+-|.++-.-+...    -+.|+.   .-|..+..+.|.....+..+.
T Consensus       340 ~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~  419 (625)
T KOG4422|consen  340 QNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLK  419 (625)
T ss_pred             HHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432    222   2 4556788888899999999888877666543    123332   245677778888889999999


Q ss_pred             HHHHHHHCCC-CChhhHHHHHHHHHhhcCc
Q 014860          382 LLKELQNKNL-IDGYTYTKLLDVLEDDFGN  410 (417)
Q Consensus       382 ~~~~m~~~~~-p~~~t~~~ll~~~~~~~~~  410 (417)
                      .|+.|.-.-+ |+..+...+++++.-....
T Consensus       420 ~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~  449 (625)
T KOG4422|consen  420 WYEDLVPSAYFPHSQTMIHLLRALDVANRL  449 (625)
T ss_pred             HHHHhccceecCCchhHHHHHHHHhhcCcc
Confidence            9999988876 8888888888887655433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.56  E-value=2.3e-12  Score=119.63  Aligned_cols=278  Identities=14%  Similarity=0.141  Sum_probs=223.4

Q ss_pred             CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860          102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIY  181 (417)
Q Consensus       102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  181 (417)
                      +.|..|...+..+|+...|++-|+++.+..  +.=...|-.|...|...+.+++|...+.......+  .....+..+..
T Consensus       219 iawsnLg~~f~~~Gei~~aiq~y~eAvkld--P~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp--n~A~a~gNla~  294 (966)
T KOG4626|consen  219 IAWSNLGCVFNAQGEIWLAIQHYEEAVKLD--PNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP--NHAVAHGNLAC  294 (966)
T ss_pred             eeehhcchHHhhcchHHHHHHHHHHhhcCC--CcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC--cchhhccceEE
Confidence            467777778888899999999888886543  23356788888889999999999998888877654  46778888888


Q ss_pred             HHHHhCCHHHHHHHHHHhHhCCCCCCCCC-HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860          182 FFAEARKLSRAVYVFKYMKNSRNLECRPS-IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM  260 (417)
Q Consensus       182 ~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  260 (417)
                      .|-..|++|-|+..|++..+.     .|+ ...|+.|..++-..|+        +.+|++.|.+..... .--....+.|
T Consensus       295 iYyeqG~ldlAI~~Ykral~~-----~P~F~~Ay~NlanALkd~G~--------V~ea~~cYnkaL~l~-p~hadam~NL  360 (966)
T KOG4626|consen  295 IYYEQGLLDLAIDTYKRALEL-----QPNFPDAYNNLANALKDKGS--------VTEAVDCYNKALRLC-PNHADAMNNL  360 (966)
T ss_pred             EEeccccHHHHHHHHHHHHhc-----CCCchHHHhHHHHHHHhccc--------hHHHHHHHHHHHHhC-CccHHHHHHH
Confidence            899999999999999998875     554 6789999999999999        999999999888764 3345678889


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcC
Q 014860          261 IKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALALNG  339 (417)
Q Consensus       261 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g  339 (417)
                      -..|...|.+++|..+|....+.  .+--...++.|...|-..|++++|..-+++...  +.|+ ...|+.+-..|-..|
T Consensus       361 gni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g  436 (966)
T KOG4626|consen  361 GNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMG  436 (966)
T ss_pred             HHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhh
Confidence            99999999999999999887651  223456788999999999999999999998876  6777 478899999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHH
Q 014860          340 EVEETVKNLWEMIEKQRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDV  403 (417)
Q Consensus       340 ~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~  403 (417)
                      +++.|...+.+.+..  .|.- ..++.|...|-..|++.+|..-+++..+...--...|-.++.+
T Consensus       437 ~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~  499 (966)
T KOG4626|consen  437 DVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC  499 (966)
T ss_pred             hHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence            999999999888864  4443 4778899999999999999999999888765222333444433

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.55  E-value=4.1e-14  Score=127.61  Aligned_cols=261  Identities=16%  Similarity=0.165  Sum_probs=111.8

Q ss_pred             HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 014860          107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA  186 (417)
Q Consensus       107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  186 (417)
                      +...+.+.|++++|++++........-+.|..-|..+.......+++++|.+.++.+...+.  .+...+..++.. ...
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~--~~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK--ANPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccccc-ccc
Confidence            35556788999999999965422221133455555566667789999999999999998765  456677888887 799


Q ss_pred             CCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHH
Q 014860          187 RKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG-IEPDIFSLNSMIKGYI  265 (417)
Q Consensus       187 g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~  265 (417)
                      +++++|.++++..-+.     .++...+..++..+...++        ++++.++++.+.... .+.+...|..+...+.
T Consensus        91 ~~~~~A~~~~~~~~~~-----~~~~~~l~~~l~~~~~~~~--------~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  157 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER-----DGDPRYLLSALQLYYRLGD--------YDEAEELLEKLEELPAAPDSARFWLALAEIYE  157 (280)
T ss_dssp             --------------------------------H-HHHTT---------HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred             cccccccccccccccc-----ccccchhhHHHHHHHHHhH--------HHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            9999999999887665     3566778889999999999        999999999987533 3567788888999999


Q ss_pred             hcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860          266 LSNHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEET  344 (417)
Q Consensus       266 ~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  344 (417)
                      +.|+.++|.+.+++..+.   .| |....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|
T Consensus       158 ~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~A  233 (280)
T PF13429_consen  158 QLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEA  233 (280)
T ss_dssp             HCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred             HcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccc
Confidence            999999999999998763   35 57788899999999999999999998887763 44556788999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          345 VKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       345 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      +.+|++..+. .+.|......+..++...|+.++|.++..+...
T Consensus       234 l~~~~~~~~~-~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  234 LEYLEKALKL-NPDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHHHH-STT-HHHHHHHHHHHT-----------------
T ss_pred             cccccccccc-ccccccccccccccccccccccccccccccccc
Confidence            9999998875 344777888999999999999999999876543

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.54  E-value=7.5e-11  Score=126.12  Aligned_cols=181  Identities=10%  Similarity=0.017  Sum_probs=129.9

Q ss_pred             ChhHHHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHH------------HHHHHHHccCCh
Q 014860           87 DDTQFRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYH------------IMTRKLGAAKMY  153 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~------------~li~~~~~~~~~  153 (417)
                      ....+.+.+...|+. ..+..+..++.+.|++++|+..|+.+.+...-.+....+.            .....+.+.|++
T Consensus       288 A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~  367 (1157)
T PRK11447        288 AIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNL  367 (1157)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCH
Confidence            445566777766643 4566677788899999999999998875432122222221            123456788999


Q ss_pred             hHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH--------------
Q 014860          154 QEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT--------------  219 (417)
Q Consensus       154 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~--------------  219 (417)
                      ++|.+.++++.+...  .+...+..+...|...|++++|++.|++..+..    +.+...+..+..              
T Consensus       368 ~eA~~~~~~Al~~~P--~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~----p~~~~a~~~L~~l~~~~~~~~A~~~l  441 (1157)
T PRK11447        368 AQAERLYQQARQVDN--TDSYAVLGLGDVAMARKDYAAAERYYQQALRMD----PGNTNAVRGLANLYRQQSPEKALAFI  441 (1157)
T ss_pred             HHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999999999988764  566778888999999999999999999998751    223333333332              


Q ss_pred             ----------------------------HHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          220 ----------------------------AFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN  271 (417)
Q Consensus       220 ----------------------------~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  271 (417)
                                                  .+...|+        .++|++.|++..+.. +-+...+..+...|.+.|+++
T Consensus       442 ~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~--------~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~  512 (1157)
T PRK11447        442 ASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK--------WAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRS  512 (1157)
T ss_pred             HhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence                                        2334566        889999999988764 235667778888899999999


Q ss_pred             HHHHHHHHhhh
Q 014860          272 DALRIFHQMGV  282 (417)
Q Consensus       272 ~a~~~~~~m~~  282 (417)
                      +|...++++.+
T Consensus       513 ~A~~~l~~al~  523 (1157)
T PRK11447        513 QADALMRRLAQ  523 (1157)
T ss_pred             HHHHHHHHHHH
Confidence            99999998765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.51  E-value=1.5e-13  Score=123.92  Aligned_cols=254  Identities=15%  Similarity=0.108  Sum_probs=115.7

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHH
Q 014860          142 IMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAF  221 (417)
Q Consensus       142 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~  221 (417)
                      .+...+.+.|++++|.+++.........+.+...|..+...+...++++.|.+.++++...+    +-+...+..++.. 
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~----~~~~~~~~~l~~l-   87 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD----KANPQDYERLIQL-   87 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----ccccccccccccc-
Confidence            45677889999999999996654443111567777788888888999999999999998762    2245567777777 


Q ss_pred             HhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHH
Q 014860          222 LSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLC  301 (417)
Q Consensus       222 ~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~  301 (417)
                      ...++        .++|.+++++..+.  .++...+..++..+.+.++++++.++++..........+...|..+...+.
T Consensus        88 ~~~~~--------~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~  157 (280)
T PF13429_consen   88 LQDGD--------PEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYE  157 (280)
T ss_dssp             ----------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHH
T ss_pred             ccccc--------cccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            68888        99999999887655  356777888999999999999999999998764455678889999999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 014860          302 AQGRTKNARELCDEMKRKGFVP-SSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAM  380 (417)
Q Consensus       302 ~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  380 (417)
                      +.|+.++|++.+++..+.  .| |....+.++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++|+
T Consensus       158 ~~G~~~~A~~~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al  234 (280)
T PF13429_consen  158 QLGDPDKALRDYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEAL  234 (280)
T ss_dssp             HCCHHHHHHHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHH
T ss_pred             HcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccc
Confidence            999999999999999986  34 57788999999999999999999998887763 455667888999999999999999


Q ss_pred             HHHHHHHHCCCCChhhHHHHHHHHHhhcCcccc
Q 014860          381 KLLKELQNKNLIDGYTYTKLLDVLEDDFGNSIR  413 (417)
Q Consensus       381 ~~~~~m~~~~~p~~~t~~~ll~~~~~~~~~~~~  413 (417)
                      ..|++....+..|......+-+++...+..+..
T Consensus       235 ~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A  267 (280)
T PF13429_consen  235 EYLEKALKLNPDDPLWLLAYADALEQAGRKDEA  267 (280)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHT--------
T ss_pred             ccccccccccccccccccccccccccccccccc
Confidence            999999987666888888888888877554443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.50  E-value=3.5e-10  Score=121.05  Aligned_cols=263  Identities=13%  Similarity=0.035  Sum_probs=189.7

Q ss_pred             HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH----------
Q 014860          109 NVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT----------  178 (417)
Q Consensus       109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~----------  178 (417)
                      ..+...|++++|+..|+.+.+..  +.+...+..+...+...|++++|++.+++..+...  .+...+..          
T Consensus       359 ~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p--~~~~a~~~L~~l~~~~~~  434 (1157)
T PRK11447        359 DAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP--GNTNAVRGLANLYRQQSP  434 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHhcCH
Confidence            34567899999999999987654  45677788888899999999999999999887653  23333322          


Q ss_pred             --------------------------------HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860          179 --------------------------------IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK  226 (417)
Q Consensus       179 --------------------------------li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~  226 (417)
                                                      +...+...|++++|++.|++..+.    -+-+...+..+...|.+.|+
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~----~P~~~~~~~~LA~~~~~~G~  510 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL----DPGSVWLTYRLAQDLRQAGQ  510 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC
Confidence                                            233455679999999999999875    13356678888999999999


Q ss_pred             ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC----------------------
Q 014860          227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY----------------------  284 (417)
Q Consensus       227 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----------------------  284 (417)
                              .++|...|+++.+.. +-+...+..+...+...|+.++|...++.+....                      
T Consensus       511 --------~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~  581 (1157)
T PRK11447        511 --------RSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETAN  581 (1157)
T ss_pred             --------HHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHH
Confidence                    999999999988653 2233333333333344445555544444331100                      


Q ss_pred             ----------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860          285 ----------------NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNL  348 (417)
Q Consensus       285 ----------------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  348 (417)
                                      ..+.+...+..+...+.+.|++++|++.|++..+.. +.+...+..+...|...|+.++|.+.+
T Consensus       582 ~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l  660 (1157)
T PRK11447        582 RLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQL  660 (1157)
T ss_pred             HHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence                            012344566777888889999999999999988763 336788899999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          349 WEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       349 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      +...+. -+.+..++..+..++...|++++|.++++++....
T Consensus       661 ~~ll~~-~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~  701 (1157)
T PRK11447        661 AKLPAT-ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA  701 (1157)
T ss_pred             HHHhcc-CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence            987764 12344566677788889999999999999988764

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.50  E-value=1e-10  Score=110.55  Aligned_cols=255  Identities=11%  Similarity=0.052  Sum_probs=201.0

Q ss_pred             HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHH--HHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 014860          109 NVMTLQEDPLVCLELFNWASKQPRFRHDASTYH--IMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA  186 (417)
Q Consensus       109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  186 (417)
                      .+..+.|+++.|.+.+..+.+.   .|+...+.  .....+...|++++|.+.++.+.+..+  .+......+...|.+.
T Consensus       126 ~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P--~~~~al~ll~~~~~~~  200 (398)
T PRK10747        126 EAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAP--RHPEVLRLAEQAYIRT  200 (398)
T ss_pred             HHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHH
Confidence            3337889999999999999643   45654443  335678899999999999999988875  6788999999999999


Q ss_pred             CCHHHHHHHHHHhHhCCCCCCCCCH-------HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860          187 RKLSRAVYVFKYMKNSRNLECRPSI-------RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS  259 (417)
Q Consensus       187 g~~~~a~~~~~~m~~~~~~g~~p~~-------~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  259 (417)
                      |++++|.+++..+.+..   ..++.       .+|..++.......+        .+...++++.+.+. .+.+......
T Consensus       201 gdw~~a~~~l~~l~k~~---~~~~~~~~~l~~~a~~~l~~~~~~~~~--------~~~l~~~w~~lp~~-~~~~~~~~~~  268 (398)
T PRK10747        201 GAWSSLLDILPSMAKAH---VGDEEHRAMLEQQAWIGLMDQAMADQG--------SEGLKRWWKNQSRK-TRHQVALQVA  268 (398)
T ss_pred             HhHHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHHHHHHHHHhcC--------HHHHHHHHHhCCHH-HhCCHHHHHH
Confidence            99999999999999873   22211       233444444444444        67777777776443 2457788899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860          260 MIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNG  339 (417)
Q Consensus       260 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g  339 (417)
                      +..++...|+.++|.+++++..+.   .++..  -.++.+....++.+++.+..+...+.. +-|...+..+-..|.+.|
T Consensus       269 ~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~~l~l~lgrl~~~~~  342 (398)
T PRK10747        269 MAEHLIECDDHDTAQQIILDGLKR---QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTPLLWSTLGQLLMKHG  342 (398)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhc---CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCC
Confidence            999999999999999999888662   34442  223445556699999999999998763 336677889999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          340 EVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       340 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      ++++|.+.|+...+.  .|+..+|..+...+.+.|+.++|.+++++-..
T Consensus       343 ~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        343 EWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            999999999999985  79999999999999999999999999987644

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.45  E-value=3.1e-10  Score=97.99  Aligned_cols=289  Identities=14%  Similarity=0.167  Sum_probs=181.2

Q ss_pred             CChhHHHHHHhcCCCCCCHH-HHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHH--HHHHHHHccCChhHHHHHHHH
Q 014860           86 LDDTQFRCAVSELPPRFNNE-ELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYH--IMTRKLGAAKMYQEMDDVVNQ  162 (417)
Q Consensus        86 ~~~~~~~~~l~~~p~~~~~~-~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--~li~~~~~~~~~~~a~~~~~~  162 (417)
                      .+.+.|...+..-|..+-.+ +|.+.+.+.|..+.|+++.+.+...++..-+.....  .+..-|...|-+|.|+++|..
T Consensus        53 KAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~  132 (389)
T COG2956          53 KAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQ  132 (389)
T ss_pred             hHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence            35555666666655554333 355556777788888888877766655444433332  244556777888888888887


Q ss_pred             HHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC-HHHHHHHHHHHHhcCCccchhhhhHHHHHHH
Q 014860          163 MLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS-IRSYNILFTAFLSRGKNTYINHVYMETIRCL  241 (417)
Q Consensus       163 m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~  241 (417)
                      +.+.+.  --......|+..|-...+|++|+++-+++.+.++-..... ...|.-+...+....+        .+.|..+
T Consensus       133 L~de~e--fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~--------~d~A~~~  202 (389)
T COG2956         133 LVDEGE--FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD--------VDRAREL  202 (389)
T ss_pred             Hhcchh--hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh--------HHHHHHH
Confidence            777655  3445666777778888888888887777776521111111 2235555555555666        7777777


Q ss_pred             HHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014860          242 FKQMVNDGIEPDIFSL-NSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG  320 (417)
Q Consensus       242 ~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  320 (417)
                      +....+.+  |+.+-- -.+-+.....|++..|.+.++...+ .+..--..+...|..+|...|+.++...++.++.+..
T Consensus       203 l~kAlqa~--~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~e-Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~  279 (389)
T COG2956         203 LKKALQAD--KKCVRASIILGRVELAKGDYQKAVEALERVLE-QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN  279 (389)
T ss_pred             HHHHHhhC--ccceehhhhhhHHHHhccchHHHHHHHHHHHH-hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            77776653  333222 2344566677888888888887776 4444445566777788888888888888888777653


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---HcCCHhHHHHHHHHHHHCCC
Q 014860          321 FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC---RRGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       321 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~---~~g~~~~A~~~~~~m~~~~~  391 (417)
                      ..++  .-..+-..-....-.+.|..++.+-..+  +|+...+..||..-.   ..|..++.+.+++.|....+
T Consensus       280 ~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l  349 (389)
T COG2956         280 TGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQL  349 (389)
T ss_pred             CCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHH
Confidence            3333  3333434334444455666655554443  588888888887653   34557777778888876654

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.45  E-value=1.4e-09  Score=109.94  Aligned_cols=143  Identities=9%  Similarity=0.104  Sum_probs=80.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHH
Q 014860          261 IKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG-----FVPSSKSYNSLVSAL  335 (417)
Q Consensus       261 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~~~~~li~~~  335 (417)
                      +-++...|++.++.+.|+.+.. .+.+....+-.++.++|...+++++|+.++..+....     ..++......|.-+|
T Consensus       299 l~aL~~r~r~~~vi~~y~~l~~-~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~  377 (822)
T PRK14574        299 LGALLVRHQTADLIKEYEAMEA-EGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSL  377 (822)
T ss_pred             HHHHHHhhhHHHHHHHHHHhhh-cCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHH
Confidence            3445556666666666666665 4444444556666666777777777777777665432     122333345666666


Q ss_pred             HhcCCHHHHHHHHHHHHHcCC-----------CCCH--H-HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHH
Q 014860          336 ALNGEVEETVKNLWEMIEKQR-----------PVDF--I-TYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLL  401 (417)
Q Consensus       336 ~~~g~~~~A~~~~~~m~~~g~-----------~p~~--~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll  401 (417)
                      ...+++++|..+++.+.+.--           .||.  . .+..++..+.-.|+..+|++.++++.....-|......+-
T Consensus       378 ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A  457 (822)
T PRK14574        378 NESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALA  457 (822)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            677777777777776665200           1221  1 2233455566667777777777776555433444444443


Q ss_pred             HHH
Q 014860          402 DVL  404 (417)
Q Consensus       402 ~~~  404 (417)
                      +.+
T Consensus       458 ~v~  460 (822)
T PRK14574        458 SIY  460 (822)
T ss_pred             HHH
Confidence            333

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.45  E-value=1.9e-09  Score=110.43  Aligned_cols=291  Identities=9%  Similarity=0.023  Sum_probs=183.3

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF  183 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~  183 (417)
                      +..+...+...+++++|+++|+...+..  +.+...+..+...+...|++++|...++++.+..+  .+.. +..+..++
T Consensus        52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P--~~~~-~~~la~~l  126 (765)
T PRK10049         52 YAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAP--DKAN-LLALAYVY  126 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHH-HHHHHHHH
Confidence            5667777788889999999998876543  45677777788888889999999999998887754  4555 88888888


Q ss_pred             HHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchh--------------------------------
Q 014860          184 AEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYIN--------------------------------  231 (417)
Q Consensus       184 ~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~--------------------------------  231 (417)
                      ...|+.++|+..++++.+.    .+.+...+..+...+...+....+.                                
T Consensus       127 ~~~g~~~~Al~~l~~al~~----~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~  202 (765)
T PRK10049        127 KRAGRHWDELRAMTQALPR----APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPT  202 (765)
T ss_pred             HHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccc
Confidence            8889999999999888875    1334455555555555544421000                                


Q ss_pred             ------hhhHHHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHhcCCHHHHHHHHHHhhhhCCC-CCCHHHHHHHHH
Q 014860          232 ------HVYMETIRCLFKQMVND-GIEPDIF-SL----NSMIKGYILSNHVNDALRIFHQMGVVYNY-LPNSFSYDYLIH  298 (417)
Q Consensus       232 ------~~~~~~a~~~~~~m~~~-g~~p~~~-~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~~li~  298 (417)
                            ....++|++.++.+.+. ...|+.. .+    ...+.++...|++++|...|+.+.+ .+- .|+. .-..+..
T Consensus       203 ~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~-~~~~~P~~-a~~~la~  280 (765)
T PRK10049        203 RSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKA-EGQIIPPW-AQRWVAS  280 (765)
T ss_pred             cChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhc-cCCCCCHH-HHHHHHH
Confidence                  00014566666666643 1122221 11    1113344566788888888888776 231 1322 1122456


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCCC---HH
Q 014860          299 GLCAQGRTKNARELCDEMKRKGFVP---SSKSYNSLVSALALNGEVEETVKNLWEMIEKQ-----------RPVD---FI  361 (417)
Q Consensus       299 ~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p~---~~  361 (417)
                      +|...|++++|+..|+++.+.....   .......+..++.+.|++++|..+++.+.+..           -.|+   ..
T Consensus       281 ~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~  360 (765)
T PRK10049        281 AYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQ  360 (765)
T ss_pred             HHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHH
Confidence            7778888888888888876542111   12345556667778888888888888777641           1122   12


Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860          362 TYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLE  405 (417)
Q Consensus       362 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~  405 (417)
                      .+..+...+...|+.++|+++++++.....-+...+..+...+.
T Consensus       361 a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~  404 (765)
T PRK10049        361 GQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQ  404 (765)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34456667777788888888888777664335555555555443

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.45  E-value=1.1e-09  Score=112.13  Aligned_cols=299  Identities=11%  Similarity=0.019  Sum_probs=209.0

Q ss_pred             ChhHHHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860           87 DDTQFRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA  165 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  165 (417)
                      ....+.+.+...|... .+..+...+...|++++|+..++.+.+..  +.+.. +..+..++...|+.++|...++++.+
T Consensus        68 A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~--P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~  144 (765)
T PRK10049         68 SLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGA--PDKAN-LLALAYVYKRAGRHWDELRAMTQALP  144 (765)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            4455666776666654 34556667788999999999999987654  45666 88888889999999999999999998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH----------------------------------------------Hh
Q 014860          166 TPSFCGTEALYNTIIYFFAEARKLSRAVYVFK----------------------------------------------YM  199 (417)
Q Consensus       166 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~----------------------------------------------~m  199 (417)
                      ..+  .+...+..+..++...|..+.|++.++                                              .+
T Consensus       145 ~~P--~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~l  222 (765)
T PRK10049        145 RAP--QTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDAL  222 (765)
T ss_pred             hCC--CCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHH
Confidence            765  456666667777777777666655554                                              33


Q ss_pred             HhCCCCCCCCCHH-H----HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 014860          200 KNSRNLECRPSIR-S----YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-PDIFSLNSMIKGYILSNHVNDA  273 (417)
Q Consensus       200 ~~~~~~g~~p~~~-~----~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a  273 (417)
                      .+.-  .-.|+.. .    ....+..+...|+        .++|+..|+.+.+.+.+ |+. .-..+...|...|++++|
T Consensus       223 l~~~--~~~p~~~~~~~~a~~d~l~~Ll~~g~--------~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A  291 (765)
T PRK10049        223 EALW--HDNPDATADYQRARIDRLGALLARDR--------YKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKA  291 (765)
T ss_pred             Hhhc--ccCCccchHHHHHHHHHHHHHHHhhh--------HHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHH
Confidence            2210  0011111 1    1111334456677        99999999999987632 332 222356789999999999


Q ss_pred             HHHHHHhhhhCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHh
Q 014860          274 LRIFHQMGVVYNYL--PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGF-----------VPS---SKSYNSLVSALAL  337 (417)
Q Consensus       274 ~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----------~p~---~~~~~~li~~~~~  337 (417)
                      +..|+.+.+.....  ........+..++...|++++|..+++.+.+...           .|+   ...+..+...+..
T Consensus       292 ~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~  371 (765)
T PRK10049        292 QSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKY  371 (765)
T ss_pred             HHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHH
Confidence            99999986522111  1134566777788999999999999999987521           133   2345667788889


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHH
Q 014860          338 NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLD  402 (417)
Q Consensus       338 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~  402 (417)
                      .|+.++|+++++++... .+-+...+..+...+...|+.++|++.+++......-+...+.....
T Consensus       372 ~g~~~eA~~~l~~al~~-~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~  435 (765)
T PRK10049        372 SNDLPQAEMRARELAYN-APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAW  435 (765)
T ss_pred             cCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHH
Confidence            99999999999999876 34466788888889999999999999999988876324443333333

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.45  E-value=5.6e-11  Score=110.68  Aligned_cols=247  Identities=14%  Similarity=0.114  Sum_probs=189.2

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHH
Q 014860          139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNIL  217 (417)
Q Consensus       139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~l  217 (417)
                      .|..|...+-..|+..+|.+-|++..+.++  .-...|-.|...|...+.+++|+..|.+....     .| ..+.+..|
T Consensus       220 awsnLg~~f~~~Gei~~aiq~y~eAvkldP--~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-----rpn~A~a~gNl  292 (966)
T KOG4626|consen  220 AWSNLGCVFNAQGEIWLAIQHYEEAVKLDP--NFLDAYINLGNVYKEARIFDRAVSCYLRALNL-----RPNHAVAHGNL  292 (966)
T ss_pred             eehhcchHHhhcchHHHHHHHHHHhhcCCC--cchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-----CCcchhhccce
Confidence            344444455567777777777777766653  22456777788888888888888888777754     34 45667777


Q ss_pred             HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHH
Q 014860          218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLI  297 (417)
Q Consensus       218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li  297 (417)
                      ...|-..|.        +|.|+..|++..+.. +--...|+.|-.++-..|++.+|++.+......  ...-....+.|-
T Consensus       293 a~iYyeqG~--------ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p~hadam~NLg  361 (966)
T KOG4626|consen  293 ACIYYEQGL--------LDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CPNHADAMNNLG  361 (966)
T ss_pred             EEEEecccc--------HHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence            777888888        999999999988763 223678999999999999999999999988652  223456788899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCC
Q 014860          298 HGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFI-TYRTVLDEICRRGR  375 (417)
Q Consensus       298 ~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~  375 (417)
                      ..|...|++++|..+|....+-  .|. ...+|.|...|-++|++++|+..+++.+.  ++|+.. .|+.+-..|-..|+
T Consensus       362 ni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~  437 (966)
T KOG4626|consen  362 NIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGD  437 (966)
T ss_pred             HHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhh
Confidence            9999999999999999988764  444 46789999999999999999999999886  577764 88999999999999


Q ss_pred             HhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          376 AGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       376 ~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                      ++.|.+.+.+.+..+..=....+.|-..+.+.
T Consensus       438 v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDs  469 (966)
T KOG4626|consen  438 VSAAIQCYTRAIQINPTFAEAHSNLASIYKDS  469 (966)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHhhHHHHhhcc
Confidence            99999999998887643344455555555443

>TIGR00540 hemY_coli hemY protein

Probab=99.44  E-value=7.8e-10  Score=105.09  Aligned_cols=279  Identities=11%  Similarity=0.015  Sum_probs=193.5

Q ss_pred             hhHHHHHHhcCCCCCCH-HHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHH--HHHHHHHHHHccCChhHHHHHHHHHH
Q 014860           88 DTQFRCAVSELPPRFNN-EELCNVMTLQEDPLVCLELFNWASKQPRFRHDAS--TYHIMTRKLGAAKMYQEMDDVVNQML  164 (417)
Q Consensus        88 ~~~~~~~l~~~p~~~~~-~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~  164 (417)
                      ...+.+..+..|++..+ -...++....|+++.|.+.+..+.+..   |+..  ..-.....+...|++++|.+.++.+.
T Consensus       104 ~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~---p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~  180 (409)
T TIGR00540       104 EKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA---GNDNILVEIARTRILLAQNELHAARHGVDKLL  180 (409)
T ss_pred             HHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CcCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            33445555555544333 233455678899999999999885433   4433  33334777888999999999999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH-HHHHHH---HhcCCccchhhhhHHHHHH
Q 014860          165 ATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN-ILFTAF---LSRGKNTYINHVYMETIRC  240 (417)
Q Consensus       165 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~-~li~~~---~~~g~~~~~~~~~~~~a~~  240 (417)
                      +..+  .+..+...+...|.+.|++++|.+.+..+.+.   +.. +...+. .-..++   ...+.        .++..+
T Consensus       181 ~~~P--~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~---~~~-~~~~~~~l~~~a~~~~l~~~~--------~~~~~~  246 (409)
T TIGR00540       181 EMAP--RHKEVLKLAEEAYIRSGAWQALDDIIDNMAKA---GLF-DDEEFADLEQKAEIGLLDEAM--------ADEGID  246 (409)
T ss_pred             HhCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc---CCC-CHHHHHHHHHHHHHHHHHHHH--------HhcCHH
Confidence            8874  56778889999999999999999999999986   333 333231 111222   22222        233333


Q ss_pred             HHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHH
Q 014860          241 LFKQMVNDGI---EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS---YDYLIHGLCAQGRTKNARELCD  314 (417)
Q Consensus       241 ~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~l~~  314 (417)
                      .+..+.+...   +.+...+..+...+...|+.++|.+++++..+.   .||...   ...........++.+.+.+.++
T Consensus       247 ~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e  323 (409)
T TIGR00540       247 GLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKPEDNEKLEKLIE  323 (409)
T ss_pred             HHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCCCChHHHHHHHH
Confidence            4444443321   137788888999999999999999999998763   244432   1222223344577888888888


Q ss_pred             HHHHCCCCCC-H--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          315 EMKRKGFVPS-S--KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       315 ~m~~~g~~p~-~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      ...+.  .|+ .  ....++-..|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-..
T Consensus       324 ~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       324 KQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             HHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            87765  333 3  556688899999999999999999644444578999899999999999999999999997543

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PF13041 PPR_2: PPR repeat family

Probab=99.44  E-value=3.2e-13  Score=86.82  Aligned_cols=49  Identities=39%  Similarity=0.769  Sum_probs=22.9

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014860          288 PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALA  336 (417)
Q Consensus       288 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~  336 (417)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||++||++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            3444444444444444444444444444444444444444444444443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.44  E-value=1e-09  Score=94.78  Aligned_cols=275  Identities=13%  Similarity=0.062  Sum_probs=204.4

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC--HHHHHHHHHHHHHhCCHH
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT--EALYNTIIYFFAEARKLS  190 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~  190 (417)
                      -++++++|+++|-.|.+..  +-+.++.-.+.+.|-+.|.+|.|+.+++.+.+.+...-+  ....-.|.+-|..+|-+|
T Consensus        47 Ls~Q~dKAvdlF~e~l~~d--~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D  124 (389)
T COG2956          47 LSNQPDKAVDLFLEMLQED--PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD  124 (389)
T ss_pred             hhcCcchHHHHHHHHHhcC--chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence            4578999999999997644  456666677888999999999999999999998654111  234456778899999999


Q ss_pred             HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHh
Q 014860          191 RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI----FSLNSMIKGYIL  266 (417)
Q Consensus       191 ~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~  266 (417)
                      +|..+|..+.+.+    ..-......|+..|-...+        |++|+++-+++.+.+-.+..    .-|--+-..+..
T Consensus       125 RAE~~f~~L~de~----efa~~AlqqLl~IYQ~tre--------W~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~  192 (389)
T COG2956         125 RAEDIFNQLVDEG----EFAEGALQQLLNIYQATRE--------WEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALA  192 (389)
T ss_pred             HHHHHHHHHhcch----hhhHHHHHHHHHHHHHhhH--------HHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhh
Confidence            9999999999852    2335667889999999999        99999999999987644332    223344455556


Q ss_pred             cCCHHHHHHHHHHhhhhCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860          267 SNHVNDALRIFHQMGVVYNYLPNSFSY-DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETV  345 (417)
Q Consensus       267 ~g~~~~a~~~~~~m~~~~~~~~~~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  345 (417)
                      ..+++.|..++.+..+.   .|+.+-- -.+-......|+++.|.+.++...+.+..--..+...|..+|.+.|+.++..
T Consensus       193 ~~~~d~A~~~l~kAlqa---~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~  269 (389)
T COG2956         193 SSDVDRARELLKKALQA---DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGL  269 (389)
T ss_pred             hhhHHHHHHHHHHHHhh---CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHH
Confidence            78899999999887652   2333322 3344567889999999999999999865555677889999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          346 KNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       346 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                      ..+.++.+..  +....-..|-..-....-.+.|...+.+-..+. |+...+..++..=..+
T Consensus       270 ~fL~~~~~~~--~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~-Pt~~gf~rl~~~~l~d  328 (389)
T COG2956         270 NFLRRAMETN--TGADAELMLADLIELQEGIDAAQAYLTRQLRRK-PTMRGFHRLMDYHLAD  328 (389)
T ss_pred             HHHHHHHHcc--CCccHHHHHHHHHHHhhChHHHHHHHHHHHhhC-CcHHHHHHHHHhhhcc
Confidence            9999998873  333333444444445556677777777666653 6777777777654433

>PF13041 PPR_2: PPR repeat family

Probab=99.44  E-value=3.8e-13  Score=86.45  Aligned_cols=50  Identities=30%  Similarity=0.549  Sum_probs=42.2

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014860          323 PSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR  372 (417)
Q Consensus       323 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  372 (417)
                      ||..+||++|.+|++.|++++|.++|++|.+.|++||..||+.||++|++
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78888888888888888888888888888888888888888888888764

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.43  E-value=2.9e-09  Score=109.92  Aligned_cols=233  Identities=11%  Similarity=-0.046  Sum_probs=178.7

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN  215 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~  215 (417)
                      +...|..+..++.. ++.++|...+.......   |+......+...+.+.|++++|...|+++...     +|+...+.
T Consensus       476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~-----~p~~~a~~  546 (987)
T PRK09782        476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAWQHRAVAYQAYQVEDYATALAAWQKISLH-----DMSNEDLL  546 (987)
T ss_pred             CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCCcHHHH
Confidence            67777877777776 78888988777776654   44444444455556899999999999988654     45556677


Q ss_pred             HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 014860          216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDY  295 (417)
Q Consensus       216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~  295 (417)
                      .+...+.+.|+        .++|.+.+++..+.. +.+...+..+.....+.|++++|...+++..+.   .|+...|..
T Consensus       547 ~la~all~~Gd--------~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~  614 (987)
T PRK09782        547 AAANTAQAAGN--------GAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNI---APSANAYVA  614 (987)
T ss_pred             HHHHHHHHCCC--------HHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCCHHHHHH
Confidence            77788888999        999999999988764 223333333344445569999999999888752   467888888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860          296 LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR  375 (417)
Q Consensus       296 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  375 (417)
                      +...+.+.|++++|+..+++..+... -+...++.+-.++...|+.++|...+++..+. .+-+...+..+..++...|+
T Consensus       615 LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l-~P~~~~a~~nLA~al~~lGd  692 (987)
T PRK09782        615 RATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREMLERAHKG-LPDDPALIRQLAYVNQRLDD  692 (987)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCCC
Confidence            89999999999999999999887642 25677788888899999999999999988875 23356678888889999999


Q ss_pred             HhHHHHHHHHHHHCCC
Q 014860          376 AGEAMKLLKELQNKNL  391 (417)
Q Consensus       376 ~~~A~~~~~~m~~~~~  391 (417)
                      +++|+..|++..+...
T Consensus       693 ~~eA~~~l~~Al~l~P  708 (987)
T PRK09782        693 MAATQHYARLVIDDID  708 (987)
T ss_pred             HHHHHHHHHHHHhcCC
Confidence            9999999999887653

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.43  E-value=1.5e-09  Score=102.70  Aligned_cols=271  Identities=10%  Similarity=0.049  Sum_probs=205.4

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHH-HHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHH--HHHHHHHHhCCH
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIM-TRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYN--TIIYFFAEARKL  189 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~--~li~~~~~~g~~  189 (417)
                      ..|+++.|.+......+.   .+++..+..+ ..+..+.|+++.+.+.+.++.+..   |+.....  .....+...|++
T Consensus        96 ~eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~~~~~l~~a~l~l~~g~~  169 (398)
T PRK10747         96 AEGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELA---DNDQLPVEITRVRIQLARNEN  169 (398)
T ss_pred             hCCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHCCCH
Confidence            469999999888776432   2233444333 445589999999999999998765   4433322  446788999999


Q ss_pred             HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-------HHHHHHHH
Q 014860          190 SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-------FSLNSMIK  262 (417)
Q Consensus       190 ~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~  262 (417)
                      +.|.+.++++.+.    -+-+......+...|.+.|+        +++|.+++..+.+.+..++.       .+|..++.
T Consensus       170 ~~Al~~l~~~~~~----~P~~~~al~ll~~~~~~~gd--------w~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~  237 (398)
T PRK10747        170 HAARHGVDKLLEV----APRHPEVLRLAEQAYIRTGA--------WSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMD  237 (398)
T ss_pred             HHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHHHh--------HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999986    24467889999999999999        99999999999988755332       13334444


Q ss_pred             HHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          263 GYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE  342 (417)
Q Consensus       263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  342 (417)
                      ......+.+...++++...+.  .+.+......+..++...|+.++|.+++++..+.  .||....  ++.+....++.+
T Consensus       238 ~~~~~~~~~~l~~~w~~lp~~--~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~--~l~~~l~~~~~~  311 (398)
T PRK10747        238 QAMADQGSEGLKRWWKNQSRK--TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLV--LLIPRLKTNNPE  311 (398)
T ss_pred             HHHHhcCHHHHHHHHHhCCHH--HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHH--HHHhhccCCChH
Confidence            444555667777777777552  3467888899999999999999999999999874  4555322  344445669999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhcC
Q 014860          343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFG  409 (417)
Q Consensus       343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~~  409 (417)
                      ++.+..+...+. .+-|...+.++-..|.+.|++++|.+.|+...+.. |+..+|..+-..+.+.+.
T Consensus       312 ~al~~~e~~lk~-~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~-P~~~~~~~La~~~~~~g~  376 (398)
T PRK10747        312 QLEKVLRQQIKQ-HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR-PDAYDYAWLADALDRLHK  376 (398)
T ss_pred             HHHHHHHHHHhh-CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcCC
Confidence            999999998876 33455667888899999999999999999999864 777777777777776633

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.40  E-value=6.3e-10  Score=96.96  Aligned_cols=201  Identities=13%  Similarity=0.013  Sum_probs=132.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC
Q 014860          173 EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP  252 (417)
Q Consensus       173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p  252 (417)
                      ...+..+...|...|++++|...+++..+.    .+.+...+..+...+...|+        +++|.+.+++..+.. +.
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~----~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~-~~   97 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEH----DPDDYLAYLALALYYQQLGE--------LEKAEDSFRRALTLN-PN   97 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC-CC
Confidence            455666666777777777777777776653    12345566666677777777        777777777666554 33


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860          253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLV  332 (417)
Q Consensus       253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li  332 (417)
                      +...+..+...+...|++++|.+.++..............+..+...+...|++++|...+.+..+.. +.+...+..+.
T Consensus        98 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la  176 (234)
T TIGR02521        98 NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELA  176 (234)
T ss_pred             CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHH
Confidence            44556666666777777777777777765522222234456666667777777777777777776653 22455677777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          333 SALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      ..+...|++++|...+++..+. .+.+...+..+...+...|+.++|..+.+.+..
T Consensus       177 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       177 ELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            7777788888888888777765 334556666667777777888888777776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>TIGR00540 hemY_coli hemY protein

Probab=99.39  E-value=3.2e-09  Score=100.92  Aligned_cols=284  Identities=10%  Similarity=-0.009  Sum_probs=199.9

Q ss_pred             HHHHHHH--hccCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860          105 EELCNVM--TLQEDPLVCLELFNWASKQPRFRHDA-STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIY  181 (417)
Q Consensus       105 ~~ll~~l--~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  181 (417)
                      ..+.+++  ...|+++.|.+.+....+.   .|+. ..+-....+..+.|+.+.+.+.+....+.... +.....-....
T Consensus        86 ~~~~~glla~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~-~~l~~~~~~a~  161 (409)
T TIGR00540        86 KQTEEALLKLAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGN-DNILVEIARTR  161 (409)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc-CchHHHHHHHH
Confidence            3344444  4789999999999887543   3543 34445567788899999999999998765432 33344455688


Q ss_pred             HHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH-HHH
Q 014860          182 FFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL-NSM  260 (417)
Q Consensus       182 ~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~l  260 (417)
                      .+...|+++.|...++.+.+.    .+-+...+..+...+...|+        +++|.+++..+.+.++. +...+ ..-
T Consensus       162 l~l~~~~~~~Al~~l~~l~~~----~P~~~~~l~ll~~~~~~~~d--------~~~a~~~l~~l~k~~~~-~~~~~~~l~  228 (409)
T TIGR00540       162 ILLAQNELHAARHGVDKLLEM----APRHKEVLKLAEEAYIRSGA--------WQALDDIIDNMAKAGLF-DDEEFADLE  228 (409)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHHcCCC-CHHHHHHHH
Confidence            899999999999999999986    24467789999999999999        99999999999998754 33333 222


Q ss_pred             HHHH---HhcCCHHHHHHHHHHhhhhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH---HHHHH
Q 014860          261 IKGY---ILSNHVNDALRIFHQMGVVY--NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS---YNSLV  332 (417)
Q Consensus       261 i~~~---~~~g~~~~a~~~~~~m~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~---~~~li  332 (417)
                      ..++   ...+..+.+.+.+..+-...  ....+...+..+...+...|+.++|.+++++..+..  ||...   .....
T Consensus       229 ~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~  306 (409)
T TIGR00540       229 QKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLP  306 (409)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHH
Confidence            2222   22233333333444443311  112478889999999999999999999999999863  33321   12222


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhhc
Q 014860          333 SALALNGEVEETVKNLWEMIEKQRPVDF---ITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDDF  408 (417)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~~  408 (417)
                      ......++.+.+.+.++...+.  .|+.   ....++-..+.+.|++++|.+.|+....... |+...+..+-..+.+.+
T Consensus       307 ~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g  384 (409)
T TIGR00540       307 IPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAG  384 (409)
T ss_pred             hhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcC
Confidence            2334467888999999887765  3333   4556788899999999999999996444333 77778888877777664


Q ss_pred             C
Q 014860          409 G  409 (417)
Q Consensus       409 ~  409 (417)
                      .
T Consensus       385 ~  385 (409)
T TIGR00540       385 D  385 (409)
T ss_pred             C
Confidence            3

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.38  E-value=3.3e-09  Score=109.57  Aligned_cols=276  Identities=11%  Similarity=-0.038  Sum_probs=206.0

Q ss_pred             hHHHHHHhcCCC--C-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860           89 TQFRCAVSELPP--R-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA  165 (417)
Q Consensus        89 ~~~~~~l~~~p~--~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  165 (417)
                      ..+...+...|+  . ..|..+..++.. +++.+|+..|.......   |+......+...+...|++++|...++.+..
T Consensus       462 ~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~---Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~  537 (987)
T PRK09782        462 PAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ---PDAWQHRAVAYQAYQVEDYATALAAWQKISL  537 (987)
T ss_pred             HHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC---CchHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence            334445554444  2 234444455544 78999999887775443   5655544455666799999999999999876


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHH
Q 014860          166 TPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQM  245 (417)
Q Consensus       166 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m  245 (417)
                      .+   |+...+..+...+.+.|++++|...|+...+.   . +.+...+..+.......|+        +++|...+++.
T Consensus       538 ~~---p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l---~-P~~~~l~~~La~~l~~~Gr--------~~eAl~~~~~A  602 (987)
T PRK09782        538 HD---MSNEDLLAAANTAQAAGNGAARDRWLQQAEQR---G-LGDNALYWWLHAQRYIPGQ--------PELALNDLTRS  602 (987)
T ss_pred             cC---CCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---C-CccHHHHHHHHHHHHhCCC--------HHHHHHHHHHH
Confidence            64   44455667788899999999999999999875   1 2333334444445556699        99999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014860          246 VNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS  325 (417)
Q Consensus       246 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  325 (417)
                      .+..  |+...+..+...+.+.|++++|.+.+++....  -+.+...++.+...+...|+.++|+..+++..+... -+.
T Consensus       603 L~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~  677 (987)
T PRK09782        603 LNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDP  677 (987)
T ss_pred             HHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCH
Confidence            8764  67889999999999999999999999998762  234567788888899999999999999999988632 367


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      ..+..+..++...|++++|+..+++..+.  .|+. .+.-.......+..+++.|.+-+++-...+
T Consensus       678 ~a~~nLA~al~~lGd~~eA~~~l~~Al~l--~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~  741 (987)
T PRK09782        678 ALIRQLAYVNQRLDDMAATQHYARLVIDD--IDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFS  741 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcC
Confidence            88999999999999999999999999875  4544 344445555666777777777766655443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.37  E-value=1.1e-08  Score=103.69  Aligned_cols=300  Identities=11%  Similarity=-0.007  Sum_probs=208.4

Q ss_pred             CCCCCCHHHHH---HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHH
Q 014860           98 LPPRFNNEELC---NVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEA  174 (417)
Q Consensus        98 ~p~~~~~~~ll---~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  174 (417)
                      .|.+..+..+.   ..+...|+++.|+++|+.+.+..  +-+...+..++..+...++.++|.+.++.+....   |+..
T Consensus        96 ~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d---p~~~  170 (822)
T PRK14574         96 SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERD---PTVQ  170 (822)
T ss_pred             cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC---cchH
Confidence            34444444333   35567789999999999887655  4556777777788888899999998888887765   4555


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC----------------------------
Q 014860          175 LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK----------------------------  226 (417)
Q Consensus       175 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~----------------------------  226 (417)
                      .+-.++..+...++..+|++.++++.+..    +-+...+..++.++.+.|-                            
T Consensus       171 ~~l~layL~~~~~~~~~AL~~~ekll~~~----P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~  246 (822)
T PRK14574        171 NYMTLSYLNRATDRNYDALQASSEAVRLA----PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAA  246 (822)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHH
Confidence            55555555555666666888888887751    1123333333333332222                            


Q ss_pred             -------------------------------------cc-c---------------hhhhhHHHHHHHHHHHHHCCCCCC
Q 014860          227 -------------------------------------NT-Y---------------INHVYMETIRCLFKQMVNDGIEPD  253 (417)
Q Consensus       227 -------------------------------------~~-~---------------~~~~~~~~a~~~~~~m~~~g~~p~  253 (417)
                                                           .+ .               ..+..+.++++.|+.|...|.+..
T Consensus       247 a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P  326 (822)
T PRK14574        247 AEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMP  326 (822)
T ss_pred             HHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCC
Confidence                                                 00 0               000116677777777777776666


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---------
Q 014860          254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYN----YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG---------  320 (417)
Q Consensus       254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---------  320 (417)
                      ..+-.++.++|...++.++|+.+++.+....+    ..++......|..+|...+++++|..+++.+.+.-         
T Consensus       327 ~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~  406 (822)
T PRK14574        327 DYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGL  406 (822)
T ss_pred             HHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCC
Confidence            77888999999999999999999999865322    23345556789999999999999999999999731         


Q ss_pred             ----CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChh
Q 014860          321 ----FVPSSK-SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGY  395 (417)
Q Consensus       321 ----~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~  395 (417)
                          ..||-. .+..++..+.-.|+..+|++.++++... -+-|......+...+...|.+.+|++.++.......-+..
T Consensus       407 ~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~-aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~  485 (822)
T PRK14574        407 PGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST-APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLI  485 (822)
T ss_pred             CCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHH
Confidence                123333 3445677788999999999999999876 4558888899999999999999999999777766433555


Q ss_pred             hHHHHHHHHHhh
Q 014860          396 TYTKLLDVLEDD  407 (417)
Q Consensus       396 t~~~ll~~~~~~  407 (417)
                      +......+..+.
T Consensus       486 ~~~~~~~~al~l  497 (822)
T PRK14574        486 LERAQAETAMAL  497 (822)
T ss_pred             HHHHHHHHHHhh
Confidence            555555444433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.35  E-value=3.6e-10  Score=106.46  Aligned_cols=268  Identities=13%  Similarity=0.077  Sum_probs=154.3

Q ss_pred             cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHhCCHHH-
Q 014860          114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF-CGTEALYNTIIYFFAEARKLSR-  191 (417)
Q Consensus       114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~-  191 (417)
                      .-+.++|+..|.......  .-+......+.++|-..+++++|+++|+.+.+.... ..+..+|.+.+-.+-+.=.+.- 
T Consensus       332 ~y~~~~A~~~~~klp~h~--~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~L  409 (638)
T KOG1126|consen  332 QYNCREALNLFEKLPSHH--YNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYL  409 (638)
T ss_pred             HHHHHHHHHHHHhhHHhc--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHH
Confidence            345788999998854322  345566777888999999999999999999886532 2456666666654433221111 


Q ss_pred             HHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          192 AVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN  271 (417)
Q Consensus       192 a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  271 (417)
                      |..+.+.++        -...+|.++-.+|.-.++        .+.|++.|++..+.. +-..++|+.+-.-+.....+|
T Consensus       410 aq~Li~~~~--------~sPesWca~GNcfSLQkd--------h~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d  472 (638)
T KOG1126|consen  410 AQDLIDTDP--------NSPESWCALGNCFSLQKD--------HDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFD  472 (638)
T ss_pred             HHHHHhhCC--------CCcHHHHHhcchhhhhhH--------HHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHH
Confidence            222222222        235666677666666666        666776666666543 225566666655566666666


Q ss_pred             HHHHHHHHhhhhCCCCCCHHHHHH---HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860          272 DALRIFHQMGVVYNYLPNSFSYDY---LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNL  348 (417)
Q Consensus       272 ~a~~~~~~m~~~~~~~~~~~~~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  348 (417)
                      .|...|+....     .|...||+   +-..|.+.++++.|+-.|+...+-+.. +.+....+...+-+.|+.|+|++++
T Consensus       473 ~a~~~fr~Al~-----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~  546 (638)
T KOG1126|consen  473 KAMKSFRKALG-----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLY  546 (638)
T ss_pred             hHHHHHHhhhc-----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHH
Confidence            66666665543     44444443   344466666666666666666553322 3444455555566666666666666


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          349 WEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       349 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                      ++..... +-|+..--..+..+...++.++|++.++++++.-.-+...|..+-+.|.+-
T Consensus       547 ~~A~~ld-~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~  604 (638)
T KOG1126|consen  547 EKAIHLD-PKNPLCKYHRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRL  604 (638)
T ss_pred             HHHHhcC-CCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence            6665542 123333233344555566666666666666664222444444444554443

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.33  E-value=3e-09  Score=92.64  Aligned_cols=202  Identities=13%  Similarity=0.070  Sum_probs=157.3

Q ss_pred             CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860          135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY  214 (417)
Q Consensus       135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~  214 (417)
                      .....+..+...+...|++++|.+.+++..+...  .+...+..+...|...|++++|.+.|++..+.    .+.+...+
T Consensus        29 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~  102 (234)
T TIGR02521        29 KAAKIRVQLALGYLEQGDLEVAKENLDKALEHDP--DDYLAYLALALYYQQLGELEKAEDSFRRALTL----NPNNGDVL  102 (234)
T ss_pred             cHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh----CCCCHHHH
Confidence            3466777778888889999999999988877653  45677888888888999999999999888875    23456677


Q ss_pred             HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH
Q 014860          215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY  293 (417)
Q Consensus       215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  293 (417)
                      ..+...+...|+        +++|.+.+++..+.... .....+..+...+...|++++|.+.+++....  .+.+...+
T Consensus       103 ~~~~~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~  172 (234)
T TIGR02521       103 NNYGTFLCQQGK--------YEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI--DPQRPESL  172 (234)
T ss_pred             HHHHHHHHHccc--------HHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCChHHH
Confidence            888888888888        89999999888764322 23456666777888899999999999888762  22346677


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          294 DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       294 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      ..+...+...|++++|...+++..+. ...+...+..+...+...|+.++|..+.+.+..
T Consensus       173 ~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       173 LELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            88888888999999999999988776 344667777788888888999999888877765

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.33  E-value=6.9e-11  Score=114.13  Aligned_cols=82  Identities=20%  Similarity=0.206  Sum_probs=48.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHH
Q 014860          322 VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKL  400 (417)
Q Consensus       322 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~l  400 (417)
                      .|+..+|.+++.+-..+|+++.|..++.+|+++|++.+.+-|..|+-+   .|+...+..++.-|...|+ |+..|+...
T Consensus       201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady  277 (1088)
T KOG4318|consen  201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY  277 (1088)
T ss_pred             CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence            356666666666666666666666666666666666666555555544   5555566666666666666 566666555


Q ss_pred             HHHHHh
Q 014860          401 LDVLED  406 (417)
Q Consensus       401 l~~~~~  406 (417)
                      +..+.+
T Consensus       278 vip~l~  283 (1088)
T KOG4318|consen  278 VIPQLS  283 (1088)
T ss_pred             HHhhhc
Confidence            554444

>PRK12370 invasion protein regulator; Provisional

Probab=99.33  E-value=2.4e-09  Score=105.67  Aligned_cols=248  Identities=12%  Similarity=0.069  Sum_probs=128.4

Q ss_pred             hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH---------ccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860          117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLG---------AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR  187 (417)
Q Consensus       117 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g  187 (417)
                      .++|+++|+...+..  +-+...|..+..++.         ..+++++|...+++..+..+  .+...+..+...+...|
T Consensus       277 ~~~A~~~~~~Al~ld--P~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP--~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        277 LQQALKLLTQCVNMS--PNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDH--NNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHhcC--CccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHcc
Confidence            456666666665433  223444444433322         22335666666666666553  45566666666666666


Q ss_pred             CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860          188 KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS  267 (417)
Q Consensus       188 ~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  267 (417)
                      ++++|...|++..+.    -+.+...|..+...+...|+        +++|...+++..+.... +...+..+...+...
T Consensus       353 ~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~l~~~G~--------~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~  419 (553)
T PRK12370        353 EYIVGSLLFKQANLL----SPISADIKYYYGWNLFMAGQ--------LEEALQTINECLKLDPT-RAAAGITKLWITYYH  419 (553)
T ss_pred             CHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhc
Confidence            777777777666654    12234556666666666666        66677776666655311 122222333344556


Q ss_pred             CCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHH
Q 014860          268 NHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALALNGEVEETV  345 (417)
Q Consensus       268 g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~  345 (417)
                      |++++|.+.+++.... . .| +...+..+..++...|+.++|...+.++...  .|+ ....+.+...|+..|  ++|.
T Consensus       420 g~~eeA~~~~~~~l~~-~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~  493 (553)
T PRK12370        420 TGIDDAIRLGDELRSQ-H-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERAL  493 (553)
T ss_pred             cCHHHHHHHHHHHHHh-c-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHH
Confidence            6666666666665431 1 12 2334555555666667777776666665443  222 233344444555555  3555


Q ss_pred             HHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          346 KNLWEMIEK-QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       346 ~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      ..++.+.+. ...+....+  +-..|.-.|+-+.+..+ +++.+.+
T Consensus       494 ~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~  536 (553)
T PRK12370        494 PTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNED  536 (553)
T ss_pred             HHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence            555555543 112222222  22233444554444444 6665554

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.32  E-value=1.7e-08  Score=89.86  Aligned_cols=256  Identities=11%  Similarity=0.072  Sum_probs=157.2

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA  192 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a  192 (417)
                      ..|++.+|.++..... +.+ .-..-.|..-..+..+.|+.+.+-..+.+.-+.... ++....-+..+.....|+++.|
T Consensus        96 ~eG~~~qAEkl~~rna-e~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~-~~l~v~ltrarlll~~~d~~aA  172 (400)
T COG3071          96 FEGDFQQAEKLLRRNA-EHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGD-DTLAVELTRARLLLNRRDYPAA  172 (400)
T ss_pred             hcCcHHHHHHHHHHhh-hcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCC-chHHHHHHHHHHHHhCCCchhH
Confidence            4677888888777763 332 223444555556667778888888888877776444 6666777777777788888888


Q ss_pred             HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHH
Q 014860          193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-------FSLNSMIKGYI  265 (417)
Q Consensus       193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~  265 (417)
                      ..-.+++.+..    +...........+|.+.|+        +..+..+...|.+.|+--|.       .+|+.++.-..
T Consensus       173 ~~~v~~ll~~~----pr~~~vlrLa~r~y~~~g~--------~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~  240 (400)
T COG3071         173 RENVDQLLEMT----PRHPEVLRLALRAYIRLGA--------WQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQAR  240 (400)
T ss_pred             HHHHHHHHHhC----cCChHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHh
Confidence            77777777652    4456777778888888888        78888888888777754433       24555555554


Q ss_pred             hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------------
Q 014860          266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS---------------------  324 (417)
Q Consensus       266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------------  324 (417)
                      ..+..+.-...+++...+  ...+...-.+++.-+.++|+.++|.++.++..+++..|+                     
T Consensus       241 ~~~~~~gL~~~W~~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e  318 (400)
T COG3071         241 DDNGSEGLKTWWKNQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAE  318 (400)
T ss_pred             ccccchHHHHHHHhccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHH
Confidence            444444444455554432  223344444555566666666666666666555544433                     


Q ss_pred             ---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860          325 ---------SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQ  387 (417)
Q Consensus       325 ---------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  387 (417)
                               ...+.+|-..|.+.+.|.+|...|+...+.  .|+..+|+.+.+++.+.|+..+|.++.++-.
T Consensus       319 ~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L  388 (400)
T COG3071         319 KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL  388 (400)
T ss_pred             HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence                     233455555566666666666666644443  4566666666666666666666666655543

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.25  E-value=4e-10  Score=109.01  Aligned_cols=257  Identities=13%  Similarity=0.096  Sum_probs=176.1

Q ss_pred             ChhHHHHHHhcCCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcC
Q 014860           87 DDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT  166 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  166 (417)
                      +.-...+.....|++.+|..++.-||..|+.+.|- +|..| +....+.+...|+.++....++++.+.+.         
T Consensus        11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm-~~ksLpv~e~vf~~lv~sh~~And~Enpk---------   79 (1088)
T KOG4318|consen   11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFM-EIKSLPVREGVFRGLVASHKEANDAENPK---------   79 (1088)
T ss_pred             hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhh-hcccccccchhHHHHHhcccccccccCCC---------
Confidence            44445677788899999999999999999999998 99999 45567888999999999999999887665         


Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHH---HHHHHHHhHhC-CCCCCCCCHHHHH--------------HHHHHHHhcCCcc
Q 014860          167 PSFCGTEALYNTIIYFFAEARKLSR---AVYVFKYMKNS-RNLECRPSIRSYN--------------ILFTAFLSRGKNT  228 (417)
Q Consensus       167 ~~~~~~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~-~~~g~~p~~~~~~--------------~li~~~~~~g~~~  228 (417)
                        . |...+|..|..+|.+.||+..   +.+.++.+... ...|+---..-+-              ..+......|.  
T Consensus        80 --e-p~aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~egl--  154 (1088)
T KOG4318|consen   80 --E-PLADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGL--  154 (1088)
T ss_pred             --C-CchhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHH--
Confidence              2 888999999999999999654   33322222221 0011111111111              12222222222  


Q ss_pred             chhhhhHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          229 YINHVYMETIRCLFKQMVNDG-IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTK  307 (417)
Q Consensus       229 ~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~  307 (417)
                            ++.+++++..+.... ..|-.+    ++.-+..  ++...+++....+.-.+ .|+..+|.+++.+-..+|+.+
T Consensus       155 ------waqllkll~~~Pvsa~~~p~~v----fLrqnv~--~ntpvekLl~~cksl~e-~~~s~~l~a~l~~alaag~~d  221 (1088)
T KOG4318|consen  155 ------WAQLLKLLAKVPVSAWNAPFQV----FLRQNVV--DNTPVEKLLNMCKSLVE-APTSETLHAVLKRALAAGDVD  221 (1088)
T ss_pred             ------HHHHHHHHhhCCcccccchHHH----HHHHhcc--CCchHHHHHHHHHHhhc-CCChHHHHHHHHHHHhcCchh
Confidence                  444444444332111 011111    2332222  23445555555554223 699999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860          308 NARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR  375 (417)
Q Consensus       308 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  375 (417)
                      .|..++.+|++.|+..+..-|-.|+.+   .++...+..++..|.+.|+.|+..|+...+..+...|.
T Consensus       222 ~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~  286 (1088)
T KOG4318|consen  222 GAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ  286 (1088)
T ss_pred             hHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence            999999999999999888888888776   78888888999999999999999999877777766444

>PRK12370 invasion protein regulator; Provisional

Probab=99.22  E-value=3.5e-08  Score=97.50  Aligned_cols=248  Identities=13%  Similarity=0.048  Sum_probs=178.8

Q ss_pred             CCHHHHHHHHHHHH-----ccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---------hCCHHHHHHHHHHhH
Q 014860          135 HDASTYHIMTRKLG-----AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE---------ARKLSRAVYVFKYMK  200 (417)
Q Consensus       135 ~~~~~~~~li~~~~-----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~  200 (417)
                      .+...|...+++..     ..+.+++|.+.+++..+..+  .+...|..+..+|..         .+++++|...+++..
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP--~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al  331 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSP--NSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT  331 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence            45666667666642     23456899999999998764  455666666655542         244899999999998


Q ss_pred             hCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014860          201 NSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQM  280 (417)
Q Consensus       201 ~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  280 (417)
                      +..    +-+...|..+-..+...|+        +++|...|++..+.+ +.+...+..+-..+...|++++|...+++.
T Consensus       332 ~ld----P~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~A  398 (553)
T PRK12370        332 ELD----HNNPQALGLLGLINTIHSE--------YIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINEC  398 (553)
T ss_pred             hcC----CCCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            852    3467788888888999999        999999999999875 445677888889999999999999999998


Q ss_pred             hhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 014860          281 GVVYNYLPNS-FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD  359 (417)
Q Consensus       281 ~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  359 (417)
                      .+.   .|+. ..+..++..+...|++++|...+++..+...+-+...+..+..++...|+.++|...+.++...  .|+
T Consensus       399 l~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~  473 (553)
T PRK12370        399 LKL---DPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EIT  473 (553)
T ss_pred             Hhc---CCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cch
Confidence            763   2432 2333445557778999999999999876532224555777888889999999999999987664  444


Q ss_pred             HH-HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CChhhHHHHHHHH
Q 014860          360 FI-TYRTVLDEICRRGRAGEAMKLLKELQNKNL--IDGYTYTKLLDVL  404 (417)
Q Consensus       360 ~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~~~  404 (417)
                      .. ..+.+...|+..|  ++|...++.+.+..-  +....+..++.++
T Consensus       474 ~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~  519 (553)
T PRK12370        474 GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPLVLVA  519 (553)
T ss_pred             hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHHHHHH
Confidence            43 3445555667777  488888888766432  3333334444444

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.22  E-value=3.6e-09  Score=99.79  Aligned_cols=259  Identities=13%  Similarity=0.067  Sum_probs=201.5

Q ss_pred             HHHHHHHhccCChhHHHHHHHHhhcCCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860          105 EELCNVMTLQEDPLVCLELFNWASKQPRF-RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF  183 (417)
Q Consensus       105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~  183 (417)
                      ..+..+|-..+++++|.++|+.+++.... -.+.+.|..++-.+-+.-   +--.+-+.+.+...  -.+.+|.++..+|
T Consensus       357 ~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v---~Ls~Laq~Li~~~~--~sPesWca~GNcf  431 (638)
T KOG1126|consen  357 SQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEV---ALSYLAQDLIDTDP--NSPESWCALGNCF  431 (638)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhH---HHHHHHHHHHhhCC--CCcHHHHHhcchh
Confidence            34667777889999999999999765443 457888888876653211   11122333333332  4578999999999


Q ss_pred             HHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHH---
Q 014860          184 AEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS---  259 (417)
Q Consensus       184 ~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---  259 (417)
                      .-.++.+.|++.|++....     .| ...+|+.+-.-+....+        +|.|...|+...    ..|...||+   
T Consensus       432 SLQkdh~~Aik~f~RAiQl-----dp~faYayTLlGhE~~~~ee--------~d~a~~~fr~Al----~~~~rhYnAwYG  494 (638)
T KOG1126|consen  432 SLQKDHDTAIKCFKRAIQL-----DPRFAYAYTLLGHESIATEE--------FDKAMKSFRKAL----GVDPRHYNAWYG  494 (638)
T ss_pred             hhhhHHHHHHHHHHHhhcc-----CCccchhhhhcCChhhhhHH--------HHhHHHHHHhhh----cCCchhhHHHHh
Confidence            9999999999999999875     45 67888888888888888        999999998877    567777776   


Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860          260 MIKGYILSNHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN  338 (417)
Q Consensus       260 li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~  338 (417)
                      +-..|.+.++++.|+-.|+...+   +.| +.+....+...+-+.|+.++|++++++......+ |...--.-...+...
T Consensus       495 lG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~  570 (638)
T KOG1126|consen  495 LGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSL  570 (638)
T ss_pred             hhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhh
Confidence            45678899999999999998865   334 5666677777888999999999999999876544 444444456677788


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860          339 GEVEETVKNLWEMIEKQRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       339 g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  391 (417)
                      ++.++|+..++++++-  .|+. ..|..+...|-+.|+.+.|+.-|.-+.+.+.
T Consensus       571 ~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp  622 (638)
T KOG1126|consen  571 GRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP  622 (638)
T ss_pred             cchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence            9999999999999985  4554 5677788899999999999999988887765

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.20  E-value=2.6e-07  Score=90.30  Aligned_cols=261  Identities=11%  Similarity=0.052  Sum_probs=157.3

Q ss_pred             CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 014860          115 EDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVY  194 (417)
Q Consensus       115 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  194 (417)
                      |+.++|.+++..+.++.  +.....|-.|...|-..|+.+++...+-..-...+  .|...|-.+.....+.|++++|.-
T Consensus       153 g~~eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p--~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  153 GDLEEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNP--KDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             CCHHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCC--CChHHHHHHHHHHHhcccHHHHHH
Confidence            66777777777666554  45666677777777777776666655544433322  455666666666666677777777


Q ss_pred             HHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHhcCCH
Q 014860          195 VFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN----SMIKGYILSNHV  270 (417)
Q Consensus       195 ~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~li~~~~~~g~~  270 (417)
                      .|.+..+..    +++...+---...|-+.|+        ...|...|.++.+...+.|..-+.    .++..+...++.
T Consensus       229 cy~rAI~~~----p~n~~~~~ers~L~~~~G~--------~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~  296 (895)
T KOG2076|consen  229 CYSRAIQAN----PSNWELIYERSSLYQKTGD--------LKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNER  296 (895)
T ss_pred             HHHHHHhcC----CcchHHHHHHHHHHHHhCh--------HHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHH
Confidence            776666641    3344444444555666666        666666666666543222222222    223334445555


Q ss_pred             HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--------------------------------
Q 014860          271 NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR--------------------------------  318 (417)
Q Consensus       271 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--------------------------------  318 (417)
                      +.|.+.++....+.+-..+...++.++..+.+...++.|......+..                                
T Consensus       297 e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~  376 (895)
T KOG2076|consen  297 ERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSY  376 (895)
T ss_pred             HHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCc
Confidence            555555555443333334444555555555555555555555544443                                


Q ss_pred             -----------------------------CCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014860          319 -----------------------------KGF--VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVL  367 (417)
Q Consensus       319 -----------------------------~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  367 (417)
                                                   ..+  .-+...|.-+..+|...|++++|+++|..+...-..-+...|..+.
T Consensus       377 ~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a  456 (895)
T KOG2076|consen  377 DLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA  456 (895)
T ss_pred             cchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence                                         221  1123345667778888888888888888888774445567888888


Q ss_pred             HHHHHcCCHhHHHHHHHHHHHCCC
Q 014860          368 DEICRRGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       368 ~~~~~~g~~~~A~~~~~~m~~~~~  391 (417)
                      .+|-..|..++|.+.|+.......
T Consensus       457 ~c~~~l~e~e~A~e~y~kvl~~~p  480 (895)
T KOG2076|consen  457 RCYMELGEYEEAIEFYEKVLILAP  480 (895)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhcCC
Confidence            888888888888888888877653

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.18  E-value=1e-07  Score=86.54  Aligned_cols=216  Identities=12%  Similarity=0.022  Sum_probs=163.8

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP  252 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p  252 (417)
                      .|...+.+-|+-.++.++|+..|++..+-     .| ....|+.|-.-|....+        ...|.+-++...+-. +.
T Consensus       331 ETCCiIaNYYSlr~eHEKAv~YFkRALkL-----Np~~~~aWTLmGHEyvEmKN--------t~AAi~sYRrAvdi~-p~  396 (559)
T KOG1155|consen  331 ETCCIIANYYSLRSEHEKAVMYFKRALKL-----NPKYLSAWTLMGHEYVEMKN--------THAAIESYRRAVDIN-PR  396 (559)
T ss_pred             cceeeehhHHHHHHhHHHHHHHHHHHHhc-----CcchhHHHHHhhHHHHHhcc--------cHHHHHHHHHHHhcC-ch
Confidence            45555666677778889999999998874     34 46678889899999988        889999999888765 56


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860          253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLV  332 (417)
Q Consensus       253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li  332 (417)
                      |-..|--|-.+|.-.+.+.-|+-.|++..+  --+-|...|.+|-++|.+.++.++|++-|.+....|-. +...+..|.
T Consensus       397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~La  473 (559)
T KOG1155|consen  397 DYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLA  473 (559)
T ss_pred             hHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHH
Confidence            778888899999999999999999988865  22358889999999999999999999999998877633 567889999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc----CCCCCH--HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHh
Q 014860          333 SALALNGEVEETVKNLWEMIEK----QRPVDF--ITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED  406 (417)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~m~~~----g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~  406 (417)
                      ..|-+.++..+|...|.+-.+.    |..-+.  ..-.-|..-+.+.+++++|.......... -+...-=+.|++.+.+
T Consensus       474 kLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~-~~e~eeak~LlReir~  552 (559)
T KOG1155|consen  474 KLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG-ETECEEAKALLREIRK  552 (559)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC-CchHHHHHHHHHHHHH
Confidence            9999999999998888876653    333222  22233555677888998888776666555 2334445566666654


Q ss_pred             h
Q 014860          407 D  407 (417)
Q Consensus       407 ~  407 (417)
                      .
T Consensus       553 ~  553 (559)
T KOG1155|consen  553 I  553 (559)
T ss_pred             h
Confidence            4

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.1e-07  Score=86.27  Aligned_cols=248  Identities=13%  Similarity=0.075  Sum_probs=175.3

Q ss_pred             CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHhCCHHH-HHHHHHHhHhCCCCCCC
Q 014860          131 PRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC-GTEALYNTIIYFFAEARKLSR-AVYVFKYMKNSRNLECR  208 (417)
Q Consensus       131 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~g~~  208 (417)
                      .|++-+...-+....+.-...++++|+.+|+++.+.++.. .|..+|+.++-.--.+..+.- |..++. +.+     .+
T Consensus       256 ~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-idK-----yR  329 (559)
T KOG1155|consen  256 VGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-IDK-----YR  329 (559)
T ss_pred             ccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hcc-----CC
Confidence            3444444444444444445666666666666666654321 345555555543332222221 222211 111     12


Q ss_pred             CCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC
Q 014860          209 PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP  288 (417)
Q Consensus       209 p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~  288 (417)
                        ..|...+.+-|.-.++        .++|...|++..+.+ +-....|+.+-.-|....+...|.+-++...+  -.+.
T Consensus       330 --~ETCCiIaNYYSlr~e--------HEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~  396 (559)
T KOG1155|consen  330 --PETCCIIANYYSLRSE--------HEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPR  396 (559)
T ss_pred             --ccceeeehhHHHHHHh--------HHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCch
Confidence              2445556666666666        999999999999876 44577888898999999999999999998876  3356


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014860          289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLD  368 (417)
Q Consensus       289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  368 (417)
                      |-..|-.|-++|.-.+...=|+-.|++...-. +-|...|.+|-.+|.+.++.++|.+.|......|- .+...+..|.+
T Consensus       397 DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~Lak  474 (559)
T KOG1155|consen  397 DYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAK  474 (559)
T ss_pred             hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHH
Confidence            88899999999999999999999999988753 33789999999999999999999999999998763 36678999999


Q ss_pred             HHHHcCCHhHHHHHHHHHHH----CCCCChhhHHH
Q 014860          369 EICRRGRAGEAMKLLKELQN----KNLIDGYTYTK  399 (417)
Q Consensus       369 ~~~~~g~~~~A~~~~~~m~~----~~~p~~~t~~~  399 (417)
                      .|-+.++.++|.+.|+.-++    .|..+..|..+
T Consensus       475 Lye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka  509 (559)
T KOG1155|consen  475 LYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKA  509 (559)
T ss_pred             HHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHH
Confidence            99999999999999887665    34444444333

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.13  E-value=2.5e-08  Score=94.74  Aligned_cols=246  Identities=16%  Similarity=0.116  Sum_probs=177.6

Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcC-----CCCCCCHHH-HHHHHHHHHHhCCHHHHHHHHHHhHhCCC--C
Q 014860          134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT-----PSFCGTEAL-YNTIIYFFAEARKLSRAVYVFKYMKNSRN--L  205 (417)
Q Consensus       134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~  205 (417)
                      +.-..+...+..+|...|+++.|..++....+.     |...+...+ .+.+...|...+++++|..+|+++.....  .
T Consensus       196 P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~  275 (508)
T KOG1840|consen  196 PERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVF  275 (508)
T ss_pred             chHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhc
Confidence            334566777889999999999999999988775     222234333 33477789999999999999999876521  1


Q ss_pred             --CCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-----CCC-CCCHH-HHHHHHHHHHhcCCHHHHHHH
Q 014860          206 --ECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-----DGI-EPDIF-SLNSMIKGYILSNHVNDALRI  276 (417)
Q Consensus       206 --g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-----~g~-~p~~~-~~~~li~~~~~~g~~~~a~~~  276 (417)
                        ..+--..+++.|-.+|.+.|+        +++|...+++..+     .|. .|.+. .++.+...|+..+++++|..+
T Consensus       276 G~~h~~va~~l~nLa~ly~~~GK--------f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l  347 (508)
T KOG1840|consen  276 GEDHPAVAATLNNLAVLYYKQGK--------FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKL  347 (508)
T ss_pred             CCCCHHHHHHHHHHHHHHhccCC--------hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHH
Confidence              112224568888889999999        5555555544332     222 23332 456677888899999999999


Q ss_pred             HHHhhhhCC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC--CCC-HHHHHHHHHHHHhcCCHHH
Q 014860          277 FHQMGVVYN--YLP----NSFSYDYLIHGLCAQGRTKNARELCDEMKRK----GF--VPS-SKSYNSLVSALALNGEVEE  343 (417)
Q Consensus       277 ~~~m~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~--~p~-~~~~~~li~~~~~~g~~~~  343 (417)
                      +....+...  ..+    -..+++.|-..|-..|++++|++++++....    +.  .+. ...++.|-..|.+.+..++
T Consensus       348 ~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~  427 (508)
T KOG1840|consen  348 LQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEE  427 (508)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccch
Confidence            887644221  112    2467899999999999999999999987743    11  222 4567889999999999999


Q ss_pred             HHHHHHHHHH----cCC-CCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860          344 TVKNLWEMIE----KQR-PVDF-ITYRTVLDEICRRGRAGEAMKLLKELQ  387 (417)
Q Consensus       344 A~~~~~~m~~----~g~-~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~  387 (417)
                      |.++|.+...    .|. .|++ .+|..|...|.+.|++++|.++.+...
T Consensus       428 a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  428 AEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            9999887443    232 2343 589999999999999999999988776

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.12  E-value=1.2e-07  Score=85.73  Aligned_cols=273  Identities=14%  Similarity=0.076  Sum_probs=194.9

Q ss_pred             HhccCChhHHHHHHHHhhcCCCCCCCHHHHHH-HHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH
Q 014860          111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHI-MTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL  189 (417)
Q Consensus       111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~-li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~  189 (417)
                      |.++|+++.|++++.-..++.+-..+...-+. +++.+--.+++..|.+.-+.....+.  -+......-.......|++
T Consensus       429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dr--yn~~a~~nkgn~~f~ngd~  506 (840)
T KOG2003|consen  429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDR--YNAAALTNKGNIAFANGDL  506 (840)
T ss_pred             HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccc--cCHHHhhcCCceeeecCcH
Confidence            46889999999999887554432222222222 22333334577788887777766543  2222222222333457899


Q ss_pred             HHHHHHHHHhHhCCCCCCCCCHHHHHHHH---HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860          190 SRAVYVFKYMKNSRNLECRPSIRSYNILF---TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL  266 (417)
Q Consensus       190 ~~a~~~~~~m~~~~~~g~~p~~~~~~~li---~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  266 (417)
                      ++|.+.|++....       |..+-.+|.   -.+-..|+        +++|++.|-.+...- ..+..+.-.+...|-.
T Consensus       507 dka~~~ykeal~n-------dasc~ealfniglt~e~~~~--------ldeald~f~klh~il-~nn~evl~qianiye~  570 (840)
T KOG2003|consen  507 DKAAEFYKEALNN-------DASCTEALFNIGLTAEALGN--------LDEALDCFLKLHAIL-LNNAEVLVQIANIYEL  570 (840)
T ss_pred             HHHHHHHHHHHcC-------chHHHHHHHHhcccHHHhcC--------HHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHH
Confidence            9999999999875       333322222   23556677        999999998765421 3466677778888888


Q ss_pred             cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014860          267 SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVK  346 (417)
Q Consensus       267 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  346 (417)
                      ..+...|.+++-+...  -++.|....+-|...|-+.|+-..|.+.+-+--.- ++-|..+...|...|....-++++..
T Consensus       571 led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~  647 (840)
T KOG2003|consen  571 LEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAIN  647 (840)
T ss_pred             hhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHH
Confidence            8899999999877753  55667888899999999999999998876654432 56688889999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHhHHHHHHHHHHHCCCC-ChhhHHHHHHHHHhh
Q 014860          347 NLWEMIEKQRPVDFITYRTVLDEIC-RRGRAGEAMKLLKELQNKNLI-DGYTYTKLLDVLEDD  407 (417)
Q Consensus       347 ~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~~~p-~~~t~~~ll~~~~~~  407 (417)
                      +|++..-  +.|+..-|..||..|. +.|++.+|..+++....+ +| |......|++.+.+-
T Consensus       648 y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dl  707 (840)
T KOG2003|consen  648 YFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDL  707 (840)
T ss_pred             HHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccc
Confidence            9987654  6899999998887664 689999999999988765 65 888888888877654

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.07  E-value=4.8e-07  Score=80.85  Aligned_cols=246  Identities=12%  Similarity=0.072  Sum_probs=196.7

Q ss_pred             ccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCcc
Q 014860          149 AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNT  228 (417)
Q Consensus       149 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~  228 (417)
                      ..|++.+|+++...-.+.+.  .....|-.-.++-.+.|+.+.+-.++.+..+.   .-.++...+-+........|+  
T Consensus        96 ~eG~~~qAEkl~~rnae~~e--~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~---~~~~~l~v~ltrarlll~~~d--  168 (400)
T COG3071          96 FEGDFQQAEKLLRRNAEHGE--QPVLAYLLAAEAAQQRGDEDRANRYLAEAAEL---AGDDTLAVELTRARLLLNRRD--  168 (400)
T ss_pred             hcCcHHHHHHHHHHhhhcCc--chHHHHHHHHHHHHhcccHHHHHHHHHHHhcc---CCCchHHHHHHHHHHHHhCCC--
Confidence            57999999999999877765  34456667778888999999999999999885   224566778888889999999  


Q ss_pred             chhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCH-------HHHHHHHHHHH
Q 014860          229 YINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNS-------FSYDYLIHGLC  301 (417)
Q Consensus       229 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~-------~~~~~li~~~~  301 (417)
                            .+.|..-.+++.+.+ +-+..+......+|.+.|++.....++..+.+ .+.-.+.       .+|..++.-..
T Consensus       169 ------~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~k-a~~l~~~e~~~le~~a~~glL~q~~  240 (400)
T COG3071         169 ------YPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRK-AGLLSDEEAARLEQQAWEGLLQQAR  240 (400)
T ss_pred             ------chhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHH-ccCCChHHHHHHHHHHHHHHHHHHh
Confidence                  999999999998876 55778899999999999999999999999998 6665554       46777777777


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC------------------------
Q 014860          302 AQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRP------------------------  357 (417)
Q Consensus       302 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~------------------------  357 (417)
                      ..+..+.-...|++.-.+ .+-+...-.+++.-+.++|+.++|.++..+..+++..                        
T Consensus       241 ~~~~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~  319 (400)
T COG3071         241 DDNGSEGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEK  319 (400)
T ss_pred             ccccchHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHH
Confidence            777777666677766544 4446777788888999999999999988876654322                        


Q ss_pred             ------CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhcCcc
Q 014860          358 ------VDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGNS  411 (417)
Q Consensus       358 ------p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~~~~  411 (417)
                            -++..+.+|-..|.+.+.|.+|.+.|+.-.+.+ |+.++|+-+-+++.+.+...
T Consensus       320 ~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-~s~~~~~~la~~~~~~g~~~  378 (400)
T COG3071         320 WLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLR-PSASDYAELADALDQLGEPE  378 (400)
T ss_pred             HHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHcCChH
Confidence                  244667888889999999999999999666543 78899999999998774433

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.07  E-value=7.8e-07  Score=87.06  Aligned_cols=281  Identities=14%  Similarity=0.097  Sum_probs=211.3

Q ss_pred             HHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860           91 FRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF  169 (417)
Q Consensus        91 ~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  169 (417)
                      +.+.+...|.. ..|..|...|-..|+.++++..+-.+...  -+-|...|..+-....+.|++++|.-.+.+.++..+ 
T Consensus       162 ~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p-  238 (895)
T KOG2076|consen  162 LMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARYCYSRAIQANP-  238 (895)
T ss_pred             HHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC-
Confidence            33455555544 57889999999999999999987766432  366889999999999999999999999999999876 


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC-H----HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHH
Q 014860          170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS-I----RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQ  244 (417)
Q Consensus       170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~----~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~  244 (417)
                       ++...+---+..|-+.|+...|..-|.++-..    .+|. .    ..--.++..+...++        .+.|.+.++.
T Consensus       239 -~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~----~p~~d~er~~d~i~~~~~~~~~~~~--------~e~a~~~le~  305 (895)
T KOG2076|consen  239 -SNWELIYERSSLYQKTGDLKRAMETFLQLLQL----DPPVDIERIEDLIRRVAHYFITHNE--------RERAAKALEG  305 (895)
T ss_pred             -cchHHHHHHHHHHHHhChHHHHHHHHHHHHhh----CCchhHHHHHHHHHHHHHHHHHhhH--------HHHHHHHHHH
Confidence             66666667778899999999999999999875    1222 2    222335566777777        6777777777


Q ss_pred             HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh-----------------------------------------
Q 014860          245 MVND-GIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV-----------------------------------------  282 (417)
Q Consensus       245 m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----------------------------------------  282 (417)
                      .... +-..+...++++...|.+...++.|......+..                                         
T Consensus       306 ~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~i  385 (895)
T KOG2076|consen  306 ALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMI  385 (895)
T ss_pred             HHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhh
Confidence            6652 2244556677777777777777766665555433                                         


Q ss_pred             -------------------hCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860          283 -------------------VYN--YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV  341 (417)
Q Consensus       283 -------------------~~~--~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~  341 (417)
                                         ..+  +.-+...|.-+..+|...|++.+|+.+|..+...-..-+...|--+.++|-..|..
T Consensus       386 cL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~  465 (895)
T KOG2076|consen  386 CLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEY  465 (895)
T ss_pred             hhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhH
Confidence                               011  11234456677888999999999999999999875555788999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860          342 EETVKNLWEMIEKQRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       342 ~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~  389 (417)
                      ++|.+.|+.....  .|+. ..--.|-..+-+.|+.++|.+++..|..-
T Consensus       466 e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~  512 (895)
T KOG2076|consen  466 EEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINP  512 (895)
T ss_pred             HHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCC
Confidence            9999999999875  3443 34455667788999999999999997643

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.06  E-value=3.2e-08  Score=85.89  Aligned_cols=230  Identities=11%  Similarity=0.031  Sum_probs=189.3

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH-HHHHH
Q 014860          141 HIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY-NILFT  219 (417)
Q Consensus       141 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~-~~li~  219 (417)
                      +-+.+.|.+.|.+.+|++.++...+.-   |-+.||-.|-..|.+...++.|+.+|.+-.+.     .|..+|| .-+.+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~---~~~dTfllLskvY~ridQP~~AL~~~~~gld~-----fP~~VT~l~g~AR  298 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---PHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-----FPFDVTYLLGQAR  298 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcC---CchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-----CCchhhhhhhhHH
Confidence            346778889999999999998887764   66788999999999999999999999998875     5555554 45667


Q ss_pred             HHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHH
Q 014860          220 AFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHG  299 (417)
Q Consensus       220 ~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~  299 (417)
                      .+-..++        .++|.++|+...+.. +.++....++-.+|.-.++.+.|++.++++.+ .|+ -+...|+.+--+
T Consensus       299 i~eam~~--------~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~-~speLf~NigLC  367 (478)
T KOG1129|consen  299 IHEAMEQ--------QEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGA-QSPELFCNIGLC  367 (478)
T ss_pred             HHHHHHh--------HHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcC-CChHHHhhHHHH
Confidence            7777888        999999999988765 45677777888889999999999999999988 676 566788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 014860          300 LCAQGRTKNARELCDEMKRKGFVPSS--KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAG  377 (417)
Q Consensus       300 ~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  377 (417)
                      |.-.++++-++--|.+....-..|+.  ..|-.+-......|++..|.+.|+-..... .-+...++.|.-.-.+.|+++
T Consensus       368 C~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~  446 (478)
T KOG1129|consen  368 CLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDIL  446 (478)
T ss_pred             HHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchH
Confidence            88899999999999988876555553  457777777788999999999999888762 334568888888888999999


Q ss_pred             HHHHHHHHHHHCC
Q 014860          378 EAMKLLKELQNKN  390 (417)
Q Consensus       378 ~A~~~~~~m~~~~  390 (417)
                      +|..+++......
T Consensus       447 ~Arsll~~A~s~~  459 (478)
T KOG1129|consen  447 GARSLLNAAKSVM  459 (478)
T ss_pred             HHHHHHHHhhhhC
Confidence            9999999887764

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.03  E-value=1.2e-06  Score=79.33  Aligned_cols=149  Identities=14%  Similarity=0.014  Sum_probs=76.7

Q ss_pred             CChhHHHHHHHHhhcCCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860          115 EDPLVCLELFNWASKQPRFRHD--ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA  192 (417)
Q Consensus       115 ~~~~~A~~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a  192 (417)
                      ...+.++.-+..+.......|+  ...|......+...|+.++|...|++..+..+  .+...|+.+...|...|++++|
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P--~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP--DMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHCCCHHHH
Confidence            4455566666555433322222  23344555555566666666666666655543  3455666666666666666666


Q ss_pred             HHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          193 VYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN  271 (417)
Q Consensus       193 ~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  271 (417)
                      ...|+...+.     .| +..+|..+...+...|+        +++|.+.|+...+..  |+..........+...++.+
T Consensus       118 ~~~~~~Al~l-----~P~~~~a~~~lg~~l~~~g~--------~~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~  182 (296)
T PRK11189        118 YEAFDSVLEL-----DPTYNYAYLNRGIALYYGGR--------YELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPK  182 (296)
T ss_pred             HHHHHHHHHh-----CCCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHH
Confidence            6666666553     23 34455555555556666        666666666655442  32221111111223344556


Q ss_pred             HHHHHHHHh
Q 014860          272 DALRIFHQM  280 (417)
Q Consensus       272 ~a~~~~~~m  280 (417)
                      +|.+.|...
T Consensus       183 ~A~~~l~~~  191 (296)
T PRK11189        183 QAKENLKQR  191 (296)
T ss_pred             HHHHHHHHH
Confidence            666655443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.03  E-value=1.2e-06  Score=79.33  Aligned_cols=235  Identities=14%  Similarity=-0.004  Sum_probs=137.2

Q ss_pred             CChhHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCcc
Q 014860          151 KMYQEMDDVVNQMLATPSFCG--TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNT  228 (417)
Q Consensus       151 ~~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~  228 (417)
                      +..+.+..-+.+++......|  ....|..+...|.+.|+.++|...|++..+.    -+.+...|+.+...+...|+  
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l----~P~~~~a~~~lg~~~~~~g~--  113 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL----RPDMADAYNYLGIYLTQAGN--  113 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHCCC--
Confidence            345556666666665432212  2345666667777778888888877777764    13346777777777888887  


Q ss_pred             chhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860          229 YINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKN  308 (417)
Q Consensus       229 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~  308 (417)
                            +++|.+.|+...+.. +-+..+|..+..++...|++++|.+.|+...+.   .|+..........+...++.++
T Consensus       114 ------~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~  183 (296)
T PRK11189        114 ------FDAAYEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQ  183 (296)
T ss_pred             ------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHH
Confidence                  788888887777653 223556666777777778888888877777552   2332212222222344567777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCC--CC-CHHHHHHHHHHHHHcCCHhHHHHH
Q 014860          309 ARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE---KQR--PV-DFITYRTVLDEICRRGRAGEAMKL  382 (417)
Q Consensus       309 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~---~g~--~p-~~~~~~~li~~~~~~g~~~~A~~~  382 (417)
                      |.+.|.+..... .|+...+ .+..  ...|+..++ +.+..+.+   ...  .| ....|..+...+.+.|+.++|...
T Consensus       184 A~~~l~~~~~~~-~~~~~~~-~~~~--~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~  258 (296)
T PRK11189        184 AKENLKQRYEKL-DKEQWGW-NIVE--FYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAAL  258 (296)
T ss_pred             HHHHHHHHHhhC-CccccHH-HHHH--HHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            877776544322 2222111 2222  223444333 23333332   111  11 234677777777788888888888


Q ss_pred             HHHHHHCCCCChhhHHHHHHHHHh
Q 014860          383 LKELQNKNLIDGYTYTKLLDVLED  406 (417)
Q Consensus       383 ~~~m~~~~~p~~~t~~~ll~~~~~  406 (417)
                      |++....++++...+...+--+.+
T Consensus       259 ~~~Al~~~~~~~~e~~~~~~e~~~  282 (296)
T PRK11189        259 FKLALANNVYNFVEHRYALLELAL  282 (296)
T ss_pred             HHHHHHhCCchHHHHHHHHHHHHH
Confidence            888777776666666665444443

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.97  E-value=3e-06  Score=81.60  Aligned_cols=273  Identities=14%  Similarity=0.138  Sum_probs=180.8

Q ss_pred             HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh-
Q 014860          108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA-  186 (417)
Q Consensus       108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-  186 (417)
                      ..++...|++++|++.+..-.  ..+.............+.+.|+.++|..++..+++.++  .|..-|..+..+..-. 
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~--~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP--dn~~Yy~~L~~~~g~~~   86 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNE--KQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP--DNYDYYRGLEEALGLQL   86 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhh--hhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHhhhc
Confidence            345678899999999997653  22334455566677888999999999999999999874  4555555665655322 


Q ss_pred             ----CCHHHHHHHHHHhHhCCCCCCCC--------CHHHHHHHHHHHHh----cCCccchh---hh-----hHHHHHHHH
Q 014860          187 ----RKLSRAVYVFKYMKNSRNLECRP--------SIRSYNILFTAFLS----RGKNTYIN---HV-----YMETIRCLF  242 (417)
Q Consensus       187 ----g~~~~a~~~~~~m~~~~~~g~~p--------~~~~~~~li~~~~~----~g~~~~~~---~~-----~~~~a~~~~  242 (417)
                          ...+....+|+++.+.-.....|        +...|...+..|..    .|-++.-.   ..     -.+-..+++
T Consensus        87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~  166 (517)
T PF12569_consen   87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV  166 (517)
T ss_pred             ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence                25777888888886641000000        11233333333332    22111000   00     022333333


Q ss_pred             HHHH----HCC----------CCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC-HHHHHHHHHHHHhcCC
Q 014860          243 KQMV----NDG----------IEPDIF--SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN-SFSYDYLIHGLCAQGR  305 (417)
Q Consensus       243 ~~m~----~~g----------~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~  305 (417)
                      ....    ..+          -.|+..  ++.-+-..|-..|++++|++.++...+.   .|+ +..|..-...+-+.|+
T Consensus       167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~KarilKh~G~  243 (517)
T PF12569_consen  167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKARILKHAGD  243 (517)
T ss_pred             HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHHHHHHCCC
Confidence            3333    221          134443  4455567788999999999999988762   354 6778888889999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH------HH--HHHHHHHHHcCCHh
Q 014860          306 TKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFI------TY--RTVLDEICRRGRAG  377 (417)
Q Consensus       306 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------~~--~~li~~~~~~g~~~  377 (417)
                      +++|.+.++........ |...-+-.+..+.++|++++|.+++......+..|-..      .|  .....+|.+.|++.
T Consensus       244 ~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~  322 (517)
T PF12569_consen  244 LKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYG  322 (517)
T ss_pred             HHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            99999999999887544 77777778889999999999999999988876533222      12  33445788999999


Q ss_pred             HHHHHHHHHHH
Q 014860          378 EAMKLLKELQN  388 (417)
Q Consensus       378 ~A~~~~~~m~~  388 (417)
                      .|++.|..+.+
T Consensus       323 ~ALk~~~~v~k  333 (517)
T PF12569_consen  323 LALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHHH
Confidence            99988777654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.93  E-value=3.4e-07  Score=87.10  Aligned_cols=243  Identities=13%  Similarity=0.111  Sum_probs=175.0

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHhhcC----CCC-CCCHHHH-HHHHHHHHccCChhHHHHHHHHHHcC-----CCCCC
Q 014860          103 NNEELCNVMTLQEDPLVCLELFNWASKQ----PRF-RHDASTY-HIMTRKLGAAKMYQEMDDVVNQMLAT-----PSFCG  171 (417)
Q Consensus       103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~  171 (417)
                      +...+...|...|+++.|..++.+..+.    .|. .|...+. +.+...|...+++++|..+|+.+...     |...|
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            3445788889999999999999998653    221 2333332 23566788999999999999998874     22112


Q ss_pred             -CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCC--CCC-CCCHH-HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860          172 -TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRN--LEC-RPSIR-SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV  246 (417)
Q Consensus       172 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~g~-~p~~~-~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~  246 (417)
                       -..+++.|..+|.+.|++++|...+++..+...  .|. .|.+. .++.+...+...++        +++|..+++...
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~--------~Eea~~l~q~al  352 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE--------YEEAKKLLQKAL  352 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc--------hhHHHHHHHHHH
Confidence             245677788899999999988877776654310  121 23333 36677888888888        888888888665


Q ss_pred             HC---CCCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC----C--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860          247 ND---GIEP----DIFSLNSMIKGYILSNHVNDALRIFHQMGVVY----N--YLPNSFSYDYLIHGLCAQGRTKNARELC  313 (417)
Q Consensus       247 ~~---g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~--~~~~~~~~~~li~~~~~~g~~~~A~~l~  313 (417)
                      +.   -+.+    -..+++.|-..|...|++++|+++++......    |  ..-....++.|-..|.+.+++++|.++|
T Consensus       353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~  432 (508)
T KOG1840|consen  353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLF  432 (508)
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHH
Confidence            31   1122    24688999999999999999999999875422    1  1122456788888999999999999999


Q ss_pred             HHHH----HCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          314 DEMK----RKGF-VPS-SKSYNSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       314 ~~m~----~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      .+-.    ..|. .|+ ..+|..|...|...|++++|.++.+....
T Consensus       433 ~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  433 EEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            8754    3332 233 46789999999999999999999887763

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.91  E-value=3.5e-06  Score=70.11  Aligned_cols=209  Identities=10%  Similarity=-0.028  Sum_probs=146.5

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH
Q 014860          175 LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI  254 (417)
Q Consensus       175 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~  254 (417)
                      +...|.-.|.+.|+...|.+-+++..+..    +-+..+|..+...|.+.|+        .+.|.+-|+...+.. +-+.
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~D----Ps~~~a~~~~A~~Yq~~Ge--------~~~A~e~YrkAlsl~-p~~G  103 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHD----PSYYLAHLVRAHYYQKLGE--------NDLADESYRKALSLA-PNNG  103 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC----cccHHHHHHHHHHHHHcCC--------hhhHHHHHHHHHhcC-CCcc
Confidence            34456667778888888888888887752    3346677788888888888        788888888777654 3455


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860          255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSA  334 (417)
Q Consensus       255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~  334 (417)
                      .+.|..-.-+|..|++++|...|+.........--..+|..+.-+..+.|+.+.|.+.|++-.+.... ...+.-.+...
T Consensus       104 dVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~  182 (250)
T COG3063         104 DVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARL  182 (250)
T ss_pred             chhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHH
Confidence            67777777778888888888888877664444445567777777777788888888888877765322 34566677777


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHH
Q 014860          335 LALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTK  399 (417)
Q Consensus       335 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~  399 (417)
                      ..+.|++-.|..+++.....+. ++.......|+.--+.|+.+.+.+.=..+ .+.+|....|-.
T Consensus       183 ~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL-~r~fP~s~e~q~  245 (250)
T COG3063         183 HYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL-QRLFPYSEEYQT  245 (250)
T ss_pred             HHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH-HHhCCCcHHHHh
Confidence            7788888888888877776654 77777777777777778877666554333 344665555443

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.90  E-value=2.5e-07  Score=80.42  Aligned_cols=230  Identities=9%  Similarity=0.020  Sum_probs=191.3

Q ss_pred             HHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 014860          105 EELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFA  184 (417)
Q Consensus       105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~  184 (417)
                      +.+...|.+-|-+.+|.+.|+...++   .|.+.||..+-++|-+..+.+.|+.++.+-.+.-+  -|+....-+.+.+-
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q---~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP--~~VT~l~g~ARi~e  301 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ---FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFP--FDVTYLLGQARIHE  301 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc---CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCC--chhhhhhhhHHHHH
Confidence            45677788999999999999988765   48899999999999999999999999999877643  35445556778889


Q ss_pred             HhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860          185 EARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGY  264 (417)
Q Consensus       185 ~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  264 (417)
                      ..++.++|.++|++..+.    .+.++.....+..+|.-.++        .|.|+..|+++.+.|+ -+...|+.+--+|
T Consensus       302 am~~~~~a~~lYk~vlk~----~~~nvEaiAcia~~yfY~~~--------PE~AlryYRRiLqmG~-~speLf~NigLCC  368 (478)
T KOG1129|consen  302 AMEQQEDALQLYKLVLKL----HPINVEAIACIAVGYFYDNN--------PEMALRYYRRILQMGA-QSPELFCNIGLCC  368 (478)
T ss_pred             HHHhHHHHHHHHHHHHhc----CCccceeeeeeeeccccCCC--------hHHHHHHHHHHHHhcC-CChHHHhhHHHHH
Confidence            999999999999999886    24466777778888888888        9999999999999996 4777888888889


Q ss_pred             HhcCCHHHHHHHHHHhhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          265 ILSNHVNDALRIFHQMGVVYNYLPN--SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE  342 (417)
Q Consensus       265 ~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  342 (417)
                      .-.+++|.++--|.+... .-..|+  ...|-.+-......|++..|.+-|+-....+-. +...+|.|.-.-.+.|+++
T Consensus       369 ~yaqQ~D~~L~sf~RAls-tat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~  446 (478)
T KOG1129|consen  369 LYAQQIDLVLPSFQRALS-TATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDIL  446 (478)
T ss_pred             HhhcchhhhHHHHHHHHh-hccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchH
Confidence            999999999998888765 222333  456888888888899999999999988876433 6788999988889999999


Q ss_pred             HHHHHHHHHHHc
Q 014860          343 ETVKNLWEMIEK  354 (417)
Q Consensus       343 ~A~~~~~~m~~~  354 (417)
                      +|..+++.....
T Consensus       447 ~Arsll~~A~s~  458 (478)
T KOG1129|consen  447 GARSLLNAAKSV  458 (478)
T ss_pred             HHHHHHHHhhhh
Confidence            999999987764

>PF12854 PPR_1: PPR repeat

Probab=98.88  E-value=2.8e-09  Score=61.62  Aligned_cols=32  Identities=38%  Similarity=0.730  Sum_probs=16.8

Q ss_pred             CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860          355 QRPVDFITYRTVLDEICRRGRAGEAMKLLKEL  386 (417)
Q Consensus       355 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  386 (417)
                      |+.||..||++||.+||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            44555555555555555555555555555554

>PF12854 PPR_1: PPR repeat

Probab=98.87  E-value=3.5e-09  Score=61.25  Aligned_cols=32  Identities=31%  Similarity=0.526  Sum_probs=18.9

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860          320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEM  351 (417)
Q Consensus       320 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  351 (417)
                      |+.||..|||+||.+||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45555555666666666666666665555555

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.86  E-value=1.4e-06  Score=86.02  Aligned_cols=276  Identities=14%  Similarity=0.102  Sum_probs=204.0

Q ss_pred             HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 014860          107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA  186 (417)
Q Consensus       107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  186 (417)
                      +...+-..++.+.|-+.|..+.+..  +-=+..|-.+....-..+...+|...+........  .++..+..+...+.+.
T Consensus       502 larl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~--~np~arsl~G~~~l~k  577 (1018)
T KOG2002|consen  502 LARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDS--SNPNARSLLGNLHLKK  577 (1018)
T ss_pred             HHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc--CCcHHHHHHHHHHHhh
Confidence            3444456678999999999997654  22344455555444456888999999999988776  5666777777899999


Q ss_pred             CCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc----CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          187 RKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR----GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK  262 (417)
Q Consensus       187 g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~----g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  262 (417)
                      ..+..|.+-|+.+.+..  ...+|+.+.-.|-+.|.+.    .+.+..++...++|+++|.+..+.. +-|...-|-+--
T Consensus       578 ~~~~~a~k~f~~i~~~~--~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgi  654 (1018)
T KOG2002|consen  578 SEWKPAKKKFETILKKT--STKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGI  654 (1018)
T ss_pred             hhhcccccHHHHHHhhh--ccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhh
Confidence            99999999888777652  2235666655555544433    2233345566999999999998775 457777777888


Q ss_pred             HHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCH
Q 014860          263 GYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK-GFVPSSKSYNSLVSALALNGEV  341 (417)
Q Consensus       263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~  341 (417)
                      .++..|+++.|..||.+..+. . .-+..+|-.+.++|...|++..|+++|+...+. .-.-+....+.|.+++.+.|.+
T Consensus       655 VLA~kg~~~~A~dIFsqVrEa-~-~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~  732 (1018)
T KOG2002|consen  655 VLAEKGRFSEARDIFSQVREA-T-SDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKL  732 (1018)
T ss_pred             hhhhccCchHHHHHHHHHHHH-H-hhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhH
Confidence            888999999999999999883 2 235568999999999999999999999976654 4455788899999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHH------------------HHcCCHhHHHHHHHHHHHCCC
Q 014860          342 EETVKNLWEMIEKQRPVDFITYRTVLDEI------------------CRRGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       342 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~------------------~~~g~~~~A~~~~~~m~~~~~  391 (417)
                      .+|.+.+.........-...-||..+...                  ...+..+.|.++|.+|...+-
T Consensus       733 ~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d  800 (1018)
T KOG2002|consen  733 QEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGD  800 (1018)
T ss_pred             HHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            99999888877653333334455443321                  123567889999999988765

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.85  E-value=1.8e-05  Score=74.02  Aligned_cols=262  Identities=11%  Similarity=0.027  Sum_probs=133.5

Q ss_pred             HHhccCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH---
Q 014860          110 VMTLQEDPLVCLELFNWASKQPRFRHDA-STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE---  185 (417)
Q Consensus       110 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~---  185 (417)
                      .+...++++.+...+....+...-.++. +........+...|++++|.+.++...+..+  .+...+.. ...+..   
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~-~~~~~~~~~   91 (355)
T cd05804          15 LLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYP--RDLLALKL-HLGAFGLGD   91 (355)
T ss_pred             HHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC--CcHHHHHH-hHHHHHhcc
Confidence            3344455666555555543332222232 2222223345567777888777777766543  33333332 212222   


Q ss_pred             -hCCHHHHHHHHHHhHhCCCCCCCCC-HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860          186 -ARKLSRAVYVFKYMKNSRNLECRPS-IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG  263 (417)
Q Consensus       186 -~g~~~~a~~~~~~m~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  263 (417)
                       .+..+.+.+.++...     ...|+ ......+...+...|+        +++|.+.+++..+.. +.+...+..+-..
T Consensus        92 ~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~a~~~~~~G~--------~~~A~~~~~~al~~~-p~~~~~~~~la~i  157 (355)
T cd05804          92 FSGMRDHVARVLPLWA-----PENPDYWYLLGMLAFGLEEAGQ--------YDRAEEAARRALELN-PDDAWAVHAVAHV  157 (355)
T ss_pred             cccCchhHHHHHhccC-----cCCCCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence             344444444444311     12333 3344455566777777        778888887777664 3345566677777


Q ss_pred             HHhcCCHHHHHHHHHHhhhhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHH-H--HHHHHHHh
Q 014860          264 YILSNHVNDALRIFHQMGVVYNYLPNS--FSYDYLIHGLCAQGRTKNARELCDEMKRKGF-VPSSKSY-N--SLVSALAL  337 (417)
Q Consensus       264 ~~~~g~~~~a~~~~~~m~~~~~~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~-~--~li~~~~~  337 (417)
                      +...|++++|...+++........++.  ..|..+...+...|++++|..++++...... .+..... +  .++.-+..
T Consensus       158 ~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  237 (355)
T cd05804         158 LEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLEL  237 (355)
T ss_pred             HHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHh
Confidence            777788888887777765522112222  2344566677777888888888877653322 1112111 1  22333333


Q ss_pred             cCCHHHHHHH--HHHHHHcCC--CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          338 NGEVEETVKN--LWEMIEKQR--PVDFITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       338 ~g~~~~A~~~--~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      .|..+.+.++  +........  ............++...|+.++|..+++.+..
T Consensus       238 ~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~  292 (355)
T cd05804         238 AGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKG  292 (355)
T ss_pred             cCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence            3432222222  111111100  11112222455566677777778877777765

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.82  E-value=5.3e-06  Score=75.36  Aligned_cols=209  Identities=12%  Similarity=0.056  Sum_probs=165.9

Q ss_pred             HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860          147 LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK  226 (417)
Q Consensus       147 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~  226 (417)
                      ...+|++++|.+.+.+.+..+.. -....||. .-.+-..|++++|+..|-.+-..    +.-+..+.-.+...|-...+
T Consensus       500 ~f~ngd~dka~~~ykeal~ndas-c~ealfni-glt~e~~~~ldeald~f~klh~i----l~nn~evl~qianiye~led  573 (840)
T KOG2003|consen  500 AFANGDLDKAAEFYKEALNNDAS-CTEALFNI-GLTAEALGNLDEALDCFLKLHAI----LLNNAEVLVQIANIYELLED  573 (840)
T ss_pred             eeecCcHHHHHHHHHHHHcCchH-HHHHHHHh-cccHHHhcCHHHHHHHHHHHHHH----HHhhHHHHHHHHHHHHHhhC
Confidence            34689999999999999886542 22333443 33466789999999999887653    34467777778888888888


Q ss_pred             ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 014860          227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRT  306 (417)
Q Consensus       227 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~  306 (417)
                              ...|++++-+.... ++.|+.+..-|-+.|-+.|+-..|.+.+-+--.  =++-+..|...|...|....-+
T Consensus       574 --------~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~  642 (840)
T KOG2003|consen  574 --------PAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFS  642 (840)
T ss_pred             --------HHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHH
Confidence                    88899888766543 466788899999999999999999988765533  3456788888888899999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860          307 KNARELCDEMKRKGFVPSSKSYNSLVSAL-ALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR  375 (417)
Q Consensus       307 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  375 (417)
                      +++...|++.--  +.|+..-|..+|..| .+.|++.+|+++++....+ ++-|......|++.+...|.
T Consensus       643 ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  643 EKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             HHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            999999998654  689999999988665 4689999999999998875 77888888999998887775

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.82  E-value=5e-07  Score=80.97  Aligned_cols=250  Identities=16%  Similarity=0.111  Sum_probs=165.8

Q ss_pred             HhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHH
Q 014860          111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLS  190 (417)
Q Consensus       111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~  190 (417)
                      .--.|++..|+.-.+ .. ...-..+......+.+++...|+.+.   +..++.... . |.......+...+...++-+
T Consensus        11 ~fy~G~Y~~~i~e~~-~~-~~~~~~~~e~~~~~~Rs~iAlg~~~~---vl~ei~~~~-~-~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen   11 QFYLGNYQQCINEAS-LK-SFSPENKLERDFYQYRSYIALGQYDS---VLSEIKKSS-S-PELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHCTT-HHHHCHHHH-CH-TSTCHHHHHHHHHHHHHHHHTT-HHH---HHHHS-TTS-S-CCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHhhhHHHHHHHhh-cc-CCCchhHHHHHHHHHHHHHHcCChhH---HHHHhccCC-C-hhHHHHHHHHHHHhCccchH
Confidence            345788888887665 32 22112345566677888889998775   445554444 2 66666666655554445566


Q ss_pred             HHHHHHHHhHhCCCCCCCCCHHHHHH-HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860          191 RAVYVFKYMKNSRNLECRPSIRSYNI-LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH  269 (417)
Q Consensus       191 ~a~~~~~~m~~~~~~g~~p~~~~~~~-li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  269 (417)
                      .++.-+++....   +...+..++.. ....+...|+        +++|++++..-      .+.......+..|.+.++
T Consensus        84 ~~l~~l~~~~~~---~~~~~~~~~~~~~A~i~~~~~~--------~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R  146 (290)
T PF04733_consen   84 SALEELKELLAD---QAGESNEIVQLLAATILFHEGD--------YEEALKLLHKG------GSLELLALAVQILLKMNR  146 (290)
T ss_dssp             CHHHHHHHCCCT---S---CHHHHHHHHHHHHCCCCH--------HHHHHCCCTTT------TCHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHHh---ccccccHHHHHHHHHHHHHcCC--------HHHHHHHHHcc------CcccHHHHHHHHHHHcCC
Confidence            666666555443   22222223322 2234455677        99999888642      456777888999999999


Q ss_pred             HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860          270 VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETV  345 (417)
Q Consensus       270 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  345 (417)
                      ++.|.+.++.|.+ .  ..| .+...+..+|..    .+++.+|..+|+++.+. ..++..+.|.+..++...|++++|.
T Consensus       147 ~dlA~k~l~~~~~-~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe  221 (290)
T PF04733_consen  147 PDLAEKELKNMQQ-I--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAE  221 (290)
T ss_dssp             HHHHHHHHHHHHC-C--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHH
T ss_pred             HHHHHHHHHHHHh-c--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            9999999999986 2  234 344445555543    34699999999998765 6678999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHHCC
Q 014860          346 KNLWEMIEKQRPVDFITYRTVLDEICRRGRA-GEAMKLLKELQNKN  390 (417)
Q Consensus       346 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~  390 (417)
                      +++.+..+.. +-+..+...+|......|+. +.+.+++.++....
T Consensus       222 ~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~  266 (290)
T PF04733_consen  222 ELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN  266 (290)
T ss_dssp             HHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred             HHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence            9999987652 34566777788888888887 66788999988765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.81  E-value=1.6e-05  Score=74.30  Aligned_cols=271  Identities=12%  Similarity=0.033  Sum_probs=206.4

Q ss_pred             HHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH
Q 014860          110 VMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL  189 (417)
Q Consensus       110 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~  189 (417)
                      -+-..+++.+++++++.+.+..+  ++...+..-|..+...|+..+-..+=.++.+..+  ....+|-++.-.|.-.|+.
T Consensus       253 ~~y~~c~f~~c~kit~~lle~dp--fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP--~~a~sW~aVg~YYl~i~k~  328 (611)
T KOG1173|consen  253 RLYYGCRFKECLKITEELLEKDP--FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYP--SKALSWFAVGCYYLMIGKY  328 (611)
T ss_pred             HHHHcChHHHHHHHhHHHHhhCC--CCcchHHHHHHHHHHhcccchHHHHHHHHHHhCC--CCCcchhhHHHHHHHhcCc
Confidence            34567889999999999987774  5556666666788899988888888788877764  5678899999999999999


Q ss_pred             HHHHHHHHHhHhCCCCCCCCC-HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC--CC-CCCHHHHHHHHHHHH
Q 014860          190 SRAVYVFKYMKNSRNLECRPS-IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND--GI-EPDIFSLNSMIKGYI  265 (417)
Q Consensus       190 ~~a~~~~~~m~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~--g~-~p~~~~~~~li~~~~  265 (417)
                      ++|.+.|......     .|. ...|-..-..|+-.|.        .|+|+..+...-+.  |. .|..    -+---|.
T Consensus       329 seARry~SKat~l-----D~~fgpaWl~fghsfa~e~E--------hdQAmaaY~tAarl~~G~hlP~L----Ylgmey~  391 (611)
T KOG1173|consen  329 SEARRYFSKATTL-----DPTFGPAWLAFGHSFAGEGE--------HDQAMAAYFTAARLMPGCHLPSL----YLGMEYM  391 (611)
T ss_pred             HHHHHHHHHHhhc-----CccccHHHHHHhHHhhhcch--------HHHHHHHHHHHHHhccCCcchHH----HHHHHHH
Confidence            9999999988764     333 5678899999999998        99999888766542  21 2322    2233477


Q ss_pred             hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CC-CCHHHHHHHHHHHHhcC
Q 014860          266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK----G-FV-PSSKSYNSLVSALALNG  339 (417)
Q Consensus       266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~-p~~~~~~~li~~~~~~g  339 (417)
                      +.+..+.|.++|.+...  -.+-|....+-+--.....+.+.+|..+|......    + -+ --..+++.|-.+|.+.+
T Consensus       392 ~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~  469 (611)
T KOG1173|consen  392 RTNNLKLAEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLN  469 (611)
T ss_pred             HhccHHHHHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHh
Confidence            88999999999998854  33446666777666667788899999999876622    1 11 13457888999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860          340 EVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLE  405 (417)
Q Consensus       340 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~  405 (417)
                      ..++|+..+++.... .+.|..++.++.-.|...|+++.|...|++-.-.. |+..+-..++..+.
T Consensus       470 ~~~eAI~~~q~aL~l-~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~-p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  470 KYEEAIDYYQKALLL-SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK-PDNIFISELLKLAI  533 (611)
T ss_pred             hHHHHHHHHHHHHHc-CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC-CccHHHHHHHHHHH
Confidence            999999999998876 46688899999999999999999999999877654 44444455554443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.77  E-value=2.9e-05  Score=72.63  Aligned_cols=264  Identities=12%  Similarity=0.024  Sum_probs=166.4

Q ss_pred             HhccCChhHHHHHHHHhhcCCCCCCCHHHHHH---HHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860          111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHI---MTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR  187 (417)
Q Consensus       111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g  187 (417)
                      +...|+++.|.++++...+..  +.|...+..   ........+..+.+.+.+..  ..+..+........+...+...|
T Consensus        53 ~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G  128 (355)
T cd05804          53 AWIAGDLPKALALLEQLLDDY--PRDLLALKLHLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAG  128 (355)
T ss_pred             HHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHhHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcC
Confidence            367899999999999886553  345545442   11122234566666666654  22222133455556777889999


Q ss_pred             CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHH
Q 014860          188 KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI-EPDI--FSLNSMIKGY  264 (417)
Q Consensus       188 ~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~li~~~  264 (417)
                      ++++|.+.+++..+.    -+.+...+..+...+...|+        +++|...+++..+... .++.  ..|..+...+
T Consensus       129 ~~~~A~~~~~~al~~----~p~~~~~~~~la~i~~~~g~--------~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~  196 (355)
T cd05804         129 QYDRAEEAARRALEL----NPDDAWAVHAVAHVLEMQGR--------FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY  196 (355)
T ss_pred             CHHHHHHHHHHHHhh----CCCCcHHHHHHHHHHHHcCC--------HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence            999999999999986    24456778889999999999        9999999998886532 2332  3455678889


Q ss_pred             HhcCCHHHHHHHHHHhhhhCCCCCCHHHH-H--HHHHHHHhcCCHHHHHHH--HHHHHHCCC--CCCHHHHHHHHHHHHh
Q 014860          265 ILSNHVNDALRIFHQMGVVYNYLPNSFSY-D--YLIHGLCAQGRTKNAREL--CDEMKRKGF--VPSSKSYNSLVSALAL  337 (417)
Q Consensus       265 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-~--~li~~~~~~g~~~~A~~l--~~~m~~~g~--~p~~~~~~~li~~~~~  337 (417)
                      ...|++++|.+++++........+..... +  .++.-+...|....+.++  +........  ............++..
T Consensus       197 ~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  276 (355)
T cd05804         197 LERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAG  276 (355)
T ss_pred             HHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence            99999999999999985422212222222 2  333334444544333333  221111111  1111222356777888


Q ss_pred             cCCHHHHHHHHHHHHHcCCC---CCH---HHHHHHHH--HHHHcCCHhHHHHHHHHHHHCC
Q 014860          338 NGEVEETVKNLWEMIEKQRP---VDF---ITYRTVLD--EICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       338 ~g~~~~A~~~~~~m~~~g~~---p~~---~~~~~li~--~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      .|+.++|...++.+......   -..   .+-..++.  ++...|+.++|.+++.+.....
T Consensus       277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a  337 (355)
T cd05804         277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL  337 (355)
T ss_pred             CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            99999999999998775222   011   11122233  4568999999999998877653

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.77  E-value=0.00011  Score=70.02  Aligned_cols=116  Identities=10%  Similarity=0.029  Sum_probs=63.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--------------
Q 014860          289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK--------------  354 (417)
Q Consensus       289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--------------  354 (417)
                      .+-.|-.|...=-+.|.+-.|..++++-.-++.+ |...|-..|++-.+.|+.+.|..++.+..+.              
T Consensus       718 ~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~l  796 (913)
T KOG0495|consen  718 SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWL  796 (913)
T ss_pred             CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHh
Confidence            3344444544445555566666666665555433 5556666666666666666665555544331              


Q ss_pred             ---------------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860          355 ---------------QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLE  405 (417)
Q Consensus       355 ---------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~  405 (417)
                                     .+.-|++..-++...+-....+++|.+.|.+..+.+.-...+|.-+..-..
T Consensus       797 e~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel  862 (913)
T KOG0495|consen  797 EPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFEL  862 (913)
T ss_pred             ccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHH
Confidence                           122344445555555666666777777777776665434444444444333

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.75  E-value=4.4e-06  Score=82.65  Aligned_cols=282  Identities=13%  Similarity=0.114  Sum_probs=197.5

Q ss_pred             CCHHHHHHHHhccCChhHHHHHHHHhhcCC--CCCCCHH------HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCH
Q 014860          102 FNNEELCNVMTLQEDPLVCLELFNWASKQP--RFRHDAS------TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTE  173 (417)
Q Consensus       102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~--~~~~~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  173 (417)
                      ...|.+....-..|++..|...|.......  ...+|..      +--.+...+-..++++.|.+.+..+.+..+.  =+
T Consensus       453 E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~--YI  530 (1018)
T KOG2002|consen  453 EVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG--YI  530 (1018)
T ss_pred             HHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch--hH
Confidence            344555555667888888988888875431  1123331      1222344555677889999999988886531  12


Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC-CCCC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND-GIEP  252 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~-g~~p  252 (417)
                      ..|--+..+....+...+|...+.+....    ...+...|..+-..+....+        +..|.+-|....+. ...+
T Consensus       531 d~ylRl~~ma~~k~~~~ea~~~lk~~l~~----d~~np~arsl~G~~~l~k~~--------~~~a~k~f~~i~~~~~~~~  598 (1018)
T KOG2002|consen  531 DAYLRLGCMARDKNNLYEASLLLKDALNI----DSSNPNARSLLGNLHLKKSE--------WKPAKKKFETILKKTSTKT  598 (1018)
T ss_pred             HHHHHhhHHHHhccCcHHHHHHHHHHHhc----ccCCcHHHHHHHHHHHhhhh--------hcccccHHHHHHhhhccCC
Confidence            23333332333346677888888888774    34556667677778888777        77888766665543 2235


Q ss_pred             CHHHHHHHHHHHHh------------cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014860          253 DIFSLNSMIKGYIL------------SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG  320 (417)
Q Consensus       253 ~~~~~~~li~~~~~------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  320 (417)
                      |.++.-+|-+.|..            .+..++|+++|.+..+  .-+.|...-|-+--.++..|++.+|.++|....+..
T Consensus       599 D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~  676 (1018)
T KOG2002|consen  599 DAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREAT  676 (1018)
T ss_pred             chhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhhhhhhccCchHHHHHHHHHHHHH
Confidence            76666666665542            2456788899888865  234577777888888999999999999999999875


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC-ChhhHH
Q 014860          321 FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI-DGYTYT  398 (417)
Q Consensus       321 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p-~~~t~~  398 (417)
                      . -+..+|-.+..+|..+|++..|+++|+...+. .-.-+....+.|.+++-+.|.+.+|.+.+.......+- +..-||
T Consensus       677 ~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN  755 (1018)
T KOG2002|consen  677 S-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFN  755 (1018)
T ss_pred             h-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence            4 25567999999999999999999999987766 54557778899999999999999999998887776552 444454


Q ss_pred             HH
Q 014860          399 KL  400 (417)
Q Consensus       399 ~l  400 (417)
                      ..
T Consensus       756 ~a  757 (1018)
T KOG2002|consen  756 LA  757 (1018)
T ss_pred             HH
Confidence            43

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.74  E-value=7.2e-06  Score=75.30  Aligned_cols=221  Identities=14%  Similarity=0.070  Sum_probs=129.7

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA  192 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a  192 (417)
                      ..|++..|.+-|+......  +.+...|-.+..+|....+.++.++.|+...+.+.  -|..+|..-..++.-.+++++|
T Consensus       338 L~g~~~~a~~d~~~~I~l~--~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp--~n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  338 LKGDSLGAQEDFDAAIKLD--PAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDP--ENPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hcCCchhhhhhHHHHHhcC--cccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCC--CCCchhHhHHHHHHHHHHHHHH
Confidence            3466666666666665433  22233366666667777777777777777776665  3445565666666666677777


Q ss_pred             HHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          193 VYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN  271 (417)
Q Consensus       193 ~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  271 (417)
                      ..=|++..+-     .| ++..|--+--+.-+.++        +++++..|++.++. ++--+.+|+..-..+...++++
T Consensus       414 ~aDF~Kai~L-----~pe~~~~~iQl~~a~Yr~~k--------~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd  479 (606)
T KOG0547|consen  414 IADFQKAISL-----DPENAYAYIQLCCALYRQHK--------IAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFD  479 (606)
T ss_pred             HHHHHHHhhc-----ChhhhHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHH
Confidence            7777777654     23 34444444445555566        77777777776654 2344566777777777777777


Q ss_pred             HHHHHHHHhhhhCC----CCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860          272 DALRIFHQMGVVYN----YLPNS--FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETV  345 (417)
Q Consensus       272 ~a~~~~~~m~~~~~----~~~~~--~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  345 (417)
                      +|.+.|+...+...    +-.+.  ..--+++-.- -.+++..|+.+++...+...+ ....|..|...-.+.|++++|+
T Consensus       480 ~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAi  557 (606)
T KOG0547|consen  480 KAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAI  557 (606)
T ss_pred             HHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHH
Confidence            77777776654211    11111  1111222111 226667777777766654322 3456677777777777777777


Q ss_pred             HHHHHHHH
Q 014860          346 KNLWEMIE  353 (417)
Q Consensus       346 ~~~~~m~~  353 (417)
                      ++|++-..
T Consensus       558 elFEksa~  565 (606)
T KOG0547|consen  558 ELFEKSAQ  565 (606)
T ss_pred             HHHHHHHH
Confidence            77776543

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=1.9e-05  Score=73.92  Aligned_cols=259  Identities=10%  Similarity=0.007  Sum_probs=196.7

Q ss_pred             HHHhcCCCCCC-HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCC
Q 014860           93 CAVSELPPRFN-NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG  171 (417)
Q Consensus        93 ~~l~~~p~~~~-~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  171 (417)
                      ..+...|-... +..-|..+...|+..+-..+=..+....  +..+.+|-.+.-.|.-.|+..+|++.|......+.  .
T Consensus       269 ~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y--P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~--~  344 (611)
T KOG1173|consen  269 ELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY--PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDP--T  344 (611)
T ss_pred             HHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC--CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCc--c
Confidence            34444444433 3344666777788777777777776544  67788899988888888999999999999877654  3


Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860          172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE  251 (417)
Q Consensus       172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~  251 (417)
                      =...|-...+.|+-.|.-|+|+..|...-+-    .+-....+--+-.-|.+.+.        .+.|.+.|.+..... +
T Consensus       345 fgpaWl~fghsfa~e~EhdQAmaaY~tAarl----~~G~hlP~LYlgmey~~t~n--------~kLAe~Ff~~A~ai~-P  411 (611)
T KOG1173|consen  345 FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL----MPGCHLPSLYLGMEYMRTNN--------LKLAEKFFKQALAIA-P  411 (611)
T ss_pred             ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh----ccCCcchHHHHHHHHHHhcc--------HHHHHHHHHHHHhcC-C
Confidence            4578999999999999999999988877653    11122223344556788888        999999999888654 5


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-C----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014860          252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYN-Y----LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK  326 (417)
Q Consensus       252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  326 (417)
                      -|+.+.+-+--.....+.+.+|...|+.....-. +    ..-..+++.|-.+|.+.+++++|+..++...... +-|..
T Consensus       412 ~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~  490 (611)
T KOG1173|consen  412 SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDAS  490 (611)
T ss_pred             CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchh
Confidence            5777888877777778899999999987752110 1    1234568889999999999999999999988774 44899


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860          327 SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC  371 (417)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  371 (417)
                      ++.++.-.|...|+++.|.+.|.+...  +.||..+-..++..+.
T Consensus       491 ~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  491 THASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence            999999999999999999999998775  5788877777776443

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.71  E-value=8.7e-07  Score=79.43  Aligned_cols=221  Identities=13%  Similarity=0.098  Sum_probs=149.1

Q ss_pred             HHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 014860          106 ELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE  185 (417)
Q Consensus       106 ~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~  185 (417)
                      .+.+++...|+.+.++.-.   ....  .|.......+...+...++-+.+..-+...........+....-.....+..
T Consensus        40 ~~~Rs~iAlg~~~~vl~ei---~~~~--~~~l~av~~la~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~  114 (290)
T PF04733_consen   40 YQYRSYIALGQYDSVLSEI---KKSS--SPELQAVRLLAEYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFH  114 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHS----TTS--SCCCHHHHHHHHHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCChhHHHHHh---ccCC--ChhHHHHHHHHHHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            3566667777777655433   2222  6777777666655554455555555555444443321233333334456677


Q ss_pred             hCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014860          186 ARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYI  265 (417)
Q Consensus       186 ~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  265 (417)
                      .|++++|++++..-         .+.......+..+.+.++        .+.|.+.++.|.+.+  .| .+...+..++.
T Consensus       115 ~~~~~~AL~~l~~~---------~~lE~~al~Vqi~L~~~R--------~dlA~k~l~~~~~~~--eD-~~l~qLa~awv  174 (290)
T PF04733_consen  115 EGDYEEALKLLHKG---------GSLELLALAVQILLKMNR--------PDLAEKELKNMQQID--ED-SILTQLAEAWV  174 (290)
T ss_dssp             CCHHHHHHCCCTTT---------TCHHHHHHHHHHHHHTT---------HHHHHHHHHHHHCCS--CC-HHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHcc---------CcccHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC--Cc-HHHHHHHHHHH
Confidence            89999999988654         256777888999999999        999999999998753  33 34444555554


Q ss_pred             h----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860          266 L----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV  341 (417)
Q Consensus       266 ~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~  341 (417)
                      .    .+.+.+|..+|+++.+  ...++..+.+.+..+....|++++|.+++.+..+.+.. |..+...++.+....|+.
T Consensus       175 ~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~  251 (290)
T PF04733_consen  175 NLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKP  251 (290)
T ss_dssp             HHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-T
T ss_pred             HHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCC
Confidence            3    3468999999999976  45578888999999999999999999999998765433 667777888888888887


Q ss_pred             -HHHHHHHHHHHHc
Q 014860          342 -EETVKNLWEMIEK  354 (417)
Q Consensus       342 -~~A~~~~~~m~~~  354 (417)
                       +.+.+++.++...
T Consensus       252 ~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  252 TEAAERYLSQLKQS  265 (290)
T ss_dssp             CHHHHHHHHHCHHH
T ss_pred             hhHHHHHHHHHHHh
Confidence             6778888888765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.70  E-value=2.5e-05  Score=65.17  Aligned_cols=191  Identities=10%  Similarity=-0.047  Sum_probs=101.0

Q ss_pred             HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 014860          109 NVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK  188 (417)
Q Consensus       109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~  188 (417)
                      -.|...|+...|..-++++.+..  +-+..++..+...|-+.|..+.|.+-|+...+..+  .+..+.|.....+|..|+
T Consensus        43 l~YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p--~~GdVLNNYG~FLC~qg~  118 (250)
T COG3063          43 LGYLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP--NNGDVLNNYGAFLCAQGR  118 (250)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--CccchhhhhhHHHHhCCC
Confidence            34455666666666666655443  34455555555556666666666666666655543  344555555555666666


Q ss_pred             HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860          189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN  268 (417)
Q Consensus       189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  268 (417)
                      +++|...|++....+..|.  -..+|..+.-+..+.|+        .+.|.+.|++..+.. +-...+.-.+.....+.|
T Consensus       119 ~~eA~q~F~~Al~~P~Y~~--~s~t~eN~G~Cal~~gq--------~~~A~~~l~raL~~d-p~~~~~~l~~a~~~~~~~  187 (250)
T COG3063         119 PEEAMQQFERALADPAYGE--PSDTLENLGLCALKAGQ--------FDQAEEYLKRALELD-PQFPPALLELARLHYKAG  187 (250)
T ss_pred             hHHHHHHHHHHHhCCCCCC--cchhhhhhHHHHhhcCC--------chhHHHHHHHHHHhC-cCCChHHHHHHHHHHhcc
Confidence            6666666666655532222  23445555555555666        566666666555443 122334444555555555


Q ss_pred             CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860          269 HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEM  316 (417)
Q Consensus       269 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  316 (417)
                      ++..|...++....  +..++....-..|..-.+.|+.+.+-+.=..+
T Consensus       188 ~y~~Ar~~~~~~~~--~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL  233 (250)
T COG3063         188 DYAPARLYLERYQQ--RGGAQAESLLLGIRIAKRLGDRAAAQRYQAQL  233 (250)
T ss_pred             cchHHHHHHHHHHh--cccccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            55555555555544  12245544444455555555555444443333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.69  E-value=0.00015  Score=69.32  Aligned_cols=266  Identities=11%  Similarity=-0.007  Sum_probs=207.8

Q ss_pred             CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860          102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIY  181 (417)
Q Consensus       102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  181 (417)
                      .+|..-.+.|.+.+.++.|..+|..+.+.  ++-+...|......=-..|..++...+++.....-.  .....|-....
T Consensus       517 ~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~p--kae~lwlM~ak  592 (913)
T KOG0495|consen  517 STWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCP--KAEILWLMYAK  592 (913)
T ss_pred             hHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC--cchhHHHHHHH
Confidence            46677777777888888888888887644  356677777777776778888999999998887654  45566777777


Q ss_pred             HHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860          182 FFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMI  261 (417)
Q Consensus       182 ~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li  261 (417)
                      -+-.+|++..|..++...-+.    .+-+...|-+-+..-..+..        ++.|..+|.+....  .|+..+|.--+
T Consensus       593 e~w~agdv~~ar~il~~af~~----~pnseeiwlaavKle~en~e--------~eraR~llakar~~--sgTeRv~mKs~  658 (913)
T KOG0495|consen  593 EKWKAGDVPAARVILDQAFEA----NPNSEEIWLAAVKLEFENDE--------LERARDLLAKARSI--SGTERVWMKSA  658 (913)
T ss_pred             HHHhcCCcHHHHHHHHHHHHh----CCCcHHHHHHHHHHhhcccc--------HHHHHHHHHHHhcc--CCcchhhHHHh
Confidence            788889999999999998875    23367788888998888888        99999999988765  57788887777


Q ss_pred             HHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860          262 KGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV  341 (417)
Q Consensus       262 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~  341 (417)
                      ..-.-.+..++|.+++++..+.  ++.-...|..+-..+-+.++.+.|.+.|..=.+. ++-....|-.|.+.--+.|.+
T Consensus       659 ~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~  735 (913)
T KOG0495|consen  659 NLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQL  735 (913)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcch
Confidence            7677788999999999888763  3334556777777788888888888877654433 333566788888888889999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860          342 EETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       342 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  389 (417)
                      -+|..+++...-+ -+-|...|-..|+.=.+.|+.+.|..+..+..+.
T Consensus       736 ~rAR~ildrarlk-NPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQe  782 (913)
T KOG0495|consen  736 VRARSILDRARLK-NPKNALLWLESIRMELRAGNKEQAELLMAKALQE  782 (913)
T ss_pred             hhHHHHHHHHHhc-CCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            9999999988776 3557788999999999999999999888777665

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.66  E-value=2.4e-05  Score=80.20  Aligned_cols=234  Identities=13%  Similarity=0.124  Sum_probs=172.7

Q ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-----CHHHHHHHHHHHHhcCCccc
Q 014860          155 EMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-----SIRSYNILFTAFLSRGKNTY  229 (417)
Q Consensus       155 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-----~~~~~~~li~~~~~~g~~~~  229 (417)
                      .|.+.-..+...+   .+...|-..|....+.++.++|.+++++....    +.+     -...|.++++.-..-|.   
T Consensus      1443 saeDferlvrssP---NSSi~WI~YMaf~LelsEiekAR~iaerAL~t----IN~REeeEKLNiWiA~lNlEn~yG~--- 1512 (1710)
T KOG1070|consen 1443 SAEDFERLVRSSP---NSSILWIRYMAFHLELSEIEKARKIAERALKT----INFREEEEKLNIWIAYLNLENAYGT--- 1512 (1710)
T ss_pred             CHHHHHHHHhcCC---CcchHHHHHHHHHhhhhhhHHHHHHHHHHhhh----CCcchhHHHHHHHHHHHhHHHhhCc---
Confidence            3444444444432   34677888888888999999999999988764    222     13468888888888887   


Q ss_pred             hhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860          230 INHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNA  309 (417)
Q Consensus       230 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A  309 (417)
                           -+...++|++..+..  -.-.+|..|...|.+.+..++|-++++.|.++.+  -....|...+..+.+.++-+.|
T Consensus      1513 -----eesl~kVFeRAcqyc--d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa 1583 (1710)
T KOG1070|consen 1513 -----EESLKKVFERACQYC--DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAA 1583 (1710)
T ss_pred             -----HHHHHHHHHHHHHhc--chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHH
Confidence                 788888998888752  2345778889999999999999999999988665  5667888999999999999999


Q ss_pred             HHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          310 RELCDEMKRKGFV-PSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       310 ~~l~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      ..++.+..+.=.+ -......-.+..-.+.|+.+.+..+|+..... .+--...|+..|+.=.+.|+.+.+..+|++...
T Consensus      1584 ~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~a-yPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~ 1662 (1710)
T KOG1070|consen 1584 RELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSA-YPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIE 1662 (1710)
T ss_pred             HHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhh-CccchhHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence            9999888765111 12344455556667889999999999988876 233456899999999999999999999999999


Q ss_pred             CCC-C-Chh-hHHHHHHHHHhhcC
Q 014860          389 KNL-I-DGY-TYTKLLDVLEDDFG  409 (417)
Q Consensus       389 ~~~-p-~~~-t~~~ll~~~~~~~~  409 (417)
                      .++ | ... -|...|+ |.+..|
T Consensus      1663 l~l~~kkmKfffKkwLe-yEk~~G 1685 (1710)
T KOG1070|consen 1663 LKLSIKKMKFFFKKWLE-YEKSHG 1685 (1710)
T ss_pred             cCCChhHhHHHHHHHHH-HHHhcC
Confidence            988 3 443 3444443 444434

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.65  E-value=5.2e-05  Score=73.23  Aligned_cols=233  Identities=14%  Similarity=0.134  Sum_probs=160.1

Q ss_pred             HHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHH
Q 014860          143 MTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFL  222 (417)
Q Consensus       143 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~  222 (417)
                      ....+...|++++|++.+..-.+.-.  ............+.+.|+.++|..+|..+.++     .|+...|-..+..+.
T Consensus        10 ~~~il~e~g~~~~AL~~L~~~~~~I~--Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-----NPdn~~Yy~~L~~~~   82 (517)
T PF12569_consen   10 KNSILEEAGDYEEALEHLEKNEKQIL--DKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-----NPDNYDYYRGLEEAL   82 (517)
T ss_pred             HHHHHHHCCCHHHHHHHHHhhhhhCC--CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCcHHHHHHHHHHH
Confidence            34567789999999999977544332  45667778889999999999999999999987     566665554444443


Q ss_pred             -hcCCccchhhhhHHHHHHHHHHH----------------------------------HHCCCCCCHHHHHHHHHHHHhc
Q 014860          223 -SRGKNTYINHVYMETIRCLFKQM----------------------------------VNDGIEPDIFSLNSMIKGYILS  267 (417)
Q Consensus       223 -~~g~~~~~~~~~~~~a~~~~~~m----------------------------------~~~g~~p~~~~~~~li~~~~~~  267 (417)
                       -....+.   ...+...++|+++                                  ...|++   .+|+.|-..|...
T Consensus        83 g~~~~~~~---~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~  156 (517)
T PF12569_consen   83 GLQLQLSD---EDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDP  156 (517)
T ss_pred             hhhccccc---ccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcCh
Confidence             2210000   0034444444444                                  334432   2344444455544


Q ss_pred             CCHHHHHHHHHHhhhhC-------------CCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHH
Q 014860          268 NHVNDALRIFHQMGVVY-------------NYLPNSF--SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSL  331 (417)
Q Consensus       268 g~~~~a~~~~~~m~~~~-------------~~~~~~~--~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~l  331 (417)
                      .+.+-..+++.......             .-.|+..  ++..+...|-..|++++|++.+++..+.  .|+ +..|..-
T Consensus       157 ~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~K  234 (517)
T PF12569_consen  157 EKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTK  234 (517)
T ss_pred             hHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHH
Confidence            55555555655553211             1124443  4456677788999999999999998886  455 6788888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860          332 VSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       332 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  391 (417)
                      .+.+-+.|++++|.+.++...... .-|...-+-.+..+.+.|++++|.+++...-..+.
T Consensus       235 arilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~  293 (517)
T PF12569_consen  235 ARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV  293 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence            999999999999999999988762 24566667777888999999999999998887775

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.63  E-value=1.4e-05  Score=73.47  Aligned_cols=223  Identities=11%  Similarity=0.077  Sum_probs=171.4

Q ss_pred             HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860          147 LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK  226 (417)
Q Consensus       147 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~  226 (417)
                      +.-.|+.-.+.+-|+..++....  +...|--+..+|....+-++.++.|.+..+-.    +-+..+|..--....-.++
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~--~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld----p~n~dvYyHRgQm~flL~q  409 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPA--FNSLYIKRAAAYADENQSEKMWKDFNKAEDLD----PENPDVYYHRGQMRFLLQQ  409 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcc--cchHHHHHHHHHhhhhccHHHHHHHHHHHhcC----CCCCchhHhHHHHHHHHHH
Confidence            34578888999999999988764  33347778888999999999999999998752    3356667776777777777


Q ss_pred             ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 014860          227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRT  306 (417)
Q Consensus       227 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~  306 (417)
                              +++|..=|++..... +-+...|--+--+..+.+++++++..|++..+  .++....+|+.....+...+++
T Consensus       410 --------~e~A~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqF  478 (606)
T KOG0547|consen  410 --------YEEAIADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQF  478 (606)
T ss_pred             --------HHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhH
Confidence                    999999999988764 33556666666666788999999999999987  5667788999999999999999


Q ss_pred             HHHHHHHHHHHHC-----CCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhH
Q 014860          307 KNARELCDEMKRK-----GFVPSSKSY--NSLVSALALNGEVEETVKNLWEMIEKQRPV-DFITYRTVLDEICRRGRAGE  378 (417)
Q Consensus       307 ~~A~~l~~~m~~~-----g~~p~~~~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~  378 (417)
                      +.|.+.|+...+.     ++..+...+  -+++..=.+ +++..|.+++.+..+.  .| ....|..|...-.+.|+.++
T Consensus       479 d~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~~~a~~Ll~KA~e~--Dpkce~A~~tlaq~~lQ~~~i~e  555 (606)
T KOG0547|consen  479 DKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDINQAENLLRKAIEL--DPKCEQAYETLAQFELQRGKIDE  555 (606)
T ss_pred             HHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhHHHHHHHHHHHHcc--CchHHHHHHHHHHHHHHHhhHHH
Confidence            9999999987753     222222222  222222233 8899999999998875  33 33578999999999999999


Q ss_pred             HHHHHHHHHHC
Q 014860          379 AMKLLKELQNK  389 (417)
Q Consensus       379 A~~~~~~m~~~  389 (417)
                      |.++|++-...
T Consensus       556 AielFEksa~l  566 (606)
T KOG0547|consen  556 AIELFEKSAQL  566 (606)
T ss_pred             HHHHHHHHHHH
Confidence            99999986653

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=0.00018  Score=65.01  Aligned_cols=267  Identities=9%  Similarity=0.074  Sum_probs=155.2

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA  192 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a  192 (417)
                      ..++...|...+-.+....-++-|.+....+.+.+...|+.++|...|+.....++  -+........-.+.+.|++++.
T Consensus       208 ~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dp--y~i~~MD~Ya~LL~~eg~~e~~  285 (564)
T KOG1174|consen  208 FNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANP--DNVEAMDLYAVLLGQEGGCEQD  285 (564)
T ss_pred             HhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCCh--hhhhhHHHHHHHHHhccCHhhH
Confidence            34444555555555544555788888888999999999999999999988877553  2222223333334466666666


Q ss_pred             HHHHHHhHhCCCCCCCCCHHHHHHHHH----------------------------------HHHhcCCccchhhhhHHHH
Q 014860          193 VYVFKYMKNSRNLECRPSIRSYNILFT----------------------------------AFLSRGKNTYINHVYMETI  238 (417)
Q Consensus       193 ~~~~~~m~~~~~~g~~p~~~~~~~li~----------------------------------~~~~~g~~~~~~~~~~~~a  238 (417)
                      ..+...+-...    .-+...|-.-..                                  .+...++        .++|
T Consensus       286 ~~L~~~Lf~~~----~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R--------~~~A  353 (564)
T KOG1174|consen  286 SALMDYLFAKV----KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALER--------HTQA  353 (564)
T ss_pred             HHHHHHHHhhh----hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccc--------hHHH
Confidence            66555554421    112222222222                                  2333333        4444


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHH
Q 014860          239 RCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLI-HGLC-AQGRTKNARELCDEM  316 (417)
Q Consensus       239 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li-~~~~-~~g~~~~A~~l~~~m  316 (417)
                      .--|+...... +-+...|.-|+..|...|++.+|.-+-++..+.  ++.+..+.+.+- ..+. ...--++|.++++.-
T Consensus       354 ~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~--~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~  430 (564)
T KOG1174|consen  354 VIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL--FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKS  430 (564)
T ss_pred             HHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH--hhcchhhhhhhcceeeccCchhHHHHHHHHHhh
Confidence            44444444332 234445555555555555555554444433321  112222222220 1111 111234455554443


Q ss_pred             HHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChh
Q 014860          317 KRKGFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGY  395 (417)
Q Consensus       317 ~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~  395 (417)
                      ..  +.|+ ....+.+...|...|..+++..+++.-...  .||....+.|.+.+...+.+.+|+..|......+..+..
T Consensus       431 L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~~  506 (564)
T KOG1174|consen  431 LK--INPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSKR  506 (564)
T ss_pred             hc--cCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccchH
Confidence            32  3455 345677888888999999999999887764  689888899999999999999999999988887655666


Q ss_pred             hHHHH
Q 014860          396 TYTKL  400 (417)
Q Consensus       396 t~~~l  400 (417)
                      +...+
T Consensus       507 sl~Gl  511 (564)
T KOG1174|consen  507 TLRGL  511 (564)
T ss_pred             HHHHH
Confidence            65543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.58  E-value=1.1e-05  Score=77.57  Aligned_cols=241  Identities=10%  Similarity=0.049  Sum_probs=177.3

Q ss_pred             CCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHH
Q 014860          133 FRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIR  212 (417)
Q Consensus       133 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~  212 (417)
                      ++|--..=..+...+...|-...|..+++.+          ..|.-+|.+|+..|+..+|..+..+-.++     +||..
T Consensus       394 lpp~Wq~q~~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek-----~~d~~  458 (777)
T KOG1128|consen  394 LPPIWQLQRLLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEK-----DPDPR  458 (777)
T ss_pred             CCCcchHHHHHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcC-----CCcch
Confidence            3333333444566777888888888888766          56777889999999999999888888775     68888


Q ss_pred             HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHH
Q 014860          213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS  292 (417)
Q Consensus       213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  292 (417)
                      .|..+.+......-        +++|.++++.....       .-..+-....+.++++++.+.|+.-.+...  .-..+
T Consensus       459 lyc~LGDv~~d~s~--------yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~np--lq~~~  521 (777)
T KOG1128|consen  459 LYCLLGDVLHDPSL--------YEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINP--LQLGT  521 (777)
T ss_pred             hHHHhhhhccChHH--------HHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCc--cchhH
Confidence            88777776655544        88888888765432       111111112236889999998887655332  34557


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014860          293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR  372 (417)
Q Consensus       293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  372 (417)
                      |-.+-.+..+.++++.|.+.|..-.... +-+...||.+-.+|.+.|+-.+|...+.+..+-. .-+-..|...+....+
T Consensus       522 wf~~G~~ALqlek~q~av~aF~rcvtL~-Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvd  599 (777)
T KOG1128|consen  522 WFGLGCAALQLEKEQAAVKAFHRCVTLE-PDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVD  599 (777)
T ss_pred             HHhccHHHHHHhhhHHHHHHHHHHhhcC-CCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhh
Confidence            7777777888899999999999887642 2256889999999999999999999999998875 4455577788888889


Q ss_pred             cCCHhHHHHHHHHHHHCCC--CChhhHHHHHHHHHhh
Q 014860          373 RGRAGEAMKLLKELQNKNL--IDGYTYTKLLDVLEDD  407 (417)
Q Consensus       373 ~g~~~~A~~~~~~m~~~~~--p~~~t~~~ll~~~~~~  407 (417)
                      .|.+++|.+.+.+|.....  .|......++....+.
T Consensus       600 vge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~  636 (777)
T KOG1128|consen  600 VGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEG  636 (777)
T ss_pred             cccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhh
Confidence            9999999999999877654  3666666666665544

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.54  E-value=0.00012  Score=75.44  Aligned_cols=241  Identities=9%  Similarity=0.019  Sum_probs=153.7

Q ss_pred             ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC---CCHHHHHHHHHHHHHhCCHHHH
Q 014860          116 DPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC---GTEALYNTIIYFFAEARKLSRA  192 (417)
Q Consensus       116 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~~li~~~~~~g~~~~a  192 (417)
                      .++.|-++-+.++..   +-+...|-.-|....+.++.++|+++.++.+..-...   --...|.++++.-..-|.-+..
T Consensus      1440 ~pesaeDferlvrss---PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl 1516 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSS---PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESL 1516 (1710)
T ss_pred             CCcCHHHHHHHHhcC---CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHH
Confidence            344455554444322   3355566666777777778888888877777653221   1234666777776677777777


Q ss_pred             HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860          193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVND  272 (417)
Q Consensus       193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  272 (417)
                      .++|++..+.     --....|..|...|.+.++        .++|-++|+.|.+.= .-...+|...+..+.+..+-+.
T Consensus      1517 ~kVFeRAcqy-----cd~~~V~~~L~~iy~k~ek--------~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~a 1582 (1710)
T KOG1070|consen 1517 KKVFERACQY-----CDAYTVHLKLLGIYEKSEK--------NDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEA 1582 (1710)
T ss_pred             HHHHHHHHHh-----cchHHHHHHHHHHHHHhhc--------chhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHH
Confidence            7888887764     1123457777777877777        778888888877542 2456677777777777777777


Q ss_pred             HHHHHHHhhhhCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860          273 ALRIFHQMGVVYNYLPN---SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLW  349 (417)
Q Consensus       273 a~~~~~~m~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~  349 (417)
                      |..++.+..+-   .|.   .....-.+..-.+.|+.+.+..+|+.....-.+ -...|+.+|++-.++|+.+.+..+|+
T Consensus      1583 a~~lL~rAL~~---lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfe 1658 (1710)
T KOG1070|consen 1583 ARELLKRALKS---LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFE 1658 (1710)
T ss_pred             HHHHHHHHHhh---cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHH
Confidence            77777776541   233   233334444456777888888888877765322 45568888888888888888888888


Q ss_pred             HHHHcCCCCCH--HHHHHHHHHHHHcCCHh
Q 014860          350 EMIEKQRPVDF--ITYRTVLDEICRRGRAG  377 (417)
Q Consensus       350 ~m~~~g~~p~~--~~~~~li~~~~~~g~~~  377 (417)
                      +..+.++.|-.  ..|...+..=-..|+-+
T Consensus      1659 Rvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1659 RVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred             HHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence            88877665543  24444444333445543

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.53  E-value=0.00052  Score=65.55  Aligned_cols=290  Identities=10%  Similarity=0.140  Sum_probs=167.7

Q ss_pred             hhHHHHHHhcCCCC---CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 014860           88 DTQFRCAVSELPPR---FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQML  164 (417)
Q Consensus        88 ~~~~~~~l~~~p~~---~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  164 (417)
                      ...|.++|..+|..   ..|...+.-....+-++.++++|+...     +.++..-+--|..++..+++++|.+.+....
T Consensus       122 R~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYL-----k~~P~~~eeyie~L~~~d~~~eaa~~la~vl  196 (835)
T KOG2047|consen  122 RRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYL-----KVAPEAREEYIEYLAKSDRLDEAAQRLATVL  196 (835)
T ss_pred             HHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHH-----hcCHHHHHHHHHHHHhccchHHHHHHHHHhc
Confidence            34567777777755   568888888888888889999998876     4566667888888888999998888777776


Q ss_pred             cCCCCC-----C------------------------------------C--HHHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860          165 ATPSFC-----G------------------------------------T--EALYNTIIYFFAEARKLSRAVYVFKYMKN  201 (417)
Q Consensus       165 ~~~~~~-----~------------------------------------~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~  201 (417)
                      ..+...     .                                    |  ...|++|...|.+.|++++|..+|++...
T Consensus       197 n~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~  276 (835)
T KOG2047|consen  197 NQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQ  276 (835)
T ss_pred             CchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            532110     1                                    1  24677777778888888888888877765


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCcc--------------chhhhhHHHHHHHHHHHHHCC-----------CCCCHHH
Q 014860          202 SRNLECRPSIRSYNILFTAFLSRGKNT--------------YINHVYMETIRCLFKQMVNDG-----------IEPDIFS  256 (417)
Q Consensus       202 ~~~~g~~p~~~~~~~li~~~~~~g~~~--------------~~~~~~~~~a~~~~~~m~~~g-----------~~p~~~~  256 (417)
                      .     ..++.-|+.+.++|+.-....              .-....++-.+.-|+.+.+.+           -+.++.+
T Consensus       277 ~-----v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~e  351 (835)
T KOG2047|consen  277 T-----VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEE  351 (835)
T ss_pred             h-----heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHH
Confidence            4     334444555555554322100              000111333334444443321           0112222


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHH
Q 014860          257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLP------NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS---SKS  327 (417)
Q Consensus       257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~~  327 (417)
                      |..-+..  ..|+..+-..++.+..+  .+.|      -...|..+...|-+.|+++.|..+|+...+-..+--   ..+
T Consensus       352 W~kRV~l--~e~~~~~~i~tyteAv~--~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~v  427 (835)
T KOG2047|consen  352 WHKRVKL--YEGNAAEQINTYTEAVK--TVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEV  427 (835)
T ss_pred             HHhhhhh--hcCChHHHHHHHHHHHH--ccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHH
Confidence            2222221  13444555555555543  2222      234677778888888888888888887765433211   233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcC-----------CCC------CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          328 YNSLVSALALNGEVEETVKNLWEMIEKQ-----------RPV------DFITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       328 ~~~li~~~~~~g~~~~A~~~~~~m~~~g-----------~~p------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      |..-...-.++.+++.|+++++.....-           .++      +...|...++.--..|-++....+++++.+..
T Consensus       428 w~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr  507 (835)
T KOG2047|consen  428 WCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR  507 (835)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence            4444444455667777777766654321           011      23345555555555666777777777776655


Q ss_pred             C
Q 014860          391 L  391 (417)
Q Consensus       391 ~  391 (417)
                      +
T Consensus       508 i  508 (835)
T KOG2047|consen  508 I  508 (835)
T ss_pred             c
Confidence            4

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.48  E-value=2.1e-05  Score=75.69  Aligned_cols=231  Identities=11%  Similarity=0.078  Sum_probs=179.9

Q ss_pred             HHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 014860          106 ELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE  185 (417)
Q Consensus       106 ~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~  185 (417)
                      .+.+.+...|-...|+.+|+..          +.|..+|..|...|+-.+|..+..+..+.+   ||...|..+.+....
T Consensus       403 ~laell~slGitksAl~I~Erl----------emw~~vi~CY~~lg~~~kaeei~~q~lek~---~d~~lyc~LGDv~~d  469 (777)
T KOG1128|consen  403 LLAELLLSLGITKSALVIFERL----------EMWDPVILCYLLLGQHGKAEEINRQELEKD---PDPRLYCLLGDVLHD  469 (777)
T ss_pred             HHHHHHHHcchHHHHHHHHHhH----------HHHHHHHHHHHHhcccchHHHHHHHHhcCC---CcchhHHHhhhhccC
Confidence            4566678889999999999765          456778889999999999999999888843   899999999999988


Q ss_pred             hCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014860          186 ARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYI  265 (417)
Q Consensus       186 ~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  265 (417)
                      --.+++|.++++....+       --..++.   ...++++        ++++.+.|+.-.+.+ +.-..+|-.+--+..
T Consensus       470 ~s~yEkawElsn~~sar-------A~r~~~~---~~~~~~~--------fs~~~~hle~sl~~n-plq~~~wf~~G~~AL  530 (777)
T KOG1128|consen  470 PSLYEKAWELSNYISAR-------AQRSLAL---LILSNKD--------FSEADKHLERSLEIN-PLQLGTWFGLGCAAL  530 (777)
T ss_pred             hHHHHHHHHHhhhhhHH-------HHHhhcc---ccccchh--------HHHHHHHHHHHhhcC-ccchhHHHhccHHHH
Confidence            88899999999887653       0111121   2233677        999999998877654 456678888888888


Q ss_pred             hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860          266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETV  345 (417)
Q Consensus       266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  345 (417)
                      +.++++.|.+.|.....  +-+-+...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.+++|.
T Consensus       531 qlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~  607 (777)
T KOG1128|consen  531 QLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAI  607 (777)
T ss_pred             HHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHH
Confidence            99999999999998865  334467789999999999999999999999999887 446667777788888999999999


Q ss_pred             HHHHHHHHcC-CCCCHHHHHHHHHHHH
Q 014860          346 KNLWEMIEKQ-RPVDFITYRTVLDEIC  371 (417)
Q Consensus       346 ~~~~~m~~~g-~~p~~~~~~~li~~~~  371 (417)
                      +.+..+.... ..-|...-..++....
T Consensus       608 ~A~~rll~~~~~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  608 KAYHRLLDLRKKYKDDEVLLIIVRTVL  634 (777)
T ss_pred             HHHHHHHHhhhhcccchhhHHHHHHHH
Confidence            9999887641 1124444444444433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.44  E-value=0.00011  Score=64.32  Aligned_cols=185  Identities=10%  Similarity=0.033  Sum_probs=123.3

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860          171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV  246 (417)
Q Consensus       171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~  246 (417)
                      .....+-.+...+.+.|++++|...|+++...     .|+    ..++..+..++...|+        +++|...++++.
T Consensus        31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~--------~~~A~~~~~~~l   97 (235)
T TIGR03302        31 WPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGD--------YAEAIAAADRFI   97 (235)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHH
Confidence            45677788888899999999999999998875     333    2467778888999999        999999999998


Q ss_pred             HCCCCCCH--HHHHHHHHHHHhc--------CCHHHHHHHHHHhhhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860          247 NDGIEPDI--FSLNSMIKGYILS--------NHVNDALRIFHQMGVVYNYLPNS-FSYDYLIHGLCAQGRTKNARELCDE  315 (417)
Q Consensus       247 ~~g~~p~~--~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~  315 (417)
                      +.......  .++..+-.++...        |+.++|.+.|+.+...   .|+. ..+..+.... .   ...      .
T Consensus        98 ~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~-~---~~~------~  164 (235)
T TIGR03302        98 RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMD-Y---LRN------R  164 (235)
T ss_pred             HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHH-H---HHH------H
Confidence            75421111  1344444444443        6788888888888663   2332 2222221110 0   000      0


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860          316 MKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQ--RPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       316 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  389 (417)
                      ..        .....+...|.+.|+.++|...+++..+..  -+.....+..+..++...|+.++|..+++.+...
T Consensus       165 ~~--------~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       165 LA--------GKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HH--------HHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            00        011245567888899999999998888762  2223567888888999999999999988887665

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=0.00011  Score=69.18  Aligned_cols=257  Identities=14%  Similarity=0.099  Sum_probs=190.9

Q ss_pred             HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 014860          109 NVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK  188 (417)
Q Consensus       109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~  188 (417)
                      ..+.+.|+...|.-.|+...++.  +-+.+.|..|...-..+++-..|+..+.+..+...  .|....-+|.-.|...|.
T Consensus       293 ~~lm~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP--~NleaLmaLAVSytNeg~  368 (579)
T KOG1125|consen  293 CNLMKNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENENEQNAISALRRCLELDP--TNLEALMALAVSYTNEGL  368 (579)
T ss_pred             HHHHhcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC--ccHHHHHHHHHHHhhhhh
Confidence            33467888999999999887766  66899999999999999999999999999998876  688888999999999999


Q ss_pred             HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC----ccchhhhhHHHHHHHHHHHH-HCCCCCCHHHHHHHHHH
Q 014860          189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK----NTYINHVYMETIRCLFKQMV-NDGIEPDIFSLNSMIKG  263 (417)
Q Consensus       189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~----~~~~~~~~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~  263 (417)
                      -.+|++.++.-....     |.   |..+..+ ...++    .+...........++|-++. ..+..+|..+...|--.
T Consensus       369 q~~Al~~L~~Wi~~~-----p~---y~~l~~a-~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVL  439 (579)
T KOG1125|consen  369 QNQALKMLDKWIRNK-----PK---YVHLVSA-GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVL  439 (579)
T ss_pred             HHHHHHHHHHHHHhC-----cc---chhcccc-CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHH
Confidence            999999999886641     11   0000000 00000    01122223677777777766 45545788888888888


Q ss_pred             HHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHH
Q 014860          264 YILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALALNGEVE  342 (417)
Q Consensus       264 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~  342 (417)
                      |--.|++++|...|+.....  -+-|...||-|-..++...+.++|+.-|.+..+.  .|+ +++...|--+|...|.++
T Consensus       440 y~ls~efdraiDcf~~AL~v--~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~yk  515 (579)
T KOG1125|consen  440 YNLSGEFDRAVDCFEAALQV--KPNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYK  515 (579)
T ss_pred             HhcchHHHHHHHHHHHHHhc--CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHH
Confidence            99999999999999988652  2347889999999999999999999999999874  666 345555667789999999


Q ss_pred             HHHHHHHHHHHc---------CCCCCHHHHHHHHHHHHHcCCHhHHHHH
Q 014860          343 ETVKNLWEMIEK---------QRPVDFITYRTVLDEICRRGRAGEAMKL  382 (417)
Q Consensus       343 ~A~~~~~~m~~~---------g~~p~~~~~~~li~~~~~~g~~~~A~~~  382 (417)
                      +|.+.|-..+..         +..++...|.+|=.++.-.++.|-+.+.
T Consensus       516 EA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  516 EAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             HHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            999988765542         1123445777777777777777655443

>PLN02789 farnesyltranstransferase

Probab=98.42  E-value=0.001  Score=60.67  Aligned_cols=134  Identities=9%  Similarity=0.022  Sum_probs=61.2

Q ss_pred             HhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH
Q 014860          111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAK-MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL  189 (417)
Q Consensus       111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~  189 (417)
                      +...+..++|+.+...+.+..  +-+..+|+.--.++...| .++++++.++.+.+...  .+..+|+.-.-.+.+.|+.
T Consensus        47 l~~~e~serAL~lt~~aI~ln--P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np--knyqaW~~R~~~l~~l~~~  122 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLN--PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP--KNYQIWHHRRWLAEKLGPD  122 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC--cchHHhHHHHHHHHHcCch
Confidence            344455555555555554322  223333333333344444 34555555555554433  3334444443334444432


Q ss_pred             --HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860          190 --SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMI  261 (417)
Q Consensus       190 --~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li  261 (417)
                        ++++.+++.+.+.    -+-+..+|+...-.+...|+        ++++++.++++.+.+ .-|...|+...
T Consensus       123 ~~~~el~~~~kal~~----dpkNy~AW~~R~w~l~~l~~--------~~eeL~~~~~~I~~d-~~N~sAW~~R~  183 (320)
T PLN02789        123 AANKELEFTRKILSL----DAKNYHAWSHRQWVLRTLGG--------WEDELEYCHQLLEED-VRNNSAWNQRY  183 (320)
T ss_pred             hhHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHhhh--------HHHHHHHHHHHHHHC-CCchhHHHHHH
Confidence              4445555555443    12344555555555555555        555555555555544 22334444433

>PLN02789 farnesyltranstransferase

Probab=98.42  E-value=0.00047  Score=62.82  Aligned_cols=241  Identities=9%  Similarity=0.038  Sum_probs=172.9

Q ss_pred             cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC-CHHHH
Q 014860          114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR-KLSRA  192 (417)
Q Consensus       114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~a  192 (417)
                      .+++.+|...|+.+.                   ...+..++|..+.+.+++..+  .+..+|+.--.++...| +++++
T Consensus        33 ~~~~~~a~~~~ra~l-------------------~~~e~serAL~lt~~aI~lnP--~~ytaW~~R~~iL~~L~~~l~ee   91 (320)
T PLN02789         33 TPEFREAMDYFRAVY-------------------ASDERSPRALDLTADVIRLNP--GNYTVWHFRRLCLEALDADLEEE   91 (320)
T ss_pred             CHHHHHHHHHHHHHH-------------------HcCCCCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHHcchhHHHH
Confidence            455666776666553                   346788899999999988764  45567776666677777 68999


Q ss_pred             HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860          193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVND  272 (417)
Q Consensus       193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  272 (417)
                      +..++++.+.    -+-+..+|+.--..+.+.|+.      ..++++.+++.+.+.. +-+-.+|+-..-++...|++++
T Consensus        92 L~~~~~~i~~----npknyqaW~~R~~~l~~l~~~------~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~e  160 (320)
T PLN02789         92 LDFAEDVAED----NPKNYQIWHHRRWLAEKLGPD------AANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWED  160 (320)
T ss_pred             HHHHHHHHHH----CCcchHHhHHHHHHHHHcCch------hhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHH
Confidence            9999999875    244566788766666666651      0367888998888775 4578899988888889999999


Q ss_pred             HHHHHHHhhhhCCCCCCHHHHHHHHHHHHhc---CCH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCH
Q 014860          273 ALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQ---GRT----KNARELCDEMKRKGFVPSSKSYNSLVSALALN----GEV  341 (417)
Q Consensus       273 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~---g~~----~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~----g~~  341 (417)
                      +++.++++.+ .+ ..|...|+.....+.+.   |..    ++..+....+..... -|...|+-+...+...    +..
T Consensus       161 eL~~~~~~I~-~d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~  237 (320)
T PLN02789        161 ELEYCHQLLE-ED-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSD  237 (320)
T ss_pred             HHHHHHHHHH-HC-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccc
Confidence            9999999987 33 35666777766665554   323    467777767776543 3678888888888773    345


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC------------------CHhHHHHHHHHHHHCC
Q 014860          342 EETVKNLWEMIEKQRPVDFITYRTVLDEICRRG------------------RAGEAMKLLKELQNKN  390 (417)
Q Consensus       342 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------------------~~~~A~~~~~~m~~~~  390 (417)
                      .+|.+.+.+....+ ..+......|++.|+...                  ..++|.++++.|.+.+
T Consensus       238 ~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l~~~d  303 (320)
T PLN02789        238 PEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSELEVAD  303 (320)
T ss_pred             hhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHHHhhC
Confidence            66888888876643 346678888999998643                  3478999999995443

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.41  E-value=0.00019  Score=72.98  Aligned_cols=82  Identities=7%  Similarity=0.126  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860          212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF  291 (417)
Q Consensus       212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  291 (417)
                      ..+-.+..+|-+.|+        .+++.++|+++.+.. +-|..+.|.+-..|... ++++|++++.+....        
T Consensus       117 ~Al~~LA~~Ydk~g~--------~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------  178 (906)
T PRK14720        117 LALRTLAEAYAKLNE--------NKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR--------  178 (906)
T ss_pred             HHHHHHHHHHHHcCC--------hHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------
Confidence            466667777777788        888888888888776 55677788888888877 888888887777552        


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRK  319 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~  319 (417)
                              +...+++..+.++|.++...
T Consensus       179 --------~i~~kq~~~~~e~W~k~~~~  198 (906)
T PRK14720        179 --------FIKKKQYVGIEEIWSKLVHY  198 (906)
T ss_pred             --------HHhhhcchHHHHHHHHHHhc
Confidence                    44444555555555555543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.38  E-value=0.0001  Score=62.85  Aligned_cols=153  Identities=14%  Similarity=0.078  Sum_probs=68.6

Q ss_pred             HHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc
Q 014860          145 RKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR  224 (417)
Q Consensus       145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~  224 (417)
                      ..+...|+-+....+.........  .|....+..+....+.|++..|+..|++...-    -++|...|+.+--+|.+.
T Consensus        74 ~a~~~~G~a~~~l~~~~~~~~~~~--~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l----~p~d~~~~~~lgaaldq~  147 (257)
T COG5010          74 TALYLRGDADSSLAVLQKSAIAYP--KDRELLAAQGKNQIRNGNFGEAVSVLRKAARL----APTDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHhcccccchHHHHhhhhccCc--ccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----CCCChhhhhHHHHHHHHc
Confidence            344444444444444444332222  33334444444455555555555555555442    244445555555555555


Q ss_pred             CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC
Q 014860          225 GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG  304 (417)
Q Consensus       225 g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g  304 (417)
                      |+        .++|..-|.+..+.. .-+...+|.+.-.|.-.|+.+.|..++.....  .-..|...-..+.......|
T Consensus       148 Gr--------~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l--~~~ad~~v~~NLAl~~~~~g  216 (257)
T COG5010         148 GR--------FDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYL--SPAADSRVRQNLALVVGLQG  216 (257)
T ss_pred             cC--------hhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHh--CCCCchHHHHHHHHHHhhcC
Confidence            55        455554444444432 12233344444444444555555555544433  11124444444444455555


Q ss_pred             CHHHHHHHHH
Q 014860          305 RTKNARELCD  314 (417)
Q Consensus       305 ~~~~A~~l~~  314 (417)
                      ++++|+++..
T Consensus       217 ~~~~A~~i~~  226 (257)
T COG5010         217 DFREAEDIAV  226 (257)
T ss_pred             ChHHHHhhcc
Confidence            5555554443

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.37  E-value=8.4e-05  Score=65.09  Aligned_cols=198  Identities=9%  Similarity=0.017  Sum_probs=129.4

Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC-H
Q 014860          134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS-I  211 (417)
Q Consensus       134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~  211 (417)
                      ......+-.....+...|++++|...++.+.......+. ...+..+..+|.+.|++++|...|+++.+..  .-.+. .
T Consensus        30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~  107 (235)
T TIGR03302        30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--PNHPDAD  107 (235)
T ss_pred             cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCchH
Confidence            346677777888889999999999999999876542121 2467788899999999999999999998752  00111 1


Q ss_pred             HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCH
Q 014860          212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNS  290 (417)
Q Consensus       212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  290 (417)
                      .++..+-.++..............++|.+.|+.+.+..  |+. ..+.++.... .   .      ......        
T Consensus       108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~-~---~------~~~~~~--------  167 (235)
T TIGR03302       108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD-Y---L------RNRLAG--------  167 (235)
T ss_pred             HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH-H---H------HHHHHH--------
Confidence            23444445554431000001112899999999998763  443 2332221110 0   0      000111        


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGF--VPSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                       ....+...|.+.|++++|...+++..+...  +.....+..+..++.+.|+.++|..+++.+...
T Consensus       168 -~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       168 -KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             -HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence             112455678899999999999999887521  223578889999999999999999998888764

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.34  E-value=0.00033  Score=60.76  Aligned_cols=279  Identities=14%  Similarity=0.111  Sum_probs=175.7

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH-HHHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT-IIYF  182 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~-li~~  182 (417)
                      ++.++..+.+..++..|++++..-.++.  +.+......+..+|-...++..|-+.++++-...   |...-|.. -...
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~---P~~~qYrlY~AQS   87 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLH---PELEQYRLYQAQS   87 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---hHHHHHHHHHHHH
Confidence            5667777788889999999998775543  3477888888888999999999999999987754   44444432 2356


Q ss_pred             HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHH--hcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860          183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFL--SRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM  260 (417)
Q Consensus       183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~--~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  260 (417)
                      +.+++.+.+|+++...|...      ++...-..-+.+-.  ..++        +-.+..+.++....|   +..+.+..
T Consensus        88 LY~A~i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~D--------l~g~rsLveQlp~en---~Ad~~in~  150 (459)
T KOG4340|consen   88 LYKACIYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGD--------LPGSRSLVEQLPSEN---EADGQINL  150 (459)
T ss_pred             HHHhcccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhccccc--------CcchHHHHHhccCCC---ccchhccc
Confidence            66889999999999988763      33333223333332  3444        566666666655322   23333333


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-------------CCHHH
Q 014860          261 IKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV-------------PSSKS  327 (417)
Q Consensus       261 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-------------p~~~~  327 (417)
                      --...+.|+++.|.+-|+...+..|..|- ..||..+..| +.|++..|++...++.+.|++             ||+..
T Consensus       151 gCllykegqyEaAvqkFqaAlqvsGyqpl-lAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs  228 (459)
T KOG4340|consen  151 GCLLYKEGQYEAAVQKFQAALQVSGYQPL-LAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS  228 (459)
T ss_pred             hheeeccccHHHHHHHHHHHHhhcCCCch-hHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc
Confidence            33345788999999999888876677654 4677665444 557888899988888887755             23221


Q ss_pred             ---------------HHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860          328 ---------------YNSLVSALALNGEVEETVKNLWEMIEK-QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       328 ---------------~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  391 (417)
                                     +|.-...+.+.|+.+.|.+-+-.|.-+ .-..|++|.+.+.-.- ..|++.+..+-+.-+...+.
T Consensus       229 vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP  307 (459)
T KOG4340|consen  229 VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP  307 (459)
T ss_pred             ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC
Confidence                           222223345667777777777766543 2334666665442221 12334444444455555443


Q ss_pred             CChhhHHHHHHHHHhh
Q 014860          392 IDGYTYTKLLDVLEDD  407 (417)
Q Consensus       392 p~~~t~~~ll~~~~~~  407 (417)
                      -+..||..++-.||+.
T Consensus       308 fP~ETFANlLllyCKN  323 (459)
T KOG4340|consen  308 FPPETFANLLLLYCKN  323 (459)
T ss_pred             CChHHHHHHHHHHhhh
Confidence            3566777666666654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=0.00041  Score=59.29  Aligned_cols=252  Identities=12%  Similarity=0.077  Sum_probs=157.8

Q ss_pred             HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860          108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR  187 (417)
Q Consensus       108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g  187 (417)
                      ++-+--.|++..++..-......   +-+...-..+-++|...|.+.....   ..+... . +....+..+......-+
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~---~~~~e~d~y~~raylAlg~~~~~~~---eI~~~~-~-~~lqAvr~~a~~~~~e~   86 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSS---KTDVELDVYMYRAYLALGQYQIVIS---EIKEGK-A-TPLQAVRLLAEYLELES   86 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhccc---cchhHHHHHHHHHHHHccccccccc---cccccc-C-ChHHHHHHHHHHhhCcc
Confidence            34445567787777766554322   2455555566677777777654322   222221 1 33333333333333345


Q ss_pred             CHHHHH-HHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860          188 KLSRAV-YVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL  266 (417)
Q Consensus       188 ~~~~a~-~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  266 (417)
                      +.++.+ ++.+.+...   ....+...-..-...|+..|+        .++|++......      +......=+..+.+
T Consensus        87 ~~~~~~~~l~E~~a~~---~~~sn~i~~l~aa~i~~~~~~--------~deAl~~~~~~~------~lE~~Al~VqI~lk  149 (299)
T KOG3081|consen   87 NKKSILASLYELVADS---TDGSNLIDLLLAAIIYMHDGD--------FDEALKALHLGE------NLEAAALNVQILLK  149 (299)
T ss_pred             hhHHHHHHHHHHHHhh---ccchhHHHHHHhhHHhhcCCC--------hHHHHHHHhccc------hHHHHHHHHHHHHH
Confidence            544433 344444443   223333333444556788888        899988876521      23333333455677


Q ss_pred             cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          267 SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE  342 (417)
Q Consensus       267 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  342 (417)
                      ..+++.|.+.++.|.+-    .+..|.+-|..+|.+    .+++.+|.-+|++|-++ ..|+..+.|-...++...|+++
T Consensus       150 ~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~e  224 (299)
T KOG3081|consen  150 MHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYE  224 (299)
T ss_pred             HHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHH
Confidence            88899999999999872    566677777777664    35688999999999764 6788899999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHHCC
Q 014860          343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRA-GEAMKLLKELQNKN  390 (417)
Q Consensus       343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~~  390 (417)
                      +|..++++...+. .-+..|...+|..-...|.. +-..+.+..++...
T Consensus       225 eAe~lL~eaL~kd-~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~  272 (299)
T KOG3081|consen  225 EAESLLEEALDKD-AKDPETLANLIVLALHLGKDAEVTERNLSQLKLSH  272 (299)
T ss_pred             HHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcC
Confidence            9999999988872 23455665555555555544 44556777776655

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.32  E-value=1.1e-06  Score=51.29  Aligned_cols=33  Identities=45%  Similarity=0.839  Sum_probs=19.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS  324 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  324 (417)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            455555555555555555555555555555554

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.31  E-value=1.3e-06  Score=50.95  Aligned_cols=33  Identities=36%  Similarity=0.581  Sum_probs=27.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 014860          327 SYNSLVSALALNGEVEETVKNLWEMIEKQRPVD  359 (417)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  359 (417)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            688888888888888888888888888888876

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.30  E-value=0.003  Score=58.44  Aligned_cols=297  Identities=10%  Similarity=0.015  Sum_probs=167.2

Q ss_pred             HHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860           91 FRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF  169 (417)
Q Consensus        91 ~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  169 (417)
                      +.+++..+|..- .|-.-+..=-.-|+...|.++|..-. .  ..|+...|.+.|+.=.+-+.++.|..+++...-..  
T Consensus       130 ~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~-~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H--  204 (677)
T KOG1915|consen  130 WDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM-E--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH--  204 (677)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH-c--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec--
Confidence            556666666542 22222222234567777777776443 2  25777777777777777777777777777765533  


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCC--------------------------------C-CCCCC--HHHH
Q 014860          170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRN--------------------------------L-ECRPS--IRSY  214 (417)
Q Consensus       170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--------------------------------~-g~~p~--~~~~  214 (417)
                       |++..|--..+.=-++|.+..|..+|+...+.-.                                + .++-+  ...|
T Consensus       205 -P~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~  283 (677)
T KOG1915|consen  205 -PKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELY  283 (677)
T ss_pred             -ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHH
Confidence             6666666666666666666666666665554300                                0 01111  1223


Q ss_pred             HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH--H
Q 014860          215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF--S  292 (417)
Q Consensus       215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~--~  292 (417)
                      .....-=-+-|+...++.....+-.--|+.+.+.+ +.|-.+|--.+..--..|+.+...++|+....  +++|-..  -
T Consensus       284 k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIa--nvpp~~ekr~  360 (677)
T KOG1915|consen  284 KKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIA--NVPPASEKRY  360 (677)
T ss_pred             HHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHc--cCCchhHHHH
Confidence            23322223344433333222233233344454443 45667777778777788999999999998875  5655321  1


Q ss_pred             HHHHHHH--------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHcCCCCCH
Q 014860          293 YDYLIHG--------LCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALA----LNGEVEETVKNLWEMIEKQRPVDF  360 (417)
Q Consensus       293 ~~~li~~--------~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~  360 (417)
                      |.--|..        =....+.+.+.++++...+. ++....||.-+--.|+    ++.++..|.+++...+  |.-|-.
T Consensus       361 W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~  437 (677)
T KOG1915|consen  361 WRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKD  437 (677)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCch
Confidence            2222211        12456777777888777662 3333445544433333    4566666766666544  445666


Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHH
Q 014860          361 ITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTK  399 (417)
Q Consensus       361 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~  399 (417)
                      .+|...|..=.+.++++.+..++++.+.-+.-+-.+|..
T Consensus       438 KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k  476 (677)
T KOG1915|consen  438 KLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK  476 (677)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence            667666666666677777777777766665434444443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.27  E-value=1.6e-06  Score=50.34  Aligned_cols=32  Identities=28%  Similarity=0.357  Sum_probs=14.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 014860          327 SYNSLVSALALNGEVEETVKNLWEMIEKQRPV  358 (417)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  358 (417)
                      +|+++|.+|++.|+++.|.++|++|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            44444444444444444444444444444443

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.26  E-value=0.0021  Score=55.07  Aligned_cols=137  Identities=13%  Similarity=0.191  Sum_probs=68.9

Q ss_pred             HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860          180 IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS  259 (417)
Q Consensus       180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  259 (417)
                      ...|++.|++++|++......         +......=+..+.+..+        .+-|.+.+++|.+.   -+..|.+-
T Consensus       115 a~i~~~~~~~deAl~~~~~~~---------~lE~~Al~VqI~lk~~r--------~d~A~~~lk~mq~i---ded~tLtQ  174 (299)
T KOG3081|consen  115 AIIYMHDGDFDEALKALHLGE---------NLEAAALNVQILLKMHR--------FDLAEKELKKMQQI---DEDATLTQ  174 (299)
T ss_pred             hHHhhcCCChHHHHHHHhccc---------hHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHcc---chHHHHHH
Confidence            344555666666666555521         22333333333444444        55666666666543   23444444


Q ss_pred             HHHHHHh----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860          260 MIKGYIL----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSAL  335 (417)
Q Consensus       260 li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~  335 (417)
                      |..+|.+    .+.+.+|.-+|++|.+  ...|+..+.+-...++...|++++|+.++++...+..+ +..+...+|.+-
T Consensus       175 LA~awv~la~ggek~qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a  251 (299)
T KOG3081|consen  175 LAQAWVKLATGGEKIQDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLA  251 (299)
T ss_pred             HHHHHHHHhccchhhhhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHH
Confidence            4444443    3345566666666653  34455566666666666666666666666666555333 344444444333


Q ss_pred             HhcC
Q 014860          336 ALNG  339 (417)
Q Consensus       336 ~~~g  339 (417)
                      ...|
T Consensus       252 ~~~G  255 (299)
T KOG3081|consen  252 LHLG  255 (299)
T ss_pred             HHhC
Confidence            3333

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.25  E-value=0.0018  Score=68.70  Aligned_cols=272  Identities=11%  Similarity=0.020  Sum_probs=176.5

Q ss_pred             HhccCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHcCCCC----CCCHHHHHHHHHH
Q 014860          111 MTLQEDPLVCLELFNWASKQPRFRHDA----STYHIMTRKLGAAKMYQEMDDVVNQMLATPSF----CGTEALYNTIIYF  182 (417)
Q Consensus       111 l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~----~~~~~~~~~li~~  182 (417)
                      +...|+++.|...++....... ..+.    ...+.+...+...|++++|...+.+.......    .........+...
T Consensus       462 ~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~  540 (903)
T PRK04841        462 AINDGDPEEAERLAELALAELP-LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI  540 (903)
T ss_pred             HHhCCCHHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence            4578999999999998754221 1121    23455556677899999999998888753211    0122355566778


Q ss_pred             HHHhCCHHHHHHHHHHhHhCCC-CCCC--C-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC--CCCC--CH
Q 014860          183 FAEARKLSRAVYVFKYMKNSRN-LECR--P-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND--GIEP--DI  254 (417)
Q Consensus       183 ~~~~g~~~~a~~~~~~m~~~~~-~g~~--p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~--g~~p--~~  254 (417)
                      +...|++++|...+++...... .+..  + ....+..+...+...|+        +++|...+++....  ...+  ..
T Consensus       541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~--------~~~A~~~~~~al~~~~~~~~~~~~  612 (903)
T PRK04841        541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWAR--------LDEAEQCARKGLEVLSNYQPQQQL  612 (903)
T ss_pred             HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHhHHhhhccCchHHH
Confidence            8899999999999887655310 0111  1 23345556666777899        99999998887642  1112  23


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HH
Q 014860          255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY-----DYLIHGLCAQGRTKNARELCDEMKRKGFVPS---SK  326 (417)
Q Consensus       255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~  326 (417)
                      ..+..+...+...|+.+.|.+.++.......-......+     ...+..+...|+.+.|..++...........   ..
T Consensus       613 ~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~  692 (903)
T PRK04841        613 QCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQG  692 (903)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHH
Confidence            344445667788999999999998875421111111111     1123445668999999999877654321111   11


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860          327 SYNSLVSALALNGEVEETVKNLWEMIEK----QRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  391 (417)
                      .+..+..++...|+.++|...+++....    |..++. .+...+..++.+.|+.++|...+.+..+..-
T Consensus       693 ~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~  762 (903)
T PRK04841        693 QWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLAN  762 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhC
Confidence            2456677888999999999999987764    333322 3556666788899999999999999887643

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.25  E-value=4.6e-05  Score=61.01  Aligned_cols=111  Identities=9%  Similarity=-0.046  Sum_probs=95.9

Q ss_pred             CChhHHHHHHhcCCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860           86 LDDTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA  165 (417)
Q Consensus        86 ~~~~~~~~~l~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  165 (417)
                      .-+..+.+.+..-|+.  +......+...|++++|+..|+.+....  +.+...|..+..++...|++++|...++...+
T Consensus        11 ~~~~~~~~al~~~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~   86 (144)
T PRK15359         11 IPEDILKQLLSVDPET--VYASGYASWQEGDYSRAVIDFSWLVMAQ--PWSWRAHIALAGTWMMLKEYTTAINFYGHALM   86 (144)
T ss_pred             CHHHHHHHHHHcCHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            3456677777777764  5556777889999999999999997655  66899999999999999999999999999998


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860          166 TPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       166 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      ...  .+...+..+..++.+.|++++|+..|+...+.
T Consensus        87 l~p--~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~  121 (144)
T PRK15359         87 LDA--SHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM  121 (144)
T ss_pred             cCC--CCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            765  68899999999999999999999999999875

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.24  E-value=0.00064  Score=68.33  Aligned_cols=235  Identities=10%  Similarity=0.034  Sum_probs=162.0

Q ss_pred             CHHHHHHHHHHHHccCChhHH-HHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860          136 DASTYHIMTRKLGAAKMYQEM-DDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY  214 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a-~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~  214 (417)
                      ++.....+=.+++..|.-++| .+++.+..+             ++...++.....+++.-......    .+..+...+
T Consensus        27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~   89 (694)
T PRK15179         27 GPTILDLLEAALAEPGESEEAGRELLQQARQ-------------VLERHAAVHKPAAALPELLDYVR----RYPHTELFQ   89 (694)
T ss_pred             CcHHHhHHHHHhcCcccchhHHHHHHHHHHH-------------HHHHhhhhcchHhhHHHHHHHHH----hccccHHHH
Confidence            333344444456666666665 455555543             23333333333344433333333    245568899


Q ss_pred             HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH
Q 014860          215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD-IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY  293 (417)
Q Consensus       215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  293 (417)
                      -.|.....+.|.        .++|+.+++...+.  .|| ......+...+.+.+++++|+..+++...  .-+-+....
T Consensus        90 ~~La~i~~~~g~--------~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~  157 (694)
T PRK15179         90 VLVARALEAAHR--------SDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREI  157 (694)
T ss_pred             HHHHHHHHHcCC--------cHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHH
Confidence            999999999999        99999999999987  455 55667788899999999999999999875  223456667


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860          294 DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR  373 (417)
Q Consensus       294 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  373 (417)
                      ..+-.++...|++++|.++|++....+ .-+..++..+-.++-..|+.++|...|+...+. ..+-...|+.++      
T Consensus       158 ~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~------  229 (694)
T PRK15179        158 LLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL------  229 (694)
T ss_pred             HHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH------
Confidence            777888999999999999999999843 235788999999999999999999999999876 334445555443      


Q ss_pred             CCHhHHHHHHHHHHHCCCC-----ChhhHHHHHHHHHhh
Q 014860          374 GRAGEAMKLLKELQNKNLI-----DGYTYTKLLDVLEDD  407 (417)
Q Consensus       374 g~~~~A~~~~~~m~~~~~p-----~~~t~~~ll~~~~~~  407 (417)
                      ++...-..+++++.-.+.+     ........|.-+.+.
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (694)
T PRK15179        230 VDLNADLAALRRLGVEGDGRDVPVSILVLEKMLQEIGRR  268 (694)
T ss_pred             HHHHHHHHHHHHcCcccccCCCceeeeeHHHHHHHHhhc
Confidence            3445556677777666552     333444455444433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.23  E-value=0.00075  Score=57.62  Aligned_cols=153  Identities=13%  Similarity=0.042  Sum_probs=77.9

Q ss_pred             HhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHH
Q 014860          111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLS  190 (417)
Q Consensus       111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~  190 (417)
                      +...|+.+..+.+........  +.|....+..+....+.|++.+|...+.+......  +|..+|+.+.-+|.+.|+.+
T Consensus        76 ~~~~G~a~~~l~~~~~~~~~~--~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p--~d~~~~~~lgaaldq~Gr~~  151 (257)
T COG5010          76 LYLRGDADSSLAVLQKSAIAY--PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP--TDWEAWNLLGAALDQLGRFD  151 (257)
T ss_pred             HHhcccccchHHHHhhhhccC--cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC--CChhhhhHHHHHHHHccChh
Confidence            334444444444444332111  33444444555555555555555555555554433  55555555555555555555


Q ss_pred             HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860          191 RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHV  270 (417)
Q Consensus       191 ~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  270 (417)
                      .|..-|.+..+-    ..-+....|.|.-.+.-.|+        .+.|..++......+ .-|..+-..+.......|++
T Consensus       152 ~Ar~ay~qAl~L----~~~~p~~~nNlgms~~L~gd--------~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~  218 (257)
T COG5010         152 EARRAYRQALEL----APNEPSIANNLGMSLLLRGD--------LEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDF  218 (257)
T ss_pred             HHHHHHHHHHHh----ccCCchhhhhHHHHHHHcCC--------HHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCCh
Confidence            555555555543    12233445555555555555        555555555555443 22444445555555555555


Q ss_pred             HHHHHHHHHh
Q 014860          271 NDALRIFHQM  280 (417)
Q Consensus       271 ~~a~~~~~~m  280 (417)
                      +.|+++...-
T Consensus       219 ~~A~~i~~~e  228 (257)
T COG5010         219 REAEDIAVQE  228 (257)
T ss_pred             HHHHhhcccc
Confidence            5555555443

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.23  E-value=2e-06  Score=49.89  Aligned_cols=33  Identities=33%  Similarity=0.581  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014860          291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP  323 (417)
Q Consensus       291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  323 (417)
                      .+|+.+|.+|++.|+++.|.++|++|++.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777665

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=0.00095  Score=59.34  Aligned_cols=56  Identities=9%  Similarity=-0.024  Sum_probs=39.0

Q ss_pred             HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860          108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA  165 (417)
Q Consensus       108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  165 (417)
                      ...+-+-|++++|+..|..+....  .++.+.+..+.-...-.|.+.+|.++-....+
T Consensus        64 a~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k  119 (557)
T KOG3785|consen   64 AHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKSIAEKAPK  119 (557)
T ss_pred             HHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHHHHhhCCC
Confidence            334467899999999999886544  56667666666666667777777776555443

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.22  E-value=0.0047  Score=57.20  Aligned_cols=259  Identities=11%  Similarity=0.056  Sum_probs=189.5

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA  192 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a  192 (417)
                      .+++...|..+|+.+....  .-+...|-.-+.+=.++..+..|..+++..+..-+. . ...|-..+.+=-..|++..|
T Consensus        85 sq~e~~RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPR-V-dqlWyKY~ymEE~LgNi~ga  160 (677)
T KOG1915|consen   85 SQKEIQRARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPR-V-DQLWYKYIYMEEMLGNIAGA  160 (677)
T ss_pred             hHHHHHHHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcch-H-HHHHHHHHHHHHHhcccHHH
Confidence            4667888999999886433  456666777777778999999999999999886543 2 35666777777788999999


Q ss_pred             HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860          193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVND  272 (417)
Q Consensus       193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  272 (417)
                      .++|+.-.+.     .|+...|++.|.-=.+-..        ++.|..+|+...-.  .|++.+|--...-=-++|....
T Consensus       161 RqiferW~~w-----~P~eqaW~sfI~fElRyke--------ieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~~~  225 (677)
T KOG1915|consen  161 RQIFERWMEW-----EPDEQAWLSFIKFELRYKE--------IERARSIYERFVLV--HPKVSNWIKYARFEEKHGNVAL  225 (677)
T ss_pred             HHHHHHHHcC-----CCcHHHHHHHHHHHHHhhH--------HHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcHHH
Confidence            9999999875     8999999999999999999        99999999998865  5999999888888889999999


Q ss_pred             HHHHHHHhhhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHH---HHHH
Q 014860          273 ALRIFHQMGVVYNYL-PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS--SKSYNSLVSALALNGEVE---ETVK  346 (417)
Q Consensus       273 a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~---~A~~  346 (417)
                      |..+|....+..|-. -+...|.+...-=.++..++.|.-+|+-..+. ++-+  ...|..+..---+-|+..   ++.-
T Consensus       226 aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv  304 (677)
T KOG1915|consen  226 ARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIV  304 (677)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHh
Confidence            999999887633221 22334444444445667788888888877765 3323  344555544444445533   3322


Q ss_pred             -----HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 014860          347 -----NLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI  392 (417)
Q Consensus       347 -----~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p  392 (417)
                           -++.+.+. -+.|-.+|--.++.-...|+.+...++|++.+..-.|
T Consensus       305 ~KRk~qYE~~v~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp  354 (677)
T KOG1915|consen  305 GKRKFQYEKEVSK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPP  354 (677)
T ss_pred             hhhhhHHHHHHHh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCc
Confidence                 12333333 2456667777777778889999999999998876444

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.21  E-value=5.7e-05  Score=55.69  Aligned_cols=89  Identities=11%  Similarity=0.171  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCC-CCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860          175 LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLEC-RPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD  253 (417)
Q Consensus       175 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~-~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~  253 (417)
                      +-...|.-+...+++...-.+|+.+++.   |+ .|++.+|+.++.+.++..-.+..-...+-.++.+|++|...+++|+
T Consensus        27 t~i~~I~~~~~~~d~N~I~~lYqslkRN---~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~  103 (120)
T PF08579_consen   27 TQIDNINSCFENEDYNIINPLYQSLKRN---GITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPN  103 (120)
T ss_pred             HHHHHHHHHHhhcchHHHHHHHHHHHhc---CCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCc
Confidence            4445666677779999999999999998   89 9999999999999998775433222236788899999999999999


Q ss_pred             HHHHHHHHHHHHh
Q 014860          254 IFSLNSMIKGYIL  266 (417)
Q Consensus       254 ~~~~~~li~~~~~  266 (417)
                      ..||+.++..+.+
T Consensus       104 ~etYnivl~~Llk  116 (120)
T PF08579_consen  104 DETYNIVLGSLLK  116 (120)
T ss_pred             HHHHHHHHHHHHH
Confidence            9999999988765

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.20  E-value=0.00094  Score=56.56  Aligned_cols=164  Identities=11%  Similarity=0.099  Sum_probs=116.0

Q ss_pred             HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHH
Q 014860          217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYL  296 (417)
Q Consensus       217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  296 (417)
                      -+..|...|+        ++.+....+.+..    |. .       .+...++.+++...++...+  .-+.|...|..+
T Consensus        22 ~~~~Y~~~g~--------~~~v~~~~~~~~~----~~-~-------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~L   79 (198)
T PRK10370         22 CVGSYLLSPK--------WQAVRAEYQRLAD----PL-H-------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALL   79 (198)
T ss_pred             HHHHHHHcch--------HHHHHHHHHHHhC----cc-c-------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHH
Confidence            4456788888        7666444332221    11 0       12225566677766666554  224678889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860          297 IHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSAL-ALNGE--VEETVKNLWEMIEKQRPVDFITYRTVLDEICRR  373 (417)
Q Consensus       297 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~-~~~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  373 (417)
                      ...|...|++++|...|++..+.... +...+..+..++ ...|+  .++|.+++++..+.. +-+...+..+...+.+.
T Consensus        80 g~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~d-P~~~~al~~LA~~~~~~  157 (198)
T PRK10370         80 GEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTREMIDKALALD-ANEVTALMLLASDAFMQ  157 (198)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHc
Confidence            99999999999999999998876433 677777777764 67677  589999999998862 33667788888889999


Q ss_pred             CCHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860          374 GRAGEAMKLLKELQNKNLIDGYTYTKLLDVLE  405 (417)
Q Consensus       374 g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~  405 (417)
                      |++++|...++++.+...|+..-+..+ ++..
T Consensus       158 g~~~~Ai~~~~~aL~l~~~~~~r~~~i-~~i~  188 (198)
T PRK10370        158 ADYAQAIELWQKVLDLNSPRVNRTQLV-ESIN  188 (198)
T ss_pred             CCHHHHHHHHHHHHhhCCCCccHHHHH-HHHH
Confidence            999999999999998877755444433 6544

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.19  E-value=0.00023  Score=67.03  Aligned_cols=221  Identities=13%  Similarity=0.051  Sum_probs=170.5

Q ss_pred             HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcC
Q 014860          147 LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRG  225 (417)
Q Consensus       147 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g  225 (417)
                      +.+.|++.+|.-.|+..++..+  .+...|..|.......++-..|+..+++..+-     .| +....-.|.-.|...|
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP--~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L-----dP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDP--QHAEAWQKLGITQAENENEQNAISALRRCLEL-----DPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhCh--HHHHHHHHhhhHhhhccchHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhh
Confidence            4588889999999999988875  67889999999999999999999999998875     44 4666777888888888


Q ss_pred             CccchhhhhHHHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHH
Q 014860          226 KNTYINHVYMETIRCLFKQMVNDGIE--------PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLI  297 (417)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~~m~~~g~~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li  297 (417)
                      .        -..|+++++.-.....+        ++...-+.  ..+.....+....++|-++....+..+|...+..|-
T Consensus       368 ~--------q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LG  437 (579)
T KOG1125|consen  368 L--------QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLG  437 (579)
T ss_pred             h--------HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhH
Confidence            7        78888888776543211        00000000  223333445667777777766567667888888888


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCH
Q 014860          298 HGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF-ITYRTVLDEICRRGRA  376 (417)
Q Consensus       298 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~  376 (417)
                      -.|--.|++++|.+.|+........ |..+||-|-..++...+.++|+..|.+.++.  +|+- .....|.-.|...|.+
T Consensus       438 VLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~y  514 (579)
T KOG1125|consen  438 VLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAY  514 (579)
T ss_pred             HHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhH
Confidence            8899999999999999999886433 6889999999999999999999999999875  5654 3556677789999999


Q ss_pred             hHHHHHHHHHH
Q 014860          377 GEAMKLLKELQ  387 (417)
Q Consensus       377 ~~A~~~~~~m~  387 (417)
                      ++|.+.|-+.+
T Consensus       515 kEA~~hlL~AL  525 (579)
T KOG1125|consen  515 KEAVKHLLEAL  525 (579)
T ss_pred             HHHHHHHHHHH
Confidence            99999877643

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.18  E-value=0.00014  Score=61.62  Aligned_cols=128  Identities=9%  Similarity=0.114  Sum_probs=105.6

Q ss_pred             cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHHhCC--HH
Q 014860          114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF-FAEARK--LS  190 (417)
Q Consensus       114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~--~~  190 (417)
                      .++.++++..++...+..  +.|...|..+...+...|++++|...++...+..+  .+...+..+..+ +...|+  .+
T Consensus        52 ~~~~~~~i~~l~~~L~~~--P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P--~~~~~~~~lA~aL~~~~g~~~~~  127 (198)
T PRK10370         52 QQTPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG--ENAELYAALATVLYYQAGQHMTP  127 (198)
T ss_pred             chhHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCCCcH
Confidence            456677887787776555  67899999999999999999999999999999875  678888888886 467777  59


Q ss_pred             HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          191 RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN  258 (417)
Q Consensus       191 ~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  258 (417)
                      +|.+++++..+..    +-+..++..+...+...|+        +++|+..|+++.+.. +|+..-+.
T Consensus       128 ~A~~~l~~al~~d----P~~~~al~~LA~~~~~~g~--------~~~Ai~~~~~aL~l~-~~~~~r~~  182 (198)
T PRK10370        128 QTREMIDKALALD----ANEVTALMLLASDAFMQAD--------YAQAIELWQKVLDLN-SPRVNRTQ  182 (198)
T ss_pred             HHHHHHHHHHHhC----CCChhHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhC-CCCccHHH
Confidence            9999999999862    4467889999999999999        999999999998875 45554443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.18  E-value=0.00036  Score=61.91  Aligned_cols=222  Identities=11%  Similarity=0.056  Sum_probs=124.7

Q ss_pred             ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH-----HHhCCHH
Q 014860          116 DPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF-----AEARKLS  190 (417)
Q Consensus       116 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~-----~~~g~~~  190 (417)
                      +-+.|++++--+.     +.-+++-..++-.+.+.+++++|..+..++.   +..|-....-.++.+-     .....+.
T Consensus       269 ngEgALqVLP~L~-----~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~---PttP~EyilKgvv~aalGQe~gSreHlK  340 (557)
T KOG3785|consen  269 NGEGALQVLPSLM-----KHIPEARLNLIIYYLNQNDVQEAISLCKDLD---PTTPYEYILKGVVFAALGQETGSREHLK  340 (557)
T ss_pred             CCccHHHhchHHH-----hhChHhhhhheeeecccccHHHHHHHHhhcC---CCChHHHHHHHHHHHHhhhhcCcHHHHH
Confidence            3445555554443     1223344445556677888888777765542   2113333322222211     1112255


Q ss_pred             HHHHHHHHhHhCCCCCCCCCHH-HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860          191 RAVYVFKYMKNSRNLECRPSIR-SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH  269 (417)
Q Consensus       191 ~a~~~~~~m~~~~~~g~~p~~~-~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  269 (417)
                      -|.+.|+-.-+.   +..-|+. .-..+.+.+.-..+        .|+++-.++..+.-=..-|..-+| +..+++..|.
T Consensus       341 iAqqffqlVG~S---a~ecDTIpGRQsmAs~fFL~~q--------FddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgn  408 (557)
T KOG3785|consen  341 IAQQFFQLVGES---ALECDTIPGRQSMASYFFLSFQ--------FDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGN  408 (557)
T ss_pred             HHHHHHHHhccc---ccccccccchHHHHHHHHHHHH--------HHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcC
Confidence            566666655544   4443332 23345555555555        777777777666543333444443 6677888888


Q ss_pred             HHHHHHHHHHhhhhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHHHH
Q 014860          270 VNDALRIFHQMGVVYNYLPNSFSYD-YLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS-YNSLVSALALNGEVEETVKN  347 (417)
Q Consensus       270 ~~~a~~~~~~m~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~~~  347 (417)
                      +.+|+++|-.+.. ..+ .|..+|. .|..+|.++++++.|++++-.+...+   +..+ ...+..-|.+++++--|-+.
T Consensus       409 y~eaEelf~~is~-~~i-kn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~---e~fsLLqlIAn~CYk~~eFyyaaKA  483 (557)
T KOG3785|consen  409 YVEAEELFIRISG-PEI-KNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPS---ERFSLLQLIANDCYKANEFYYAAKA  483 (557)
T ss_pred             hHHHHHHHhhhcC-hhh-hhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCch---hHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8888888877754 233 3444554 45567788888888887776655322   2222 23344667778888777777


Q ss_pred             HHHHHHcCCCCCHHHHH
Q 014860          348 LWEMIEKQRPVDFITYR  364 (417)
Q Consensus       348 ~~~m~~~g~~p~~~~~~  364 (417)
                      |+++...  .|++..|.
T Consensus       484 Fd~lE~l--DP~pEnWe  498 (557)
T KOG3785|consen  484 FDELEIL--DPTPENWE  498 (557)
T ss_pred             hhHHHcc--CCCccccC
Confidence            8777654  56666663

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.17  E-value=0.00063  Score=68.37  Aligned_cols=161  Identities=9%  Similarity=-0.014  Sum_probs=123.3

Q ss_pred             hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 014860          117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVF  196 (417)
Q Consensus       117 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  196 (417)
                      +..++.-.....++  +..+...+-.|..+..+.|.+++|..+++...+..+  .+......+...+.+.+++++|+..+
T Consensus        68 ~~~~~~~~~~~~~~--~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P--d~~~a~~~~a~~L~~~~~~eeA~~~~  143 (694)
T PRK15179         68 PAAALPELLDYVRR--YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP--DSSEAFILMLRGVKRQQGIEAGRAEI  143 (694)
T ss_pred             hHhhHHHHHHHHHh--ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC--CcHHHHHHHHHHHHHhccHHHHHHHH
Confidence            44444433333333  366788899999999999999999999999988764  56778888889999999999999999


Q ss_pred             HHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014860          197 KYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRI  276 (417)
Q Consensus       197 ~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~  276 (417)
                      ++....    -+-+....+.+-.++.+.|+        +++|.++|++....+ +-+..++..+-.++...|+.++|...
T Consensus       144 ~~~l~~----~p~~~~~~~~~a~~l~~~g~--------~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~  210 (694)
T PRK15179        144 ELYFSG----GSSSAREILLEAKSWDEIGQ--------SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDV  210 (694)
T ss_pred             HHHhhc----CCCCHHHHHHHHHHHHHhcc--------hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999875    23456667788888899999        999999999998743 34478888888889999999999999


Q ss_pred             HHHhhhhCCCCCCHHHHHHH
Q 014860          277 FHQMGVVYNYLPNSFSYDYL  296 (417)
Q Consensus       277 ~~~m~~~~~~~~~~~~~~~l  296 (417)
                      |+...+..  .+....|+..
T Consensus       211 ~~~a~~~~--~~~~~~~~~~  228 (694)
T PRK15179        211 LQAGLDAI--GDGARKLTRR  228 (694)
T ss_pred             HHHHHHhh--CcchHHHHHH
Confidence            99886522  2444554443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.16  E-value=0.0048  Score=58.66  Aligned_cols=283  Identities=15%  Similarity=0.124  Sum_probs=164.2

Q ss_pred             HHHHh--ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC---------------
Q 014860          108 CNVMT--LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC---------------  170 (417)
Q Consensus       108 l~~l~--~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---------------  170 (417)
                      -.+||  +.+..++|+..++-..     +.|..+...-...+-+.|++++|.++|+.+.+.+...               
T Consensus        84 EKAYc~Yrlnk~Dealk~~~~~~-----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~  158 (652)
T KOG2376|consen   84 EKAYCEYRLNKLDEALKTLKGLD-----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA  158 (652)
T ss_pred             HHHHHHHHcccHHHHHHHHhccc-----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh
Confidence            44554  5566777777776331     2344455555566667777777777777775533210               


Q ss_pred             -----------CCHHHHHHH---HHHHHHhCCHHHHHHHHHHhHhC-------CCC---CCCCCHHH-HHHHHHHHHhcC
Q 014860          171 -----------GTEALYNTI---IYFFAEARKLSRAVYVFKYMKNS-------RNL---ECRPSIRS-YNILFTAFLSRG  225 (417)
Q Consensus       171 -----------~~~~~~~~l---i~~~~~~g~~~~a~~~~~~m~~~-------~~~---g~~p~~~~-~~~li~~~~~~g  225 (417)
                                 ....+|..+   ...+...|++.+|+++++...+.       ++.   ++.-+..+ ---|.-.+-..|
T Consensus       159 l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~G  238 (652)
T KOG2376|consen  159 LQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQG  238 (652)
T ss_pred             hhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhc
Confidence                       011233333   34566789999999999988221       000   11111111 122445567788


Q ss_pred             CccchhhhhHHHHHHHHHHHHHCCCCCCHHHH------------------------------------------------
Q 014860          226 KNTYINHVYMETIRCLFKQMVNDGIEPDIFSL------------------------------------------------  257 (417)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~------------------------------------------------  257 (417)
                      +        .++|.+++....+.. .+|....                                                
T Consensus       239 q--------t~ea~~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i  309 (652)
T KOG2376|consen  239 Q--------TAEASSIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAI  309 (652)
T ss_pred             c--------hHHHHHHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            8        888988888888765 3333211                                                


Q ss_pred             ---HHHHHHHHh--------------------------------cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh
Q 014860          258 ---NSMIKGYIL--------------------------------SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA  302 (417)
Q Consensus       258 ---~~li~~~~~--------------------------------~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~  302 (417)
                         +.++..|..                                ...+..+.+++....+ ..-......--.++.....
T Consensus       310 ~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~-~~p~~s~~v~L~~aQl~is  388 (652)
T KOG2376|consen  310 YRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD-GHPEKSKVVLLLRAQLKIS  388 (652)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-cCCchhHHHHHHHHHHHHh
Confidence               111111111                                0112333333333332 1111123344556666778


Q ss_pred             cCCHHHHHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHH----H
Q 014860          303 QGRTKNARELCD--------EMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK--QRPVDFITYRTVL----D  368 (417)
Q Consensus       303 ~g~~~~A~~l~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li----~  368 (417)
                      .|+++.|.+++.        .+.+.+..|  .+..+++..+.+.++.+.|..++++....  .-.+......+++    .
T Consensus       389 ~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~  466 (652)
T KOG2376|consen  389 QGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAE  466 (652)
T ss_pred             cCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhH
Confidence            899999998888        444444444  45566777777888777777777766553  1112222333333    3


Q ss_pred             HHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          369 EICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       369 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                      --.+.|+.++|..+++++.+.+.+|..+...++.+|+..
T Consensus       467 f~lr~G~~~ea~s~leel~k~n~~d~~~l~~lV~a~~~~  505 (652)
T KOG2376|consen  467 FKLRHGNEEEASSLLEELVKFNPNDTDLLVQLVTAYARL  505 (652)
T ss_pred             HHHhcCchHHHHHHHHHHHHhCCchHHHHHHHHHHHHhc
Confidence            335779999999999999998888999999999999865

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.14  E-value=0.00041  Score=55.48  Aligned_cols=93  Identities=9%  Similarity=-0.129  Sum_probs=45.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860          296 LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR  375 (417)
Q Consensus       296 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  375 (417)
                      +...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+. .+.+...+..+..++...|+
T Consensus        30 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l-~p~~~~a~~~lg~~l~~~g~  107 (144)
T PRK15359         30 SGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALML-DASHPEPVYQTGVCLKMMGE  107 (144)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CCCCcHHHHHHHHHHHHcCC
Confidence            3444445555555555555544432 124444555555555555555555555555543 12234444455555555555


Q ss_pred             HhHHHHHHHHHHHCC
Q 014860          376 AGEAMKLLKELQNKN  390 (417)
Q Consensus       376 ~~~A~~~~~~m~~~~  390 (417)
                      .++|...|+......
T Consensus       108 ~~eAi~~~~~Al~~~  122 (144)
T PRK15359        108 PGLAREAFQTAIKMS  122 (144)
T ss_pred             HHHHHHHHHHHHHhC
Confidence            555555555554443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=0.00065  Score=58.99  Aligned_cols=238  Identities=11%  Similarity=0.143  Sum_probs=170.2

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH-H
Q 014860          139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI-L  217 (417)
Q Consensus       139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~-l  217 (417)
                      -+..++..+.+..+++.|.+++..-.+...  .+....+.|..+|....++..|-..|+++...     -|...-|.. -
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~p--~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql-----~P~~~qYrlY~   84 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERSP--RSRAGLSLLGYCYYRLQEFALAAECYEQLGQL-----HPELEQYRLYQ   84 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-----ChHHHHHHHHH
Confidence            356677777888899999999888777654  47788889999999999999999999999875     566665554 2


Q ss_pred             HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 014860          218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGY--ILSNHVNDALRIFHQMGVVYNYLPNSFSYDY  295 (417)
Q Consensus       218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~  295 (417)
                      ...+-+.+.        +..|+.+...|.+.   ++...-..-+.+.  ...+++-.+..++++...    ..+..+.+.
T Consensus        85 AQSLY~A~i--------~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~----en~Ad~~in  149 (459)
T KOG4340|consen   85 AQSLYKACI--------YADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPS----ENEADGQIN  149 (459)
T ss_pred             HHHHHHhcc--------cHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccC----CCccchhcc
Confidence            345666777        88899998888753   2322222222222  346788888888888763    134444444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-------------CCHH
Q 014860          296 LIHGLCAQGRTKNARELCDEMKRK-GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRP-------------VDFI  361 (417)
Q Consensus       296 li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-------------p~~~  361 (417)
                      .-....+.|+++.|.+-|....+- |.. ....||..+.-| +.|+.+.|+++..+++++|++             ||+.
T Consensus       150 ~gCllykegqyEaAvqkFqaAlqvsGyq-pllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr  227 (459)
T KOG4340|consen  150 LGCLLYKEGQYEAAVQKFQAALQVSGYQ-PLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR  227 (459)
T ss_pred             chheeeccccHHHHHHHHHHHHhhcCCC-chhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh
Confidence            444567899999999999988775 555 455788766555 568999999999999988764             2221


Q ss_pred             --------HHHHHHHH-------HHHcCCHhHHHHHHHHHHHCCC--CChhhHHHH
Q 014860          362 --------TYRTVLDE-------ICRRGRAGEAMKLLKELQNKNL--IDGYTYTKL  400 (417)
Q Consensus       362 --------~~~~li~~-------~~~~g~~~~A~~~~~~m~~~~~--p~~~t~~~l  400 (417)
                              .-+.++.+       +.+.|+.+.|.+-+.+|.-+.-  .|+.|...+
T Consensus       228 svgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~  283 (459)
T KOG4340|consen  228 SVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQ  283 (459)
T ss_pred             cccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHH
Confidence                    23445554       3578999999999999987765  477777654

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.12  E-value=0.00026  Score=68.43  Aligned_cols=167  Identities=14%  Similarity=0.158  Sum_probs=105.9

Q ss_pred             HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK  262 (417)
Q Consensus       183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  262 (417)
                      ...++.|.+|+.+++.+...     +.-..-|..+...|...|+        ++.|+++|-+.         ..++--|.
T Consensus       742 ai~akew~kai~ildniqdq-----k~~s~yy~~iadhyan~~d--------fe~ae~lf~e~---------~~~~dai~  799 (1636)
T KOG3616|consen  742 AIGAKEWKKAISILDNIQDQ-----KTASGYYGEIADHYANKGD--------FEIAEELFTEA---------DLFKDAID  799 (1636)
T ss_pred             HhhhhhhhhhHhHHHHhhhh-----ccccccchHHHHHhccchh--------HHHHHHHHHhc---------chhHHHHH
Confidence            34455666777777777665     2233446677778888888        88888887542         24566788


Q ss_pred             HHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          263 GYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE  342 (417)
Q Consensus       263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  342 (417)
                      +|.+.|+|++|.++-.+..   |-......|-+-..-+-..|++.+|++++-.+..    |+.     .|.+|-+.|..+
T Consensus       800 my~k~~kw~da~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~~----p~~-----aiqmydk~~~~d  867 (1636)
T KOG3616|consen  800 MYGKAGKWEDAFKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGE----PDK-----AIQMYDKHGLDD  867 (1636)
T ss_pred             HHhccccHHHHHHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEccC----chH-----HHHHHHhhCcch
Confidence            8888888888888877764   3345566666666667777888888777654432    332     356677777777


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860          343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKEL  386 (417)
Q Consensus       343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  386 (417)
                      +.+++.++-.-.   --..|-..+..-|...|+.+.|.+-|-+.
T Consensus       868 dmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea  908 (1636)
T KOG3616|consen  868 DMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEA  908 (1636)
T ss_pred             HHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence            776665543221   11224445555666677777766655443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.12  E-value=0.0066  Score=58.36  Aligned_cols=278  Identities=11%  Similarity=0.050  Sum_probs=187.2

Q ss_pred             HHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860           91 FRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF  169 (417)
Q Consensus        91 ~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  169 (417)
                      +...|+..|... +.....-.+..-|+-++|.+..+...+..  .-+...|+.+.-.+-...++++|.+.+....+.+. 
T Consensus        30 ~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d--~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~-  106 (700)
T KOG1156|consen   30 IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND--LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEK-  106 (700)
T ss_pred             HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC--cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCC-
Confidence            445555555443 33322333467789999999998876433  56778888888888889999999999999999876 


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860          170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG  249 (417)
Q Consensus       170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g  249 (417)
                       .|...+.-+--.-++.|+++.....-.+..+.    .+.....|.....+..-.|+        ...|..+.++..+..
T Consensus       107 -dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql----~~~~ra~w~~~Avs~~L~g~--------y~~A~~il~ef~~t~  173 (700)
T KOG1156|consen  107 -DNLQILRDLSLLQIQMRDYEGYLETRNQLLQL----RPSQRASWIGFAVAQHLLGE--------YKMALEILEEFEKTQ  173 (700)
T ss_pred             -CcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh----hhhhHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhh
Confidence             68888988888888999998888877777764    13346679999999999999        999999999998755


Q ss_pred             C-CCCHHHHHHHH------HHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014860          250 I-EPDIFSLNSMI------KGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV  322 (417)
Q Consensus       250 ~-~p~~~~~~~li------~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~  322 (417)
                      . .|+...+.-..      ....+.|..+.|.+.+..-+.  .+.-....-..-...+.+.+++++|..++..+...  .
T Consensus       174 ~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~--~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--n  249 (700)
T KOG1156|consen  174 NTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK--QIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLER--N  249 (700)
T ss_pred             ccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--HHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhh--C
Confidence            2 56666664332      234567888888888877654  22222223334556678899999999999999987  4


Q ss_pred             CCHHHHHH-HHHHHHhcCCHHHHH-HHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 014860          323 PSSKSYNS-LVSALALNGEVEETV-KNLWEMIEK---QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI  392 (417)
Q Consensus       323 p~~~~~~~-li~~~~~~g~~~~A~-~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p  392 (417)
                      ||-.-|.- +..++.+-.+.-+++ .+|....+.   .-.|-....+.+ .   ...-.+..-+++..+.++|+|
T Consensus       250 Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl-~---~eel~~~vdkyL~~~l~Kg~p  320 (700)
T KOG1156|consen  250 PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVL-N---GEELKEIVDKYLRPLLSKGVP  320 (700)
T ss_pred             chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHh-C---cchhHHHHHHHHHHHhhcCCC
Confidence            66555544 455554344444444 666665554   111111111111 1   122334455677778888875

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.11  E-value=0.0073  Score=58.07  Aligned_cols=277  Identities=9%  Similarity=0.046  Sum_probs=184.7

Q ss_pred             CCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 014860          101 RFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII  180 (417)
Q Consensus       101 ~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li  180 (417)
                      +..|-.-++.+..+++...-...|+.......+.-....|...+......+..+-+..+++..++.     ++..-+--|
T Consensus       102 pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyi  176 (835)
T KOG2047|consen  102 PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYI  176 (835)
T ss_pred             CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHH
Confidence            446767778888889998889999888777766777788888999999999999999999999885     445578889


Q ss_pred             HHHHHhCCHHHHHHHHHHhHhCCC---CCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC--HH
Q 014860          181 YFFAEARKLSRAVYVFKYMKNSRN---LECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD--IF  255 (417)
Q Consensus       181 ~~~~~~g~~~~a~~~~~~m~~~~~---~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~  255 (417)
                      ..+++.+++++|.+.+........   ..-+.+...|+-+....++..+...     --.+.++++.+...  -+|  ..
T Consensus       177 e~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~-----slnvdaiiR~gi~r--ftDq~g~  249 (835)
T KOG2047|consen  177 EYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQ-----SLNVDAIIRGGIRR--FTDQLGF  249 (835)
T ss_pred             HHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhc-----ccCHHHHHHhhccc--CcHHHHH
Confidence            999999999999999988765421   0124566778888877777665111     12233445555433  244  35


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC----------------------HHHHHHHH
Q 014860          256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR----------------------TKNARELC  313 (417)
Q Consensus       256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~----------------------~~~A~~l~  313 (417)
                      .|.+|.+-|.+.|.++.|..+|++....   ..+..-|+.+.++|+.-..                      ++-.+.-|
T Consensus       250 Lw~SLAdYYIr~g~~ekarDvyeeai~~---v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~  326 (835)
T KOG2047|consen  250 LWCSLADYYIRSGLFEKARDVYEEAIQT---VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF  326 (835)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHh---heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence            7899999999999999999999887652   2444455666666554211                      11222223


Q ss_pred             HHHHHCC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC------CHHHHHHHHHHHHHcCCH
Q 014860          314 DEMKRKG-----------FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPV------DFITYRTVLDEICRRGRA  376 (417)
Q Consensus       314 ~~m~~~g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~  376 (417)
                      +.+...+           -.-++..|..-+.  +..|+..+-...+.+.... +.|      -...|..+.+-|-+.|+.
T Consensus       327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l  403 (835)
T KOG2047|consen  327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDL  403 (835)
T ss_pred             HHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcH
Confidence            3322221           0112333333222  2245666667777777664 222      123577777888889999


Q ss_pred             hHHHHHHHHHHHCCCCChh
Q 014860          377 GEAMKLLKELQNKNLIDGY  395 (417)
Q Consensus       377 ~~A~~~~~~m~~~~~p~~~  395 (417)
                      +.|..+|++-.+..++...
T Consensus       404 ~~aRvifeka~~V~y~~v~  422 (835)
T KOG2047|consen  404 DDARVIFEKATKVPYKTVE  422 (835)
T ss_pred             HHHHHHHHHhhcCCccchH
Confidence            9999999888887765443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.10  E-value=0.0062  Score=60.63  Aligned_cols=223  Identities=14%  Similarity=0.061  Sum_probs=127.2

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHH
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRK--LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLS  190 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~  190 (417)
                      ..+++..|+.....+.++.+-.+    |..++.+  +.+.|+.++|..+++.....+.  .|..|...+-.+|.+.++.+
T Consensus        21 d~~qfkkal~~~~kllkk~Pn~~----~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKHPNAL----YAKVLKALSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhh
Confidence            35667777777777766553222    3333333  3477777777777766655544  47777777777777788888


Q ss_pred             HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 014860          191 RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN--  268 (417)
Q Consensus       191 ~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--  268 (417)
                      +|..+|++....     .|+..-...+..+|++.++        +.+-.+.--+|-+ .++-+.+.+=++++.+...-  
T Consensus        95 ~~~~~Ye~~~~~-----~P~eell~~lFmayvR~~~--------yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~  160 (932)
T KOG2053|consen   95 EAVHLYERANQK-----YPSEELLYHLFMAYVREKS--------YKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFS  160 (932)
T ss_pred             HHHHHHHHHHhh-----CCcHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccC
Confidence            888888777754     5666666677777777766        4433333333322 22334445545555544321  


Q ss_pred             --------CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860          269 --------HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD-EMKRKGFVPSSKSYNSLVSALALNG  339 (417)
Q Consensus       269 --------~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~-~m~~~g~~p~~~~~~~li~~~~~~g  339 (417)
                              -...|.+.++.+.++.|-.-+..-.-.-...+-..|++++|++++. ...+.-..-+...-+.-+..+...+
T Consensus       161 ~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~  240 (932)
T KOG2053|consen  161 ENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLN  240 (932)
T ss_pred             CcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhc
Confidence                    1234556666665533311222222222333455667777777773 3333323334444455666667777


Q ss_pred             CHHHHHHHHHHHHHcC
Q 014860          340 EVEETVKNLWEMIEKQ  355 (417)
Q Consensus       340 ~~~~A~~~~~~m~~~g  355 (417)
                      ++.+..++-.++..+|
T Consensus       241 ~w~~l~~l~~~Ll~k~  256 (932)
T KOG2053|consen  241 RWQELFELSSRLLEKG  256 (932)
T ss_pred             ChHHHHHHHHHHHHhC
Confidence            7777777777777664

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.09  E-value=0.0036  Score=60.06  Aligned_cols=256  Identities=15%  Similarity=0.108  Sum_probs=188.0

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA  192 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a  192 (417)
                      ..+++..-+.+.+.+.+  +++-..++.....-.+...|+-++|.+......+.+.  .+.+.|..+.-.+-...++++|
T Consensus        19 E~kQYkkgLK~~~~iL~--k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~--~S~vCwHv~gl~~R~dK~Y~ea   94 (700)
T KOG1156|consen   19 ETKQYKKGLKLIKQILK--KFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDL--KSHVCWHVLGLLQRSDKKYDEA   94 (700)
T ss_pred             HHHHHHhHHHHHHHHHH--hCCccchhHHhccchhhcccchHHHHHHHHHHhccCc--ccchhHHHHHHHHhhhhhHHHH
Confidence            45678888888888876  3456677777776677889999999999999988765  6788999998888889999999


Q ss_pred             HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860          193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVND  272 (417)
Q Consensus       193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  272 (417)
                      ++.|.......    +.|...|.-+--.=++.|+        ++.......++.+.. +-....|..+..++.-.|+...
T Consensus        95 iKcy~nAl~~~----~dN~qilrDlslLQ~QmRd--------~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~  161 (700)
T KOG1156|consen   95 IKCYRNALKIE----KDNLQILRDLSLLQIQMRD--------YEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKM  161 (700)
T ss_pred             HHHHHHHHhcC----CCcHHHHHHHHHHHHHHHh--------hhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence            99999998762    4567778877777778888        888888888877653 3345677888888889999999


Q ss_pred             HHHHHHHhhhhCCCCCCHHHHHHHHHH------HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014860          273 ALRIFHQMGVVYNYLPNSFSYDYLIHG------LCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVK  346 (417)
Q Consensus       273 a~~~~~~m~~~~~~~~~~~~~~~li~~------~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  346 (417)
                      |..+++...+.....|+...|......      ....|..++|.+.+..-+.. +.-....-..-...+.+.+++++|..
T Consensus       162 A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~-i~Dkla~~e~ka~l~~kl~~lEeA~~  240 (700)
T KOG1156|consen  162 ALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQ-IVDKLAFEETKADLLMKLGQLEEAVK  240 (700)
T ss_pred             HHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhH-HHHHHHHhhhHHHHHHHHhhHHhHHH
Confidence            999999998855456777766544333      45677888888877665543 22122233445567788999999999


Q ss_pred             HHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHhHHH-HHHHHHHH
Q 014860          347 NLWEMIEKQRPVDFITYR-TVLDEICRRGRAGEAM-KLLKELQN  388 (417)
Q Consensus       347 ~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~A~-~~~~~m~~  388 (417)
                      ++..+...  -||..-|. .+..++.+..+.-++. .+|....+
T Consensus       241 ~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~  282 (700)
T KOG1156|consen  241 VYRRLLER--NPDNLDYYEGLEKALGKIKDMLEALKALYAILSE  282 (700)
T ss_pred             HHHHHHhh--CchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence            99999987  46666555 4555555333333444 55555544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.0045  Score=62.40  Aligned_cols=182  Identities=14%  Similarity=0.113  Sum_probs=101.2

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860          172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE  251 (417)
Q Consensus       172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~  251 (417)
                      ...+|+.+..+-.+.|.+.+|++-|-+..         |...|.-++....+.|.        +++..+.+.-.++..-+
T Consensus      1103 ~p~vWsqlakAQL~~~~v~dAieSyikad---------Dps~y~eVi~~a~~~~~--------~edLv~yL~MaRkk~~E 1165 (1666)
T KOG0985|consen 1103 EPAVWSQLAKAQLQGGLVKDAIESYIKAD---------DPSNYLEVIDVASRTGK--------YEDLVKYLLMARKKVRE 1165 (1666)
T ss_pred             ChHHHHHHHHHHHhcCchHHHHHHHHhcC---------CcHHHHHHHHHHHhcCc--------HHHHHHHHHHHHHhhcC
Confidence            34677788888778888887777664432         56677888888888888        88877777666655444


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------------
Q 014860          252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR-------------  318 (417)
Q Consensus       252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-------------  318 (417)
                      |..  =+.||-+|++.+++.+.++++.        .||......+-+-|...|.++.|.-+|...-.             
T Consensus      1166 ~~i--d~eLi~AyAkt~rl~elE~fi~--------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lge 1235 (1666)
T KOG0985|consen 1166 PYI--DSELIFAYAKTNRLTELEEFIA--------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGE 1235 (1666)
T ss_pred             ccc--hHHHHHHHHHhchHHHHHHHhc--------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            443  3467778888877766655442        14444444444444444445444444432110             


Q ss_pred             -------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860          319 -------KGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKE  385 (417)
Q Consensus       319 -------~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  385 (417)
                             ..-.-+..||.-+-.+|...+.+.-|     +|...++.....-..-|+.-|-..|-+++...+++.
T Consensus      1236 yQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1236 YQGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred             HHHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence                   00001334455554454444433322     222222333344455566666666666666555544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.08  E-value=0.0014  Score=62.03  Aligned_cols=26  Identities=19%  Similarity=0.316  Sum_probs=15.5

Q ss_pred             HHHHcCCHhHHHHHHHHHHHCCCCCh
Q 014860          369 EICRRGRAGEAMKLLKELQNKNLIDG  394 (417)
Q Consensus       369 ~~~~~g~~~~A~~~~~~m~~~~~p~~  394 (417)
                      ++-..|+.++|.+++...+..+.+|.
T Consensus       233 VlQ~~Gqt~ea~~iy~~~i~~~~~D~  258 (652)
T KOG2376|consen  233 VLQLQGQTAEASSIYVDIIKRNPADE  258 (652)
T ss_pred             HHHHhcchHHHHHHHHHHHHhcCCCc
Confidence            34456666666666666666655444

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.08  E-value=0.00011  Score=54.27  Aligned_cols=79  Identities=18%  Similarity=0.267  Sum_probs=48.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcC--------CHHHHHHHHHHHHHcCCCCCHHHHH
Q 014860          294 DYLIHGLCAQGRTKNARELCDEMKRKGF-VPSSKSYNSLVSALALNG--------EVEETVKNLWEMIEKQRPVDFITYR  364 (417)
Q Consensus       294 ~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~  364 (417)
                      ...|..+...+++.....+|..++..|+ .|+..+|+.++.+.++..        ++-..+.+++.|...+++|+..||+
T Consensus        29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn  108 (120)
T PF08579_consen   29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN  108 (120)
T ss_pred             HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence            3345555555666666666666666666 666666666666665532        2234566666666666777777777


Q ss_pred             HHHHHHHH
Q 014860          365 TVLDEICR  372 (417)
Q Consensus       365 ~li~~~~~  372 (417)
                      .++..+.+
T Consensus       109 ivl~~Llk  116 (120)
T PF08579_consen  109 IVLGSLLK  116 (120)
T ss_pred             HHHHHHHH
Confidence            66666543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.08  E-value=0.0038  Score=58.08  Aligned_cols=223  Identities=12%  Similarity=0.051  Sum_probs=114.0

Q ss_pred             HHHHhccCC-hhHHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC-CCCHHHHHHHHHHH
Q 014860          108 CNVMTLQED-PLVCLELFNWASK--QPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF-CGTEALYNTIIYFF  183 (417)
Q Consensus       108 l~~l~~~~~-~~~A~~~~~~~~~--~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~li~~~  183 (417)
                      +..+.+.|. +..-.++|+.+..  ..+-+|....    +..=.-..++.+++...+.+...+.. .|+...+...+.+.
T Consensus       209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl----~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~  284 (484)
T COG4783         209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYL----LTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAK  284 (484)
T ss_pred             HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHH----hcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHH
Confidence            344455553 5566677777752  2222222221    11112233444455455555443221 24455555555544


Q ss_pred             HHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860          184 AEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG  263 (417)
Q Consensus       184 ~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  263 (417)
                      .....-..+-.++.+-.+.     .-...-|..-+. +...|+        .++|+..++.+...- +-|..-+....+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~-----~~~aa~YG~A~~-~~~~~~--------~d~A~~~l~~L~~~~-P~N~~~~~~~~~i  349 (484)
T COG4783         285 YEALPNQQAADLLAKRSKR-----GGLAAQYGRALQ-TYLAGQ--------YDEALKLLQPLIAAQ-PDNPYYLELAGDI  349 (484)
T ss_pred             hccccccchHHHHHHHhCc-----cchHHHHHHHHH-HHHhcc--------cchHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            4443333333333222221     011222333333 334455        667777777766542 2334444555666


Q ss_pred             HHhcCCHHHHHHHHHHhhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          264 YILSNHVNDALRIFHQMGVVYNYLPN-SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE  342 (417)
Q Consensus       264 ~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  342 (417)
                      +.+.++..+|.+.++.+...   .|+ ...+-.+-.+|.+.|++.+|..++++..... +-|...|..|..+|...|+..
T Consensus       350 ~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~  425 (484)
T COG4783         350 LLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRA  425 (484)
T ss_pred             HHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchH
Confidence            66777777777777766542   243 4455556666677777777777776666542 335666777777777777766


Q ss_pred             HHHHHHHHHHH
Q 014860          343 ETVKNLWEMIE  353 (417)
Q Consensus       343 ~A~~~~~~m~~  353 (417)
                      ++..-..++..
T Consensus       426 ~a~~A~AE~~~  436 (484)
T COG4783         426 EALLARAEGYA  436 (484)
T ss_pred             HHHHHHHHHHH
Confidence            66665555443

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.07  E-value=0.00032  Score=65.32  Aligned_cols=125  Identities=14%  Similarity=0.112  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860          256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSAL  335 (417)
Q Consensus       256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~  335 (417)
                      ....|+..+...++++.|.++|+++.+. .  |+  ....++..+...++..+|.+++++..+.. +-|......-...|
T Consensus       171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~-~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fL  244 (395)
T PF09295_consen  171 LVDTLLKYLSLTQRYDEAIELLEKLRER-D--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFL  244 (395)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHhc-C--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            3355666677789999999999999873 2  55  45567888888899999999999998653 33677778788889


Q ss_pred             HhcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          336 ALNGEVEETVKNLWEMIEKQRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       336 ~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      .+.++.+.|+++.+++.+.  .|+. .+|..|..+|...|+++.|+..++.+.-
T Consensus       245 l~k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  245 LSKKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             HhcCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            9999999999999999985  5655 5999999999999999999999998763

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.05  E-value=0.0032  Score=64.28  Aligned_cols=217  Identities=10%  Similarity=0.067  Sum_probs=143.2

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHH------------------HHHHH
Q 014860          103 NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDV------------------VNQML  164 (417)
Q Consensus       103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~------------------~~~m~  164 (417)
                      .+..|+..+...+++++|+++.+...+...-.  ...|-.+...+.+.++.+++..+                  ...|.
T Consensus        33 a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~--i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~  110 (906)
T PRK14720         33 ELDDLIDAYKSENLTDEAKDICEEHLKEHKKS--ISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKIL  110 (906)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcc--eehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHH
Confidence            45678888889999999999999765544222  23333333355555555555444                  22222


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHH
Q 014860          165 ATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQ  244 (417)
Q Consensus       165 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~  244 (417)
                      ..+   .+...+..+..+|-+.|+.++|..+++++.+.   . +-|..+.|.+...|... +        +++|++++.+
T Consensus       111 ~~~---~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~---D-~~n~~aLNn~AY~~ae~-d--------L~KA~~m~~K  174 (906)
T PRK14720        111 LYG---ENKLALRTLAEAYAKLNENKKLKGVWERLVKA---D-RDNPEIVKKLATSYEEE-D--------KEKAITYLKK  174 (906)
T ss_pred             hhh---hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc---C-cccHHHHHHHHHHHHHh-h--------HHHHHHHHHH
Confidence            211   23357778888899999999999999999987   2 55788899999999999 8        9999999988


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC
Q 014860          245 MVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK-GFVP  323 (417)
Q Consensus       245 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p  323 (417)
                      ....               +...+++..+.+++..+.. ..  |+               +.+.-..+.+.+... |..-
T Consensus       175 AV~~---------------~i~~kq~~~~~e~W~k~~~-~~--~~---------------d~d~f~~i~~ki~~~~~~~~  221 (906)
T PRK14720        175 AIYR---------------FIKKKQYVGIEEIWSKLVH-YN--SD---------------DFDFFLRIERKVLGHREFTR  221 (906)
T ss_pred             HHHH---------------HHhhhcchHHHHHHHHHHh-cC--cc---------------cchHHHHHHHHHHhhhccch
Confidence            7754               6666788888888888765 11  22               122222333333322 3333


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860          324 SSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC  371 (417)
Q Consensus       324 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  371 (417)
                      -..++-.+-..|-...+++++..+++.+.+.. +-|.....-++..|.
T Consensus       222 ~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~  268 (906)
T PRK14720        222 LVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK  268 (906)
T ss_pred             hHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence            44556666677777778888888888877752 224455566666664

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.04  E-value=7.9e-05  Score=69.61  Aligned_cols=124  Identities=11%  Similarity=0.161  Sum_probs=103.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 014860          206 ECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND--GIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVV  283 (417)
Q Consensus       206 g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  283 (417)
                      +.+-+......++..+....+        ++.+..++...+..  ....-..|..++|..|.+.|..+.+..++..=.. 
T Consensus        61 ~~~vS~~dld~fvn~~~~~~~--------~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-  131 (429)
T PF10037_consen   61 KKPVSSLDLDIFVNNVESKDD--------LDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-  131 (429)
T ss_pred             CCCCcHHHHHHHHhhcCCHhH--------HHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-
Confidence            345566777778888877777        99999999988865  3333345667999999999999999999999888 


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860          284 YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN  338 (417)
Q Consensus       284 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~  338 (417)
                      +|+-||..++|.||+.+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+.
T Consensus       132 yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  132 YGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             cccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999887777778887777777665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.04  E-value=0.0001  Score=68.95  Aligned_cols=126  Identities=13%  Similarity=0.105  Sum_probs=105.4

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014860          248 DGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYN-YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK  326 (417)
Q Consensus       248 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  326 (417)
                      .+.+.+......++..+....+++.+..++...+.... ...-..|..++|..|...|..++++.++..=..-|+-||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            45567888889999999999999999999998876321 11223345699999999999999999999988999999999


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860          327 SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR  373 (417)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  373 (417)
                      ++|.||+.+.+.|++..|.++..+|...+.-.+..|+..-+.+|.+.
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999999999999887777888887777777665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.03  E-value=0.011  Score=62.71  Aligned_cols=273  Identities=13%  Similarity=0.044  Sum_probs=169.5

Q ss_pred             HHHHhccCChhHHHHHHHHhhcCCCC-----CCC--HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC----HHHH
Q 014860          108 CNVMTLQEDPLVCLELFNWASKQPRF-----RHD--ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT----EALY  176 (417)
Q Consensus       108 l~~l~~~~~~~~A~~~~~~~~~~~~~-----~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~  176 (417)
                      ...+...+++++|...+..+.....-     .+.  ......+...+...|++++|...++...+.... .+    ....
T Consensus       416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~  494 (903)
T PRK04841        416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL-TWYYSRIVAT  494 (903)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccHHHHHHHH
Confidence            33445778899999888876432110     111  112222234456899999999999988764221 22    2345


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhHhCCC-CCC-CCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH----CCC
Q 014860          177 NTIIYFFAEARKLSRAVYVFKYMKNSRN-LEC-RPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN----DGI  250 (417)
Q Consensus       177 ~~li~~~~~~g~~~~a~~~~~~m~~~~~-~g~-~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~----~g~  250 (417)
                      +.+...+...|++++|...+++...... .|- .....++..+...+...|+        +++|...+++..+    .+.
T Consensus       495 ~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~--------~~~A~~~~~~al~~~~~~~~  566 (903)
T PRK04841        495 SVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF--------LQAAYETQEKAFQLIEEQHL  566 (903)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHhcc
Confidence            5666777889999999999988865310 010 1112345566777888999        9999988887654    222


Q ss_pred             C--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CC
Q 014860          251 E--P-DIFSLNSMIKGYILSNHVNDALRIFHQMGVV---YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG--FV  322 (417)
Q Consensus       251 ~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~  322 (417)
                      .  + ....+..+...+...|++++|...+.+....   .+.......+..+...+...|++++|.+.+.+.....  ..
T Consensus       567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~  646 (903)
T PRK04841        567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGR  646 (903)
T ss_pred             ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence            1  1 2233445556677789999999998877441   1111123344556667788999999999998875421  11


Q ss_pred             CCHH--HH--HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860          323 PSSK--SY--NSLVSALALNGEVEETVKNLWEMIEKQRPVDF---ITYRTVLDEICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       323 p~~~--~~--~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~  389 (417)
                      ....  ..  ...+..+...|+.+.|..++............   ..+..+..++...|+.++|...+.+....
T Consensus       647 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~  720 (903)
T PRK04841        647 YHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNEN  720 (903)
T ss_pred             ccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            1111  11  11234456689999999998775543211111   11345666788999999999999987664

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.03  E-value=0.0013  Score=64.61  Aligned_cols=231  Identities=14%  Similarity=0.135  Sum_probs=141.9

Q ss_pred             HhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC--------CCCHHHHHHHHHH
Q 014860          111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF--------CGTEALYNTIIYF  182 (417)
Q Consensus       111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------~~~~~~~~~li~~  182 (417)
                      |..-|+.+.|.+-.+.+.       +...|..+.+.|.+.++++-|.-.+..|......        .++ .+-....-.
T Consensus       738 yvtiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAvL  809 (1416)
T KOG3617|consen  738 YVTIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAVL  809 (1416)
T ss_pred             EEEeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHHH
Confidence            456788888877776663       5567888888888777777776666666542211        021 222233334


Q ss_pred             HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK  262 (417)
Q Consensus       183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  262 (417)
                      ..+.|.+++|..+|++-+.            |..|=..|-..|.        +++|+++-+.=-+..+   ..||-....
T Consensus       810 AieLgMlEeA~~lYr~ckR------------~DLlNKlyQs~g~--------w~eA~eiAE~~DRiHL---r~Tyy~yA~  866 (1416)
T KOG3617|consen  810 AIELGMLEEALILYRQCKR------------YDLLNKLYQSQGM--------WSEAFEIAETKDRIHL---RNTYYNYAK  866 (1416)
T ss_pred             HHHHhhHHHHHHHHHHHHH------------HHHHHHHHHhccc--------HHHHHHHHhhccceeh---hhhHHHHHH
Confidence            4567888888888887765            3344455666777        8888776554322221   234444444


Q ss_pred             HHHhcCCHHHHHHHHHHhhhh----------C--------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014860          263 GYILSNHVNDALRIFHQMGVV----------Y--------NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS  324 (417)
Q Consensus       263 ~~~~~g~~~~a~~~~~~m~~~----------~--------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  324 (417)
                      -+-..++.+.|++.|++....          +        .-..|...|...-..+-..|+.+.|+.+|...++      
T Consensus       867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------  940 (1416)
T KOG3617|consen  867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------  940 (1416)
T ss_pred             HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------
Confidence            444556666666665543210          0        0113344455555555566777777777766553      


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860          325 SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQ  387 (417)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  387 (417)
                         |-++++..|-.|+.++|-++-++-   |   |......|.+.|...|++.+|..+|.+..
T Consensus       941 ---~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 ---YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ---hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence               566777778888888887776542   2   56666678888888888888888887653

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.02  E-value=0.00029  Score=65.59  Aligned_cols=128  Identities=14%  Similarity=0.153  Sum_probs=104.7

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860          172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE  251 (417)
Q Consensus       172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~  251 (417)
                      +-....+|+..+...++++.|+.+|+++.+.     .|+.  ...++..+...++        ..+|.+++.+..+.. +
T Consensus       168 ~NyLv~~Ll~~l~~t~~~~~ai~lle~L~~~-----~pev--~~~LA~v~l~~~~--------E~~AI~ll~~aL~~~-p  231 (395)
T PF09295_consen  168 NNYLVDTLLKYLSLTQRYDEAIELLEKLRER-----DPEV--AVLLARVYLLMNE--------EVEAIRLLNEALKEN-P  231 (395)
T ss_pred             chHHHHHHHHHHhhcccHHHHHHHHHHHHhc-----CCcH--HHHHHHHHHhcCc--------HHHHHHHHHHHHHhC-C
Confidence            3456667778888889999999999999987     4554  4568888888888        889999999988653 4


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKR  318 (417)
Q Consensus       252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  318 (417)
                      -+...+..-...+.+.++.+.|+++.+++...   .| +..+|..|..+|...|++++|+..++.+--
T Consensus       232 ~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~l---sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  232 QDSELLNLQAEFLLSKKKYELALEIAKKAVEL---SPSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            46677777778899999999999999999762   35 456999999999999999999999987753

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.01  E-value=0.00083  Score=62.29  Aligned_cols=183  Identities=15%  Similarity=0.115  Sum_probs=111.8

Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHH
Q 014860          134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRS  213 (417)
Q Consensus       134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~  213 (417)
                      .|+...+...+.+......-..+..++....+.+   ....-|..-+ .+...|.+++|+..++.+...    .+-|..-
T Consensus       271 ~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~---~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~----~P~N~~~  342 (484)
T COG4783         271 SPDFQLARARIRAKYEALPNQQAADLLAKRSKRG---GLAAQYGRAL-QTYLAGQYDEALKLLQPLIAA----QPDNPYY  342 (484)
T ss_pred             CccHHHHHHHHHHHhccccccchHHHHHHHhCcc---chHHHHHHHH-HHHHhcccchHHHHHHHHHHh----CCCCHHH
Confidence            4556666666665554444444444443333311   2223333333 344667777777777777764    2334555


Q ss_pred             HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHH
Q 014860          214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD-IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS  292 (417)
Q Consensus       214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  292 (417)
                      +......+...++        .++|.+.++.+...  .|+ ....-.+-.+|.+.|+..+|.++++....  ..+-|...
T Consensus       343 ~~~~~~i~~~~nk--------~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~  410 (484)
T COG4783         343 LELAGDILLEANK--------AKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNG  410 (484)
T ss_pred             HHHHHHHHHHcCC--------hHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchH
Confidence            5566667777777        77777777777765  344 44455566777777777777777777654  44566777


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      |..|..+|...|+..++..-..++..                  -.|+++.|...+....+.
T Consensus       411 w~~LAqay~~~g~~~~a~~A~AE~~~------------------~~G~~~~A~~~l~~A~~~  454 (484)
T COG4783         411 WDLLAQAYAELGNRAEALLARAEGYA------------------LAGRLEQAIIFLMRASQQ  454 (484)
T ss_pred             HHHHHHHHHHhCchHHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHHh
Confidence            77777777777777777776666543                  346666666666665554

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.99  E-value=7.5e-06  Score=46.22  Aligned_cols=27  Identities=41%  Similarity=0.787  Sum_probs=11.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860          293 YDYLIHGLCAQGRTKNARELCDEMKRK  319 (417)
Q Consensus       293 ~~~li~~~~~~g~~~~A~~l~~~m~~~  319 (417)
                      |+.+|++|++.|++++|.++|++|.+.
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M~~~   29 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEMRER   29 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHHhHC
Confidence            444444444444444444444444443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.98  E-value=0.0022  Score=64.45  Aligned_cols=231  Identities=9%  Similarity=0.110  Sum_probs=142.5

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI  216 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~  216 (417)
                      +..|..+..+-.+.|.+.+|.+-|-..       .|+..|.-+|+...+.|.+++-++.+...++.   .-.|.+.  +.
T Consensus      1104 p~vWsqlakAQL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk---~~E~~id--~e 1171 (1666)
T KOG0985|consen 1104 PAVWSQLAKAQLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK---VREPYID--SE 1171 (1666)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh---hcCccch--HH
Confidence            345555555555666666665544322       57788999999999999999999999888876   4466555  48


Q ss_pred             HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-------------
Q 014860          217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVV-------------  283 (417)
Q Consensus       217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------------  283 (417)
                      +|-+|++.++        +.+.++.+.       -|+......+-+-|...|.++.|.-+|.....-             
T Consensus      1172 Li~AyAkt~r--------l~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1172 LIFAYAKTNR--------LTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEY 1236 (1666)
T ss_pred             HHHHHHHhch--------HHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            9999999998        666554431       366666666667777777777776666554320             


Q ss_pred             ------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 014860          284 ------YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRP  357 (417)
Q Consensus       284 ------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  357 (417)
                            ..-..++.||--+-.+|...+.+..|     .|...++.....-..-|+.-|-..|-+++...+++.-.  |+.
T Consensus      1237 Q~AVD~aRKAns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L--GLE 1309 (1666)
T KOG0985|consen 1237 QGAVDAARKANSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL--GLE 1309 (1666)
T ss_pred             HHHHHHhhhccchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh--chh
Confidence                  00012344444444444443333322     22222334455567889999999999999888776543  332


Q ss_pred             -CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          358 -VDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       358 -p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                       .....|+-|.-.|++- ++++.++.++-.-.+     ...-.+|+++.+.
T Consensus      1310 RAHMgmfTELaiLYsky-kp~km~EHl~LFwsR-----vNipKviRA~eqa 1354 (1666)
T KOG0985|consen 1310 RAHMGMFTELAILYSKY-KPEKMMEHLKLFWSR-----VNIPKVIRAAEQA 1354 (1666)
T ss_pred             HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHh-----cchHHHHHHHHHH
Confidence             2334677776677765 445555555443332     1223566777655

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.98  E-value=0.013  Score=53.53  Aligned_cols=239  Identities=11%  Similarity=0.094  Sum_probs=158.4

Q ss_pred             HHHhcCCCCCC-HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHH--------
Q 014860           93 CAVSELPPRFN-NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDA-STYHIMTRKLGAAKMYQEMDDVVNQ--------  162 (417)
Q Consensus        93 ~~l~~~p~~~~-~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~--------  162 (417)
                      .....+|+... ...+...+...|+.+.|...|+...-..   |+. .....-...+++.|+.++...+...        
T Consensus       223 e~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~d---py~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~t  299 (564)
T KOG1174|consen  223 HDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCAN---PDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYT  299 (564)
T ss_pred             HhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCC---hhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcc
Confidence            33344455442 3445666788999999999999875321   211 1111111123344444444443333        


Q ss_pred             --------------------------HHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860          163 --------------------------MLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI  216 (417)
Q Consensus       163 --------------------------m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~  216 (417)
                                                .++...  .+...+-.=.+++...|+.++|.-.|+....-.    +-+..+|.-
T Consensus       300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~--r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La----p~rL~~Y~G  373 (564)
T KOG1174|consen  300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEP--RNHEALILKGRLLIALERHTQAVIAFRTAQMLA----PYRLEIYRG  373 (564)
T ss_pred             hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCc--ccchHHHhccHHHHhccchHHHHHHHHHHHhcc----hhhHHHHHH
Confidence                                      333222  233344444466778899999999999988641    347889999


Q ss_pred             HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHhhhhCCCCCC-HHHH
Q 014860          217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMI-KGYI-LSNHVNDALRIFHQMGVVYNYLPN-SFSY  293 (417)
Q Consensus       217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li-~~~~-~~g~~~~a~~~~~~m~~~~~~~~~-~~~~  293 (417)
                      |+.+|...|+        ..+|.-+-++..+. +.-+..+...+- ..+. ....-++|.++++.-.+   +.|+ ....
T Consensus       374 L~hsYLA~~~--------~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~---~~P~Y~~AV  441 (564)
T KOG1174|consen  374 LFHSYLAQKR--------FKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK---INPIYTPAV  441 (564)
T ss_pred             HHHHHHhhch--------HHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc---cCCccHHHH
Confidence            9999999999        88888776665432 123445554441 2222 22334788888887643   3455 4556


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          294 DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       294 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      +.+...+...|+.+++..++++-..  ..||...-+.|-+.+.....+.+|++.|......
T Consensus       442 ~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  442 NLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            7778889999999999999998876  4689999999999999999999999999887764

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.97  E-value=0.00066  Score=53.61  Aligned_cols=106  Identities=9%  Similarity=0.018  Sum_probs=71.6

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN  215 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~  215 (417)
                      +......+...+...|++++|.+.++.+...+.  .+...+..+...|.+.|++++|..+|+...+.    .+.+...+.
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~   89 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP--YNSRYWLGLAACCQMLKEYEEAIDAYALAAAL----DPDDPRPYF   89 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCCChHHHH
Confidence            344455555666677777777777777766543  46677777777777777787777777777654    244566666


Q ss_pred             HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 014860          216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL  257 (417)
Q Consensus       216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  257 (417)
                      .+...+...|+        .++|.+.|+...+..  |+...+
T Consensus        90 ~la~~~~~~g~--------~~~A~~~~~~al~~~--p~~~~~  121 (135)
T TIGR02552        90 HAAECLLALGE--------PESALKALDLAIEIC--GENPEY  121 (135)
T ss_pred             HHHHHHHHcCC--------HHHHHHHHHHHHHhc--cccchH
Confidence            67777777777        777777777777653  444443

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.97  E-value=0.0086  Score=51.07  Aligned_cols=188  Identities=11%  Similarity=0.119  Sum_probs=103.3

Q ss_pred             cCChhHHHHHHHHHHcCCC---CCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 014860          150 AKMYQEMDDVVNQMLATPS---FCGTE-ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG  225 (417)
Q Consensus       150 ~~~~~~a~~~~~~m~~~~~---~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g  225 (417)
                      ..+.++..+++..+.....   ..++. ..|..++-+...+|+.+.|...++.+..+    ++-+...-..-...+-..|
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~----fp~S~RV~~lkam~lEa~~  100 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR----FPGSKRVGKLKAMLLEATG  100 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh----CCCChhHHHHHHHHHHHhh
Confidence            4566666666666654321   11332 23455556666677777777777777765    2111111111111223345


Q ss_pred             CccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC
Q 014860          226 KNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR  305 (417)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~  305 (417)
                      .        +++|+++++.+.+.. +.|..++--=+...-..|+--+|.+-+....+  .+..|...|.-+-+.|...|+
T Consensus       101 ~--------~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~  169 (289)
T KOG3060|consen  101 N--------YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGD  169 (289)
T ss_pred             c--------hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhH
Confidence            5        667777777776655 44555665555555555665566666655554  345667777777777777777


Q ss_pred             HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHc
Q 014860          306 TKNARELCDEMKRKGFVP-SSKSYNSLVSALALNG---EVEETVKNLWEMIEK  354 (417)
Q Consensus       306 ~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~  354 (417)
                      +++|.-.++++.-.  .| +...+..+...+.-.|   +..-|.++|....+.
T Consensus       170 f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  170 FEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            77777777776654  23 3333444444443333   344566666665553

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.95  E-value=1.2e-05  Score=45.37  Aligned_cols=29  Identities=38%  Similarity=0.528  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 014860          327 SYNSLVSALALNGEVEETVKNLWEMIEKQ  355 (417)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g  355 (417)
                      +||++|++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            56666666666666666666666666554

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.95  E-value=0.00072  Score=54.22  Aligned_cols=127  Identities=13%  Similarity=0.102  Sum_probs=92.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHH
Q 014860          256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYL-PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS--KSYNSLV  332 (417)
Q Consensus       256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~--~~~~~li  332 (417)
                      .|..++..+ ..++...+.+.++.+....+-. ......-.+...+...|++++|...|+........|+.  ...-.|.
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            344455545 4888999999999988743221 11233444667788999999999999999987633332  2445577


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860          333 SALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKE  385 (417)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  385 (417)
                      ..+...|++++|+..++.....  ......+...-..|.+.|+.++|...|+.
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8889999999999999774433  33455677788899999999999999876

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=97.94  E-value=0.00036  Score=67.50  Aligned_cols=167  Identities=14%  Similarity=0.159  Sum_probs=99.1

Q ss_pred             HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 014860          109 NVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK  188 (417)
Q Consensus       109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~  188 (417)
                      ++......|.+|+.+++.+. ..  +.-..-|..+...|+..|+++.|+++|.+.          ..++-.|.+|.++|+
T Consensus       740 eaai~akew~kai~ildniq-dq--k~~s~yy~~iadhyan~~dfe~ae~lf~e~----------~~~~dai~my~k~~k  806 (1636)
T KOG3616|consen  740 EAAIGAKEWKKAISILDNIQ-DQ--KTASGYYGEIADHYANKGDFEIAEELFTEA----------DLFKDAIDMYGKAGK  806 (1636)
T ss_pred             HHHhhhhhhhhhHhHHHHhh-hh--ccccccchHHHHHhccchhHHHHHHHHHhc----------chhHHHHHHHhcccc
Confidence            33345667777777777663 22  233445667777888888888888887543          345667888888888


Q ss_pred             HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860          189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN  268 (417)
Q Consensus       189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  268 (417)
                      |++|.++-++....     ......|-+-..-+-..|+        +.+|+++|-...    .|+     .-|.+|-+.|
T Consensus       807 w~da~kla~e~~~~-----e~t~~~yiakaedldehgk--------f~eaeqlyiti~----~p~-----~aiqmydk~~  864 (1636)
T KOG3616|consen  807 WEDAFKLAEECHGP-----EATISLYIAKAEDLDEHGK--------FAEAEQLYITIG----EPD-----KAIQMYDKHG  864 (1636)
T ss_pred             HHHHHHHHHHhcCc-----hhHHHHHHHhHHhHHhhcc--------hhhhhheeEEcc----Cch-----HHHHHHHhhC
Confidence            88888877665432     4455566666666667777        666666553332    233     2355566666


Q ss_pred             CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860          269 HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD  314 (417)
Q Consensus       269 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~  314 (417)
                      ..++..++.++-...    .=..|...+..-|-..|++..|++-|-
T Consensus       865 ~~ddmirlv~k~h~d----~l~dt~~~f~~e~e~~g~lkaae~~fl  906 (1636)
T KOG3616|consen  865 LDDDMIRLVEKHHGD----HLHDTHKHFAKELEAEGDLKAAEEHFL  906 (1636)
T ss_pred             cchHHHHHHHHhChh----hhhHHHHHHHHHHHhccChhHHHHHHH
Confidence            666666665544321    112233344444555555555555443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.86  E-value=0.00036  Score=58.11  Aligned_cols=105  Identities=14%  Similarity=0.099  Sum_probs=67.6

Q ss_pred             CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014860          251 EPDIFSLNSMIKGYIL-----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS  325 (417)
Q Consensus       251 ~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  325 (417)
                      ..|..+|..+|+.|.+     .|.++-....+..|.+ +|+..|..+|+.||+.+=+ |.+- -..+|..+--       
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~e-fgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F~-------  113 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDE-FGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEFM-------  113 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHH-cCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHhc-------
Confidence            5678888888888874     4667777777888887 8888888888888887654 3221 1111111110       


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860          326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR  375 (417)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  375 (417)
                              -|  -.+-+-|++++++|...|+.||..|+..|++.+++.+.
T Consensus       114 --------hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  114 --------HY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             --------cC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                    11  12344567777777777777777777777777766654

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.83  E-value=0.034  Score=55.61  Aligned_cols=227  Identities=15%  Similarity=0.159  Sum_probs=154.5

Q ss_pred             HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH--HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc
Q 014860          147 LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF--FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR  224 (417)
Q Consensus       147 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~  224 (417)
                      ....+++..|.+....+.+..   |+ ..|..++.+  ..+.|+.++|..+++....-+    ..|..|...+-..|.+.
T Consensus        19 ~ld~~qfkkal~~~~kllkk~---Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~----~~D~~tLq~l~~~y~d~   90 (932)
T KOG2053|consen   19 LLDSSQFKKALAKLGKLLKKH---PN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLK----GTDDLTLQFLQNVYRDL   90 (932)
T ss_pred             HhhhHHHHHHHHHHHHHHHHC---CC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCC----CCchHHHHHHHHHHHHH
Confidence            346788999999998888775   33 233344444  358899999999988887652    23888999999999999


Q ss_pred             CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC
Q 014860          225 GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG  304 (417)
Q Consensus       225 g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g  304 (417)
                      ++        .++|..+|+.....  -|+..-...+..+|.+.+.+.+-.++--++-+  .++-+...|=++++.+...-
T Consensus        91 ~~--------~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK--~~pk~~yyfWsV~Slilqs~  158 (932)
T KOG2053|consen   91 GK--------LDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK--NFPKRAYYFWSVISLILQSI  158 (932)
T ss_pred             hh--------hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCcccchHHHHHHHHHHhc
Confidence            99        99999999998876  47788888899999999988765555444443  22233333333344333221


Q ss_pred             -C---------HHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHH-HHHHcCCCCCHHHHHHHHHHHHH
Q 014860          305 -R---------TKNARELCDEMKRKG-FVPSSKSYNSLVSALALNGEVEETVKNLW-EMIEKQRPVDFITYRTVLDEICR  372 (417)
Q Consensus       305 -~---------~~~A~~l~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~-~m~~~g~~p~~~~~~~li~~~~~  372 (417)
                       .         .--|.+.++.+.+.+ -.-+..-...-...+-..|.+++|++++. ...+.-..-+...-+.-+..+..
T Consensus       159 ~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~  238 (932)
T KOG2053|consen  159 FSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKL  238 (932)
T ss_pred             cCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence             1         234666666666654 22233333344455667899999999994 44444333344444556677888


Q ss_pred             cCCHhHHHHHHHHHHHCCCCC
Q 014860          373 RGRAGEAMKLLKELQNKNLID  393 (417)
Q Consensus       373 ~g~~~~A~~~~~~m~~~~~p~  393 (417)
                      .+++++..++-.++..+|.-|
T Consensus       239 l~~w~~l~~l~~~Ll~k~~Dd  259 (932)
T KOG2053|consen  239 LNRWQELFELSSRLLEKGNDD  259 (932)
T ss_pred             hcChHHHHHHHHHHHHhCCcc
Confidence            999999999999999988544

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=97.82  E-value=0.0017  Score=51.25  Aligned_cols=98  Identities=9%  Similarity=-0.018  Sum_probs=59.3

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860          172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE  251 (417)
Q Consensus       172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~  251 (417)
                      +......+...+.+.|++++|...|+.....    .+.+...|..+...+...|+        +++|..++++..+.+ +
T Consensus        16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~-p   82 (135)
T TIGR02552        16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAY----DPYNSRYWLGLAACCQMLKE--------YEEAIDAYALAAALD-P   82 (135)
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhcC-C
Confidence            3344555566666666777777766666553    13355566666666666666        666666666665544 3


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860          252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      .+...+..+-..|...|++++|.+.|+...+
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIE  113 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3455555555666666666666666666554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.81  E-value=0.00062  Score=56.75  Aligned_cols=121  Identities=14%  Similarity=0.179  Sum_probs=73.9

Q ss_pred             HHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          192 AVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN  271 (417)
Q Consensus       192 a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  271 (417)
                      -...|+.....     ..+-.+|..++..|.+...   ..++..+-....++.|.+-|+.-|..+|+.||+.+=+ |.+-
T Consensus        33 ~~~~f~~~~~~-----~k~K~~F~~~V~~f~~~~~---~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv  103 (228)
T PF06239_consen   33 HEELFERAPGQ-----AKDKATFLEAVDIFKQRDV---RRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV  103 (228)
T ss_pred             hHHHHHHHhhc-----cccHHHHHHHHHHHHhcCC---CCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc
Confidence            34555555322     4578889999998876521   1122278888889999999999999999999998765 3221


Q ss_pred             HHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860          272 DALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE  340 (417)
Q Consensus       272 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~  340 (417)
                       -..+|+.+-                .-|  ..+-+-|+++++.|+..|+.||..|+..|++.+.+.+.
T Consensus       104 -p~n~fQ~~F----------------~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  104 -PRNFFQAEF----------------MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             -cccHHHHHh----------------ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence             111111111                001  11234466666666666666666666666666655543

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=0.0092  Score=50.89  Aligned_cols=166  Identities=17%  Similarity=0.166  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHHH---CC-CCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860          235 METIRCLFKQMVN---DG-IEPDIF-SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNA  309 (417)
Q Consensus       235 ~~~a~~~~~~m~~---~g-~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A  309 (417)
                      .++..+++.++..   .| ..++.. .|..++-+...+|+.+.|...++.+.....-.+-+.-..++  -+-..|++++|
T Consensus        28 seevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A  105 (289)
T KOG3060|consen   28 SEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEA  105 (289)
T ss_pred             HHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhH
Confidence            5666666666653   23 444543 44556666667777777887777776533111222222222  24456777788


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860          310 RELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       310 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  389 (417)
                      +++++.+.+.. +-|..++.-=+-..-..|+--+|++-+.+..+. +..|...|.-+-..|...|++++|.-.+++|.-.
T Consensus       106 ~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~  183 (289)
T KOG3060|consen  106 IEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI  183 (289)
T ss_pred             HHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc
Confidence            88887777665 335566655555555666666777766666664 5567777777777777777777777777777765


Q ss_pred             CCCChhhHHHHHHHH
Q 014860          390 NLIDGYTYTKLLDVL  404 (417)
Q Consensus       390 ~~p~~~t~~~ll~~~  404 (417)
                      ..-++.-+..+-+.+
T Consensus       184 ~P~n~l~f~rlae~~  198 (289)
T KOG3060|consen  184 QPFNPLYFQRLAEVL  198 (289)
T ss_pred             CCCcHHHHHHHHHHH
Confidence            543444444443333

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.75  E-value=0.0017  Score=49.76  Aligned_cols=100  Identities=13%  Similarity=0.053  Sum_probs=61.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHH
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFV--PSSKSYNSLVSALALNGEVEETVKNLWEMIEKQ--RPVDFITYRTVL  367 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~li  367 (417)
                      ++-.+...+.+.|++++|.+.|..+.+....  .....+..+..++.+.|++++|...|+.+....  .......+..+.
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3445555666677777777777777654211  113345556677777777777777777766541  111234555666


Q ss_pred             HHHHHcCCHhHHHHHHHHHHHCCC
Q 014860          368 DEICRRGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       368 ~~~~~~g~~~~A~~~~~~m~~~~~  391 (417)
                      .++...|+.++|.+.++++.+...
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~p  107 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRYP  107 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHCc
Confidence            667777777777777777776643

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.74  E-value=0.055  Score=53.33  Aligned_cols=265  Identities=13%  Similarity=0.074  Sum_probs=163.5

Q ss_pred             hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 014860          117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVF  196 (417)
Q Consensus       117 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  196 (417)
                      ..++++.++...+..+-.|+..-|-.+  -++..++++.|.+...+..+.+.. .+...|..+.-.+...+++.+|+.+.
T Consensus       460 h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~-~~~~~whLLALvlSa~kr~~~Al~vv  536 (799)
T KOG4162|consen  460 HKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRG-DSAKAWHLLALVLSAQKRLKEALDVV  536 (799)
T ss_pred             HHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHhhhhhhHHHHHHH
Confidence            456788888887666545555544444  566788999999999999998555 78999999999999999999999998


Q ss_pred             HHhHhCCCC----------------CCCCCHHHHHHHHHHHHh---------cCC--------------ccchhhhhHHH
Q 014860          197 KYMKNSRNL----------------ECRPSIRSYNILFTAFLS---------RGK--------------NTYINHVYMET  237 (417)
Q Consensus       197 ~~m~~~~~~----------------g~~p~~~~~~~li~~~~~---------~g~--------------~~~~~~~~~~~  237 (417)
                      +...+.-+.                +..-...|...++..+-.         .|.              ...+... ...
T Consensus       537 d~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~-sr~  615 (799)
T KOG4162|consen  537 DAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST-SRY  615 (799)
T ss_pred             HHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh-hHH
Confidence            877664100                000112334444444431         000              0000000 000


Q ss_pred             HHHHHH-HHHHCC---------CC--CC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHH
Q 014860          238 IRCLFK-QMVNDG---------IE--PD------IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHG  299 (417)
Q Consensus       238 a~~~~~-~m~~~g---------~~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~  299 (417)
                      +..+.. +....|         +.  |+      ...|......+.+.+..++|.-.+.+...  ...-....|...-..
T Consensus       616 ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~  693 (799)
T KOG4162|consen  616 LSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLL  693 (799)
T ss_pred             HHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHH
Confidence            111111 111111         00  11      11223344555566666677666666544  222344455555556


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 014860          300 LCAQGRTKNARELCDEMKRKGFVP-SSKSYNSLVSALALNGEVEETVK--NLWEMIEKQRPVDFITYRTVLDEICRRGRA  376 (417)
Q Consensus       300 ~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  376 (417)
                      +...|.+++|.+.|.....-  .| ++....++..++.+.|+-.-|..  ++.++.+.+ +-+...|..+-..+-+.|+.
T Consensus       694 ~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~  770 (799)
T KOG4162|consen  694 LEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDS  770 (799)
T ss_pred             HHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccch
Confidence            66778888888888877664  33 45677888888888888777777  888877763 45667888888888888888


Q ss_pred             hHHHHHHHHHHHCC
Q 014860          377 GEAMKLLKELQNKN  390 (417)
Q Consensus       377 ~~A~~~~~~m~~~~  390 (417)
                      ++|-+.|....+..
T Consensus       771 ~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  771 KQAAECFQAALQLE  784 (799)
T ss_pred             HHHHHHHHHHHhhc
Confidence            88888888766543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.71  E-value=0.025  Score=53.49  Aligned_cols=175  Identities=11%  Similarity=0.085  Sum_probs=130.6

Q ss_pred             HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhc
Q 014860          189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP-DIFSLNSMIKGYILS  267 (417)
Q Consensus       189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~  267 (417)
                      .+.....+++.....  ...|+ .+|...|....+..-        ++.|..+|.+..+.+..+ ++.+++++|.-||. 
T Consensus       347 ~~~~~~~~~~ll~~~--~~~~t-Lv~~~~mn~irR~eG--------lkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-  414 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIE--DIDLT-LVYCQYMNFIRRAEG--------LKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-  414 (656)
T ss_pred             hhhhHHHHHHHHhhh--ccCCc-eehhHHHHHHHHhhh--------HHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-
Confidence            556666777776652  33444 457777887777777        999999999999988777 88899999998874 


Q ss_pred             CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHH
Q 014860          268 NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS--SKSYNSLVSALALNGEVEETV  345 (417)
Q Consensus       268 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~  345 (417)
                      ++...|.++|+-=.+++|  -+..--...+.-+...++-..+..+|++....++.||  ...|..+|.--..-|++..+.
T Consensus       415 kD~~~AfrIFeLGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~  492 (656)
T KOG1914|consen  415 KDKETAFRIFELGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSIL  492 (656)
T ss_pred             CChhHHHHHHHHHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHH
Confidence            678899999986555343  3334446778888899999999999999999877666  478999999999999999999


Q ss_pred             HHHHHHHHc-C--CCCCHHHHHHHHHHHHHcCCHh
Q 014860          346 KNLWEMIEK-Q--RPVDFITYRTVLDEICRRGRAG  377 (417)
Q Consensus       346 ~~~~~m~~~-g--~~p~~~~~~~li~~~~~~g~~~  377 (417)
                      ++-+++... .  ..+...+-..+++-|.-.+...
T Consensus       493 ~lekR~~~af~~~qe~~~~~~~~~v~RY~~~d~~~  527 (656)
T KOG1914|consen  493 KLEKRRFTAFPADQEYEGNETALFVDRYGILDLYP  527 (656)
T ss_pred             HHHHHHHHhcchhhcCCCChHHHHHHHHhhccccc
Confidence            988887664 1  2233334455666666555543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=97.70  E-value=0.048  Score=51.62  Aligned_cols=127  Identities=11%  Similarity=0.065  Sum_probs=91.2

Q ss_pred             HHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860          272 DALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP-SSKSYNSLVSALALNGEVEETVKNLWE  350 (417)
Q Consensus       272 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~  350 (417)
                      .....+++........|+. +|...|+...+..-++.|..+|.+..+.+..+ ++..+++++.-||. ++.+-|.++|+-
T Consensus       349 ~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFeL  426 (656)
T KOG1914|consen  349 KVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFEL  426 (656)
T ss_pred             hhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHHH
Confidence            3444444444433444443 67778888888888999999999999887776 77888889988875 678889999986


Q ss_pred             HHHc-CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC---ChhhHHHHHH
Q 014860          351 MIEK-QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI---DGYTYTKLLD  402 (417)
Q Consensus       351 m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p---~~~t~~~ll~  402 (417)
                      =..+ |-  +..--...+.-+...|+-..|..+|++....+++   ....|..+|+
T Consensus       427 GLkkf~d--~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~  480 (656)
T KOG1914|consen  427 GLKKFGD--SPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLE  480 (656)
T ss_pred             HHHhcCC--ChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHH
Confidence            5554 32  3334456677778888888888899988888663   4456777665

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=97.69  E-value=0.03  Score=55.12  Aligned_cols=212  Identities=15%  Similarity=0.125  Sum_probs=151.1

Q ss_pred             CCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC
Q 014860          130 QPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP  209 (417)
Q Consensus       130 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p  209 (417)
                      ...+..|...|..+.-++...|+++.+-+.|++....-.  .....|+.+-..|..+|.-..|+.++++-....  .-++
T Consensus       316 ~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~--~~~e~w~~~als~saag~~s~Av~ll~~~~~~~--~~ps  391 (799)
T KOG4162|consen  316 LKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF--GEHERWYQLALSYSAAGSDSKAVNLLRESLKKS--EQPS  391 (799)
T ss_pred             HhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh--hhHHHHHHHHHHHHHhccchHHHHHHHhhcccc--cCCC
Confidence            344678999999999999999999999999999876544  567889999999999999999999999877641  1123


Q ss_pred             CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH--CC--CCCCHHHHHHHHHHHHh-----------cCCHHHHH
Q 014860          210 SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN--DG--IEPDIFSLNSMIKGYIL-----------SNHVNDAL  274 (417)
Q Consensus       210 ~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~--~g--~~p~~~~~~~li~~~~~-----------~g~~~~a~  274 (417)
                      |...+-..-..|.+.-.  .     .++++++-.+..+  .|  -......|-.+--+|..           .....++.
T Consensus       392 ~~s~~Lmasklc~e~l~--~-----~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~ksl  464 (799)
T KOG4162|consen  392 DISVLLMASKLCIERLK--L-----VEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSL  464 (799)
T ss_pred             cchHHHHHHHHHHhchh--h-----hhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHH
Confidence            34444444444444322  1     4444444443333  11  12334445544444442           12356788


Q ss_pred             HHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          275 RIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       275 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      +.+++..+..+..|++..|-++-  |+-.++.+.|.+...+..+-+-.-+...|..|.-.+...+++.+|+.+.+...+.
T Consensus       465 qale~av~~d~~dp~~if~lalq--~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E  542 (799)
T KOG4162|consen  465 QALEEAVQFDPTDPLVIFYLALQ--YAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEE  542 (799)
T ss_pred             HHHHHHHhcCCCCchHHHHHHHH--HHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHH
Confidence            88888877556667776666665  5566789999999999998866778999999999999999999999999887765

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.67  E-value=0.0057  Score=48.98  Aligned_cols=125  Identities=14%  Similarity=0.182  Sum_probs=61.8

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC---HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860          175 LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS---IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE  251 (417)
Q Consensus       175 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~---~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~  251 (417)
                      .|..++..+ ..++...+...++.+.+..    +.+   ....-.+...+...|+        +++|...|+...+....
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~----~~s~ya~~A~l~lA~~~~~~g~--------~~~A~~~l~~~~~~~~d   80 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY----PSSPYAALAALQLAKAAYEQGD--------YDEAKAALEKALANAPD   80 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHC----CCChHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhhCCC
Confidence            344444444 3566666666666666541    111   1222234455556666        66666666666655422


Q ss_pred             CCH--HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860          252 PDI--FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDE  315 (417)
Q Consensus       252 p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~  315 (417)
                      ++.  ...-.+...+...|++++|+..++.... .  ......+...-..|.+.|++++|...|+.
T Consensus        81 ~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~~~-~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   81 PELKPLARLRLARILLQQGQYDEALATLQQIPD-E--AFKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccC-c--chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            211  1222344555556666666666655322 1  12233444555556666666666665553

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.60  E-value=0.0018  Score=46.61  Aligned_cols=94  Identities=17%  Similarity=0.153  Sum_probs=52.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014860          293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR  372 (417)
Q Consensus       293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  372 (417)
                      +..+...+...|++++|...+++..+... .+...+..+...+...|++++|.+.++...... +.+..++..+...+..
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~   80 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYK   80 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHH
Confidence            33444555556666666666666554421 133455555666666666666666666655542 2233455555566666


Q ss_pred             cCCHhHHHHHHHHHHH
Q 014860          373 RGRAGEAMKLLKELQN  388 (417)
Q Consensus       373 ~g~~~~A~~~~~~m~~  388 (417)
                      .|+.++|...+.+..+
T Consensus        81 ~~~~~~a~~~~~~~~~   96 (100)
T cd00189          81 LGKYEEALEAYEKALE   96 (100)
T ss_pred             HHhHHHHHHHHHHHHc
Confidence            6666666666665544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.60  E-value=0.0033  Score=48.05  Aligned_cols=102  Identities=11%  Similarity=-0.010  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHcCCCCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH
Q 014860          139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC-GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL  217 (417)
Q Consensus       139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l  217 (417)
                      ++-.....+.+.|++++|.+.+..+.+..... .....+..+..++.+.|+++.|.+.|+.+.... .+......++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~   82 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHHH
Confidence            34455556666777777777777776543210 123455566777777777777777777776531 0111124456666


Q ss_pred             HHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860          218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDG  249 (417)
Q Consensus       218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g  249 (417)
                      ...+...|+        .++|.+.++++.+..
T Consensus        83 ~~~~~~~~~--------~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        83 GMSLQELGD--------KEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHHhCC--------hHHHHHHHHHHHHHC
Confidence            666777777        777777777777654

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.59  E-value=0.0022  Score=57.61  Aligned_cols=128  Identities=9%  Similarity=0.058  Sum_probs=81.0

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-hCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH
Q 014860          139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE-ARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL  217 (417)
Q Consensus       139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l  217 (417)
                      +|..+++..-+.+..+.|+++|.+..+.+.  .+..+|-.....-.+ .++.+.|.++|+...+.    +..+...|..-
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~----f~~~~~~~~~Y   76 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKK----FPSDPDFWLEY   76 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH----HTT-HHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH----CCCCHHHHHHH
Confidence            566667777777777777777777775543  233444444444233 45566677777777764    45566677777


Q ss_pred             HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860          218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI----FSLNSMIKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      +.-+...++        .+.|..+|++....  .+..    ..|...++.=.+.|+++.+.++.+++.+
T Consensus        77 ~~~l~~~~d--------~~~aR~lfer~i~~--l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   77 LDFLIKLND--------INNARALFERAISS--LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHHHHHTT---------HHHHHHHHHHHCCT--SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHHHHhCc--------HHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            777777777        77777777777654  2333    3777777777777777777777777765

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.58  E-value=0.044  Score=47.99  Aligned_cols=184  Identities=13%  Similarity=0.067  Sum_probs=117.6

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH-HH---HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860          172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSI-RS---YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN  247 (417)
Q Consensus       172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~-~~---~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~  247 (417)
                      +...+-.....+.+.|++++|.+.|+++...     .|+. ..   .-.+..++.+.++        +++|...+++..+
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~-----yP~s~~a~~a~l~la~ayy~~~~--------y~~A~~~~e~fi~   97 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR-----YPFGPYSQQVQLDLIYAYYKNAD--------LPLAQAAIDRFIR   97 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHHHHHHHHHHhcCC--------HHHHHHHHHHHHH
Confidence            3333434555566789999999999999886     3432 22   2346677888999        9999999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHh--cC---------------CH---HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          248 DGIEPDIFSLNSMIKGYIL--SN---------------HV---NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTK  307 (417)
Q Consensus       248 ~g~~p~~~~~~~li~~~~~--~g---------------~~---~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~  307 (417)
                      ....-...-+...+.+.+.  .+               +.   .+|.+.|+.                +|.-|=...-..
T Consensus        98 ~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~----------------li~~yP~S~ya~  161 (243)
T PRK10866         98 LNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSK----------------LVRGYPNSQYTT  161 (243)
T ss_pred             hCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHH----------------HHHHCcCChhHH
Confidence            6433333344444444432  11               11   123333333                444444444455


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860          308 NARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK--QRPVDFITYRTVLDEICRRGRAGEAMKLLKE  385 (417)
Q Consensus       308 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  385 (417)
                      +|..-+..+...    =..---.+.+-|.+.|.+..|..-++.+.+.  +-+........++.+|...|..++|..+..-
T Consensus       162 ~A~~rl~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~  237 (243)
T PRK10866        162 DATKRLVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKI  237 (243)
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            665555554432    1111224567788899999999999999987  5555666777888999999999999888766


Q ss_pred             HHH
Q 014860          386 LQN  388 (417)
Q Consensus       386 m~~  388 (417)
                      +..
T Consensus       238 l~~  240 (243)
T PRK10866        238 IAA  240 (243)
T ss_pred             Hhc
Confidence            543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.58  E-value=0.058  Score=49.16  Aligned_cols=111  Identities=20%  Similarity=0.196  Sum_probs=88.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860          255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSA  334 (417)
Q Consensus       255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~  334 (417)
                      .+.+..|.-+...|+...|.++-.+..-     |+..-|-..|.+++..++|++-+++-..   .   -++.-|..++.+
T Consensus       178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fkv-----~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~  246 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQEKQAEKLKKEFKV-----PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA  246 (319)
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHHcCC-----cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence            4566677788889999998888777654     9999999999999999999988876543   1   244679999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860          335 LALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKEL  386 (417)
Q Consensus       335 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  386 (417)
                      |.+.|+..+|..+..+          .++..-+..|.+.|++.+|.+.--+.
T Consensus       247 ~~~~~~~~eA~~yI~k----------~~~~~rv~~y~~~~~~~~A~~~A~~~  288 (319)
T PF04840_consen  247 CLKYGNKKEASKYIPK----------IPDEERVEMYLKCGDYKEAAQEAFKE  288 (319)
T ss_pred             HHHCCCHHHHHHHHHh----------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence            9999999999988876          12356678889999999987764433

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.52  E-value=0.0035  Score=56.29  Aligned_cols=144  Identities=14%  Similarity=0.113  Sum_probs=103.8

Q ss_pred             HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCH
Q 014860          212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG-IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNS  290 (417)
Q Consensus       212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  290 (417)
                      .+|..++...-+.+.        .+.|.++|.+.++.+ +..+.....++|. |...++.+.|.++|+...+.  +..+.
T Consensus         2 ~v~i~~m~~~~r~~g--------~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk~--f~~~~   70 (280)
T PF05843_consen    2 LVWIQYMRFMRRTEG--------IEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLKK--FPSDP   70 (280)
T ss_dssp             HHHHHHHHHHHHHHH--------HHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHHH--HTT-H
T ss_pred             HHHHHHHHHHHHhCC--------hHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHHH--CCCCH
Confidence            578888988888888        999999999998654 2344444455554 33356777799999998874  45677


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014860          291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS---KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVL  367 (417)
Q Consensus       291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  367 (417)
                      ..|..-++.+.+.|+.+.|..+|++.... +.++.   ..|...+.-=.+.|+++.+.++.+++.+.  -|+......++
T Consensus        71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~  147 (280)
T PF05843_consen   71 DFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFS  147 (280)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHH
Confidence            88889999999999999999999998865 33222   48999999999999999999999988875  33433344444


Q ss_pred             HH
Q 014860          368 DE  369 (417)
Q Consensus       368 ~~  369 (417)
                      +-
T Consensus       148 ~r  149 (280)
T PF05843_consen  148 DR  149 (280)
T ss_dssp             CC
T ss_pred             HH
Confidence            43

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.49  E-value=0.0032  Score=45.26  Aligned_cols=92  Identities=13%  Similarity=0.107  Sum_probs=50.3

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHH
Q 014860          142 IMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAF  221 (417)
Q Consensus       142 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~  221 (417)
                      .+...+...|++++|..+++...+...  .+...+..+...+...|++++|.+.|+.....    .+.+..++..+...+
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~~~~~   78 (100)
T cd00189           5 NLGNLYYKLGDYDEALEYYEKALELDP--DNADAYYNLAAAYYKLGKYEEALEDYEKALEL----DPDNAKAYYNLGLAY   78 (100)
T ss_pred             HHHHHHHHHhcHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC----CCcchhHHHHHHHHH
Confidence            344445555666666666666555432  23345555556666666666666666665543    122334555555666


Q ss_pred             HhcCCccchhhhhHHHHHHHHHHHHH
Q 014860          222 LSRGKNTYINHVYMETIRCLFKQMVN  247 (417)
Q Consensus       222 ~~~g~~~~~~~~~~~~a~~~~~~m~~  247 (417)
                      ...|+        .++|...+....+
T Consensus        79 ~~~~~--------~~~a~~~~~~~~~   96 (100)
T cd00189          79 YKLGK--------YEEALEAYEKALE   96 (100)
T ss_pred             HHHHh--------HHHHHHHHHHHHc
Confidence            66666        6666666655543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=97.46  E-value=0.075  Score=47.56  Aligned_cols=270  Identities=13%  Similarity=0.046  Sum_probs=178.1

Q ss_pred             HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHH---HHHccCChhHHHHHHHHHHcCCCCCCCHHH-HHHHHHH
Q 014860          107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTR---KLGAAKMYQEMDDVVNQMLATPSFCGTEAL-YNTIIYF  182 (417)
Q Consensus       107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~~li~~  182 (417)
                      +...+...|++..|+.-|..+.     ..|+..|..+.+   .|...|+-..|..=++..++..   ||-.. --.-...
T Consensus        44 lGk~lla~~Q~sDALt~yHaAv-----e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelK---pDF~~ARiQRg~v  115 (504)
T KOG0624|consen   44 LGKELLARGQLSDALTHYHAAV-----EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELK---PDFMAARIQRGVV  115 (504)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHH-----cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcC---ccHHHHHHHhchh
Confidence            4455566788999999998875     345666666554   5677888888888788777754   44222 1122345


Q ss_pred             HHHhCCHHHHHHHHHHhHhCCC-CCCC--------CCHHHHH--HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860          183 FAEARKLSRAVYVFKYMKNSRN-LECR--------PSIRSYN--ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE  251 (417)
Q Consensus       183 ~~~~g~~~~a~~~~~~m~~~~~-~g~~--------p~~~~~~--~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~  251 (417)
                      +.+.|.+++|..=|+....... .|..        +....|+  ..+..+.-.|+        ...|++....+.+.. +
T Consensus       116 llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD--------~~~ai~~i~~llEi~-~  186 (504)
T KOG0624|consen  116 LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD--------CQNAIEMITHLLEIQ-P  186 (504)
T ss_pred             hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc--------hhhHHHHHHHHHhcC-c
Confidence            7799999999999999887520 0111        1112222  34455667788        899999999988765 6


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH----
Q 014860          252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS----  327 (417)
Q Consensus       252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~----  327 (417)
                      .|...+..-..+|...|++..|..-++...+ . ..-++.++--+-..+...|+.+.++...++..+.  .||-..    
T Consensus       187 Wda~l~~~Rakc~i~~~e~k~AI~Dlk~ask-L-s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~  262 (504)
T KOG0624|consen  187 WDASLRQARAKCYIAEGEPKKAIHDLKQASK-L-SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPF  262 (504)
T ss_pred             chhHHHHHHHHHHHhcCcHHHHHHHHHHHHh-c-cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHH
Confidence            7888899999999999999999877776655 2 2355666666777788889999998888887764  455432    


Q ss_pred             HHHH---------HHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChh
Q 014860          328 YNSL---------VSALALNGEVEETVKNLWEMIEKQRPVDF---ITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGY  395 (417)
Q Consensus       328 ~~~l---------i~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~  395 (417)
                      |..|         +....+.++|-++++-.+...+..-....   ..+..+-.++...|++.+|++...+..+....|..
T Consensus       263 YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~  342 (504)
T KOG0624|consen  263 YKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQ  342 (504)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHH
Confidence            2111         12233456677777766666654211112   23445555667778888888888888776433444


Q ss_pred             hH
Q 014860          396 TY  397 (417)
Q Consensus       396 t~  397 (417)
                      ++
T Consensus       343 ~l  344 (504)
T KOG0624|consen  343 VL  344 (504)
T ss_pred             HH
Confidence            43

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.42  E-value=0.01  Score=53.43  Aligned_cols=26  Identities=19%  Similarity=0.304  Sum_probs=14.2

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhH
Q 014860          175 LYNTIIYFFAEARKLSRAVYVFKYMK  200 (417)
Q Consensus       175 ~~~~li~~~~~~g~~~~a~~~~~~m~  200 (417)
                      .|......|-..|++++|...|....
T Consensus        37 ~y~~Aa~~fk~~~~~~~A~~ay~kAa   62 (282)
T PF14938_consen   37 LYEKAANCFKLAKDWEKAAEAYEKAA   62 (282)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHH
Confidence            34444555566666666666666553

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.37  E-value=0.025  Score=46.77  Aligned_cols=88  Identities=13%  Similarity=0.037  Sum_probs=49.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS  333 (417)
Q Consensus       255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~  333 (417)
                      ..+..+...+...|++++|...|++......-.+ ....+..+...+.+.|++++|...+.+..+... -+...+..+..
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~  114 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence            3455555666667777777777776654211111 134566666666777777777777766665421 13445555555


Q ss_pred             HHHhcCCHHH
Q 014860          334 ALALNGEVEE  343 (417)
Q Consensus       334 ~~~~~g~~~~  343 (417)
                      +|...|+...
T Consensus       115 ~~~~~g~~~~  124 (172)
T PRK02603        115 IYHKRGEKAE  124 (172)
T ss_pred             HHHHcCChHh
Confidence            6666555433

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.35  E-value=0.0058  Score=56.95  Aligned_cols=101  Identities=11%  Similarity=0.048  Sum_probs=84.3

Q ss_pred             HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 014860          109 NVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK  188 (417)
Q Consensus       109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~  188 (417)
                      ..+...++++.|++.|+.+.+..  +.+...|..+..++...|++++|...++.+.+...  .+...|..+..+|...|+
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~--P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P--~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLD--PNNAELYADRAQANIKLGNFTEAVADANKAIELDP--SLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHhCC
Confidence            44567899999999999998655  56788898999999999999999999999998765  577889999999999999


Q ss_pred             HHHHHHHHHHhHhCCCCCCCCCHHHHHHHH
Q 014860          189 LSRAVYVFKYMKNSRNLECRPSIRSYNILF  218 (417)
Q Consensus       189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li  218 (417)
                      +++|+..|++..+.     .|+.......+
T Consensus        86 ~~eA~~~~~~al~l-----~P~~~~~~~~l  110 (356)
T PLN03088         86 YQTAKAALEKGASL-----APGDSRFTKLI  110 (356)
T ss_pred             HHHHHHHHHHHHHh-----CCCCHHHHHHH
Confidence            99999999999975     45544444333

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.32  E-value=0.028  Score=46.45  Aligned_cols=89  Identities=10%  Similarity=-0.003  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860          173 EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE  251 (417)
Q Consensus       173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~  251 (417)
                      ...+..+...|...|++++|...|++..+..  .-.+ ....|..+...+.+.|+        +++|...+++..+.. +
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~-p  103 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLE--EDPNDRSYILYNMGIIYASNGE--------HDKALEYYHQALELN-P  103 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hccchHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-c
Confidence            3445555556666666666666666665431  0011 13455566666666666        666666666665542 1


Q ss_pred             CCHHHHHHHHHHHHhcCCHHH
Q 014860          252 PDIFSLNSMIKGYILSNHVND  272 (417)
Q Consensus       252 p~~~~~~~li~~~~~~g~~~~  272 (417)
                      -+...+..+...+...|+...
T Consensus       104 ~~~~~~~~lg~~~~~~g~~~~  124 (172)
T PRK02603        104 KQPSALNNIAVIYHKRGEKAE  124 (172)
T ss_pred             ccHHHHHHHHHHHHHcCChHh
Confidence            233444444555555555433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.31  E-value=0.00052  Score=49.20  Aligned_cols=81  Identities=20%  Similarity=0.208  Sum_probs=40.8

Q ss_pred             cCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 014860          303 QGRTKNARELCDEMKRKGF-VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMK  381 (417)
Q Consensus       303 ~g~~~~A~~l~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  381 (417)
                      .|+++.|+.+++++.+... .++...+-.+..+|.+.|++++|..+++. .+.+. .+......+..+|.+.|++++|.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            3556666666666665422 11333344456666666666666666655 21111 122223333555666666666666


Q ss_pred             HHHH
Q 014860          382 LLKE  385 (417)
Q Consensus       382 ~~~~  385 (417)
                      +|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6654

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.29  E-value=0.017  Score=44.19  Aligned_cols=105  Identities=21%  Similarity=0.188  Sum_probs=69.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHH
Q 014860          297 IHGLCAQGRTKNARELCDEMKRKGFVPS--SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD----FITYRTVLDEI  370 (417)
Q Consensus       297 i~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~  370 (417)
                      -.++-..|+.++|+.+|++....|....  ...+-.+-..+...|+.++|..++++.....  |+    ......+..++
T Consensus         8 A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    8 AWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHHHH
Confidence            3455667888888888888887776544  3456667777888888888888888777651  32    22222333466


Q ss_pred             HHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHh
Q 014860          371 CRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED  406 (417)
Q Consensus       371 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~  406 (417)
                      ...|+.++|++.+-.....   +...|..-|..|.+
T Consensus        86 ~~~gr~~eAl~~~l~~la~---~~~~y~ra~~~ya~  118 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEALAE---TLPRYRRAIRFYAD  118 (120)
T ss_pred             HHCCCHHHHHHHHHHHHHH---HHHHHHHHHHHHHh
Confidence            7788888888877665543   23366666666654

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.21  E-value=0.0011  Score=47.45  Aligned_cols=82  Identities=21%  Similarity=0.196  Sum_probs=48.4

Q ss_pred             cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014860          267 SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVK  346 (417)
Q Consensus       267 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  346 (417)
                      .|+++.|..+++++.+.....++...+-.+..+|.+.|++++|..+++. .+.+. .+....-.+..+|.+.|++++|.+
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence            4667777777777765322112344455567777777777777777766 21111 123334445677777777777777


Q ss_pred             HHHH
Q 014860          347 NLWE  350 (417)
Q Consensus       347 ~~~~  350 (417)
                      +|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            7764

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.18  E-value=0.17  Score=45.62  Aligned_cols=152  Identities=13%  Similarity=0.119  Sum_probs=80.3

Q ss_pred             HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhhCCCCC----
Q 014860          214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS-NHVNDALRIFHQMGVVYNYLP----  288 (417)
Q Consensus       214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~----  288 (417)
                      |...+..|...|+        ...|-+++.++-               ..|-.. |+++.|.+.|++..+.+.-..    
T Consensus        97 ~~~A~~~y~~~G~--------~~~aA~~~~~lA---------------~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~  153 (282)
T PF14938_consen   97 YEKAIEIYREAGR--------FSQAAKCLKELA---------------EIYEEQLGDYEKAIEYYQKAAELYEQEGSPHS  153 (282)
T ss_dssp             HHHHHHHHHHCT---------HHHHHHHHHHHH---------------HHHCCTT--HHHHHHHHHHHHHHHHHTT-HHH
T ss_pred             HHHHHHHHHhcCc--------HHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHCCChhh
Confidence            4444445666776        666655554433               334444 667777777666543111111    


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----CCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCH
Q 014860          289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGF-----VPSSK-SYNSLVSALALNGEVEETVKNLWEMIEK--QRPVDF  360 (417)
Q Consensus       289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~  360 (417)
                      -..++..+...+.+.|++++|.++|+++...-.     +.+.. .|-..+-++...|+...|.+.+++....  ++..+.
T Consensus       154 a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~  233 (282)
T PF14938_consen  154 AAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSR  233 (282)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH
Confidence            133455667778888888888888888775422     12222 2233344556678888888888887755  333332


Q ss_pred             --HHHHHHHHHHHH--cCCHhHHHHHHHHHHH
Q 014860          361 --ITYRTVLDEICR--RGRAGEAMKLLKELQN  388 (417)
Q Consensus       361 --~~~~~li~~~~~--~g~~~~A~~~~~~m~~  388 (417)
                        .....||.+|-.  ...++++..-|+.+..
T Consensus       234 E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~  265 (282)
T PF14938_consen  234 EYKFLEDLLEAYEEGDVEAFTEAVAEYDSISR  265 (282)
T ss_dssp             HHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS-
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHcccCc
Confidence              345556666543  2234455555544443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.18  E-value=0.013  Score=48.14  Aligned_cols=102  Identities=8%  Similarity=-0.090  Sum_probs=70.7

Q ss_pred             hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Q 014860          117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG-TEALYNTIIYFFAEARKLSRAVYV  195 (417)
Q Consensus       117 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~  195 (417)
                      +..+...+..+.++.+..--...|..+...+...|++++|...++.........+ ...++..+...|...|++++|+..
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            3344444444433333233455667777788889999999999999987643212 245888999999999999999999


Q ss_pred             HHHhHhCCCCCCCCCHHHHHHHHHHHH
Q 014860          196 FKYMKNSRNLECRPSIRSYNILFTAFL  222 (417)
Q Consensus       196 ~~~m~~~~~~g~~p~~~~~~~li~~~~  222 (417)
                      ++.....    .+....++..+...+.
T Consensus        95 ~~~Al~~----~~~~~~~~~~la~i~~  117 (168)
T CHL00033         95 YFQALER----NPFLPQALNNMAVICH  117 (168)
T ss_pred             HHHHHHh----CcCcHHHHHHHHHHHH
Confidence            9998875    1333556677776776

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.16  E-value=0.002  Score=43.82  Aligned_cols=64  Identities=11%  Similarity=0.148  Sum_probs=45.9

Q ss_pred             HccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHH
Q 014860          148 GAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILF  218 (417)
Q Consensus       148 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li  218 (417)
                      ...|++++|.++++.+....+  .+...+..+..+|.+.|++++|.++++.+...     .|+...|..++
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p--~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~-----~~~~~~~~~l~   65 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNP--DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ-----DPDNPEYQQLL   65 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTT--TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG-----GTTHHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CcCHHHHHHHH
Confidence            356788888888888877654  46777778888888888888888888888875     56655554443

...

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.12  E-value=0.097  Score=53.23  Aligned_cols=216  Identities=13%  Similarity=0.106  Sum_probs=127.5

Q ss_pred             ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 014860          116 DPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYV  195 (417)
Q Consensus       116 ~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  195 (417)
                      +...|+..|-...+..  .-=...|..|...|..-.+...|.+.|+...+.+.  .+...+......|++..+++.|..+
T Consensus       473 ~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa--tdaeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  473 NSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA--TDAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             hHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc--hhhhhHHHHHHHhhccccHHHHHHH
Confidence            3555555554443222  12245566666777666677777778877777665  5677777888888888888888777


Q ss_pred             HHHhHhCCCCCCCCCHHH--HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860          196 FKYMKNSRNLECRPSIRS--YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDA  273 (417)
Q Consensus       196 ~~~m~~~~~~g~~p~~~~--~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  273 (417)
                      .-..-+..    +--...  |...--.|...++        ...+..-|+...+.. +-|...|..+..+|..+|++..|
T Consensus       549 ~l~~~qka----~a~~~k~nW~~rG~yyLea~n--------~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~A  615 (1238)
T KOG1127|consen  549 CLRAAQKA----PAFACKENWVQRGPYYLEAHN--------LHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHA  615 (1238)
T ss_pred             HHHHhhhc----hHHHHHhhhhhccccccCccc--------hhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehH
Confidence            33333220    111122  2223333455555        777777777766554 44677888888888888888888


Q ss_pred             HHHHHHhhhhCCCCCCHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860          274 LRIFHQMGVVYNYLPNSFSYDYLI--HGLCAQGRTKNARELCDEMKRK------GFVPSSKSYNSLVSALALNGEVEETV  345 (417)
Q Consensus       274 ~~~~~~m~~~~~~~~~~~~~~~li--~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~  345 (417)
                      .++|.+...   +.|+. +|...-  -.-|..|++.+|...+......      +-.--..++-.+...+.-.|-..+|.
T Consensus       616 lKvF~kAs~---LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kav  691 (1238)
T KOG1127|consen  616 LKVFTKASL---LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAV  691 (1238)
T ss_pred             HHhhhhhHh---cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhh
Confidence            888887765   12332 333222  2346678888888888776543      11112334444444444445445555


Q ss_pred             HHHHHHH
Q 014860          346 KNLWEMI  352 (417)
Q Consensus       346 ~~~~~m~  352 (417)
                      .++++-+
T Consensus       692 d~~eksi  698 (1238)
T KOG1127|consen  692 DFFEKSI  698 (1238)
T ss_pred             HHHHHHH
Confidence            5555443

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.10  E-value=0.0099  Score=45.98  Aligned_cols=87  Identities=11%  Similarity=0.133  Sum_probs=67.9

Q ss_pred             CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH---------------CCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860          210 SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN---------------DGIEPDIFSLNSMIKGYILSNHVNDAL  274 (417)
Q Consensus       210 ~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~---------------~g~~p~~~~~~~li~~~~~~g~~~~a~  274 (417)
                      |..++.++|.++++.|+        ++....+.+..=.               ..+.|+..+..+++.+|+..|++..|.
T Consensus         1 de~~~~~ii~al~r~g~--------~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al   72 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQ--------LDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSAL   72 (126)
T ss_pred             ChHHHHHHHHHHhhcCC--------HHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHH
Confidence            45788999999999999        8888777765321               124577888888888888888888888


Q ss_pred             HHHHHhhhhCCCCCCHHHHHHHHHHHHhcC
Q 014860          275 RIFHQMGVVYNYLPNSFSYDYLIHGLCAQG  304 (417)
Q Consensus       275 ~~~~~m~~~~~~~~~~~~~~~li~~~~~~g  304 (417)
                      ++++...+.++++.+..+|..|++-.....
T Consensus        73 ~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s  102 (126)
T PF12921_consen   73 KLVDFFSRKYPIPIPKEFWRRLLEWAYVLS  102 (126)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHhc
Confidence            888888887888888888888887654443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.10  E-value=0.27  Score=46.65  Aligned_cols=103  Identities=10%  Similarity=-0.027  Sum_probs=76.2

Q ss_pred             HHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHhCC
Q 014860          110 VMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-EALYNTIIYFFAEARK  188 (417)
Q Consensus       110 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~  188 (417)
                      +....|+++.|+..|.......  ++|...|..-..+++..|++++|.+=-.+-.+..   |+ ...|+-...++.-.|+
T Consensus        11 aa~s~~d~~~ai~~~t~ai~l~--p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~---p~w~kgy~r~Gaa~~~lg~   85 (539)
T KOG0548|consen   11 AAFSSGDFETAIRLFTEAIMLS--PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLN---PDWAKGYSRKGAALFGLGD   85 (539)
T ss_pred             hhcccccHHHHHHHHHHHHccC--CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcC---CchhhHHHHhHHHHHhccc
Confidence            3456788999999998886555  5688888888889999999988877666555544   33 5678888888888899


Q ss_pred             HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHH
Q 014860          189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAF  221 (417)
Q Consensus       189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~  221 (417)
                      +++|+.-|.+-.+.    -+.+...++.+..++
T Consensus        86 ~~eA~~ay~~GL~~----d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   86 YEEAILAYSEGLEK----DPSNKQLKTGLAQAY  114 (539)
T ss_pred             HHHHHHHHHHHhhc----CCchHHHHHhHHHhh
Confidence            99999999887765    133455566666665

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.09  E-value=0.017  Score=53.89  Aligned_cols=101  Identities=12%  Similarity=0.042  Sum_probs=84.6

Q ss_pred             HHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc
Q 014860          145 RKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR  224 (417)
Q Consensus       145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~  224 (417)
                      ..+...|++++|.+.+++.++...  .+...|..+..+|.+.|++++|+..+++....    -+.+...|..+..+|...
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P--~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l----~P~~~~a~~~lg~~~~~l   83 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDP--NNAELYADRAQANIKLGNFTEAVADANKAIEL----DPSLAKAYLRKGTACMKL   83 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHh
Confidence            456688999999999999998775  57888999999999999999999999999875    134677899999999999


Q ss_pred             CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860          225 GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMI  261 (417)
Q Consensus       225 g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li  261 (417)
                      |+        +++|...|++..+..  |+.......+
T Consensus        84 g~--------~~eA~~~~~~al~l~--P~~~~~~~~l  110 (356)
T PLN03088         84 EE--------YQTAKAALEKGASLA--PGDSRFTKLI  110 (356)
T ss_pred             CC--------HHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence            99        999999999999764  5544444444

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.09  E-value=0.17  Score=44.28  Aligned_cols=185  Identities=10%  Similarity=0.007  Sum_probs=111.5

Q ss_pred             HHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHH---HHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH
Q 014860          143 MTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALY---NTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT  219 (417)
Q Consensus       143 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~  219 (417)
                      ....+...|++++|.+.|+.+....+.  +....   -.+..+|.+.+++++|...|++..+.-  .-.|+ ..|...+.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~yP~--s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~--P~~~~-~~~a~Y~~  112 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRYPF--GPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPN-IDYVLYMR  112 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC--ChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC--cCCCc-hHHHHHHH
Confidence            344456789999999999999886643  22222   355678889999999999999998762  11222 23444444


Q ss_pred             HHHh--cCC----------ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 014860          220 AFLS--RGK----------NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYL  287 (417)
Q Consensus       220 ~~~~--~g~----------~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  287 (417)
                      +.+.  .++          ...-+.....+|++.|+++.+.               |=.+.-..+|..-+..+...    
T Consensus       113 g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~---------------yP~S~ya~~A~~rl~~l~~~----  173 (243)
T PRK10866        113 GLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG---------------YPNSQYTTDATKRLVFLKDR----  173 (243)
T ss_pred             HHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH---------------CcCChhHHHHHHHHHHHHHH----
Confidence            4332  110          0000001133455555555543               33333345555544444331    


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860          288 PNSFSYDYLIHGLCAQGRTKNARELCDEMKRK--GFVPSSKSYNSLVSALALNGEVEETVKNLWEMI  352 (417)
Q Consensus       288 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  352 (417)
                      .-. .--.+..-|.+.|.+..|..=++.+.+.  +.+........++.+|...|..++|..+...+.
T Consensus       174 la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        174 LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            111 1124566688888888888888888875  444456677788899999999998888776554

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.07  E-value=0.012  Score=45.49  Aligned_cols=52  Identities=19%  Similarity=0.264  Sum_probs=43.0

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 014860          320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-QRPVDFITYRTVLDEIC  371 (417)
Q Consensus       320 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~~  371 (417)
                      ...|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|++-..
T Consensus        47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~   99 (126)
T PF12921_consen   47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAY   99 (126)
T ss_pred             CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            46688888899999998899999999988888777 77778888888888543

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.06  E-value=0.06  Score=43.88  Aligned_cols=132  Identities=12%  Similarity=0.064  Sum_probs=96.1

Q ss_pred             hHHHHHHhcCCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCC
Q 014860           89 TQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPS  168 (417)
Q Consensus        89 ~~~~~~l~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  168 (417)
                      ....+.+..-|....--.|..++.+.|+..+|...|.... ..-+..|....-.+.++....+++..|...++.+.+.+.
T Consensus        77 Rea~~~~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qal-sG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~p  155 (251)
T COG4700          77 REATEELAIAPTVQNRYRLANALAELGRYHEAVPHYQQAL-SGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNP  155 (251)
T ss_pred             HHHHHHHhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHh-ccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCC
Confidence            3344455555555555567788888899999999998874 444677888888888888888999999999988887664


Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860          169 FCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK  226 (417)
Q Consensus       169 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~  226 (417)
                      ...+..+.-.+.+.|...|.+.+|..-|+.....     .|+...-...-..+.+.|+
T Consensus       156 a~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~-----ypg~~ar~~Y~e~La~qgr  208 (251)
T COG4700         156 AFRSPDGHLLFARTLAAQGKYADAESAFEVAISY-----YPGPQARIYYAEMLAKQGR  208 (251)
T ss_pred             ccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHh-----CCCHHHHHHHHHHHHHhcc
Confidence            3344555667778888899999999999988864     6665554444444556665

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.04  E-value=0.076  Score=42.40  Aligned_cols=86  Identities=12%  Similarity=-0.077  Sum_probs=37.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 014860          300 LCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEA  379 (417)
Q Consensus       300 ~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  379 (417)
                      +...|++++|..+|+-+..-... +..-|-.|--+|-..|++.+|...|....... +-|...+-.+-.++...|+.+.|
T Consensus        45 ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~A  122 (157)
T PRK15363         45 LMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCYA  122 (157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHHH
Confidence            34444444444444444433211 33334444444444444444444444444432 12333444444444444554444


Q ss_pred             HHHHHHHH
Q 014860          380 MKLLKELQ  387 (417)
Q Consensus       380 ~~~~~~m~  387 (417)
                      .+-|+..+
T Consensus       123 ~~aF~~Ai  130 (157)
T PRK15363        123 IKALKAVV  130 (157)
T ss_pred             HHHHHHHH
Confidence            44444433

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.04  E-value=0.24  Score=45.15  Aligned_cols=110  Identities=15%  Similarity=0.162  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860          212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF  291 (417)
Q Consensus       212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  291 (417)
                      .+.+..|.-+...|+        ...|.++-.+..    .||..-|-..|.+++..++|++-.++... +      .+..
T Consensus       178 ~Sl~~Ti~~li~~~~--------~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-k------KsPI  238 (319)
T PF04840_consen  178 LSLNDTIRKLIEMGQ--------EKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-K------KSPI  238 (319)
T ss_pred             CCHHHHHHHHHHCCC--------HHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-C------CCCC
Confidence            456667888888998        888888877664    68999999999999999999988876543 1      3447


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWE  350 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  350 (417)
                      .|..++.+|.+.|...+|..++..+          .+..-+..|.+.|++.+|.+.--+
T Consensus       239 GyepFv~~~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  239 GYEPFVEACLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             ChHHHHHHHHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHH
Confidence            8999999999999999999988872          235567888999999999776443

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=97.04  E-value=0.1  Score=51.96  Aligned_cols=71  Identities=11%  Similarity=0.171  Sum_probs=31.8

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA  192 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a  192 (417)
                      .-|-.++|+.+|+.-. +         |..+=..|-..|.+++|.++-+.-.+...    ..||..-...+-..++.+.|
T Consensus       812 eLgMlEeA~~lYr~ck-R---------~DLlNKlyQs~g~w~eA~eiAE~~DRiHL----r~Tyy~yA~~Lear~Di~~A  877 (1416)
T KOG3617|consen  812 ELGMLEEALILYRQCK-R---------YDLLNKLYQSQGMWSEAFEIAETKDRIHL----RNTYYNYAKYLEARRDIEAA  877 (1416)
T ss_pred             HHhhHHHHHHHHHHHH-H---------HHHHHHHHHhcccHHHHHHHHhhccceeh----hhhHHHHHHHHHhhccHHHH
Confidence            4455566666665542 1         12222333445555555555443333222    13444444444444555555


Q ss_pred             HHHHH
Q 014860          193 VYVFK  197 (417)
Q Consensus       193 ~~~~~  197 (417)
                      ++.|+
T Consensus       878 leyyE  882 (1416)
T KOG3617|consen  878 LEYYE  882 (1416)
T ss_pred             HHHHH
Confidence            44444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.03  E-value=0.17  Score=43.05  Aligned_cols=185  Identities=10%  Similarity=0.073  Sum_probs=84.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN  258 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  258 (417)
                      ....+.+.|++++|.+.|+.+...- .+-+--....-.+..++.+.|+        ++.|...++++.+.-..-...-+.
T Consensus        11 ~a~~~~~~g~y~~Ai~~f~~l~~~~-P~s~~a~~A~l~la~a~y~~~~--------y~~A~~~~~~fi~~yP~~~~~~~A   81 (203)
T PF13525_consen   11 KALEALQQGDYEEAIKLFEKLIDRY-PNSPYAPQAQLMLAYAYYKQGD--------YEEAIAAYERFIKLYPNSPKADYA   81 (203)
T ss_dssp             HHHHHHHCT-HHHHHHHHHHHHHH--TTSTTHHHHHHHHHHHHHHTT---------HHHHHHHHHHHHHH-TT-TTHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHCCCCcchhhH
Confidence            3344556677777777777776541 0111123344556666667777        777777777766542111112222


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhh-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860          259 SMIKGYILSNHVNDALRIFHQMGVV-YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALAL  337 (417)
Q Consensus       259 ~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~  337 (417)
                      ..+.+.+.........    ....+ ....--...+..+|.-|=...-..+|...+.++.+.    =...--.+..-|.+
T Consensus        82 ~Y~~g~~~~~~~~~~~----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~  153 (203)
T PF13525_consen   82 LYMLGLSYYKQIPGIL----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYK  153 (203)
T ss_dssp             HHHHHHHHHHHHHHHH-----TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCccch----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence            2222222111111110    00000 000000123444444555555555665555554432    01112224566777


Q ss_pred             cCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHhHHH
Q 014860          338 NGEVEETVKNLWEMIEK--QRPVDFITYRTVLDEICRRGRAGEAM  380 (417)
Q Consensus       338 ~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~  380 (417)
                      .|.+..|..-++.+.+.  +.+........++.+|.+.|..+.+.
T Consensus       154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            78888888888777776  22122234566777777777766443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.03  E-value=0.036  Score=45.54  Aligned_cols=116  Identities=13%  Similarity=-0.060  Sum_probs=78.4

Q ss_pred             hhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchh
Q 014860          153 YQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYIN  231 (417)
Q Consensus       153 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~  231 (417)
                      +..+.+.+..+.+..........|..+...+...|++++|+..|++.....  .-.+ ...+|..+-..+...|+     
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~--~~~~~~~~~~~~lg~~~~~~g~-----   87 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE--IDPYDRSYILYNIGLIHTSNGE-----   87 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc--ccchhhHHHHHHHHHHHHHcCC-----
Confidence            344444555553322221335677888888889999999999999997651  1111 23578899999999999     


Q ss_pred             hhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHH
Q 014860          232 HVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYI-------LSNHVNDALRIFHQ  279 (417)
Q Consensus       232 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~-------~~g~~~~a~~~~~~  279 (417)
                         .++|++.++...+.. +....++..+...+.       ..|+++.|...+++
T Consensus        88 ---~~eA~~~~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033         88 ---HTKALEYYFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             ---HHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence               999999999988753 333455666666666       66666655544443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.88  E-value=0.077  Score=51.93  Aligned_cols=139  Identities=11%  Similarity=-0.001  Sum_probs=96.0

Q ss_pred             CCHHHHHHHHh--cc---CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHcc--------CChhHHHHHHHHHHcCCC
Q 014860          102 FNNEELCNVMT--LQ---EDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAA--------KMYQEMDDVVNQMLATPS  168 (417)
Q Consensus       102 ~~~~~ll~~l~--~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~~~  168 (417)
                      ..|...+++..  ..   ++...|+++|+.+.+..  +-....|..+..++...        .+++.+.+........+.
T Consensus       338 ~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~  415 (517)
T PRK10153        338 AALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPE  415 (517)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhccc
Confidence            35666777653  22   33779999999997654  33455555544333221        123344444444444322


Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          169 FCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       169 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      ...+...|.++.-.+...|++++|...|++....     .|+...|..+...+...|+        .++|.+.|++....
T Consensus       416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L-----~ps~~a~~~lG~~~~~~G~--------~~eA~~~~~~A~~L  482 (517)
T PRK10153        416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL-----EMSWLNYVLLGKVYELKGD--------NRLAADAYSTAFNL  482 (517)
T ss_pred             CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhc
Confidence            3256678888877777889999999999999986     6789999999999999999        99999999998876


Q ss_pred             CCCCCHHHH
Q 014860          249 GIEPDIFSL  257 (417)
Q Consensus       249 g~~p~~~~~  257 (417)
                      .  |...||
T Consensus       483 ~--P~~pt~  489 (517)
T PRK10153        483 R--PGENTL  489 (517)
T ss_pred             C--CCCchH
Confidence            4  444444

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.43  Score=45.35  Aligned_cols=229  Identities=14%  Similarity=0.124  Sum_probs=123.6

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH
Q 014860          140 YHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT  219 (417)
Q Consensus       140 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~  219 (417)
                      ...+.++.-+..+++.+.+-+....+..   .+..-++....+|...|++.++...-+...+.+    .-...-|+.+-.
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g----re~rad~klIak  299 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERGKYAECIELCEKAVEVG----RELRADYKLIAK  299 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh----HHHHHHHHHHHH
Confidence            4456666677778888888888877765   355566677778888888888777776666552    112334555555


Q ss_pred             HHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH-HHHHHHH
Q 014860          220 AFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF-SYDYLIH  298 (417)
Q Consensus       220 ~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~~li~  298 (417)
                      ++.+.|. .+.....++.++..|.+.....-.||...         +....+++++..+...-   +.|... -.-.=-+
T Consensus       300 ~~~r~g~-a~~k~~~~~~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a~---~~pe~A~e~r~kGn  366 (539)
T KOG0548|consen  300 ALARLGN-AYTKREDYEGAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKAY---INPEKAEEEREKGN  366 (539)
T ss_pred             HHHHhhh-hhhhHHhHHHHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHHh---hChhHHHHHHHHHH
Confidence            5555332 22222337888888877654433333211         11222333333322221   112210 0111134


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 014860          299 GLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGE  378 (417)
Q Consensus       299 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  378 (417)
                      .+.+.|++..|...|.++.... +-|...|..-.-+|.+.|.+..|+.=-+.-.+. -++....|..=..++.-..++++
T Consensus       367 e~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL-~p~~~kgy~RKg~al~~mk~ydk  444 (539)
T KOG0548|consen  367 EAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL-DPNFIKAYLRKGAALRAMKEYDK  444 (539)
T ss_pred             HHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-CchHHHHHHHHHHHHHHHHHHHH
Confidence            4556667777777777766654 225566666666666777666666655555543 12222233333334444556666


Q ss_pred             HHHHHHHHHHCC
Q 014860          379 AMKLLKELQNKN  390 (417)
Q Consensus       379 A~~~~~~m~~~~  390 (417)
                      |++.|.+-.+.+
T Consensus       445 Aleay~eale~d  456 (539)
T KOG0548|consen  445 ALEAYQEALELD  456 (539)
T ss_pred             HHHHHHHHHhcC
Confidence            666666666554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=96.87  E-value=0.12  Score=50.64  Aligned_cols=62  Identities=8%  Similarity=-0.007  Sum_probs=32.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR  318 (417)
Q Consensus       254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  318 (417)
                      ...|.++-......|++++|...+++... .  .|+...|..+...+...|+.++|.+.+++...
T Consensus       420 ~~~~~ala~~~~~~g~~~~A~~~l~rAl~-L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~  481 (517)
T PRK10153        420 PRIYEILAVQALVKGKTDEAYQAINKAID-L--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFN  481 (517)
T ss_pred             hHHHHHHHHHHHhcCCHHHHHHHHHHHHH-c--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            34444444444445555555555555544 1  24555555555555555666555555555444

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=96.85  E-value=0.005  Score=41.83  Aligned_cols=50  Identities=18%  Similarity=0.201  Sum_probs=19.8

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          303 QGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       303 ~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      .|++++|.++|+.+...... |...+..+..+|.+.|++++|..+++.+..
T Consensus         4 ~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~   53 (68)
T PF14559_consen    4 QGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLK   53 (68)
T ss_dssp             TTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred             ccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444444444333111 333333444444444444444444444443

...

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.85  E-value=0.0066  Score=40.84  Aligned_cols=57  Identities=12%  Similarity=0.104  Sum_probs=42.0

Q ss_pred             HHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860          144 TRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       144 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      ...+.+.|++++|.+.++.+.+..+  .+...+..+..++.+.|++++|...|+++.+.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P--~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDP--DNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCST--THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            3456677888888888888877763  46777777778888888888888888877654

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.25  Score=42.70  Aligned_cols=140  Identities=11%  Similarity=0.062  Sum_probs=95.6

Q ss_pred             HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH
Q 014860          214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY  293 (417)
Q Consensus       214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  293 (417)
                      .+.++..+.-.|.        +.-...++.+..+...+-++.....|.+.-.+.|+.+.|...|++.++.. -..|..++
T Consensus       180 my~~~~~llG~kE--------y~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~-~kL~~~q~  250 (366)
T KOG2796|consen  180 MYSMANCLLGMKE--------YVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVT-QKLDGLQG  250 (366)
T ss_pred             HHHHHHHHhcchh--------hhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH-hhhhccch
Confidence            3455555656666        77777888888887767778888888888889999999999999776632 22333333


Q ss_pred             HH-----HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 014860          294 DY-----LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRT  365 (417)
Q Consensus       294 ~~-----li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  365 (417)
                      +.     ....|.-.+++.+|...+.++....-. |....|.-.-+..-.|+..+|++.++.|...  .|...+-+.
T Consensus       251 ~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es  324 (366)
T KOG2796|consen  251 KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHES  324 (366)
T ss_pred             hHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhh
Confidence            33     333455667888888888887765422 5555555444455568899999999999876  455444443

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=96.76  E-value=0.047  Score=43.58  Aligned_cols=98  Identities=8%  Similarity=0.005  Sum_probs=79.4

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI  216 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~  216 (417)
                      ....-.+..-+...|++++|.++|+.+....+  -+..-|-.|.-++-..|++++|+..|.....-   . +-|...+-.
T Consensus        35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp--~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L---~-~ddp~~~~~  108 (157)
T PRK15363         35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA--WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI---K-IDAPQAPWA  108 (157)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---C-CCCchHHHH
Confidence            33444445566789999999999999988876  57778888888899999999999999998875   2 456788888


Q ss_pred             HHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      +-.++...|+        .+.|.+.|+.....
T Consensus       109 ag~c~L~lG~--------~~~A~~aF~~Ai~~  132 (157)
T PRK15363        109 AAECYLACDN--------VCYAIKALKAVVRI  132 (157)
T ss_pred             HHHHHHHcCC--------HHHHHHHHHHHHHH
Confidence            9999999999        99999999877653

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=96.75  E-value=0.092  Score=53.41  Aligned_cols=166  Identities=11%  Similarity=0.028  Sum_probs=117.7

Q ss_pred             HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCH
Q 014860          211 IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNS  290 (417)
Q Consensus       211 ~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  290 (417)
                      ...|..|-..|+..-+        +..|.+.|+...+.. .-|...+....+.|+...+++.|..+.-...+......-.
T Consensus       492 apaf~~LG~iYrd~~D--------m~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k  562 (1238)
T KOG1127|consen  492 APAFAFLGQIYRDSDD--------MKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACK  562 (1238)
T ss_pred             hHHHHHHHHHHHHHHH--------HHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHH
Confidence            4567777777777777        889999999888765 4567788889999999999999999844443311111112


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--
Q 014860          291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLD--  368 (417)
Q Consensus       291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~--  368 (417)
                      .-|...--.|...++...|..-|+.......+ |...|..+..+|..+|++..|.++|.+....  .|+. +|...-.  
T Consensus       563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--rP~s-~y~~fk~A~  638 (1238)
T KOG1127|consen  563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLL--RPLS-KYGRFKEAV  638 (1238)
T ss_pred             hhhhhccccccCccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhc--CcHh-HHHHHHHHH
Confidence            22333333456677888888888887766444 7888999999999999999999999887764  4543 3333333  


Q ss_pred             HHHHcCCHhHHHHHHHHHHHC
Q 014860          369 EICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       369 ~~~~~g~~~~A~~~~~~m~~~  389 (417)
                      .-+..|.+++|+..+......
T Consensus       639 ~ecd~GkYkeald~l~~ii~~  659 (1238)
T KOG1127|consen  639 MECDNGKYKEALDALGLIIYA  659 (1238)
T ss_pred             HHHHhhhHHHHHHHHHHHHHH
Confidence            346788888888888877653

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=96.72  E-value=0.42  Score=43.00  Aligned_cols=247  Identities=10%  Similarity=0.029  Sum_probs=164.7

Q ss_pred             ChhHHHHHHhcCCCCCCHHH-HHHHHhccCChhHHHHHHHHhhcCCCC-CCCHHHHHH------------HHHHHHccCC
Q 014860           87 DDTQFRCAVSELPPRFNNEE-LCNVMTLQEDPLVCLELFNWASKQPRF-RHDASTYHI------------MTRKLGAAKM  152 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~~~~~~-ll~~l~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~------------li~~~~~~~~  152 (417)
                      ....+.+.+...|+-..... -..++.++|..+.|..-|+.+.+...- ....+.+..            .+..+...|+
T Consensus        91 al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD  170 (504)
T KOG0624|consen   91 ALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD  170 (504)
T ss_pred             chhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence            44557777777776432211 133457899999999999998753310 011122221            2334557789


Q ss_pred             hhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhh
Q 014860          153 YQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINH  232 (417)
Q Consensus       153 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~  232 (417)
                      ...|+.....+++..+  .|...|..-..+|...|++..|+.=++...+-    -..++.++--+-..+...|+      
T Consensus       171 ~~~ai~~i~~llEi~~--Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askL----s~DnTe~~ykis~L~Y~vgd------  238 (504)
T KOG0624|consen  171 CQNAIEMITHLLEIQP--WDASLRQARAKCYIAEGEPKKAIHDLKQASKL----SQDNTEGHYKISQLLYTVGD------  238 (504)
T ss_pred             hhhHHHHHHHHHhcCc--chhHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----cccchHHHHHHHHHHHhhhh------
Confidence            9999999999988765  78888999999999999999998877776654    13456777777788888898      


Q ss_pred             hhHHHHHHHHHHHHHCCCCCCHHHHHHH-------------HHHHHhcCCHHHHHHHHHHhhhhCCCCCC-----HHHHH
Q 014860          233 VYMETIRCLFKQMVNDGIEPDIFSLNSM-------------IKGYILSNHVNDALRIFHQMGVVYNYLPN-----SFSYD  294 (417)
Q Consensus       233 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l-------------i~~~~~~g~~~~a~~~~~~m~~~~~~~~~-----~~~~~  294 (417)
                        .+.++...++-.+.  .||...+-..             +......++|.++.+-.+...+ .  .|.     ...+.
T Consensus       239 --~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk-~--ep~~~~ir~~~~r  311 (504)
T KOG0624|consen  239 --AENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLK-N--EPEETMIRYNGFR  311 (504)
T ss_pred             --HHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-c--CCcccceeeeeeh
Confidence              88888888877765  4665433111             1223445667666666666544 2  232     22233


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          295 YLIHGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       295 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      .+-.++...|++.+|++...+..+.  .|| +.++.-=..+|..-..+|.|..=|+...+.
T Consensus       312 ~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  312 VLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             eeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence            4555566677888888888887764  444 677777777787777888888888877765

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=96.72  E-value=0.18  Score=38.68  Aligned_cols=91  Identities=20%  Similarity=0.128  Sum_probs=48.7

Q ss_pred             HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-CCCHHHHHH
Q 014860          219 TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD--IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNY-LPNSFSYDY  295 (417)
Q Consensus       219 ~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~~~~  295 (417)
                      .++-..|+        .++|+.+|++..+.|+...  ...+-.+-..+...|++++|..+|++......- .-+......
T Consensus         9 ~a~d~~G~--------~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f   80 (120)
T PF12688_consen    9 WAHDSLGR--------EEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVF   80 (120)
T ss_pred             HHHHhcCC--------HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHH
Confidence            34455666        6777777777776665433  223344555566667777777777666542110 001222222


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Q 014860          296 LIHGLCAQGRTKNARELCDEMK  317 (417)
Q Consensus       296 li~~~~~~g~~~~A~~l~~~m~  317 (417)
                      +..++...|+.++|+..+-...
T Consensus        81 ~Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   81 LALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHH
Confidence            3335556666666666665544

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.64  E-value=0.018  Score=46.10  Aligned_cols=71  Identities=18%  Similarity=0.137  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHH
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-----QRPVDFITY  363 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~  363 (417)
                      +...++..+...|++++|..+...+.... +-|...|..+|.+|...|+..+|.++|+.+...     |+.|+..+-
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~  139 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR  139 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence            34455556666677777777777666543 235666777777777777777777776665432     666666543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.60  E-value=0.064  Score=42.84  Aligned_cols=73  Identities=15%  Similarity=0.182  Sum_probs=53.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH-----HC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV-----ND  248 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~-----~~  248 (417)
                      .+...++..+...|++++|.++.+.+...    -+.+...|..+|.+|...|+        ...|.++|+++.     +.
T Consensus        63 ~~~~~l~~~~~~~~~~~~a~~~~~~~l~~----dP~~E~~~~~lm~~~~~~g~--------~~~A~~~Y~~~~~~l~~el  130 (146)
T PF03704_consen   63 DALERLAEALLEAGDYEEALRLLQRALAL----DPYDEEAYRLLMRALAAQGR--------RAEALRVYERYRRRLREEL  130 (146)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH----STT-HHHHHHHHHHHHHTT---------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHCcC--------HHHHHHHHHHHHHHHHHHh
Confidence            35566777788899999999999999986    25577889999999999999        999999998875     35


Q ss_pred             CCCCCHHHHH
Q 014860          249 GIEPDIFSLN  258 (417)
Q Consensus       249 g~~p~~~~~~  258 (417)
                      |+.|+..+-.
T Consensus       131 g~~Ps~~~~~  140 (146)
T PF03704_consen  131 GIEPSPETRA  140 (146)
T ss_dssp             S----HHHHH
T ss_pred             CcCcCHHHHH
Confidence            8888876644

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.59  E-value=0.054  Score=47.94  Aligned_cols=96  Identities=14%  Similarity=0.130  Sum_probs=55.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHH
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS----SKSYNSLVSALALNGEVEETVKNLWEMIEK--QRPVDFITYRT  365 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~  365 (417)
                      .|...+..+.+.|++++|...|+.+.+.-  |+    ...+-.+..+|...|++++|...|+.+.+.  +-......+..
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            34444444455566777776666666542  22    234556666666777777777777776654  11112233444


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHHC
Q 014860          366 VLDEICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       366 li~~~~~~g~~~~A~~~~~~m~~~  389 (417)
                      +...+...|+.++|..+|+++.+.
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHH
Confidence            455566677777777777766655

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.55  E-value=0.017  Score=38.82  Aligned_cols=54  Identities=17%  Similarity=0.206  Sum_probs=23.7

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          299 GLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       299 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      .+...|++++|...|++..+.. +-+...+..+..++...|++++|..+|+++.+
T Consensus         6 ~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~   59 (65)
T PF13432_consen    6 ALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALE   59 (65)
T ss_dssp             HHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3444444444444444444432 11334444444444444444444444444443

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.42  E-value=0.039  Score=48.41  Aligned_cols=101  Identities=13%  Similarity=0.103  Sum_probs=85.0

Q ss_pred             hccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHH
Q 014860          112 TLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSR  191 (417)
Q Consensus       112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~  191 (417)
                      ...+++.+|+..|..+.+-.  +-|..-|..-..+|.+.|.++.|++=.+..+..+.  .-..+|..|-.+|...|++++
T Consensus        92 m~~~~Y~eAv~kY~~AI~l~--P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp--~yskay~RLG~A~~~~gk~~~  167 (304)
T KOG0553|consen   92 MKNKDYQEAVDKYTEAIELD--PTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDP--HYSKAYGRLGLAYLALGKYEE  167 (304)
T ss_pred             HHhhhHHHHHHHHHHHHhcC--CCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcCh--HHHHHHHHHHHHHHccCcHHH
Confidence            56789999999999997554  56888899999999999999999999988888764  457899999999999999999


Q ss_pred             HHHHHHHhHhCCCCCCCCCHHHHHHHHHHH
Q 014860          192 AVYVFKYMKNSRNLECRPSIRSYNILFTAF  221 (417)
Q Consensus       192 a~~~~~~m~~~~~~g~~p~~~~~~~li~~~  221 (417)
                      |++.|+...+     +.|+-.+|-.=+...
T Consensus       168 A~~aykKaLe-----ldP~Ne~~K~nL~~A  192 (304)
T KOG0553|consen  168 AIEAYKKALE-----LDPDNESYKSNLKIA  192 (304)
T ss_pred             HHHHHHhhhc-----cCCCcHHHHHHHHHH
Confidence            9999999886     478877765544433

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.41  E-value=0.58  Score=46.07  Aligned_cols=95  Identities=7%  Similarity=-0.061  Sum_probs=49.1

Q ss_pred             HHHhcCCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHH------HHHHccCChhHHHHHHHHHHcC
Q 014860           93 CAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMT------RKLGAAKMYQEMDDVVNQMLAT  166 (417)
Q Consensus        93 ~~l~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li------~~~~~~~~~~~a~~~~~~m~~~  166 (417)
                      +-....|.+..|..+.+.....-..+.|...|-+...-.|++.-...-...-      ..-+--|.+++|++++-+|.++
T Consensus       684 qfiEdnPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drr  763 (1189)
T KOG2041|consen  684 QFIEDNPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRR  763 (1189)
T ss_pred             HHHhcCCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchh
Confidence            3344556666777666666555566666666655533333322111111100      1112346777777777666554


Q ss_pred             CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Q 014860          167 PSFCGTEALYNTIIYFFAEARKLSRAVYVFK  197 (417)
Q Consensus       167 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~  197 (417)
                      +          ..|..+.+.|++-++.++++
T Consensus       764 D----------LAielr~klgDwfrV~qL~r  784 (1189)
T KOG2041|consen  764 D----------LAIELRKKLGDWFRVYQLIR  784 (1189)
T ss_pred             h----------hhHHHHHhhhhHHHHHHHHH
Confidence            3          24555566666655555544

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.37  E-value=0.44  Score=39.07  Aligned_cols=164  Identities=10%  Similarity=0.006  Sum_probs=105.7

Q ss_pred             CCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 014860          101 RFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII  180 (417)
Q Consensus       101 ~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li  180 (417)
                      ..+-..+..++...=|++..++-...-   -...|+...--.+..++.+.|+..+|...|++...-..- .|....-.+.
T Consensus        56 ~R~a~~~~~a~~q~ldP~R~~Rea~~~---~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA-~d~a~lLglA  131 (251)
T COG4700          56 DRHAHTLLMALQQKLDPERHLREATEE---LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFA-HDAAMLLGLA  131 (251)
T ss_pred             cchhHHHHHHHHHhcChhHHHHHHHHH---HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccC-CCHHHHHHHH
Confidence            334444555555555555544433322   223577777777888888888888888888888764444 7777777888


Q ss_pred             HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860          181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM  260 (417)
Q Consensus       181 ~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  260 (417)
                      ++....+++..|...++.+-+....+-.||.  .-.+-+.+...|+        .+.|+.-|+.....-  |+...---.
T Consensus       132 ~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~--~Ll~aR~laa~g~--------~a~Aesafe~a~~~y--pg~~ar~~Y  199 (251)
T COG4700         132 QAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG--HLLFARTLAAQGK--------YADAESAFEVAISYY--PGPQARIYY  199 (251)
T ss_pred             HHHHhhccHHHHHHHHHHHhhcCCccCCCCc--hHHHHHHHHhcCC--------chhHHHHHHHHHHhC--CCHHHHHHH
Confidence            8888888888888888888776333334443  3456677777888        788888888887764  443333333


Q ss_pred             HHHHHhcCCHHHHHHHHHHh
Q 014860          261 IKGYILSNHVNDALRIFHQM  280 (417)
Q Consensus       261 i~~~~~~g~~~~a~~~~~~m  280 (417)
                      -..+.+.|+.+++..-+..+
T Consensus       200 ~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         200 AEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHHhcchhHHHHHHHHH
Confidence            34456667666555444333

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.33  E-value=0.018  Score=39.13  Aligned_cols=65  Identities=9%  Similarity=0.095  Sum_probs=54.3

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHhHhC
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR-KLSRAVYVFKYMKNS  202 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~  202 (417)
                      +...|..+...+...|++++|...|++..+...  .+...|..+..+|.+.| ++++|++.|+...+.
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p--~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l   67 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDP--NNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL   67 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHST--THHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence            466788888888899999999999999988764  56788888889999998 699999998887653

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.33  E-value=0.16  Score=44.81  Aligned_cols=125  Identities=10%  Similarity=0.064  Sum_probs=97.1

Q ss_pred             hHHHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH---ccCChhHHHHHHHHHH
Q 014860           89 TQFRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLG---AAKMYQEMDDVVNQML  164 (417)
Q Consensus        89 ~~~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~~~~~a~~~~~~m~  164 (417)
                      ..++..+...|.. ..|..|.++|...++...|..-|....+..|  +++..+..+..++.   ...+..++.++++++.
T Consensus       143 a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al  220 (287)
T COG4235         143 ARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQAL  220 (287)
T ss_pred             HHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHH
Confidence            3445566666654 6899999999999999999999999987764  56666655555543   4447788999999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHH
Q 014860          165 ATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFL  222 (417)
Q Consensus       165 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~  222 (417)
                      +.+.  .|+..-..|...+...|++.+|...|+.|.+.     -|....+..+|..-.
T Consensus       221 ~~D~--~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~-----lp~~~~rr~~ie~~i  271 (287)
T COG4235         221 ALDP--ANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL-----LPADDPRRSLIERSI  271 (287)
T ss_pred             hcCC--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc-----CCCCCchHHHHHHHH
Confidence            9886  67888888899999999999999999999985     344455666665543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.32  E-value=0.025  Score=38.42  Aligned_cols=63  Identities=17%  Similarity=0.218  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHhHHHHHHHHHHH
Q 014860          325 SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRG-RAGEAMKLLKELQN  388 (417)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~  388 (417)
                      ..+|..+-..+...|++++|+..|.+..+.. +-+...|..+..+|...| ++++|++.+++..+
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            4455556666666666666666666666541 223345555555666666 46666666655544

...

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.32  E-value=0.037  Score=48.07  Aligned_cols=106  Identities=14%  Similarity=0.087  Sum_probs=69.0

Q ss_pred             CCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014860          251 EPDIFSLNSMIKGYIL-----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS  325 (417)
Q Consensus       251 ~p~~~~~~~li~~~~~-----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  325 (417)
                      +-|-..|-+.+..+..     .+.++-....++.|.+ +|+..|..+|+.||+.+-+..                +.|..
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~e-yGVerDl~vYk~LlnvfPKgk----------------fiP~n  126 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKE-YGVERDLDVYKGLLNVFPKGK----------------FIPQN  126 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHH-hcchhhHHHHHHHHHhCcccc----------------cccHH
Confidence            4566666666666643     3556666667777777 788888888887776654321                22221


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 014860          326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRA  376 (417)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  376 (417)
                       .+-...--|=++  -+=+.+++++|...|+.||..+-..|++++++.|..
T Consensus       127 -vfQ~~F~HYP~Q--Q~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p  174 (406)
T KOG3941|consen  127 -VFQKVFLHYPQQ--QNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP  174 (406)
T ss_pred             -HHHHHHhhCchh--hhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence             122222222222  233688999999999999999999999999988864

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=96.30  E-value=0.8  Score=41.33  Aligned_cols=158  Identities=13%  Similarity=0.196  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHH
Q 014860          189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI---EPDIFSLNSMIKGYI  265 (417)
Q Consensus       189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~  265 (417)
                      +++.+.+++.|++.   |++-+..+|-+........ +.... .....++.++|+.|++...   .++...+..++..  
T Consensus        78 ~~~~~~~y~~L~~~---gFk~~~y~~laA~~i~~~~-~~~~~-~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--  150 (297)
T PF13170_consen   78 FKEVLDIYEKLKEA---GFKRSEYLYLAALIILEEE-EKEDY-DEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--  150 (297)
T ss_pred             HHHHHHHHHHHHHh---ccCccChHHHHHHHHHHhc-ccccH-HHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--
Confidence            55677899999997   7888876666544444331 11111 2227889999999998643   3556667666654  


Q ss_pred             hcCC----HHHHHHHHHHhhhhCCCCCCHH-HHHHHHHHHHhc-CC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860          266 LSNH----VNDALRIFHQMGVVYNYLPNSF-SYDYLIHGLCAQ-GR--TKNARELCDEMKRKGFVPSSKSYNSLVSALAL  337 (417)
Q Consensus       266 ~~g~----~~~a~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~-g~--~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~  337 (417)
                      ..++    .+.++.+|+.+.+ .|+..+-. -+.+-|-+++.. ..  ...+.++++.+.+.|+++....|..+--...-
T Consensus       151 ~~~~~e~l~~~~E~~Y~~L~~-~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall  229 (297)
T PF13170_consen  151 TSEDVEELAERMEQCYQKLAD-AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALL  229 (297)
T ss_pred             ccccHHHHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhc
Confidence            3333    3567788888887 67665433 233333333322 22  45788999999999999888776655333222


Q ss_pred             cCC----HHHHHHHHHHHHHc
Q 014860          338 NGE----VEETVKNLWEMIEK  354 (417)
Q Consensus       338 ~g~----~~~A~~~~~~m~~~  354 (417)
                      .+.    ++...++.+.+.+.
T Consensus       230 ~~~~~~~~~~i~ev~~~L~~~  250 (297)
T PF13170_consen  230 EDPEEKIVEEIKEVIDELKEQ  250 (297)
T ss_pred             CCchHHHHHHHHHHHHHHhhC
Confidence            222    33444455555544

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.29  E-value=1.4  Score=43.91  Aligned_cols=262  Identities=13%  Similarity=0.084  Sum_probs=152.6

Q ss_pred             CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCC----CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC-----
Q 014860           99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRF----RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF-----  169 (417)
Q Consensus        99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-----  169 (417)
                      .+.++|..+.+..-..|+++.|..+.+.-. +.+.    -.+...+...+.-+...|+.+....++-.+...-..     
T Consensus       505 ~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~-~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~  583 (829)
T KOG2280|consen  505 TPGISYAAIARRAYQEGRFELARKLLELEP-RSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFM  583 (829)
T ss_pred             CCceeHHHHHHHHHhcCcHHHHHHHHhcCC-CccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHH
Confidence            455788888888888999999999887542 2211    113344555666677888888888877777664211     


Q ss_pred             -----CCCHHHHHHHHHH--------HHHhCCHHHHHHHHH--HhHhCC-CCCCCCCHHHHHHHHHHHHhcCCccchhhh
Q 014860          170 -----CGTEALYNTIIYF--------FAEARKLSRAVYVFK--YMKNSR-NLECRPSIRSYNILFTAFLSRGKNTYINHV  233 (417)
Q Consensus       170 -----~~~~~~~~~li~~--------~~~~g~~~~a~~~~~--~m~~~~-~~g~~p~~~~~~~li~~~~~~g~~~~~~~~  233 (417)
                           +.....|.-+++-        +.+.++-..+..-|.  ...... ..|..|+.   ...-..+.+....+...+.
T Consensus       584 ~l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka  660 (829)
T KOG2280|consen  584 TLRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKA  660 (829)
T ss_pred             HHHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHH
Confidence                 0111122222210        001111111111111  000000 00112222   2223333333321111111


Q ss_pred             --hHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860          234 --YMETIRCLFKQMVN-DGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNAR  310 (417)
Q Consensus       234 --~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~  310 (417)
                        ...+-+++.+.+.. .|..-..-+.+--+.-+...|+..+|.++-.+.+-     ||-..|-.=+.+++..+++++-+
T Consensus       661 ~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fki-----pdKr~~wLk~~aLa~~~kweeLe  735 (829)
T KOG2280|consen  661 LEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFKI-----PDKRLWWLKLTALADIKKWEELE  735 (829)
T ss_pred             HHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcCC-----cchhhHHHHHHHHHhhhhHHHHH
Confidence              01222233333332 23334445566667778889999999999988876     99999999999999999999888


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 014860          311 ELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLK  384 (417)
Q Consensus       311 ~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~  384 (417)
                      ++-+.++.      +.-|.-.+.+|.+.|+.++|.+++.+....         .-.+.+|.+.|++.+|.++--
T Consensus       736 kfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  736 KFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             HHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence            87766552      344777889999999999999988654321         157788999999998887643

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.25  E-value=0.5  Score=45.84  Aligned_cols=105  Identities=22%  Similarity=0.265  Sum_probs=49.6

Q ss_pred             HHHHHhcCCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHH-----HHHHHHHHHc----cCChhHHHHHHH
Q 014860           91 FRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDAST-----YHIMTRKLGA----AKMYQEMDDVVN  161 (417)
Q Consensus        91 ~~~~l~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~-----~~~li~~~~~----~~~~~~a~~~~~  161 (417)
                      |+-.++-+|+.  ...+++.+.-.||-+..++.+....+..++.-..-+     |+.++..+..    ....+.|.++++
T Consensus       180 f~L~lSlLPp~--~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~  257 (468)
T PF10300_consen  180 FNLVLSLLPPK--VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLE  257 (468)
T ss_pred             HHHHHHhCCHH--HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHH
Confidence            33444445442  334556666666666666666666544443322222     2222222221    334555555555


Q ss_pred             HHHcCCCCCCCHHHHHHH-HHHHHHhCCHHHHHHHHHHhH
Q 014860          162 QMLATPSFCGTEALYNTI-IYFFAEARKLSRAVYVFKYMK  200 (417)
Q Consensus       162 ~m~~~~~~~~~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~  200 (417)
                      .+.+.-   |+...|... .+.+...|++++|++.|+...
T Consensus       258 ~~~~~y---P~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~  294 (468)
T PF10300_consen  258 EMLKRY---PNSALFLFFEGRLERLKGNLEEAIESFERAI  294 (468)
T ss_pred             HHHHhC---CCcHHHHHHHHHHHHHhcCHHHHHHHHHHhc
Confidence            555543   343333322 234444555666666655433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.18  E-value=0.13  Score=45.55  Aligned_cols=104  Identities=7%  Similarity=0.030  Sum_probs=76.3

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG-TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN  215 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~  215 (417)
                      ...|...+..+.+.|++++|...|+.+.+..+..+ ....+-.+...|...|++++|...|+.+.+.- .+-+.....+-
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~  221 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHH
Confidence            45566666666677999999999999988764211 13577788889999999999999999998651 01122245555


Q ss_pred             HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860          216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG  249 (417)
Q Consensus       216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g  249 (417)
                      .+...+...|+        .++|.++|+++.+..
T Consensus       222 klg~~~~~~g~--------~~~A~~~~~~vi~~y  247 (263)
T PRK10803        222 KVGVIMQDKGD--------TAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHHHHcCC--------HHHHHHHHHHHHHHC
Confidence            56677778899        999999999988763

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.18  E-value=0.088  Score=45.84  Aligned_cols=88  Identities=18%  Similarity=0.235  Sum_probs=53.6

Q ss_pred             CCHHHHHHHHHHHHhc-----CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---------------
Q 014860          209 PSIRSYNILFTAFLSR-----GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN---------------  268 (417)
Q Consensus       209 p~~~~~~~li~~~~~~-----g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------------  268 (417)
                      .|-.+|-+++..+...     +.        ++-....++.|.+-|++-|..+|+.||+.+-+..               
T Consensus        65 RdK~sfl~~V~~F~E~sVr~R~H--------veFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP  136 (406)
T KOG3941|consen   65 RDKDSFLAAVATFKEKSVRGRTH--------VEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYP  136 (406)
T ss_pred             ccHHHHHHHHHHHHHhhhcccch--------HHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCc
Confidence            3555566655555433     22        4555555666666777777777776666554321               


Q ss_pred             -CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC
Q 014860          269 -HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR  305 (417)
Q Consensus       269 -~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~  305 (417)
                       +-+-+.+++++|+. .|+.||..+-..|++++++.+-
T Consensus       137 ~QQ~C~I~vLeqME~-hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  137 QQQNCAIKVLEQMEW-HGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             hhhhHHHHHHHHHHH-cCCCCchHHHHHHHHHhccccc
Confidence             12446677777776 6777777777777777766654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.15  E-value=0.37  Score=46.12  Aligned_cols=131  Identities=17%  Similarity=0.128  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD  253 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~  253 (417)
                      .-.+.+++.+-+.|..+.|+++-.+-.               .-.....+.|+        ++.|.++-++      ..+
T Consensus       296 ~~~~~i~~fL~~~G~~e~AL~~~~D~~---------------~rFeLAl~lg~--------L~~A~~~a~~------~~~  346 (443)
T PF04053_consen  296 DQGQSIARFLEKKGYPELALQFVTDPD---------------HRFELALQLGN--------LDIALEIAKE------LDD  346 (443)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHSS-HH---------------HHHHHHHHCT---------HHHHHHHCCC------CST
T ss_pred             hHHHHHHHHHHHCCCHHHHHhhcCChH---------------HHhHHHHhcCC--------HHHHHHHHHh------cCc
Confidence            445556666666666666665533322               22333455555        5555544332      224


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS  333 (417)
Q Consensus       254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~  333 (417)
                      ...|..|-+...+.|+++.|++.|.+...          |..|+-.|.-.|+.+...++.+.....|-      +|....
T Consensus       347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~------~n~af~  410 (443)
T PF04053_consen  347 PEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEERGD------INIAFQ  410 (443)
T ss_dssp             HHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHccC------HHHHHH
Confidence            55666666666666666666666665554          44555555566666555555555554431      444444


Q ss_pred             HHHhcCCHHHHHHHHH
Q 014860          334 ALALNGEVEETVKNLW  349 (417)
Q Consensus       334 ~~~~~g~~~~A~~~~~  349 (417)
                      ++.-.|++++..+++.
T Consensus       411 ~~~~lgd~~~cv~lL~  426 (443)
T PF04053_consen  411 AALLLGDVEECVDLLI  426 (443)
T ss_dssp             HHHHHT-HHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHH
Confidence            4445555555555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.13  E-value=0.43  Score=36.68  Aligned_cols=135  Identities=16%  Similarity=0.188  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860          235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD  314 (417)
Q Consensus       235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~  314 (417)
                      .++..++..+....   -+..-+|-+|--....-+-+-..++++.+.+-+.+.+-. -.-.++..|+..|.         
T Consensus        18 V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C~-NlKrVi~C~~~~n~---------   84 (161)
T PF09205_consen   18 VKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKCG-NLKRVIECYAKRNK---------   84 (161)
T ss_dssp             HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG-S--THHHHHHHHHTT----------
T ss_pred             HHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhhc-chHHHHHHHHHhcc---------
Confidence            77777777777653   244455555555555556666677777776533332210 01122333333222         


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 014860          315 EMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI  392 (417)
Q Consensus       315 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p  392 (417)
                               +...+...+..+...|+-|.-.+++.++.+ .-.+++...-.+..||.+.|+..++.+++.+.-+.|++
T Consensus        85 ---------~se~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   85 ---------LSEYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             -----------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             ---------hHHHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence                     333455566677777777777777777664 23466666667777777777777777777777777753

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.03  E-value=0.43  Score=42.18  Aligned_cols=102  Identities=11%  Similarity=0.072  Sum_probs=52.4

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC
Q 014860          171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI  250 (417)
Q Consensus       171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~  250 (417)
                      .|...|-.|...|...|+++.|..-|....+..    .++...+..+..++....+...     ..++..+|+++.... 
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~----g~n~~~~~g~aeaL~~~a~~~~-----ta~a~~ll~~al~~D-  223 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA----GDNPEILLGLAEALYYQAGQQM-----TAKARALLRQALALD-  223 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHhcCCcc-----cHHHHHHHHHHHhcC-
Confidence            455566666666666666666666666655541    2233344444444333322111     455555666655543 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860          251 EPDIFSLNSMIKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       251 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      +-|..+...|-..+...|++.+|...++.|.+
T Consensus       224 ~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~  255 (287)
T COG4235         224 PANIRALSLLAFAAFEQGDYAEAAAAWQMLLD  255 (287)
T ss_pred             CccHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence            23444444455555556666666666666544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.99  E-value=0.055  Score=37.17  Aligned_cols=56  Identities=11%  Similarity=0.065  Sum_probs=40.9

Q ss_pred             HHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860          145 RKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      ..+.+.+++++|.++++.+....+  .+...+.....++.+.|++++|.+.|+...+.
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDP--DDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCc--ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            456677777777777777777654  46667777777777777887777777777765

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.96  E-value=0.13  Score=45.36  Aligned_cols=101  Identities=24%  Similarity=0.235  Sum_probs=85.5

Q ss_pred             HHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHh
Q 014860          145 RKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLS  223 (417)
Q Consensus       145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~  223 (417)
                      +-+.+.+++++|.+.|.+.++..+  .|.+.|..-..+|++.|.++.|++=.+.....     .| -..+|..|-.+|..
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P--~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i-----Dp~yskay~RLG~A~~~  161 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDP--TNAVYYCNRAAAYSKLGEYEDAVKDCESALSI-----DPHYSKAYGRLGLAYLA  161 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCC--CcchHHHHHHHHHHHhcchHHHHHHHHHHHhc-----ChHHHHHHHHHHHHHHc
Confidence            356789999999999999999875  68889999999999999999999998888875     33 36789999999999


Q ss_pred             cCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          224 RGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK  262 (417)
Q Consensus       224 ~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  262 (417)
                      .|+        +++|++.|+...+.  .|+-.+|-.=+.
T Consensus       162 ~gk--------~~~A~~aykKaLel--dP~Ne~~K~nL~  190 (304)
T KOG0553|consen  162 LGK--------YEEAIEAYKKALEL--DPDNESYKSNLK  190 (304)
T ss_pred             cCc--------HHHHHHHHHhhhcc--CCCcHHHHHHHH
Confidence            999        99999999988765  687777655443

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.92  E-value=0.63  Score=36.75  Aligned_cols=44  Identities=7%  Similarity=0.072  Sum_probs=21.9

Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 014860          178 TIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG  225 (417)
Q Consensus       178 ~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g  225 (417)
                      .+|..+.+.+.......+++.+...   + ..+....|.++..|++..
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~---~-~~~~~~~~~li~ly~~~~   55 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKL---N-SENPALQTKLIELYAKYD   55 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHcc---C-ccchhHHHHHHHHHHHHC
Confidence            4444454555555555555555543   2 234445555555555443

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.90  E-value=1.2  Score=39.90  Aligned_cols=228  Identities=11%  Similarity=0.030  Sum_probs=126.0

Q ss_pred             ccCChhHHHHHHHHHHcCC-CCCCCH------HHHHHHHHHHHHhCCHHHHHHHHHHhHhC----C-CCCCCCC-----H
Q 014860          149 AAKMYQEMDDVVNQMLATP-SFCGTE------ALYNTIIYFFAEARKLSRAVYVFKYMKNS----R-NLECRPS-----I  211 (417)
Q Consensus       149 ~~~~~~~a~~~~~~m~~~~-~~~~~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~g~~p~-----~  211 (417)
                      +.|+++.|..++.+..... ...|+.      ..||.-...+.+..+++.|...+++..+.    + .....|+     .
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            4566666666666655543 211221      23333333333333776666655544332    1 0022333     3


Q ss_pred             HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860          212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF  291 (417)
Q Consensus       212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  291 (417)
                      .+...++.+|...+....     .++|..+++.+..... -...++-.-+..+.+.++.+.+.+++.+|....  .-...
T Consensus        85 ~iL~~La~~~l~~~~~~~-----~~ka~~~l~~l~~e~~-~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~--~~~e~  156 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYES-----VEKALNALRLLESEYG-NKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV--DHSES  156 (278)
T ss_pred             HHHHHHHHHHHcCCChHH-----HHHHHHHHHHHHHhCC-CCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc--ccccc
Confidence            467778888888877333     7778888888865532 224455566777777899999999999998732  22334


Q ss_pred             HHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHH-HHH-HHHH---HHHhcC------CHHHHHHHHHHHHHc-CC
Q 014860          292 SYDYLIHGL---CAQGRTKNARELCDEMKRKGFVPSSK-SYN-SLVS---ALALNG------EVEETVKNLWEMIEK-QR  356 (417)
Q Consensus       292 ~~~~li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~-~li~---~~~~~g------~~~~A~~~~~~m~~~-g~  356 (417)
                      .+..++..+   .... ...|...+..+....+.|... ... .++.   .....+      .++...++++...+. +.
T Consensus       157 ~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~  235 (278)
T PF08631_consen  157 NFDSILHHIKQLAEKS-PELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGK  235 (278)
T ss_pred             hHHHHHHHHHHHHhhC-cHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcC
Confidence            555555554   4433 345666666666555555553 111 1111   111211      155555566644433 44


Q ss_pred             CCCHHHHHHHHH-------HHHHcCCHhHHHHHHHH
Q 014860          357 PVDFITYRTVLD-------EICRRGRAGEAMKLLKE  385 (417)
Q Consensus       357 ~p~~~~~~~li~-------~~~~~g~~~~A~~~~~~  385 (417)
                      +.+..+-.++..       .+.+.+++++|.+.|+-
T Consensus       236 ~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~  271 (278)
T PF08631_consen  236 QLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL  271 (278)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence            555555444433       35678899999999874

It is also involved in sporulation [].

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.88  E-value=0.03  Score=39.17  Aligned_cols=60  Identities=18%  Similarity=0.204  Sum_probs=30.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860          327 SYNSLVSALALNGEVEETVKNLWEMIEK----QR-PVD-FITYRTVLDEICRRGRAGEAMKLLKEL  386 (417)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m  386 (417)
                      +|+.+-..|...|++++|+..|++..+.    |- .|+ ..++..+...|...|++++|++.+++.
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a   72 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA   72 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            4555555555666666665555554432    11 111 234555555566666666666666554

...

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.88  E-value=1.5  Score=40.70  Aligned_cols=86  Identities=8%  Similarity=0.077  Sum_probs=58.7

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHh---cCCccchhhhhHHHHHHHHHHHHHC
Q 014860          172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS---RGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~---~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      +..+...++-.|....+++..+++.+.+..-+...+.-....--...-++.+   .|+        .++|++++..+...
T Consensus       140 s~div~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gd--------re~Al~il~~~l~~  211 (374)
T PF13281_consen  140 SPDIVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGD--------REKALQILLPVLES  211 (374)
T ss_pred             ChhHHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCC--------HHHHHHHHHHHHhc
Confidence            3444456666799999999999999999985321112222222234445556   677        99999999996666


Q ss_pred             CCCCCHHHHHHHHHHHH
Q 014860          249 GIEPDIFSLNSMIKGYI  265 (417)
Q Consensus       249 g~~p~~~~~~~li~~~~  265 (417)
                      .-.++..+|..+-..|-
T Consensus       212 ~~~~~~d~~gL~GRIyK  228 (374)
T PF13281_consen  212 DENPDPDTLGLLGRIYK  228 (374)
T ss_pred             cCCCChHHHHHHHHHHH
Confidence            55788888877776664

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.86  E-value=1.1  Score=38.97  Aligned_cols=144  Identities=13%  Similarity=0.075  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD  253 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~  253 (417)
                      .+.+.+++.+.-.|.+.-...++.+..+.   .-+.+......+.+.-.+.||        .+.|...|++..+..-+.|
T Consensus       178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~---~~e~~p~L~s~Lgr~~MQ~GD--------~k~a~~yf~~vek~~~kL~  246 (366)
T KOG2796|consen  178 RVMYSMANCLLGMKEYVLSVDAYHSVIKY---YPEQEPQLLSGLGRISMQIGD--------IKTAEKYFQDVEKVTQKLD  246 (366)
T ss_pred             HHHHHHHHHHhcchhhhhhHHHHHHHHHh---CCcccHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHHhhhh
Confidence            45667778788888898899999998886   445577778888899999999        9999999998876555666


Q ss_pred             HHHHHHHH-----HHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014860          254 IFSLNSMI-----KGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY  328 (417)
Q Consensus       254 ~~~~~~li-----~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~  328 (417)
                      ..+.+.++     ..|.-.+++..|...++++....+  .|...-|.=.-+..-.|+..+|.+.++.|...  .|...+-
T Consensus       247 ~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~--~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~  322 (366)
T KOG2796|consen  247 GLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDP--RNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLH  322 (366)
T ss_pred             ccchhHHHHhhhhhheecccchHHHHHHHhhccccCC--CchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchh
Confidence            66665554     335556788888888888865322  33333343333344467899999999999875  4555444


Q ss_pred             HHHH
Q 014860          329 NSLV  332 (417)
Q Consensus       329 ~~li  332 (417)
                      ++++
T Consensus       323 es~~  326 (366)
T KOG2796|consen  323 ESVL  326 (366)
T ss_pred             hhHH
Confidence            4443

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.85  E-value=0.27  Score=46.29  Aligned_cols=62  Identities=18%  Similarity=0.152  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS----KSYNSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       290 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      ...|+.+-.+|...|++++|+..|++..+.  .|+.    .+|..+..+|...|+.++|++.+++..+
T Consensus        75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         75 AEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444444455555555555555444432  2221    2344444555555555555555544444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=95.84  E-value=0.99  Score=38.35  Aligned_cols=175  Identities=11%  Similarity=0.076  Sum_probs=90.6

Q ss_pred             HHHHccCChhHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH--HHHHHHHHHH
Q 014860          145 RKLGAAKMYQEMDDVVNQMLATPSFCG-TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSI--RSYNILFTAF  221 (417)
Q Consensus       145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~--~~~~~li~~~  221 (417)
                      ..+...|++.+|.+.|+.+....+..+ -....-.++.++.+.|+++.|...|++..+.     .|+.  ..+...+.+.
T Consensus        13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~-----yP~~~~~~~A~Y~~g~   87 (203)
T PF13525_consen   13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL-----YPNSPKADYALYMLGL   87 (203)
T ss_dssp             HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------TT-TTHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCCcchhhHHHHHHH
Confidence            345577888888888888877543212 2344556677888888888888888887765     2321  1233333333


Q ss_pred             HhcCC--cc---chhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHH
Q 014860          222 LSRGK--NT---YINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYL  296 (417)
Q Consensus       222 ~~~g~--~~---~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  296 (417)
                      +.-..  ..   .-+.....+|...|               ..+|.-|=.+.-..+|...+..+...    .-. .--.+
T Consensus        88 ~~~~~~~~~~~~~~D~~~~~~A~~~~---------------~~li~~yP~S~y~~~A~~~l~~l~~~----la~-~e~~i  147 (203)
T PF13525_consen   88 SYYKQIPGILRSDRDQTSTRKAIEEF---------------EELIKRYPNSEYAEEAKKRLAELRNR----LAE-HELYI  147 (203)
T ss_dssp             HHHHHHHHHH-TT---HHHHHHHHHH---------------HHHHHH-TTSTTHHHHHHHHHHHHHH----HHH-HHHHH
T ss_pred             HHHHhCccchhcccChHHHHHHHHHH---------------HHHHHHCcCchHHHHHHHHHHHHHHH----HHH-HHHHH
Confidence            22111  00   00000123333333               34444454555556665555555431    111 11224


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860          297 IHGLCAQGRTKNARELCDEMKRK--GFVPSSKSYNSLVSALALNGEVEET  344 (417)
Q Consensus       297 i~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A  344 (417)
                      ..-|.+.|.+..|..-++.+.+.  +..-.....-.++.+|.+.|..+.+
T Consensus       148 a~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a  197 (203)
T PF13525_consen  148 ARFYYKRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAA  197 (203)
T ss_dssp             HHHHHCTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred             HHHHHHcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHH
Confidence            55677788888888888777765  1111234456677777777777644

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=95.81  E-value=0.81  Score=37.17  Aligned_cols=139  Identities=12%  Similarity=0.196  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHH
Q 014860          235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG--RTKNAREL  312 (417)
Q Consensus       235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l  312 (417)
                      ..-..+.++.+.+.|++|+...+..+|+.+.+.|++.....++    . +++-+|.......+-.+....  -.+-|.+.
T Consensus        10 i~vllEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qll----q-~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDM   84 (167)
T PF07035_consen   10 IAVLLEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLL----Q-YHVIPDSKPLACQLLSLGNQYPPAYQLGLDM   84 (167)
T ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----h-hcccCCcHHHHHHHHHhHccChHHHHHHHHH
Confidence            3345667777888999999999999999999999976655544    4 555677776666654444322  13445555


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          313 CDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       313 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      +.++..        .+..+++.+...|++-+|+++.+.....    +......++++-.+.++...-..+++-..+++
T Consensus        85 LkRL~~--------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n  150 (167)
T PF07035_consen   85 LKRLGT--------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEERN  150 (167)
T ss_pred             HHHhhh--------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            555543        3677888899999999999998775432    22233557778788888777777777666654

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=95.75  E-value=2.2  Score=41.80  Aligned_cols=92  Identities=18%  Similarity=0.117  Sum_probs=62.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------
Q 014860          289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFI-------  361 (417)
Q Consensus       289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-------  361 (417)
                      +..+...+...+.+...+..|-++|..|-+         ..+++......++|++|..+-+...+.  .||+.       
T Consensus       746 ere~l~~~a~ylk~l~~~gLAaeIF~k~gD---------~ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwL  814 (1081)
T KOG1538|consen  746 EREPLLLCATYLKKLDSPGLAAEIFLKMGD---------LKSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWL  814 (1081)
T ss_pred             hhhHHHHHHHHHhhccccchHHHHHHHhcc---------HHHHhhheeecccchHhHhhhhhCccc--cccccchHHHHh
Confidence            344455555555566667778888887764         245677778888888888877765543  34432       


Q ss_pred             ----HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860          362 ----TYRTVLDEICRRGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       362 ----~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  391 (417)
                          -|.-.-.+|.++|+-.||.++++++.+..+
T Consensus       815 AE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnnav  848 (1081)
T KOG1538|consen  815 AENDRFEEAQKAFHKAGRQREAVQVLEQLTNNAV  848 (1081)
T ss_pred             hhhhhHHHHHHHHHHhcchHHHHHHHHHhhhhhh
Confidence                133344578889999999999998877654

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.70  E-value=0.64  Score=43.43  Aligned_cols=146  Identities=15%  Similarity=0.218  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC
Q 014860          211 IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG-IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN  289 (417)
Q Consensus       211 ~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~  289 (417)
                      ..+|...|....+..-        ++.|..+|-+..+.| +.+++.+++++|.-++ .|+...|.++|+-=....   ||
T Consensus       397 t~v~C~~~N~v~r~~G--------l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f---~d  464 (660)
T COG5107         397 TFVFCVHLNYVLRKRG--------LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKF---PD  464 (660)
T ss_pred             hhHHHHHHHHHHHHhh--------HHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhC---CC
Confidence            4567778888777777        899999999999988 5788999999998766 567888999998654422   44


Q ss_pred             HHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014860          290 SFSY-DYLIHGLCAQGRTKNARELCDEMKRKGFVPS--SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTV  366 (417)
Q Consensus       290 ~~~~-~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  366 (417)
                      ...| +-.+.-+.+.++-+.|..+|+..... +..+  ...|..+|.--..-|++..+..+=+.|.+.  -|...+....
T Consensus       465 ~~~y~~kyl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF  541 (660)
T COG5107         465 STLYKEKYLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVF  541 (660)
T ss_pred             chHHHHHHHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHH
Confidence            4444 45667778889999999999854432 2223  457899999888999998888877777764  4444444444


Q ss_pred             HHHHH
Q 014860          367 LDEIC  371 (417)
Q Consensus       367 i~~~~  371 (417)
                      ..-|.
T Consensus       542 ~Sry~  546 (660)
T COG5107         542 TSRYA  546 (660)
T ss_pred             HHHHh
Confidence            44443

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.69  E-value=1.5  Score=39.53  Aligned_cols=153  Identities=11%  Similarity=0.228  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cC----CHHHHHHHHHHhhhhCCC--CCCHHHHHHHHHHHHhcCC-
Q 014860          235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYIL--SN----HVNDALRIFHQMGVVYNY--LPNSFSYDYLIHGLCAQGR-  305 (417)
Q Consensus       235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g----~~~~a~~~~~~m~~~~~~--~~~~~~~~~li~~~~~~g~-  305 (417)
                      +++...+++.|.+.|+.-+..+|-+.......  ..    ...+|..+|+.|++.+.+  .++-.++..|+..  ..++ 
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            78888999999999999998888764333333  22    356799999999986543  3455566666544  3333 


Q ss_pred             ---HHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHh-cCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHcCC--
Q 014860          306 ---TKNARELCDEMKRKGFVPSSK-SYNSLVSALAL-NGE--VEETVKNLWEMIEKQRPVDFITYRTVLDE-ICRRGR--  375 (417)
Q Consensus       306 ---~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~-~g~--~~~A~~~~~~m~~~g~~p~~~~~~~li~~-~~~~g~--  375 (417)
                         .+.++..|+.+.+.|+..+-. -+.+-+-+++. ...  +.++.++++.+.+.|+++....|..+.-. +...+.  
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~  235 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK  235 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence               456788899999888765432 33333333332 222  45789999999999999888887655332 222222  


Q ss_pred             -HhHHHHHHHHHHHC
Q 014860          376 -AGEAMKLLKELQNK  389 (417)
Q Consensus       376 -~~~A~~~~~~m~~~  389 (417)
                       .++..++.+.+.+.
T Consensus       236 ~~~~i~ev~~~L~~~  250 (297)
T PF13170_consen  236 IVEEIKEVIDELKEQ  250 (297)
T ss_pred             HHHHHHHHHHHHhhC
Confidence             44445555555544

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=95.69  E-value=0.039  Score=37.98  Aligned_cols=59  Identities=20%  Similarity=0.148  Sum_probs=51.5

Q ss_pred             HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCC
Q 014860          108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPS  168 (417)
Q Consensus       108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  168 (417)
                      -+.+.+.++++.|+++++.+.+..  +.+...+......+...|++++|.+.++...+..+
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p   60 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELD--PDDPELWLQRARCLFQLGRYEEALEDLERALELSP   60 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC--cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence            356788999999999999998654  56888888889999999999999999999998774

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.66  E-value=0.91  Score=43.53  Aligned_cols=158  Identities=14%  Similarity=0.081  Sum_probs=109.0

Q ss_pred             HHHHHhCCHHHHHHHHH--HhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          181 YFFAEARKLSRAVYVFK--YMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN  258 (417)
Q Consensus       181 ~~~~~~g~~~~a~~~~~--~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  258 (417)
                      ....-.++++++.++.+  ++...     -| ..-.+.++.-+-+.|.        .+.|+++-.+-.            
T Consensus       269 k~av~~~d~~~v~~~i~~~~ll~~-----i~-~~~~~~i~~fL~~~G~--------~e~AL~~~~D~~------------  322 (443)
T PF04053_consen  269 KTAVLRGDFEEVLRMIAASNLLPN-----IP-KDQGQSIARFLEKKGY--------PELALQFVTDPD------------  322 (443)
T ss_dssp             HHHHHTT-HHH-----HHHHTGGG--------HHHHHHHHHHHHHTT---------HHHHHHHSS-HH------------
T ss_pred             HHHHHcCChhhhhhhhhhhhhccc-----CC-hhHHHHHHHHHHHCCC--------HHHHHhhcCChH------------
Confidence            34455788888777775  22221     12 4557888888889998        999988764322            


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860          259 SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN  338 (417)
Q Consensus       259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~  338 (417)
                      .-.+...++|+++.|.++.++.       .+...|..|-+...+.|+++.|++.|.+..+         |..|+-.|.-.
T Consensus       323 ~rFeLAl~lg~L~~A~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~  386 (443)
T PF04053_consen  323 HRFELALQLGNLDIALEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSST  386 (443)
T ss_dssp             HHHHHHHHCT-HHHHHHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHC
T ss_pred             HHhHHHHhcCCHHHHHHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHh
Confidence            3455677899999998876555       4677999999999999999999999998664         77888889999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860          339 GEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKEL  386 (417)
Q Consensus       339 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  386 (417)
                      |+.++..++.+.....|.      ++....++.-.|+.++..+++.+-
T Consensus       387 g~~~~L~kl~~~a~~~~~------~n~af~~~~~lgd~~~cv~lL~~~  428 (443)
T PF04053_consen  387 GDREKLSKLAKIAEERGD------INIAFQAALLLGDVEECVDLLIET  428 (443)
T ss_dssp             T-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHccC------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence            999998888887777652      556666667778888887776553

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=95.55  E-value=0.048  Score=38.09  Aligned_cols=65  Identities=14%  Similarity=0.114  Sum_probs=46.4

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcC----CCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLAT----PSFCGT-EALYNTIIYFFAEARKLSRAVYVFKYMKN  201 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  201 (417)
                      ..+|+.+...+...|++++|++.+++..+.    |...++ ..+++.+..+|...|++++|++.+++..+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            356677777888888888888888777753    211122 56778888888888999999888887654

...

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=95.50  E-value=0.27  Score=45.26  Aligned_cols=279  Identities=13%  Similarity=0.029  Sum_probs=164.9

Q ss_pred             HHHHhccCChhHHHHHHHHhhcCCCCCCCHH----HHHHHHHHHHccCChhHHHHHHHHHHc----CCCCCCCHHHHHHH
Q 014860          108 CNVMTLQEDPLVCLELFNWASKQPRFRHDAS----TYHIMTRKLGAAKMYQEMDDVVNQMLA----TPSFCGTEALYNTI  179 (417)
Q Consensus       108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~----~~~~~~~~~~~~~l  179 (417)
                      .+-+++.|+...-+.+|+.+.+..  .-|..    .|..+-++|.-.+++++|.+.+..=+-    .|...........|
T Consensus        24 GERLck~gdcraGv~ff~aA~qvG--TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNL  101 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVG--TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL  101 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhc--chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence            345789999999999999987533  23333    455566677778899999886542111    11110122233334


Q ss_pred             HHHHHHhCCHHHHHHHHHHhHh-CCCCCC-CCCHHHHHHHHHHHHhcCCcc------------chhhhhHHHHHHHHHHH
Q 014860          180 IYFFAEARKLSRAVYVFKYMKN-SRNLEC-RPSIRSYNILFTAFLSRGKNT------------YINHVYMETIRCLFKQM  245 (417)
Q Consensus       180 i~~~~~~g~~~~a~~~~~~m~~-~~~~g~-~p~~~~~~~li~~~~~~g~~~------------~~~~~~~~~a~~~~~~m  245 (417)
                      -..+--.|.+++|+-.-.+-.. .+.+|- ......+-.+-..|...|+..            .-....++.|.+.|.+=
T Consensus       102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN  181 (639)
T KOG1130|consen  102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN  181 (639)
T ss_pred             cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence            4444455666666443221110 000010 122345556777777776610            00111256666666542


Q ss_pred             H----HCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhh---hhCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860          246 V----NDGI-EPDIFSLNSMIKGYILSNHVNDALRIFHQMG---VVYNYL-PNSFSYDYLIHGLCAQGRTKNARELCDEM  316 (417)
Q Consensus       246 ~----~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~---~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m  316 (417)
                      .    +.|- -.--..|..|-..|.-.|+++.|....+.-.   +.+|-. .-...+..+-+++.-.|+++.|.+.|+.-
T Consensus       182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t  261 (639)
T KOG1130|consen  182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT  261 (639)
T ss_pred             HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence            2    2221 0122456666666777889998887655321   113322 23456778888999999999998888764


Q ss_pred             HH----CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860          317 KR----KGF-VPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-----QRPVDFITYRTVLDEICRRGRAGEAMKLLKEL  386 (417)
Q Consensus       317 ~~----~g~-~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  386 (417)
                      ..    .|- .....+.-+|-..|.-..++++|+.++.+=..-     ...-....|..|-.+|...|..++|+.+.+.-
T Consensus       262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h  341 (639)
T KOG1130|consen  262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH  341 (639)
T ss_pred             HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            32    221 223456677888888888999999888753321     22335678899999999999999999887765


Q ss_pred             HH
Q 014860          387 QN  388 (417)
Q Consensus       387 ~~  388 (417)
                      ++
T Consensus       342 l~  343 (639)
T KOG1130|consen  342 LR  343 (639)
T ss_pred             HH
Confidence            44

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=95.21  E-value=2.6  Score=39.14  Aligned_cols=167  Identities=14%  Similarity=-0.002  Sum_probs=104.9

Q ss_pred             HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHhhhhCCCCC
Q 014860          215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG---IEPDIFSLNSMIKGYIL---SNHVNDALRIFHQMGVVYNYLP  288 (417)
Q Consensus       215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~  288 (417)
                      -.++-+|....+        ++...++.+.|...-   +.-...+--...-++-+   .|+.++|.+++..+.. ..-.+
T Consensus       145 ~~lllSyRdiqd--------ydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~-~~~~~  215 (374)
T PF13281_consen  145 INLLLSYRDIQD--------YDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLE-SDENP  215 (374)
T ss_pred             HHHHHHhhhhhh--------HHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHh-ccCCC
Confidence            355556888888        999999999998751   11122233344556666   8999999999999544 34557


Q ss_pred             CHHHHHHHHHHHHh---------cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-H---HHHHHHH---H-HH
Q 014860          289 NSFSYDYLIHGLCA---------QGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE-V---EETVKNL---W-EM  351 (417)
Q Consensus       289 ~~~~~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~-~---~~A~~~~---~-~m  351 (417)
                      +..+|..+...|-.         ....++|...|.+--+.  .||..+=-.+...+.-.|. .   .+..++-   . ..
T Consensus       216 ~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~ll  293 (374)
T PF13281_consen  216 DPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLL  293 (374)
T ss_pred             ChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHH
Confidence            77788777666542         22367788888766554  3454332222222222332 1   1222222   2 22


Q ss_pred             HHcCC---CCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 014860          352 IEKQR---PVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI  392 (417)
Q Consensus       352 ~~~g~---~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p  392 (417)
                      .++|.   ..+---+.+++.++.-.|+.++|.+..++|.....|
T Consensus       294 g~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  294 GRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             HhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence            23332   234445678899999999999999999999988654

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.14  E-value=0.77  Score=43.29  Aligned_cols=67  Identities=10%  Similarity=-0.055  Sum_probs=32.9

Q ss_pred             CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCH-HHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860          135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTE-ALYNTIIYFFAEARKLSRAVYVFKYMKN  201 (417)
Q Consensus       135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~  201 (417)
                      .+...++.+..+|...|++++|...+++.++.....+.. .+|..+..+|.+.|+.++|+..+++..+
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe  140 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR  140 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344455555555555555555555555554443210001 2355555555555555555555555544

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.92  E-value=1.5  Score=34.64  Aligned_cols=132  Identities=10%  Similarity=0.051  Sum_probs=78.1

Q ss_pred             CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH
Q 014860           99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT  178 (417)
Q Consensus        99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~  178 (417)
                      .+......++..+...+.+...+.+++++....  ..+...++.++..+++.+. ++..+.+..  .     .+......
T Consensus         5 ~~~~~~~~vv~~~~~~~~~~~l~~yLe~~~~~~--~~~~~~~~~li~ly~~~~~-~~ll~~l~~--~-----~~~yd~~~   74 (140)
T smart00299        5 SDPIDVSEVVELFEKRNLLEELIPYLESALKLN--SENPALQTKLIELYAKYDP-QKEIERLDN--K-----SNHYDIEK   74 (140)
T ss_pred             CCcCCHHHHHHHHHhCCcHHHHHHHHHHHHccC--ccchhHHHHHHHHHHHHCH-HHHHHHHHh--c-----cccCCHHH
Confidence            344566677777777777888888888876543  3567777777777776543 222233331  1     23344455


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc-CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR-GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL  257 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~-g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  257 (417)
                      +++.|.+.+.++++.-++..+...            ...+..+... ++        .+.|.+.+.+      .-+...|
T Consensus        75 ~~~~c~~~~l~~~~~~l~~k~~~~------------~~Al~~~l~~~~d--------~~~a~~~~~~------~~~~~lw  128 (140)
T smart00299       75 VGKLCEKAKLYEEAVELYKKDGNF------------KDAIVTLIEHLGN--------YEKAIEYFVK------QNNPELW  128 (140)
T ss_pred             HHHHHHHcCcHHHHHHHHHhhcCH------------HHHHHHHHHcccC--------HHHHHHHHHh------CCCHHHH
Confidence            777777777777777777766431            2233333333 56        6777666654      1245566


Q ss_pred             HHHHHHHHh
Q 014860          258 NSMIKGYIL  266 (417)
Q Consensus       258 ~~li~~~~~  266 (417)
                      ..++..+..
T Consensus       129 ~~~~~~~l~  137 (140)
T smart00299      129 AEVLKALLD  137 (140)
T ss_pred             HHHHHHHHc
Confidence            666665543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=94.90  E-value=4.5  Score=40.21  Aligned_cols=22  Identities=27%  Similarity=0.225  Sum_probs=14.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHhhh
Q 014860          261 IKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       261 i~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      |..+.+.|++-+|-+++.+|.+
T Consensus       930 Ie~~Rka~~~~daarll~qmae  951 (1189)
T KOG2041|consen  930 IEKDRKAGRHLDAARLLSQMAE  951 (1189)
T ss_pred             HHHhhhcccchhHHHHHHHHhH
Confidence            4456667777777777777743

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.70  E-value=2.6  Score=36.57  Aligned_cols=194  Identities=13%  Similarity=0.086  Sum_probs=110.7

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860          172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE  251 (417)
Q Consensus       172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~  251 (417)
                      -...|+.-+. -.+.|++++|.+.|+.+..+- .+-+-...+--.++-++-+.++        +++|+...++....-..
T Consensus        34 ~~~LY~~g~~-~L~~gn~~~A~~~fe~l~~~~-p~s~~~~qa~l~l~yA~Yk~~~--------y~~A~~~~drFi~lyP~  103 (254)
T COG4105          34 ASELYNEGLT-ELQKGNYEEAIKYFEALDSRH-PFSPYSEQAQLDLAYAYYKNGE--------YDLALAYIDRFIRLYPT  103 (254)
T ss_pred             HHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHhCCC
Confidence            3345554444 447899999999999998762 1223345666677888888998        99999999988765433


Q ss_pred             CCHHHHHHHHHHHHhc-------CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014860          252 PDIFSLNSMIKGYILS-------NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS  324 (417)
Q Consensus       252 p~~~~~~~li~~~~~~-------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  324 (417)
                      -...-|-..|.+.+.-       .+...+.+-+..+.+             +|.-|=...=...|..-+..+...    =
T Consensus       104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~-------------~i~ryPnS~Ya~dA~~~i~~~~d~----L  166 (254)
T COG4105         104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE-------------LVQRYPNSRYAPDAKARIVKLNDA----L  166 (254)
T ss_pred             CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHH-------------HHHHCCCCcchhhHHHHHHHHHHH----H
Confidence            3334555556555532       222233333333322             111111111122222222222211    0


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCCh
Q 014860          325 SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF---ITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDG  394 (417)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~  394 (417)
                      ..-=-.+.+-|.+.|.+..|..-+++|.+. .+-+.   ...-.+..+|-..|..++|...- ..+..+.|+.
T Consensus       167 A~~Em~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~-~vl~~N~p~s  237 (254)
T COG4105         167 AGHEMAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTA-KVLGANYPDS  237 (254)
T ss_pred             HHHHHHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHH-HHHHhcCCCC
Confidence            001123456788888998898888888887 22222   34556677888899888888774 4444455543

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.58  E-value=5.6  Score=39.85  Aligned_cols=261  Identities=13%  Similarity=0.115  Sum_probs=136.4

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHcCCCCCCCHHHHHHH
Q 014860          103 NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKM---YQEMDDVVNQMLATPSFCGTEALYNTI  179 (417)
Q Consensus       103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~~l  179 (417)
                      +...++.-+...+.+..|+++-.|+. .+-.. ....|......+.+..+   -+-+..+-+++.. ..  -....|..+
T Consensus       439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~-~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~-~~--~~~iSy~~i  513 (829)
T KOG2280|consen  439 SEEVVIDRLVDRHLYSVAIQVAKLLN-LPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA-KL--TPGISYAAI  513 (829)
T ss_pred             chhhhhHHHHhcchhHHHHHHHHHhC-Ccccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcc-cC--CCceeHHHH
Confidence            44567777888889999999999984 22111 25666666666655532   2222223333222 22  334667778


Q ss_pred             HHHHHHhCCHHHHHHHHHHhHhCCCCCC--CCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC--------
Q 014860          180 IYFFAEARKLSRAVYVFKYMKNSRNLEC--RPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG--------  249 (417)
Q Consensus       180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~--~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g--------  249 (417)
                      .+....+|+.+-|..+++.=...+. .+  -.+..-+...+.-+...|+        .+....++.+|...-        
T Consensus       514 A~~Ay~~GR~~LA~kLle~E~~~~~-qV~lLL~m~~~~~AL~kaies~d--------~~Li~~Vllhlk~~~~~s~l~~~  584 (829)
T KOG2280|consen  514 ARRAYQEGRFELARKLLELEPRSGE-QVPLLLKMKDSSLALKKAIESGD--------TDLIIQVLLHLKNKLNRSSLFMT  584 (829)
T ss_pred             HHHHHhcCcHHHHHHHHhcCCCccc-hhHHHhccchHHHHHHHHHhcCC--------chhHHHHHHHHHHHHHHHHHHHH
Confidence            8877889999999888775443310 00  0122234445555555665        333333333222210        


Q ss_pred             ---CCCCHHHH----------------------------------------------HHHHHHHHhcCCH----------
Q 014860          250 ---IEPDIFSL----------------------------------------------NSMIKGYILSNHV----------  270 (417)
Q Consensus       250 ---~~p~~~~~----------------------------------------------~~li~~~~~~g~~----------  270 (417)
                         .+.....|                                              ...-+++.+....          
T Consensus       585 l~~~p~a~~lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~  664 (829)
T KOG2280|consen  585 LRNQPLALSLYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQ  664 (829)
T ss_pred             HHhchhhhHHHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHH
Confidence               00000111                                              1111222222111          


Q ss_pred             HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860          271 NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWE  350 (417)
Q Consensus       271 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  350 (417)
                      .+-.++.+.+....|..-..-+.+--+.-+...|+..+|.++-.+.+    .||-..|-.=+.+++..++|++-+++-+.
T Consensus       665 ~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAks  740 (829)
T KOG2280|consen  665 MKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKS  740 (829)
T ss_pred             HHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhc
Confidence            11112222222223333333344444555666677777776665544    35777777777888888888776665444


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860          351 MIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQ  387 (417)
Q Consensus       351 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  387 (417)
                      ++      .+.-|.-++.+|.+.|+.+||.+++.+..
T Consensus       741 kk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~  771 (829)
T KOG2280|consen  741 KK------SPIGYLPFVEACLKQGNKDEAKKYIPRVG  771 (829)
T ss_pred             cC------CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence            33      23346667778888888888888776543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.33  E-value=0.9  Score=39.69  Aligned_cols=98  Identities=20%  Similarity=0.244  Sum_probs=42.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-HHHHHHHH
Q 014860          256 SLNSMIKGYILSNHVNDALRIFHQMGVVY-NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK-GFVPS-SKSYNSLV  332 (417)
Q Consensus       256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-~~~~~~li  332 (417)
                      .|+.-+. +.+.|++..|...|....+.+ +-.-....+-.|.+++...|++++|..+|..+.+. +-.|- ..++--|.
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            3444443 234444555555555554421 00011222334455555555555555555555443 11111 23344444


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHc
Q 014860          333 SALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      .+..+.|+.++|...|++..+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            4444555555555555554443

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=94.24  E-value=2.5  Score=41.55  Aligned_cols=219  Identities=12%  Similarity=0.084  Sum_probs=124.9

Q ss_pred             CCHHHHHHHHhccCC--hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHH
Q 014860          102 FNNEELCNVMTLQED--PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTI  179 (417)
Q Consensus       102 ~~~~~ll~~l~~~~~--~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l  179 (417)
                      ..++..-.+|.+-++  +-+-+.-++.+ ++.|-.|+....   ...|+-.|.+.+|-++|.+   .|..       |-.
T Consensus       599 L~f~~ARkAY~rVRdl~~L~li~EL~~~-k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~---~G~e-------nRA  664 (1081)
T KOG1538|consen  599 LDFETARKAYIRVRDLRYLELISELEER-KKRGETPNDLLL---ADVFAYQGKFHEAAKLFKR---SGHE-------NRA  664 (1081)
T ss_pred             hhhHHHHHHHHHHhccHHHHHHHHHHHH-HhcCCCchHHHH---HHHHHhhhhHHHHHHHHHH---cCch-------hhH
Confidence            345555566644443  44445555566 355556766543   3456678889998888864   3322       344


Q ss_pred             HHHHHHhCCHHHHHHHHHHhH-------hCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHH-----H-HH
Q 014860          180 IYFFAEARKLSRAVYVFKYMK-------NSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFK-----Q-MV  246 (417)
Q Consensus       180 i~~~~~~g~~~~a~~~~~~m~-------~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~-----~-m~  246 (417)
                      +.+|...+.+|.|.+++..-.       -++......++.-=.+....+...|+        .++|..+.-     + +.
T Consensus       665 lEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe--------~~KAi~i~~d~gW~d~li  736 (1081)
T KOG1538|consen  665 LEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGE--------HVKAIEICGDHGWVDMLI  736 (1081)
T ss_pred             HHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccc--------hhhhhhhhhcccHHHHHH
Confidence            556666666666665543211       00000000011111133445556676        444444321     1 11


Q ss_pred             HCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014860          247 NDGI---EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP  323 (417)
Q Consensus       247 ~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  323 (417)
                      +-+-   ..+..+...+-..+.+...+..|-++|..|..          ...++......++|.+|..+-+..-+  ..|
T Consensus       737 dI~rkld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe--~~~  804 (1081)
T KOG1538|consen  737 DIARKLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPE--FKD  804 (1081)
T ss_pred             HHHhhcchhhhhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCcc--ccc
Confidence            1111   23445555555566677788899999998865          23567778888999999988776544  234


Q ss_pred             CHH-----------HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          324 SSK-----------SYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       324 ~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      |+.           -|.-.-.+|-++|+-.+|.++++++...
T Consensus       805 dVy~pyaqwLAE~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn  846 (1081)
T KOG1538|consen  805 DVYMPYAQWLAENDRFEEAQKAFHKAGRQREAVQVLEQLTNN  846 (1081)
T ss_pred             cccchHHHHhhhhhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence            432           2344556888999999999999988765

>PRK15331 chaperone protein SicA; Provisional

Probab=94.21  E-value=0.61  Score=37.59  Aligned_cols=86  Identities=10%  Similarity=-0.054  Sum_probs=48.7

Q ss_pred             HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860          265 ILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEET  344 (417)
Q Consensus       265 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  344 (417)
                      -..|++++|..+|.-+.. .+. -+..-|..|-.++-..+++++|...|...-..+.. |...+-..-.+|...|+.+.|
T Consensus        48 y~~Gk~~eA~~~F~~L~~-~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCI-YDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HHCCCHHHHHHHHHHHHH-hCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHH
Confidence            356667777777666654 222 23334455555555566666666666655544322 333344455666666666666


Q ss_pred             HHHHHHHHH
Q 014860          345 VKNLWEMIE  353 (417)
Q Consensus       345 ~~~~~~m~~  353 (417)
                      ...|....+
T Consensus       125 ~~~f~~a~~  133 (165)
T PRK15331        125 RQCFELVNE  133 (165)
T ss_pred             HHHHHHHHh
Confidence            666666655

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.01  E-value=0.72  Score=40.88  Aligned_cols=84  Identities=11%  Similarity=0.138  Sum_probs=72.3

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC--CCCCCCCCHHHH
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS--RNLECRPSIRSY  214 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~g~~p~~~~~  214 (417)
                      ..++..++..+...|+++.+...++.+....+  -+...|..+|.+|.+.|+...|+..|+.+.+.  .++|+.|...+.
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp--~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~  230 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDP--YDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELR  230 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCc--cchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHH
Confidence            45667788888999999999999999999876  68899999999999999999999999999872  356899998888


Q ss_pred             HHHHHHHH
Q 014860          215 NILFTAFL  222 (417)
Q Consensus       215 ~~li~~~~  222 (417)
                      ........
T Consensus       231 ~~y~~~~~  238 (280)
T COG3629         231 ALYEEILR  238 (280)
T ss_pred             HHHHHHhc
Confidence            87777733

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.92  E-value=2.7  Score=33.74  Aligned_cols=83  Identities=7%  Similarity=0.026  Sum_probs=55.8

Q ss_pred             HHHHHHHHHHH---HccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHH
Q 014860          137 ASTYHIMTRKL---GAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRS  213 (417)
Q Consensus       137 ~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~  213 (417)
                      ....+.||..+   .+.++.++++.+++.+.-..+..+...++..++  +.+.|++++|+++|+++.+.     .|....
T Consensus         7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~-----~~~~p~   79 (160)
T PF09613_consen    7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEER-----APGFPY   79 (160)
T ss_pred             HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhcc-----CCCChH
Confidence            34444555443   467799999999999987765435555555554  47889999999999998876     344444


Q ss_pred             HHHHHHHHHhcCC
Q 014860          214 YNILFTAFLSRGK  226 (417)
Q Consensus       214 ~~~li~~~~~~g~  226 (417)
                      -..|+..|.....
T Consensus        80 ~kALlA~CL~~~~   92 (160)
T PF09613_consen   80 AKALLALCLYALG   92 (160)
T ss_pred             HHHHHHHHHHHcC
Confidence            4556665555444

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=93.80  E-value=2.8  Score=33.67  Aligned_cols=110  Identities=16%  Similarity=0.189  Sum_probs=60.8

Q ss_pred             HHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-CCHH
Q 014860          264 YILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN-GEVE  342 (417)
Q Consensus       264 ~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~-g~~~  342 (417)
                      -.+.++.++++.+++.+....--.+...++...+  +...|++.+|..+|+++.+.+  |....-.+|+..|... |+.+
T Consensus        20 al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l--~i~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~D~~   95 (160)
T PF09613_consen   20 ALRLGDPDDAEALLDALRVLRPEFPELDLFDGWL--HIVRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALGDPS   95 (160)
T ss_pred             HHccCChHHHHHHHHHHHHhCCCchHHHHHHHHH--HHHhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcCChH
Confidence            3456788888888888865322223344444444  677889999999999987653  3333344444444332 3222


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHH
Q 014860          343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMK  381 (417)
Q Consensus       343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  381 (417)
                       =..+-+++.+.+-.|+.   ..++..+....+...|..
T Consensus        96 -Wr~~A~evle~~~d~~a---~~Lv~~Ll~~~~~~~a~~  130 (160)
T PF09613_consen   96 -WRRYADEVLESGADPDA---RALVRALLARADLEPAHE  130 (160)
T ss_pred             -HHHHHHHHHhcCCChHH---HHHHHHHHHhccccchhh
Confidence             12223445555433332   335555555555554444

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.79  E-value=4  Score=35.19  Aligned_cols=209  Identities=14%  Similarity=0.115  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI  216 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~  216 (417)
                      ...|.....+|-...++++|...+....+-..  .+.       ..+..+..++.|.-+.++|.+.     .--+..|+-
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yE--nnr-------slfhAAKayEqaamLake~~kl-----sEvvdl~eK   96 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYE--NNR-------SLFHAAKAYEQAAMLAKELSKL-----SEVVDLYEK   96 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHH--hcc-------cHHHHHHHHHHHHHHHHHHHHh-----HHHHHHHHH
Confidence            44555666667777777777776555543221  222       2223344566677777777653     112344666


Q ss_pred             HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----CCCCCCHHH
Q 014860          217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVV----YNYLPNSFS  292 (417)
Q Consensus       217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~~~~~~~  292 (417)
                      -...|...|.        .+.|-..++..-+                .....+.++|++++++-...    .....-...
T Consensus        97 As~lY~E~Gs--------pdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el  152 (308)
T KOG1585|consen   97 ASELYVECGS--------PDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFEL  152 (308)
T ss_pred             HHHHHHHhCC--------cchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            7777777777        4444444333221                01122344444444433210    011122233


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHH
Q 014860          293 YDYLIHGLCAQGRTKNARELCDEMKRK----GFVPSS-KSYNSLVSALALNGEVEETVKNLWEMIEK---QRPVDFITYR  364 (417)
Q Consensus       293 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~  364 (417)
                      +..+-..+.+..++++|-..+.+-...    .--++. ..|.+.|-.|....++..|.+.++.-..-   .-.-+..+..
T Consensus       153 ~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~le  232 (308)
T KOG1585|consen  153 YGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLE  232 (308)
T ss_pred             HHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHH
Confidence            445555677878887776655543211    111222 34666666777778888999988874443   2233566788


Q ss_pred             HHHHHHHHcCCHhHHHHHHH
Q 014860          365 TVLDEICRRGRAGEAMKLLK  384 (417)
Q Consensus       365 ~li~~~~~~g~~~~A~~~~~  384 (417)
                      .|+.+|- .|+.+++..++.
T Consensus       233 nLL~ayd-~gD~E~~~kvl~  251 (308)
T KOG1585|consen  233 NLLTAYD-EGDIEEIKKVLS  251 (308)
T ss_pred             HHHHHhc-cCCHHHHHHHHc
Confidence            8888874 567766655543

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.71  E-value=2.6  Score=42.63  Aligned_cols=180  Identities=11%  Similarity=0.123  Sum_probs=111.1

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHH----HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII----YFFAEARKLSRAVYVFKYMKNSRNLECRPSI  211 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li----~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~  211 (417)
                      .......-|..+.+...++-|..+...-   +   .+..+...+.    ..+.+.|++++|...|-+-...    +.|. 
T Consensus       333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~---~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~----le~s-  401 (933)
T KOG2114|consen  333 IEKDLETKLDILFKKNLYKVAINLAKSQ---H---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF----LEPS-  401 (933)
T ss_pred             eeccHHHHHHHHHHhhhHHHHHHHHHhc---C---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc----CChH-
Confidence            3445556677777777888777765442   1   2333333333    4445678888888888777653    3332 


Q ss_pred             HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860          212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF  291 (417)
Q Consensus       212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  291 (417)
                          .+|.-|.....        +.....+++.+.+.|+ .+...-..|+.+|.+.++.+.-.++.+...+ .-..-|  
T Consensus       402 ----~Vi~kfLdaq~--------IknLt~YLe~L~~~gl-a~~dhttlLLncYiKlkd~~kL~efI~~~~~-g~~~fd--  465 (933)
T KOG2114|consen  402 ----EVIKKFLDAQR--------IKNLTSYLEALHKKGL-ANSDHTTLLLNCYIKLKDVEKLTEFISKCDK-GEWFFD--  465 (933)
T ss_pred             ----HHHHHhcCHHH--------HHHHHHHHHHHHHccc-ccchhHHHHHHHHHHhcchHHHHHHHhcCCC-cceeee--
Confidence                35556666665        7777778888888885 4666667888889998888888777776652 111112  


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEM  351 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  351 (417)
                       ....+..+.+.+-.++|..+-..-..     +......++.   ..|++++|++++..|
T Consensus       466 -~e~al~Ilr~snyl~~a~~LA~k~~~-----he~vl~ille---~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  466 -VETALEILRKSNYLDEAELLATKFKK-----HEWVLDILLE---DLHNYEEALRYISSL  516 (933)
T ss_pred             -HHHHHHHHHHhChHHHHHHHHHHhcc-----CHHHHHHHHH---HhcCHHHHHHHHhcC
Confidence             33456666666666766665544332     3333343333   556777777776653

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=93.66  E-value=2.6  Score=32.58  Aligned_cols=121  Identities=14%  Similarity=0.163  Sum_probs=67.0

Q ss_pred             hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860          266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETV  345 (417)
Q Consensus       266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  345 (417)
                      -.|.+++..++..+....    .+..-+|.+|--....-+-+-..+.++.+-+   .-|..          .+|++....
T Consensus        14 ldG~V~qGveii~k~v~S----sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis----------~C~NlKrVi   76 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNS----SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDIS----------KCGNLKRVI   76 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHH----S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GG----------G-S-THHHH
T ss_pred             HhchHHHHHHHHHHHcCc----CCccccceeeeecchhhchhHHHHHHHHHhh---hcCch----------hhcchHHHH
Confidence            457777778888777663    5666677777666665555555555555443   22222          223333333


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Q 014860          346 KNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDF  408 (417)
Q Consensus       346 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~  408 (417)
                      ..+-.+-     .+.......+..+...|.-+...+++.++.+.+-+++.....+-.+|.+-+
T Consensus        77 ~C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg  134 (161)
T PF09205_consen   77 ECYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLG  134 (161)
T ss_dssp             HHHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT
T ss_pred             HHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhc
Confidence            3332211     134456677788899999999999999998776678888888888887663

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.63  E-value=3.5  Score=34.12  Aligned_cols=99  Identities=9%  Similarity=0.113  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC--HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH---
Q 014860          173 EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS--IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN---  247 (417)
Q Consensus       173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~---  247 (417)
                      ...+..+...|++.|+.+.|.+.|.++.+.   ...+.  ...+-.+|+.....++        +..+.....+...   
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d--------~~~v~~~i~ka~~~~~  104 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGD--------WSHVEKYIEKAESLIE  104 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHh
Confidence            356778889999999999999999998875   33332  4457778888888888        7777777666553   


Q ss_pred             CCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhh
Q 014860          248 DGIEPDIFSLNSMIKG--YILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       248 ~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~  282 (417)
                      .|-.++...--.+..+  +...+++..|-+.|-+...
T Consensus       105 ~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  105 KGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             ccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCc
Confidence            2212221111111111  2345677777777766644

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.63  E-value=5.4  Score=36.11  Aligned_cols=158  Identities=7%  Similarity=-0.102  Sum_probs=97.0

Q ss_pred             HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860          147 LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK  226 (417)
Q Consensus       147 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~  226 (417)
                      +...|++.+|-..++++.+.-+  .|...++..=++|.-.|+.+.-...++++...-+.+++-....-....-++...|-
T Consensus       113 ~~~~g~~h~a~~~wdklL~d~P--tDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~  190 (491)
T KOG2610|consen  113 LWGRGKHHEAAIEWDKLLDDYP--TDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGI  190 (491)
T ss_pred             hhccccccHHHHHHHHHHHhCc--hhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhcc
Confidence            4456777888788888877654  56777777777888888888888888877654222222222222233334456676


Q ss_pred             ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC--CCHHHHHHHHHHHHhcC
Q 014860          227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYL--PNSFSYDYLIHGLCAQG  304 (417)
Q Consensus       227 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~g  304 (417)
                              +++|++.-++..+.+ +-|.-.-.++...+-..|++.++.++..+-.......  .-..-|=...-.+...+
T Consensus       191 --------y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~a  261 (491)
T KOG2610|consen  191 --------YDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGA  261 (491)
T ss_pred             --------chhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhccc
Confidence                    888887777776654 4566666677777777888888888776655422100  01111112222344457


Q ss_pred             CHHHHHHHHHH
Q 014860          305 RTKNARELCDE  315 (417)
Q Consensus       305 ~~~~A~~l~~~  315 (417)
                      .++.|+++|++
T Consensus       262 eye~aleIyD~  272 (491)
T KOG2610|consen  262 EYEKALEIYDR  272 (491)
T ss_pred             chhHHHHHHHH
Confidence            78888888864

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.57  E-value=5  Score=35.63  Aligned_cols=143  Identities=12%  Similarity=0.073  Sum_probs=75.9

Q ss_pred             HHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 014860          146 KLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG  225 (417)
Q Consensus       146 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g  225 (417)
                      .....|++.+|..+|........  .+...--.++.+|...|+.+.|..++..+....   -.........-|..+.+..
T Consensus       143 ~~~~~e~~~~a~~~~~~al~~~~--~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~---~~~~~~~l~a~i~ll~qaa  217 (304)
T COG3118         143 ELIEAEDFGEAAPLLKQALQAAP--ENSEAKLLLAECLLAAGDVEAAQAILAALPLQA---QDKAAHGLQAQIELLEQAA  217 (304)
T ss_pred             hhhhccchhhHHHHHHHHHHhCc--ccchHHHHHHHHHHHcCChHHHHHHHHhCcccc---hhhHHHHHHHHHHHHHHHh
Confidence            44567777777777777776654  234555667777778888888888887776541   0111111112233333333


Q ss_pred             CccchhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC
Q 014860          226 KNTYINHVYMETIRCLFKQMVNDGIEP-DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG  304 (417)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g  304 (417)
                      .        ..+...+-.+.-.   .| |...--.+-..+...|+.+.|.+.+-.+.++..---|...-..|+..+.-.|
T Consensus       218 ~--------~~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         218 A--------TPEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             c--------CCCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcC
Confidence            3        2223333333332   24 4445555666667777777766655444332222233444455555555444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=93.57  E-value=7.2  Score=37.36  Aligned_cols=78  Identities=8%  Similarity=0.107  Sum_probs=52.8

Q ss_pred             HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC-CCCHHH
Q 014860          215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNY-LPNSFS  292 (417)
Q Consensus       215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-~~~~~~  292 (417)
                      ..+-.++-+.|+        .++|.+.|++|.+.... -...+...|++++...+.+.++..++.+..+ ... +--..+
T Consensus       263 rRLAmCarklGr--------~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD-i~lpkSAti~  333 (539)
T PF04184_consen  263 RRLAMCARKLGR--------LREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD-ISLPKSATIC  333 (539)
T ss_pred             HHHHHHHHHhCC--------hHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc-ccCCchHHHH
Confidence            345566667888        89999999998765322 2344667789999999999999999988754 222 123455


Q ss_pred             HHHHHHHHH
Q 014860          293 YDYLIHGLC  301 (417)
Q Consensus       293 ~~~li~~~~  301 (417)
                      |+..+-.+.
T Consensus       334 YTaALLkaR  342 (539)
T PF04184_consen  334 YTAALLKAR  342 (539)
T ss_pred             HHHHHHHHH
Confidence            666554333

The molecular function of this protein is uncertain.

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=93.56  E-value=5.3  Score=35.83  Aligned_cols=225  Identities=10%  Similarity=0.099  Sum_probs=128.4

Q ss_pred             hccCChhHHHHHHHHhhcCC-CCCCCHH------HHHHHHHHHHccC-ChhHHHHHHHHHHcC----C---CCCCC----
Q 014860          112 TLQEDPLVCLELFNWASKQP-RFRHDAS------TYHIMTRKLGAAK-MYQEMDDVVNQMLAT----P---SFCGT----  172 (417)
Q Consensus       112 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~------~~~~li~~~~~~~-~~~~a~~~~~~m~~~----~---~~~~~----  172 (417)
                      .++|+.+.|..++.++.... ...|+..      .|+.-...+ ..+ ++++|...+++..+.    +   ...++    
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            46789999999999885433 2223221      122222233 455 888887777666553    1   11133    


Q ss_pred             -HHHHHHHHHHHHHhCCHH---HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          173 -EALYNTIIYFFAEARKLS---RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       173 -~~~~~~li~~~~~~g~~~---~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                       ..+...++.+|...+..+   +|.++++.+...    ..-....+-.-+..+.+.++        .+.+.+++.+|...
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e----~~~~~~~~~L~l~il~~~~~--------~~~~~~~L~~mi~~  150 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESE----YGNKPEVFLLKLEILLKSFD--------EEEYEEILMRMIRS  150 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh----CCCCcHHHHHHHHHHhccCC--------hhHHHHHHHHHHHh
Confidence             346777888888887754   567777777664    12224556667777777888        89999999999976


Q ss_pred             CCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHhhhhCCCCCCHHHH--HHHHHH---HHhcC------CHHHHHHHHH
Q 014860          249 GIEPDIFSLNSMIKGY---ILSNHVNDALRIFHQMGVVYNYLPNSFSY--DYLIHG---LCAQG------RTKNARELCD  314 (417)
Q Consensus       249 g~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~~~~~~~~--~~li~~---~~~~g------~~~~A~~l~~  314 (417)
                      - ......+..++..+   .... ...|...++.+.. ..+.|....|  ..++..   ..+.+      +.+...++++
T Consensus       151 ~-~~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~-~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~  227 (278)
T PF08631_consen  151 V-DHSESNFDSILHHIKQLAEKS-PELAAFCLDYLLL-NRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLS  227 (278)
T ss_pred             c-ccccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHH-HHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHH
Confidence            3 22445566665555   3333 3455566655544 3334443211  111111   11211      1455555666


Q ss_pred             HHHHC-CCCCCHHHHHHHH-------HHHHhcCCHHHHHHHHHHHH
Q 014860          315 EMKRK-GFVPSSKSYNSLV-------SALALNGEVEETVKNLWEMI  352 (417)
Q Consensus       315 ~m~~~-g~~p~~~~~~~li-------~~~~~~g~~~~A~~~~~~m~  352 (417)
                      ...+. +.+.+..+-.++.       ..+.+.+++++|.++|+-..
T Consensus       228 ~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  228 IVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            44432 3444555543333       33556789999999987543

It is also involved in sporulation [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=93.51  E-value=6.2  Score=36.49  Aligned_cols=252  Identities=13%  Similarity=0.048  Sum_probs=159.4

Q ss_pred             hccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH----HccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860          112 TLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKL----GAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR  187 (417)
Q Consensus       112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g  187 (417)
                      .-.|+++.|.+-|+.|..      |+++-..=++++    -+.|+.+.|.+.-+..-..-.  .-...+.+.+...+..|
T Consensus       131 l~eG~~~~Ar~kfeAMl~------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap--~l~WA~~AtLe~r~~~g  202 (531)
T COG3898         131 LLEGDYEDARKKFEAMLD------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAP--QLPWAARATLEARCAAG  202 (531)
T ss_pred             HhcCchHHHHHHHHHHhc------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhcc--CCchHHHHHHHHHHhcC
Confidence            467999999999999963      455544444443    378899999888887766543  34578889999999999


Q ss_pred             CHHHHHHHHHHhHhCCCCCCCCCHHH--HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHH
Q 014860          188 KLSRAVYVFKYMKNSRNLECRPSIRS--YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFS-LNSMIKGY  264 (417)
Q Consensus       188 ~~~~a~~~~~~m~~~~~~g~~p~~~~--~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-~~~li~~~  264 (417)
                      +++.|+++.+.-+...  -+.++..-  -..|+.+-....-+..     ...|...-.+..  .+.||..- --.--.++
T Consensus       203 dWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLtAkA~s~ldad-----p~~Ar~~A~~a~--KL~pdlvPaav~AAral  273 (531)
T COG3898         203 DWDGALKLVDAQRAAK--VIEKDVAERSRAVLLTAKAMSLLDAD-----PASARDDALEAN--KLAPDLVPAAVVAARAL  273 (531)
T ss_pred             ChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHHHHHHHhcCC-----hHHHHHHHHHHh--hcCCccchHHHHHHHHH
Confidence            9999999999887763  34444322  2233333222111000     344444333333  34566432 23345678


Q ss_pred             HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 014860          265 ILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK-GFVP-SSKSYNSLVSALALNGEVE  342 (417)
Q Consensus       265 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p-~~~~~~~li~~~~~~g~~~  342 (417)
                      .+.|+..++-.+++.+=+ .  .|....+  .+..+.+.|+.  +.+=+++.... .++| |..+--.+..+-...|++.
T Consensus       274 f~d~~~rKg~~ilE~aWK-~--ePHP~ia--~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~  346 (531)
T COG3898         274 FRDGNLRKGSKILETAWK-A--EPHPDIA--LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFS  346 (531)
T ss_pred             HhccchhhhhhHHHHHHh-c--CCChHHH--HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchH
Confidence            899999999999998855 2  3433332  33334555653  22222222211 1333 4566777788888899998


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHhHHHHHHHHHHHC
Q 014860          343 ETVKNLWEMIEKQRPVDFITYRTVLDEIC-RRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~  389 (417)
                      .|..--+....  ..|....|..|.+.-. ..|+-.++.+.+.+-.+.
T Consensus       347 ~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         347 AARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            88776555544  4678888877777544 448988988888877664

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=93.41  E-value=5.4  Score=35.44  Aligned_cols=62  Identities=6%  Similarity=-0.005  Sum_probs=29.4

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014860          285 NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK-GFVPSSKSYNSLVSALALNGEVEETVK  346 (417)
Q Consensus       285 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~  346 (417)
                      +-.++..+...+|..++..+++.+-.++++..... +..-|...|..+|+.-.+.|+..-..+
T Consensus       197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~k  259 (292)
T PF13929_consen  197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRK  259 (292)
T ss_pred             ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHH
Confidence            33444444555555555555555555554444333 333344445555555555555444333

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.33  E-value=1.3  Score=39.32  Aligned_cols=76  Identities=14%  Similarity=0.093  Sum_probs=34.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHH
Q 014860          293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE-----KQRPVDFITYRTVL  367 (417)
Q Consensus       293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~~li  367 (417)
                      +..++..+...|+.+.+...++++.... +-|...|..++.+|.+.|+...|...|+.+..     .|+.|...+.....
T Consensus       156 l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y~  234 (280)
T COG3629         156 LTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALYE  234 (280)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHHH
Confidence            3344444444444444444444444432 12444455555555555555555444444433     15555554444443


Q ss_pred             HH
Q 014860          368 DE  369 (417)
Q Consensus       368 ~~  369 (417)
                      ..
T Consensus       235 ~~  236 (280)
T COG3629         235 EI  236 (280)
T ss_pred             HH
Confidence            33

>PRK15331 chaperone protein SicA; Provisional

Probab=93.15  E-value=1.1  Score=36.15  Aligned_cols=88  Identities=8%  Similarity=-0.030  Sum_probs=68.8

Q ss_pred             HHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 014860          146 KLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG  225 (417)
Q Consensus       146 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g  225 (417)
                      -+-..|++++|..+|.-+...+.  -+..-|..|..++-..+++++|+..|...-...    .-|...+-..-.++...|
T Consensus        46 ~~y~~Gk~~eA~~~F~~L~~~d~--~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~----~~dp~p~f~agqC~l~l~  119 (165)
T PRK15331         46 EFYNQGRLDEAETFFRFLCIYDF--YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL----KNDYRPVFFTGQCQLLMR  119 (165)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc----cCCCCccchHHHHHHHhC
Confidence            34578999999999998888766  566677888888888899999999988776542    234445667778888889


Q ss_pred             CccchhhhhHHHHHHHHHHHHH
Q 014860          226 KNTYINHVYMETIRCLFKQMVN  247 (417)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~~m~~  247 (417)
                      +        .+.|...|....+
T Consensus       120 ~--------~~~A~~~f~~a~~  133 (165)
T PRK15331        120 K--------AAKARQCFELVNE  133 (165)
T ss_pred             C--------HHHHHHHHHHHHh
Confidence            8        8999988888776

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.08  E-value=4.1  Score=33.17  Aligned_cols=139  Identities=11%  Similarity=0.057  Sum_probs=83.3

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHH-HH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIR-SY  214 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~-~~  214 (417)
                      +...|...++ +++.+..++|..-|..+.+.|...--...---+.....+.|+...|+..|+++-..   .-.|-.. -.
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~  133 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDL  133 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHH
Confidence            4445554443 34667778888888888877653111222223334566778888888888888765   2222221 11


Q ss_pred             HHHHH--HHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 014860          215 NILFT--AFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNY  286 (417)
Q Consensus       215 ~~li~--~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  286 (417)
                      .-|=.  .+...|.        ++.+..-.+.+-..+.+.-...-.+|--+-.+.|++.+|...|..+..+.+.
T Consensus       134 ARlraa~lLvD~gs--------y~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~a  199 (221)
T COG4649         134 ARLRAAYLLVDNGS--------YDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQA  199 (221)
T ss_pred             HHHHHHHHHhcccc--------HHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccC
Confidence            11222  2455666        7777777666665554444455566767777888888888888888764333

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.97  E-value=6.9  Score=35.45  Aligned_cols=153  Identities=12%  Similarity=0.086  Sum_probs=106.8

Q ss_pred             HhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC---CCCCCHHHHHHHH
Q 014860          185 EARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND---GIEPDIFSLNSMI  261 (417)
Q Consensus       185 ~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li  261 (417)
                      ..|+..+|...++++.+    ..+.|..+++..-.+|.-.|+        .+.-...+++....   +++-..++-..+-
T Consensus       115 ~~g~~h~a~~~wdklL~----d~PtDlla~kfsh~a~fy~G~--------~~~~k~ai~kIip~wn~dlp~~sYv~Gmya  182 (491)
T KOG2610|consen  115 GRGKHHEAAIEWDKLLD----DYPTDLLAVKFSHDAHFYNGN--------QIGKKNAIEKIIPKWNADLPCYSYVHGMYA  182 (491)
T ss_pred             ccccccHHHHHHHHHHH----hCchhhhhhhhhhhHHHhccc--------hhhhhhHHHHhccccCCCCcHHHHHHHHHH
Confidence            45777778788888887    467789999999999999999        77777788877643   2222334445555


Q ss_pred             HHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhc
Q 014860          262 KGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK---GFVPSSKSYNSLVSALALN  338 (417)
Q Consensus       262 ~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~~~~~li~~~~~~  338 (417)
                      -++..+|-+++|++.-++..+. + +.|.-.-.+....+-..|+..++.++..+-...   +.-.-..-|-...-.+...
T Consensus       183 FgL~E~g~y~dAEk~A~ralqi-N-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~  260 (491)
T KOG2610|consen  183 FGLEECGIYDDAEKQADRALQI-N-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG  260 (491)
T ss_pred             hhHHHhccchhHHHHHHhhccC-C-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence            6667899999999999887651 1 245556667777888899999999887664432   1111112233334455667


Q ss_pred             CCHHHHHHHHHHH
Q 014860          339 GEVEETVKNLWEM  351 (417)
Q Consensus       339 g~~~~A~~~~~~m  351 (417)
                      +.++.|+++|+.=
T Consensus       261 aeye~aleIyD~e  273 (491)
T KOG2610|consen  261 AEYEKALEIYDRE  273 (491)
T ss_pred             cchhHHHHHHHHH
Confidence            8999999999753

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=92.95  E-value=5.6  Score=37.52  Aligned_cols=134  Identities=12%  Similarity=0.107  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHHHCCCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 014860          235 METIRCLFKQMVNDGIEPD------IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKN  308 (417)
Q Consensus       235 ~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~  308 (417)
                      ..++.++|.+..+.. .-+      ....+-+|++|... +.+.....+....+..|-.+-...|.++.  +-+.+.+.+
T Consensus        22 ~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~~~~s~~l~LF~~L~--~Y~~k~~~k   97 (549)
T PF07079_consen   22 FQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQFGKSAYLPLFKALV--AYKQKEYRK   97 (549)
T ss_pred             hhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHhcCCchHHHHHHHHH--HHHhhhHHH
Confidence            889999998887543 222      23345677777654 57777777777776544333333333322  346788899


Q ss_pred             HHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHH
Q 014860          309 ARELCDEMKRK--GFVP------------SSKSYNSLVSALALNGEVEETVKNLWEMIEKQ----RPVDFITYRTVLDEI  370 (417)
Q Consensus       309 A~~l~~~m~~~--g~~p------------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~~~~~li~~~  370 (417)
                      |.+.+....+.  +..|            |...=+..+.++.+.|++.++..++++|...=    ...+..+|+.++-.+
T Consensus        98 al~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlml  177 (549)
T PF07079_consen   98 ALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLML  177 (549)
T ss_pred             HHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHH
Confidence            98888776654  3222            22223777888899999999999999988763    347888898866655


Q ss_pred             HH
Q 014860          371 CR  372 (417)
Q Consensus       371 ~~  372 (417)
                      ++
T Consensus       178 sr  179 (549)
T PF07079_consen  178 SR  179 (549)
T ss_pred             hH
Confidence            44

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=92.72  E-value=1.7  Score=34.16  Aligned_cols=53  Identities=15%  Similarity=0.122  Sum_probs=23.7

Q ss_pred             hcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          302 AQGRTKNARELCDEMKRKG--FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       302 ~~g~~~~A~~l~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      +.|++++|.+.|+.+...=  -.-....--.|+.+|.+.|++++|...+++.++.
T Consensus        22 ~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL   76 (142)
T PF13512_consen   22 QKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL   76 (142)
T ss_pred             HhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            3445555555555554430  0112233344445555555555555555554443

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.65  E-value=7  Score=34.73  Aligned_cols=149  Identities=10%  Similarity=0.100  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-CCCCCCH
Q 014860          176 YNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-DGIEPDI  254 (417)
Q Consensus       176 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-~g~~p~~  254 (417)
                      |..|+.   +...+.+|+++|+......  .+--|..+...+++......+. .     ...--++.+.+.. .|-.++.
T Consensus       134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~--~Ii~d~evislLL~sMv~~~~~-~-----l~alYEvV~~l~~t~~~~l~~  202 (292)
T PF13929_consen  134 YWDLVK---RNKIVVEALKLYDGLNPDE--SIIFDEEVISLLLKSMVIDENT-K-----LNALYEVVDFLVSTFSKSLTR  202 (292)
T ss_pred             HHHHHH---hhHHHHHHHHHhhccCccc--ceeeChHHHHHHHHHHHhcccc-c-----hhhHHHHHHHHHhccccCCCh
Confidence            555554   4455678888888433210  3566788888888888873331 0     3333334444443 3457889


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHHHHH
Q 014860          255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDE-----MKRKGFVPSSKSYN  329 (417)
Q Consensus       255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~-----m~~~g~~p~~~~~~  329 (417)
                      .+...+|..++..++|..-.++++......+...|...|..+|......|+..-...+.++     +++.|+..+...-.
T Consensus       203 ~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~  282 (292)
T PF13929_consen  203 NVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRS  282 (292)
T ss_pred             hHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHH
Confidence            9999999999999999999999998876446677899999999999999999888777765     33445666665555


Q ss_pred             HHHHHH
Q 014860          330 SLVSAL  335 (417)
Q Consensus       330 ~li~~~  335 (417)
                      .+-+.+
T Consensus       283 ~L~~LF  288 (292)
T PF13929_consen  283 QLSELF  288 (292)
T ss_pred             HHHHHH
Confidence            544443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=92.58  E-value=16  Score=38.80  Aligned_cols=90  Identities=18%  Similarity=0.203  Sum_probs=42.9

Q ss_pred             CCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014860          251 EPDIFSLNSMIKGYI----LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK  326 (417)
Q Consensus       251 ~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  326 (417)
                      .|+...+..+..+|+    ..+.+++|.-.|+...+          ..-.+.+|..+|+|.+|+.+-..|....   |..
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk----------lekAl~a~~~~~dWr~~l~~a~ql~~~~---de~  998 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK----------LEKALKAYKECGDWREALSLAAQLSEGK---DEL  998 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc----------HHHHHHHHHHhccHHHHHHHHHhhcCCH---HHH
Confidence            345444444433332    34555555555554433          1123555556666666666555544221   111


Q ss_pred             --HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          327 --SYNSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       327 --~~~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                        +-..|+.-+...++.-+|-++..+...
T Consensus       999 ~~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen  999 VILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred             HHHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence              124455555556666555555555443

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.54  E-value=6.9  Score=39.79  Aligned_cols=178  Identities=13%  Similarity=0.167  Sum_probs=110.3

Q ss_pred             CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH----ccCChhHHHHHHHHHHcCCCCCCCHHHHH
Q 014860          102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLG----AAKMYQEMDDVVNQMLATPSFCGTEALYN  177 (417)
Q Consensus       102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  177 (417)
                      .+...-+..+.+..-++.|+.+-+.-      ..|..+...+...|+    +.|++++|.+.+-+-...  ..|     .
T Consensus       335 k~le~kL~iL~kK~ly~~Ai~LAk~~------~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~--le~-----s  401 (933)
T KOG2114|consen  335 KDLETKLDILFKKNLYKVAINLAKSQ------HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF--LEP-----S  401 (933)
T ss_pred             ccHHHHHHHHHHhhhHHHHHHHHHhc------CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc--CCh-----H
Confidence            34556677777777788888776432      245566666665554    899999998887766443  212     2


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 014860          178 TIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL  257 (417)
Q Consensus       178 ~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  257 (417)
                      .+|.-|..+.++.+-..+++.+.+.   |+. +...-+.|+.+|.+.++        .++..+..+.-. .|..  ..-.
T Consensus       402 ~Vi~kfLdaq~IknLt~YLe~L~~~---gla-~~dhttlLLncYiKlkd--------~~kL~efI~~~~-~g~~--~fd~  466 (933)
T KOG2114|consen  402 EVIKKFLDAQRIKNLTSYLEALHKK---GLA-NSDHTTLLLNCYIKLKD--------VEKLTEFISKCD-KGEW--FFDV  466 (933)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHc---ccc-cchhHHHHHHHHHHhcc--------hHHHHHHHhcCC-Ccce--eeeH
Confidence            4667777788888888888888887   443 44555789999999999        666655544332 2211  1123


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860          258 NSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEM  316 (417)
Q Consensus       258 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m  316 (417)
                      ...+..+.+.+-.++|..+-.....      .......+   +-..+++++|.+.+..|
T Consensus       467 e~al~Ilr~snyl~~a~~LA~k~~~------he~vl~il---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  467 ETALEILRKSNYLDEAELLATKFKK------HEWVLDIL---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHHHHhChHHHHHHHHHHhcc------CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence            4556666666666666666554432      22222232   33456677776666543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.39  E-value=11  Score=36.24  Aligned_cols=79  Identities=13%  Similarity=0.129  Sum_probs=56.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHH
Q 014860          258 NSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALA  336 (417)
Q Consensus       258 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~  336 (417)
                      .-+-.++.+.|+.++|.+.+.+|.+.....-+......||+++...+.+.++..++.+-.+...+.+ ...|+..+-.+.
T Consensus       263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR  342 (539)
T PF04184_consen  263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR  342 (539)
T ss_pred             HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            4456666788999999999999976443333455778899999999999999999999765432222 345666554433

The molecular function of this protein is uncertain.

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=92.35  E-value=4  Score=31.53  Aligned_cols=54  Identities=13%  Similarity=0.029  Sum_probs=28.8

Q ss_pred             HHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860          146 KLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKN  201 (417)
Q Consensus       146 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  201 (417)
                      +++..|+++.|.+.|.+.+..-+  .....||.-..++.-.|+.++|+.=+++..+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P--~raSayNNRAQa~RLq~~~e~ALdDLn~Ale  105 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAP--ERASAYNNRAQALRLQGDDEEALDDLNKALE  105 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhcc--cchHhhccHHHHHHHcCChHHHHHHHHHHHH
Confidence            34455555555555555554432  3445555555555555555555555555544

>PRK11906 transcriptional regulator; Provisional

Probab=92.14  E-value=11  Score=35.87  Aligned_cols=160  Identities=8%  Similarity=0.096  Sum_probs=99.8

Q ss_pred             HHHHHHHhc-----cCChhHHHHHHHHhhcCCCCCCC-HHHHHHHHHHHH---------ccCChhHHHHHHHHHHcCCCC
Q 014860          105 EELCNVMTL-----QEDPLVCLELFNWASKQPRFRHD-ASTYHIMTRKLG---------AAKMYQEMDDVVNQMLATPSF  169 (417)
Q Consensus       105 ~~ll~~l~~-----~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~li~~~~---------~~~~~~~a~~~~~~m~~~~~~  169 (417)
                      ...+++...     ....+.|+.+|..........|+ ...|..+...+.         ......+|.++.+...+.+. 
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-  335 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-  335 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-
Confidence            555555533     22466788889888633333443 444444333221         23345567777777777776 


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC-HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS-IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                       .|......+..+..-.++++.|...|++...-     .|| ..+|...--.+.-.|+        .++|.+.+++..+.
T Consensus       336 -~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L-----~Pn~A~~~~~~~~~~~~~G~--------~~~a~~~i~~alrL  401 (458)
T PRK11906        336 -VDGKILAIMGLITGLSGQAKVSHILFEQAKIH-----STDIASLYYYRALVHFHNEK--------IEEARICIDKSLQL  401 (458)
T ss_pred             -CCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc-----CCccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHhcc
Confidence             67777777777778888899999999998864     554 4556555556667888        88998888886554


Q ss_pred             C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014860          249 G-IEPDIFSLNSMIKGYILSNHVNDALRIFHQM  280 (417)
Q Consensus       249 g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  280 (417)
                      . .+.-.......|+.|+..+ ++.|.+++-+-
T Consensus       402 sP~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~  433 (458)
T PRK11906        402 EPRRRKAVVIKECVDMYVPNP-LKNNIKLYYKE  433 (458)
T ss_pred             CchhhHHHHHHHHHHHHcCCc-hhhhHHHHhhc
Confidence            2 1222334444555666554 56677766543

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=92.13  E-value=4.5  Score=31.27  Aligned_cols=90  Identities=17%  Similarity=0.071  Sum_probs=68.4

Q ss_pred             HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860          181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM  260 (417)
Q Consensus       181 ~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  260 (417)
                      -+.+..|+++.|++.|.+...-    .+-....||.-..++.-.|+        .++|++-+++..+..-.-+...+.+.
T Consensus        51 valaE~g~Ld~AlE~F~qal~l----~P~raSayNNRAQa~RLq~~--------~e~ALdDLn~AleLag~~trtacqa~  118 (175)
T KOG4555|consen   51 IALAEAGDLDGALELFGQALCL----APERASAYNNRAQALRLQGD--------DEEALDDLNKALELAGDQTRTACQAF  118 (175)
T ss_pred             HHHHhccchHHHHHHHHHHHHh----cccchHhhccHHHHHHHcCC--------hHHHHHHHHHHHHhcCccchHHHHHH
Confidence            4567889999999999998864    34567889999999999999        99999888887764323344444443


Q ss_pred             H---HHHHhcCCHHHHHHHHHHhhh
Q 014860          261 I---KGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       261 i---~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      +   ..|...|+-+.|..-|+...+
T Consensus       119 vQRg~lyRl~g~dd~AR~DFe~AA~  143 (175)
T KOG4555|consen  119 VQRGLLYRLLGNDDAARADFEAAAQ  143 (175)
T ss_pred             HHHHHHHHHhCchHHHHHhHHHHHH
Confidence            3   456778888888888887766

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=92.09  E-value=7.7  Score=36.04  Aligned_cols=125  Identities=11%  Similarity=0.026  Sum_probs=89.4

Q ss_pred             HHHHhcCCHHHHHHHHHHhhhhC----CCC---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014860          262 KGYILSNHVNDALRIFHQMGVVY----NYL---------PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY  328 (417)
Q Consensus       262 ~~~~~~g~~~~a~~~~~~m~~~~----~~~---------~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~  328 (417)
                      +.|.+.|++..|..-|+....-.    +..         .-..+++.+..+|.+.+++.+|++.-+.....+ ++|+...
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL  294 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL  294 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence            35778888888888877753311    111         234567888889999999999999999988775 3477777


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCC-HhHHHHHHHHHHHC
Q 014860          329 NSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRT-VLDEICRRGR-AGEAMKLLKELQNK  389 (417)
Q Consensus       329 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~-~~~A~~~~~~m~~~  389 (417)
                      --=-.+|...|+++.|...|+++.+.  .|+...-.. |+..--+... .+...++|..|...
T Consensus       295 yRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  295 YRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            77778999999999999999999985  666555544 4443333333 33457788888654

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=92.01  E-value=2.1  Score=39.64  Aligned_cols=262  Identities=11%  Similarity=0.038  Sum_probs=138.1

Q ss_pred             HHHHHHHHH--HHHccCChhHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHh--HhCCCCCCC
Q 014860          137 ASTYHIMTR--KLGAAKMYQEMDDVVNQMLATPSFCGT----EALYNTIIYFFAEARKLSRAVYVFKYM--KNSRNLECR  208 (417)
Q Consensus       137 ~~~~~~li~--~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m--~~~~~~g~~  208 (417)
                      ...+...+.  -+++.|+......+|+..++.|.  .|    ..+|..|-.+|.-.+++++|+++-..=  ..+. .|-+
T Consensus        15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGT--eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~-lgdk   91 (639)
T KOG1130|consen   15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGT--EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARL-LGDK   91 (639)
T ss_pred             hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcc--hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHH-hcch
Confidence            334444443  47899999999999999999876  33    345777778888888999998854311  0000 0000


Q ss_pred             -CCHHHHHHHHHHHHhcCCccch---hhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------------
Q 014860          209 -PSIRSYNILFTAFLSRGKNTYI---NHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH---------------  269 (417)
Q Consensus       209 -p~~~~~~~li~~~~~~g~~~~~---~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~---------------  269 (417)
                       -...+...|-..+--.|..+.+   -...++-|.++=++..+      ...+-.+-..|...|+               
T Consensus        92 lGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e------~RAlYNlgnvYhakGk~~g~~~pee~g~f~~  165 (639)
T KOG1130|consen   92 LGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLE------SRALYNLGNVYHAKGKCTGLEAPEEKGAFNA  165 (639)
T ss_pred             hccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhh------hHHHhhhhhhhhhcccccCCCChhhcccccH
Confidence             0111111122222222220000   00003333333333322      2233334444443332               


Q ss_pred             -----HHHHHHHHHHhhh---hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCCC-CHHHHHHHHHHH
Q 014860          270 -----VNDALRIFHQMGV---VYN-YLPNSFSYDYLIHGLCAQGRTKNARELCDEMK----RKGFVP-SSKSYNSLVSAL  335 (417)
Q Consensus       270 -----~~~a~~~~~~m~~---~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~----~~g~~p-~~~~~~~li~~~  335 (417)
                           ++.|.++|.+-.+   +.| -..-...|..|-+.|.-.|+++.|+...+.-.    +-|-+. ....+..+-.++
T Consensus       166 ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~h  245 (639)
T KOG1130|consen  166 EVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCH  245 (639)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhh
Confidence                 3344444432211   111 01122345566666667788998877654322    223222 235677788889


Q ss_pred             HhcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC------CCChhhHHHHHHHH
Q 014860          336 ALNGEVEETVKNLWEMIEK----Q-RPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN------LIDGYTYTKLLDVL  404 (417)
Q Consensus       336 ~~~g~~~~A~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~------~p~~~t~~~ll~~~  404 (417)
                      .-.|+++.|.+.|+.-...    | ..........|-+.|.-..++++|..++.+-..-.      +-....|.+|-.++
T Consensus       246 iflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~  325 (639)
T KOG1130|consen  246 IFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAF  325 (639)
T ss_pred             hhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            9999999999988875432    2 12233455667788888888888888876543211      11444555555555


Q ss_pred             Hhh
Q 014860          405 EDD  407 (417)
Q Consensus       405 ~~~  407 (417)
                      ..-
T Consensus       326 ~al  328 (639)
T KOG1130|consen  326 NAL  328 (639)
T ss_pred             Hhh
Confidence            433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=91.98  E-value=13  Score=36.24  Aligned_cols=158  Identities=14%  Similarity=0.124  Sum_probs=92.3

Q ss_pred             HHHHccCChhHHHHHHHHHHcCCCCCCC-----HHHHHHHHHHHHH----hCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860          145 RKLGAAKMYQEMDDVVNQMLATPSFCGT-----EALYNTIIYFFAE----ARKLSRAVYVFKYMKNSRNLECRPSIRSYN  215 (417)
Q Consensus       145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~  215 (417)
                      ...+=.|+-+.+.+.+....+.+.....     ...|+.++..++.    ....+.|.++++.+.++     .|+...|.
T Consensus       196 ~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~-----yP~s~lfl  270 (468)
T PF10300_consen  196 SFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR-----YPNSALFL  270 (468)
T ss_pred             hhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh-----CCCcHHHH
Confidence            3445667888888888777665443111     1234444444433    34577788888888876     67766665


Q ss_pred             HHHH-HHHhcCCccchhhhhHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860          216 ILFT-AFLSRGKNTYINHVYMETIRCLFKQMVNDGI---EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF  291 (417)
Q Consensus       216 ~li~-~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  291 (417)
                      ..-. .+...|+        .++|++.|++......   +.....+--+.-.+.-.++|++|.+.|..+.+....  +..
T Consensus       271 ~~~gR~~~~~g~--------~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W--Ska  340 (468)
T PF10300_consen  271 FFEGRLERLKGN--------LEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW--SKA  340 (468)
T ss_pred             HHHHHHHHHhcC--------HHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc--HHH
Confidence            5443 3445666        8888888886553111   122233344555667778888888888888763322  233


Q ss_pred             HHHHHHHH-HHhcCCH-------HHHHHHHHHHH
Q 014860          292 SYDYLIHG-LCAQGRT-------KNARELCDEMK  317 (417)
Q Consensus       292 ~~~~li~~-~~~~g~~-------~~A~~l~~~m~  317 (417)
                      +|..+..+ +...|+.       ++|.++|.+..
T Consensus       341 ~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  341 FYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            33333332 2345555       67777777654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=91.66  E-value=0.68  Score=28.08  Aligned_cols=27  Identities=22%  Similarity=0.292  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860          363 YRTVLDEICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       363 ~~~li~~~~~~g~~~~A~~~~~~m~~~  389 (417)
                      +..+..+|.+.|++++|.++|++..+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344444455555555555555555444

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.51  E-value=6.6  Score=31.98  Aligned_cols=133  Identities=14%  Similarity=0.193  Sum_probs=86.2

Q ss_pred             HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CH
Q 014860          193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN--HV  270 (417)
Q Consensus       193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~  270 (417)
                      .+.++.+.+.   +++|+...|..+|..+.+.|+        ..    .+.++...++-+|.......+-.+....  -.
T Consensus        14 lEYirSl~~~---~i~~~~~L~~lli~lLi~~~~--------~~----~L~qllq~~Vi~DSk~lA~~LLs~~~~~~~~~   78 (167)
T PF07035_consen   14 LEYIRSLNQH---NIPVQHELYELLIDLLIRNGQ--------FS----QLHQLLQYHVIPDSKPLACQLLSLGNQYPPAY   78 (167)
T ss_pred             HHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCC--------HH----HHHHHHhhcccCCcHHHHHHHHHhHccChHHH
Confidence            3445555555   789999999999999999998        44    4466677777788777666554443322  13


Q ss_pred             HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860          271 NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWE  350 (417)
Q Consensus       271 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  350 (417)
                      ..|.+++.++..         .+..+++.+...|++-+|.++.+.....    +......++.+-.+.++...-..+|+-
T Consensus        79 Ql~lDMLkRL~~---------~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~f  145 (167)
T PF07035_consen   79 QLGLDMLKRLGT---------AYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRF  145 (167)
T ss_pred             HHHHHHHHHhhh---------hHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHH
Confidence            445555555543         3667888899999999999998875332    111234456666666665554444444


Q ss_pred             HHH
Q 014860          351 MIE  353 (417)
Q Consensus       351 m~~  353 (417)
                      ..+
T Consensus       146 f~~  148 (167)
T PF07035_consen  146 FEE  148 (167)
T ss_pred             HHH
Confidence            444

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=91.47  E-value=5.8  Score=31.25  Aligned_cols=79  Identities=14%  Similarity=0.115  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHH
Q 014860          326 KSYNSLVSALALNGEVEETVKNLWEMIEK--QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLD  402 (417)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~  402 (417)
                      ..|..- ....+.|++++|.+.|+.+...  .-+......-.|+.+|.+.|++++|...+++.++.+. -...-|...+.
T Consensus        12 ~ly~~a-~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~   90 (142)
T PF13512_consen   12 ELYQEA-QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence            344443 3445779999999999999987  2233445667789999999999999999999999887 24455666666


Q ss_pred             HHH
Q 014860          403 VLE  405 (417)
Q Consensus       403 ~~~  405 (417)
                      +|+
T Consensus        91 gL~   93 (142)
T PF13512_consen   91 GLS   93 (142)
T ss_pred             HHH
Confidence            655

>PRK09687 putative lyase; Provisional

Probab=91.40  E-value=10  Score=34.00  Aligned_cols=240  Identities=13%  Similarity=0.055  Sum_probs=152.5

Q ss_pred             CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH----HHHHHHHHHhHhCCCCCCCCC
Q 014860          135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL----SRAVYVFKYMKNSRNLECRPS  210 (417)
Q Consensus       135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~----~~a~~~~~~m~~~~~~g~~p~  210 (417)
                      +|.......+.++...|.. ++...+..+...    +|...-...+.++++.|+.    +++...+..+...     .++
T Consensus        35 ~d~~vR~~A~~aL~~~~~~-~~~~~l~~ll~~----~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~-----D~d  104 (280)
T PRK09687         35 HNSLKRISSIRVLQLRGGQ-DVFRLAIELCSS----KNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE-----DKS  104 (280)
T ss_pred             CCHHHHHHHHHHHHhcCcc-hHHHHHHHHHhC----CCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc-----CCC
Confidence            4666666677777777653 333334444433    5667777778888888873    4677778777433     456


Q ss_pred             HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCH
Q 014860          211 IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNS  290 (417)
Q Consensus       211 ~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~  290 (417)
                      ...-...+.++...+.....   ....+.+.+.....   .++..+--..+.++++.++. .+...+-.+.+    .+|.
T Consensus       105 ~~VR~~A~~aLG~~~~~~~~---~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~----d~~~  173 (280)
T PRK09687        105 ACVRASAINATGHRCKKNPL---YSPKIVEQSQITAF---DKSTNVRFAVAFALSVINDE-AAIPLLINLLK----DPNG  173 (280)
T ss_pred             HHHHHHHHHHHhcccccccc---cchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCCH-HHHHHHHHHhc----CCCH
Confidence            66666667777665531100   01233444433333   34666777788888888874 55555555554    2666


Q ss_pred             HHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014860          291 FSYDYLIHGLCAQG-RTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDE  369 (417)
Q Consensus       291 ~~~~~li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  369 (417)
                      ..-...+.++++.+ ....+...+..+..   .+|..+-...+.++.+.|+ ..|...+-+..+.+   +  .....+.+
T Consensus       174 ~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~-~~av~~Li~~L~~~---~--~~~~a~~A  244 (280)
T PRK09687        174 DVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKD-KRVLSVLIKELKKG---T--VGDLIIEA  244 (280)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCC-hhHHHHHHHHHcCC---c--hHHHHHHH
Confidence            67777777777764 24456666666664   3467777778888888888 45666666666653   2  23567888


Q ss_pred             HHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHh
Q 014860          370 ICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED  406 (417)
Q Consensus       370 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~  406 (417)
                      +...|.. +|...+..+.+.. +|...-...+.+|.+
T Consensus       245 Lg~ig~~-~a~p~L~~l~~~~-~d~~v~~~a~~a~~~  279 (280)
T PRK09687        245 AGELGDK-TLLPVLDTLLYKF-DDNEIITKAIDKLKR  279 (280)
T ss_pred             HHhcCCH-hHHHHHHHHHhhC-CChhHHHHHHHHHhc
Confidence            9999985 7888888888743 377777777777754

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.19  E-value=6  Score=32.72  Aligned_cols=97  Identities=11%  Similarity=0.064  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHH
Q 014860          291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS--SKSYNSLVSALALNGEVEETVKNLWEMIEK---QRPVDFITYRT  365 (417)
Q Consensus       291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~~~~~~  365 (417)
                      ..+..+...|++.|+.++|.+.|.++.+....+.  ...+-.+|+.....|++..+.....+....   |-.++...--.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            3455566666666666666666666665533332  334555666666667776666666555443   22222222111


Q ss_pred             HHH--HHHHcCCHhHHHHHHHHHH
Q 014860          366 VLD--EICRRGRAGEAMKLLKELQ  387 (417)
Q Consensus       366 li~--~~~~~g~~~~A~~~~~~m~  387 (417)
                      ...  .+...+++.+|-+.|-+..
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccC
Confidence            222  2345678888887776654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.18  E-value=6.4  Score=34.53  Aligned_cols=104  Identities=9%  Similarity=0.004  Sum_probs=79.2

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-HHHHHHHH
Q 014860          103 NNEELCNVMTLQEDPLVCLELFNWASKQP-RFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-EALYNTII  180 (417)
Q Consensus       103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li  180 (417)
                      .|+.-+..+ ..|++..|...|....+.. +-.-....+--|...+...|++++|..+|..+.+..+..|. ....-.|.
T Consensus       144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            366666655 4566999999999886543 11234455556889999999999999999999887554333 46777888


Q ss_pred             HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHH
Q 014860          181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIR  212 (417)
Q Consensus       181 ~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~  212 (417)
                      ....+.|+.++|..+|++..++     .|+..
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~-----YP~t~  249 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR-----YPGTD  249 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH-----CCCCH
Confidence            8899999999999999999987     56544

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.08  E-value=2.9  Score=37.33  Aligned_cols=105  Identities=11%  Similarity=0.169  Sum_probs=67.0

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 014860          285 NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG---FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFI  361 (417)
Q Consensus       285 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~  361 (417)
                      |......+...++..-....+++.++..+-.++...   ..|+... .+.++.|. .-+.++++.++..=+..|+-||-.
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf  136 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF  136 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence            444555566666666666677777777777666431   1222211 12223222 235567777777777778888888


Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860          362 TYRTVLDEICRRGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       362 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  391 (417)
                      ++..+|+.+.+.+++.+|.++...|..+..
T Consensus       137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe~  166 (418)
T KOG4570|consen  137 TFCLLMDSFLKKENYKDAASVVTEVMMQEA  166 (418)
T ss_pred             hHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence            888888888888888888888777776654

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=90.99  E-value=2  Score=31.11  Aligned_cols=62  Identities=13%  Similarity=0.176  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 014860          235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIH  298 (417)
Q Consensus       235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  298 (417)
                      .-++.+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+..+.+.|.  +...|..++.
T Consensus        23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq   84 (103)
T cd00923          23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence            4556666677777778888888888888888888888888888887753332  3445666553

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=90.87  E-value=0.78  Score=27.79  Aligned_cols=26  Identities=4%  Similarity=0.037  Sum_probs=12.5

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860          176 YNTIIYFFAEARKLSRAVYVFKYMKN  201 (417)
Q Consensus       176 ~~~li~~~~~~g~~~~a~~~~~~m~~  201 (417)
                      +..+...|.+.|++++|.++|++..+
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~   29 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALA   29 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            34444444445555555555544444

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=90.78  E-value=24  Score=37.66  Aligned_cols=116  Identities=15%  Similarity=0.180  Sum_probs=73.7

Q ss_pred             CCCHHHHHHHH----HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 014860          208 RPSIRSYNILF----TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVV  283 (417)
Q Consensus       208 ~p~~~~~~~li----~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  283 (417)
                      .|+...+..+.    ..+.....        +++|.-.|+..-+         ..--+.+|..+|+|++|+.+..++...
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~--------~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~  994 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELM--------SDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG  994 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhcc--------ccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC
Confidence            34544444444    44445565        6777666654332         234577888899999999999888651


Q ss_pred             CCCCCCHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860          284 YNYLPNSFS--YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMI  352 (417)
Q Consensus       284 ~~~~~~~~~--~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  352 (417)
                          .+...  --.|+.-+...++.-+|-++..+-.+.        ..-.+..||+...+++|.++-..-.
T Consensus       995 ----~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen  995 ----KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             ----HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence                23222  256777788888888888888877653        2233455666677888777655433

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.77  E-value=10  Score=32.83  Aligned_cols=171  Identities=15%  Similarity=0.149  Sum_probs=96.8

Q ss_pred             cCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH--HHHHHHHHHHHhcCCc
Q 014860          150 AKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSI--RSYNILFTAFLSRGKN  227 (417)
Q Consensus       150 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~--~~~~~li~~~~~~g~~  227 (417)
                      ...++.|.-+..++.+..   --+..|+....+|.++|..+.|-..++..-+.-. ++.|+.  ..|.--+...-..++ 
T Consensus        71 AKayEqaamLake~~kls---Evvdl~eKAs~lY~E~GspdtAAmaleKAak~le-nv~Pd~AlqlYqralavve~~dr-  145 (308)
T KOG1585|consen   71 AKAYEQAAMLAKELSKLS---EVVDLYEKASELYVECGSPDTAAMALEKAAKALE-NVKPDDALQLYQRALAVVEEDDR-  145 (308)
T ss_pred             HHHHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHhccch-
Confidence            344555666666666543   2346788888999999999888877776554210 233332  123322222222222 


Q ss_pred             cchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCCCC-HHHHHHHHHHHHhc
Q 014860          228 TYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVV---YNYLPN-SFSYDYLIHGLCAQ  303 (417)
Q Consensus       228 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~-~~~~~~li~~~~~~  303 (417)
                             ...|.+               .+..+-..+.+..++++|-..|..-..-   ..--++ -..|-..|-.+...
T Consensus       146 -------~~ma~e---------------l~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~  203 (308)
T KOG1585|consen  146 -------DQMAFE---------------LYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYA  203 (308)
T ss_pred             -------HHHHHH---------------HHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhH
Confidence                   222222               2333445566666777665554433210   011122 23456666677778


Q ss_pred             CCHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860          304 GRTKNARELCDEMKRKG---FVPSSKSYNSLVSALALNGEVEETVKNL  348 (417)
Q Consensus       304 g~~~~A~~l~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~A~~~~  348 (417)
                      .++..|+..+++--+.+   -.-+..+...||.+| ..|+.+++.+++
T Consensus       204 ~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kvl  250 (308)
T KOG1585|consen  204 HDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKVL  250 (308)
T ss_pred             HHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHHH
Confidence            89999999999855432   223567888888887 457777765554

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=90.59  E-value=2.4  Score=30.70  Aligned_cols=50  Identities=10%  Similarity=0.099  Sum_probs=36.7

Q ss_pred             ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860          152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      +.=++.+-++.+...+.+ |++.+..+.+++|-+.+++..|+++|+-.+.+
T Consensus        22 D~we~rr~mN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~vK~K   71 (103)
T cd00923          22 DGWELRRGLNNLFGYDLV-PEPKVIEAALRACRRVNDFALAVRILEAIKDK   71 (103)
T ss_pred             cHHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            334556666667677777 78888888888888888888888888877753

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.54  E-value=3  Score=40.59  Aligned_cols=98  Identities=16%  Similarity=0.073  Sum_probs=49.4

Q ss_pred             HhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860          185 EARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGY  264 (417)
Q Consensus       185 ~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  264 (417)
                      +.|+++.|.++..+..         +..-|..|-++....++        +..|.+.|....+         |..|+-.+
T Consensus       649 ~lgrl~iA~~la~e~~---------s~~Kw~~Lg~~al~~~~--------l~lA~EC~~~a~d---------~~~LlLl~  702 (794)
T KOG0276|consen  649 KLGRLDIAFDLAVEAN---------SEVKWRQLGDAALSAGE--------LPLASECFLRARD---------LGSLLLLY  702 (794)
T ss_pred             hcCcHHHHHHHHHhhc---------chHHHHHHHHHHhhccc--------chhHHHHHHhhcc---------hhhhhhhh
Confidence            4566666655554443         33456666666666666        6666665554442         33455555


Q ss_pred             HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860          265 ILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDE  315 (417)
Q Consensus       265 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~  315 (417)
                      ...|+-+....+-...++ .|. .     |....+|...|+++++.+++.+
T Consensus       703 t~~g~~~~l~~la~~~~~-~g~-~-----N~AF~~~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  703 TSSGNAEGLAVLASLAKK-QGK-N-----NLAFLAYFLSGDYEECLELLIS  746 (794)
T ss_pred             hhcCChhHHHHHHHHHHh-hcc-c-----chHHHHHHHcCCHHHHHHHHHh
Confidence            555555444444444433 222 1     2223334455666666555543

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=90.45  E-value=5.5  Score=29.21  Aligned_cols=61  Identities=13%  Similarity=0.198  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 014860          236 ETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIH  298 (417)
Q Consensus       236 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  298 (417)
                      -+..+-++.+....+.|++.+..+.+.+|.+.+++..|.++|+.++.+.+..-+  .|..++.
T Consensus        27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~--~Y~~~lq   87 (108)
T PF02284_consen   27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKE--IYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TT--HHHHHHH
T ss_pred             HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHH--HHHHHHH
Confidence            355556666666777888888888888888888888888888888775543333  5666653

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.31  E-value=0.81  Score=26.33  Aligned_cols=23  Identities=17%  Similarity=0.245  Sum_probs=11.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHH
Q 014860          328 YNSLVSALALNGEVEETVKNLWE  350 (417)
Q Consensus       328 ~~~li~~~~~~g~~~~A~~~~~~  350 (417)
                      |+.|-..|.+.|++++|.+++++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            44455555555555555555555

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=90.25  E-value=18  Score=36.17  Aligned_cols=189  Identities=13%  Similarity=0.006  Sum_probs=113.3

Q ss_pred             hhHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHHhCCHHHHHHHHHHhHh-------CCCCCCCCCHHHHHHHHHHHHhc
Q 014860          153 YQEMDDVVNQMLATPSFCGTEALYNTIIYF-FAEARKLSRAVYVFKYMKN-------SRNLECRPSIRSYNILFTAFLSR  224 (417)
Q Consensus       153 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~-------~~~~g~~p~~~~~~~li~~~~~~  224 (417)
                      ...+.+.++...+.+...+-...-.....+ +....+.+.|+..|+.+.+       .   |   ......-+-.+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~---~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK---G---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh---c---CCccccHHHHHHhcC
Confidence            567888888888886541111122222233 4566889999999999977       3   3   233455666666664


Q ss_pred             CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHH--
Q 014860          225 GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL-SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLC--  301 (417)
Q Consensus       225 g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~--  301 (417)
                      ......   ..+.|+.+|...-+.| .|+....-..+..... ..+...|.++|....+ .|. +...-+.+++....  
T Consensus       302 ~~~~~~---d~~~A~~~~~~aA~~g-~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~-~G~-~~A~~~la~~y~~G~g  375 (552)
T KOG1550|consen  302 LGVEKI---DYEKALKLYTKAAELG-NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAK-AGH-ILAIYRLALCYELGLG  375 (552)
T ss_pred             CCCccc---cHHHHHHHHHHHHhcC-CchHHHHHHHHHHcCCccccHHHHHHHHHHHHH-cCC-hHHHHHHHHHHHhCCC
Confidence            421110   1788999999988888 4565555444433333 3567899999998877 443 33333333332222  


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 014860          302 AQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQ  355 (417)
Q Consensus       302 ~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  355 (417)
                      ...+.+.|..++...-+.| .|-..--...+..+.. +..+.+.-.+..+.+.|
T Consensus       376 v~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~g  427 (552)
T KOG1550|consen  376 VERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAELG  427 (552)
T ss_pred             cCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHhh
Confidence            3346788999998888887 3332222333344444 67777766666666654

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=90.23  E-value=13  Score=33.15  Aligned_cols=166  Identities=11%  Similarity=0.049  Sum_probs=112.3

Q ss_pred             ChhHHHHHHhcCCCCCCHHHHHH--HHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHH
Q 014860           87 DDTQFRCAVSELPPRFNNEELCN--VMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQML  164 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~~~~~~ll~--~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~  164 (417)
                      .++.+.+-+..+-....-..+-.  .+...++...|..+|.......  +-+...--.+...|...|+++.|..++..+.
T Consensus       118 Pesqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~--~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP  195 (304)
T COG3118         118 PESQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAA--PENSEAKLLLAECLLAAGDVEAAQAILAALP  195 (304)
T ss_pred             cHHHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhC--cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence            44556666655544311112222  2367899999999999887655  3456777788899999999999999999987


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHH
Q 014860          165 ATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQ  244 (417)
Q Consensus       165 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~  244 (417)
                      ..... .......+-|..+.++....+...+-.+.-..     +-|...--.+-..+...|+        .+.|.+.+-.
T Consensus       196 ~~~~~-~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad-----Pdd~~aa~~lA~~~~~~g~--------~e~Ale~Ll~  261 (304)
T COG3118         196 LQAQD-KAAHGLQAQIELLEQAAATPEIQDLQRRLAAD-----PDDVEAALALADQLHLVGR--------NEAALEHLLA  261 (304)
T ss_pred             ccchh-hHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC-----CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHH
Confidence            76433 22233345567777777777777777777664     3377777788888999999        8999887777


Q ss_pred             HHHCCC-CCCHHHHHHHHHHHHhcC
Q 014860          245 MVNDGI-EPDIFSLNSMIKGYILSN  268 (417)
Q Consensus       245 m~~~g~-~p~~~~~~~li~~~~~~g  268 (417)
                      +.+... --|...-..+++.+.--|
T Consensus       262 ~l~~d~~~~d~~~Rk~lle~f~~~g  286 (304)
T COG3118         262 LLRRDRGFEDGEARKTLLELFEAFG  286 (304)
T ss_pred             HHHhcccccCcHHHHHHHHHHHhcC
Confidence            664321 234455556666555555

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=90.10  E-value=0.75  Score=26.47  Aligned_cols=26  Identities=8%  Similarity=0.162  Sum_probs=21.0

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhH
Q 014860          175 LYNTIIYFFAEARKLSRAVYVFKYMK  200 (417)
Q Consensus       175 ~~~~li~~~~~~g~~~~a~~~~~~m~  200 (417)
                      +|+.|...|.+.|++++|+++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46788889999999999999998844

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=90.05  E-value=8.2  Score=30.60  Aligned_cols=63  Identities=5%  Similarity=0.025  Sum_probs=46.1

Q ss_pred             HHHHHHHHHH---HccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860          138 STYHIMTRKL---GAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       138 ~~~~~li~~~---~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      ...+.||...   ...++.+++..+++.|.-..+..+...++..++  +...|++++|.++|++..+.
T Consensus         8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561         8 RLLGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSS   73 (153)
T ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhcc
Confidence            3444444433   358899999999999987665445566666555  46889999999999999986

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=89.49  E-value=7.1  Score=36.25  Aligned_cols=125  Identities=13%  Similarity=0.083  Sum_probs=91.2

Q ss_pred             HHHhccCChhHHHHHHHHhhc----CCCCCC---------CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHH
Q 014860          109 NVMTLQEDPLVCLELFNWASK----QPRFRH---------DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEAL  175 (417)
Q Consensus       109 ~~l~~~~~~~~A~~~~~~~~~----~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  175 (417)
                      ..+-+.|++..|..-|+.+..    ..++.+         -..++..+.-.+.+.+.+..|.+..+..+..+.  .|...
T Consensus       216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~--~N~KA  293 (397)
T KOG0543|consen  216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELDP--NNVKA  293 (397)
T ss_pred             hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCC--CchhH
Confidence            355678889999888877543    222222         223466677778899999999999999999876  67777


Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc-CCccchhhhhHHHHHHHHHHHHH
Q 014860          176 YNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR-GKNTYINHVYMETIRCLFKQMVN  247 (417)
Q Consensus       176 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~-g~~~~~~~~~~~~a~~~~~~m~~  247 (417)
                      .--=..+|...|+++.|+..|+.+.+.     .|+...-+.=|..|.+. ..       +.+...++|..|..
T Consensus       294 LyRrG~A~l~~~e~~~A~~df~ka~k~-----~P~Nka~~~el~~l~~k~~~-------~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  294 LYRRGQALLALGEYDLARDDFQKALKL-----EPSNKAARAELIKLKQKIRE-------YEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHh-----CCCcHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhh
Confidence            777788999999999999999999985     67666655555544433 32       24555778888875

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=89.28  E-value=22  Score=34.36  Aligned_cols=180  Identities=8%  Similarity=-0.006  Sum_probs=120.0

Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHH
Q 014860          134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRS  213 (417)
Q Consensus       134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~  213 (417)
                      ..|......++..++.+-.++-++.+..+|...|   .+...+-.++..|... .-++-..+++++.+.    .--|++.
T Consensus        63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~---e~kmal~el~q~y~en-~n~~l~~lWer~ve~----dfnDvv~  134 (711)
T COG1747          63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG---ESKMALLELLQCYKEN-GNEQLYSLWERLVEY----DFNDVVI  134 (711)
T ss_pred             cccchHHHHHHHHhccchHHHHHHHHHHHHHHhc---chHHHHHHHHHHHHhc-CchhhHHHHHHHHHh----cchhHHH
Confidence            4677788888888988888888888888888877   5667788888888888 566777888877775    1223333


Q ss_pred             HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC
Q 014860          214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-----PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP  288 (417)
Q Consensus       214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~  288 (417)
                      -.-|...|-+ ++        ...+...|......=++     .-...|.-++...  ..+.+....+...+..+.|...
T Consensus       135 ~ReLa~~yEk-ik--------~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~  203 (711)
T COG1747         135 GRELADKYEK-IK--------KSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGR  203 (711)
T ss_pred             HHHHHHHHHH-hc--------hhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccch
Confidence            3444444444 66        66677777666543221     1123444444321  3467777777777777677777


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS  333 (417)
Q Consensus       289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~  333 (417)
                      -.+.+.-+-.-|....++.+|.+++..+.+..-+ |...-..++.
T Consensus       204 ~~Vl~qdv~~~Ys~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~  247 (711)
T COG1747         204 GSVLMQDVYKKYSENENWTEAIRILKHILEHDEK-DVWARKEIIE  247 (711)
T ss_pred             HHHHHHHHHHHhccccCHHHHHHHHHHHhhhcch-hhhHHHHHHH
Confidence            7777777777888888888888888877765422 4433333443

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=89.28  E-value=18  Score=33.42  Aligned_cols=53  Identities=11%  Similarity=0.048  Sum_probs=24.5

Q ss_pred             HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860          108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA  165 (417)
Q Consensus       108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  165 (417)
                      .++.-+.|+|+..-+...... ..  .++...|..+...  +.++++++....+....
T Consensus         5 ~eaaWrl~~Wd~l~~~~~~~~-~~--~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~   57 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEYLSQSN-ED--SPEYSFYRALLAL--RQGDYDEAKKYIEKARQ   57 (352)
T ss_pred             HHHHHhcCChhhHHHHHhhcc-CC--ChhHHHHHHHHHH--hCccHHHHHHHHHHHHH
Confidence            344455666666444433331 11  1233333333332  56666666665555544

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=89.02  E-value=4.4  Score=36.28  Aligned_cols=104  Identities=11%  Similarity=0.146  Sum_probs=67.5

Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC--CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014860          247 NDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY--NYLP--NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV  322 (417)
Q Consensus       247 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~--~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~  322 (417)
                      ..|......+...++..-....+++++...+-.++...  ...+  +.++|-.++    -.-+.++++.++..=.+-|+-
T Consensus        57 ~~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF  132 (418)
T KOG4570|consen   57 ERGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIF  132 (418)
T ss_pred             hcCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccc
Confidence            34555666666777766666777888887777775421  1112  223333322    223566777777777777888


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          323 PSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       323 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      ||..+++.+|+.+.+.+++.+|..+...|...
T Consensus       133 ~dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q  164 (418)
T KOG4570|consen  133 PDQFTFCLLMDSFLKKENYKDAASVVTEVMMQ  164 (418)
T ss_pred             cchhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            88888888888888888888887777666554

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=88.66  E-value=11  Score=29.95  Aligned_cols=93  Identities=11%  Similarity=0.183  Sum_probs=45.7

Q ss_pred             HHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHhhhhCC----CCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHH
Q 014860          245 MVNDGIEPDIF--SLNSMIKGYILSNHVNDALRIFHQMGVVYN----YLPNSFSYDYLIHGLCAQGR-TKNARELCDEMK  317 (417)
Q Consensus       245 m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~~~~~~~~~~li~~~~~~g~-~~~A~~l~~~m~  317 (417)
                      |.+.+..++..  ..|+++.-....+.+.....+++.+.....    -..+...|.+++.+..+..- ---+..+|.-|+
T Consensus        28 ~~~~~~~~~~k~~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk  107 (145)
T PF13762_consen   28 MQEENASQSTKTIFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLK  107 (145)
T ss_pred             hhhcccChhHHHHHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHH
Confidence            34444444443  346666666666667666666666632100    01233345555555544333 223445555555


Q ss_pred             HCCCCCCHHHHHHHHHHHHh
Q 014860          318 RKGFVPSSKSYNSLVSALAL  337 (417)
Q Consensus       318 ~~g~~p~~~~~~~li~~~~~  337 (417)
                      +.+.+++..-|..+|.++.+
T Consensus       108 ~~~~~~t~~dy~~li~~~l~  127 (145)
T PF13762_consen  108 KNDIEFTPSDYSCLIKAALR  127 (145)
T ss_pred             HcCCCCCHHHHHHHHHHHHc
Confidence            54455555555555555444

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=88.61  E-value=21  Score=33.41  Aligned_cols=272  Identities=13%  Similarity=0.026  Sum_probs=140.3

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA  192 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a  192 (417)
                      +..++..|+..+..+..-.  +.+..-|..-...+...++++++.--.+.-.+...  .......-.-+++...++..+|
T Consensus        61 k~k~Y~nal~~yt~Ai~~~--pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd--~~~k~~~r~~~c~~a~~~~i~A  136 (486)
T KOG0550|consen   61 KQKTYGNALKNYTFAIDMC--PDNASYYSNRAATLMMLGRFEEALGDARQSVRLKD--GFSKGQLREGQCHLALSDLIEA  136 (486)
T ss_pred             HHhhHHHHHHHHHHHHHhC--ccchhhhchhHHHHHHHHhHhhcccchhhheecCC--CccccccchhhhhhhhHHHHHH
Confidence            4556677777777664322  33455555555556666666666554444443322  1112222233333333333333


Q ss_pred             HHHHH------------HhHhCCC-CCCCCCHHHHHHHH-HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          193 VYVFK------------YMKNSRN-LECRPSIRSYNILF-TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN  258 (417)
Q Consensus       193 ~~~~~------------~m~~~~~-~g~~p~~~~~~~li-~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  258 (417)
                      .+.|+            .....-. ..-+|...+|-.+= .++...|+        .++|.+.--..++..   ....+.
T Consensus       137 ~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~--------~~~a~~ea~~ilkld---~~n~~a  205 (486)
T KOG0550|consen  137 EEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGD--------YDEAQSEAIDILKLD---ATNAEA  205 (486)
T ss_pred             HHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhccc--------chhHHHHHHHHHhcc---cchhHH
Confidence            33333            1111100 01123334444332 23445566        666666555544332   122333


Q ss_pred             HHHHHHH--hcCCHHHHHHHHHHhhhhCCCCCCHHH-------------HHHHHHHHHhcCCHHHHHHHHHHHHHC---C
Q 014860          259 SMIKGYI--LSNHVNDALRIFHQMGVVYNYLPNSFS-------------YDYLIHGLCAQGRTKNARELCDEMKRK---G  320 (417)
Q Consensus       259 ~li~~~~--~~g~~~~a~~~~~~m~~~~~~~~~~~~-------------~~~li~~~~~~g~~~~A~~l~~~m~~~---g  320 (417)
                      .++.+.+  -.++.+.|...|++-..   +.|+...             |..--+-..+.|++.+|.+.|.+....   +
T Consensus       206 l~vrg~~~yy~~~~~ka~~hf~qal~---ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n  282 (486)
T KOG0550|consen  206 LYVRGLCLYYNDNADKAINHFQQALR---LDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN  282 (486)
T ss_pred             HHhcccccccccchHHHHHHHhhhhc---cChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence            3443333  35666777777766543   2233221             111222345778888888888887653   4


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-H--HHHHHcCCHhHHHHHHHHHHHCCC-C-Chh
Q 014860          321 FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTV-L--DEICRRGRAGEAMKLLKELQNKNL-I-DGY  395 (417)
Q Consensus       321 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-i--~~~~~~g~~~~A~~~~~~m~~~~~-p-~~~  395 (417)
                      ++|+...|........+.|+.++|+.--++..+-    |..-...+ .  .++...++|++|.+-++...+... + +..
T Consensus       283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~  358 (486)
T KOG0550|consen  283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRR  358 (486)
T ss_pred             cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHH
Confidence            5566777777777777888888888777666653    43322222 2  234456778888888777665544 2 555


Q ss_pred             hHHHHHHHHHh
Q 014860          396 TYTKLLDVLED  406 (417)
Q Consensus       396 t~~~ll~~~~~  406 (417)
                      ++.....+|.+
T Consensus       359 ~l~~A~~aLkk  369 (486)
T KOG0550|consen  359 TLREAQLALKK  369 (486)
T ss_pred             HHHHHHHHHHH
Confidence            66655555553

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.46  E-value=29  Score=34.70  Aligned_cols=180  Identities=14%  Similarity=0.087  Sum_probs=111.7

Q ss_pred             HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHH-----HHhcCCccchhhhhHHHHHHHHHHHHH-------CCCCCCHHH
Q 014860          189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTA-----FLSRGKNTYINHVYMETIRCLFKQMVN-------DGIEPDIFS  256 (417)
Q Consensus       189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~-----~~~~g~~~~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~  256 (417)
                      ...|.++++...+.+      +...-..+...     +....+        .+.|+.+|+...+       .|   ....
T Consensus       228 ~~~a~~~~~~~a~~g------~~~a~~~~g~~y~~G~~g~~~d--------~e~a~~~l~~aa~~~~~~a~~~---~~~a  290 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLG------HSEAQYALGICYLAGTYGVTQD--------LESAIEYLKLAAESFKKAATKG---LPPA  290 (552)
T ss_pred             hhHHHHHHHHHHhhc------chHHHHHHHHHHhhcccccccc--------HHHHHHHHHHHHHHHHHHHhhc---CCcc
Confidence            567889999888863      33322222222     334555        9999999998876       55   3334


Q ss_pred             HHHHHHHHHhcC-----CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860          257 LNSMIKGYILSN-----HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA-QGRTKNARELCDEMKRKGFVPSSKSYNS  330 (417)
Q Consensus       257 ~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~l~~~m~~~g~~p~~~~~~~  330 (417)
                      ..-+-.+|.+..     +.+.|..++..... .|. |+....-..+.-... ..+...|.++|...-..|..   ..+-.
T Consensus       291 ~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~-~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~  365 (552)
T KOG1550|consen  291 QYGLGRLYLQGLGVEKIDYEKALKLYTKAAE-LGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYR  365 (552)
T ss_pred             ccHHHHHHhcCCCCccccHHHHHHHHHHHHh-cCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHH
Confidence            555555665532     66779999988876 444 555444433333333 35678999999999988843   23333


Q ss_pred             HHHHHH----hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 014860          331 LVSALA----LNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI  392 (417)
Q Consensus       331 li~~~~----~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p  392 (417)
                      +..+|.    -..+.+.|..++.+..+.|....... ...+..+.. +..+.+.-.+..+...|..
T Consensus       366 la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~-~~~~~~~g~-~~~~~~~~~~~~~a~~g~~  429 (552)
T KOG1550|consen  366 LALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYL-LGAFYEYGV-GRYDTALALYLYLAELGYE  429 (552)
T ss_pred             HHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHH-HHHHHHHcc-ccccHHHHHHHHHHHhhhh
Confidence            333332    23478899999999999873222222 233344444 7888888888888777764

>PRK11906 transcriptional regulator; Provisional

Probab=88.38  E-value=11  Score=35.95  Aligned_cols=117  Identities=13%  Similarity=0.077  Sum_probs=83.1

Q ss_pred             CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 014860          115 EDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVY  194 (417)
Q Consensus       115 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  194 (417)
                      .+..+|.++-+...+..  +-|..+...+..+++-.++++.+..+|++.....+  ....+|....-...-+|+.++|.+
T Consensus       318 ~~~~~a~~~A~rAveld--~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P--n~A~~~~~~~~~~~~~G~~~~a~~  393 (458)
T PRK11906        318 LAAQKALELLDYVSDIT--TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST--DIASLYYYRALVHFHNEKIEEARI  393 (458)
T ss_pred             HHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC--ccHHHHHHHHHHHHHcCCHHHHHH
Confidence            34556777777776555  56888888888888888999999999999998775  334455555555567899999999


Q ss_pred             HHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860          195 VFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV  246 (417)
Q Consensus       195 ~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~  246 (417)
                      .+++..+..  ..+.........+..|+..+         ++.|.++|.+-.
T Consensus       394 ~i~~alrLs--P~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~  434 (458)
T PRK11906        394 CIDKSLQLE--PRRRKAVVIKECVDMYVPNP---------LKNNIKLYYKET  434 (458)
T ss_pred             HHHHHhccC--chhhHHHHHHHHHHHHcCCc---------hhhhHHHHhhcc
Confidence            999966541  12223344445556777777         788888886543

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=87.71  E-value=9.1  Score=28.11  Aligned_cols=45  Identities=18%  Similarity=0.157  Sum_probs=18.8

Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          310 RELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       310 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      .+-++.+....+.|+.....+.+++|.+..++..|.++|+..+.+
T Consensus        30 rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K   74 (108)
T PF02284_consen   30 RRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK   74 (108)
T ss_dssp             HHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            333333333444444444444444444444444444444444443

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=87.56  E-value=28  Score=33.62  Aligned_cols=63  Identities=14%  Similarity=0.206  Sum_probs=30.7

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      |....-+++..++..-.+.-+..+..+|...     .-+-..|-.++..|..+|.         +.-..+|+++.+.
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~-----~e~kmal~el~q~y~en~n---------~~l~~lWer~ve~  127 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEY-----GESKMALLELLQCYKENGN---------EQLYSLWERLVEY  127 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHh-----cchHHHHHHHHHHHHhcCc---------hhhHHHHHHHHHh
Confidence            3344444555555555555555555555543     1234445555555555532         4444555555544

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.28  E-value=15  Score=30.08  Aligned_cols=137  Identities=16%  Similarity=0.152  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 014860          254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN-SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK-SYNSL  331 (417)
Q Consensus       254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~l  331 (417)
                      ...|..-+. ..+.+..++|+.-|..+.+ .|...= +-.-.-+.......|+...|...|+++-.....|-.. -..-|
T Consensus        59 gd~flaAL~-lA~~~k~d~Alaaf~~lek-tg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          59 GDAFLAALK-LAQENKTDDALAAFTDLEK-TGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             hHHHHHHHH-HHHcCCchHHHHHHHHHHh-cCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence            345555554 4567888999999999987 343221 1122223344677899999999999998765444432 12222


Q ss_pred             HH--HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-C
Q 014860          332 VS--ALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-I  392 (417)
Q Consensus       332 i~--~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p  392 (417)
                      =.  .+...|.+++.....+-+...|-+.-...-.+|--+-.+.|++.+|.+.|..+.+... |
T Consensus       137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence            22  3457888888888777776666555555667777778899999999999999888655 5

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=87.09  E-value=28  Score=33.08  Aligned_cols=96  Identities=14%  Similarity=0.185  Sum_probs=75.8

Q ss_pred             ChhHHHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860           87 DDTQFRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA  165 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  165 (417)
                      |.-.++..+.+-|+.+ +|-.|++-|..++..++..++++.|.  ..++--..+|..-|.+=...++++.++.+|.+...
T Consensus        27 D~lrLRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~--~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~  104 (660)
T COG5107          27 DELRLRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLS--SPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLK  104 (660)
T ss_pred             hHHHHHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhc--CCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHh
Confidence            6667888888888775 89999999999999999999999995  33566677888888887788899999999998877


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhC
Q 014860          166 TPSFCGTEALYNTIIYFFAEAR  187 (417)
Q Consensus       166 ~~~~~~~~~~~~~li~~~~~~g  187 (417)
                      ..   .+...|...+..-.+.+
T Consensus       105 k~---l~ldLW~lYl~YIRr~n  123 (660)
T COG5107         105 KS---LNLDLWMLYLEYIRRVN  123 (660)
T ss_pred             hh---ccHhHHHHHHHHHHhhC
Confidence            54   45666766666544443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=86.93  E-value=14  Score=29.37  Aligned_cols=53  Identities=21%  Similarity=0.220  Sum_probs=37.7

Q ss_pred             hcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014860          266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG  320 (417)
Q Consensus       266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  320 (417)
                      ..++.++++.+++.|.-..--.+...++...+  +...|++++|..+|+++.+.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l--~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWL--LIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhHHHH--HHHcCCHHHHHHHHHhhhccC
Confidence            47888888888888865322234445555554  577888999999999888765

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.58  E-value=15  Score=30.83  Aligned_cols=75  Identities=13%  Similarity=0.087  Sum_probs=54.8

Q ss_pred             ccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860          149 AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK  226 (417)
Q Consensus       149 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~  226 (417)
                      +.|+ ++|.+.|-.+...+.. .++...-.|...|. ..+.+++.+++....+-.+.+-.+|...+..|.+.+.+.|+
T Consensus       119 r~~d-~~A~~~fL~~E~~~~l-~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~  193 (203)
T PF11207_consen  119 RFGD-QEALRRFLQLEGTPEL-ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN  193 (203)
T ss_pred             ccCc-HHHHHHHHHHcCCCCC-CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence            3444 6677888888777776 66666666666665 67788888888877765444446778888888888888888

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=86.02  E-value=8.8  Score=37.62  Aligned_cols=131  Identities=15%  Similarity=0.123  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH
Q 014860          175 LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI  254 (417)
Q Consensus       175 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~  254 (417)
                      .-+.+++.+.+.|-.++|+++            .+|..   .-.....+.|+        ++.|.++..+..      +.
T Consensus       616 ~rt~va~Fle~~g~~e~AL~~------------s~D~d---~rFelal~lgr--------l~iA~~la~e~~------s~  666 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKEQALEL------------STDPD---QRFELALKLGR--------LDIAFDLAVEAN------SE  666 (794)
T ss_pred             hhhhHHhHhhhccchHhhhhc------------CCChh---hhhhhhhhcCc--------HHHHHHHHHhhc------ch
Confidence            445566666666666666654            12221   12233456677        777776665532      55


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860          255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSA  334 (417)
Q Consensus       255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~  334 (417)
                      .-|..|-++..+.|++..|.+.|.....          |..|+-.+...|+-+....+-...++.|..      |.-.-+
T Consensus       667 ~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF~~  730 (794)
T KOG0276|consen  667 VKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAFLA  730 (794)
T ss_pred             HHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHHHH
Confidence            6688888888888888888888877765          566777777778777666666666666532      333345


Q ss_pred             HHhcCCHHHHHHHHHH
Q 014860          335 LALNGEVEETVKNLWE  350 (417)
Q Consensus       335 ~~~~g~~~~A~~~~~~  350 (417)
                      |...|+++++.+++.+
T Consensus       731 ~~l~g~~~~C~~lLi~  746 (794)
T KOG0276|consen  731 YFLSGDYEECLELLIS  746 (794)
T ss_pred             HHHcCCHHHHHHHHHh
Confidence            6677888887777654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.85  E-value=11  Score=31.71  Aligned_cols=72  Identities=17%  Similarity=-0.004  Sum_probs=33.1

Q ss_pred             HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860          271 NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK---GFVPSSKSYNSLVSALALNGEVEET  344 (417)
Q Consensus       271 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A  344 (417)
                      +.|.+.|-.+.. .+..-+....-.|...|. ..+.+++..++.+..+.   +-.+|...+.+|...|.+.|+.+.|
T Consensus       123 ~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            344555555544 233233333333333333 44555555555554432   2244555555555555555555544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=85.27  E-value=33  Score=32.21  Aligned_cols=157  Identities=8%  Similarity=-0.085  Sum_probs=97.8

Q ss_pred             HHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH--HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHH--------
Q 014860          110 VMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRK--LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTI--------  179 (417)
Q Consensus       110 ~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l--------  179 (417)
                      .+...++.+.|.++-....+..    ....+...++.  +--.++.+.+..-|++.++.++...+..+-...        
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld----~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k  253 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLD----ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKK  253 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhcc----cchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHH
Confidence            3456677777777766665433    22333344443  335677788888888887776432222222222        


Q ss_pred             --HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH-H
Q 014860          180 --IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF-S  256 (417)
Q Consensus       180 --i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~  256 (417)
                        ..-..+.|.+..|.+.|.+..........|+...|-.......+.|+        .++|+.--++..+.    |.. .
T Consensus       254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgr--------l~eaisdc~~Al~i----D~syi  321 (486)
T KOG0550|consen  254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGR--------LREAISDCNEALKI----DSSYI  321 (486)
T ss_pred             hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCC--------chhhhhhhhhhhhc----CHHHH
Confidence              23345778888888888888877655667777778888888888888        88888777666643    332 2


Q ss_pred             HHHHH--HHHHhcCCHHHHHHHHHHhhh
Q 014860          257 LNSMI--KGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       257 ~~~li--~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      ...+.  .++...++|++|.+-|+...+
T Consensus       322 kall~ra~c~l~le~~e~AV~d~~~a~q  349 (486)
T KOG0550|consen  322 KALLRRANCHLALEKWEEAVEDYEKAMQ  349 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            22222  334456778888888877655

>PF13934 ELYS: Nuclear pore complex assembly

Probab=84.63  E-value=7.8  Score=33.51  Aligned_cols=94  Identities=14%  Similarity=0.143  Sum_probs=61.5

Q ss_pred             CChhHHHHHHhcCCCCC----CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 014860           86 LDDTQFRCAVSELPPRF----NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVN  161 (417)
Q Consensus        86 ~~~~~~~~~l~~~p~~~----~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  161 (417)
                      +|...+++++..++++.    -...+++++...++++.|+.+++.+. -.  -.+......++.+ ..++.+.+|...-+
T Consensus        89 LD~~~~~~A~~~L~~ps~~~~~~~~Il~~L~~~~~~~lAL~y~~~~~-p~--l~s~~~~~~~~~~-La~~~v~EAf~~~R  164 (226)
T PF13934_consen   89 LDHGDFEEALELLSHPSLIPWFPDKILQALLRRGDPKLALRYLRAVG-PP--LSSPEALTLYFVA-LANGLVTEAFSFQR  164 (226)
T ss_pred             hChHhHHHHHHHhCCCCCCcccHHHHHHHHHHCCChhHHHHHHHhcC-CC--CCCHHHHHHHHHH-HHcCCHHHHHHHHH
Confidence            46677888888876662    24578888888899999999998873 22  2334444444555 56688888888776


Q ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860          162 QMLATPSFCGTEALYNTIIYFFAEAR  187 (417)
Q Consensus       162 ~m~~~~~~~~~~~~~~~li~~~~~~g  187 (417)
                      ...+..    ....+..++..+....
T Consensus       165 ~~~~~~----~~~l~e~l~~~~~~~~  186 (226)
T PF13934_consen  165 SYPDEL----RRRLFEQLLEHCLEEC  186 (226)
T ss_pred             hCchhh----hHHHHHHHHHHHHHHh
Confidence            654421    1346666666666443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=84.60  E-value=22  Score=29.53  Aligned_cols=202  Identities=15%  Similarity=0.035  Sum_probs=84.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD  253 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~  253 (417)
                      ..+......+...+.+..+...+......  .........+......+...++        ...+.+.+.........+ 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~-  128 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGK--------YEEALELLEKALALDPDP-  128 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHcCCCCc-
Confidence            34444444444455555554444444320  0012223334444444444444        444555554444332221 


Q ss_pred             HHHHHHHHH-HHHhcCCHHHHHHHHHHhhhhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860          254 IFSLNSMIK-GYILSNHVNDALRIFHQMGVVYNY--LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNS  330 (417)
Q Consensus       254 ~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~  330 (417)
                      ......... .+...|+++.|...+..... ..-  ......+......+...++.+.+...+.+............+..
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  207 (291)
T COG0457         129 DLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLN  207 (291)
T ss_pred             chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHH
Confidence            111111111 44455555555555554422 110  01222222233334445555555555555554311112444555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860          331 LVSALALNGEVEETVKNLWEMIEKQRPVD-FITYRTVLDEICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  389 (417)
                      +-..+...++.+.|...+......  .|+ ...+..+...+...|..+++...+.+....
T Consensus       208 ~~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (291)
T COG0457         208 LGLLYLKLGKYEEALEYYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL  265 (291)
T ss_pred             hhHHHHHcccHHHHHHHHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            555555555555555555555543  122 223333333333444555555555554443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=84.55  E-value=35  Score=31.86  Aligned_cols=283  Identities=12%  Similarity=0.046  Sum_probs=172.3

Q ss_pred             CCHHHHHHHH--hccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHH--HccCChhHHHHHHHHHHcCCCCCCCHHHHH
Q 014860          102 FNNEELCNVM--TLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKL--GAAKMYQEMDDVVNQMLATPSFCGTEALYN  177 (417)
Q Consensus       102 ~~~~~ll~~l--~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  177 (417)
                      ..|..|-.++  .-.|+-..|.++-....+.  +.-|.+-...++.+-  .-.|+++.|.+-|+.|...+.  .-..-..
T Consensus        83 rgyqALStGliAagAGda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPE--tRllGLR  158 (531)
T COG3898          83 RGYQALSTGLIAAGAGDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPE--TRLLGLR  158 (531)
T ss_pred             hHHHHHhhhhhhhccCchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChH--HHHHhHH
Confidence            3455555555  4567888887777665322  355666666666543  467999999999999988643  1122223


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC-CCCCHHH
Q 014860          178 TIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG-IEPDIFS  256 (417)
Q Consensus       178 ~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~  256 (417)
                      .|.-.--+.|+.+.|.+.-+..-..    -+.-.-.+...+...+..|+        ++.|+++.+.-++.. +.++..-
T Consensus       159 gLyleAqr~GareaAr~yAe~Aa~~----Ap~l~WA~~AtLe~r~~~gd--------Wd~AlkLvd~~~~~~vie~~~ae  226 (531)
T COG3898         159 GLYLEAQRLGAREAARHYAERAAEK----APQLPWAARATLEARCAAGD--------WDGALKLVDAQRAAKVIEKDVAE  226 (531)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHhh----ccCCchHHHHHHHHHHhcCC--------hHHHHHHHHHHHHHHhhchhhHH
Confidence            3333344678899999888887764    12335678999999999999        999999999877643 3444432


Q ss_pred             --HHHHHHHHHh---cCCHHHHHHHHHHhhhhCCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860          257 --LNSMIKGYIL---SNHVNDALRIFHQMGVVYNYLPNSFSYD-YLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNS  330 (417)
Q Consensus       257 --~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~  330 (417)
                        -..|+.+-..   ..+...|...-.+..   .+.||..--. .-..++.+.|+..++-.+++.+.+....|+.  +. 
T Consensus       227 R~rAvLLtAkA~s~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i--a~-  300 (531)
T COG3898         227 RSRAVLLTAKAMSLLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI--AL-  300 (531)
T ss_pred             HHHHHHHHHHHHHHhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH--HH-
Confidence              2233333221   234555555544443   3445544332 3456789999999999999999987555543  32 


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhc
Q 014860          331 LVSALALNGEVEETVKNLWEMIEK-QRPVD-FITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDF  408 (417)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~  408 (417)
                       +..+.+.|+.  +..-++..... .++|| ...--.+..+-...|++..|..--+...... |....|..|-+.-.-+-
T Consensus       301 -lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~-pres~~lLlAdIeeAet  376 (531)
T COG3898         301 -LYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA-PRESAYLLLADIEEAET  376 (531)
T ss_pred             -HHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC-chhhHHHHHHHHHhhcc
Confidence             2233455543  33333333332 34454 4566677778888888877766544443322 44445555544443333


Q ss_pred             Cc
Q 014860          409 GN  410 (417)
Q Consensus       409 ~~  410 (417)
                      |+
T Consensus       377 GD  378 (531)
T COG3898         377 GD  378 (531)
T ss_pred             Cc
Confidence            43

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=84.21  E-value=23  Score=29.42  Aligned_cols=226  Identities=13%  Similarity=0.026  Sum_probs=158.1

Q ss_pred             cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 014860          114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAV  193 (417)
Q Consensus       114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  193 (417)
                      .+....+...+...............+......+...+.+..+...+...............+......+...+.++.+.
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  115 (291)
T COG0457          36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL  115 (291)
T ss_pred             HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence            34555666666666433311124677788888888999999999888888763111156677788888888899999999


Q ss_pred             HHHHHhHhCCCCCCCCCHHHHHHHHH-HHHhcCCccchhhhhHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCH
Q 014860          194 YVFKYMKNSRNLECRPSIRSYNILFT-AFLSRGKNTYINHVYMETIRCLFKQMVNDGI--EPDIFSLNSMIKGYILSNHV  270 (417)
Q Consensus       194 ~~~~~m~~~~~~g~~p~~~~~~~li~-~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~--~p~~~~~~~li~~~~~~g~~  270 (417)
                      ..+.......   ..+ ......... .+...|+        .+.+...+.+......  ......+......+...++.
T Consensus       116 ~~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (291)
T COG0457         116 ELLEKALALD---PDP-DLAEALLALGALYELGD--------YEEALELYEKALELDPELNELAEALLALGALLEALGRY  183 (291)
T ss_pred             HHHHHHHcCC---CCc-chHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCH
Confidence            9999998751   122 222333333 7888999        9999999999865321  12334444455557788999


Q ss_pred             HHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860          271 NDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLW  349 (417)
Q Consensus       271 ~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~  349 (417)
                      +.+...+......  ... ....+..+-..+...++++.|...+......... ....+..+...+...+..+++...+.
T Consensus       184 ~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (291)
T COG0457         184 EEALELLEKALKL--NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALE  260 (291)
T ss_pred             HHHHHHHHHHHhh--CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHH
Confidence            9999999988762  223 4677888888899999999999999998875322 24455555555557778999999988


Q ss_pred             HHHHc
Q 014860          350 EMIEK  354 (417)
Q Consensus       350 ~m~~~  354 (417)
                      +....
T Consensus       261 ~~~~~  265 (291)
T COG0457         261 KALEL  265 (291)
T ss_pred             HHHHh
Confidence            88875

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.13  E-value=3.2  Score=24.24  Aligned_cols=26  Identities=31%  Similarity=0.401  Sum_probs=12.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860          327 SYNSLVSALALNGEVEETVKNLWEMI  352 (417)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~m~  352 (417)
                      +++.|...|...|++++|..++++..
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            44455555555555555555555443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=84.11  E-value=35  Score=31.51  Aligned_cols=168  Identities=11%  Similarity=0.036  Sum_probs=105.0

Q ss_pred             HHHHHHhccCChhHHHHHHHHhhcCCCCCC---CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC----CCHHHHHH
Q 014860          106 ELCNVMTLQEDPLVCLELFNWASKQPRFRH---DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC----GTEALYNT  178 (417)
Q Consensus       106 ~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~----~~~~~~~~  178 (417)
                      .+.+++.+-.++.+++.+-.|-...+|..|   -....-.+-.++...+.++++.+-|+...+.....    ....++-.
T Consensus        88 nlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~  167 (518)
T KOG1941|consen   88 NLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVS  167 (518)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhh
Confidence            344444555567778888777766666544   22344456677788889999999988887743321    23467889


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCC-CCCCCCCHHHHH-----HHHHHHHhcCCccchhhhhHHHHHHHHHHHHH----C
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSR-NLECRPSIRSYN-----ILFTAFLSRGKNTYINHVYMETIRCLFKQMVN----D  248 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~-~~g~~p~~~~~~-----~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~----~  248 (417)
                      |-..|.+..|+++|.-+.....+-- ..++..=..-|.     .|--++...|.        +..|.+.-++..+    .
T Consensus       168 Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~--------LgdA~e~C~Ea~klal~~  239 (518)
T KOG1941|consen  168 LGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGR--------LGDAMECCEEAMKLALQH  239 (518)
T ss_pred             HHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcc--------cccHHHHHHHHHHHHHHh
Confidence            9999999999999887666544320 012211112233     34445666777        5556665555443    3


Q ss_pred             CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 014860          249 GIEP-DIFSLNSMIKGYILSNHVNDALRIFHQMG  281 (417)
Q Consensus       249 g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~  281 (417)
                      |-.+ -....-.+-+.|...|+.+.|..-|++..
T Consensus       240 Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  240 GDRALQARCLLCFADIYRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             CChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence            3222 23344567788889999999888877653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=83.82  E-value=2.9  Score=24.42  Aligned_cols=30  Identities=7%  Similarity=0.104  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860          173 EALYNTIIYFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      ..+++.|...|...|++++|..++++....
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            356788888888889988888888887653

>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]

Probab=83.66  E-value=32  Score=30.68  Aligned_cols=134  Identities=16%  Similarity=0.092  Sum_probs=76.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCCHH
Q 014860          251 EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR----KGFVPSSK  326 (417)
Q Consensus       251 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~  326 (417)
                      +-|..-+|.|+.-  +..++++--+-+++.++..|-.-....+-.+..-||+.++.+.+.++..+..+    .|.+.|+.
T Consensus        78 kfD~~~~n~l~kk--neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~  155 (412)
T COG5187          78 KFDRGRMNTLLKK--NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVF  155 (412)
T ss_pred             ehhhHHHHHHHHh--hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhH
Confidence            4455555555431  11122232233344444333444566778888889999999988887766553    46666653


Q ss_pred             HHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          327 SYNS-LVSALALNGEVEETVKNLWEMIEKQRPVDFI----TYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       327 ~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      ...+ |--.|....-+++-++..+.|.++|...+..    +|..+.  +....++.+|-.++-+...
T Consensus       156 l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~--~m~~RnFkeAa~Ll~d~l~  220 (412)
T COG5187         156 LCKIRLGLIYGDRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIF--KMMRRNFKEAAILLSDILP  220 (412)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHH--HHHHHhhHHHHHHHHHHhc
Confidence            3222 2233444445678888888888887655443    333322  2234567777777666543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=83.12  E-value=2  Score=24.33  Aligned_cols=23  Identities=13%  Similarity=0.358  Sum_probs=15.7

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHH
Q 014860          171 GTEALYNTIIYFFAEARKLSRAV  193 (417)
Q Consensus       171 ~~~~~~~~li~~~~~~g~~~~a~  193 (417)
                      .+...|+.+...|...|++++|+
T Consensus        11 ~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen   11 NNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             CCHHHHHHHHHHHHHCcCHHhhc
Confidence            45667777777777777776664

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.64  E-value=4.3  Score=22.58  Aligned_cols=29  Identities=7%  Similarity=0.059  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      .+|..+..+|...|++++|+..|++..+.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            46778888888888888888888888764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=82.52  E-value=0.3  Score=38.74  Aligned_cols=126  Identities=14%  Similarity=0.093  Sum_probs=67.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860          260 MIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNG  339 (417)
Q Consensus       260 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g  339 (417)
                      +|..+.+.+......++++.+.. .+...+....+.++..|++.++.++.+++++...  +     .-...++..|.+.|
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~-~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~--~-----yd~~~~~~~c~~~~   84 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVK-ENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN--N-----YDLDKALRLCEKHG   84 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHH-TSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS--S-----S-CTHHHHHHHTTT
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHh-cccccCHHHHHHHHHHHHhcCCchHHHHHccccc--c-----cCHHHHHHHHHhcc
Confidence            55666666777777777777765 3444667777777777777776676766666111  1     22244556666666


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          340 EVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       340 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                      .+++|..++.++....         ..+..+...+++++|.+++.+     ..+...|..+++.|.+.
T Consensus        85 l~~~a~~Ly~~~~~~~---------~al~i~~~~~~~~~a~e~~~~-----~~~~~l~~~l~~~~l~~  138 (143)
T PF00637_consen   85 LYEEAVYLYSKLGNHD---------EALEILHKLKDYEEAIEYAKK-----VDDPELWEQLLKYCLDS  138 (143)
T ss_dssp             SHHHHHHHHHCCTTHT---------TCSSTSSSTHCSCCCTTTGGG-----CSSSHHHHHHHHHHCTS
T ss_pred             hHHHHHHHHHHcccHH---------HHHHHHHHHccHHHHHHHHHh-----cCcHHHHHHHHHHHHhc
Confidence            6666655554433221         011112223334444322111     13567888888877654

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=82.19  E-value=19  Score=31.81  Aligned_cols=88  Identities=13%  Similarity=0.025  Sum_probs=62.7

Q ss_pred             HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 014860          107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA  186 (417)
Q Consensus       107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  186 (417)
                      -|++++..++|.+++...-.--+.+ -+.-+.....-|-.|.+.+.+..+.++-....+.+.. .+...|.+++..|...
T Consensus        89 GIQALAEmnrWreVLsWvlqyYq~p-EklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~N-q~lp~y~~vaELyLl~  166 (309)
T PF07163_consen   89 GIQALAEMNRWREVLSWVLQYYQVP-EKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSN-QSLPEYGTVAELYLLH  166 (309)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcCc-ccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCccc-CCchhhHHHHHHHHHH
Confidence            4788888888888776433221211 2345566666677788999999999999888887654 4455588887777654


Q ss_pred             -----CCHHHHHHHH
Q 014860          187 -----RKLSRAVYVF  196 (417)
Q Consensus       187 -----g~~~~a~~~~  196 (417)
                           |.+++|+++.
T Consensus       167 VLlPLG~~~eAeelv  181 (309)
T PF07163_consen  167 VLLPLGHFSEAEELV  181 (309)
T ss_pred             HHhccccHHHHHHHH
Confidence                 8899998877

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=81.89  E-value=63  Score=32.81  Aligned_cols=110  Identities=11%  Similarity=0.038  Sum_probs=54.3

Q ss_pred             ChhHHHHHHhcCC-----CCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 014860           87 DDTQFRCAVSELP-----PRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVN  161 (417)
Q Consensus        87 ~~~~~~~~l~~~p-----~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  161 (417)
                      ....++..+....     ....+-....++.-.|+++.|++++..   ..+...|...+.+.+..++-.+-.+...   .
T Consensus       239 ~L~~LQ~~i~~~Ge~~F~~~~~p~~Yf~~LlLtgqFE~AI~~L~~---~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~  312 (613)
T PF04097_consen  239 TLEDLQKLILKYGESHFNAGSNPLLYFQVLLLTGQFEAAIEFLYR---NEFNRVDAVHFAIALAYYGLLRVSDSSS---A  312 (613)
T ss_dssp             -HHHHHHHHHHH-GGGCTT------HHHHHHHTT-HHHHHHHHHT-----T-HHHHHHHHHHHHHTT-------------
T ss_pred             cHHHHHHHHHHhchhhcccchhHHHHHHHHHHHhhHHHHHHHHHh---hccCcccHHHHHHHHHHcCCCCCCCccc---c
Confidence            4455555554331     222334567788889999999999865   2334567777777666655333222222   3


Q ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHh---CCHHHHHHHHHHhHhC
Q 014860          162 QMLATPSFCGTEALYNTIIYFFAEA---RKLSRAVYVFKYMKNS  202 (417)
Q Consensus       162 ~m~~~~~~~~~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~  202 (417)
                      .+.......+...-+..||..|++.   .+..+|.+.|--+...
T Consensus       313 ~lls~~~~~~~~ln~arLI~~Y~~~F~~td~~~Al~Y~~li~~~  356 (613)
T PF04097_consen  313 PLLSVDPGDPPPLNFARLIGQYTRSFEITDPREALQYLYLICLF  356 (613)
T ss_dssp             --------------HHHHHHHHHHTTTTT-HHHHHHHHHGGGGS
T ss_pred             ceeeecCCCCCCcCHHHHHHHHHHHHhccCHHHHHHHHHHHHHc
Confidence            3332221112225688899999875   6788899999888875

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=81.14  E-value=16  Score=28.28  Aligned_cols=65  Identities=9%  Similarity=0.211  Sum_probs=49.5

Q ss_pred             CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 014860          131 PRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKY  198 (417)
Q Consensus       131 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  198 (417)
                      ...+-|..-....+...-   ..+.+.++|..|...+........|......+...|++++|.++|+.
T Consensus        60 ~~Y~nD~RylkiWi~ya~---~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~  124 (126)
T PF08311_consen   60 ERYKNDERYLKIWIKYAD---LSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL  124 (126)
T ss_dssp             GGGTT-HHHHHHHHHHHT---TBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HhhcCCHHHHHHHHHHHH---HccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence            344566666666555433   23389999999999888767889999999999999999999999975

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=81.09  E-value=19  Score=26.39  Aligned_cols=51  Identities=16%  Similarity=0.169  Sum_probs=23.3

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          298 HGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       298 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      ..+...|++++|..+.+.+    .-||...|-+|-.  .+.|..+++..-+.+|...
T Consensus        47 sSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl~rla~s   97 (115)
T TIGR02508        47 SSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRLNRLAAS   97 (115)
T ss_pred             HHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHHHHHHhC
Confidence            3444555555555544433    2445555444422  2444444444444444444

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.84  E-value=13  Score=31.70  Aligned_cols=78  Identities=8%  Similarity=0.003  Sum_probs=42.8

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHH
Q 014860          141 HIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTA  220 (417)
Q Consensus       141 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~  220 (417)
                      +..++.+.+.+.+++|+....+-++..+  .|...-..++..||-.|++++|..-++-.-.-. ....+....|..+|.+
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkakP--tda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~-p~~t~~a~lyr~lir~   81 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAKP--TDAGGRHFLFQLLCVAGDWEKALAQLNLAATLS-PQDTVGASLYRHLIRC   81 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCC--ccccchhHHHHHHhhcchHHHHHHHHHHHhhcC-cccchHHHHHHHHHHH
Confidence            3445566666666776666665555443  455556666677777777777766555444320 0122334445555544


Q ss_pred             H
Q 014860          221 F  221 (417)
Q Consensus       221 ~  221 (417)
                      -
T Consensus        82 e   82 (273)
T COG4455          82 E   82 (273)
T ss_pred             H
Confidence            3

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=80.66  E-value=37  Score=29.39  Aligned_cols=74  Identities=16%  Similarity=0.099  Sum_probs=37.9

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-C-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860          284 YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK-G-----------FVPSSKSYNSLVSALALNGEVEETVKNLWEM  351 (417)
Q Consensus       284 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g-----------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  351 (417)
                      .++.-+.....+++  +...|+...|+.-+..-... |           -.|.......++..|.+ +++++|.+++.++
T Consensus       188 Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~~~~~A~~il~~l  264 (333)
T KOG0991|consen  188 EKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-RNIDEALKILAEL  264 (333)
T ss_pred             hCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-ccHHHHHHHHHHH
Confidence            34444444444443  34556666665555543321 1           12455555555555443 5566666666666


Q ss_pred             HHcCCCCCH
Q 014860          352 IEKQRPVDF  360 (417)
Q Consensus       352 ~~~g~~p~~  360 (417)
                      -+.|..|..
T Consensus       265 w~lgysp~D  273 (333)
T KOG0991|consen  265 WKLGYSPED  273 (333)
T ss_pred             HHcCCCHHH
Confidence            666665543

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.61  E-value=15  Score=31.33  Aligned_cols=77  Identities=16%  Similarity=0.175  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHH
Q 014860          256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK--GFVPSSKSYNSLVS  333 (417)
Q Consensus       256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~~~~~li~  333 (417)
                      |.+..++.+.+.+.+.+|....++-.+.  -+.|..+-..++..||-.|+|++|..-++-.-..  ...+-..+|..+|.
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir   80 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR   80 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence            5566788888999999999988776552  2346667788999999999999998777665543  23345667777776


Q ss_pred             H
Q 014860          334 A  334 (417)
Q Consensus       334 ~  334 (417)
                      +
T Consensus        81 ~   81 (273)
T COG4455          81 C   81 (273)
T ss_pred             H
Confidence            5

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=80.58  E-value=5.5  Score=21.94  Aligned_cols=29  Identities=7%  Similarity=0.020  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      ..+..+...|.+.|++++|++.|++..+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            35667778888888888888888887764

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	417
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	1e-11
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-11
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 66.0 bits (159), Expect = 1e-11
 Identities = 22/147 (14%), Positives = 47/147 (31%), Gaps = 3/147 (2%)

Query: 244 QMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMG--VVYNYLPNSFSYDYLIHGLC 301
           Q     +      L +  K  +L++ +  A  +            L     Y+ ++ G  
Sbjct: 117 QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWA 176

Query: 302 AQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLW-EMIEKQRPVDF 360
            QG  K    +   +K  G  P   SY + +  +    +   T++    +M ++   +  
Sbjct: 177 RQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQA 236

Query: 361 ITYRTVLDEICRRGRAGEAMKLLKELQ 387
           +    +L E  R        K+     
Sbjct: 237 LFTAVLLSEEDRATVLKAVHKVKPTFS 263

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 63.7 bits (153), Expect = 6e-11
 Identities = 18/212 (8%), Positives = 57/212 (26%), Gaps = 8/212 (3%)

Query: 146 KLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNL 205
           +    K+  +++   +   +     G +              +L  A ++       R  
Sbjct: 100 QEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQK 159

Query: 206 ECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYI 265
               ++  YN +   +  +G          + +  +   + + G+ PD+ S  + ++   
Sbjct: 160 RKLLTLDMYNAVMLGWARQGA--------FKELVYVLFMVKDAGLTPDLLSYAAALQCMG 211

Query: 266 LSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS 325
             +     +    +          +     L+         K   ++         +P  
Sbjct: 212 RQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPP 271

Query: 326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRP 357
            + + L+  +          K    +   Q  
Sbjct: 272 VNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCL 303

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.8 bits (105), Expect = 4e-05
 Identities = 47/289 (16%), Positives = 87/289 (30%), Gaps = 75/289 (25%)

Query: 153 YQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVY-VFKYMKNS-RNLECR-- 208
           +  MD    +          +  Y  I+  F +A   +     V    K+     E    
Sbjct: 4   HHHMDFETGEH---------QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHI 54

Query: 209 -----PSIRSYNILFTAFLSRGKNTYINHVYMETI-----RCLFKQMVNDGIEPDIFSLN 258
                    +   LF   LS+ +       ++E +     + L   +  +  +P   S+ 
Sbjct: 55  IMSKDAVSGTL-RLFWTLLSKQEEMV--QKFVEEVLRINYKFLMSPIKTEQRQP---SMM 108

Query: 259 SMIKGYILSNHVNDALRIFHQMGV------------VYNYLPNSFSYDYLIHGLCAQGRT 306
           + +         ND  ++F +  V            +    P       LI G+   G+T
Sbjct: 109 TRMYIEQRDRLYNDN-QVFAKYNVSRLQPYLKLRQALLELRPAKN---VLIDGVLGSGKT 164

Query: 307 KNARELCDEMKRKGFVP------SSKSYNSLVSALALNGEVEETVKNLWEMIEK---QRP 357
             A ++C   K +  +       + K+ NS  + L       E ++ L   I+     R 
Sbjct: 165 WVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVL-------EMLQKLLYQIDPNWTSRS 217

Query: 358 VDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED 406
                 +  +  I    R     +LLK            Y   L VL +
Sbjct: 218 DHSSNIKLRIHSIQAELR-----RLLKSKP---------YENCLLVLLN 252

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 2e-04
 Identities = 55/400 (13%), Positives = 119/400 (29%), Gaps = 132/400 (33%)

Query: 73  GVGKRSKADSKPALDDTQFRCAVSELPPRFNNE----------------ELCNVMTLQED 116
           G GK   A         + +C       + + +                E+   +  Q D
Sbjct: 160 GSGKTWVALD--VCLSYKVQC-------KMDFKIFWLNLKNCNSPETVLEMLQKLLYQID 210

Query: 117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQE----MDDVVN----------- 161
           P       +  S   + R  +    +  R+L  +K Y+     + +V N           
Sbjct: 211 PNWTSRSDH--SSNIKLRIHSIQAEL--RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC 266

Query: 162 QMLATPSFCG-TEALYNTIIYF---------FAEARKLSRAVYVF-KYMKNSRNLECRPS 210
           ++L T  F   T+ L                       S    +  KY+ + R  +    
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS----LLLKYL-DCRPQDLPRE 321

Query: 211 IRSYNIL----FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL 266
           + + N          +  G  T+ N          +K +  D        L ++I+  + 
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDN----------WKHVNCD-------KLTTIIESSLN 364

Query: 267 SNHVNDALRIFHQMGVVYNYLPNSFSYDYLI--HGLC---AQGRTKNARELCDEMKRKGF 321
                +  ++F ++ V        F     I    L          +   + +++ +   
Sbjct: 365 VLEPAEYRKMFDRLSV--------FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL 416

Query: 322 VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMK 381
           V   +   S +S  ++  E++  ++N + +           +R+++D             
Sbjct: 417 V-EKQPKESTISIPSIYLELKVKLENEYAL-----------HRSIVD----------HYN 454

Query: 382 LLKELQNKNL----IDGYTYTKLLDVLEDDFGNSIRHHLR 417
           + K   + +L    +D Y Y            + I HHL+
Sbjct: 455 IPKTFDSDDLIPPYLDQYFY------------SHIGHHLK 482

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	417
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.95
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.94
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.88
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.88
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.86
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.84
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.84
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.83
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.82
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.78
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.77
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.77
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.77
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.76
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.76
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.74
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.73
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.72
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.72
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.7
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.68
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.68
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.68
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.67
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.65
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.63
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.6
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.59
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.59
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.59
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.58
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.57
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.57
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.56
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.56
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.56
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.56
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.54
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.53
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.53
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.48
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.48
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.47
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.44
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.43
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.42
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.4
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.4
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.39
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.39
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.38
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.36
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.35
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.34
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.33
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.33
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.32
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.32
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.31
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.28
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.27
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.26
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.25
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.24
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.22
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.21
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.2
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.19
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.18
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.14
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.14
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.13
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.12
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.09
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.07
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.05
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.03
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.01
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.99
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.98
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.98
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	98.97
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.94
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.91
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.91
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	98.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.86
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.84
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.78
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.77
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.76
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.75
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.73
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.72
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.72
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.71
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.71
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.71
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.71
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.7
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.7
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.69
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.68
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.65
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.63
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.62
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.6
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.58
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.58
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.57
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.56
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	98.55
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.53
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.53
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.53
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.51
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.5
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.49
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.47
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.46
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.46
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.46
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.44
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.41
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.41
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.4
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.38
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.37
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.36
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.35
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.33
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.31
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.3
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.29
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.28
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.27
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.24
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.24
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.24
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.23
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.22
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.21
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.2
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.19
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.17
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.17
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.16
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.16
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.14
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.13
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.12
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.09
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.08
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.07
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.07
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.07
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.06
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.05
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.03
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.02
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.02
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.01
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.01
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.0
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	97.98
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.97
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.96
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	97.94
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	97.92
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.9
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	97.88
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	97.86
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	97.84
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.78
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.73
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.73
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.71
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.71
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.68
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	97.64
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.62
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.61
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.59
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.53
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.52
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.45
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.42
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.36
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.34
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.32
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.3
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.28
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.26
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.24
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.19
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.17
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.14
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.12
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.1
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.08
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	96.97
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.95
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.91
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.77
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.6
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.55
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.51
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	96.5
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.43
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.38
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.29
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.02
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.86
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	95.83
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.73
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.69
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.6
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.48
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.38
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.2
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.17
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.83
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.76
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	93.81
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.62
1pc2_A	152	Mitochondria fission protein; unknown function; NM	92.43
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	91.89
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.86
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	91.29
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	91.16
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	90.29
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	89.96
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.6
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	89.2
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	88.29
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	88.16
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.46
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	86.62
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	86.36
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	85.95
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	85.06
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	84.91
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	84.6
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	83.83
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	83.1
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	80.06

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=3.9e-35  Score=283.04  Aligned_cols=216  Identities=16%  Similarity=0.198  Sum_probs=186.1

Q ss_pred             hHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccc-hhh
Q 014860          154 QEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTY-INH  232 (417)
Q Consensus       154 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~-~~~  232 (417)
                      ..++.+...+.+.+.......+++.+|.+|++.|++++|+++|++|.+.   |++||..+||+||.+|++.+.... ...
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~---Gv~pd~~tyn~Li~~c~~~~~~~~~~~~   83 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRN---GVQLSQYHYNVLLYVCSLAEAATESSPN   83 (501)
T ss_dssp             -----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH---TCCCCHHHHHHHHHHHTTCCCCSSSSCC
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---CCCCCHhHHHHHHHHHHhCCchhhhhhc
Confidence            4456667777776665334567899999999999999999999999998   999999999999999998775222 122


Q ss_pred             hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014860          233 VYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNAREL  312 (417)
Q Consensus       233 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l  312 (417)
                      ..+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+ .|+.||..||++||.+|++.|++++|.++
T Consensus        84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l  162 (501)
T 4g26_A           84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEV  162 (501)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence            33799999999999999999999999999999999999999999999998 89999999999999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860          313 CDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR  373 (417)
Q Consensus       313 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  373 (417)
                      |++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus       163 ~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          163 DAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             HHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999999999764

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=2.8e-34  Score=277.07  Aligned_cols=206  Identities=16%  Similarity=0.203  Sum_probs=181.7

Q ss_pred             HHHHHHHHHhHhCCCCCCCCCH-HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860          190 SRAVYVFKYMKNSRNLECRPSI-RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN  268 (417)
Q Consensus       190 ~~a~~~~~~m~~~~~~g~~p~~-~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  268 (417)
                      ..+..+.++++++   +..+.. ..++.+|.+|++.|+        +++|+++|++|.+.|+.||..|||+||.+|++.+
T Consensus         7 s~~e~L~~~~~~k---~~~~spe~~l~~~id~c~k~G~--------~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~   75 (501)
T 4g26_A            7 SPSENLSRKAKKK---AIQQSPEALLKQKLDMCSKKGD--------VLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAE   75 (501)
T ss_dssp             --------------------CHHHHHHHHHHHTTTSCC--------HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCC
T ss_pred             chHHHHHHHHHHh---cccCCCHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCC
Confidence            3455666777665   555443 458999999999999        9999999999999999999999999999999876


Q ss_pred             C---------HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 014860          269 H---------VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNG  339 (417)
Q Consensus       269 ~---------~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g  339 (417)
                      .         +++|.++|++|.. .|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..|||+||.+|++.|
T Consensus        76 ~~~~~~~~~~l~~A~~lf~~M~~-~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g  154 (501)
T 4g26_A           76 AATESSPNPGLSRGFDIFKQMIV-DKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG  154 (501)
T ss_dssp             CCSSSSCCHHHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTT
T ss_pred             chhhhhhcchHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCC
Confidence            5         6889999999999 89999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHhh
Q 014860          340 EVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLEDD  407 (417)
Q Consensus       340 ~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~~  407 (417)
                      ++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|. |+..||+.++..++..
T Consensus       155 ~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          155 DADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             CHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             CHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            9999999999999999999999999999999999999999999999999999 8999999999998764

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.95  E-value=4.2e-25  Score=219.38  Aligned_cols=286  Identities=8%  Similarity=-0.042  Sum_probs=239.0

Q ss_pred             CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH
Q 014860           99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT  178 (417)
Q Consensus        99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~  178 (417)
                      ++..++..++..+.+.|++++|+++|+.+.+..  +.+..++..++.++.+.|++++|.++++.+.+...  .+..+++.
T Consensus       303 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~  378 (597)
T 2xpi_A          303 KSSDLLLCKADTLFVRSRFIDVLAITTKILEID--PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP--EKAVTWLA  378 (597)
T ss_dssp             GCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc--ccHHHHHH
Confidence            344577888888999999999999999886543  44778888899999999999999999999886543  67888999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN  258 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  258 (417)
                      ++.+|.+.|++++|.++|+++.+.    .+.+..+|+.++.+|.+.|+        +++|+++|+++.+.+ +.+..+|+
T Consensus       379 l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~-~~~~~~~~  445 (597)
T 2xpi_A          379 VGIYYLCVNKISEARRYFSKSSTM----DPQFGPAWIGFAHSFAIEGE--------HDQAISAYTTAARLF-QGTHLPYL  445 (597)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHTT-TTCSHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-ccchHHHH
Confidence            999999999999999999998874    13467889999999999999        999999999998775 45788899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHH
Q 014860          259 SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVPS--SKSYNSLV  332 (417)
Q Consensus       259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~--~~~~~~li  332 (417)
                      .+..+|.+.|++++|.++|+++.+.  .+.+..+|+.++..|.+.|++++|.++|+++.+.    +..|+  ..+|..+.
T Consensus       446 ~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~  523 (597)
T 2xpi_A          446 FLGMQHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLG  523 (597)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHH
Confidence            9999999999999999999998763  2347888999999999999999999999998875    66777  78899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHH
Q 014860          333 SALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVL  404 (417)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~  404 (417)
                      .+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.+...-+...+..+-..|
T Consensus       524 ~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~  594 (597)
T 2xpi_A          524 HAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRAL  594 (597)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTT
T ss_pred             HHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence            99999999999999999988764 447888999999999999999999999999887654666666665544

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.94  E-value=4.8e-25  Score=218.97  Aligned_cols=281  Identities=9%  Similarity=0.013  Sum_probs=252.2

Q ss_pred             HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC
Q 014860          108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR  187 (417)
Q Consensus       108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g  187 (417)
                      +..|.+.|++++|+++|+.+.+.   +++..++..++.++.+.|++++|.++|+.+.+.+.  .+..+++.++.+|.+.|
T Consensus       279 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g  353 (597)
T 2xpi_A          279 LNKTSHEDELRRAEDYLSSINGL---EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP--YNLDVYPLHLASLHESG  353 (597)
T ss_dssp             SCTTTTHHHHHHHHHHHHTSTTG---GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCCTTHHHHHHHHHHHT
T ss_pred             HHHHcCcchHHHHHHHHHHhhcC---CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc--ccHHHHHHHHHHHHHhC
Confidence            44556788999999999988643   58999999999999999999999999999998764  57788999999999999


Q ss_pred             CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860          188 KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS  267 (417)
Q Consensus       188 ~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  267 (417)
                      ++++|.++|+++.+.    .+.+..+|+.++..|.+.|+        +++|.++|+++.+.. +.+..+|+.++.+|.+.
T Consensus       354 ~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~  420 (597)
T 2xpi_A          354 EKNKLYLISNDLVDR----HPEKAVTWLAVGIYYLCVNK--------ISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIE  420 (597)
T ss_dssp             CHHHHHHHHHHHHHH----CTTSHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhh----CcccHHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            999999999999874    35678999999999999999        999999999998754 44688999999999999


Q ss_pred             CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 014860          268 NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKN  347 (417)
Q Consensus       268 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~  347 (417)
                      |++++|.++|+++.+.  .+.+..+|+.++.+|.+.|++++|.++|++|.+.. +.+..+|+.++.+|.+.|++++|.++
T Consensus       421 g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~  497 (597)
T 2xpi_A          421 GEHDQAISAYTTAARL--FQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINH  497 (597)
T ss_dssp             TCHHHHHHHHHHHHHT--TTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence            9999999999999862  24578999999999999999999999999999764 33789999999999999999999999


Q ss_pred             HHHHHHc----CCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhcC
Q 014860          348 LWEMIEK----QRPVD--FITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFG  409 (417)
Q Consensus       348 ~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~~  409 (417)
                      |+++.+.    +..|+  ..+|..+..+|.+.|++++|.++|+++.+.+..+..+|..+..+|.+.+.
T Consensus       498 ~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~  565 (597)
T 2xpi_A          498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKI  565 (597)
T ss_dssp             HHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence            9999887    67888  78999999999999999999999999999876688999999999987743

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.88  E-value=2.1e-19  Score=168.70  Aligned_cols=296  Identities=13%  Similarity=0.037  Sum_probs=215.2

Q ss_pred             HHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860           91 FRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF  169 (417)
Q Consensus        91 ~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  169 (417)
                      +...+...|.. ..|..+..++...|++++|++.|+.+.+..  +.+..+|..+..++...|++++|.+.++.+.+..+ 
T Consensus        56 ~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-  132 (388)
T 1w3b_A           56 STLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK--PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-  132 (388)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-
T ss_pred             HHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence            44555555544 367778888888999999999998886543  45677888888888899999999999888887653 


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860          170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG  249 (417)
Q Consensus       170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g  249 (417)
                       .+...+..+...+...|++++|.+.|+++.+.    .+.+..+|..+...+...|+        +++|.+.|+++.+.+
T Consensus       133 -~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~  199 (388)
T 1w3b_A          133 -DLYCVRSDLGNLLKALGRLEEAKACYLKAIET----QPNFAVAWSNLGCVFNAQGE--------IWLAIHHFEKAVTLD  199 (388)
T ss_dssp             -TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHC
T ss_pred             -CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC
Confidence             45667778888888888899998888888875    13357788888888888888        888888888887754


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          250 IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYN  329 (417)
Q Consensus       250 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~  329 (417)
                       +-+...|..+...+...|++++|...+++.....  +.+..++..+...|...|++++|.+.|+++.+.+. .+..+|.
T Consensus       200 -p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~  275 (388)
T 1w3b_A          200 -PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYC  275 (388)
T ss_dssp             -TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHH
T ss_pred             -CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHH
Confidence             3345667777777777777777777777665421  23466777777777777777777777777776532 2456677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          330 SLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       330 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                      .+..+|.+.|++++|.+.|+++.+. .+.+..++..+...+.+.|++++|...++++.+....+..++..+..++.+.
T Consensus       276 ~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  352 (388)
T 1w3b_A          276 NLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             HHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            7777777777777777777777765 3456667777777777777777777777777765433566666666666655

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.88  E-value=3.9e-19  Score=166.83  Aligned_cols=299  Identities=13%  Similarity=0.089  Sum_probs=255.4

Q ss_pred             ChhHHHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860           87 DDTQFRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA  165 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  165 (417)
                      ....+.+.+...|+.. .+..+..++...|++++|++.|+.+.+..  +.+...+..+...+...|++++|.+.++.+.+
T Consensus        86 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  163 (388)
T 1w3b_A           86 AIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            3445667777777664 57888899999999999999999997643  44567788888899999999999999999988


Q ss_pred             CCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHH
Q 014860          166 TPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQM  245 (417)
Q Consensus       166 ~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m  245 (417)
                      ..+  .+..+|..+...|.+.|++++|...|+++.+..    +.+...|..+...+...|+        +++|...|++.
T Consensus       164 ~~p--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~a  229 (388)
T 1w3b_A          164 TQP--NFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD----PNFLDAYINLGNVLKEARI--------FDRAVAAYLRA  229 (388)
T ss_dssp             HCT--TCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTC--------TTHHHHHHHHH
T ss_pred             hCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC----CCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHH
Confidence            754  568899999999999999999999999999862    4457889999999999999        99999999998


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 014860          246 VNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS  325 (417)
Q Consensus       246 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~  325 (417)
                      .+.. +-+..++..+...|.+.|++++|.+.|+++.+.  -+.+..+|..+...+.+.|++++|.+.|+++.+.. +.+.
T Consensus       230 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~  305 (388)
T 1w3b_A          230 LSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHA  305 (388)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccH
Confidence            8764 345789999999999999999999999999872  23457789999999999999999999999998763 4578


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860          326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLE  405 (417)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~  405 (417)
                      .+++.+...+...|++++|.+.++++.+. .+.+..++..+...|.+.|++++|.+.|+++.+........|..+-..+.
T Consensus       306 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~  384 (388)
T 1w3b_A          306 DSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLK  384 (388)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHH
Confidence            99999999999999999999999999875 34567899999999999999999999999999865446777777666654


Q ss_pred             h
Q 014860          406 D  406 (417)
Q Consensus       406 ~  406 (417)
                      +
T Consensus       385 ~  385 (388)
T 1w3b_A          385 E  385 (388)
T ss_dssp             H
T ss_pred             H
Confidence            4

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.86  E-value=5.7e-19  Score=168.88  Aligned_cols=282  Identities=10%  Similarity=0.035  Sum_probs=236.0

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 014860          103 NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF  182 (417)
Q Consensus       103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~  182 (417)
                      .+..+...+.+.|++++|+.+|+.+.+..  +.+..++..+..++...|++++|.+.++.+.+...  .+...+..+..+
T Consensus        28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~  103 (450)
T 2y4t_A           28 KHLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM--DFTAARLQRGHL  103 (450)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CcHHHHHHHHHH
Confidence            56677888899999999999999997643  56899999999999999999999999999998764  578899999999


Q ss_pred             HHHhCCHHHHHHHHHHhHhCCCCCCCCC-H---HHHHHHHH------------HHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860          183 FAEARKLSRAVYVFKYMKNSRNLECRPS-I---RSYNILFT------------AFLSRGKNTYINHVYMETIRCLFKQMV  246 (417)
Q Consensus       183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~---~~~~~li~------------~~~~~g~~~~~~~~~~~~a~~~~~~m~  246 (417)
                      |.+.|++++|.+.|+++.+.     .|+ .   ..|..+..            .+...|+        +++|..+|+++.
T Consensus       104 ~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~  170 (450)
T 2y4t_A          104 LLKQGKLDEAEDDFKKVLKS-----NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD--------YTAAIAFLDKIL  170 (450)
T ss_dssp             HHHTTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhc-----CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC--------HHHHHHHHHHHH
Confidence            99999999999999999975     454 3   56666644            4888999        999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014860          247 NDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK  326 (417)
Q Consensus       247 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  326 (417)
                      +.. +.+..++..+..+|.+.|++++|.++|+.+.+.  .+.+..+|..+...|...|++++|...|+++.... +.+..
T Consensus       171 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~  246 (450)
T 2y4t_A          171 EVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKR  246 (450)
T ss_dssp             HHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHH--HCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHH
Confidence            764 457888999999999999999999999998763  23568899999999999999999999999998653 22444


Q ss_pred             HHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860          327 SYNSL------------VSALALNGEVEETVKNLWEMIEKQRPVD-----FITYRTVLDEICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       327 ~~~~l------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  389 (417)
                      .+..+            ...|.+.|++++|..+|+++.+.  .|+     ...|..+...+.+.|++++|...++++...
T Consensus       247 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  324 (450)
T 2y4t_A          247 CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM  324 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            45444            78889999999999999999875  344     447788888999999999999999998877


Q ss_pred             CCCChhhHHHHHHHHHhh
Q 014860          390 NLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       390 ~~p~~~t~~~ll~~~~~~  407 (417)
                      ...+...|..+..+|...
T Consensus       325 ~p~~~~~~~~l~~~~~~~  342 (450)
T 2y4t_A          325 EPDNVNALKDRAEAYLIE  342 (450)
T ss_dssp             CTTCHHHHHHHHHHHHHT
T ss_pred             CcccHHHHHHHHHHHHHh
Confidence            545778888888887665

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.84  E-value=1.1e-17  Score=160.03  Aligned_cols=294  Identities=12%  Similarity=0.067  Sum_probs=242.5

Q ss_pred             ChhHHHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHc
Q 014860           87 DDTQFRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLA  165 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  165 (417)
                      ....+.+.+...|+. ..+..+..++...|++++|+..|+.+.+..  +.+...+..+..++...|++++|.+.++.+.+
T Consensus        45 A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  122 (450)
T 2y4t_A           45 ALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK  122 (450)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            334466666666544 467778888899999999999999997654  55789999999999999999999999999998


Q ss_pred             CCCCCCCH---HHHHHH------------HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccch
Q 014860          166 TPSFCGTE---ALYNTI------------IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYI  230 (417)
Q Consensus       166 ~~~~~~~~---~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~  230 (417)
                      ...  .+.   ..+..+            ...+.+.|++++|+..|+++.+.    .+.+...+..+...|...|+    
T Consensus       123 ~~~--~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~----  192 (450)
T 2y4t_A          123 SNP--SENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV----CVWDAELRELRAECFIKEGE----  192 (450)
T ss_dssp             SCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC----
T ss_pred             cCC--CChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHCCC----
Confidence            763  344   566655            44489999999999999999875    24578899999999999999    


Q ss_pred             hhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHH------------HH
Q 014860          231 NHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYL------------IH  298 (417)
Q Consensus       231 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l------------i~  298 (417)
                          +++|.++|+++.+.. +.+..++..+...|...|++++|.+.|+.+....  +.+...+..+            ..
T Consensus       193 ----~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~  265 (450)
T 2y4t_A          193 ----PRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAE  265 (450)
T ss_dssp             ----GGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHH
Confidence                999999999998764 4578899999999999999999999999997632  2344445444            78


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860          299 GLCAQGRTKNARELCDEMKRKGFVPS-----SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR  373 (417)
Q Consensus       299 ~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  373 (417)
                      .|...|++++|...|+++.+.  .|+     ...|..+..++.+.|++++|...++++.+. .+.+...|..+..+|...
T Consensus       266 ~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~~~~~  342 (450)
T 2y4t_A          266 ELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM-EPDNVNALKDRAEAYLIE  342 (450)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHT
T ss_pred             HHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHh
Confidence            899999999999999999874  344     457889999999999999999999999876 234688999999999999


Q ss_pred             CCHhHHHHHHHHHHHCCCCChhhHHHHHH
Q 014860          374 GRAGEAMKLLKELQNKNLIDGYTYTKLLD  402 (417)
Q Consensus       374 g~~~~A~~~~~~m~~~~~p~~~t~~~ll~  402 (417)
                      |++++|...+++..+...-+...+..+-.
T Consensus       343 ~~~~~A~~~~~~al~~~p~~~~~~~~l~~  371 (450)
T 2y4t_A          343 EMYDEAIQDYETAQEHNENDQQIREGLEK  371 (450)
T ss_dssp             TCHHHHHHHHHHHHTTSSSCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence            99999999999999865435555555543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.84  E-value=4.8e-21  Score=190.66  Aligned_cols=128  Identities=16%  Similarity=0.113  Sum_probs=116.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh--hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 014860          251 EPDIFSLNSMIKGYILSNHVNDALRIFHQMGV--VYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSY  328 (417)
Q Consensus       251 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~  328 (417)
                      .--..|||++|++||+.|++++|.++|++|.+  ..|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus       124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY  203 (1134)
T 3spa_A          124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY  203 (1134)
T ss_dssp             CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred             HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence            33457999999999999999999999988764  1489999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH
Q 014860          329 NSLVSALALNGE-VEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGE  378 (417)
Q Consensus       329 ~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~  378 (417)
                      |+||.++|+.|+ .++|.++|++|.+.|+.||..+|++++.++.+.+-++.
T Consensus       204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~  254 (1134)
T 3spa_A          204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKA  254 (1134)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHH
Confidence            999999999998 57899999999999999999999999987776644333

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.83  E-value=9.9e-21  Score=188.41  Aligned_cols=154  Identities=12%  Similarity=0.134  Sum_probs=127.9

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860          172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE  251 (417)
Q Consensus       172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~  251 (417)
                      -..+||+||++|+++|++++|.++|++|.+....|+.||+.|||+||.+|++.|+        +++|.++|++|.+.|+.
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~--------~~eA~~Lf~eM~~~G~~  197 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGA--------FKELVYVLFMVKDAGLT  197 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCC--------HHHHHHHHHHHHHcCCC
Confidence            3578999999999999999999999887653222789999999999999999999        99999999999999999


Q ss_pred             CCHHHHHHHHHHHHhcCCH-HHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------
Q 014860          252 PDIFSLNSMIKGYILSNHV-NDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS------  324 (417)
Q Consensus       252 p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------  324 (417)
                      ||.+|||++|.++|+.|+. ++|.++|++|.+ .|+.||..+|++++.++.+.    .+++.++++ ..+..|+      
T Consensus       198 PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~~-kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~  271 (1134)
T 3spa_A          198 PDLLSYAAALQCMGRQDQDAGTIERCLEQMSQ-EGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPP  271 (1134)
T ss_dssp             CCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH-HTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCC
T ss_pred             CcHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH-cCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCccc
Confidence            9999999999999999984 789999999999 79999999999999877664    344444444 3455554      


Q ss_pred             HHHHHHHHHHHHhcC
Q 014860          325 SKSYNSLVSALALNG  339 (417)
Q Consensus       325 ~~~~~~li~~~~~~g  339 (417)
                      ..+...|.+.|.+.+
T Consensus       272 ~~t~~LL~dl~s~d~  286 (1134)
T 3spa_A          272 VNTSKLLRDVYAKDG  286 (1134)
T ss_dssp             CCCCTTTHHHHCCCS
T ss_pred             ccchHHHHHHHccCC
Confidence            445566667777655

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.82  E-value=3.5e-17  Score=149.35  Aligned_cols=289  Identities=12%  Similarity=0.017  Sum_probs=244.7

Q ss_pred             CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860          102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIY  181 (417)
Q Consensus       102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  181 (417)
                      ..+..+...+...|++++|+++|+.+.+..  +.+...+..++..+...|++++|..+++.+.+...  .+...+..+..
T Consensus        23 ~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~   98 (330)
T 3hym_B           23 DVVVSLAERHYYNCDFKMCYKLTSVVMEKD--PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP--SNPVSWFAVGC   98 (330)
T ss_dssp             TTHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TSTHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHH
Confidence            456667777888899999999999997654  45566777788888999999999999999998764  56788999999


Q ss_pred             HHHHhC-CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860          182 FFAEAR-KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM  260 (417)
Q Consensus       182 ~~~~~g-~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  260 (417)
                      .+...| ++++|.+.|++..+.    .+.+...|..+...+...|+        +++|.+.|++..+.. +.+...+..+
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~~~l  165 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTL----EKTYGPAWIAYGHSFAVESE--------HDQAMAAYFTAAQLM-KGCHLPMLYI  165 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTT----CTTCTHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHT-TTCSHHHHHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhc-cccHHHHHHH
Confidence            999999 999999999999975    24457889999999999999        999999999998765 3356777789


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHH
Q 014860          261 IKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG--------FVPSSKSYNSLV  332 (417)
Q Consensus       261 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~~~~~li  332 (417)
                      ...|...|++++|.+.++...+.  .+.+...+..+...+...|++++|...+++..+..        ...+..++..+.
T Consensus       166 ~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la  243 (330)
T 3hym_B          166 GLEYGLTNNSKLAERFFSQALSI--APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLG  243 (330)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHH
Confidence            99999999999999999999762  34567889999999999999999999999987641        133467899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhhcCc
Q 014860          333 SALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDDFGN  410 (417)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~~~~  410 (417)
                      .+|...|++++|...+++..+.. +.+...+..+...|...|++++|.+.|++..+....+...+..+..++....|+
T Consensus       244 ~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~  320 (330)
T 3hym_B          244 HVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGD  320 (330)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC
T ss_pred             HHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCc
Confidence            99999999999999999998863 346678899999999999999999999999887655788888888888655443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.78  E-value=3.7e-15  Score=137.30  Aligned_cols=281  Identities=10%  Similarity=0.016  Sum_probs=216.2

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF  183 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~  183 (417)
                      +..+...+...|++++|+..|+.+.+..  +.+...+..+...+...|++++|...++.+.+...  .+...+..+...|
T Consensus         6 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~   81 (359)
T 3ieg_A            6 HLELGKKLLAAGQLADALSQFHAAVDGD--PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKM--DFTAARLQRGHLL   81 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CcchHHHHHHHHH
Confidence            4456677788999999999999997654  56789999999999999999999999999998754  5778999999999


Q ss_pred             HHhCCHHHHHHHHHHhHhCCCCCCCC----CHHHHHHH------------HHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860          184 AEARKLSRAVYVFKYMKNSRNLECRP----SIRSYNIL------------FTAFLSRGKNTYINHVYMETIRCLFKQMVN  247 (417)
Q Consensus       184 ~~~g~~~~a~~~~~~m~~~~~~g~~p----~~~~~~~l------------i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~  247 (417)
                      .+.|++++|...|+++.+.     .|    +...+..+            ...+...|+        +++|.++++++.+
T Consensus        82 ~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~  148 (359)
T 3ieg_A           82 LKQGKLDEAEDDFKKVLKS-----NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD--------YTAAITFLDKILE  148 (359)
T ss_dssp             HHHTCHHHHHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHhc-----CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHH
Confidence            9999999999999999975     45    44455544            578889999        9999999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014860          248 DGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS  327 (417)
Q Consensus       248 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~  327 (417)
                      .. +.+...+..+...+...|++++|...++...+.  .+.+...+..+...+...|++++|...+++..+.... +...
T Consensus       149 ~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~  224 (359)
T 3ieg_A          149 VC-VWDAELRELRAECFIKEGEPRKAISDLKAASKL--KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRC  224 (359)
T ss_dssp             HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred             hC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHH
Confidence            65 456788888999999999999999999988762  3456778888888888889998888888888765322 3333


Q ss_pred             HH------------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-H----HHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          328 YN------------SLVSALALNGEVEETVKNLWEMIEKQRPVD-F----ITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       328 ~~------------~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      +.            .+...+.+.|++++|...++++.+..  |+ .    ..+..+...+...|++++|...+++..+..
T Consensus       225 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  302 (359)
T 3ieg_A          225 FAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME  302 (359)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence            32            22555777788888888887777652  22 2    223445667777777777777777777764


Q ss_pred             CCChhhHHHHHHHHHhh
Q 014860          391 LIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       391 ~p~~~t~~~ll~~~~~~  407 (417)
                      ..+...|..+-..+...
T Consensus       303 ~~~~~~~~~~~~~~~~~  319 (359)
T 3ieg_A          303 PDNVNALKDRAEAYLIE  319 (359)
T ss_dssp             TTCHHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHHc
Confidence            44566666666666544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.77  E-value=2.6e-16  Score=146.12  Aligned_cols=282  Identities=10%  Similarity=-0.061  Sum_probs=220.5

Q ss_pred             hccCChhHHHH-HHHHhhcCCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 014860          112 TLQEDPLVCLE-LFNWASKQPRFRH--DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK  188 (417)
Q Consensus       112 ~~~~~~~~A~~-~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~  188 (417)
                      ...++++.|++ .|+...+...-.|  +...+..+...+...|++++|...++.+.+...  .+..++..+..+|.+.|+
T Consensus        36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~~~~g~  113 (368)
T 1fch_A           36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQ  113 (368)
T ss_dssp             ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCcC
Confidence            34578888888 8876543321122  356677888999999999999999999998764  678899999999999999


Q ss_pred             HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHH---------
Q 014860          189 LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS---------  259 (417)
Q Consensus       189 ~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---------  259 (417)
                      +++|+..|+++.+.    .+.+..+|..+...+...|+        +++|.+.|+++.+... .+...+..         
T Consensus       114 ~~~A~~~~~~al~~----~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~  180 (368)
T 1fch_A          114 ELLAISALRRCLEL----KPDNQTALMALAVSFTNESL--------QRQACEILRDWLRYTP-AYAHLVTPAEEGAGGAG  180 (368)
T ss_dssp             HHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTST-TTGGGCC----------
T ss_pred             HHHHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCc-CcHHHHHHHHHHhhhhc
Confidence            99999999999886    24578899999999999999        9999999999998652 22222221         


Q ss_pred             ------HHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          260 ------MIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS  333 (417)
Q Consensus       260 ------li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~  333 (417)
                            .+..+...|++++|...|+.+.+...-.++..++..+...|...|++++|...++++.+.. +.+..+|..+..
T Consensus       181 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~  259 (368)
T 1fch_A          181 LGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGA  259 (368)
T ss_dssp             -----CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             ccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence                  2444458999999999999998743222258899999999999999999999999998763 336789999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC-----------hhhHHHHHH
Q 014860          334 ALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLID-----------GYTYTKLLD  402 (417)
Q Consensus       334 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~-----------~~t~~~ll~  402 (417)
                      .|...|++++|...|+++.+.. +.+...+..+...|.+.|++++|...|++..+....+           ..+|..+..
T Consensus       260 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~  338 (368)
T 1fch_A          260 TLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRL  338 (368)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHH
Confidence            9999999999999999998862 4467889999999999999999999999988753322           678888888


Q ss_pred             HHHhhcCc
Q 014860          403 VLEDDFGN  410 (417)
Q Consensus       403 ~~~~~~~~  410 (417)
                      ++...+..
T Consensus       339 ~~~~~g~~  346 (368)
T 1fch_A          339 ALSMLGQS  346 (368)
T ss_dssp             HHHHHTCG
T ss_pred             HHHHhCCh
Confidence            88776443

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.77  E-value=8.2e-15  Score=135.00  Aligned_cols=299  Identities=11%  Similarity=0.039  Sum_probs=238.7

Q ss_pred             hhHHHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcC
Q 014860           88 DTQFRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT  166 (417)
Q Consensus        88 ~~~~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  166 (417)
                      ...+.+.+...|+. ..+..+...+...|+++.|+..|+.+.+..  +.+...+..+...+...|++++|...++.+.+.
T Consensus        23 ~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  100 (359)
T 3ieg_A           23 LSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS  100 (359)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            34466666666654 356667778889999999999999987654  457899999999999999999999999999987


Q ss_pred             CCCC-CCHHHHHHH------------HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhh
Q 014860          167 PSFC-GTEALYNTI------------IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHV  233 (417)
Q Consensus       167 ~~~~-~~~~~~~~l------------i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~  233 (417)
                      .... .+...+..+            ...+...|++++|.+.|+++.+.    .+.+...+..+...+...|+       
T Consensus       101 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~-------  169 (359)
T 3ieg_A          101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEV----CVWDAELRELRAECFIKEGE-------  169 (359)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-------
T ss_pred             CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHCCC-------
Confidence            5300 133444444            58899999999999999999885    24578889999999999999       


Q ss_pred             hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH------------HHHHHHH
Q 014860          234 YMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYD------------YLIHGLC  301 (417)
Q Consensus       234 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~------------~li~~~~  301 (417)
                       +++|.+.+++..+.. +.+..++..+...+...|++++|.+.++...+..  +.+...+.            .+...+.
T Consensus       170 -~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~  245 (359)
T 3ieg_A          170 -PRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELI  245 (359)
T ss_dssp             -HHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--ccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence             999999999999875 5578899999999999999999999999987632  22333333            2366689


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 014860          302 AQGRTKNARELCDEMKRKGFVPSS----KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAG  377 (417)
Q Consensus       302 ~~g~~~~A~~l~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  377 (417)
                      +.|++++|...++++.+.... +.    ..+..+..+|.+.|++++|...+++..+. .+.+..+|..+...|...|+++
T Consensus       246 ~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~  323 (359)
T 3ieg_A          246 RDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEAYLIEEMYD  323 (359)
T ss_dssp             HTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHHHHHcCCHH
Confidence            999999999999999875322 33    23556778999999999999999999986 2447789999999999999999


Q ss_pred             HHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860          378 EAMKLLKELQNKNLIDGYTYTKLLDVLE  405 (417)
Q Consensus       378 ~A~~~~~~m~~~~~p~~~t~~~ll~~~~  405 (417)
                      +|.+.|++..+...-+...+..+..+..
T Consensus       324 ~A~~~~~~a~~~~p~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          324 EAIQDYEAAQEHNENDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence            9999999999876445666655555443

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.77  E-value=1.2e-16  Score=148.37  Aligned_cols=264  Identities=13%  Similarity=0.012  Sum_probs=216.7

Q ss_pred             CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860          102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIY  181 (417)
Q Consensus       102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  181 (417)
                      ..+..+...+.+.|++++|++.|+.+.+..  +.+..++..+...+...|++++|.+.++++.+...  .+..++..+..
T Consensus        66 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~  141 (365)
T 4eqf_A           66 PGAFEEGLKRLKEGDLPVTILFMEAAILQD--PGDAEAWQFLGITQAENENEQAAIVALQRCLELQP--NNLKALMALAV  141 (365)
T ss_dssp             TTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--CCHHHHHHHHH
Confidence            347778888899999999999999997654  56899999999999999999999999999998764  57899999999


Q ss_pred             HHHHhCCHHHHHHHHHHhHhCCCCCCCCC-----------HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC
Q 014860          182 FFAEARKLSRAVYVFKYMKNSRNLECRPS-----------IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI  250 (417)
Q Consensus       182 ~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-----------~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~  250 (417)
                      .|.+.|++++|+..|+++.+.     .|+           ...+..+...+...|+        +++|.++|+++.+...
T Consensus       142 ~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~p  208 (365)
T 4eqf_A          142 SYTNTSHQQDACEALKNWIKQ-----NPKYKYLVKNKKGSPGLTRRMSKSPVDSSV--------LEGVKELYLEAAHQNG  208 (365)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH-----CHHHHCC-------------------CCHH--------HHHHHHHHHHHHHHSC
T ss_pred             HHHccccHHHHHHHHHHHHHh-----CccchHHHhhhccchHHHHHHHHHHhhhhh--------HHHHHHHHHHHHHhCc
Confidence            999999999999999999875     222           2234455778888898        9999999999998642


Q ss_pred             C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          251 E-PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYN  329 (417)
Q Consensus       251 ~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~  329 (417)
                      . ++..++..+...|...|++++|.+.|++..+.  .+.+..+|..+..+|...|++++|...|+++.+.. +.+..++.
T Consensus       209 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~  285 (365)
T 4eqf_A          209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRY  285 (365)
T ss_dssp             SSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHH
Confidence            2 26889999999999999999999999998773  23568899999999999999999999999998763 23588999


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcC--C---------CCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860          330 SLVSALALNGEVEETVKNLWEMIEKQ--R---------PVDFITYRTVLDEICRRGRAGEAMKLLKE  385 (417)
Q Consensus       330 ~li~~~~~~g~~~~A~~~~~~m~~~g--~---------~p~~~~~~~li~~~~~~g~~~~A~~~~~~  385 (417)
                      .+..+|...|++++|...|+++.+..  .         ..+...|..+..++...|+.+.+..+..+
T Consensus       286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          286 NLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999999999999999999988751  1         11357889999999999999988877654

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.76  E-value=4.9e-16  Score=144.23  Aligned_cols=266  Identities=12%  Similarity=0.023  Sum_probs=222.1

Q ss_pred             CCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 014860          101 RFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII  180 (417)
Q Consensus       101 ~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li  180 (417)
                      ...+..+...+...|++++|+..|+.+.+..  +.+...+..+...+...|++++|.+.++.+.+...  .+..++..+.
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~l~  139 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP--DNQTALMALA  139 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC--CCHHHHHHHH
Confidence            3457778888899999999999999998654  56889999999999999999999999999998764  6788999999


Q ss_pred             HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH---------------HHHHHHhcCCccchhhhhHHHHHHHHHHH
Q 014860          181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI---------------LFTAFLSRGKNTYINHVYMETIRCLFKQM  245 (417)
Q Consensus       181 ~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~---------------li~~~~~~g~~~~~~~~~~~~a~~~~~~m  245 (417)
                      ..|...|++++|...|+++.+..    +.+...+..               .+..+...|+        +++|...|+++
T Consensus       140 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a  207 (368)
T 1fch_A          140 VSFTNESLQRQACEILRDWLRYT----PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL--------FLEVKELFLAA  207 (368)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHTS----TTTGGGCC---------------CTTHHHHHHHH--------HHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC----cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhccc--------HHHHHHHHHHH
Confidence            99999999999999999998862    222222221               2344447888        99999999999


Q ss_pred             HHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014860          246 VNDGIE-PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS  324 (417)
Q Consensus       246 ~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  324 (417)
                      .+.... ++..++..+...|.+.|++++|...++.+...  .+.+...|..+...+...|++++|...++++.+.. +.+
T Consensus       208 ~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~  284 (368)
T 1fch_A          208 VRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGY  284 (368)
T ss_dssp             HHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCc
Confidence            876422 15889999999999999999999999998763  23467899999999999999999999999998753 336


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----------CCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860          325 SKSYNSLVSALALNGEVEETVKNLWEMIEKQR----------PVDFITYRTVLDEICRRGRAGEAMKLLKE  385 (417)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~----------~p~~~~~~~li~~~~~~g~~~~A~~~~~~  385 (417)
                      ...+..+..+|.+.|++++|...|+++.+..-          .....+|..+..+|...|+.++|..++.+
T Consensus       285 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          285 IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            78999999999999999999999999887521          11267899999999999999999998763

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.76  E-value=2.5e-16  Score=143.46  Aligned_cols=266  Identities=10%  Similarity=-0.042  Sum_probs=219.3

Q ss_pred             CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860          102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIY  181 (417)
Q Consensus       102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  181 (417)
                      ..+-.....+...|++++|+.+|+.+.+..  +.+...+..+...+...|++++|.+.++.+.+...  .+..++..+..
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~   97 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAV   97 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--CCHHHHHHHHH
Confidence            455667778889999999999999987654  45888999999999999999999999999988754  57889999999


Q ss_pred             HHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH--------------HH-HHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860          182 FFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL--------------FT-AFLSRGKNTYINHVYMETIRCLFKQMV  246 (417)
Q Consensus       182 ~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~~~~~~~~~a~~~~~~m~  246 (417)
                      .|...|++++|.+.|+++.+..    +.+...+..+              .. .+...|+        +++|.+.++++.
T Consensus        98 ~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~  165 (327)
T 3cv0_A           98 SHTNEHNANAALASLRAWLLSQ----PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE--------YRECRTLLHAAL  165 (327)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTS----TTTTTC--------------------CCTTSHHH--------HHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC----CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc--------HHHHHHHHHHHH
Confidence            9999999999999999998762    1222223222              11 2555666        999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 014860          247 NDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK  326 (417)
Q Consensus       247 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~  326 (417)
                      +.. +.+..++..+...|...|++++|.+.++.+.+.  .+.+...|..+...+...|++++|...++++.+.. +.+..
T Consensus       166 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~  241 (327)
T 3cv0_A          166 EMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVR  241 (327)
T ss_dssp             HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             hhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence            765 447889999999999999999999999998763  23467889999999999999999999999988763 33688


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860          327 SYNSLVSALALNGEVEETVKNLWEMIEKQRPV-----------DFITYRTVLDEICRRGRAGEAMKLLKELQ  387 (417)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~  387 (417)
                      ++..+..+|...|++++|.+.++++.+..-..           +...|..+..++.+.|+.++|..++++..
T Consensus       242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            89999999999999999999999988763111           46788999999999999999999987543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.74  E-value=9.4e-16  Score=148.81  Aligned_cols=285  Identities=11%  Similarity=-0.096  Sum_probs=171.3

Q ss_pred             hhHHHHHHhcCCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCC
Q 014860           88 DTQFRCAVSELPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATP  167 (417)
Q Consensus        88 ~~~~~~~l~~~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  167 (417)
                      ...+.+.+...|+...+..+..++...|+++.|+..|+.+.+..  +.+..++..+..++...|++++|...++.+.+.+
T Consensus        26 ~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  103 (514)
T 2gw1_A           26 IKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASANEGLGKFADAMFDLSVLSLNG  103 (514)
T ss_dssp             HHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            34466677666776677777888888888888888888876543  4567788888888888888888888888776654


Q ss_pred             CCC-----------------------------------------------------------------------------
Q 014860          168 SFC-----------------------------------------------------------------------------  170 (417)
Q Consensus       168 ~~~-----------------------------------------------------------------------------  170 (417)
                      ...                                                                             
T Consensus       104 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (514)
T 2gw1_A          104 DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDES  183 (514)
T ss_dssp             SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCSSCCSS
T ss_pred             CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHHHhcCC
Confidence            310                                                                             


Q ss_pred             CCHHHHHHHHHHHHH---hCCHHHHHHHHHHhHh-----CC-CCCC----CCCHHHHHHHHHHHHhcCCccchhhhhHHH
Q 014860          171 GTEALYNTIIYFFAE---ARKLSRAVYVFKYMKN-----SR-NLEC----RPSIRSYNILFTAFLSRGKNTYINHVYMET  237 (417)
Q Consensus       171 ~~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~-----~~-~~g~----~p~~~~~~~li~~~~~~g~~~~~~~~~~~~  237 (417)
                      .+...+......+..   .|++++|..+|+++.+     .. ..+.    +.+..+|..+...+...|+        +++
T Consensus       184 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~  255 (514)
T 2gw1_A          184 NEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKND--------PLG  255 (514)
T ss_dssp             CHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSC--------HHH
T ss_pred             cHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCC--------HHH
Confidence            002222222222332   6677777777777665     10 0000    2235566666777777777        777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860          238 IRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMK  317 (417)
Q Consensus       238 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  317 (417)
                      |...|+++.+..  |+..++..+...|...|++++|.+.++.+...  .+.+...|..+...+...|++++|...+++..
T Consensus       256 A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  331 (514)
T 2gw1_A          256 AHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKL--DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK  331 (514)
T ss_dssp             HHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTT--CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhc--CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            777777766553  22556666666666666666666666666541  12344556666666666666666666666665


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          318 RKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       318 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      +.... +...+..+...|...|++++|..+++++.+. .+.+...+..+...|...|++++|...++++.+
T Consensus       332 ~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~  400 (514)
T 2gw1_A          332 ELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIE  400 (514)
T ss_dssp             HTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH-STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            54322 3445555555666666666666666655543 122334555555555555666666655555544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.73  E-value=6.6e-16  Score=143.46  Aligned_cols=255  Identities=12%  Similarity=-0.011  Sum_probs=207.3

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN  215 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~  215 (417)
                      +...+..+...+.+.|++++|.+.++.+.+...  .+..++..+...|.+.|++++|+..|+++.+.    .+.+..+|.
T Consensus        64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~  137 (365)
T 4eqf_A           64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP--GDAEAWQFLGITQAENENEQAAIVALQRCLEL----QPNNLKALM  137 (365)
T ss_dssp             TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred             chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc----CCCCHHHHH
Confidence            455688888999999999999999999998764  67899999999999999999999999999885    244688999


Q ss_pred             HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 014860          216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD-----------IFSLNSMIKGYILSNHVNDALRIFHQMGVVY  284 (417)
Q Consensus       216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  284 (417)
                      .+...|...|+        +++|.+.|+++.+..  |+           ...+..+...+.+.|++++|.+.++++.+..
T Consensus       138 ~l~~~~~~~g~--------~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  207 (365)
T 4eqf_A          138 ALAVSYTNTSH--------QQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN  207 (365)
T ss_dssp             HHHHHHHHTTC--------HHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcccc--------HHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC
Confidence            99999999999        999999999998753  22           2233445788999999999999999998743


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014860          285 NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYR  364 (417)
Q Consensus       285 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  364 (417)
                      .-..+..++..+...|...|++++|.+.|++..+.. +.+..+|+.+..+|...|++++|...|+++.+. .+.+..+|.
T Consensus       208 p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~  285 (365)
T 4eqf_A          208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEI-QPGFIRSRY  285 (365)
T ss_dssp             CSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHH
T ss_pred             cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-CCCchHHHH
Confidence            322368899999999999999999999999998763 336889999999999999999999999999886 234578899


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHHCCCC------------ChhhHHHHHHHHHhhc
Q 014860          365 TVLDEICRRGRAGEAMKLLKELQNKNLI------------DGYTYTKLLDVLEDDF  408 (417)
Q Consensus       365 ~li~~~~~~g~~~~A~~~~~~m~~~~~p------------~~~t~~~ll~~~~~~~  408 (417)
                      .+...|.+.|++++|...|++..+....            +...|..+-.++...+
T Consensus       286 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  341 (365)
T 4eqf_A          286 NLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD  341 (365)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence            9999999999999999999998775321            2566777777765553

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.72  E-value=1.2e-14  Score=132.41  Aligned_cols=272  Identities=8%  Similarity=-0.064  Sum_probs=224.7

Q ss_pred             ChhHHHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHH
Q 014860           87 DDTQFRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAK-MYQEMDDVVNQML  164 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~  164 (417)
                      ....+.+.+...|... .+..+...+...|++++|+.+++.+.+..  +.+...+..+...+...| ++++|.+.++...
T Consensus        41 A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~  118 (330)
T 3hym_B           41 CYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY--PSNPVSWFAVGCYYLMVGHKNEHARRYLSKAT  118 (330)
T ss_dssp             HHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC--cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            3344666777777654 55567888889999999999999997654  457888999999999999 9999999999999


Q ss_pred             cCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHH
Q 014860          165 ATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQ  244 (417)
Q Consensus       165 ~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~  244 (417)
                      +...  .+...|..+...|...|++++|...|+++.+.    .+.+...+..+...+...|+        +++|.+.+++
T Consensus       119 ~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~  184 (330)
T 3hym_B          119 TLEK--TYGPAWIAYGHSFAVESEHDQAMAAYFTAAQL----MKGCHLPMLYIGLEYGLTNN--------SKLAERFFSQ  184 (330)
T ss_dssp             TTCT--TCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----TTTCSHHHHHHHHHHHHTTC--------HHHHHHHHHH
T ss_pred             HhCC--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----ccccHHHHHHHHHHHHHHhh--------HHHHHHHHHH
Confidence            8764  56788999999999999999999999999886    23356778889999999999        9999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860          245 MVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY-------NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMK  317 (417)
Q Consensus       245 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  317 (417)
                      ..+.. +.+..++..+...+...|++++|...+++..+..       ....+...|..+...|...|++++|...+++..
T Consensus       185 al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  263 (330)
T 3hym_B          185 ALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQAL  263 (330)
T ss_dssp             HHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            99875 4567899999999999999999999999886521       113446789999999999999999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCCHh
Q 014860          318 RKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI-CRRGRAG  377 (417)
Q Consensus       318 ~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~  377 (417)
                      +... .+...+..+..+|.+.|++++|.+.|++..+.. +.+...+..+..++ ...|+.+
T Consensus       264 ~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          264 VLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             hhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            7643 367889999999999999999999999988752 33667777777777 4555543

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.72  E-value=2.8e-15  Score=145.49  Aligned_cols=286  Identities=12%  Similarity=0.046  Sum_probs=231.7

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF  183 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~  183 (417)
                      +-.....+...|++++|+..|+.+.+..   |+...|..+..++...|++++|.+.++.+.+..+  .+...+..+..+|
T Consensus         9 ~~~~g~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~l~~~~   83 (514)
T 2gw1_A            9 LKDKGNQFFRNKKYDDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP--DYSKVLLRRASAN   83 (514)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh--HHHHHHHHHHHHH
Confidence            3345667788999999999999997654   7999999999999999999999999999998764  6788999999999


Q ss_pred             HHhCCHHHHHHHHHHhHhCCCCCC--------------------------------------------------------
Q 014860          184 AEARKLSRAVYVFKYMKNSRNLEC--------------------------------------------------------  207 (417)
Q Consensus       184 ~~~g~~~~a~~~~~~m~~~~~~g~--------------------------------------------------------  207 (417)
                      .+.|++++|...|+++.+......                                                        
T Consensus        84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (514)
T 2gw1_A           84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS  163 (514)
T ss_dssp             HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred             HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence            999999999999999877521000                                                        


Q ss_pred             -------------------CCCHHHHHHHHHHHHh---cCCccchhhhhHHHHHHHHHHHHH-----CCCC--------C
Q 014860          208 -------------------RPSIRSYNILFTAFLS---RGKNTYINHVYMETIRCLFKQMVN-----DGIE--------P  252 (417)
Q Consensus       208 -------------------~p~~~~~~~li~~~~~---~g~~~~~~~~~~~~a~~~~~~m~~-----~g~~--------p  252 (417)
                                         +.+...+......+..   .|+        +++|..+|+++.+     ..-.        .
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (514)
T 2gw1_A          164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPES--------YDKADESFTKAARLFEEQLDKNNEDEKLKEK  235 (514)
T ss_dssp             HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTH--------HHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred             HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhcc--------HHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence                               0012233333333333   677        9999999999987     3112        2


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860          253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLV  332 (417)
Q Consensus       253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li  332 (417)
                      +..++..+...+...|++++|...++.+.+. .  |+...+..+...+...|++++|...++++.+.. +.+...+..+.
T Consensus       236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~-~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~  311 (514)
T 2gw1_A          236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIEL-F--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRG  311 (514)
T ss_dssp             HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH-C--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-C--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHH
Confidence            3567788889999999999999999999773 2  448889999999999999999999999998764 33677899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          333 SALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                      ..|...|++++|...++++.+.. +.+...+..+...|...|++++|..+++++.+....+...+..+...+.+.
T Consensus       312 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  385 (514)
T 2gw1_A          312 QMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDK  385 (514)
T ss_dssp             HHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHT
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHC
Confidence            99999999999999999999863 335678889999999999999999999999887554667777777766655

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.70  E-value=1.7e-14  Score=129.64  Aligned_cols=253  Identities=11%  Similarity=0.042  Sum_probs=204.0

Q ss_pred             HHHhccCChhHHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 014860          109 NVMTLQEDPLVCLELFNWASKQPRFRHDA--STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA  186 (417)
Q Consensus       109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  186 (417)
                      +-.-..|++..|+..++....   ..|+.  .....+.+++...|++++|...++.   . .. |+..++..+...+...
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~-~~~~a~~~la~~~~~~   78 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SA-PELQAVRMFAEYLASH   78 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SC-HHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CC-hhHHHHHHHHHHHcCC
Confidence            344567999999999977632   23443  4556678999999999999876643   2 22 6788899999999999


Q ss_pred             CCHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014860          187 RKLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYI  265 (417)
Q Consensus       187 g~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~  265 (417)
                      |+.++|++.++++...   +..| +...+..+...+...|+        +++|++.+++      +.+...+..+...|.
T Consensus        79 ~~~~~A~~~l~~ll~~---~~~P~~~~~~~~la~~~~~~g~--------~~~Al~~l~~------~~~~~~~~~l~~~~~  141 (291)
T 3mkr_A           79 SRRDAIVAELDREMSR---SVDVTNTTFLLMAASIYFYDQN--------PDAALRTLHQ------GDSLECMAMTVQILL  141 (291)
T ss_dssp             TTHHHHHHHHHHHHHS---CCCCSCHHHHHHHHHHHHHTTC--------HHHHHHHHTT------CCSHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHhc---ccCCCCHHHHHHHHHHHHHCCC--------HHHHHHHHhC------CCCHHHHHHHHHHHH
Confidence            9999999999999875   4434 56667778899999999        9999999987      467889999999999


Q ss_pred             hcCCHHHHHHHHHHhhhhCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          266 LSNHVNDALRIFHQMGVVYNYLPNSFSY---DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE  342 (417)
Q Consensus       266 ~~g~~~~a~~~~~~m~~~~~~~~~~~~~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  342 (417)
                      +.|++++|.+.|+.+.+.   .|+....   ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|+++
T Consensus       142 ~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~  217 (291)
T 3mkr_A          142 KLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWE  217 (291)
T ss_dssp             HTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHH
T ss_pred             HCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHH
Confidence            999999999999999873   2553211   22334444568999999999999987 4558899999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhH-HHHHHHHHHHCCC
Q 014860          343 ETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGE-AMKLLKELQNKNL  391 (417)
Q Consensus       343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~~~  391 (417)
                      +|...|++..+. -+-+..++..++..+...|+.++ +.++++++.+.+.
T Consensus       218 eA~~~l~~al~~-~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P  266 (291)
T 3mkr_A          218 AAEGVLQEALDK-DSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR  266 (291)
T ss_dssp             HHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence            999999998886 24477789999999999999876 6789999988764

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.68  E-value=6e-14  Score=136.96  Aligned_cols=75  Identities=7%  Similarity=-0.036  Sum_probs=60.1

Q ss_pred             ChhHHHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 014860           87 DDTQFRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQM  163 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  163 (417)
                      +...+.+.+...|+. ..+..+..++...|++++|++.|+.+.+..  +.+..++..+..++...|++++|.+.++.+
T Consensus        44 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~  119 (537)
T 3fp2_A           44 AIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASANESLGNFTDAMFDLSVL  119 (537)
T ss_dssp             CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            566688888877655 456677888889999999999999987654  557888899999999999999998887533

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.68  E-value=5.2e-14  Score=137.40  Aligned_cols=269  Identities=10%  Similarity=0.026  Sum_probs=220.9

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF  183 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~  183 (417)
                      +..+...+.+.|++++|++.|+.+.+..  +.+...+..+..++...|++++|.+.++.+.+..+  .+...+..+..+|
T Consensus        28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~  103 (537)
T 3fp2_A           28 LKNRGNHFFTAKNFNEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP--DHSKALLRRASAN  103 (537)
T ss_dssp             HHHHHHHHHHTTCCC-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHH
Confidence            4556777889999999999999997654  56899999999999999999999999999998764  6788999999999


Q ss_pred             HHhCCHHHHHHHHHHhHhCCC-----------------------------------------------------------
Q 014860          184 AEARKLSRAVYVFKYMKNSRN-----------------------------------------------------------  204 (417)
Q Consensus       184 ~~~g~~~~a~~~~~~m~~~~~-----------------------------------------------------------  204 (417)
                      ...|++++|...|+.+...++                                                           
T Consensus       104 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  183 (537)
T 3fp2_A          104 ESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSV  183 (537)
T ss_dssp             HHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTS
T ss_pred             HHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHH
Confidence            999999999988753311100                                                           


Q ss_pred             ---------------------------------------------CCCCCC--------HHHHHHHHHHHHhcCCccchh
Q 014860          205 ---------------------------------------------LECRPS--------IRSYNILFTAFLSRGKNTYIN  231 (417)
Q Consensus       205 ---------------------------------------------~g~~p~--------~~~~~~li~~~~~~g~~~~~~  231 (417)
                                                                   ....|+        ..+|..+...+...|+     
T Consensus       184 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~-----  258 (537)
T 3fp2_A          184 NTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNN-----  258 (537)
T ss_dssp             CCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTC-----
T ss_pred             hhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhccc-----
Confidence                                                         001111        2235555566777788     


Q ss_pred             hhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014860          232 HVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARE  311 (417)
Q Consensus       232 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~  311 (417)
                         +++|.+.|++..+.  .|+..++..+...+...|++++|.+.++...+..  +.+..+|..+...+...|++++|..
T Consensus       259 ---~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~  331 (537)
T 3fp2_A          259 ---LLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQDYKNAKE  331 (537)
T ss_dssp             ---HHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             ---HHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCCHHHHHH
Confidence               99999999999986  4668889999999999999999999999987632  3467889999999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          312 LCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       312 l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      .+++..+.... +...+..+..+|...|++++|..+++++.+.. +.+...+..+...|...|++++|.+.|++..+..
T Consensus       332 ~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          332 DFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            99999876422 56789999999999999999999999999863 4456788899999999999999999999987654

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.68  E-value=4e-14  Score=128.75  Aligned_cols=253  Identities=9%  Similarity=-0.069  Sum_probs=207.5

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN  215 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~  215 (417)
                      +...+......+...|++++|..+++.+.+...  .+...+..+...+.+.|++++|.+.|+++.+.    .+.+..+|.
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~   93 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP--EREEAWRSLGLTQAENEKDGLAIIALNHARML----DPKDIAVHA   93 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CcCCHHHHH
Confidence            344566677788899999999999999988754  57889999999999999999999999999886    245788899


Q ss_pred             HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH--------------HH-HHHhcCCHHHHHHHHHHh
Q 014860          216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM--------------IK-GYILSNHVNDALRIFHQM  280 (417)
Q Consensus       216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l--------------i~-~~~~~g~~~~a~~~~~~m  280 (417)
                      .+...+...|+        +++|.+.++++.+.. +.+...+..+              .. .+...|++++|.+.++.+
T Consensus        94 ~la~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  164 (327)
T 3cv0_A           94 ALAVSHTNEHN--------ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA  164 (327)
T ss_dssp             HHHHHHHHTTC--------HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC--------HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence            99999999999        999999999999764 2223333333              22 377889999999999998


Q ss_pred             hhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 014860          281 GVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF  360 (417)
Q Consensus       281 ~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  360 (417)
                      .+..  +.+...+..+...|...|++++|.+.++++.+.. +.+..++..+...|...|++++|...++++.+.. +.+.
T Consensus       165 ~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~  240 (327)
T 3cv0_A          165 LEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYV  240 (327)
T ss_dssp             HHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred             HhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCH
Confidence            7732  3478899999999999999999999999998763 3367889999999999999999999999998863 3467


Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC------------ChhhHHHHHHHHHhh
Q 014860          361 ITYRTVLDEICRRGRAGEAMKLLKELQNKNLI------------DGYTYTKLLDVLEDD  407 (417)
Q Consensus       361 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p------------~~~t~~~ll~~~~~~  407 (417)
                      ..+..+...|...|++++|.+.+++.......            +...|..+..++.+.
T Consensus       241 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  299 (327)
T 3cv0_A          241 RVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM  299 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence            88999999999999999999999998876432            356777777777665

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.67  E-value=3.3e-16  Score=145.07  Aligned_cols=224  Identities=8%  Similarity=0.065  Sum_probs=58.9

Q ss_pred             CCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHH
Q 014860           99 PPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNT  178 (417)
Q Consensus        99 p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~  178 (417)
                      +.+..|..+..++...+++++|++.|.+.       +|..+|..++.++...|++++|...++...+.  . +++.+.+.
T Consensus        30 ~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~-~~~~i~~~   99 (449)
T 1b89_A           30 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--A-RESYVETE   99 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--C-ccchhHHH
Confidence            33445555555555555555555555321       34445555555555555555555544443332  1 33444555


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN  258 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  258 (417)
                      ++.+|.+.|+++++.++++          .|+..+|+.+...|...|.        +++|...|..+         ..|.
T Consensus       100 Li~~Y~Klg~l~e~e~f~~----------~pn~~a~~~IGd~~~~~g~--------yeeA~~~Y~~a---------~n~~  152 (449)
T 1b89_A          100 LIFALAKTNRLAELEEFIN----------GPNNAHIQQVGDRCYDEKM--------YDAAKLLYNNV---------SNFG  152 (449)
T ss_dssp             ---------CHHHHTTTTT----------CC----------------C--------TTTHHHHHHHT---------TCHH
T ss_pred             HHHHHHHhCCHHHHHHHHc----------CCcHHHHHHHHHHHHHcCC--------HHHHHHHHHHh---------hhHH
Confidence            5555555555555544442          1333455555555555555        55555555543         2455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860          259 SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN  338 (417)
Q Consensus       259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~  338 (417)
                      .+..++.+.|++++|.+.+..+       .++.+|..++.+|...|+++.|......     +..++.-...++..|.+.
T Consensus       153 ~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~  220 (449)
T 1b89_A          153 RLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDR  220 (449)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHC
Confidence            5555555555555555555544       2344555555555555555555332222     111222233445555555


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014860          339 GEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR  372 (417)
Q Consensus       339 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  372 (417)
                      |++++|..+++...... +-....|+-|-.+|++
T Consensus       221 G~~eEai~lLe~aL~le-~ah~~~ftel~il~~k  253 (449)
T 1b89_A          221 GYFEELITMLEAALGLE-RAHMGMFTELAILYSK  253 (449)
T ss_dssp             TCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence            55555555555444321 2233344444444443

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.65  E-value=5.6e-14  Score=126.29  Aligned_cols=239  Identities=14%  Similarity=0.081  Sum_probs=193.5

Q ss_pred             HHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc
Q 014860          145 RKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR  224 (417)
Q Consensus       145 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~  224 (417)
                      +-....|++++|++..+........ ........+.++|...|+++.|+..++..       -+|+..++..+...+...
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~-~~~e~~~~l~r~yi~~g~~~~al~~~~~~-------~~~~~~a~~~la~~~~~~   78 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPE-RDVERDVFLYRAYLAQRKYGVVLDEIKPS-------SAPELQAVRMFAEYLASH   78 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHH-HHHHHHHHHHHHHHHTTCHHHHHHHSCTT-------SCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCch-hhHHHHHHHHHHHHHCCCHHHHHHHhccc-------CChhHHHHHHHHHHHcCC
Confidence            4455789999999998876554321 11345567889999999999999866542       256788899999999999


Q ss_pred             CCccchhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhc
Q 014860          225 GKNTYINHVYMETIRCLFKQMVNDGIEPD-IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQ  303 (417)
Q Consensus       225 g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  303 (417)
                      ++        .++|++.++++...+..|+ ...+..+-..+...|++++|.+.++.       ..+...+..+...|.+.
T Consensus        79 ~~--------~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~l~~~~~~~  143 (291)
T 3mkr_A           79 SR--------RDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAMTVQILLKL  143 (291)
T ss_dssp             TT--------HHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHHHHHHHHHT
T ss_pred             Cc--------HHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHHHHHHHHHC
Confidence            99        9999999999998876564 55666677899999999999999987       37788999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 014860          304 GRTKNARELCDEMKRKGFVPSSKSY---NSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAM  380 (417)
Q Consensus       304 g~~~~A~~l~~~m~~~g~~p~~~~~---~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  380 (417)
                      |++++|.+.++++.+..  |+....   ..++..+...|++++|..+|+++.+. .+.+...|+.+..++.+.|++++|.
T Consensus       144 g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~  220 (291)
T 3mkr_A          144 DRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAE  220 (291)
T ss_dssp             TCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999864  553211   23344455669999999999999987 5668889999999999999999999


Q ss_pred             HHHHHHHHCCCCChhhHHHHHHHHHhhcC
Q 014860          381 KLLKELQNKNLIDGYTYTKLLDVLEDDFG  409 (417)
Q Consensus       381 ~~~~~m~~~~~p~~~t~~~ll~~~~~~~~  409 (417)
                      ..|++......-+..++..+...+...+.
T Consensus       221 ~~l~~al~~~p~~~~~l~~l~~~~~~~g~  249 (291)
T 3mkr_A          221 GVLQEALDKDSGHPETLINLVVLSQHLGK  249 (291)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999998875588888888877776633

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.7e-13  Score=120.14  Aligned_cols=229  Identities=14%  Similarity=0.091  Sum_probs=193.7

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HH
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IR  212 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~  212 (417)
                      ...+..+...+...|++++|.+.++...+..   .+...+..+..+|...|++++|+..|++..+... ...++    ..
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~   80 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGR-EMRADYKVISK   80 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCc-ccccchHHHHH
Confidence            4567788889999999999999999998876   5678999999999999999999999999887410 01112    58


Q ss_pred             HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHH
Q 014860          213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS  292 (417)
Q Consensus       213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  292 (417)
                      +|..+...+...|+        +++|.+.|++..+..  |+.       ..+.+.|++++|.+.++.+...  .+.+...
T Consensus        81 ~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~  141 (258)
T 3uq3_A           81 SFARIGNAYHKLGD--------LKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEE  141 (258)
T ss_dssp             HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHH
T ss_pred             HHHHHHHHHHHccc--------HHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHH
Confidence            89999999999999        999999999998853  443       3566778999999999998762  2235677


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 014860          293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR  372 (417)
Q Consensus       293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  372 (417)
                      +..+...+...|++++|...+++..+.. +.+..+|..+..+|...|++++|...+++..+.. +.+...|..+...|..
T Consensus       142 ~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          142 ARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIA  219 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHH
Confidence            8889999999999999999999998764 3368899999999999999999999999998863 4457889999999999


Q ss_pred             cCCHhHHHHHHHHHHHCC
Q 014860          373 RGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       373 ~g~~~~A~~~~~~m~~~~  390 (417)
                      .|++++|.+.+++..+..
T Consensus       220 ~g~~~~A~~~~~~a~~~~  237 (258)
T 3uq3_A          220 VKEYASALETLDAARTKD  237 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHhC
Confidence            999999999999988765

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.60  E-value=8.2e-15  Score=135.78  Aligned_cols=240  Identities=10%  Similarity=0.071  Sum_probs=103.9

Q ss_pred             hccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHH
Q 014860          112 TLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSR  191 (417)
Q Consensus       112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~  191 (417)
                      .+.|+.++|.++++.+       +++.+|..+..++.+.|++++|.+.|.+.       +|..+|..++..+...|++++
T Consensus        14 ~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika-------~D~~~y~~V~~~ae~~g~~Ee   79 (449)
T 1b89_A           14 EHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA-------DDPSSYMEVVQAANTSGNWEE   79 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC-------CCHHHHHHHHHHHHhCCCHHH
Confidence            4567899999999877       23459999999999999999999999652       677799999999999999999


Q ss_pred             HHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          192 AVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN  271 (417)
Q Consensus       192 a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  271 (417)
                      |+++++...+.     .++..+.+.++.+|.+.|+        ++++.++++       .|+..+|+.+...|...|+++
T Consensus        80 Ai~yl~~ark~-----~~~~~i~~~Li~~Y~Klg~--------l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~ye  139 (449)
T 1b89_A           80 LVKYLQMARKK-----ARESYVETELIFALAKTNR--------LAELEEFIN-------GPNNAHIQQVGDRCYDEKMYD  139 (449)
T ss_dssp             ----------------------------------C--------HHHHTTTTT-------CC----------------CTT
T ss_pred             HHHHHHHHHHh-----CccchhHHHHHHHHHHhCC--------HHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHH
Confidence            99988777764     4567889999999999999        999988884       377789999999999999999


Q ss_pred             HHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860          272 DALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEM  351 (417)
Q Consensus       272 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  351 (417)
                      +|...|..+.          .|..++.++.+.|++++|.+.+.++      .+..+|..++.+|+..|+++.|...... 
T Consensus       140 eA~~~Y~~a~----------n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-  202 (449)
T 1b89_A          140 AAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-  202 (449)
T ss_dssp             THHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-
T ss_pred             HHHHHHHHhh----------hHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-
Confidence            9999999883          5999999999999999999999988      2889999999999999999999665543 


Q ss_pred             HHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHh
Q 014860          352 IEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED  406 (417)
Q Consensus       352 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~  406 (417)
                          +..++.-...++..|.+.|++++|..+++.-....--....|.-|--.+++
T Consensus       203 ----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          203 ----IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             ----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             ----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence                333555566799999999999999999998876652245555555444443

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.59  E-value=4.7e-14  Score=125.07  Aligned_cols=249  Identities=9%  Similarity=-0.048  Sum_probs=189.5

Q ss_pred             hccCChhHHHHHHHHhhcCCCCC--CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH
Q 014860          112 TLQEDPLVCLELFNWASKQPRFR--HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL  189 (417)
Q Consensus       112 ~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~  189 (417)
                      ...+++++|++.|+.+.+.....  .+...+..+...+...|++++|.+.++.+.+...  .+..++..+...|...|++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~   93 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNF   93 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHccCH
Confidence            34578999999999987653222  2567788888999999999999999999988764  5788999999999999999


Q ss_pred             HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860          190 SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH  269 (417)
Q Consensus       190 ~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  269 (417)
                      ++|...|++..+.    .+.+..+|..+...+...|+        +++|.+.|+++.+..  |+.......+..+...|+
T Consensus        94 ~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~  159 (275)
T 1xnf_A           94 DAAYEAFDSVLEL----DPTYNYAHLNRGIALYYGGR--------DKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLD  159 (275)
T ss_dssp             HHHHHHHHHHHHH----CTTCTHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhc----CccccHHHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcC
Confidence            9999999999885    23457889999999999999        999999999998753  555555556666677899


Q ss_pred             HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCCHHHHHH
Q 014860          270 VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP---SSKSYNSLVSALALNGEVEETVK  346 (417)
Q Consensus       270 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~A~~  346 (417)
                      +++|...++......  +++...+. ++..+...++.++|...+.+........   +..++..+...|...|++++|..
T Consensus       160 ~~~A~~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  236 (275)
T 1xnf_A          160 EKQAKEVLKQHFEKS--DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA  236 (275)
T ss_dssp             HHHHHHHHHHHHHHS--CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHhcC--CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHH
Confidence            999999997776532  23333443 6677778888899999998876542211   15778888999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHH
Q 014860          347 NLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLL  383 (417)
Q Consensus       347 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~  383 (417)
                      .|++..+.  .|+.  +.....++...|++++|++.+
T Consensus       237 ~~~~al~~--~p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          237 LFKLAVAN--NVHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHHHHTT--CCTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHhC--Cchh--HHHHHHHHHHHHHHHhhHHHH
Confidence            99998875  3432  333355677788888887765

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.59  E-value=1.6e-12  Score=113.73  Aligned_cols=200  Identities=9%  Similarity=-0.020  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI  216 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~  216 (417)
                      ...+..+...+...|++++|.+.++.+.+...  .+...+..+...|.+.|++++|.+.|+++.+.    .+.+...|..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~  110 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDP--SSADAHAALAVVFQTEMEPKLADEEYRKALAS----DSRNARVLNN  110 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----CcCcHHHHHH
Confidence            34445555555555555555555555555432  34455555555555555555555555555443    1223445555


Q ss_pred             HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 014860          217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP-DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDY  295 (417)
Q Consensus       217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~  295 (417)
                      +...+...|+        +++|.++|+++.+.+..| +...+..+...+...|++++|.+.++...+..  +.+...+..
T Consensus       111 la~~~~~~g~--------~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~  180 (252)
T 2ho1_A          111 YGGFLYEQKR--------YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALE  180 (252)
T ss_dssp             HHHHHHHTTC--------HHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHH
T ss_pred             HHHHHHHHhH--------HHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--cccHHHHHH
Confidence            5555555555        555555555554422222 23344444444555555555555555444311  123344444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          296 LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       296 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      +...+...|++++|...++++.+.. +.+...+..+...+...|+.++|.++++++.+
T Consensus       181 la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~  237 (252)
T 2ho1_A          181 MADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR  237 (252)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4444444444444444444444321 12333444444444444444444444444443

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.59  E-value=2.1e-12  Score=110.51  Aligned_cols=204  Identities=9%  Similarity=-0.037  Sum_probs=134.9

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860          172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE  251 (417)
Q Consensus       172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~  251 (417)
                      +...+..+...+...|++++|.+.|+++.+.    .+.+...|..+...+...|+        +++|.+.+++..+.. +
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~-~   73 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKS----DPKNELAWLVRAEIYQYLKV--------NDKAQESFRQALSIK-P   73 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-T
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh----CccchHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhC-C
Confidence            3456666667777777777777777776654    13346666777777777777        777777777766543 3


Q ss_pred             CCHHHHHHHHHHHHhc-CCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          252 PDIFSLNSMIKGYILS-NHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYN  329 (417)
Q Consensus       252 p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~  329 (417)
                      .+..++..+...+... |++++|.+.++.+.+ .+..| +...+..+...+...|++++|...++++.+.. +.+...+.
T Consensus        74 ~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  151 (225)
T 2vq2_A           74 DSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFK  151 (225)
T ss_dssp             TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHH
T ss_pred             CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHH
Confidence            3556666677777777 777777777777665 22223 35566677777777777777777777776643 22466677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          330 SLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       330 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      .+..+|...|++++|..+++++.+..-..+...+..+...+...|+.++|..+++.+....
T Consensus       152 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~  212 (225)
T 2vq2_A          152 ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF  212 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence            7777777777777777777777665211455666666667777777777777777776543

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.58  E-value=6e-13  Score=116.52  Aligned_cols=224  Identities=11%  Similarity=0.006  Sum_probs=190.5

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC-CC----HHHHHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC-GT----EALYNT  178 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~----~~~~~~  178 (417)
                      +..+...+...|++++|+..|+.+.+..   .+...+..+...+...|++++|.+.++...+..... ++    ..++..
T Consensus         8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            8 EKAEGNKFYKARQFDEAIEHYNKAWELH---KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS---CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            4556777889999999999999997654   778999999999999999999999999998754210 12    588999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN  258 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  258 (417)
                      +...|.+.|++++|...|++..+.     .|+.       ..+...|+        +++|.+.++++.+.. +.+...+.
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~-----~~~~-------~~~~~~~~--------~~~a~~~~~~~~~~~-~~~~~~~~  143 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTE-----HRTA-------DILTKLRN--------AEKELKKAEAEAYVN-PEKAEEAR  143 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----CCCH-------HHHHHHHH--------HHHHHHHHHHHHHCC-HHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhc-----Cchh-------HHHHHHhH--------HHHHHHHHHHHHHcC-cchHHHHH
Confidence            999999999999999999999986     4553       34666677        999999999998864 34567888


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860          259 SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN  338 (417)
Q Consensus       259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~  338 (417)
                      .+...+...|++++|.+.++...+..  +.+...|..+...|...|++++|...+++..+.. +.+...|..+..+|...
T Consensus       144 ~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~  220 (258)
T 3uq3_A          144 LEGKEYFTKSDWPNAVKAYTEMIKRA--PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAV  220 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHH
Confidence            89999999999999999999997732  3468889999999999999999999999998764 33688899999999999


Q ss_pred             CCHHHHHHHHHHHHHc
Q 014860          339 GEVEETVKNLWEMIEK  354 (417)
Q Consensus       339 g~~~~A~~~~~~m~~~  354 (417)
                      |++++|...+++..+.
T Consensus       221 g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          221 KEYASALETLDAARTK  236 (258)
T ss_dssp             TCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            9999999999998875

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.57  E-value=4.9e-13  Score=114.67  Aligned_cols=200  Identities=14%  Similarity=0.007  Sum_probs=135.6

Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHH
Q 014860          134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRS  213 (417)
Q Consensus       134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~  213 (417)
                      +++...+..+...+.+.|++++|...++...+..+  .+...+..+...+.+.|++++|+..|++..+..    +.+...
T Consensus         2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~----P~~~~a   75 (217)
T 2pl2_A            2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENP--QDPEALYWLARTQLKLGLVNPALENGKTLVART----PRYLGG   75 (217)
T ss_dssp             --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCcHHH
Confidence            56778888889999999999999999999998765  678899999999999999999999999998861    345778


Q ss_pred             HHHHHHHHHhc-----------CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860          214 YNILFTAFLSR-----------GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       214 ~~~li~~~~~~-----------g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      |..+...+...           |+        +++|+..|++..+.. +-+...+..+-..+...|++++|.+.|++..+
T Consensus        76 ~~~lg~~~~~~~~~~~~~~~~~g~--------~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  146 (217)
T 2pl2_A           76 YMVLSEAYVALYRQAEDRERGKGY--------LEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALA  146 (217)
T ss_dssp             HHHHHHHHHHHHHTCSSHHHHHHH--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhhhhhcccccC--------HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence            88888888887           66        777777777766653 23455666666666677777777777766665


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860          283 VYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMI  352 (417)
Q Consensus       283 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  352 (417)
                       ..  .+...+..+...|...|++++|...|++..+.. +-+...+..+...+...|+.++|...|++..
T Consensus       147 -~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          147 -LE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             -HC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             -cc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence             23  556666666666666667776666666666542 1245566666666666666666666665543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.57  E-value=2.9e-12  Score=112.08  Aligned_cols=202  Identities=9%  Similarity=-0.041  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC
Q 014860          173 EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP  252 (417)
Q Consensus       173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p  252 (417)
                      ...+..+...|...|++++|...|+++.+.    .+.+...|..+...+...|+        +++|.+.|+++.+.. +.
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~a~~~~-~~  103 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEI----DPSSADAHAALAVVFQTEME--------PKLADEEYRKALASD-SR  103 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhc----CCChHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHHC-cC
Confidence            455666666667777777777777766654    13355666666777777777        777777777666543 23


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860          253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSL  331 (417)
Q Consensus       253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l  331 (417)
                      +...+..+...|...|++++|.+.++++.. .+..| +...+..+...+...|++++|...+++..+.. +.+...+..+
T Consensus       104 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l  181 (252)
T 2ho1_A          104 NARVLNNYGGFLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEM  181 (252)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence            556666666677777777777777776654 22233 45556666666777777777777777666543 2245666666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          332 VSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       332 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      ...|...|++++|..+++++.+. .+.+...+..+...+...|+.++|.++++++.+..
T Consensus       182 a~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~  239 (252)
T 2ho1_A          182 ADLLYKEREYVPARQYYDLFAQG-GGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY  239 (252)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTT-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-CcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence            77777777777777777766654 23455566666666677777777777777766653

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.56  E-value=2.7e-12  Score=113.61  Aligned_cols=250  Identities=10%  Similarity=-0.047  Sum_probs=171.6

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHH
Q 014860          139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILF  218 (417)
Q Consensus       139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li  218 (417)
                      .+......+...|++++|.+.++...+..+  .+...+..+...|.+.|++++|+..|++..+.. ........+|..+.
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~lg   81 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKY--NSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV-NATKAKSADFEYYG   81 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTC--CCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CTTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc-CchhHHHHHHHHHH
Confidence            344555667778888888888888877654  345577777778888888888888888887741 11122245577888


Q ss_pred             HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 014860          219 TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIH  298 (417)
Q Consensus       219 ~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  298 (417)
                      ..+...|+        +++|.+.|++..+.. +.+..++..+...|...|++++|.+.+++..+.  .+.+...|..+..
T Consensus        82 ~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~  150 (272)
T 3u4t_A           82 KILMKKGQ--------DSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRP--TTTDPKVFYELGQ  150 (272)
T ss_dssp             HHHHHTTC--------HHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCS--SCCCHHHHHHHHH
T ss_pred             HHHHHccc--------HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhc--CCCcHHHHHHHHH
Confidence            88888888        888888888877654 335567788888888888888888888877652  2345566666662


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHc-CCCCC------HHHHHHHHH
Q 014860          299 GLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE---VEETVKNLWEMIEK-QRPVD------FITYRTVLD  368 (417)
Q Consensus       299 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~-g~~p~------~~~~~~li~  368 (417)
                      .+...+++++|.+.|++..+.. +.+...+..+..++...|+   .++|...+++..+. .-.|+      ...|..+..
T Consensus       151 ~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  229 (272)
T 3u4t_A          151 AYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAY  229 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            4444558888888888887653 2246677777777777777   77777777777664 11233      246777777


Q ss_pred             HHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHH
Q 014860          369 EICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDV  403 (417)
Q Consensus       369 ~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~  403 (417)
                      .|...|++++|.+.|++..+...-+...+..+-..
T Consensus       230 ~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~  264 (272)
T 3u4t_A          230 YYTINRDKVKADAAWKNILALDPTNKKAIDGLKMK  264 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC--
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhh
Confidence            88888888888888888887764355544444333

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.56  E-value=2.2e-11  Score=108.06  Aligned_cols=225  Identities=10%  Similarity=-0.020  Sum_probs=190.8

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHhHhCCCCCCCCCH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE----ARKLSRAVYVFKYMKNSRNLECRPSI  211 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~g~~p~~  211 (417)
                      +..++..+...+...|++++|.+.++...+.    .+...+..+...|..    .+++++|...|++..+.   +   +.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~---~---~~   74 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL----KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL---N---YS   74 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC---C---CH
Confidence            6677778888888899999999999998883    456788888888999    99999999999998886   3   67


Q ss_pred             HHHHHHHHHHHh----cCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhh
Q 014860          212 RSYNILFTAFLS----RGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL----SNHVNDALRIFHQMGVV  283 (417)
Q Consensus       212 ~~~~~li~~~~~----~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~  283 (417)
                      ..+..+...|..    .++        .++|++.|++..+.+   +...+..+-..|..    .+++++|.+.|+...+ 
T Consensus        75 ~a~~~lg~~~~~g~~~~~~--------~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-  142 (273)
T 1ouv_A           75 NGCHLLGNLYYSGQGVSQN--------TNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-  142 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCC--------HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHhCCCCcccC--------HHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh-
Confidence            888888888888    888        999999999988875   67788888888888    8999999999998887 


Q ss_pred             CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 014860          284 YNYLPNSFSYDYLIHGLCA----QGRTKNARELCDEMKRKGFVPSSKSYNSLVSALAL----NGEVEETVKNLWEMIEKQ  355 (417)
Q Consensus       284 ~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  355 (417)
                      .+   +...+..+-..|..    .+++++|...|++..+.+   +...+..+...|..    .++.++|...|++..+.+
T Consensus       143 ~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~  216 (273)
T 1ouv_A          143 LN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE  216 (273)
T ss_dssp             TT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             cC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC
Confidence            33   66777788888887    899999999999988875   56788888889999    999999999999988874


Q ss_pred             CCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCC
Q 014860          356 RPVDFITYRTVLDEICR----RGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       356 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~  391 (417)
                         +...+..+...|..    .++.++|.+.|++..+.+.
T Consensus       217 ---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~  253 (273)
T 1ouv_A          217 ---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  253 (273)
T ss_dssp             ---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             ---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence               36677788888888    8999999999999988874

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.56  E-value=1e-12  Score=112.71  Aligned_cols=200  Identities=12%  Similarity=0.027  Sum_probs=161.6

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC
Q 014860          171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI  250 (417)
Q Consensus       171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~  250 (417)
                      ++...+..+...+.+.|++++|+..|++..+.    -+.+...|..+...+.+.|+        +++|+..|++..+.. 
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-   69 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKE----NPQDPEALYWLARTQLKLGL--------VNPALENGKTLVART-   69 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----SSSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-
Confidence            56778899999999999999999999999875    24568889999999999999        999999999998875 


Q ss_pred             CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860          251 EPDIFSLNSMIKGYILS-----------NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK  319 (417)
Q Consensus       251 ~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  319 (417)
                      +-+...+..+-..+.+.           |++++|...|++..+..  +-+...|..+-..+...|++++|...|++..+.
T Consensus        70 P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  147 (217)
T 2pl2_A           70 PRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALAL  147 (217)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence            44677888999999999           99999999999987631  245788899999999999999999999999987


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       320 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      .  .+...+..+..+|...|++++|...|++..+. -+-+...+..+...+.+.|++++|.+.|++...
T Consensus       148 ~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~  213 (217)
T 2pl2_A          148 E--DTPEIRSALAELYLSMGRLDEALAQYAKALEQ-APKDLDLRVRYASALLLKGKAEEAARAAALEHH  213 (217)
T ss_dssp             C--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHTC----------------
T ss_pred             c--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence            7  68899999999999999999999999999886 234677888899999999999999999887654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.56  E-value=3.1e-12  Score=109.43  Aligned_cols=211  Identities=8%  Similarity=-0.051  Sum_probs=171.1

Q ss_pred             CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860          135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY  214 (417)
Q Consensus       135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~  214 (417)
                      .+...+..+...+...|++++|.+.++.+.+...  .+...+..+...|...|++++|.+.|+++.+.    .+.+..+|
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~   79 (225)
T 2vq2_A            6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDP--KNELAWLVRAEIYQYLKVNDKAQESFRQALSI----KPDSAEIN   79 (225)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCc--cchHHHHHHHHHHHHcCChHHHHHHHHHHHHh----CCCChHHH
Confidence            4567778888888999999999999999888654  56788889999999999999999999998875    24467888


Q ss_pred             HHHHHHHHhc-CCccchhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHH
Q 014860          215 NILFTAFLSR-GKNTYINHVYMETIRCLFKQMVNDGIEPD-IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS  292 (417)
Q Consensus       215 ~~li~~~~~~-g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  292 (417)
                      ..+...+... |+        +++|.+.++++.+.+..|+ ...+..+...+...|++++|.+.++.+.+..  +.+...
T Consensus        80 ~~l~~~~~~~~~~--------~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~  149 (225)
T 2vq2_A           80 NNYGWFLCGRLNR--------PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ--PQFPPA  149 (225)
T ss_dssp             HHHHHHHHTTTCC--------HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHH
T ss_pred             HHHHHHHHHhcCc--------HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCchH
Confidence            8899999999 99        9999999999887333343 5678888889999999999999999887632  345788


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 014860          293 YDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITY  363 (417)
Q Consensus       293 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  363 (417)
                      +..+...+...|++++|...++++.+.....+...+..+...+...|+.++|..+++.+.+.  .|+...+
T Consensus       150 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~  218 (225)
T 2vq2_A          150 FKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEEL  218 (225)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHH
Confidence            88899999999999999999999887543247778888888889999999999999988764  3444433

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.55  E-value=1.2e-12  Score=113.76  Aligned_cols=200  Identities=11%  Similarity=0.057  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD  253 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~  253 (417)
                      ..|..+...+.+.|++++|...|+++.+.    .+.+...+..+...+...|+        +++|.+.|++..+.. +.+
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~----~~~~~~~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~-~~~   90 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEE----NKEDAIPYINFANLLSSVNE--------LERALAFYDKALELD-SSA   90 (243)
T ss_dssp             ------------------CCTTHHHHHTT----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHh----CcccHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcC-Ccc
Confidence            34444445555555555555555555442    12234455555555555555        555555555554432 223


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS  333 (417)
Q Consensus       254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~  333 (417)
                      ..++..+...|...|++++|.+.++++.+..  +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus        91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~  167 (243)
T 2q7f_A           91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGM  167 (243)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHH
Confidence            4455555555555555555555555554411  2344455555555556666666666665555432 124555666666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          334 ALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       334 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      .|...|++++|...++++.+.. +.+..++..+...|...|++++|.+.+++..+..
T Consensus       168 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  223 (243)
T 2q7f_A          168 CLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ  223 (243)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence            6666666666666666665541 2345556666666666666666666666666554

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.54  E-value=3.3e-12  Score=118.83  Aligned_cols=255  Identities=9%  Similarity=0.036  Sum_probs=181.5

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC-HHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK-LSRAVYVFKYMKNSRNLECRPSIRSY  214 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~g~~p~~~~~  214 (417)
                      +...|..+...+...|++++|.+.++..++...  .+...|+.+..++.+.|+ +++|+..|++..+.    -+-+...|
T Consensus        96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P--~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l----~P~~~~a~  169 (382)
T 2h6f_A           96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNA--ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKNYQVW  169 (382)
T ss_dssp             HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTCHHHH
T ss_pred             hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCc--cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH----CCCCHHHH
Confidence            345566666777778888888888888877654  567778888888888886 88888888888775    13356778


Q ss_pred             HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH
Q 014860          215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYD  294 (417)
Q Consensus       215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  294 (417)
                      +.+-..+...|+        +++|+..|+++.+.. +-+...|..+-.++.+.|++++|+..++++.+. . +-+...|+
T Consensus       170 ~~~g~~~~~~g~--------~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l-~-P~~~~a~~  238 (382)
T 2h6f_A          170 HHRRVLVEWLRD--------PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-D-VRNNSVWN  238 (382)
T ss_dssp             HHHHHHHHHHTC--------CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-C-TTCHHHHH
T ss_pred             HHHHHHHHHccC--------HHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh-C-CCCHHHHH
Confidence            888888888888        888888888887764 346677777888888888888888888887662 1 24567777


Q ss_pred             HHHHHHHh-cCCHHHH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014860          295 YLIHGLCA-QGRTKNA-----RELCDEMKRKGFVPSSKSYNSLVSALALNG--EVEETVKNLWEMIEKQRPVDFITYRTV  366 (417)
Q Consensus       295 ~li~~~~~-~g~~~~A-----~~l~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~g~~p~~~~~~~l  366 (417)
                      .+..++.. .|..++|     +..+++....... +...|+.+...+...|  +.++|.+.+.++  ...+.+...+..+
T Consensus       239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~--~~~p~~~~al~~L  315 (382)
T 2h6f_A          239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL--QPSHSSPYLIAFL  315 (382)
T ss_dssp             HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH--TTTCCCHHHHHHH
T ss_pred             HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh--ccCCCCHHHHHHH
Confidence            77777777 5554666     4667776664322 5677777777777777  578888888777  2234456677778


Q ss_pred             HHHHHHcC---------CHhHHHHHHHHH-HHCCCCChhhHHHHHHHHHhhcCc
Q 014860          367 LDEICRRG---------RAGEAMKLLKEL-QNKNLIDGYTYTKLLDVLEDDFGN  410 (417)
Q Consensus       367 i~~~~~~g---------~~~~A~~~~~~m-~~~~~p~~~t~~~ll~~~~~~~~~  410 (417)
                      ...|.+.|         ..++|.++|+++ .+.+.....-|..+...+...++.
T Consensus       316 a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~~~~  369 (382)
T 2h6f_A          316 VDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHST  369 (382)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHhcc
Confidence            77887764         257888888888 555444566777777777665443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.53  E-value=1.4e-12  Score=113.29  Aligned_cols=201  Identities=9%  Similarity=0.047  Sum_probs=109.4

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN  215 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~  215 (417)
                      ....|..+...+...|++++|...++.+.+...  .+...+..+...|.+.|++++|.+.|+++.+.    .+.+...|.
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~   95 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENK--EDAIPYINFANLLSSVNELERALAFYDKALEL----DSSAATAYY   95 (243)
T ss_dssp             --------------------CCTTHHHHHTTCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCc--ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCcchHHHH
Confidence            344455555555566666666666666655433  34556666666666666666666666666553    123455566


Q ss_pred             HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 014860          216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDY  295 (417)
Q Consensus       216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~  295 (417)
                      .+...+...|+        +++|.+.++++.+.. +.+...+..+...+.+.|++++|.+.++++.+.  .+.+...+..
T Consensus        96 ~la~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~  164 (243)
T 2q7f_A           96 GAGNVYVVKEM--------YKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQ  164 (243)
T ss_dssp             HHHHHHHHTTC--------HHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHH
T ss_pred             HHHHHHHHhcc--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHH
Confidence            66666666666        666666666665543 334555666666666666666666666665542  1234556666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          296 LIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       296 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      +...+...|++++|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+.
T Consensus       165 l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          165 FGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            6666666666666666666665542 224556666666777777777777777666654

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.53  E-value=1.9e-12  Score=114.65  Aligned_cols=236  Identities=12%  Similarity=-0.046  Sum_probs=188.3

Q ss_pred             HccCChhHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 014860          148 GAAKMYQEMDDVVNQMLATPSFC--GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG  225 (417)
Q Consensus       148 ~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g  225 (417)
                      ...|++++|.+.++.+.+.....  .+..++..+...|...|++++|...|+++.+.    .+.+..+|..+...+...|
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~la~~~~~~~   91 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI----RPDMPEVFNYLGIYLTQAG   91 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHTT
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc----CCCcHHHHHHHHHHHHHcc
Confidence            35688999999999999874321  25678899999999999999999999999986    2446889999999999999


Q ss_pred             CccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC
Q 014860          226 KNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR  305 (417)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~  305 (417)
                      +        +++|.+.|++..+.. +.+..++..+...|.+.|++++|.+.|+.+.+.   .|+.......+..+...|+
T Consensus        92 ~--------~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~  159 (275)
T 1xnf_A           92 N--------FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLD  159 (275)
T ss_dssp             C--------HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHC
T ss_pred             C--------HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcC
Confidence            9        999999999999864 346788999999999999999999999999773   3554455555566677899


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--C-CHHHHHHHHHHHHHcCCHhHHHHH
Q 014860          306 TKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRP--V-DFITYRTVLDEICRRGRAGEAMKL  382 (417)
Q Consensus       306 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~--p-~~~~~~~li~~~~~~g~~~~A~~~  382 (417)
                      +++|...+++..... +++...+. ++..+...++.++|...+.+..+....  | +...|..+...|.+.|++++|...
T Consensus       160 ~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  237 (275)
T 1xnf_A          160 EKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL  237 (275)
T ss_dssp             HHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999998877653 33444444 777788889999999999988765211  1 146788899999999999999999


Q ss_pred             HHHHHHCCCCChhhHHHHH
Q 014860          383 LKELQNKNLIDGYTYTKLL  401 (417)
Q Consensus       383 ~~~m~~~~~p~~~t~~~ll  401 (417)
                      |++....+..+...+...+
T Consensus       238 ~~~al~~~p~~~~~~~~~~  256 (275)
T 1xnf_A          238 FKLAVANNVHNFVEHRYAL  256 (275)
T ss_dssp             HHHHHTTCCTTCHHHHHHH
T ss_pred             HHHHHhCCchhHHHHHHHH
Confidence            9999987643555554333

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.48  E-value=1.6e-11  Score=108.56  Aligned_cols=247  Identities=9%  Similarity=0.042  Sum_probs=193.1

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC-CCHHHHHHHHHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC-GTEALYNTIIYF  182 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~  182 (417)
                      +-.....+...|+++.|+..|+.+.+..  +.+...+..+...+...|++++|.+.++...+.+... .....|..+...
T Consensus         6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            6 EFRYADFLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            4455677789999999999999997654  3456688888899999999999999999999854221 124458999999


Q ss_pred             HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK  262 (417)
Q Consensus       183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  262 (417)
                      |.+.|++++|++.|++..+.    .+.+..+|..+...+...|+        +++|.+.|++..+.. +.+..++..+..
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~-~~~~~~~~~l~~  150 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDR----DTTRLDMYGQIGSYFYNKGN--------FPLAIQYMEKQIRPT-TTDPKVFYELGQ  150 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH----STTCTHHHHHHHHHHHHTTC--------HHHHHHHHGGGCCSS-CCCHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhc----CcccHHHHHHHHHHHHHccC--------HHHHHHHHHHHhhcC-CCcHHHHHHHHH
Confidence            99999999999999999885    23456889999999999999        999999999988763 445667776663


Q ss_pred             HHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HHHHHHHH
Q 014860          263 GYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR---TKNARELCDEMKRKG-FVPS------SKSYNSLV  332 (417)
Q Consensus       263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g-~~p~------~~~~~~li  332 (417)
                      .+...+++++|.+.|+...+..  +.+...+..+...+...|+   +++|...+++..+.. -.|+      ..+|..+.
T Consensus       151 ~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~  228 (272)
T 3u4t_A          151 AYYYNKEYVKADSSFVKVLELK--PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIA  228 (272)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHH
Confidence            4445569999999999997732  2346778888888888888   888888888877541 1233      25788899


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014860          333 SALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLD  368 (417)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  368 (417)
                      ..|...|++++|.+.|++..+.. +-+...+..+-.
T Consensus       229 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~  263 (272)
T 3u4t_A          229 YYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM  263 (272)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence            99999999999999999999862 234444444433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.48  E-value=1.4e-10  Score=102.70  Aligned_cols=220  Identities=8%  Similarity=-0.053  Sum_probs=192.5

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHcCCCCCCCHHHHHHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGA----AKMYQEMDDVVNQMLATPSFCGTEALYNTI  179 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l  179 (417)
                      +..+...+...+++++|++.|+...+    +-+...+..+...+..    .+++++|.+.+++..+.+    +...+..+
T Consensus         9 ~~~lg~~~~~~~~~~~A~~~~~~a~~----~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~l   80 (273)
T 1ouv_A            9 LVGLGAKSYKEKDFTQAKKYFEKACD----LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHLL   80 (273)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHH----CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHHH
Confidence            44566677888999999999999975    3467888888899999    999999999999999874    67889999


Q ss_pred             HHHHHH----hCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHh----cCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860          180 IYFFAE----ARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS----RGKNTYINHVYMETIRCLFKQMVNDGIE  251 (417)
Q Consensus       180 i~~~~~----~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~~~~~~~~~a~~~~~~m~~~g~~  251 (417)
                      ...|..    .+++++|+..|++..+.   +   +..++..+-..|..    .++        .++|++.|++..+.+  
T Consensus        81 g~~~~~g~~~~~~~~~A~~~~~~a~~~---~---~~~a~~~lg~~~~~~~~~~~~--------~~~A~~~~~~a~~~~--  144 (273)
T 1ouv_A           81 GNLYYSGQGVSQNTNKALQYYSKACDL---K---YAEGCASLGGIYHDGKVVTRD--------FKKAVEYFTKACDLN--  144 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHCSSSCCC--------HHHHHHHHHHHHHTT--
T ss_pred             HHHHhCCCCcccCHHHHHHHHHHHHHc---C---CccHHHHHHHHHHcCCCcccC--------HHHHHHHHHHHHhcC--
Confidence            999999    99999999999999986   2   78889999999999    899        999999999999876  


Q ss_pred             CCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCC
Q 014860          252 PDIFSLNSMIKGYIL----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNARELCDEMKRKGFVP  323 (417)
Q Consensus       252 p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p  323 (417)
                       +...+..+-..|..    .+++++|.+.|+...+ .   .+...+..+...|..    .+++++|...|++..+.+   
T Consensus       145 -~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---  216 (273)
T 1ouv_A          145 -DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---  216 (273)
T ss_dssp             -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---
T ss_pred             -cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---
Confidence             56777888888888    9999999999999887 3   356788888899999    999999999999999875   


Q ss_pred             CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 014860          324 SSKSYNSLVSALAL----NGEVEETVKNLWEMIEKQ  355 (417)
Q Consensus       324 ~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  355 (417)
                      +...+..+-..|.+    .++.++|.+.|++..+.|
T Consensus       217 ~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          217 NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            37788888899998    999999999999998875

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.47  E-value=1.9e-11  Score=113.72  Aligned_cols=246  Identities=11%  Similarity=0.000  Sum_probs=201.3

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCC-hhHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKM-YQEMDDVVNQMLATPSFCGTEALYNTIIYF  182 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~~li~~  182 (417)
                      |..+..++...|++++|++.|+.+.+..  +-+...|..+..++...|+ +++|.+.+++..+...  .+...|+.+..+
T Consensus       100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P--~~~~a~~~~g~~  175 (382)
T 2h6f_A          100 YDYFRAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC--CCHHHHHHHHHH
Confidence            5566777788999999999999997654  5678999999999999997 9999999999999775  678999999999


Q ss_pred             HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK  262 (417)
Q Consensus       183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  262 (417)
                      +.+.|++++|+..|+++.+..    +-+...|..+..++...|+        +++|++.|+++.+.. +-+...|+.+-.
T Consensus       176 ~~~~g~~~eAl~~~~kal~ld----P~~~~a~~~lg~~~~~~g~--------~~eAl~~~~~al~l~-P~~~~a~~~lg~  242 (382)
T 2h6f_A          176 VEWLRDPSQELEFIADILNQD----AKNYHAWQHRQWVIQEFKL--------WDNELQYVDQLLKED-VRNNSVWNQRYF  242 (382)
T ss_dssp             HHHHTCCTTHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHccCHHHHHHHHHHHHHhC----ccCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            999999999999999999862    4478899999999999999        999999999999875 447889999999


Q ss_pred             HHHh-cCCHHHH-----HHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860          263 GYIL-SNHVNDA-----LRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG--RTKNARELCDEMKRKGFVPSSKSYNSLVSA  334 (417)
Q Consensus       263 ~~~~-~g~~~~a-----~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~~~~~li~~  334 (417)
                      ++.+ .|..++|     .+.|++.....  +-+...|+.+...+...|  ++++|.+.+.++ +. ...+...+..+..+
T Consensus       243 ~l~~l~~~~~eA~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~  318 (382)
T 2h6f_A          243 VISNTTGYNDRAVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDI  318 (382)
T ss_dssp             HHHHTTCSCSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHH
T ss_pred             HHHHhcCcchHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHH
Confidence            9998 6665777     47777776521  346778999998899888  689999999998 33 34467888999999


Q ss_pred             HHhcC---------CHHHHHHHHHHH-HHcCCCCC-HHHHHHHHHHHHH
Q 014860          335 LALNG---------EVEETVKNLWEM-IEKQRPVD-FITYRTVLDEICR  372 (417)
Q Consensus       335 ~~~~g---------~~~~A~~~~~~m-~~~g~~p~-~~~~~~li~~~~~  372 (417)
                      |.+.|         ..++|.++++++ .+.  .|. ...|..+...+..
T Consensus       319 ~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          319 YEDMLENQCDNKEDILNKALELCEILAKEK--DTIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHTTCSSHHHHHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHHH
T ss_pred             HHHHhcccccchHHHHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHH
Confidence            98874         358999999998 543  344 3456666555543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.44  E-value=3.1e-09  Score=102.63  Aligned_cols=256  Identities=12%  Similarity=0.009  Sum_probs=145.7

Q ss_pred             CCCCHHHHHHHHhc----cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHcCCCCCC
Q 014860          100 PRFNNEELCNVMTL----QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGA----AKMYQEMDDVVNQMLATPSFCG  171 (417)
Q Consensus       100 ~~~~~~~ll~~l~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~  171 (417)
                      +...+..+...+..    .+++++|++.|+...+.    -+...+..+...+..    .+++++|.+.++...+.+    
T Consensus        74 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----  145 (490)
T 2xm6_A           74 YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG----  145 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence            33345555555655    67777787777777543    255666666666666    667777777777776653    


Q ss_pred             CHHHHHHHHHHHHH----hCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHh----cCCccchhhhhHHHHHHHHH
Q 014860          172 TEALYNTIIYFFAE----ARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS----RGKNTYINHVYMETIRCLFK  243 (417)
Q Consensus       172 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~~~~~~~~~a~~~~~  243 (417)
                      +...+..|...|..    .+++++|++.|++..+.   |   +...+..+-..|..    .++        .++|.+.|+
T Consensus       146 ~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~~--------~~~A~~~~~  211 (490)
T 2xm6_A          146 RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ---G---NVWSCNQLGYMYSRGLGVERN--------DAISAQWYR  211 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCC--------HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHhcCCCCCcC--------HHHHHHHHH
Confidence            44566666666666    56777777777777664   2   55666666666665    556        667777776


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 014860          244 QMVNDGIEPDIFSLNSMIKGYIL----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNARELCDE  315 (417)
Q Consensus       244 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~  315 (417)
                      +..+.|   +...+..+-..|..    .+++++|.+.|+...+ .   .+...+..+-..|..    .++.++|..+|++
T Consensus       212 ~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~  284 (490)
T 2xm6_A          212 KSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAE-Q---GNSIAQFRLGYILEQGLAGAKEPLKALEWYRK  284 (490)
T ss_dssp             HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHT-T---TCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Confidence            666554   34455555555554    5566666666666554 1   233444444444444    5555556655555


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHhHHHHHHHHHH
Q 014860          316 MKRKGFVPSSKSYNSLVSALALN-----GEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRG---RAGEAMKLLKELQ  387 (417)
Q Consensus       316 m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~  387 (417)
                      ..+.|   +...+..|-..|...     ++.++|..+|++..+.|   +...+..+-..|...|   +.++|.+.|++..
T Consensus       285 a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~  358 (490)
T 2xm6_A          285 SAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAA  358 (490)
T ss_dssp             HHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHH
T ss_pred             HHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHH
Confidence            55443   334444444555444     55555555555555443   2333444444444333   4444555554444


Q ss_pred             HCC
Q 014860          388 NKN  390 (417)
Q Consensus       388 ~~~  390 (417)
                      +.+
T Consensus       359 ~~~  361 (490)
T 2xm6_A          359 AKG  361 (490)
T ss_dssp             HTT
T ss_pred             HCC
Confidence            443

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.43  E-value=4.3e-09  Score=101.61  Aligned_cols=270  Identities=10%  Similarity=0.034  Sum_probs=221.6

Q ss_pred             CCCCHHHHHHHHhc----cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHcCCCCCC
Q 014860          100 PRFNNEELCNVMTL----QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGA----AKMYQEMDDVVNQMLATPSFCG  171 (417)
Q Consensus       100 ~~~~~~~ll~~l~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~  171 (417)
                      +......+...+..    .++++.|++.|+...+.    -+...+..+...+..    .+++++|.+.++...+.+    
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----  109 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG----  109 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----
Confidence            33344555566655    78999999999998754    367888888888888    899999999999998864    


Q ss_pred             CHHHHHHHHHHHHH----hCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHh----cCCccchhhhhHHHHHHHHH
Q 014860          172 TEALYNTIIYFFAE----ARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS----RGKNTYINHVYMETIRCLFK  243 (417)
Q Consensus       172 ~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~----~g~~~~~~~~~~~~a~~~~~  243 (417)
                      +...+..|...|..    .+++++|++.|++..+.   |   +...+..+-..|..    .++        .++|.+.|+
T Consensus       110 ~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~---~---~~~a~~~Lg~~y~~g~g~~~d--------~~~A~~~~~  175 (490)
T 2xm6_A          110 LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ---G---RDSGQQSMGDAYFEGDGVTRD--------YVMAREWYS  175 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHTSSSCCC--------HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC---C---CHHHHHHHHHHHHcCCCCCCC--------HHHHHHHHH
Confidence            56778888899988    78999999999999886   2   57778888888887    677        999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHH
Q 014860          244 QMVNDGIEPDIFSLNSMIKGYIL----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNARELCDE  315 (417)
Q Consensus       244 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~  315 (417)
                      +..+.|   +...+..+-..|..    .++.++|.+.|+...+ .   .+...+..+...|..    .+++++|..+|++
T Consensus       176 ~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~-~---~~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~  248 (490)
T 2xm6_A          176 KAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSAT-S---GDELGQLHLADMYYFGIGVTQDYTQSRVLFSQ  248 (490)
T ss_dssp             HHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred             HHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence            999875   67788888888887    8999999999999887 3   466778888888876    8899999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHhHHHHHHHHH
Q 014860          316 MKRKGFVPSSKSYNSLVSALAL----NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR-----GRAGEAMKLLKEL  386 (417)
Q Consensus       316 m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----g~~~~A~~~~~~m  386 (417)
                      ..+.|   +...+..+-..|..    .++.++|.++|++..+.|   +...+..|-..|...     ++.++|...|++.
T Consensus       249 a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a  322 (490)
T 2xm6_A          249 SAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKS  322 (490)
T ss_dssp             HHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHH
T ss_pred             HHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence            98875   56777788888888    899999999999998775   566777888888887     8999999999999


Q ss_pred             HHCCCCChhhHHHHHHHHHh
Q 014860          387 QNKNLIDGYTYTKLLDVLED  406 (417)
Q Consensus       387 ~~~~~p~~~t~~~ll~~~~~  406 (417)
                      .+.+  +...+..+-..+.+
T Consensus       323 ~~~~--~~~a~~~lg~~y~~  340 (490)
T 2xm6_A          323 AEQG--DATAQANLGAIYFR  340 (490)
T ss_dssp             HHTT--CHHHHHHHHHHHHH
T ss_pred             HhcC--CHHHHHHHHHHHHh
Confidence            9987  44455555444443

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.42  E-value=1.9e-10  Score=104.02  Aligned_cols=217  Identities=12%  Similarity=0.065  Sum_probs=126.3

Q ss_pred             hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH-------ccCCh-------hHHHHHHHHHHcC-CCCCCCHHHHHHHHHH
Q 014860          118 LVCLELFNWASKQPRFRHDASTYHIMTRKLG-------AAKMY-------QEMDDVVNQMLAT-PSFCGTEALYNTIIYF  182 (417)
Q Consensus       118 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~-------~~~~~-------~~a~~~~~~m~~~-~~~~~~~~~~~~li~~  182 (417)
                      +.|+.+|+.+.+..  +.+...|......+.       +.|++       ++|..++++..+. ..  .+...|..++..
T Consensus        33 ~~a~~~~~~al~~~--p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p--~~~~~~~~~~~~  108 (308)
T 2ond_A           33 KRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK--KNMLLYFAYADY  108 (308)
T ss_dssp             HHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT--TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc--ccHHHHHHHHHH
Confidence            46666666665433  446666666665554       24664       6677777777663 32  355566667777


Q ss_pred             HHHhCCHHHHHHHHHHhHhCCCCCCCCC-HH-HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860          183 FAEARKLSRAVYVFKYMKNSRNLECRPS-IR-SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM  260 (417)
Q Consensus       183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~~-~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  260 (417)
                      +.+.|++++|.++|++..+.     .|+ .. .|..+...+.+.|+        +++|.++|++..+.. +.+...|...
T Consensus       109 ~~~~~~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~a~~~~-p~~~~~~~~~  174 (308)
T 2ond_A          109 EESRMKYEKVHSIYNRLLAI-----EDIDPTLVYIQYMKFARRAEG--------IKSGRMIFKKAREDA-RTRHHVYVTA  174 (308)
T ss_dssp             HHHTTCHHHHHHHHHHHHTS-----SSSCTHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTST-TCCTHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHHHhc-----cccCccHHHHHHHHHHHHhcC--------HHHHHHHHHHHHhcC-CCCHHHHHHH
Confidence            77777777777777776654     332 22 56666666666666        677777777666543 2233333322


Q ss_pred             HHHH-HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--CHHHHHHHHHHHH
Q 014860          261 IKGY-ILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG-FVP--SSKSYNSLVSALA  336 (417)
Q Consensus       261 i~~~-~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p--~~~~~~~li~~~~  336 (417)
                      .... ...|+.++|.++|+...+..  +.+...|..++..+.+.|++++|..+|++..... +.|  ....|..++..+.
T Consensus       175 a~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~  252 (308)
T 2ond_A          175 ALMEYYCSKDKSVAFKIFELGLKKY--GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES  252 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            2221 12466666666666665421  2345566666666666666666666666666542 233  3455666666666


Q ss_pred             hcCCHHHHHHHHHHHHHc
Q 014860          337 LNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       337 ~~g~~~~A~~~~~~m~~~  354 (417)
                      +.|+.++|..+++++.+.
T Consensus       253 ~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          253 NIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHSCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            666666666666666554

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.40  E-value=7.5e-10  Score=100.11  Aligned_cols=219  Identities=11%  Similarity=-0.001  Sum_probs=178.3

Q ss_pred             hHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHhHhCCCCCCCC-CHHHHHHHH
Q 014860          154 QEMDDVVNQMLATPSFCGTEALYNTIIYFFAE-------ARKL-------SRAVYVFKYMKNSRNLECRP-SIRSYNILF  218 (417)
Q Consensus       154 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~-------~g~~-------~~a~~~~~~m~~~~~~g~~p-~~~~~~~li  218 (417)
                      ++|..+|++..+..+  .+...|..++..+..       .|++       ++|..+|++..+.    +.| +...|..+.
T Consensus        33 ~~a~~~~~~al~~~p--~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~----~~p~~~~~~~~~~  106 (308)
T 2ond_A           33 KRVMFAYEQCLLVLG--HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAIST----LLKKNMLLYFAYA  106 (308)
T ss_dssp             HHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTT----TTTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHH----hCcccHHHHHHHH
Confidence            678889999988654  678888888888764       5886       9999999999972    244 567899999


Q ss_pred             HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC-HH-HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHH
Q 014860          219 TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD-IF-SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYL  296 (417)
Q Consensus       219 ~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~l  296 (417)
                      ..+...|+        +++|.++|++..+.  .|+ .. +|..+...+.+.|++++|..+|++..+. . +.+...|...
T Consensus       107 ~~~~~~~~--------~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~-~-p~~~~~~~~~  174 (308)
T 2ond_A          107 DYEESRMK--------YEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED-A-RTRHHVYVTA  174 (308)
T ss_dssp             HHHHHTTC--------HHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS-T-TCCTHHHHHH
T ss_pred             HHHHhcCC--------HHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-C-CCCHHHHHHH
Confidence            99999999        99999999999985  454 33 8999999999999999999999999762 2 2344455444


Q ss_pred             HHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHH
Q 014860          297 IHGLC-AQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQ-RPV--DFITYRTVLDEICR  372 (417)
Q Consensus       297 i~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~~~~~li~~~~~  372 (417)
                      ..... ..|++++|..+|++..+.. +-+...|..++..+.+.|+.++|..+|++..+.. +.|  ....|..++..+.+
T Consensus       175 a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~  253 (308)
T 2ond_A          175 ALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESN  253 (308)
T ss_dssp             HHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHH
Confidence            33322 3699999999999988753 2368889999999999999999999999999863 455  46788999999999


Q ss_pred             cCCHhHHHHHHHHHHHCCC
Q 014860          373 RGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       373 ~g~~~~A~~~~~~m~~~~~  391 (417)
                      .|+.++|..+++++.+...
T Consensus       254 ~g~~~~a~~~~~~a~~~~p  272 (308)
T 2ond_A          254 IGDLASILKVEKRRFTAFR  272 (308)
T ss_dssp             HSCHHHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHHHcc
Confidence            9999999999999988654

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.40  E-value=1.6e-11  Score=115.52  Aligned_cols=282  Identities=11%  Similarity=0.022  Sum_probs=204.7

Q ss_pred             HHHHHHhccCChhHHHHHHHHhhcCCCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHHcC----CCCCCCHHHHH
Q 014860          106 ELCNVMTLQEDPLVCLELFNWASKQPRFRHDA----STYHIMTRKLGAAKMYQEMDDVVNQMLAT----PSFCGTEALYN  177 (417)
Q Consensus       106 ~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~  177 (417)
                      .+...+...|++++|+..|+.+.+..  +.+.    ..+..+...+...|++++|.+.+++..+.    +.......++.
T Consensus        53 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  130 (411)
T 4a1s_A           53 LEGERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSG  130 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHH
Confidence            45566788999999999999997653  2343    57888888999999999999999988764    11113457888


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhHhCCC-CC-CCCCHHHHHHHHHHHHhcCC----------ccchhhhhHHHHHHHHHHH
Q 014860          178 TIIYFFAEARKLSRAVYVFKYMKNSRN-LE-CRPSIRSYNILFTAFLSRGK----------NTYINHVYMETIRCLFKQM  245 (417)
Q Consensus       178 ~li~~~~~~g~~~~a~~~~~~m~~~~~-~g-~~p~~~~~~~li~~~~~~g~----------~~~~~~~~~~~a~~~~~~m  245 (417)
                      .+...|...|++++|...|++..+... .+ ......++..+...|...|+          ...... .+++|++.+++.
T Consensus       131 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~-~~~~A~~~~~~a  209 (411)
T 4a1s_A          131 NLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKE-ALTRAVEFYQEN  209 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhH-HHHHHHHHHHHH
Confidence            999999999999999999998765300 00 11234567777778877775          111111 156677776665


Q ss_pred             HHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860          246 VND----GI-EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN----SFSYDYLIHGLCAQGRTKNARELCDEM  316 (417)
Q Consensus       246 ~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m  316 (417)
                      .+.    +- .....++..+...|...|++++|.+.+++..+...-..+    ...+..+...|...|++++|...+++.
T Consensus       210 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  289 (411)
T 4a1s_A          210 LKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRT  289 (411)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            431    11 122357788889999999999999999987552111122    337888999999999999999999887


Q ss_pred             HHCCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860          317 KRKGF--V---PSSKSYNSLVSALALNGEVEETVKNLWEMIEK----QRPV-DFITYRTVLDEICRRGRAGEAMKLLKEL  386 (417)
Q Consensus       317 ~~~g~--~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m  386 (417)
                      .+...  .   ....++..+...|...|++++|..++++..+.    +..+ ...++..+...|...|+.++|.+.+++.
T Consensus       290 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  369 (411)
T 4a1s_A          290 LALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQH  369 (411)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence            75311  1   11567888999999999999999999988764    1111 1347788889999999999999999998


Q ss_pred             HHCC
Q 014860          387 QNKN  390 (417)
Q Consensus       387 ~~~~  390 (417)
                      .+..
T Consensus       370 l~~~  373 (411)
T 4a1s_A          370 LQLA  373 (411)
T ss_dssp             HHHC
T ss_pred             HHHH
Confidence            7753

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.39  E-value=2.9e-11  Score=113.21  Aligned_cols=298  Identities=11%  Similarity=0.028  Sum_probs=210.5

Q ss_pred             HHHHHHHhccCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHcC----CCCCCCHHHH
Q 014860          105 EELCNVMTLQEDPLVCLELFNWASKQPRFRHD----ASTYHIMTRKLGAAKMYQEMDDVVNQMLAT----PSFCGTEALY  176 (417)
Q Consensus       105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~  176 (417)
                      ......+...|++++|+..|+.+.+..  +.+    ...+..+...+...|++++|...++.....    +..+....++
T Consensus        13 ~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   90 (406)
T 3sf4_A           13 ALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   90 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence            345566788999999999999987653  233    367888888999999999999999887653    2111235678


Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HHHHHHHHHHHHhcCC-------------ccchhhhhHHHHH
Q 014860          177 NTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IRSYNILFTAFLSRGK-------------NTYINHVYMETIR  239 (417)
Q Consensus       177 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~~~~~li~~~~~~g~-------------~~~~~~~~~~~a~  239 (417)
                      ..+...|...|++++|...|++..+..  .-.++    ..++..+...+...|+             ...+. ..+++|.
T Consensus        91 ~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~-~~~~~A~  167 (406)
T 3sf4_A           91 GNLGNTLKVLGNFDEAIVCCQRHLDIS--RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR-DALQAAV  167 (406)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH--HHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHH-HHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHH--HhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHH-HHHHHHH
Confidence            889999999999999999999876531  00112    3467777777777765             11111 1156677


Q ss_pred             HHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC----HHHHHHHHHHHHhcCCHHHHH
Q 014860          240 CLFKQMVN----DGIEP-DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN----SFSYDYLIHGLCAQGRTKNAR  310 (417)
Q Consensus       240 ~~~~~m~~----~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~  310 (417)
                      +.+++..+    .+..+ ...++..+...|...|++++|.+.+++..+...-.++    ..++..+...|...|++++|.
T Consensus       168 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  247 (406)
T 3sf4_A          168 DFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS  247 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHH
Confidence            77666543    22111 2357788889999999999999999987642111122    347888899999999999999


Q ss_pred             HHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHhHHH
Q 014860          311 ELCDEMKRK----GFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIEKQR-PVD----FITYRTVLDEICRRGRAGEAM  380 (417)
Q Consensus       311 ~l~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~  380 (417)
                      ..+++..+.    +..+. ..++..+...|...|++++|...+++..+..- ..+    ..++..+...|...|++++|.
T Consensus       248 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  327 (406)
T 3sf4_A          248 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAM  327 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            999987643    11111 56788899999999999999999998876411 112    457788888999999999999


Q ss_pred             HHHHHHHHC----CC-C-ChhhHHHHHHHHHhh
Q 014860          381 KLLKELQNK----NL-I-DGYTYTKLLDVLEDD  407 (417)
Q Consensus       381 ~~~~~m~~~----~~-p-~~~t~~~ll~~~~~~  407 (417)
                      +.+++..+.    +- + ...++..+-..+...
T Consensus       328 ~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~  360 (406)
T 3sf4_A          328 HFAEKHLEISREVGDKSGELTARLNLSDLQMVL  360 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHh
Confidence            999987654    22 1 244555555555444

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.39  E-value=2.3e-11  Score=110.42  Aligned_cols=278  Identities=12%  Similarity=0.064  Sum_probs=201.3

Q ss_pred             HHHHHhccCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHcC----CCCCCCHHHHHH
Q 014860          107 LCNVMTLQEDPLVCLELFNWASKQPRFRHD----ASTYHIMTRKLGAAKMYQEMDDVVNQMLAT----PSFCGTEALYNT  178 (417)
Q Consensus       107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~~  178 (417)
                      ....+...|++++|+..|+.+.+..  +.+    ...+..+...+...|++++|.+.++...+.    +..+....++..
T Consensus        11 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~   88 (338)
T 3ro2_A           11 EGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGN   88 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHH
Confidence            4556678999999999999987653  233    467888889999999999999999887653    111123567888


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HHHHHHHHHHHHhcCC-------------ccchhhhhHHHHHHH
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IRSYNILFTAFLSRGK-------------NTYINHVYMETIRCL  241 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~~~~~li~~~~~~g~-------------~~~~~~~~~~~a~~~  241 (417)
                      +...|...|++++|...|++..+..  .-.++    ..++..+...+...|+             ..... ..+++|.+.
T Consensus        89 l~~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~-~~~~~A~~~  165 (338)
T 3ro2_A           89 LGNTLKVLGNFDEAIVCCQRHLDIS--RELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVR-NALQAAVDL  165 (338)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHH--HHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHH-HHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHH--HHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHH-HHHHHHHHH
Confidence            9999999999999999999876531  00112    3467777777777765             11111 115677777


Q ss_pred             HHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 014860          242 FKQMVND----GI-EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP----NSFSYDYLIHGLCAQGRTKNAREL  312 (417)
Q Consensus       242 ~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l  312 (417)
                      +++..+.    +. .....++..+...+...|++++|.+.+++..+...-.+    ...++..+...+...|++++|...
T Consensus       166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  245 (338)
T 3ro2_A          166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY  245 (338)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            7665431    11 11245778888899999999999999998754211112    234788888999999999999999


Q ss_pred             HHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHH
Q 014860          313 CDEMKRKGF-VPS----SKSYNSLVSALALNGEVEETVKNLWEMIEK----QRPV-DFITYRTVLDEICRRGRAGEAMKL  382 (417)
Q Consensus       313 ~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~  382 (417)
                      +++..+... ..+    ..++..+...|...|++++|...+++..+.    +..+ ...++..+...|...|++++|...
T Consensus       246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  325 (338)
T 3ro2_A          246 YKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHF  325 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence            998764311 112    567888899999999999999999988764    1111 134677888999999999999999


Q ss_pred             HHHHHHC
Q 014860          383 LKELQNK  389 (417)
Q Consensus       383 ~~~m~~~  389 (417)
                      +++..+.
T Consensus       326 ~~~a~~~  332 (338)
T 3ro2_A          326 AEKHLEI  332 (338)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            9998775

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.38  E-value=4.1e-11  Score=115.25  Aligned_cols=216  Identities=11%  Similarity=-0.047  Sum_probs=179.1

Q ss_pred             hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCh-hHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Q 014860          117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMY-QEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYV  195 (417)
Q Consensus       117 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~  195 (417)
                      .+.++..++......  +.+...+..+...+...|++ ++|.+.+++..+...  .+...|..+..+|.+.|++++|.+.
T Consensus        84 ~~~al~~l~~~~~~~--~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~g~~~~A~~~  159 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA--QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP--ELVEAWNQLGEVYWKKGDVTSAHTC  159 (474)
T ss_dssp             HHHHHHHHHHHHTTC--CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHhccC--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC--CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            667777787765433  46889999999999999999 999999999998764  5688999999999999999999999


Q ss_pred             HHHhHhCCCCCCCCCHHHHHHHHHHHHhc---------CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860          196 FKYMKNSRNLECRPSIRSYNILFTAFLSR---------GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL  266 (417)
Q Consensus       196 ~~~m~~~~~~g~~p~~~~~~~li~~~~~~---------g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  266 (417)
                      |++..+.     .|+...|..+...+...         |+        +++|++.|++..+.. +-+...|..+..+|..
T Consensus       160 ~~~al~~-----~p~~~~~~~lg~~~~~~~~~~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~  225 (474)
T 4abn_A          160 FSGALTH-----CKNKVSLQNLSMVLRQLQTDSGDEHSRH--------VMDSVRQAKLAVQMD-VLDGRSWYILGNAYLS  225 (474)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHTTCCCSCHHHHHHH--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHHHHhh-----CCCHHHHHHHHHHHHHhccCChhhhhhh--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            9999976     57788899999999998         88        999999999998865 4467888889999988


Q ss_pred             c--------CCHHHHHHHHHHhhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860          267 S--------NHVNDALRIFHQMGVVYN-YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALAL  337 (417)
Q Consensus       267 ~--------g~~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~  337 (417)
                      .        |++++|.+.|++..+... ...+...|..+..+|...|++++|.+.|++..+... -+...+..+..++..
T Consensus       226 ~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~  304 (474)
T 4abn_A          226 LYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEF  304 (474)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence            8        889999999998876310 003778888899999999999999999998887532 256678888888888


Q ss_pred             cCCHHHHHHHHHHH
Q 014860          338 NGEVEETVKNLWEM  351 (417)
Q Consensus       338 ~g~~~~A~~~~~~m  351 (417)
                      .|++++|.+.+.++
T Consensus       305 lg~~~eAi~~~~~~  318 (474)
T 4abn_A          305 LSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHhccc
Confidence            88888887755443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.36  E-value=4.4e-09  Score=102.58  Aligned_cols=164  Identities=7%  Similarity=0.031  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860          237 TIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN--SFSYDYLIHGLCAQGRTKNARELCD  314 (417)
Q Consensus       237 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~  314 (417)
                      +|.++|++..+.-.+-+...|..+...+.+.|++++|..+|+...+.   .|+  ...|...+..+.+.|++++|.++|+
T Consensus       304 ~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~  380 (530)
T 2ooe_A          304 EAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFK  380 (530)
T ss_dssp             HHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            78888888775222345888999999999999999999999999872   343  3589999999999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCC
Q 014860          315 EMKRKGFVPSSKSYNSLVSA-LALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLID  393 (417)
Q Consensus       315 ~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~  393 (417)
                      +..+... .+...|...... +...|+.++|..+|++..+. .+-+...|..++..+.+.|+.++|..+|++....+..+
T Consensus       381 ~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~-~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~  458 (530)
T 2ooe_A          381 KAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  458 (530)
T ss_dssp             HHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSC
T ss_pred             HHHhccC-CchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCC
Confidence            9987632 233334332222 34689999999999998876 23467889999999999999999999999999875422


Q ss_pred             ----hhhHHHHHHHHH
Q 014860          394 ----GYTYTKLLDVLE  405 (417)
Q Consensus       394 ----~~t~~~ll~~~~  405 (417)
                          ...|...++-..
T Consensus       459 ~~~~~~lw~~~~~~e~  474 (530)
T 2ooe_A          459 PEKSGEIWARFLAFES  474 (530)
T ss_dssp             GGGCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence                235666565433

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.35  E-value=3.4e-09  Score=103.42  Aligned_cols=124  Identities=10%  Similarity=0.049  Sum_probs=91.4

Q ss_pred             HHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860           91 FRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF  169 (417)
Q Consensus        91 ~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  169 (417)
                      +.+.+...|... .|..++. +...|+++.|..+|+.+.+..  +.+...|...+..+.+.|++++|.++|++..+..  
T Consensus         2 le~al~~~P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~--P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--   76 (530)
T 2ooe_A            2 AEKKLEENPYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF--PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--   76 (530)
T ss_dssp             HHHHHHHCTTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--
T ss_pred             hhhHhhhCCCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--
Confidence            345666666554 5677777 467899999999999997654  6788999999999999999999999999998875  


Q ss_pred             CCCHHHHHHHHHHH-HHhCCHHHHHH----HHHHhHhCCCCCCC-CCHHHHHHHHHHHH
Q 014860          170 CGTEALYNTIIYFF-AEARKLSRAVY----VFKYMKNSRNLECR-PSIRSYNILFTAFL  222 (417)
Q Consensus       170 ~~~~~~~~~li~~~-~~~g~~~~a~~----~~~~m~~~~~~g~~-p~~~~~~~li~~~~  222 (417)
                       |+...|...+... ...|+++.|.+    +|+.....-  |.. ++...|...+....
T Consensus        77 -p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~--g~~~~~~~~w~~~~~~~~  132 (530)
T 2ooe_A           77 -LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKI--GMEIMSYQIWVDYINFLK  132 (530)
T ss_dssp             -CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHT--TTSTTCHHHHHHHHHHHH
T ss_pred             -CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHh
Confidence             6777888777533 45677776654    777765531  333 34666776665543

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=6.7e-11  Score=106.44  Aligned_cols=209  Identities=14%  Similarity=0.078  Sum_probs=162.7

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCC----CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860          172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSR----NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN  247 (417)
Q Consensus       172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~  247 (417)
                      +..++..+...|...|++++|..+|+++.+..    +...+....++..+...+...|+        +++|...+++..+
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~   97 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--------YKDAANLLNDALA   97 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHH
Confidence            45678888889999999999999999887620    00112346678899999999999        9999999988875


Q ss_pred             C------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860          248 D------GI-EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY-----NY-LPNSFSYDYLIHGLCAQGRTKNARELCD  314 (417)
Q Consensus       248 ~------g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~  314 (417)
                      .      +- +....++..+...|...|++++|.+.+++..+..     +- ......+..+...+...|++++|.+.++
T Consensus        98 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~  177 (311)
T 3nf1_A           98 IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQ  177 (311)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            3      22 2345678889999999999999999999887631     22 2345678888999999999999999999


Q ss_pred             HHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---------------------------------
Q 014860          315 EMKRK------GFVP-SSKSYNSLVSALALNGEVEETVKNLWEMIEK---------------------------------  354 (417)
Q Consensus       315 ~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---------------------------------  354 (417)
                      ++.+.      +..| ...++..+..+|...|++++|.++++++.+.                                 
T Consensus       178 ~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (311)
T 3nf1_A          178 RALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDG  257 (311)
T ss_dssp             HHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhH
Confidence            98764      2223 2457888999999999999999999998863                                 


Q ss_pred             ---------------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          355 ---------------QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       355 ---------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                                     ..+.+..++..+...|.+.|++++|.+.|++..+
T Consensus       258 ~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          258 TSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence                           0122345678888899999999999999988765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.33  E-value=4.9e-11  Score=107.34  Aligned_cols=212  Identities=14%  Similarity=0.114  Sum_probs=164.4

Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcC-------CCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCC--
Q 014860          134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT-------PSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRN--  204 (417)
Q Consensus       134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--  204 (417)
                      +.+..++..+...+...|++++|..+++.+.+.       ... ....++..+...|...|++++|...|++..+...  
T Consensus        24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  102 (311)
T 3nf1_A           24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHP-DVATMLNILALVYRDQNKYKDAANLLNDALAIREKT  102 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH-HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence            345677778888888999999999998888873       111 4567788999999999999999999998876300  


Q ss_pred             --CCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 014860          205 --LECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND------GIEP-DIFSLNSMIKGYILSNHVNDALR  275 (417)
Q Consensus       205 --~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~------g~~p-~~~~~~~li~~~~~~g~~~~a~~  275 (417)
                        ...+....++..+...+...|+        +++|.+.|++..+.      +-.| ...++..+...|...|++++|.+
T Consensus       103 ~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  174 (311)
T 3nf1_A          103 LGKDHPAVAATLNNLAVLYGKRGK--------YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEY  174 (311)
T ss_dssp             HCTTCHHHHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHH
T ss_pred             hCCCChHHHHHHHHHHHHHHHcCc--------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHH
Confidence              0112346778899999999999        99999999988764      2222 35677888899999999999999


Q ss_pred             HHHHhhhhC-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------------------------------
Q 014860          276 IFHQMGVVY-----N-YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK------------------------------  319 (417)
Q Consensus       276 ~~~~m~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------------------------------  319 (417)
                      .+++..+..     + ......++..+...|...|++++|.+.++++.+.                              
T Consensus       175 ~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  254 (311)
T 3nf1_A          175 YYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQ  254 (311)
T ss_dssp             HHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCch
Confidence            999886620     1 2224567888999999999999999999988752                              


Q ss_pred             ------------------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          320 ------------------GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       320 ------------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                                        ....+..++..+..+|.+.|++++|.++|++..+.
T Consensus       255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          255 KDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             ---CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence                              11223567888999999999999999999987753

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.33  E-value=7.2e-10  Score=91.83  Aligned_cols=167  Identities=14%  Similarity=0.070  Sum_probs=101.3

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860          172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE  251 (417)
Q Consensus       172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~  251 (417)
                      +..+|..+...|.+.|++++|++.|++..+..    +-+..+|..+...+...|+        +++|...+....... +
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~~~~~--------~~~a~~~~~~~~~~~-~   70 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD----PNNVETLLKLGKTYMDIGL--------PNDAIESLKKFVVLD-T   70 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-C
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcC-c
Confidence            45566666666777777777777777666541    2345666666666666666        666666666665543 2


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860          252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSL  331 (417)
Q Consensus       252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~l  331 (417)
                      -+...+..+...+...++++.|.+.+......  .+.+...+..+...|.+.|++++|++.|++..+... -+..+|..+
T Consensus        71 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l  147 (184)
T 3vtx_A           71 TSAEAYYILGSANFMIDEKQAAIDALQRAIAL--NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSI  147 (184)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHH
Confidence            34455555556666666666666666665542  123455566666666666666666666666655421 245566666


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHc
Q 014860          332 VSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       332 i~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      ..+|.+.|++++|.+.|++..+.
T Consensus       148 g~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          148 GLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhC
Confidence            66666666666666666666553

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.32  E-value=1.1e-10  Score=112.35  Aligned_cols=216  Identities=8%  Similarity=-0.000  Sum_probs=183.8

Q ss_pred             ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH-HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccch
Q 014860          152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL-SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYI  230 (417)
Q Consensus       152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~  230 (417)
                      .++++.+.++.......  .+...+..+...|...|++ ++|++.|++..+..    +.+...|..+...|...|+    
T Consensus        83 ~~~~al~~l~~~~~~~~--~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~----p~~~~a~~~lg~~~~~~g~----  152 (474)
T 4abn_A           83 EMEKTLQQMEEVLGSAQ--VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE----PELVEAWNQLGEVYWKKGD----  152 (474)
T ss_dssp             HHHHHHHHHHHHHTTCC--CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC----CCCHHHHHHHHHHHHHcCC----
Confidence            35677777777766543  6788999999999999999 99999999998862    3458899999999999999    


Q ss_pred             hhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHH
Q 014860          231 NHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS---------NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLC  301 (417)
Q Consensus       231 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~  301 (417)
                          +++|.+.|++..+..  |+...+..+-..|...         |++++|.+.|++..+..  +.+...|..+..+|.
T Consensus       153 ----~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~  224 (474)
T 4abn_A          153 ----VTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYL  224 (474)
T ss_dssp             ----HHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence                999999999999874  7778899999999999         99999999999987732  346888999999999


Q ss_pred             hc--------CCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860          302 AQ--------GRTKNARELCDEMKRKGFV--PSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC  371 (417)
Q Consensus       302 ~~--------g~~~~A~~l~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  371 (417)
                      ..        |++++|.+.|++..+....  -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+...+.
T Consensus       225 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~  303 (474)
T 4abn_A          225 SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLE  303 (474)
T ss_dssp             HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            98        9999999999999885320  378899999999999999999999999998862 335667888889999


Q ss_pred             HcCCHhHHHHHHHHH
Q 014860          372 RRGRAGEAMKLLKEL  386 (417)
Q Consensus       372 ~~g~~~~A~~~~~~m  386 (417)
                      ..|++++|.+.+.++
T Consensus       304 ~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          304 FLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHhccc
Confidence            999999998866554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.32  E-value=1.2e-09  Score=113.10  Aligned_cols=254  Identities=12%  Similarity=0.121  Sum_probs=154.9

Q ss_pred             CCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 014860          101 RFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTII  180 (417)
Q Consensus       101 ~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li  180 (417)
                      ......+...+...|.+++|..+|+...      -.....+.++.   ..+++++|.++.++.       .+..+|..+.
T Consensus      1049 ~~d~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aerv-------n~p~vWsqLA 1112 (1630)
T 1xi4_A         1049 NYDAPDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERC-------NEPAVWSQLA 1112 (1630)
T ss_pred             hccHHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhc-------CCHHHHHHHH
Confidence            3445667777778888888888887752      12222333333   566677777776644       3456777777


Q ss_pred             HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860          181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM  260 (417)
Q Consensus       181 ~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  260 (417)
                      .++.+.|++++|+..|.+.  .       |...|.-++..+.+.|+        +++|.+.|...++..  ++....+.+
T Consensus      1113 KAql~~G~~kEAIdsYiKA--d-------D~say~eVa~~~~~lGk--------yEEAIeyL~mArk~~--~e~~Idt~L 1173 (1630)
T 1xi4_A         1113 KAQLQKGMVKEAIDSYIKA--D-------DPSSYMEVVQAANTSGN--------WEELVKYLQMARKKA--RESYVETEL 1173 (1630)
T ss_pred             HHHHhCCCHHHHHHHHHhc--C-------ChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhhc--ccccccHHH
Confidence            7777777777777777543  1       56667777777777777        777777776655543  333333346


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860          261 IKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE  340 (417)
Q Consensus       261 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~  340 (417)
                      ..+|++.+++++...+.    .    .++...|..+-..|...|++++|..+|...         ..|..+..+|++.|+
T Consensus      1174 afaYAKl~rleele~fI----~----~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge 1236 (1630)
T 1xi4_A         1174 IFALAKTNRLAELEEFI----N----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGE 1236 (1630)
T ss_pred             HHHHHhhcCHHHHHHHH----h----CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCC
Confidence            66677776666433332    1    144455555666666666666666666653         256666666666666


Q ss_pred             HHHHHHHHHHHHHc------------------------CCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhh
Q 014860          341 VEETVKNLWEMIEK------------------------QRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYT  396 (417)
Q Consensus       341 ~~~A~~~~~~m~~~------------------------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t  396 (417)
                      +++|.+.+++....                        ++..+...+..++..|.+.|.+++|..+++.-....--....
T Consensus      1237 ~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A         1237 YQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence            66666655543211                        122355567788888889999999999987766544113334


Q ss_pred             HHHHHHHHHh
Q 014860          397 YTKLLDVLED  406 (417)
Q Consensus       397 ~~~ll~~~~~  406 (417)
                      |.-+-..+++
T Consensus      1317 ftELaiLyaK 1326 (1630)
T 1xi4_A         1317 FTELAILYSK 1326 (1630)
T ss_pred             HHHHHHHHHh
Confidence            4444444433

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.31  E-value=1e-09  Score=90.91  Aligned_cols=168  Identities=15%  Similarity=0.143  Sum_probs=147.2

Q ss_pred             CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC
Q 014860          210 SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN  289 (417)
Q Consensus       210 ~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~  289 (417)
                      +...|..+-..+...|+        +++|++.|++..+.. +-+..++..+...|.+.|++++|...+......  .+.+
T Consensus         4 ~~~iy~~lG~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~   72 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGD--------FDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTS   72 (184)
T ss_dssp             CHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCC
T ss_pred             HHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--Cchh
Confidence            67889999999999999        999999999998865 446788999999999999999999999998763  2346


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014860          290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDE  369 (417)
Q Consensus       290 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  369 (417)
                      ...+..+...+...++++.|...+.+..... +-+...+..+..+|.+.|++++|++.|++..+.. +-+..+|..+..+
T Consensus        73 ~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~  150 (184)
T 3vtx_A           73 AEAYYILGSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLA  150 (184)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHH
Confidence            7778888889999999999999999988764 3368889999999999999999999999998862 4467789999999


Q ss_pred             HHHcCCHhHHHHHHHHHHHCC
Q 014860          370 ICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       370 ~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      |.+.|++++|.+.|++..+.+
T Consensus       151 ~~~~g~~~~A~~~~~~al~~~  171 (184)
T 3vtx_A          151 YEGKGLRDEAVKYFKKALEKE  171 (184)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHCCCHHHHHHHHHHHHhCC
Confidence            999999999999999988764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.28  E-value=2.8e-09  Score=98.92  Aligned_cols=272  Identities=11%  Similarity=0.016  Sum_probs=193.0

Q ss_pred             HHHHhccCChhHHHHHHHHhhcCCCCCCCHH----HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCH----HHHHHH
Q 014860          108 CNVMTLQEDPLVCLELFNWASKQPRFRHDAS----TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTE----ALYNTI  179 (417)
Q Consensus       108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~l  179 (417)
                      ...+...|+++.|+..++....... ..+..    ++..+...+...|++++|.+.+++..+......+.    .++..+
T Consensus        21 a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l   99 (373)
T 1hz4_A           21 AQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   99 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3445678999999999999865542 22222    45666677889999999999999887642211222    346678


Q ss_pred             HHHHHHhCCHHHHHHHHHHhHhCCC-CCCC--C-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC--C-
Q 014860          180 IYFFAEARKLSRAVYVFKYMKNSRN-LECR--P-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE--P-  252 (417)
Q Consensus       180 i~~~~~~g~~~~a~~~~~~m~~~~~-~g~~--p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~--p-  252 (417)
                      ...+...|++++|...+++..+... .+..  | ....+..+...+...|+        +++|...+++..+..-.  + 
T Consensus       100 a~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~  171 (373)
T 1hz4_A          100 SEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--------LDEAEASARSGIEVLSSYQPQ  171 (373)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHTTTSCGG
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHhhccCcH
Confidence            8889999999999999998765310 0111  2 24566778888999999        99999999988753221  1 


Q ss_pred             -CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---
Q 014860          253 -DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYD-----YLIHGLCAQGRTKNARELCDEMKRKGFVP---  323 (417)
Q Consensus       253 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~l~~~m~~~g~~p---  323 (417)
                       ...++..+...+...|++++|...+++......-......+.     ..+..+...|++++|...+++.......+   
T Consensus       172 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~  251 (373)
T 1hz4_A          172 QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHF  251 (373)
T ss_dssp             GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGG
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchh
Confidence             235677788889999999999999998765211111111222     23344779999999999999887643221   


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          324 SSKSYNSLVSALALNGEVEETVKNLWEMIEK----QRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       324 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      ....+..+...+...|+.++|...+++....    |..++. ..+..+..++...|+.++|...+++...
T Consensus       252 ~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~  321 (373)
T 1hz4_A          252 LQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  321 (373)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            1335677888999999999999999987654    322233 2566677788999999999999988765

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.27  E-value=1.3e-09  Score=89.73  Aligned_cols=164  Identities=15%  Similarity=0.068  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD  253 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~  253 (417)
                      ..+..+...+...|++++|...|+++.+.    .+.+...+..+...+...|+        +++|.+.++++.+.. +.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~   75 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDA----DAFDVDVALHLGIAYVKTGA--------VDRGTELLERSLADA-PDN   75 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCT----TSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CccChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhcC-CCC
Confidence            34555556666666666666666666543    12345556666666666666        666666666665542 234


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS  333 (417)
Q Consensus       254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~  333 (417)
                      ..++..+...+...|++++|.+.++.+...  .+.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus        76 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~  152 (186)
T 3as5_A           76 VKVATVLGLTYVQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAF  152 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHH
Confidence            455555555555666666666666555442  12334445555555555555555555555554432 123444555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHH
Q 014860          334 ALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       334 ~~~~~g~~~~A~~~~~~m~~  353 (417)
                      .|...|++++|.+.+++..+
T Consensus       153 ~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          153 SYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            55555555555555555443

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.26  E-value=7.2e-09  Score=99.23  Aligned_cols=271  Identities=10%  Similarity=-0.067  Sum_probs=172.6

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHhhcC-------CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCC------CC
Q 014860          103 NNEELCNVMTLQEDPLVCLELFNWASKQ-------PRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATP------SF  169 (417)
Q Consensus       103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~  169 (417)
                      .|+.+..++...|+.++|++.|+...+.       ..-+....+|+.+..++...|++++|...+++..+..      ..
T Consensus        53 ~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~  132 (472)
T 4g1t_A           53 MCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYR  132 (472)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccc
Confidence            4788888889999999999999887431       1123457789999999999999999999988876531      11


Q ss_pred             CCCHHHHHHHHHHHHHhC--CHHHHHHHHHHhHhCCCCCCCC-CHHHHHHHHHH---HHhcCCccchhhhhHHHHHHHHH
Q 014860          170 CGTEALYNTIIYFFAEAR--KLSRAVYVFKYMKNSRNLECRP-SIRSYNILFTA---FLSRGKNTYINHVYMETIRCLFK  243 (417)
Q Consensus       170 ~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~g~~p-~~~~~~~li~~---~~~~g~~~~~~~~~~~~a~~~~~  243 (417)
                      .....++..+..++.+.|  ++++|+..|++..+.     .| +...+..+...   +...++        .++|++.++
T Consensus       133 ~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~-----~p~~~~~~~~~~~~~~~l~~~~~--------~~~al~~~~  199 (472)
T 4g1t_A          133 IESPELDCEEGWTRLKCGGNQNERAKVCFEKALEK-----KPKNPEFTSGLAIASYRLDNWPP--------SQNAIDPLR  199 (472)
T ss_dssp             CCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-----STTCHHHHHHHHHHHHHHHHSCC--------CCCTHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHhcCchH--------HHHHHHHHH
Confidence            134567776666666654  699999999999875     34 44555554444   344555        566777777


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860          244 QMVNDGIEPDIFSLNSMIKGYIL----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK  319 (417)
Q Consensus       244 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  319 (417)
                      +..+.. +.+..++..+...+..    .|++++|.+.+++....  .+.+...+..+...|...|++++|...+++..+.
T Consensus       200 ~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~--~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~  276 (472)
T 4g1t_A          200 QAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK--APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY  276 (472)
T ss_dssp             HHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh--CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh
Confidence            766543 3345555555444443    35667788888776552  2345667777888888888888888888877764


Q ss_pred             CCCCCHHHHHHHHHHHHhc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 014860          320 GFVPSSKSYNSLVSALALN-------------------GEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAM  380 (417)
Q Consensus       320 g~~p~~~~~~~li~~~~~~-------------------g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  380 (417)
                      .. -+..++..+..+|...                   +..++|...+++..+.. +.+..++..+...|...|++++|.
T Consensus       277 ~p-~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~  354 (472)
T 4g1t_A          277 IP-NNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAE  354 (472)
T ss_dssp             ST-TCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHH
T ss_pred             CC-ChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHH
Confidence            32 1445555554444321                   12345555555555431 222334555666666667777777


Q ss_pred             HHHHHHHHCCC
Q 014860          381 KLLKELQNKNL  391 (417)
Q Consensus       381 ~~~~~m~~~~~  391 (417)
                      +.|++..+...
T Consensus       355 ~~~~kaL~~~~  365 (472)
T 4g1t_A          355 YYFQKEFSKEL  365 (472)
T ss_dssp             HHHHHHHHSCC
T ss_pred             HHHHHHHhcCC
Confidence            76666666544

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.25  E-value=1.1e-08  Score=106.03  Aligned_cols=235  Identities=11%  Similarity=0.070  Sum_probs=178.4

Q ss_pred             HHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 014860          105 EELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFA  184 (417)
Q Consensus       105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~  184 (417)
                      +.++....+. +.....++.+... .    .+   ...+...+...|.+++|..+|++..      ......+.++.   
T Consensus      1026 nlLi~tAIka-D~~Rv~eyI~kLd-~----~d---~~eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie--- 1087 (1630)
T 1xi4_A         1026 NLLILTAIKA-DRTRVMEYINRLD-N----YD---APDIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE--- 1087 (1630)
T ss_pred             HHHHHHHHHh-ChhhHHHHHHHhh-h----cc---HHHHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---
Confidence            3444444444 5666667666552 1    12   3447778889999999999999862      12233344433   


Q ss_pred             HhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 014860          185 EARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGY  264 (417)
Q Consensus       185 ~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~  264 (417)
                      ..+++++|.++.++..         +..+|..+-.++...|+        +++|.+.|.+.      -|...|..++.++
T Consensus      1088 ~i~nldrAiE~Aervn---------~p~vWsqLAKAql~~G~--------~kEAIdsYiKA------dD~say~eVa~~~ 1144 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERCN---------EPAVWSQLAKAQLQKGM--------VKEAIDSYIKA------DDPSSYMEVVQAA 1144 (1630)
T ss_pred             HHhhHHHHHHHHHhcC---------CHHHHHHHHHHHHhCCC--------HHHHHHHHHhc------CChHHHHHHHHHH
Confidence            7899999999999663         46889999999999999        99999999653      4777889999999


Q ss_pred             HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860          265 ILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEET  344 (417)
Q Consensus       265 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  344 (417)
                      .+.|++++|.+.|....+ ..  ++....+.++.+|++.+++++...+.    +   .++...|..+-..|...|++++|
T Consensus      1145 ~~lGkyEEAIeyL~mArk-~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA 1214 (1630)
T 1xi4_A         1145 NTSGNWEELVKYLQMARK-KA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAA 1214 (1630)
T ss_pred             HHcCCHHHHHHHHHHHHh-hc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHH
Confidence            999999999999998776 22  44333445999999999998655543    2   34667788899999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHH
Q 014860          345 VKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVL  404 (417)
Q Consensus       345 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~  404 (417)
                      ..+|...         ..|..+...|++.|++++|.+.+++-.     +..+|.-+-.+|
T Consensus      1215 ~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-----n~~aWkev~~ac 1260 (1630)
T 1xi4_A         1215 KLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-----STRTWKEVCFAC 1260 (1630)
T ss_pred             HHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-----CHHHHHHHHHHH
Confidence            9999985         379999999999999999999988662     345655554444

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.24  E-value=1.7e-09  Score=88.93  Aligned_cols=164  Identities=8%  Similarity=0.005  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH
Q 014860          138 STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL  217 (417)
Q Consensus       138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l  217 (417)
                      ..+..+...+...|++++|.+.++.+.+...  .+...+..+...+...|++++|...++++.+.    .+.+...|..+
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~   82 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADA--FDVDVALHLGIAYVKTGAVDRGTELLERSLAD----APDNVKVATVL   82 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc--cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCCCHHHHHHH
Confidence            4455566666777777777777777766543  45667777777777777777777777777664    13456667777


Q ss_pred             HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHH
Q 014860          218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLI  297 (417)
Q Consensus       218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li  297 (417)
                      ...+...|+        +++|.+.++++.+.. +.+...+..+...+...|++++|.+.++...+..  +.+...+..+.
T Consensus        83 a~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la  151 (186)
T 3as5_A           83 GLTYVQVQK--------YDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR--PNEGKVHRAIA  151 (186)
T ss_dssp             HHHHHHHTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred             HHHHHHhcC--------HHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC--ccchHHHHHHH
Confidence            777777777        777777777776653 3456667777777777777777777777776521  34566777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 014860          298 HGLCAQGRTKNARELCDEMKR  318 (417)
Q Consensus       298 ~~~~~~g~~~~A~~l~~~m~~  318 (417)
                      ..+...|++++|.+.+++..+
T Consensus       152 ~~~~~~~~~~~A~~~~~~~~~  172 (186)
T 3as5_A          152 FSYEQMGRHEEALPHFKKANE  172 (186)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHH
Confidence            777777888888777777654

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.22  E-value=1.3e-10  Score=108.79  Aligned_cols=282  Identities=13%  Similarity=-0.005  Sum_probs=202.6

Q ss_pred             hhHHHHHHhcCCCC-----CCHHHHHHHHhccCChhHHHHHHHHhhcC---CCC-CCCHHHHHHHHHHHHccCChhHHHH
Q 014860           88 DTQFRCAVSELPPR-----FNNEELCNVMTLQEDPLVCLELFNWASKQ---PRF-RHDASTYHIMTRKLGAAKMYQEMDD  158 (417)
Q Consensus        88 ~~~~~~~l~~~p~~-----~~~~~ll~~l~~~~~~~~A~~~~~~~~~~---~~~-~~~~~~~~~li~~~~~~~~~~~a~~  158 (417)
                      ...+.+.+...|..     ..+..+...+...|+++.|+..|+.+...   .+- +....++..+...+...|++++|..
T Consensus        29 ~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  108 (406)
T 3sf4_A           29 VSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIV  108 (406)
T ss_dssp             HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            34456666655543     24556777788999999999999886432   111 2235677888889999999999999


Q ss_pred             HHHHHHcCCCCCCC----HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHhHhCC-CCCC-CCCHH
Q 014860          159 VVNQMLATPSFCGT----EALYNTIIYFFAEARK--------------------LSRAVYVFKYMKNSR-NLEC-RPSIR  212 (417)
Q Consensus       159 ~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~~-~~g~-~p~~~  212 (417)
                      .++...+......+    ..++..+...|...|+                    +++|...+++..+.. ..+. .....
T Consensus       109 ~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~  188 (406)
T 3sf4_A          109 CCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR  188 (406)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHH
Confidence            99888764321122    4588899999999999                    999999988765420 0011 11245


Q ss_pred             HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 014860          213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI-EPD----IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYL  287 (417)
Q Consensus       213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  287 (417)
                      ++..+...+...|+        +++|.+.+++..+... .++    ..++..+...|...|++++|...+++......-.
T Consensus       189 ~~~~la~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  260 (406)
T 3sf4_A          189 AFGNLGNTHYLLGN--------FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQL  260 (406)
T ss_dssp             HHHHHHHHHHHHTB--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHccC--------HHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhC
Confidence            78889999999999        9999999998774210 112    3478888899999999999999999875421111


Q ss_pred             CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----
Q 014860          288 PN----SFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVP-SSKSYNSLVSALALNGEVEETVKNLWEMIEK----  354 (417)
Q Consensus       288 ~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----  354 (417)
                      .+    ..++..+...|...|++++|...+++..+.    +..+ ...++..+...|...|++++|.+.+++..+.    
T Consensus       261 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~  340 (406)
T 3sf4_A          261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV  340 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             cCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence            12    567888999999999999999999987653    1111 1567888999999999999999999987664    


Q ss_pred             CCCC-CHHHHHHHHHHHHHcCCHh
Q 014860          355 QRPV-DFITYRTVLDEICRRGRAG  377 (417)
Q Consensus       355 g~~p-~~~~~~~li~~~~~~g~~~  377 (417)
                      +..+ ...++..+...+...|+..
T Consensus       341 ~~~~~~~~~~~~l~~~~~~~g~~~  364 (406)
T 3sf4_A          341 GDKSGELTARLNLSDLQMVLGLSY  364 (406)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             cCCcchhHHHHHHHHHHHHhhHhH
Confidence            2112 2346667777787777653

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.21  E-value=6e-10  Score=104.67  Aligned_cols=260  Identities=10%  Similarity=0.007  Sum_probs=191.7

Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHhHhCC-CCC-CCCCH
Q 014860          138 STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTE----ALYNTIIYFFAEARKLSRAVYVFKYMKNSR-NLE-CRPSI  211 (417)
Q Consensus       138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~g-~~p~~  211 (417)
                      ..+..+...+...|++++|...++.+.+...  .+.    ..+..+...|...|++++|...|++..+.. ..+ .....
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  126 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGT--EDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEA  126 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--SCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcc--cChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHH
Confidence            3344556678899999999999999998754  333    578899999999999999999999876530 001 12245


Q ss_pred             HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----C-CCCCHHHHHHHHHHHHhcCC-----------------
Q 014860          212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----G-IEPDIFSLNSMIKGYILSNH-----------------  269 (417)
Q Consensus       212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g-~~p~~~~~~~li~~~~~~g~-----------------  269 (417)
                      .++..+...|...|+        +++|.+.+++..+.    + ......++..+...|...|+                 
T Consensus       127 ~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~  198 (411)
T 4a1s_A          127 KSSGNLGNTLKVMGR--------FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEA  198 (411)
T ss_dssp             HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred             HHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHH
Confidence            678889999999999        99999999887653    1 12234577888899999999                 


Q ss_pred             HHHHHHHHHHhhhh---CCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHhcCC
Q 014860          270 VNDALRIFHQMGVV---YNY-LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGF-VPS----SKSYNSLVSALALNGE  340 (417)
Q Consensus       270 ~~~a~~~~~~m~~~---~~~-~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~~~~~li~~~~~~g~  340 (417)
                      +++|.+.+++..+.   .+- ......+..+...|...|++++|...+++..+... .++    ..++..+...|...|+
T Consensus       199 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  278 (411)
T 4a1s_A          199 LTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQ  278 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcC
Confidence            99999988876431   111 12345788888999999999999999998875311 112    2378889999999999


Q ss_pred             HHHHHHHHHHHHHcC--CC---CCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC--CC----hhhHHHHHHHHHhh
Q 014860          341 VEETVKNLWEMIEKQ--RP---VDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL--ID----GYTYTKLLDVLEDD  407 (417)
Q Consensus       341 ~~~A~~~~~~m~~~g--~~---p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~--p~----~~t~~~ll~~~~~~  407 (417)
                      +++|...+++..+..  ..   ....++..+...|...|++++|.+.+++......  .+    ..++..+-..+...
T Consensus       279 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~  356 (411)
T 4a1s_A          279 FEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI  356 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence            999999999887651  11   1145778888899999999999999998876421  12    33555555555544

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.20  E-value=1.4e-09  Score=104.23  Aligned_cols=265  Identities=8%  Similarity=-0.061  Sum_probs=170.6

Q ss_pred             cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHH---HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh----
Q 014860          114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRK---LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA----  186 (417)
Q Consensus       114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~----  186 (417)
                      .+++++|++.|+.+.+..  +-++..+..+..+   +...++.++|.+.++...+..+  .+..++..+...+...    
T Consensus       151 ~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p--~~~~~~~~l~~~~~~~~~~~  226 (472)
T 4g1t_A          151 GNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP--DNQYLKVLLALKLHKMREEG  226 (472)
T ss_dssp             TTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS--SCHHHHHHHHHHHHHCC---
T ss_pred             cccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC--cchHHHHHHHHHHHHHHhhh
Confidence            457899999999987644  3455555554444   4567888889999988887654  5666676666555544    


Q ss_pred             CCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860          187 RKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL  266 (417)
Q Consensus       187 g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  266 (417)
                      |++++|.+.+++....    .+.+..++..+...|...|+        +++|.+.|++..+.. +-+..++..+-..|..
T Consensus       227 ~~~~~a~~~~~~al~~----~~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~  293 (472)
T 4g1t_A          227 EEEGEGEKLVEEALEK----APGVTDVLRSAAKFYRRKDE--------PDKAIELLKKALEYI-PNNAYLHCQIGCCYRA  293 (472)
T ss_dssp             ---CHHHHHHHHHHHH----CSSCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHh----CccHHHHHHHHHHHHHHcCc--------hHHHHHHHHHHHHhC-CChHHHHHHHHHHHHH
Confidence            6788999999988875    24567889999999999999        999999999988764 3345566666555532


Q ss_pred             c-------------------CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-
Q 014860          267 S-------------------NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSK-  326 (417)
Q Consensus       267 ~-------------------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-  326 (417)
                      .                   +..+.|...++...+..  +.+...+..+...|...|++++|++.|++..+....+... 
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~  371 (472)
T 4g1t_A          294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ  371 (472)
T ss_dssp             HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence            2                   23566777777765522  2344567788889999999999999999988764433221 


Q ss_pred             -HHHHHHH-HHHhcCCHHHHHHHHHHHHHcC-----------------------CCCCHHHHHHHHHHHHHcCCHhHHHH
Q 014860          327 -SYNSLVS-ALALNGEVEETVKNLWEMIEKQ-----------------------RPVDFITYRTVLDEICRRGRAGEAMK  381 (417)
Q Consensus       327 -~~~~li~-~~~~~g~~~~A~~~~~~m~~~g-----------------------~~p~~~~~~~li~~~~~~g~~~~A~~  381 (417)
                       .+..+.. .+...|+.++|+..|.+..+..                       -+.+..+|..+...|...|+.++|.+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~  451 (472)
T 4g1t_A          372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE  451 (472)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence             2222222 2346789999999888776531                       13345678888888889999999999


Q ss_pred             HHHHHHHCCC--CChhhH
Q 014860          382 LLKELQNKNL--IDGYTY  397 (417)
Q Consensus       382 ~~~~m~~~~~--p~~~t~  397 (417)
                      .|++..+.+.  |+..+|
T Consensus       452 ~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          452 DSERGLESGSLIPSASSW  469 (472)
T ss_dssp             ------------------
T ss_pred             HHHHHHhcCCCCCcHhhc
Confidence            9998887664  554443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.19  E-value=4.8e-10  Score=101.63  Aligned_cols=258  Identities=13%  Similarity=0.021  Sum_probs=188.1

Q ss_pred             hHHHHHHhcCCCC-----CCHHHHHHHHhccCChhHHHHHHHHhhcC---CC-CCCCHHHHHHHHHHHHccCChhHHHHH
Q 014860           89 TQFRCAVSELPPR-----FNNEELCNVMTLQEDPLVCLELFNWASKQ---PR-FRHDASTYHIMTRKLGAAKMYQEMDDV  159 (417)
Q Consensus        89 ~~~~~~l~~~p~~-----~~~~~ll~~l~~~~~~~~A~~~~~~~~~~---~~-~~~~~~~~~~li~~~~~~~~~~~a~~~  159 (417)
                      ..+.+.+...|..     ..+..+...+...|+++.|++.++.+...   .+ .+....++..+...+...|++++|.+.
T Consensus        26 ~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  105 (338)
T 3ro2_A           26 SFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVC  105 (338)
T ss_dssp             HHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence            4455666555543     24556777788999999999999887532   11 122356778888899999999999999


Q ss_pred             HHHHHcCCCCCCC----HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHhHhCC-CCC-CCCCHHH
Q 014860          160 VNQMLATPSFCGT----EALYNTIIYFFAEARK--------------------LSRAVYVFKYMKNSR-NLE-CRPSIRS  213 (417)
Q Consensus       160 ~~~m~~~~~~~~~----~~~~~~li~~~~~~g~--------------------~~~a~~~~~~m~~~~-~~g-~~p~~~~  213 (417)
                      +.+..+.....++    ..++..+...|...|+                    +++|.+.+++..+.. ..+ ......+
T Consensus       106 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~  185 (338)
T 3ro2_A          106 CQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRA  185 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence            9887764221122    4488889999999999                    999999998765420 001 1112457


Q ss_pred             HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC
Q 014860          214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GI-EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP  288 (417)
Q Consensus       214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~  288 (417)
                      +..+...+...|+        +++|.+.+++..+.    +. .....++..+...+...|++++|.+.+++......-..
T Consensus       186 ~~~l~~~~~~~~~--------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~  257 (338)
T 3ro2_A          186 FGNLGNTHYLLGN--------FRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK  257 (338)
T ss_dssp             HHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCC--------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhc
Confidence            8888999999999        99999999887642    11 11134778888999999999999999998754211112


Q ss_pred             C----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          289 N----SFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFV-PSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       289 ~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      +    ..++..+...|...|++++|...+++..+.    +.. ....++..+...|...|++++|...+++..+.
T Consensus       258 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          258 DRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             chhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            2    567788889999999999999999987653    111 11457788999999999999999999998875

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.18  E-value=2.4e-09  Score=99.81  Aligned_cols=235  Identities=9%  Similarity=-0.042  Sum_probs=149.6

Q ss_pred             HHHHhccCChhHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCC-----CHHHHHH
Q 014860          108 CNVMTLQEDPLVCLELFNWASKQPRFRH----DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG-----TEALYNT  178 (417)
Q Consensus       108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~~  178 (417)
                      ...+...|+++.|++.|+.+.+...-.+    ...++..+...+...|++++|.+.+.+..+.....+     ...+++.
T Consensus       110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  189 (383)
T 3ulq_A          110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL  189 (383)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            3345678899999999988865321112    346677788888889999999888888776422112     2457788


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCCC-CCC-CCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CC-C
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSRN-LEC-RPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GI-E  251 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~~-~g~-~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~-~  251 (417)
                      +...|...|++++|...|++..+... .+- .....++..+...|...|+        +++|.+.|++..+.    +. +
T Consensus       190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~--------~~~A~~~~~~al~~~~~~~~~~  261 (383)
T 3ulq_A          190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ--------YEDAIPYFKRAIAVFEESNILP  261 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHhhccch
Confidence            88888899999999888887764300 000 0112467788888888888        88888888877651    22 3


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-
Q 014860          252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY---NYLPNSFSYDYLIHGLCAQGR---TKNARELCDEMKRKGFVPS-  324 (417)
Q Consensus       252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-  324 (417)
                      ....++..+...|.+.|++++|.+.+++..+..   +-......+..+-..|...|+   +++|..++++.   +..|+ 
T Consensus       262 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~  338 (383)
T 3ulq_A          262 SLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADL  338 (383)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred             hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHH
Confidence            335667777788888888888888887764411   111112234555556666666   55555555543   22222 


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          325 SKSYNSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      ...+..+...|...|++++|.+.+++..+
T Consensus       339 ~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          339 EDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            23455566666666666666666666554

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.14  E-value=9.2e-10  Score=97.27  Aligned_cols=210  Identities=13%  Similarity=0.059  Sum_probs=143.5

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCC----CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860          171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSR----NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV  246 (417)
Q Consensus       171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~  246 (417)
                      ....++..+...|...|++++|+..|++..+..    +...+....+|..+...+...|+        +++|.+.|++..
T Consensus        41 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al  112 (283)
T 3edt_B           41 DVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------YKEAEPLCKRAL  112 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTC--------HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhcc--------HHHHHHHHHHHH
Confidence            346778888999999999999999998887530    00112346679999999999999        999999999887


Q ss_pred             HC------C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh----C-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860          247 ND------G-IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVV----Y-N-YLPNSFSYDYLIHGLCAQGRTKNARELC  313 (417)
Q Consensus       247 ~~------g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~-~~~~~~~~~~li~~~~~~g~~~~A~~l~  313 (417)
                      +.      . -+....++..+...|...|++++|.+.+++..+.    . + ......++..+...|...|++++|...+
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~  192 (283)
T 3edt_B          113 EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLY  192 (283)
T ss_dssp             HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            54      1 1234567888999999999999999999988662    0 1 2224567888999999999999999999


Q ss_pred             HHHHHC-------CCCCC-HHHHHHHHHHHHhcCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH
Q 014860          314 DEMKRK-------GFVPS-SKSYNSLVSALALNGE------VEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEA  379 (417)
Q Consensus       314 ~~m~~~-------g~~p~-~~~~~~li~~~~~~g~------~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  379 (417)
                      ++..+.       ...+. ...|..+...+...+.      +..+...+..... ..+....++..+...|...|++++|
T Consensus       193 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A  271 (283)
T 3edt_B          193 KEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRSLGALYRRQGKLEAA  271 (283)
T ss_dssp             HHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHHHcCCHHHH
Confidence            988753       11222 2233333333333222      2222222221111 1112345778889999999999999


Q ss_pred             HHHHHHHHHC
Q 014860          380 MKLLKELQNK  389 (417)
Q Consensus       380 ~~~~~~m~~~  389 (417)
                      ..++++..+.
T Consensus       272 ~~~~~~al~~  281 (283)
T 3edt_B          272 HTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            9999987653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.14  E-value=1.1e-09  Score=96.87  Aligned_cols=161  Identities=14%  Similarity=0.053  Sum_probs=120.2

Q ss_pred             hCCHHHHHHHHHHhHhCC----CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC------CC-CCCH
Q 014860          186 ARKLSRAVYVFKYMKNSR----NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND------GI-EPDI  254 (417)
Q Consensus       186 ~g~~~~a~~~~~~m~~~~----~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~------g~-~p~~  254 (417)
                      .|++++|+..|++..+.-    ....+....++..+...+...|+        +++|+..+++..+.      +- +...
T Consensus        14 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (283)
T 3edt_B           14 LVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK--------YKEAAHLLNDALAIREKTLGKDHPAVA   85 (283)
T ss_dssp             CSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCTTCHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHccc--------HHHHHHHHHHHHHHHHHHcCCcchHHH
Confidence            455555555555444310    00112346779999999999999        99999999988754      22 2235


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhhC-----C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCC
Q 014860          255 FSLNSMIKGYILSNHVNDALRIFHQMGVVY-----N-YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK------GFV  322 (417)
Q Consensus       255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~  322 (417)
                      .++..+...|...|++++|.+.+++.....     . .+.....+..+...|...|++++|...+++..+.      +..
T Consensus        86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  165 (283)
T 3edt_B           86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD  165 (283)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            688889999999999999999999886521     1 1234677888999999999999999999998764      112


Q ss_pred             C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          323 P-SSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       323 p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      | ...++..+...|...|++++|..++++..+.
T Consensus       166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            2 3567888999999999999999999998863

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.13  E-value=2.9e-09  Score=99.24  Aligned_cols=235  Identities=11%  Similarity=-0.017  Sum_probs=176.3

Q ss_pred             HHHHHHccCChhHHHHHHHHHHcCCCCCC----CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCC-CC--CCCCHHHHH
Q 014860          143 MTRKLGAAKMYQEMDDVVNQMLATPSFCG----TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRN-LE--CRPSIRSYN  215 (417)
Q Consensus       143 li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~g--~~p~~~~~~  215 (417)
                      ....+...|++++|.+.++...+.-...+    ...++..+...|...|++++|...+++..+.-. .+  ......+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            44567789999999999999988522112    356888999999999999999999998775310 00  011246788


Q ss_pred             HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCC-
Q 014860          216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GIEP-DIFSLNSMIKGYILSNHVNDALRIFHQMGVV---YNY-  286 (417)
Q Consensus       216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~-  286 (417)
                      .+...|...|+        +++|.+.|++..+.    +-.+ ...++..+-..|...|++++|.+.+++..+.   .+. 
T Consensus       189 ~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~  260 (383)
T 3ulq_A          189 LFATNFLDLKQ--------YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNIL  260 (383)
T ss_dssp             HHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             HHHHHHHHhcC--------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccc
Confidence            89999999999        99999999887743    2111 1247888999999999999999999887551   133 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCC
Q 014860          287 LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVPSSKSYNSLVSALALNGE---VEETVKNLWEMIEKQRPVD  359 (417)
Q Consensus       287 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~  359 (417)
                      +....++..+...|.+.|++++|...+++..+.    +-......+..+-..|...|+   +++|+.++++.   +..|+
T Consensus       261 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~  337 (383)
T 3ulq_A          261 PSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYAD  337 (383)
T ss_dssp             GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHH
T ss_pred             hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHH
Confidence            334677889999999999999999999987653    111123345677888888898   77777777765   22333


Q ss_pred             -HHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          360 -FITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       360 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                       ...+..+...|...|++++|.+.+++..+
T Consensus       338 ~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          338 LEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence             34677888899999999999999998765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.12  E-value=1.9e-08  Score=93.52  Aligned_cols=231  Identities=9%  Similarity=-0.045  Sum_probs=143.6

Q ss_pred             HhccCChhHHHHHHHHhhcCCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCC-----CHHHHHHHHH
Q 014860          111 MTLQEDPLVCLELFNWASKQPRFRHD----ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG-----TEALYNTIIY  181 (417)
Q Consensus       111 l~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~~li~  181 (417)
                      +...|+++.|+..|+.+.+...-.++    ..++..+...+...|++++|...+.+..+.....+     ...+++.+..
T Consensus       111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~  190 (378)
T 3q15_A          111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG  190 (378)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence            45778888899888887643222232    45677777788888888888888877765321111     2456778888


Q ss_pred             HHHHhCCHHHHHHHHHHhHhCC-CCCCC-CCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-----CCCCCCH
Q 014860          182 FFAEARKLSRAVYVFKYMKNSR-NLECR-PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-----DGIEPDI  254 (417)
Q Consensus       182 ~~~~~g~~~~a~~~~~~m~~~~-~~g~~-p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~  254 (417)
                      .|...|++++|...|++..+.. ..+.. ....+++.+...|...|+        +++|.+.|++..+     .. +...
T Consensus       191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~--------~~~A~~~~~~al~~~~~~~~-~~~~  261 (378)
T 3q15_A          191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGD--------DQMAVEHFQKAAKVSREKVP-DLLP  261 (378)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHCG-GGHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHhhCC-hhHH
Confidence            8888888888888888766520 00111 123467777788888888        8888888877765     32 2235


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC---CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HHH
Q 014860          255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYN---YLPNSFSYDYLIHGLCAQGR---TKNARELCDEMKRKGFVPS-SKS  327 (417)
Q Consensus       255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~l~~~m~~~g~~p~-~~~  327 (417)
                      .++..+...|.+.|++++|...+++..+...   -......+..+-..|...++   +++|...+++   .+..|+ ...
T Consensus       262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~  338 (378)
T 3q15_A          262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEAC  338 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHH
Confidence            5666777777777888777777777654221   11223344455555555566   5555555554   222222 234


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          328 YNSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       328 ~~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      +..+...|...|+.++|...|++..+
T Consensus       339 ~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          339 ARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            45566666666777776666666544

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.09  E-value=5.9e-09  Score=104.64  Aligned_cols=167  Identities=10%  Similarity=0.003  Sum_probs=127.7

Q ss_pred             CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860          135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY  214 (417)
Q Consensus       135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~  214 (417)
                      -+..+|+.+..++.+.|++++|.+.|++..+...  .+...|+.+..+|.+.|++++|++.|++..+..    +-+...|
T Consensus         7 ~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P--~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~----P~~~~a~   80 (723)
T 4gyw_A            7 THADSLNNLANIKREQGNIEEAVRLYRKALEVFP--EFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS----PTFADAY   80 (723)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC----CCCHHHH
Confidence            3567788888888888888888888888877654  467788888888888888888888888887651    2347778


Q ss_pred             HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH
Q 014860          215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYD  294 (417)
Q Consensus       215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  294 (417)
                      +.+-..+...|+        +++|++.|++..+.. +-+...|+.+-.+|.+.|++++|.+.|++..+..  +-+...|.
T Consensus        81 ~nLg~~l~~~g~--------~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~--P~~~~a~~  149 (723)
T 4gyw_A           81 SNMGNTLKEMQD--------VQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK--PDFPDAYC  149 (723)
T ss_dssp             HHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHH
T ss_pred             HHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHh
Confidence            888888888888        888888888877654 3356778888888888888888888888776521  23567788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          295 YLIHGLCAQGRTKNARELCDEMKR  318 (417)
Q Consensus       295 ~li~~~~~~g~~~~A~~l~~~m~~  318 (417)
                      .+...|...|++++|.+.+++..+
T Consensus       150 ~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          150 NLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             hhhhHHHhcccHHHHHHHHHHHHH
Confidence            888888888888888777776553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.07  E-value=1.1e-08  Score=102.61  Aligned_cols=166  Identities=11%  Similarity=0.037  Sum_probs=144.9

Q ss_pred             CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC
Q 014860          210 SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN  289 (417)
Q Consensus       210 ~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~  289 (417)
                      +..+|+.+-..+.+.|+        +++|++.|++..+.. +-+..+|..+-.+|.+.|++++|.+.|++..+..  +-+
T Consensus         8 ~a~al~nLG~~~~~~G~--------~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~   76 (723)
T 4gyw_A            8 HADSLNNLANIKREQGN--------IEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTF   76 (723)
T ss_dssp             HHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTC
T ss_pred             cHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence            47789999999999999        999999999998864 3357899999999999999999999999987631  245


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014860          290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDE  369 (417)
Q Consensus       290 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  369 (417)
                      ...|..+-.+|...|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++..+.. +-+...|..+...
T Consensus        77 ~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~  154 (723)
T 4gyw_A           77 ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHC  154 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhH
Confidence            789999999999999999999999999875322 67899999999999999999999999999862 2356789999999


Q ss_pred             HHHcCCHhHHHHHHHHHHH
Q 014860          370 ICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       370 ~~~~g~~~~A~~~~~~m~~  388 (417)
                      |...|++++|.+.+++..+
T Consensus       155 l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A          155 LQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHTTCCTTHHHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHH
Confidence            9999999999998887754

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.05  E-value=5e-08  Score=90.69  Aligned_cols=234  Identities=11%  Similarity=-0.002  Sum_probs=174.2

Q ss_pred             HHHHHccCChhHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCC--CCCCC-CHHHHHH
Q 014860          144 TRKLGAAKMYQEMDDVVNQMLATPSFCGT----EALYNTIIYFFAEARKLSRAVYVFKYMKNSRN--LECRP-SIRSYNI  216 (417)
Q Consensus       144 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~g~~p-~~~~~~~  216 (417)
                      ...+...|++++|...++...+.....++    ..++..+...|...|+++.|...+++..+.-.  .+..+ ...+++.
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            34567899999999999999876322133    56788899999999999999999988765310  01111 2567888


Q ss_pred             HHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCCC
Q 014860          217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GIEP-DIFSLNSMIKGYILSNHVNDALRIFHQMGVV---YNYLP  288 (417)
Q Consensus       217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~  288 (417)
                      +...|...|+        +++|.+.|++..+.    +-.+ ...++..+-..|...|++++|.+.+++....   .+.+.
T Consensus       188 lg~~y~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~  259 (378)
T 3q15_A          188 IAGNYDDFKH--------YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL  259 (378)
T ss_dssp             HHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHhCC--------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh
Confidence            9999999999        99999999887652    2111 2357788889999999999999999887541   12233


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH-
Q 014860          289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKG----FVPSSKSYNSLVSALALNGE---VEETVKNLWEMIEKQRPVDF-  360 (417)
Q Consensus       289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~-  360 (417)
                      ...++..+...|.+.|++++|...+++..+..    -......+..+-..|...|+   +++|+.++++   .+..++. 
T Consensus       260 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~  336 (378)
T 3q15_A          260 LPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIE  336 (378)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHH
Confidence            46778889999999999999999999987642    22224456667677777888   7778777776   3222333 


Q ss_pred             HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          361 ITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       361 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      ..+..+...|...|++++|.+.|++..+
T Consensus       337 ~~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          337 ACARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            3567788899999999999999998765

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.03  E-value=9e-08  Score=82.01  Aligned_cols=175  Identities=8%  Similarity=-0.111  Sum_probs=144.3

Q ss_pred             CCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC
Q 014860          209 PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP  288 (417)
Q Consensus       209 p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~  288 (417)
                      .|...|......+...|+        +++|.+.|++..+....++...+..+..++...|++++|.+.++...+.  -+.
T Consensus         5 ~~~~~~~~~g~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~   74 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKN--------YAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYN   74 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCS
T ss_pred             cCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--Ccc
Confidence            466888899999999999        9999999999998764377888888999999999999999999998762  223


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--
Q 014860          289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSS-------KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD--  359 (417)
Q Consensus       289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~--  359 (417)
                      +...|..+...|...|++++|...+++..+.... +.       ..|..+-..+...|++++|.+.|++..+.  .|+  
T Consensus        75 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~  151 (228)
T 4i17_A           75 LANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKW  151 (228)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcc
Confidence            5678899999999999999999999999875322 44       45788888899999999999999999875  465  


Q ss_pred             -HHHHHHHHHHHHHcCCH---------------------------hHHHHHHHHHHHCCCCChhh
Q 014860          360 -FITYRTVLDEICRRGRA---------------------------GEAMKLLKELQNKNLIDGYT  396 (417)
Q Consensus       360 -~~~~~~li~~~~~~g~~---------------------------~~A~~~~~~m~~~~~p~~~t  396 (417)
                       ...|..+...|...|+.                           ++|...+++..+...-+...
T Consensus       152 ~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~  216 (228)
T 4i17_A          152 KTDALYSLGVLFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEI  216 (228)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHH
Confidence             46777888888888877                           88999999888865334433

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.01  E-value=1.1e-07  Score=81.42  Aligned_cols=195  Identities=9%  Similarity=-0.005  Sum_probs=147.8

Q ss_pred             CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860          135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY  214 (417)
Q Consensus       135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~  214 (417)
                      .|+..+......+...|++++|.+.|+...+.... ++...+..+..+|.+.|++++|++.|++..+..    +.+...|
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~   79 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNN-QDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN----YNLANAY   79 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CSHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCC-CCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC----cchHHHH
Confidence            46788888888999999999999999999987753 566777778999999999999999999998751    3356778


Q ss_pred             HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 014860          215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-------FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYL  287 (417)
Q Consensus       215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  287 (417)
                      ..+...+...|+        +++|++.|++..+.. +.+.       ..|..+-..+...|++++|.+.|+...+.   .
T Consensus        80 ~~l~~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~  147 (228)
T 4i17_A           80 IGKSAAYRDMKN--------NQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV---T  147 (228)
T ss_dssp             HHHHHHHHHTTC--------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS---S
T ss_pred             HHHHHHHHHccc--------HHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc---C
Confidence            899999999999        999999999988764 2234       45677777888899999999999998762   3


Q ss_pred             CC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          288 PN---SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       288 ~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      |+   ...|..+...|...     +..+++++...+. .+...|.....  ...+.+++|...+++..+.
T Consensus       148 p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l  209 (228)
T 4i17_A          148 SKKWKTDALYSLGVLFYNN-----GADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTL  209 (228)
T ss_dssp             CHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH
T ss_pred             CCcccHHHHHHHHHHHHHH-----HHHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc
Confidence            54   45666666666543     4445566555432 24555554443  3456689999999998876

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.99  E-value=2.1e-07  Score=82.62  Aligned_cols=243  Identities=14%  Similarity=0.113  Sum_probs=170.4

Q ss_pred             HhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHH
Q 014860          111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLS  190 (417)
Q Consensus       111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~  190 (417)
                      .--.|++..|+.-...+.   . ......-..+.+++...|+++..         .. ..|....+..+...+ ..+   
T Consensus        23 ~fy~G~yq~~i~e~~~~~---~-~~~~~~~~~~~Rs~iAlg~~~~~---------~~-~~~~~~a~~~la~~~-~~~---   84 (310)
T 3mv2_B           23 NYYTGNFVQCLQEIEKFS---K-VTDNTLLFYKAKTLLALGQYQSQ---------DP-TSKLGKVLDLYVQFL-DTK---   84 (310)
T ss_dssp             HHTTTCHHHHTHHHHTSS---C-CCCHHHHHHHHHHHHHTTCCCCC---------CS-SSTTHHHHHHHHHHH-TTT---
T ss_pred             HHHhhHHHHHHHHHHhcC---c-cchHHHHHHHHHHHHHcCCCccC---------CC-CCHHHHHHHHHHHHh-ccc---
Confidence            345788888888443332   1 12234444556788888887642         11 115544555554444 222   


Q ss_pred             HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHhcCC
Q 014860          191 RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI-EPDIFSLNSMIKGYILSNH  269 (417)
Q Consensus       191 ~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~  269 (417)
                       |+..|++..+.   + .++..++..+..++...|+        .++|++++.+....|- .-+...+..++..+.+.|+
T Consensus        85 -a~~~l~~l~~~---~-~~~~~~~~~la~i~~~~g~--------~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r  151 (310)
T 3mv2_B           85 -NIEELENLLKD---K-QNSPYELYLLATAQAILGD--------LDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNN  151 (310)
T ss_dssp             -CCHHHHHTTTT---S-CCCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTC
T ss_pred             -HHHHHHHHHhc---C-CCCcHHHHHHHHHHHHcCC--------HHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCC
Confidence             78888888764   2 4566666788899999999        9999999999876653 2356778888999999999


Q ss_pred             HHHHHHHHHHhhhhCCCCC-----CHHHHHHHHHHHHh--cC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860          270 VNDALRIFHQMGVVYNYLP-----NSFSYDYLIHGLCA--QG--RTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE  340 (417)
Q Consensus       270 ~~~a~~~~~~m~~~~~~~~-----~~~~~~~li~~~~~--~g--~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~  340 (417)
                      .+.|.+.++.|.+.   .|     +..+...|..++..  .|  ++++|..+|+++.+.  .|+..+-..++.++.+.|+
T Consensus       152 ~d~A~k~l~~~~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~  226 (310)
T 3mv2_B          152 VSTASTIFDNYTNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRN  226 (310)
T ss_dssp             HHHHHHHHHHHHHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCC
Confidence            99999999999773   35     35666777766433  34  899999999998765  3554455555668999999


Q ss_pred             HHHHHHHHHHHHHc-----C----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860          341 VEETVKNLWEMIEK-----Q----RPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       341 ~~~A~~~~~~m~~~-----g----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  391 (417)
                      +++|.+.++.+.+.     .    -+-|..+...+|......|+  +|.+++.++.+...
T Consensus       227 ~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P  284 (310)
T 3mv2_B          227 IAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH  284 (310)
T ss_dssp             HHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence            99999999876653     0    13355677567766666776  88999999999874

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.98  E-value=2.5e-07  Score=85.62  Aligned_cols=239  Identities=13%  Similarity=0.020  Sum_probs=169.5

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHcCCCCCCCH----HHHHHHHHHHHHhCCHHHHHHHHHHhHhCC-CCCCC-CCHHHHH
Q 014860          142 IMTRKLGAAKMYQEMDDVVNQMLATPSFCGTE----ALYNTIIYFFAEARKLSRAVYVFKYMKNSR-NLECR-PSIRSYN  215 (417)
Q Consensus       142 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~g~~-p~~~~~~  215 (417)
                      .....+...|++++|...+++....... .+.    ..++.+...+...|++++|...+++..... ..|.. ....++.
T Consensus        19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           19 LRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3444566899999999999998876532 333    256677788899999999999999876531 00100 0123466


Q ss_pred             HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---C
Q 014860          216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GIE--P-DIFSLNSMIKGYILSNHVNDALRIFHQMGVVY---N  285 (417)
Q Consensus       216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~  285 (417)
                      .+...+...|+        +++|.+.+++..+.    +..  | ....+..+-..+...|++++|...+++.....   +
T Consensus        98 ~la~~~~~~G~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~  169 (373)
T 1hz4_A           98 QQSEILFAQGF--------LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQ  169 (373)
T ss_dssp             HHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC
T ss_pred             HHHHHHHHCCC--------HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccC
Confidence            77888999999        99999999887642    322  2 23456677888999999999999999875521   1


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHH----HHHHHHHhcCCHHHHHHHHHHHHHcCCCC-
Q 014860          286 YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP--SSKSYN----SLVSALALNGEVEETVKNLWEMIEKQRPV-  358 (417)
Q Consensus       286 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~----~li~~~~~~g~~~~A~~~~~~m~~~g~~p-  358 (417)
                      ......++..+...+...|++++|...+++.....-.+  ......    ..+..+...|+.++|...+++.......+ 
T Consensus       170 ~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~  249 (373)
T 1hz4_A          170 PQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN  249 (373)
T ss_dssp             GGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred             cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcc
Confidence            11134678888889999999999999999887531111  121111    23345779999999999998877643211 


Q ss_pred             --CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860          359 --DFITYRTVLDEICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       359 --~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  389 (417)
                        ....+..+...+...|++++|...+++....
T Consensus       250 ~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~  282 (373)
T 1hz4_A          250 HFLQGQWRNIARAQILLGEFEPAEIVLEELNEN  282 (373)
T ss_dssp             GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence              1335667788899999999999999987653

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.98  E-value=5.8e-08  Score=74.92  Aligned_cols=127  Identities=9%  Similarity=0.095  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH
Q 014860          176 YNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF  255 (417)
Q Consensus       176 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  255 (417)
                      |..+...+...|++++|..+|+++.+.    .+.+...|..+...+...|+        +++|.++++++.+.+ +.+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~   70 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLGNAYYKQGD--------YDEAIEYYQKALELD-PRSAE   70 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHc----CCcchhHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHC-CCchH
Confidence            444445555555555555555555443    12234444455555555555        555555555544432 22333


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860          256 SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMK  317 (417)
Q Consensus       256 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  317 (417)
                      .+..+...+...|++++|.+.++.+...  .+.+...+..+...+...|++++|...++++.
T Consensus        71 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~  130 (136)
T 2fo7_A           71 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKAL  130 (136)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHccHHHHHHHHHHHH
Confidence            4444444444444444444444444331  11223344444444444444444444444443

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=98.97  E-value=4.8e-08  Score=75.40  Aligned_cols=129  Identities=8%  Similarity=0.089  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHH
Q 014860          139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILF  218 (417)
Q Consensus       139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li  218 (417)
                      .|..+...+...|++++|.++++.+.+...  .+...+..+...+...|++++|...|+++...    .+.+...|..+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l~   76 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP--RSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPRSAEAWYNLG   76 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC--cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH----CCCchHHHHHHH
Confidence            455666677777788888888777776543  45667777777788888888888888877764    134566777777


Q ss_pred             HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860          219 TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       219 ~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      ..+...|+        +++|.++++++.+.. +.+..++..+...+.+.|++++|.+.++.+..
T Consensus        77 ~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~  131 (136)
T 2fo7_A           77 NAYYKQGD--------YDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE  131 (136)
T ss_dssp             HHHHTTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHhcC--------HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence            77888888        888888888777654 33566777777778888888888888877654

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.94  E-value=1.9e-07  Score=89.01  Aligned_cols=266  Identities=10%  Similarity=0.036  Sum_probs=155.0

Q ss_pred             hhHHHHHHhcCCCCCCHHHHHHHHhccC-----ChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhH---HHHH
Q 014860           88 DTQFRCAVSELPPRFNNEELCNVMTLQE-----DPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQE---MDDV  159 (417)
Q Consensus        88 ~~~~~~~l~~~p~~~~~~~ll~~l~~~~-----~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---a~~~  159 (417)
                      ...+.+....  ++..+..+...+...+     ++++|+..|+...+..    +...+..+...|...+..++   +.+.
T Consensus        58 ~~~~~~A~~~--~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~~~~~~~~~~~a~~~  131 (452)
T 3e4b_A           58 EATYRAAADT--SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANG----EGNTLIPLAMLYLQYPHSFPNVNAQQQ  131 (452)
T ss_dssp             ---------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTT----CSSCHHHHHHHHHHCGGGCTTCCHHHH
T ss_pred             HHHHHHHHhC--CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence            3334555544  4556666666454444     7889999999886533    22255556666655544333   3444


Q ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHhCCHH----HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC---Cccchhh
Q 014860          160 VNQMLATPSFCGTEALYNTIIYFFAEARKLS----RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG---KNTYINH  232 (417)
Q Consensus       160 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~----~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g---~~~~~~~  232 (417)
                      +......+    +...+..+...|...+.++    .+..+++.....     .|+  .+..+-..|...|   +      
T Consensus       132 ~~~a~~~g----~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~-----~~~--a~~~Lg~~~~~~g~~~~------  194 (452)
T 3e4b_A          132 ISQWQAAG----YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNT-----TDI--CYVELATVYQKKQQPEQ------  194 (452)
T ss_dssp             HHHHHHHT----CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTT-----CTT--HHHHHHHHHHHTTCHHH------
T ss_pred             HHHHHHCC----CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcC-----CHH--HHHHHHHHHHHcCCccc------
Confidence            44444332    3345666667777776443    344444444332     233  6667777777777   5      


Q ss_pred             hhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHH-H--HhcCC
Q 014860          233 VYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS----NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHG-L--CAQGR  305 (417)
Q Consensus       233 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~-~--~~~g~  305 (417)
                        .++|++.|++..+.| .++...+..+-..|...    ++.++|.+.|+...     +-+...+..|-.. |  ...++
T Consensus       195 --~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-----~g~~~a~~~Lg~~~~~~~~~~d  266 (452)
T 3e4b_A          195 --QAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-----PGYPASWVSLAQLLYDFPELGD  266 (452)
T ss_dssp             --HHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-----GGSTHHHHHHHHHHHHSGGGCC
T ss_pred             --HHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-----CCCHHHHHHHHHHHHhCCCCCC
Confidence              777888888777776 45555555555555444    57778888777765     1344445555444 3  35677


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCH
Q 014860          306 TKNARELCDEMKRKGFVPSSKSYNSLVSALALNG-----EVEETVKNLWEMIEKQRPVDFITYRTVLDEICR----RGRA  376 (417)
Q Consensus       306 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~  376 (417)
                      +++|.++|++..+.|   +...+..|-..|. .|     +.++|.++|++.. .|   +...+..|-..|..    ..+.
T Consensus       267 ~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~  338 (452)
T 3e4b_A          267 VEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYP  338 (452)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCH
T ss_pred             HHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCH
Confidence            888888888777766   5666666666666 44     7778887777766 33   55566666655554    3377


Q ss_pred             hHHHHHHHHHHHCCCC
Q 014860          377 GEAMKLLKELQNKNLI  392 (417)
Q Consensus       377 ~~A~~~~~~m~~~~~p  392 (417)
                      ++|...|++..+.|.+
T Consensus       339 ~~A~~~~~~Aa~~g~~  354 (452)
T 3e4b_A          339 QKALDHLLTAARNGQN  354 (452)
T ss_dssp             HHHHHHHHHHHTTTCT
T ss_pred             HHHHHHHHHHHhhChH
Confidence            7777777777776643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.91  E-value=1.1e-07  Score=84.96  Aligned_cols=212  Identities=10%  Similarity=0.042  Sum_probs=152.1

Q ss_pred             ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCC-CCCCCCC-HHHHHHHHHHHHhcCCccc
Q 014860          152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSR-NLECRPS-IRSYNILFTAFLSRGKNTY  229 (417)
Q Consensus       152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~g~~p~-~~~~~~li~~~~~~g~~~~  229 (417)
                      ++++|.+.+...                ...|...|++++|...|++..+.. ..|-+++ ..+|+.+...|...|+   
T Consensus        32 ~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~---   92 (292)
T 1qqe_A           32 KFEEAADLCVQA----------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN---   92 (292)
T ss_dssp             HHHHHHHHHHHH----------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC---
T ss_pred             cHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC---
Confidence            477777777665                456788999999999998776530 0011222 5689999999999999   


Q ss_pred             hhhhhHHHHHHHHHHHHHCCC---CCC--HHHHHHHHHHHHhc-CCHHHHHHHHHHhhhhCCCCCC----HHHHHHHHHH
Q 014860          230 INHVYMETIRCLFKQMVNDGI---EPD--IFSLNSMIKGYILS-NHVNDALRIFHQMGVVYNYLPN----SFSYDYLIHG  299 (417)
Q Consensus       230 ~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~  299 (417)
                           +++|+..|++..+...   .+.  ..+++.+-..|... |++++|...|++..+...-..+    ..++..+...
T Consensus        93 -----~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~  167 (292)
T 1qqe_A           93 -----SVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADL  167 (292)
T ss_dssp             -----HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence                 9999999988764211   111  45788888999996 9999999999987652110111    4578889999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHH
Q 014860          300 LCAQGRTKNARELCDEMKRKGFVPSS------KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF------ITYRTVL  367 (417)
Q Consensus       300 ~~~~g~~~~A~~l~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~~~~~li  367 (417)
                      +.+.|++++|...|++..+.......      ..|..+..++...|++++|...|++..+.  .|+.      ..+..++
T Consensus       168 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~  245 (292)
T 1qqe_A          168 KALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLI  245 (292)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHH
Confidence            99999999999999999886433221      25777888999999999999999998764  3332      1344556


Q ss_pred             HHHH--HcCCHhHHHHHHHHHHHC
Q 014860          368 DEIC--RRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       368 ~~~~--~~g~~~~A~~~~~~m~~~  389 (417)
                      .+|.  ..+++++|+..|+.+...
T Consensus       246 ~~~~~~~~~~~~~A~~~~~~~~~l  269 (292)
T 1qqe_A          246 DAVNEGDSEQLSEHCKEFDNFMRL  269 (292)
T ss_dssp             HHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             HHHHcCCHHHHHHHHHHhccCCcc
Confidence            6664  456788888888766553

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.91  E-value=1.3e-07  Score=83.96  Aligned_cols=181  Identities=11%  Similarity=0.069  Sum_probs=139.0

Q ss_pred             HHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHh
Q 014860          120 CLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYM  199 (417)
Q Consensus       120 A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m  199 (417)
                      |+..|+......  .++..++..+..++...|++++|++++...+..+....+...+..++..+.+.|+.+.|.+.+++|
T Consensus        85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~  162 (310)
T 3mv2_B           85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY  162 (310)
T ss_dssp             CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            778888775443  566777778889999999999999999999776642257788999999999999999999999999


Q ss_pred             HhCCCCCCCC-----CHHHHHHHHHHHHh--cC--CccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860          200 KNSRNLECRP-----SIRSYNILFTAFLS--RG--KNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHV  270 (417)
Q Consensus       200 ~~~~~~g~~p-----~~~~~~~li~~~~~--~g--~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  270 (417)
                      .+.     .|     +..+...+..+++.  .|  +        ..+|..+|+++.+.  .|+..+-..++.++.+.|++
T Consensus       163 ~~~-----~~d~~~~~d~~l~~Laea~v~l~~g~~~--------~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~  227 (310)
T 3mv2_B          163 TNA-----IEDTVSGDNEMILNLAESYIKFATNKET--------ATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNI  227 (310)
T ss_dssp             HHH-----SCHHHHHHHHHHHHHHHHHHHHHHTCST--------TTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCH
T ss_pred             Hhc-----CccccccchHHHHHHHHHHHHHHhCCcc--------HHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCH
Confidence            876     56     35666667766433  34  5        89999999999765  35544445556689999999


Q ss_pred             HHHHHHHHHhhhhC----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860          271 NDALRIFHQMGVVY----N----YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK  319 (417)
Q Consensus       271 ~~a~~~~~~m~~~~----~----~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  319 (417)
                      ++|++.++.+.+..    .    -+-|..+.-.+|......|+  +|.+++.++.+.
T Consensus       228 ~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          228 AEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            99999999765421    0    13466677566666666777  889999999986

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.86  E-value=1.6e-07  Score=83.96  Aligned_cols=203  Identities=8%  Similarity=0.023  Sum_probs=142.8

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcC---CCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC----HHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQ---PRFRH-DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT----EAL  175 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~---~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~  175 (417)
                      |+.....+...|++++|++.|......   .+-++ ...+|+.+..++...|++++|...++...+......+    ..+
T Consensus        40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~  119 (292)
T 1qqe_A           40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF  119 (292)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            344566778899999999999887542   12111 2578899999999999999999999988764321122    457


Q ss_pred             HHHHHHHHHHh-CCHHHHHHHHHHhHhCCC-CCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC
Q 014860          176 YNTIIYFFAEA-RKLSRAVYVFKYMKNSRN-LECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP  252 (417)
Q Consensus       176 ~~~li~~~~~~-g~~~~a~~~~~~m~~~~~-~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p  252 (417)
                      ++.+...|... |++++|+..|++..+... .+... ...+|+.+...+...|+        +++|+..|++..+.....
T Consensus       120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~~~~  191 (292)
T 1qqe_A          120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQ--------YIEASDIYSKLIKSSMGN  191 (292)
T ss_dssp             HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCC--------HHHHHHHHHHHHHHHhcC
Confidence            88999999996 999999999998876410 00000 14578899999999999        999999999999865332


Q ss_pred             CH------HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHH
Q 014860          253 DI------FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNS------FSYDYLIHGLC--AQGRTKNARELCDEMK  317 (417)
Q Consensus       253 ~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~------~~~~~li~~~~--~~g~~~~A~~l~~~m~  317 (417)
                      ..      ..|..+..++...|++++|...|++..+   +.|+.      ..+..++.++.  ..+++++|...|+.+.
T Consensus       192 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~---l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~  267 (292)
T 1qqe_A          192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS---EDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM  267 (292)
T ss_dssp             TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC---C---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred             CcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence            22      1567777888899999999999998865   22321      12344455554  3455666776665543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.86  E-value=2.5e-07  Score=81.02  Aligned_cols=186  Identities=12%  Similarity=0.023  Sum_probs=122.8

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-C---HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860          171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-S---IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV  246 (417)
Q Consensus       171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~---~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~  246 (417)
                      .+...+-.+...+.+.|++++|+..|+++.+.     .| +   ...+..+..++...|+        +++|...|++..
T Consensus        13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-----~p~~~~~~~a~~~lg~~~~~~~~--------~~~A~~~~~~~l   79 (261)
T 3qky_A           13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTY-----GRTHEWAADAQFYLARAYYQNKE--------YLLAASEYERFI   79 (261)
T ss_dssp             SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGG-----CSCSTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh-----CCCCcchHHHHHHHHHHHHHhCc--------HHHHHHHHHHHH
Confidence            56677788888899999999999999999885     23 3   6788889999999999        999999999998


Q ss_pred             HCCC-C-CCHHHHHHHHHHHHh--------cCCHHHHHHHHHHhhhhCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860          247 NDGI-E-PDIFSLNSMIKGYIL--------SNHVNDALRIFHQMGVVYNYLPNS-FSYDYLIHGLCAQGRTKNARELCDE  315 (417)
Q Consensus       247 ~~g~-~-p~~~~~~~li~~~~~--------~g~~~~a~~~~~~m~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~l~~~  315 (417)
                      +... . .....+..+..++..        .|++++|...|++..+..   |+. .....+              ..+..
T Consensus        80 ~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~---p~~~~~~~a~--------------~~~~~  142 (261)
T 3qky_A           80 QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY---PNHELVDDAT--------------QKIRE  142 (261)
T ss_dssp             HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC---TTCTTHHHHH--------------HHHHH
T ss_pred             HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC---cCchhHHHHH--------------HHHHH
Confidence            7531 1 224566677777878        899999999999987643   321 122111              11111


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHHc----------CCHhHHHHHH
Q 014860          316 MKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRP-V-DFITYRTVLDEICRR----------GRAGEAMKLL  383 (417)
Q Consensus       316 m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~----------g~~~~A~~~~  383 (417)
                      +...    -...+..+...|.+.|++++|...|+++.+..-. + ....+..+..+|...          |++++|...|
T Consensus       143 ~~~~----~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~  218 (261)
T 3qky_A          143 LRAK----LARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELY  218 (261)
T ss_dssp             HHHH----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHH
T ss_pred             HHHH----HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHH
Confidence            1100    0112445556666777777777777776654110 1 233555555666544          6667777777


Q ss_pred             HHHHHCC
Q 014860          384 KELQNKN  390 (417)
Q Consensus       384 ~~m~~~~  390 (417)
                      +++.+..
T Consensus       219 ~~~~~~~  225 (261)
T 3qky_A          219 ERLLQIF  225 (261)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHC
Confidence            7776654

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.84  E-value=3.6e-07  Score=80.09  Aligned_cols=213  Identities=5%  Similarity=-0.089  Sum_probs=139.0

Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHH
Q 014860          134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIR  212 (417)
Q Consensus       134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~  212 (417)
                      +.+...+-.....+.+.|++++|.+.|+.+.+..+..+. ...+..+..+|.+.|++++|+..|+...+... +.+....
T Consensus        12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~   90 (261)
T 3qky_A           12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQ-IDPRVPQ   90 (261)
T ss_dssp             CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCC-CCchhHH
Confidence            346777777888889999999999999999887642121 67888899999999999999999999988510 1112245


Q ss_pred             HHHHHHHHHHh--------cCCccchhhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhh
Q 014860          213 SYNILFTAFLS--------RGKNTYINHVYMETIRCLFKQMVNDGIEPDI-FSLNSMIKGYILSNHVNDALRIFHQMGVV  283 (417)
Q Consensus       213 ~~~~li~~~~~--------~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~  283 (417)
                      .+..+..++..        .|+        +++|...|++..+..  |+. ....++              ..+..... 
T Consensus        91 a~~~lg~~~~~~~~~~~~~~~~--------~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~-  145 (261)
T 3qky_A           91 AEYERAMCYYKLSPPYELDQTD--------TRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRA-  145 (261)
T ss_dssp             HHHHHHHHHHHHCCCTTSCCHH--------HHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHH-
T ss_pred             HHHHHHHHHHHhcccccccchh--------HHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHH-
Confidence            67778888888        888        999999999998763  332 222221              11111111 


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhc----------CCHHHHHHHHHHH
Q 014860          284 YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV-P-SSKSYNSLVSALALN----------GEVEETVKNLWEM  351 (417)
Q Consensus       284 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~~~~~li~~~~~~----------g~~~~A~~~~~~m  351 (417)
                          .-...+..+...|...|++++|...|+++.+.... + ....+..+..+|...          |++++|...|+++
T Consensus       146 ----~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~  221 (261)
T 3qky_A          146 ----KLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERL  221 (261)
T ss_dssp             ----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHH
T ss_pred             ----HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHH
Confidence                00112455666677777888888777777664211 1 234566666677655          7778888888777


Q ss_pred             HHcCCCCCH----HHHHHHHHHHHHcCCHhH
Q 014860          352 IEKQRPVDF----ITYRTVLDEICRRGRAGE  378 (417)
Q Consensus       352 ~~~g~~p~~----~~~~~li~~~~~~g~~~~  378 (417)
                      .+.  .|+.    .....+-..+.+.++.++
T Consensus       222 ~~~--~p~~~~~~~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          222 LQI--FPDSPLLRTAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHH--CTTCTHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHH--CCCChHHHHHHHHHHHHHHHHHHhhh
Confidence            765  2332    234444444555554443

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.78  E-value=1.5e-06  Score=82.74  Aligned_cols=260  Identities=8%  Similarity=-0.020  Sum_probs=175.6

Q ss_pred             CCCCHHHHHHHHhccCChh---HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHH
Q 014860          100 PRFNNEELCNVMTLQEDPL---VCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALY  176 (417)
Q Consensus       100 ~~~~~~~ll~~l~~~~~~~---~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~  176 (417)
                      +...+..+...|...+...   .+++.+......    -+......+...+...+.++++.+....+.+.-.. .+...+
T Consensus       105 ~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~----g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~-~~~~a~  179 (452)
T 3e4b_A          105 EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAA----GYPEAGLAQVLLYRTQGTYDQHLDDVERICKAALN-TTDICY  179 (452)
T ss_dssp             CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHH----TCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTT-TCTTHH
T ss_pred             CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHc-CCHHHH
Confidence            3346666777775554433   344444444221    23556666667777777555544442222221111 233378


Q ss_pred             HHHHHHHHHhC---CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc----CCccchhhhhHHHHHHHHHHHHHCC
Q 014860          177 NTIIYFFAEAR---KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR----GKNTYINHVYMETIRCLFKQMVNDG  249 (417)
Q Consensus       177 ~~li~~~~~~g---~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~----g~~~~~~~~~~~~a~~~~~~m~~~g  249 (417)
                      ..|...|.+.|   +.++|++.|+...+.+    .++...+..+-..|...    ++        .++|++.|++.. .|
T Consensus       180 ~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g----~~~a~~~~~Lg~~y~~g~~~~~d--------~~~A~~~~~~aa-~g  246 (452)
T 3e4b_A          180 VELATVYQKKQQPEQQAELLKQMEAGVSRG----TVTAQRVDSVARVLGDATLGTPD--------EKTAQALLEKIA-PG  246 (452)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHTT----CSCHHHHHHHHHHHTCGGGSSCC--------HHHHHHHHHHHG-GG
T ss_pred             HHHHHHHHHcCCcccHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHhCCCCCCCC--------HHHHHHHHHHHc-CC
Confidence            88888999999   8999999999998863    45666556666666443    56        899999999887 33


Q ss_pred             CCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHCCC
Q 014860          250 IEPDIFSLNSMIKG-Y--ILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG-----RTKNARELCDEMKRKGF  321 (417)
Q Consensus       250 ~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A~~l~~~m~~~g~  321 (417)
                         +...+..+-.. |  ...+++++|.+.|++..+ .|   +...+..|-..|. .|     ++++|..+|++.. .| 
T Consensus       247 ---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~-~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g-  316 (452)
T 3e4b_A          247 ---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA-AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR-  316 (452)
T ss_dssp             ---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT-
T ss_pred             ---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH-CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC-
Confidence               45555555555 3  468899999999999887 33   6667777777776 55     8999999999877 43 


Q ss_pred             CCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCC
Q 014860          322 VPSSKSYNSLVSALAL----NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR----RGRAGEAMKLLKELQNKNLI  392 (417)
Q Consensus       322 ~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~p  392 (417)
                        +...+..|-..|..    ..+.++|..+|++..+.|.   ......|-..|..    ..+.++|...|+.-.+.|.+
T Consensus       317 --~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~  390 (452)
T 3e4b_A          317 --EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP  390 (452)
T ss_dssp             --CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred             --CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence              67777777777776    3489999999999888763   3344555555553    45788999999888888754

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.77  E-value=6.8e-07  Score=75.50  Aligned_cols=124  Identities=8%  Similarity=0.067  Sum_probs=61.9

Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN  258 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  258 (417)
                      +..+|.+.|++++|+..|++..+..    +-+...|..+...+...|+        +++|+..|++..+.. +-+..++.
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-P~~~~a~~  126 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKA----PNNVDCLEACAEMQVCRGQ--------EKDALRMYEKILQLE-ADNLAANI  126 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHcC-CCCHHHHH
Confidence            5566666666666666666666541    2345566666666666666        666666666666543 23445555


Q ss_pred             HHHHHHHhcCC--HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          259 SMIKGYILSNH--VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR  318 (417)
Q Consensus       259 ~li~~~~~~g~--~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~  318 (417)
                      .+-..|...|+  .+.+...+.....   ..|....+...-.++...|++++|...|++..+
T Consensus       127 ~lg~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~  185 (208)
T 3urz_A          127 FLGNYYYLTAEQEKKKLETDYKKLSS---PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL  185 (208)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHC---C---CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHhC---CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            55555544432  2223333333321   111112222233334445556666666665554

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.76  E-value=4.8e-07  Score=80.62  Aligned_cols=164  Identities=9%  Similarity=-0.003  Sum_probs=80.2

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN  215 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~  215 (417)
                      +...+..+...+.+.|++++|...++...+..+  .+...+..+...|.+.|++++|...|++....     .|+.....
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~-----~p~~~~~~  188 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSN--QNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ-----DQDTRYQG  188 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--SCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG-----GCSHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHCCCHHHHHHHHHhCchh-----hcchHHHH
Confidence            344444455555555666666666655555443  34455555555566666666666666555443     33332222


Q ss_pred             HHH-HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH
Q 014860          216 ILF-TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYD  294 (417)
Q Consensus       216 ~li-~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  294 (417)
                      ... ..+...++        .++|.+.+++..+.. +.+...+..+-..+...|++++|.+.|.++.+...-..+...+.
T Consensus       189 ~~~~~~l~~~~~--------~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~  259 (287)
T 3qou_A          189 LVAQIELLXQAA--------DTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRX  259 (287)
T ss_dssp             HHHHHHHHHHHT--------SCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHH
T ss_pred             HHHHHHHHhhcc--------cCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHH
Confidence            211 12333344        444555555554443 23444555555555555555555555555544211111234455


Q ss_pred             HHHHHHHhcCCHHHHHHHHHH
Q 014860          295 YLIHGLCAQGRTKNARELCDE  315 (417)
Q Consensus       295 ~li~~~~~~g~~~~A~~l~~~  315 (417)
                      .+...+...|+.++|...+++
T Consensus       260 ~l~~~~~~~g~~~~a~~~~r~  280 (287)
T 3qou_A          260 TFQEILAALGTGDALASXYRR  280 (287)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCCCcHHHHHHH
Confidence            555555555555555555444

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.75  E-value=1.5e-07  Score=94.63  Aligned_cols=173  Identities=9%  Similarity=-0.038  Sum_probs=116.7

Q ss_pred             hccCChhHHHHHHHHhh--------cCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860          112 TLQEDPLVCLELFNWAS--------KQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF  183 (417)
Q Consensus       112 ~~~~~~~~A~~~~~~~~--------~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~  183 (417)
                      ...+++++|++.|+.+.        +..  +.+...+..+..++...|++++|.+.+++..+...  .+...|..+..+|
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~  477 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERVG--WRWRLVWYRAVAE  477 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC--CCHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc--chHHHHHHHHHHH
Confidence            56677888888887775        222  44566777777777778888888888877777653  4667777777777


Q ss_pred             HHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860          184 AEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG  263 (417)
Q Consensus       184 ~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  263 (417)
                      .+.|++++|++.|++..+..    +-+...|..+...+.+.|+        +++ ++.|++..+.. +-+...|..+-.+
T Consensus       478 ~~~g~~~~A~~~~~~al~l~----P~~~~~~~~lg~~~~~~g~--------~~~-~~~~~~al~~~-P~~~~a~~~lg~~  543 (681)
T 2pzi_A          478 LLTGDYDSATKHFTEVLDTF----PGELAPKLALAATAELAGN--------TDE-HKFYQTVWSTN-DGVISAAFGLARA  543 (681)
T ss_dssp             HHHTCHHHHHHHHHHHHHHS----TTCSHHHHHHHHHHHHHTC--------CCT-TCHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhC----CCChHHHHHHHHHHHHcCC--------hHH-HHHHHHHHHhC-CchHHHHHHHHHH
Confidence            78888888888887777641    2345667777777777777        677 77777776654 3356677777777


Q ss_pred             HHhcCCHHHHHHHHHHhhhhCCCCCC-HHHHHHHHHHHHhcCC
Q 014860          264 YILSNHVNDALRIFHQMGVVYNYLPN-SFSYDYLIHGLCAQGR  305 (417)
Q Consensus       264 ~~~~g~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~  305 (417)
                      +.+.|++++|.+.|++..+   ..|+ ...|..+..++...++
T Consensus       544 ~~~~g~~~~A~~~~~~al~---l~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEVPP---TSRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTTCHHHHHHHHHTSCT---TSTTHHHHHHHHHHHTC----
T ss_pred             HHHcCCHHHHHHHHHhhcc---cCcccHHHHHHHHHHHHccCC
Confidence            7788888888877777754   2343 4555556666554443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.73  E-value=1.5e-06  Score=74.37  Aligned_cols=182  Identities=8%  Similarity=0.018  Sum_probs=114.9

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH----
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSI----  211 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~----  211 (417)
                      ...+-.+...+.+.|++++|...|+.+.+..+..+. ...+..+..+|.+.|++++|+..|+++.+.     .|+.    
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~-----~P~~~~~~   78 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL-----NPTHPNID   78 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTTCTTHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----CcCCCcHH
Confidence            344455556677778888888888877765432121 356667777777888888888888877764     2221    


Q ss_pred             HHHHHHHHHHHh------------------cCCccchhhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHH
Q 014860          212 RSYNILFTAFLS------------------RGKNTYINHVYMETIRCLFKQMVNDGIEPDI-FSLNSMIKGYILSNHVND  272 (417)
Q Consensus       212 ~~~~~li~~~~~------------------~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~  272 (417)
                      ..+..+..++..                  .|+        .++|...|+++.+..  |+. ..+.+....         
T Consensus        79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~~l~~~--P~~~~a~~a~~~l---------  139 (225)
T 2yhc_A           79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQ--------ARAAFSDFSKLVRGY--PNSQYTTDATKRL---------  139 (225)
T ss_dssp             HHHHHHHHHHHHHHC--------------CCHH--------HHHHHHHHHHHHTTC--TTCTTHHHHHHHH---------
T ss_pred             HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHH--------HHHHHHHHHHHHHHC--cCChhHHHHHHHH---------
Confidence            233333333333                  455        999999999999763  443 233221110         


Q ss_pred             HHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 014860          273 ALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS----SKSYNSLVSALALNGEVEETVKNL  348 (417)
Q Consensus       273 a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~  348 (417)
                       ..+...+..         ..-.+...|.+.|++++|...|+++.+.-  |+    ...+..+..+|.+.|+.++|.+.+
T Consensus       140 -~~~~~~~~~---------~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~  207 (225)
T 2yhc_A          140 -VFLKDRLAK---------YEYSVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVA  207 (225)
T ss_dssp             -HHHHHHHHH---------HHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             -HHHHHHHHH---------HHHHHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHH
Confidence             011111111         12345667888889999999998888752  33    256778888888999999999998


Q ss_pred             HHHHHc
Q 014860          349 WEMIEK  354 (417)
Q Consensus       349 ~~m~~~  354 (417)
                      +.+...
T Consensus       208 ~~l~~~  213 (225)
T 2yhc_A          208 KIIAAN  213 (225)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            888776

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.72  E-value=4.1e-06  Score=70.90  Aligned_cols=178  Identities=11%  Similarity=-0.045  Sum_probs=145.6

Q ss_pred             HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--
Q 014860          191 RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN--  268 (417)
Q Consensus       191 ~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--  268 (417)
                      +|.+.|++..+.      -+...+..+-..|...++        .++|++.|++..+.|   +...+..|-..|.. +  
T Consensus         4 eA~~~~~~aa~~------g~~~a~~~lg~~~~~~~~--------~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~   65 (212)
T 3rjv_A            4 EPGSQYQQQAEA------GDRRAQYYLADTWVSSGD--------YQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQ   65 (212)
T ss_dssp             CTTHHHHHHHHT------TCHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STT
T ss_pred             hHHHHHHHHHHC------CCHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCC
Confidence            467788888775      278888999999999999        999999999999876   56777777777877 6  


Q ss_pred             --CHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----
Q 014860          269 --HVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNARELCDEMKRKGFV-PSSKSYNSLVSALAL----  337 (417)
Q Consensus       269 --~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~~~~~li~~~~~----  337 (417)
                        +.++|.+.|+...+ .   -+...+..|-..|..    .+++++|.++|++..+.|.. .+...+..|-..|..    
T Consensus        66 ~~~~~~A~~~~~~A~~-~---g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~  141 (212)
T 3rjv_A           66 QADYPQARQLAEKAVE-A---GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHG  141 (212)
T ss_dssp             SCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSS
T ss_pred             CCCHHHHHHHHHHHHH-C---CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCC
Confidence              89999999999977 3   467778888888877    88999999999999887531 126788889899988    


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-----CHhHHHHHHHHHHHCCCC
Q 014860          338 NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR-G-----RAGEAMKLLKELQNKNLI  392 (417)
Q Consensus       338 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~~~p  392 (417)
                      .++.++|..+|++..+.  ..+...+..|-..|... |     +.++|...|+...+.|.+
T Consensus       142 ~~d~~~A~~~~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~  200 (212)
T 3rjv_A          142 PEDDVKASEYFKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD  200 (212)
T ss_dssp             SCCHHHHHHHHHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred             CCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence            88999999999999887  23455677777777654 3     899999999999998854

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.72  E-value=2.3e-07  Score=76.09  Aligned_cols=60  Identities=13%  Similarity=0.055  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 014860          291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP-SSKSYNSLVSALALNGEVEETVKNLWE  350 (417)
Q Consensus       291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~  350 (417)
                      ..+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|...|++
T Consensus       109 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~  169 (176)
T 2r5s_A          109 ELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR  169 (176)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            333444444444444444444444443332111 123334444444444444444444433

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.71  E-value=1.4e-05  Score=71.40  Aligned_cols=224  Identities=10%  Similarity=0.005  Sum_probs=145.5

Q ss_pred             HhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC--ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH----H
Q 014860          111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAK--MYQEMDDVVNQMLATPSFCGTEALYNTIIYFF----A  184 (417)
Q Consensus       111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~----~  184 (417)
                      .......++|+++++.+....  +-+..+|+.--.++...+  +++++++.++.+....+  .+..+|+.--..+    .
T Consensus        43 ~~~~e~s~~aL~~t~~~L~~n--P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP--k~y~aW~~R~~iL~~~~~  118 (306)
T 3dra_A           43 MKAEEYSERALHITELGINEL--ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE--KNYQIWNYRQLIIGQIME  118 (306)
T ss_dssp             HHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT--TCCHHHHHHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHC--cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc--ccHHHHHHHHHHHHHHHH
Confidence            344555678888888887544  446667777777777777  88888888888887665  4556666555444    4


Q ss_pred             Hh---CCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHH--HHHHHHHHHHHCCCCCCHHHHHH
Q 014860          185 EA---RKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYME--TIRCLFKQMVNDGIEPDIFSLNS  259 (417)
Q Consensus       185 ~~---g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~  259 (417)
                      ..   +++++++.+++.+.+.    -+-+..+|+.-.-.+.+.|.        ++  ++++.++++.+.. .-|-..|+-
T Consensus       119 ~l~~~~~~~~EL~~~~~~l~~----~pkny~aW~~R~~vl~~l~~--------~~~~~EL~~~~~~i~~d-~~N~sAW~~  185 (306)
T 3dra_A          119 LNNNDFDPYREFDILEAMLSS----DPKNHHVWSYRKWLVDTFDL--------HNDAKELSFVDKVIDTD-LKNNSAWSH  185 (306)
T ss_dssp             HTTTCCCTHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------TTCHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             hccccCCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcc--------cChHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            55   6788888888888875    25577788887777777777        66  7888888888765 346667765


Q ss_pred             HHHHHHhcCC------HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCCHHHHHH
Q 014860          260 MIKGYILSNH------VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKN-ARELCDEMKRKG--FVPSSKSYNS  330 (417)
Q Consensus       260 li~~~~~~g~------~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g--~~p~~~~~~~  330 (417)
                      -...+.+.|.      ++++++.++.+...  -+-|...|+.+-..+.+.|+... +..+..+..+.+  -..+...+..
T Consensus       186 R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~--~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~  263 (306)
T 3dra_A          186 RFFLLFSKKHLATDNTIDEELNYVKDKIVK--CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALET  263 (306)
T ss_dssp             HHHHHHSSGGGCCHHHHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHH
T ss_pred             HHHHHHhccccchhhhHHHHHHHHHHHHHh--CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHH
Confidence            5555555554      66666666666541  13466666666666666665333 344444443322  1225556666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 014860          331 LVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      +...|.+.|+.++|.++++.+.+
T Consensus       264 la~~~~~~~~~~~A~~~~~~l~~  286 (306)
T 3dra_A          264 LAKIYTQQKKYNESRTVYDLLKS  286 (306)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHccCCHHHHHHHHHHHHh
Confidence            66666666666666666666654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.71  E-value=2e-07  Score=93.63  Aligned_cols=173  Identities=10%  Similarity=-0.016  Sum_probs=142.6

Q ss_pred             HccCChhHHHHHHHHHH--------cCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH
Q 014860          148 GAAKMYQEMDDVVNQML--------ATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT  219 (417)
Q Consensus       148 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~  219 (417)
                      ...|++++|.+.+++..        +...  .+...+..+...|.+.|++++|++.|++..+.    -+.+...|..+-.
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p--~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~----~p~~~~a~~~lg~  475 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFS--ESVELPLMEVRALLDLGDVAKATRKLDDLAER----VGWRWRLVWYRAV  475 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCT--TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----HCCCHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccc--cchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc----CcchHHHHHHHHH
Confidence            68899999999999998        4332  56788999999999999999999999999875    2446788999999


Q ss_pred             HHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHH
Q 014860          220 AFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHG  299 (417)
Q Consensus       220 ~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~  299 (417)
                      .+...|+        +++|++.|++..+.. +-+...+..+-.+|.+.|++++ .+.|++..+..  +.+...|..+..+
T Consensus       476 ~~~~~g~--------~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~  543 (681)
T 2pzi_A          476 AELLTGD--------YDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARA  543 (681)
T ss_dssp             HHHHHTC--------HHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred             HHHHcCC--------HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHH
Confidence            9999999        999999999998765 3467788899999999999999 99999887621  3467789999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCC
Q 014860          300 LCAQGRTKNARELCDEMKRKGFVPS-SKSYNSLVSALALNGE  340 (417)
Q Consensus       300 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~~~~~li~~~~~~g~  340 (417)
                      +.+.|++++|.+.|++..+.  .|+ ...+..+..++...|+
T Consensus       544 ~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          544 RSAEGDRVGAVRTLDEVPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHHTTCHHHHHHHHHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred             HHHcCCHHHHHHHHHhhccc--CcccHHHHHHHHHHHHccCC
Confidence            99999999999999988764  455 5677777777766554

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.71  E-value=7.1e-07  Score=87.70  Aligned_cols=152  Identities=10%  Similarity=-0.058  Sum_probs=118.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860          235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD  314 (417)
Q Consensus       235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~  314 (417)
                      .++|.+.|++..+.. +-+...+..+-..|...|++++|.+.+++..+.  -+.+...|..+...|...|++++|.+.++
T Consensus         5 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~   81 (568)
T 2vsy_A            5 GPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL--HPGHPEAVARLGRVRWTQQRHAEAAVLLQ   81 (568)
T ss_dssp             -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--STTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            889999999987664 345788999999999999999999999998762  23467889999999999999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCHhHHHHHHHHHHHCCC
Q 014860          315 EMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR---GRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       315 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~~~~~m~~~~~  391 (417)
                      +..+.. +-+...+..+..+|.+.|++++|.+.+++..+.. +-+...+..+...+...   |+.++|.+.+++..+.+.
T Consensus        82 ~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p  159 (568)
T 2vsy_A           82 QASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV  159 (568)
T ss_dssp             HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred             HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence            998764 2367899999999999999999999999998862 34577888999999999   999999999999988765

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.71  E-value=7.2e-06  Score=73.25  Aligned_cols=234  Identities=7%  Similarity=-0.015  Sum_probs=181.2

Q ss_pred             cCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC--CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHH----Hh
Q 014860          150 AKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR--KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAF----LS  223 (417)
Q Consensus       150 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~----~~  223 (417)
                      ...-++|.++.+.++...+  .+..+|+.--..+...|  ++++++++++.+...    .+-+..+|+.--..+    ..
T Consensus        46 ~e~s~~aL~~t~~~L~~nP--~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~----nPk~y~aW~~R~~iL~~~~~~  119 (306)
T 3dra_A           46 EEYSERALHITELGINELA--SHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD----NEKNYQIWNYRQLIIGQIMEL  119 (306)
T ss_dssp             TCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH----CTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHCc--HHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH----CcccHHHHHHHHHHHHHHHHh
Confidence            3444689999999988765  56778888888888888  999999999999986    234566777755555    44


Q ss_pred             c---CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 014860          224 R---GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN--DALRIFHQMGVVYNYLPNSFSYDYLIH  298 (417)
Q Consensus       224 ~---g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~~~~~~~~~~li~  298 (417)
                      .   ++        +++++++++.+.+.. +-+-.+|+----.+.+.|.++  ++++.++.+.+. + .-|-..|+.-..
T Consensus       120 l~~~~~--------~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~  188 (306)
T 3dra_A          120 NNNDFD--------PYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFF  188 (306)
T ss_dssp             TTTCCC--------THHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred             ccccCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHH
Confidence            4   56        899999999999865 457788888777777888888  999999999873 2 367888888777


Q ss_pred             HHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHH
Q 014860          299 GLCAQGR------TKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEE-TVKNLWEMIEKQ--RPVDFITYRTVLDE  369 (417)
Q Consensus       299 ~~~~~g~------~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~g--~~p~~~~~~~li~~  369 (417)
                      .+.+.|.      ++++++.++.+...... |...|+-+-..+.+.|+... +..+..++.+.+  -..+...+..+...
T Consensus       189 ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~  267 (306)
T 3dra_A          189 LLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKI  267 (306)
T ss_dssp             HHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHH
T ss_pred             HHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHH
Confidence            7777776      89999999999887554 88999999889988888444 445666655432  24577889999999


Q ss_pred             HHHcCCHhHHHHHHHHHHHC-CCCChhhHHHHH
Q 014860          370 ICRRGRAGEAMKLLKELQNK-NLIDGYTYTKLL  401 (417)
Q Consensus       370 ~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll  401 (417)
                      |.+.|+.++|.++++.+.+. +.....-|+-..
T Consensus       268 ~~~~~~~~~A~~~~~~l~~~~Dpir~~yW~~~~  300 (306)
T 3dra_A          268 YTQQKKYNESRTVYDLLKSKYNPIRSNFWDYQI  300 (306)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HHccCCHHHHHHHHHHHHhccChHHHHHHHHHH
Confidence            99999999999999999874 544555555443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.70  E-value=5e-06  Score=70.35  Aligned_cols=176  Identities=9%  Similarity=-0.023  Sum_probs=121.8

Q ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC----Cccch
Q 014860          155 EMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG----KNTYI  230 (417)
Q Consensus       155 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g----~~~~~  230 (417)
                      +|.+.|....+.    .+...+..+...|...+++++|++.|++..+.   |   +...+..+-..|.. +    +    
T Consensus         4 eA~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---g---~~~a~~~lg~~y~~-~g~~~~----   68 (212)
T 3rjv_A            4 EPGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ---G---DGDALALLAQLKIR-NPQQAD----   68 (212)
T ss_dssp             CTTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT---T---CHHHHHHHHHHTTS-STTSCC----
T ss_pred             hHHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc---C---CHHHHHHHHHHHHc-CCCCCC----
Confidence            355666666665    35567777777777788888888888887765   2   56666666666666 5    5    


Q ss_pred             hhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHhhhhCCCC-CCHHHHHHHHHHHHh---
Q 014860          231 NHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL----SNHVNDALRIFHQMGVVYNYL-PNSFSYDYLIHGLCA---  302 (417)
Q Consensus       231 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~-~~~~~~~~li~~~~~---  302 (417)
                          .++|++.|++..+.|   +...+..|-..|..    .+++++|.+.|+...+ .+.. .+...+..|-..|..   
T Consensus        69 ----~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~-~~~~~~~~~a~~~Lg~~y~~g~g  140 (212)
T 3rjv_A           69 ----YPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR-DSESDAAVDAQMLLGLIYASGVH  140 (212)
T ss_dssp             ----HHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS-STTSHHHHHHHHHHHHHHHHTSS
T ss_pred             ----HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH-cCCCcchHHHHHHHHHHHHcCCC
Confidence                788888888877654   55566666666666    6788888888887765 2211 015677777777777   


Q ss_pred             -cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHcC
Q 014860          303 -QGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN-G-----EVEETVKNLWEMIEKQ  355 (417)
Q Consensus       303 -~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g  355 (417)
                       .+++++|..+|++..+.+  .+...+..|-..|... |     +.++|..+|++..+.|
T Consensus       141 ~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          141 GPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             SSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence             778888888888887761  2444566666666653 3     7888888888887776

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.70  E-value=1.1e-06  Score=86.37  Aligned_cols=153  Identities=8%  Similarity=-0.044  Sum_probs=114.4

Q ss_pred             cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 014860          114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAV  193 (417)
Q Consensus       114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  193 (417)
                      .|++++|++.|+.+.+..  +.+...+..+...+...|++++|.+.+++..+...  .+...+..+...|.+.|++++|.
T Consensus         2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~   77 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP--GHPEAVARLGRVRWTQQRHAEAA   77 (568)
T ss_dssp             ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST--TCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHCCCHHHHH
Confidence            467888999998876543  45688888999999999999999999999988764  56888999999999999999999


Q ss_pred             HHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCH
Q 014860          194 YVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS---NHV  270 (417)
Q Consensus       194 ~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~  270 (417)
                      +.|++..+.    .+.+...|..+...+...|+        +++|.+.|++..+.. +-+...+..+...+...   |+.
T Consensus        78 ~~~~~al~~----~p~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~  144 (568)
T 2vsy_A           78 VLLQQASDA----APEHPGIALWLGHALEDAGQ--------AEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRAL  144 (568)
T ss_dssp             HHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHHHHhc----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccH
Confidence            999998875    13457889999999999999        999999999988764 34577888888889998   999


Q ss_pred             HHHHHHHHHhhhh
Q 014860          271 NDALRIFHQMGVV  283 (417)
Q Consensus       271 ~~a~~~~~~m~~~  283 (417)
                      ++|.+.+++..+.
T Consensus       145 ~~A~~~~~~al~~  157 (568)
T 2vsy_A          145 DVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhc
Confidence            9999999888763

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.69  E-value=2.7e-06  Score=72.69  Aligned_cols=170  Identities=12%  Similarity=0.003  Sum_probs=127.4

Q ss_pred             CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCC
Q 014860          210 SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-P-DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYL  287 (417)
Q Consensus       210 ~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~  287 (417)
                      +...+..+...+...|+        +++|+..|+++.+.... | ....+..+..+|.+.|++++|...|+...+...-.
T Consensus         3 ~~~~~~~~a~~~~~~g~--------~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~   74 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGN--------WRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH   74 (225)
T ss_dssp             CHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             CHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC
Confidence            44556677778899999        99999999999875321 1 13577788899999999999999999987743222


Q ss_pred             CCH-HHHHHHHHHHHh------------------cCCHHHHHHHHHHHHHCCCCCC-HHHH-----------------HH
Q 014860          288 PNS-FSYDYLIHGLCA------------------QGRTKNARELCDEMKRKGFVPS-SKSY-----------------NS  330 (417)
Q Consensus       288 ~~~-~~~~~li~~~~~------------------~g~~~~A~~l~~~m~~~g~~p~-~~~~-----------------~~  330 (417)
                      +.. ..+-.+..++..                  .|++++|...|+++.+..  |+ ...+                 ..
T Consensus        75 ~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~~  152 (225)
T 2yhc_A           75 PNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEYS  152 (225)
T ss_dssp             TTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHHH
Confidence            322 234334444433                  578999999999998763  33 2222                 24


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860          331 LVSALALNGEVEETVKNLWEMIEKQRPVD----FITYRTVLDEICRRGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  391 (417)
                      +...|.+.|++++|...|+++.+.  -|+    ...+..+..+|.+.|+.++|.+.++.+...+.
T Consensus       153 ~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~  215 (225)
T 2yhc_A          153 VAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS  215 (225)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence            556788999999999999999986  233    24678889999999999999999999988764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.68  E-value=1.7e-06  Score=73.00  Aligned_cols=164  Identities=13%  Similarity=0.091  Sum_probs=88.4

Q ss_pred             HHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC-HHHHHH----------------HHHHHHhcCCccchhhhhHHHHH
Q 014860          177 NTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS-IRSYNI----------------LFTAFLSRGKNTYINHVYMETIR  239 (417)
Q Consensus       177 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~-~~~~~~----------------li~~~~~~g~~~~~~~~~~~~a~  239 (417)
                      -.....+.+.|++++|+..|++..+.     .|+ ...|..                +...+...|+        +++|+
T Consensus         8 ~~~g~~~~~~g~~~~A~~~~~~al~~-----~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------~~~A~   74 (208)
T 3urz_A            8 LQKVSAAIEAGQNGQAVSYFRQTIAL-----NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRN--------YDKAY   74 (208)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-----CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTC--------HHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCC--------HHHHH
Confidence            34445566777788888877777764     332 333444                6666666666        66777


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 014860          240 CLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGR--TKNARELCDEMK  317 (417)
Q Consensus       240 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~--~~~A~~l~~~m~  317 (417)
                      ..|++..+.. +-+...+..+-..|...|++++|...|++..+..  +.+...|..+...|...|+  .+.+...+....
T Consensus        75 ~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~  151 (208)
T 3urz_A           75 LFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE--ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS  151 (208)
T ss_dssp             HHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence            6666666543 2345566666666666666666666666665421  2345555555555544432  223333333332


Q ss_pred             HCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 014860          318 RKGFVPSSK--SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFIT  362 (417)
Q Consensus       318 ~~g~~p~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  362 (417)
                          .|+..  .+...-.++...|++++|...|++..+.  .|+...
T Consensus       152 ----~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~  192 (208)
T 3urz_A          152 ----SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA  192 (208)
T ss_dssp             ----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred             ----CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence                22222  2222333444556666666666665543  455443

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.65  E-value=3e-06  Score=75.40  Aligned_cols=159  Identities=10%  Similarity=0.011  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860          212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF  291 (417)
Q Consensus       212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  291 (417)
                      ..+..+...+...|+        .++|...|++..+.. +-+...+..+...+.+.|++++|...++.....   .|+..
T Consensus       118 ~~~~~~a~~~~~~g~--------~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~  185 (287)
T 3qou_A          118 ELXAQQAMQLMQESN--------YTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTR  185 (287)
T ss_dssp             HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHH
T ss_pred             hhHHHHHHHHHhCCC--------HHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchH
Confidence            334444444555555        555555555554432 223444445555555555555555555554331   13322


Q ss_pred             HHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 014860          292 SYDYL-IHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD---FITYRTVL  367 (417)
Q Consensus       292 ~~~~l-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~~~~~li  367 (417)
                      ..... ...+...++.++|...+++..+.. +.+...+..+...|...|++++|...|.++.+..  |+   ...+..+.
T Consensus       186 ~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~--p~~~~~~a~~~l~  262 (287)
T 3qou_A          186 YQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXD--LTAADGQTRXTFQ  262 (287)
T ss_dssp             HHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc--cccccchHHHHHH
Confidence            22111 112334445555555555555432 1244555555556666666666666665555541  22   34555555


Q ss_pred             HHHHHcCCHhHHHHHHHH
Q 014860          368 DEICRRGRAGEAMKLLKE  385 (417)
Q Consensus       368 ~~~~~~g~~~~A~~~~~~  385 (417)
                      ..|...|+.++|...+++
T Consensus       263 ~~~~~~g~~~~a~~~~r~  280 (287)
T 3qou_A          263 EILAALGTGDALASXYRR  280 (287)
T ss_dssp             HHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHcCCCCcHHHHHHH
Confidence            666666666665555554

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.63  E-value=1.2e-06  Score=78.90  Aligned_cols=230  Identities=13%  Similarity=0.057  Sum_probs=152.6

Q ss_pred             cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHH
Q 014860          114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAV  193 (417)
Q Consensus       114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~  193 (417)
                      .|++++|.++++...+...  ..         .+...+++++|...+...                ...|...|++++|.
T Consensus         4 ~~~~~eA~~~~~~a~k~~~--~~---------~~~~~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLK--TS---------FMKWKPDYDSAASEYAKA----------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--CC---------SSSCSCCHHHHHHHHHHH----------------HHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHHHcc--cc---------ccCCCCCHHHHHHHHHHH----------------HHHHHHcCCHHHHH
Confidence            4667778888876643221  10         011146666666666543                56778889999999


Q ss_pred             HHHHHhHhCC-CCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHH
Q 014860          194 YVFKYMKNSR-NLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GIEPD--IFSLNSMIKGYI  265 (417)
Q Consensus       194 ~~~~~m~~~~-~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~  265 (417)
                      ..|.+..+.. ..+-.. -..+|+.+...|...|+        +++|+..|++..+.    | .+.  ..+++.+-..|.
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------~~~A~~~~~~Al~l~~~~g-~~~~~a~~~~~lg~~~~  127 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQR--------MPEAVQYIEKASVMYVENG-TPDTAAMALDRAGKLME  127 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------GGGGHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Confidence            9888776531 001111 14578888999999999        78888877765532    2 222  357778888888


Q ss_pred             hcCCHHHHHHHHHHhhhhC---CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHH
Q 014860          266 LSNHVNDALRIFHQMGVVY---NYL-PNSFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVPS-SKSYNSLVSALA  336 (417)
Q Consensus       266 ~~g~~~~a~~~~~~m~~~~---~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~li~~~~  336 (417)
                      . |++++|.+.|++.....   +-. ....++..+...|.+.|++++|...|++..+.    +..++ ...+..+..++.
T Consensus       128 ~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~  206 (307)
T 2ifu_A          128 P-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQL  206 (307)
T ss_dssp             T-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             c-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHH
Confidence            8 99999999998875421   110 11467888899999999999999999988753    22222 236677777888


Q ss_pred             hcCCHHHHHHHHHHHHHcC--CCCCH--HHHHHHHHHHHHcCCHhHHHHH
Q 014860          337 LNGEVEETVKNLWEMIEKQ--RPVDF--ITYRTVLDEICRRGRAGEAMKL  382 (417)
Q Consensus       337 ~~g~~~~A~~~~~~m~~~g--~~p~~--~~~~~li~~~~~~g~~~~A~~~  382 (417)
                      ..|++++|...|++.. ..  .....  .....++.++ ..|+.+.+.++
T Consensus       207 ~~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          207 HRADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HTTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            8899999999999988 41  11111  2344555555 57777666663

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.62  E-value=1.2e-06  Score=71.68  Aligned_cols=163  Identities=10%  Similarity=0.070  Sum_probs=123.5

Q ss_pred             HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHH
Q 014860          213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFS  292 (417)
Q Consensus       213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~  292 (417)
                      .+..+...+...|+        +++|...|++..+.. +-+...+..+...+...|++++|...++......   |+...
T Consensus         8 ~~~~~a~~~~~~g~--------~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~   75 (176)
T 2r5s_A            8 QLLKQVSELLQQGE--------HAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSY   75 (176)
T ss_dssp             THHHHHHHHHHTTC--------HHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHH
T ss_pred             HHHHHHHHHHHcCC--------HHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHH
Confidence            34566777889999        999999999877643 3467788999999999999999999999986632   34433


Q ss_pred             HHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHH
Q 014860          293 YDYLIHG-LCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPV-DFITYRTVLDEI  370 (417)
Q Consensus       293 ~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~  370 (417)
                      +..+... +...+...+|...+++..+... -+...+..+..++...|++++|...|+++.+..-.+ +...+..+...+
T Consensus        76 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~  154 (176)
T 2r5s_A           76 KSLIAKLELHQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDIL  154 (176)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHH
Confidence            3322211 2222333457888888877532 258889999999999999999999999998863222 356888899999


Q ss_pred             HHcCCHhHHHHHHHHHHH
Q 014860          371 CRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       371 ~~~g~~~~A~~~~~~m~~  388 (417)
                      ...|+.++|...|++...
T Consensus       155 ~~~g~~~~A~~~y~~al~  172 (176)
T 2r5s_A          155 SALGQGNAIASKYRRQLY  172 (176)
T ss_dssp             HHHCSSCHHHHHHHHHHH
T ss_pred             HHhCCCCcHHHHHHHHHH
Confidence            999999999999987654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.60  E-value=4.9e-06  Score=70.05  Aligned_cols=143  Identities=10%  Similarity=-0.053  Sum_probs=112.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 014860          257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALA  336 (417)
Q Consensus       257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~  336 (417)
                      +..+...+...|++++|.+.|++..     .++...|..+...|...|++++|...+++..+.. +.+...|..+..+|.
T Consensus         9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~   82 (213)
T 1hh8_A            9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence            4455667788999999999998774     3688899999999999999999999999988764 336788999999999


Q ss_pred             hcCCHHHHHHHHHHHHHcCC--------------CC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHH
Q 014860          337 LNGEVEETVKNLWEMIEKQR--------------PV-DFITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKL  400 (417)
Q Consensus       337 ~~g~~~~A~~~~~~m~~~g~--------------~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~l  400 (417)
                      ..|++++|.+.|++..+..-              .| ....+..+..+|...|++++|.+.|++..+... .....+...
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~a  162 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKA  162 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHH
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHHH
Confidence            99999999999999988521              11 126778888899999999999999999988765 233344444


Q ss_pred             HHHHH
Q 014860          401 LDVLE  405 (417)
Q Consensus       401 l~~~~  405 (417)
                      +..+.
T Consensus       163 ~~~~~  167 (213)
T 1hh8_A          163 MECVW  167 (213)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.58  E-value=2.7e-07  Score=73.57  Aligned_cols=106  Identities=8%  Similarity=0.025  Sum_probs=53.8

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHH
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRA  192 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a  192 (417)
                      ..|++++|+..+.......  +-+...+-.+...|.+.|++++|.+.++...+..+  .+..+|..+..+|.+.|++++|
T Consensus         9 ~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p--~~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            9 SKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE--RDPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             CHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCchHHH
Confidence            3455555555555543211  11222333444555555555555555555555443  3455555555555555555555


Q ss_pred             HHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860          193 VYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK  226 (417)
Q Consensus       193 ~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~  226 (417)
                      +..|++..+..    +-+..+|..+...|.+.|+
T Consensus        85 ~~~~~~al~~~----p~~~~~~~~la~~~~~~~~  114 (150)
T 4ga2_A           85 VECYRRSVELN----PTQKDLVLKIAELLCKNDV  114 (150)
T ss_dssp             HHHHHHHHHHC----TTCHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHhC----CCCHHHHHHHHHHHHHcCC
Confidence            55555555431    2234555555555555555

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.58  E-value=6e-06  Score=82.07  Aligned_cols=220  Identities=13%  Similarity=0.066  Sum_probs=169.1

Q ss_pred             hHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHH-HHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhh
Q 014860          154 QEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAV-YVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINH  232 (417)
Q Consensus       154 ~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~  232 (417)
                      +.+..+|++.+..-.  -+...|-..+..+.+.|+.++|. ++|++....    ++.+...|-..+...-+.|+      
T Consensus       326 ~Rv~~~Ye~aL~~~p--~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~----~P~s~~Lwl~~a~~ee~~~~------  393 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVC--FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQC----IPNSAVLAFSLSEQYELNTK------  393 (679)
T ss_dssp             HHHHHHHHHHHHHTT--TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC------
T ss_pred             HHHHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCC------
Confidence            345677888877543  57788999999999999999997 999999874    45677778888999999999      


Q ss_pred             hhHHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHhcCCHHHHHHHHHHhhhh-CCCCCCH
Q 014860          233 VYMETIRCLFKQMVNDGI---------EPD------------IFSLNSMIKGYILSNHVNDALRIFHQMGVV-YNYLPNS  290 (417)
Q Consensus       233 ~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~~  290 (417)
                        .++|.++|+.+.+...         .|+            ..+|...+....+.|..+.|..+|....+. ....+..
T Consensus       394 --~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~l  471 (679)
T 4e6h_A          394 --IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDI  471 (679)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHH
T ss_pred             --HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHH
Confidence              9999999998876310         132            346888888888899999999999999873 1222333


Q ss_pred             HHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 014860          291 FSYDYLIHGLCAQ-GRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPV--DFITYRTVL  367 (417)
Q Consensus       291 ~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li  367 (417)
                      ....+.+.  .+. ++.+.|..+|+...+. ..-+...|...+......|+.+.|..+|+........+  ....|...+
T Consensus       472 yi~~A~lE--~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~  548 (679)
T 4e6h_A          472 YLENAYIE--YHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVI  548 (679)
T ss_dssp             HHHHHHHH--HTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHH
T ss_pred             HHHHHHHH--HHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            33333333  333 4599999999998876 44467778888998889999999999999988763222  335788888


Q ss_pred             HHHHHcCCHhHHHHHHHHHHHCC
Q 014860          368 DEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       368 ~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      .-=.+.|+.+.+.++.+++.+.-
T Consensus       549 ~fE~~~G~~~~~~~v~~R~~~~~  571 (679)
T 4e6h_A          549 FFESKVGSLNSVRTLEKRFFEKF  571 (679)
T ss_dssp             HHHHHTCCSHHHHHHHHHHHHHS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC
Confidence            87788999999999999999874

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.57  E-value=1e-06  Score=79.37  Aligned_cols=205  Identities=9%  Similarity=0.028  Sum_probs=144.0

Q ss_pred             cCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHhCCH
Q 014860          114 QEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT----EALYNTIIYFFAEARKL  189 (417)
Q Consensus       114 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~  189 (417)
                      .++++.|...|..+                ...+...|++++|.+.+....+......+    ..+|+.+...|.+.|++
T Consensus        29 ~~~~~~A~~~~~~a----------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~   92 (307)
T 2ifu_A           29 KPDYDSAASEYAKA----------------AVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRM   92 (307)
T ss_dssp             SCCHHHHHHHHHHH----------------HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCG
T ss_pred             CCCHHHHHHHHHHH----------------HHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCH
Confidence            46788888877665                35677899999999998887764211112    45788899999999999


Q ss_pred             HHHHHHHHHhHhCC-CCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 014860          190 SRAVYVFKYMKNSR-NLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND----GIEP-DIFSLNSMIK  262 (417)
Q Consensus       190 ~~a~~~~~~m~~~~-~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~  262 (417)
                      ++|+..|++..+.- ..|-.. ...+++.+-..|.. |+        +++|++.|++..+.    |-.. ...+++.+..
T Consensus        93 ~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~--------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~  163 (307)
T 2ifu_A           93 PEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD--------LSKAVHLYQQAAAVFENEERLRQAAELIGKASR  163 (307)
T ss_dssp             GGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC--------HHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence            99999999876430 001111 24578888888888 99        99999999887643    2111 1467888899


Q ss_pred             HHHhcCCHHHHHHHHHHhhhhC---CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHH
Q 014860          263 GYILSNHVNDALRIFHQMGVVY---NYLPN-SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS------SKSYNSLV  332 (417)
Q Consensus       263 ~~~~~g~~~~a~~~~~~m~~~~---~~~~~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~------~~~~~~li  332 (417)
                      .|.+.|++++|...|++.....   +..+. ...+..+...+...|++++|...|++.. .  .|+      ......++
T Consensus       164 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~  240 (307)
T 2ifu_A          164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLL  240 (307)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHH
Confidence            9999999999999999886521   11111 2366677777888899999999999987 4  232      22345556


Q ss_pred             HHHHhcCCHHHHHHH
Q 014860          333 SALALNGEVEETVKN  347 (417)
Q Consensus       333 ~~~~~~g~~~~A~~~  347 (417)
                      .++ ..|+.+.+.++
T Consensus       241 ~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          241 QAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHH-HTTCHHHHHHH
T ss_pred             HHH-HhcCHHHHHHH
Confidence            655 56777666553

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.56  E-value=2.5e-05  Score=69.57  Aligned_cols=203  Identities=9%  Similarity=0.047  Sum_probs=123.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHH---HHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCC
Q 014860          130 QPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEA---LYNTIIYFFAEARKLSRAVYVFKYMKNSRNLE  206 (417)
Q Consensus       130 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g  206 (417)
                      .....|+..+...+...+.-.-  +   .++.    .... .+..   .+...+..+...|++++|..++++..+..  .
T Consensus        39 ~g~~~~~~~~l~~i~~~l~~~~--~---~~~~----~~~~-~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~--~  106 (293)
T 3u3w_A           39 SGAVYPSMDILQGIAAKLQIPI--I---HFYE----VLIY-SDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKE--E  106 (293)
T ss_dssp             TTSCCCCHHHHHHHHHHHTCCT--H---HHHH----TTTS-SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--C
T ss_pred             CCCCCCCHHHHHHHHHHhCcCH--H---HHhC----CCCC-CcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccc--c
Confidence            4445788888888877765322  1   1221    1111 2223   33344778889999999999999988752  1


Q ss_pred             CCCCH----HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHH
Q 014860          207 CRPSI----RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-PD----IFSLNSMIKGYILSNHVNDALRIF  277 (417)
Q Consensus       207 ~~p~~----~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~  277 (417)
                      ..|+.    ..+..+...+...++        +++|+..|++..+.... ++    ..+++.+...|...|++++|...|
T Consensus       107 ~~~~~~~~~~~~~~l~~~~~~~~~--------~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~  178 (293)
T 3u3w_A          107 YHPEFQQFLQWQYYVAAYVLKKVD--------YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLF  178 (293)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTSSC--------HHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHHHHcccC--------HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            22332    133346666666778        89999999998874322 22    236778888888888888888888


Q ss_pred             HHhhhh---C-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcC-CHHHHHH
Q 014860          278 HQMGVV---Y-NYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVPS-SKSYNSLVSALALNG-EVEETVK  346 (417)
Q Consensus       278 ~~m~~~---~-~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~~~~~li~~~~~~g-~~~~A~~  346 (417)
                      ++..+.   . +..+ ...+|..+...|.+.|++++|...+++..+.    +..+. ..+|..+-.+|.+.| ..++|.+
T Consensus       179 ~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~  258 (293)
T 3u3w_A          179 EQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIED  258 (293)
T ss_dssp             HHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence            877531   1 1111 1235666666777777777777776655432    22222 455666666666666 3466666


Q ss_pred             HHHHHH
Q 014860          347 NLWEMI  352 (417)
Q Consensus       347 ~~~~m~  352 (417)
                      .+++..
T Consensus       259 ~~~~Al  264 (293)
T 3u3w_A          259 AYKKAS  264 (293)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666554

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=98.55  E-value=7.6e-06  Score=81.33  Aligned_cols=236  Identities=10%  Similarity=0.052  Sum_probs=175.4

Q ss_pred             hHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHH-HHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHH
Q 014860          118 LVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMD-DVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVF  196 (417)
Q Consensus       118 ~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~  196 (417)
                      +.+..+|+.+....  +.+...|-..+..+...|+.++|. ++++.....-+  .+...|-..+...-+.|++++|.++|
T Consensus       326 ~Rv~~~Ye~aL~~~--p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P--~s~~Lwl~~a~~ee~~~~~e~aR~iy  401 (679)
T 4e6h_A          326 ARMTYVYMQAAQHV--CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP--NSAVLAFSLSEQYELNTKIPEIETTI  401 (679)
T ss_dssp             HHHHHHHHHHHHHT--TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc--CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            34566787776543  568888888888888999999996 99999987432  56777888999999999999999999


Q ss_pred             HHhHhCCCC------CCCCC------------HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC-C-CCCCHHH
Q 014860          197 KYMKNSRNL------ECRPS------------IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND-G-IEPDIFS  256 (417)
Q Consensus       197 ~~m~~~~~~------g~~p~------------~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~-g-~~p~~~~  256 (417)
                      +.+......      .-.|+            ...|...+....+.|+        .+.|.++|.+..+. + ..+....
T Consensus       402 ek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--------l~~AR~vf~~A~~~~~~~~~~lyi  473 (679)
T 4e6h_A          402 LSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--------LAASRKIFGKCRRLKKLVTPDIYL  473 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHHTGGGSCTHHHH
T ss_pred             HHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhcCCCChHHHH
Confidence            998863000      00132            3468888888888898        99999999999876 2 2233333


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHH
Q 014860          257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP--SSKSYNSLVSA  334 (417)
Q Consensus       257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~~~~~li~~  334 (417)
                      ..+.+.-. ..++.+.|.++|+...+.  ++.+...|...+......|+.+.|..+|++.......+  ....|...+..
T Consensus       474 ~~A~lE~~-~~~d~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~f  550 (679)
T 4e6h_A          474 ENAYIEYH-ISKDTKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFF  550 (679)
T ss_dssp             HHHHHHHT-TTSCCHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHH-hCCCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            33334322 235589999999998874  34566777888888888999999999999998764322  35689999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014860          335 LALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI  370 (417)
Q Consensus       335 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  370 (417)
                      -.+.|+.+.+.++.+++.+.  -|+......+++-|
T Consensus       551 E~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          551 ESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHh
Confidence            99999999999999999987  24433334444433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.53  E-value=2.7e-05  Score=69.35  Aligned_cols=167  Identities=8%  Similarity=0.009  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH------HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSI------RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN  247 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~------~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~  247 (417)
                      ..+...+..+...|++++|.+.+++..+..    +...      ..+..+...+...|+        +++|+..+++..+
T Consensus        76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~----~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~A~~~~~~al~  143 (293)
T 2qfc_A           76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKE----EYHPEFQQFLQWQYYVAAYVLKKVD--------YEYCILELKKLLN  143 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC----CCCHHHHHHHHHHHHHHHHHHTSSC--------HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhccc----cCChhHHHHHHHHHHHHHHHhcCCC--------HHHHHHHHHHHHH
Confidence            455567788889999999999998877651    1111      223445556677778        8888888888775


Q ss_pred             CCC---CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhh---hCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860          248 DGI---EPD--IFSLNSMIKGYILSNHVNDALRIFHQMGV---VYNYLP--NSFSYDYLIHGLCAQGRTKNARELCDEMK  317 (417)
Q Consensus       248 ~g~---~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~---~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~  317 (417)
                      ...   .+.  ..+++.+-..|...|++++|...|++..+   ..+-.+  ...++..+...|...|++++|...+++..
T Consensus       144 ~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal  223 (293)
T 2qfc_A          144 QQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI  223 (293)
T ss_dssp             TCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence            321   111  34677777778888888888888877652   111111  12466666677777777777777776654


Q ss_pred             HC----CCCCC-HHHHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 014860          318 RK----GFVPS-SKSYNSLVSALALNGEVEET-VKNLWEMI  352 (417)
Q Consensus       318 ~~----g~~p~-~~~~~~li~~~~~~g~~~~A-~~~~~~m~  352 (417)
                      +.    +.... ..+|..+..+|.+.|+.++| ...+++..
T Consensus       224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            32    11111 44566666666666666666 55555443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.53  E-value=7.8e-07  Score=70.86  Aligned_cols=140  Identities=10%  Similarity=-0.007  Sum_probs=96.4

Q ss_pred             HHHhcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860          263 GYILSNHVNDALRIFHQMGVVYNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV  341 (417)
Q Consensus       263 ~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~  341 (417)
                      .+...|++++|...+.....   ..| +...+-.+-..|.+.|++++|.+.|++..+.... +..+|..+..+|...|++
T Consensus         6 ~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            6 MRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence            34456777888777777644   122 2334556777788888888888888888775322 677888888888888888


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHH-HHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          342 EETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKL-LKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       342 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                      ++|...|++..+.. +-+...|..+...|.+.|+.++|.+. +++..+...-+...|...-+.+...
T Consensus        82 ~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~  147 (150)
T 4ga2_A           82 DKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCE  147 (150)
T ss_dssp             HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHh
Confidence            88888888888752 23566788888888888888766554 5776665433666666555555444

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.53  E-value=2.3e-05  Score=69.82  Aligned_cols=170  Identities=8%  Similarity=-0.065  Sum_probs=126.3

Q ss_pred             HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 014860          211 IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-----FSLNSMIKGYILSNHVNDALRIFHQMGVVYN  285 (417)
Q Consensus       211 ~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  285 (417)
                      ...+...+..+...|+        +++|.+.+++..+.....+.     ..+..+...+...|++++|...+++..+...
T Consensus        75 ~~~l~~~~~~~~~~~~--------y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~  146 (293)
T 2qfc_A           75 KKQFKDQVIMLCKQKR--------YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQL  146 (293)
T ss_dssp             HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHhhh--------HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence            4556677888899999        99999999988875422111     2234455667788999999999998764111


Q ss_pred             --CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---C-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-
Q 014860          286 --YLPN--SFSYDYLIHGLCAQGRTKNARELCDEMKR---K-GFVP--SSKSYNSLVSALALNGEVEETVKNLWEMIEK-  354 (417)
Q Consensus       286 --~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~-g~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-  354 (417)
                        ..+.  ..+|+.+...|...|++++|...+++..+   . +..+  ...+++.+...|...|++++|...+++..+. 
T Consensus       147 ~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~  226 (293)
T 2qfc_A          147 TGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS  226 (293)
T ss_dssp             CSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             cCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence              1122  45889999999999999999999998872   2 1111  1258889999999999999999999987754 


Q ss_pred             ---CCCCC-HHHHHHHHHHHHHcCCHhHH-HHHHHHHHH
Q 014860          355 ---QRPVD-FITYRTVLDEICRRGRAGEA-MKLLKELQN  388 (417)
Q Consensus       355 ---g~~p~-~~~~~~li~~~~~~g~~~~A-~~~~~~m~~  388 (417)
                         +.... ..+|..+...|.+.|+.++| ...+++...
T Consensus       227 ~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence               22222 56788899999999999999 777776554

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.51  E-value=9.8e-06  Score=68.14  Aligned_cols=130  Identities=7%  Similarity=-0.044  Sum_probs=109.1

Q ss_pred             HHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Q 014860          105 EELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFA  184 (417)
Q Consensus       105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~  184 (417)
                      ..+...+...|++++|++.|+.+.     .++...+..+...+...|++++|.+.++...+...  .+...+..+..+|.
T Consensus        10 ~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~lg~~~~   82 (213)
T 1hh8_A           10 WNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc--cchHHHHHHHHHHH
Confidence            345566778999999999998773     56889999999999999999999999999988764  67889999999999


Q ss_pred             HhCCHHHHHHHHHHhHhCCCC-C----------CCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860          185 EARKLSRAVYVFKYMKNSRNL-E----------CRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG  249 (417)
Q Consensus       185 ~~g~~~~a~~~~~~m~~~~~~-g----------~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g  249 (417)
                      +.|++++|+..|++..+.... .          ..| ....|..+...+...|+        +++|.+.|++..+..
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--------WKKAEEQLALATSMK  151 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTC
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC--------HHHHHHHHHHHHHcC
Confidence            999999999999999885200 0          111 23778899999999999        999999999998764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.50  E-value=8.2e-06  Score=61.62  Aligned_cols=98  Identities=14%  Similarity=0.195  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014860          291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI  370 (417)
Q Consensus       291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  370 (417)
                      ..|..+...+...|++++|.++++++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...|
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            444555555555555555555555555432 1234455555555555566666655555555431 23444555555555


Q ss_pred             HHcCCHhHHHHHHHHHHHCC
Q 014860          371 CRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       371 ~~~g~~~~A~~~~~~m~~~~  390 (417)
                      ...|++++|...++++.+..
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~  107 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELD  107 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHhcCHHHHHHHHHHHHHhC
Confidence            56666666666666555543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.49  E-value=0.0001  Score=66.73  Aligned_cols=189  Identities=8%  Similarity=-0.023  Sum_probs=135.5

Q ss_pred             HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 014860          107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAK-MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE  185 (417)
Q Consensus       107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~  185 (417)
                      +...+...+..++|+++++.+....  +-+..+|+.--.++...| .++++.++++.+.....  .+..+|+.-...+.+
T Consensus        60 ~r~~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP--Kny~aW~hR~wlL~~  135 (349)
T 3q7a_A           60 FRAIAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL--KSYQVWHHRLLLLDR  135 (349)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC--CCHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHH
Confidence            3444456667789999999997654  456777888777777888 59999999999998776  688899988888888


Q ss_pred             h-C-CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860          186 A-R-KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG  263 (417)
Q Consensus       186 ~-g-~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  263 (417)
                      . + ++++++++++.+.+.    -+-+..+|+.-.-.+.+.|.........++++++.++++.+.. .-|...|+-.-..
T Consensus       136 l~~~~~~~EL~~~~k~L~~----dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~l  210 (349)
T 3q7a_A          136 ISPQDPVSEIEYIHGSLLP----DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYL  210 (349)
T ss_dssp             HCCSCCHHHHHHHHHHTSS----CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hcCCChHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            7 7 899999999999986    2557888887655555544411111112458888888888765 4477788877777


Q ss_pred             HHhcCC-------HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 014860          264 YILSNH-------VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRT  306 (417)
Q Consensus       264 ~~~~g~-------~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~  306 (417)
                      +.+.++       ++++++.+++....  -+-|...|+.+-..+.+.|+.
T Consensus       211 L~~l~~~~~~~~~~~eELe~~~~aI~~--~P~n~SaW~Ylr~Ll~~~~~~  258 (349)
T 3q7a_A          211 RVSRPGAETSSRSLQDELIYILKSIHL--IPHNVSAWNYLRGFLKHFSLP  258 (349)
T ss_dssp             HTTSTTCCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCC
T ss_pred             HHhccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCC
Confidence            777665       56777777766542  235667777766666665543

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.47  E-value=8.6e-06  Score=65.26  Aligned_cols=93  Identities=11%  Similarity=0.001  Sum_probs=40.0

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH
Q 014860          176 YNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF  255 (417)
Q Consensus       176 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  255 (417)
                      +..+...+...|++++|...|++..+.    .+.+...|..+...+...|+        +++|.+.+++..+.. +.+..
T Consensus        16 ~~~~a~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~~~~a~~~~~~~~--------~~~A~~~~~~a~~~~-~~~~~   82 (166)
T 1a17_A           16 LKTQANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELD-KKYIK   82 (166)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHh----CCCChHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-cccHH
Confidence            334444444444444444444444432    12234444444444444444        444444444444332 22333


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHhh
Q 014860          256 SLNSMIKGYILSNHVNDALRIFHQMG  281 (417)
Q Consensus       256 ~~~~li~~~~~~g~~~~a~~~~~~m~  281 (417)
                      .+..+...+...|++++|.+.|++..
T Consensus        83 ~~~~~a~~~~~~~~~~~A~~~~~~a~  108 (166)
T 1a17_A           83 GYYRRAASNMALGKFRAALRDYETVV  108 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            44444444444444444444444443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.46  E-value=4e-06  Score=69.85  Aligned_cols=160  Identities=11%  Similarity=0.042  Sum_probs=105.7

Q ss_pred             HccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCC-CCCCCC-CHHHHHHHHHHHHhcC
Q 014860          148 GAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSR-NLECRP-SIRSYNILFTAFLSRG  225 (417)
Q Consensus       148 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~g~~p-~~~~~~~li~~~~~~g  225 (417)
                      ...|++++|.++++.+...+.  ....++..+...|...|++++|...|++..+.- ..+..+ ...++..+...+...|
T Consensus         3 ~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g   80 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAHPA--TASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG   80 (203)
T ss_dssp             ----CHHHHHHHHHHHHTSTT--THHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred             cccccHHHHHHHHHHhcCChH--HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence            457888888886555544322  457788889999999999999999998877620 001122 3567888888999999


Q ss_pred             CccchhhhhHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC----HHHHHH
Q 014860          226 KNTYINHVYMETIRCLFKQMVND----GIEP--DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN----SFSYDY  295 (417)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~  295 (417)
                      +        +++|.+.+++..+.    +-.+  ....+..+-..+...|++++|.+.+++......-..+    ..++..
T Consensus        81 ~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  152 (203)
T 3gw4_A           81 N--------WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRG  152 (203)
T ss_dssp             C--------HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             C--------HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            9        99999998876642    2111  2345677778888889999988888876531110111    223456


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHH
Q 014860          296 LIHGLCAQGRTKNARELCDEMK  317 (417)
Q Consensus       296 li~~~~~~g~~~~A~~l~~~m~  317 (417)
                      +...+...|++++|.+.+++..
T Consensus       153 la~~~~~~g~~~~A~~~~~~al  174 (203)
T 3gw4_A          153 LGDLAQQEKNLLEAQQHWLRAR  174 (203)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHH
Confidence            6666777777777777666554

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.46  E-value=9.2e-06  Score=65.07  Aligned_cols=129  Identities=10%  Similarity=0.005  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH
Q 014860          138 STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL  217 (417)
Q Consensus       138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l  217 (417)
                      ..+..+...+...|++++|...++...+...  .+..++..+...+...|++++|...|++..+.    .+.+...|..+
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~~~~   87 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL----DKKYIKGYYRR   87 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CcccHHHHHHH
Confidence            4455666677788888888888888877653  46778888888888888888888888888775    23457778888


Q ss_pred             HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHhh
Q 014860          218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN--SMIKGYILSNHVNDALRIFHQMG  281 (417)
Q Consensus       218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~  281 (417)
                      ...+...|+        +++|.+.|++..+.. +.+...+.  .....+.+.|++++|.+.+....
T Consensus        88 a~~~~~~~~--------~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           88 AASNMALGK--------FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHHHHHTTC--------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcc--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            888888888        888888888887654 22344443  33333666778888877776654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.46  E-value=1.1e-05  Score=60.92  Aligned_cols=96  Identities=7%  Similarity=0.097  Sum_probs=44.8

Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH
Q 014860          138 STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL  217 (417)
Q Consensus       138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l  217 (417)
                      ..+..+...+...|++++|.+.++.+.+...  .+..++..+...+.+.|++++|..+|+++.+.    .+.+..++..+
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~l   83 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL----DPNNAEAWYNL   83 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc--CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----CCccHHHHHHH
Confidence            3444444444455555555555554444322  23444444445555555555555555544442    12234444444


Q ss_pred             HHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860          218 FTAFLSRGKNTYINHVYMETIRCLFKQMVN  247 (417)
Q Consensus       218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~  247 (417)
                      ...+...|+        +++|...|+++.+
T Consensus        84 a~~~~~~~~--------~~~A~~~~~~~~~  105 (125)
T 1na0_A           84 GNAYYKQGD--------YDEAIEYYQKALE  105 (125)
T ss_dssp             HHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred             HHHHHHhcC--------HHHHHHHHHHHHH
Confidence            445555555        5555555544443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.44  E-value=1.2e-05  Score=71.62  Aligned_cols=166  Identities=8%  Similarity=-0.051  Sum_probs=119.9

Q ss_pred             HHHHhccCChhHHHHHHHHhhcCCCCCCCHH----HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC----HHHHHHH
Q 014860          108 CNVMTLQEDPLVCLELFNWASKQPRFRHDAS----TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT----EALYNTI  179 (417)
Q Consensus       108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~l  179 (417)
                      +..+...++++.|.++++...+.....++..    .+..+...+...+++++|...++...+......+    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            5566788999999999999876554444432    3334666677888999999999999885332233    3478999


Q ss_pred             HHHHHHhCCHHHHHHHHHHhHhCCC-C-CCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH----CCCCC
Q 014860          180 IYFFAEARKLSRAVYVFKYMKNSRN-L-ECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN----DGIEP  252 (417)
Q Consensus       180 i~~~~~~g~~~~a~~~~~~m~~~~~-~-g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~----~g~~p  252 (417)
                      ...|...|++++|+..|+++.+.-. . +..+ ...+|..+...|.+.|+        +++|.+.+++..+    .+..+
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--------y~~A~~~~~~al~~~~~~~~~~  233 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--------YEESLYQVNKAIEISCRINSMA  233 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTTBCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH--------HHHHHHHHHHHHHHHHHcCcHH
Confidence            9999999999999999999874100 0 1122 23478889999999999        9999998887764    22222


Q ss_pred             C-HHHHHHHHHHHHhcCC-HHHHHHHHHHhh
Q 014860          253 D-IFSLNSMIKGYILSNH-VNDALRIFHQMG  281 (417)
Q Consensus       253 ~-~~~~~~li~~~~~~g~-~~~a~~~~~~m~  281 (417)
                      . ..+|..+-.+|.+.|+ +++|.+.+++..
T Consensus       234 ~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al  264 (293)
T 3u3w_A          234 LIGQLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             THHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            2 5677778888888884 588877777654

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.41  E-value=3.4e-05  Score=67.53  Aligned_cols=202  Identities=7%  Similarity=-0.128  Sum_probs=141.2

Q ss_pred             ccCChhHHHHHHHHHHcCCCCCCCHHHHHHH-------HHHHHHhCCHHHHHHHHHHhHhCC--------C-CCCC----
Q 014860          149 AAKMYQEMDDVVNQMLATPSFCGTEALYNTI-------IYFFAEARKLSRAVYVFKYMKNSR--------N-LECR----  208 (417)
Q Consensus       149 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~l-------i~~~~~~g~~~~a~~~~~~m~~~~--------~-~g~~----  208 (417)
                      ..++.+.|.+.|.+..+..+  .....|..+       ...+.+.++..+++..+..-....        . .|..    
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP--~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDE--SACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhCh--hhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence            57899999999999988765  456777777       455556555666655555544310        0 1110    


Q ss_pred             ----CCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC
Q 014860          209 ----PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY  284 (417)
Q Consensus       209 ----p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  284 (417)
                          --...+-.....+...|+        +++|.++|+.+...+  |+....-.+-..+.+.+++++|+..|+.... .
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~--------y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~-~  164 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGN--------YADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGK-W  164 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTC--------HHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGG-C
T ss_pred             cccCCHhHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhc-c
Confidence                012345567778889999        999999999887654  5444555566678899999999999986654 1


Q ss_pred             CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 014860          285 NYLP--NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS--SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDF  360 (417)
Q Consensus       285 ~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  360 (417)
                      . .|  ....+..+-.++...|++++|+..|++.......|.  .......-.++.+.|+.++|..+|+++...  .|+.
T Consensus       165 ~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~  241 (282)
T 4f3v_A          165 P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEP  241 (282)
T ss_dssp             S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCH
T ss_pred             C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcH
Confidence            1 11  134677778889999999999999999875443254  345667777888999999999999999986  4564


Q ss_pred             HHHHHH
Q 014860          361 ITYRTV  366 (417)
Q Consensus       361 ~~~~~l  366 (417)
                      ..+..|
T Consensus       242 ~~~~aL  247 (282)
T 4f3v_A          242 KVAAAL  247 (282)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            444444

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.41  E-value=0.00016  Score=65.40  Aligned_cols=234  Identities=7%  Similarity=-0.025  Sum_probs=170.0

Q ss_pred             cCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc-C-C
Q 014860          150 AKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR-KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR-G-K  226 (417)
Q Consensus       150 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~-g-~  226 (417)
                      .+..++|.++.+.++....  .+..+|+.--..+...| .+++++++++.+...    .+-+..+|+.--..+... + +
T Consensus        67 ~e~se~AL~lt~~~L~~nP--~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~----nPKny~aW~hR~wlL~~l~~~~  140 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNP--AHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ----NLKSYQVWHHRLLLLDRISPQD  140 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHCCSC
T ss_pred             CCCCHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHhcCCC
Confidence            3445689999999988775  57778888888888888 599999999999985    345678899877777776 6 6


Q ss_pred             ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 014860          227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVN--------DALRIFHQMGVVYNYLPNSFSYDYLIH  298 (417)
Q Consensus       227 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------~a~~~~~~m~~~~~~~~~~~~~~~li~  298 (417)
                              .++++++++.+.+.. +-|-.+|+--.-.+.+.|.++        ++++.++++.+. . .-|...|+..-.
T Consensus       141 --------~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~-d-p~N~SAW~~R~~  209 (349)
T 3q7a_A          141 --------PVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV-D-GRNNSAWGWRWY  209 (349)
T ss_dssp             --------CHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH-C-TTCHHHHHHHHH
T ss_pred             --------hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh-C-CCCHHHHHHHHH
Confidence                    789999999999765 446777776555555555555        899999988772 2 468888998888


Q ss_pred             HHHhcCC-------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHH
Q 014860          299 GLCAQGR-------TKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEV--------------------EETVKNLWEM  351 (417)
Q Consensus       299 ~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m  351 (417)
                      .+.+.++       ++++++.++++...... |...|+-+-..+.+.|+.                    .+..+...++
T Consensus       210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (349)
T 3q7a_A          210 LRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPM  288 (349)
T ss_dssp             HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCC
T ss_pred             HHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHH
Confidence            8888876       68899999888876444 788898877777776653                    2333333333


Q ss_pred             HHcC-----CCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCChhhHHHHH
Q 014860          352 IEKQ-----RPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK-NLIDGYTYTKLL  401 (417)
Q Consensus       352 ~~~g-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll  401 (417)
                      ...+     -.++......|...|...|+.++|.++++.+.+. +.+...-|+-..
T Consensus       289 ~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~  344 (349)
T 3q7a_A          289 PSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRR  344 (349)
T ss_dssp             CC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             HhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHH
Confidence            3221     1367788899999999999999999999999755 323444444333

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.40  E-value=1.5e-05  Score=61.11  Aligned_cols=107  Identities=8%  Similarity=-0.018  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014860          291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI  370 (417)
Q Consensus       291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  370 (417)
                      ..+...-..|.+.|++++|++.|++..+.. +.+...|..+..+|.+.|++++|+..|++..+.. +.+...|..+..+|
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence            345555666677777777777777666543 2256666777777777777777777777766642 33455666677777


Q ss_pred             HHcCCHhHHHHHHHHHHHCCCCChhhHHH
Q 014860          371 CRRGRAGEAMKLLKELQNKNLIDGYTYTK  399 (417)
Q Consensus       371 ~~~g~~~~A~~~~~~m~~~~~p~~~t~~~  399 (417)
                      ...|++++|.+.|++..+...-+...+..
T Consensus        92 ~~~~~~~~A~~~~~~al~l~P~~~~a~~~  120 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVDPSNEEAREG  120 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCcCCHHHHHH
Confidence            77777777777777776654334444433

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.38  E-value=1.3e-05  Score=61.36  Aligned_cols=100  Identities=8%  Similarity=-0.012  Sum_probs=58.1

Q ss_pred             CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHH
Q 014860          135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSY  214 (417)
Q Consensus       135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~  214 (417)
                      .+...+..+...+...|++++|...++...+...  .+...+..+...|...|++++|++.|++..+.    .+.+...|
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~----~~~~~~~~   87 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNP--KDAKLYSNRAACYTKLLEFQLALKDCEECIQL----EPTFIKGY   87 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCT--TCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH----CTTCHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh----CCCchHHH
Confidence            3455555555566666666666666666655433  34555666666666666666666666665553    12345556


Q ss_pred             HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          215 NILFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       215 ~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      ..+...+...|+        +++|.+.|++..+.
T Consensus        88 ~~la~~~~~~~~--------~~~A~~~~~~~~~~  113 (133)
T 2lni_A           88 TRKAAALEAMKD--------YTKAMDVYQKALDL  113 (133)
T ss_dssp             HHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhh--------HHHHHHHHHHHHHh
Confidence            666666666666        66666666665543

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.37  E-value=5.4e-06  Score=69.02  Aligned_cols=158  Identities=11%  Similarity=0.007  Sum_probs=96.2

Q ss_pred             HHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH----CCCC-CCHHHHH
Q 014860          184 AEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN----DGIE-PDIFSLN  258 (417)
Q Consensus       184 ~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~----~g~~-p~~~~~~  258 (417)
                      ...|++++|.++++.+...    ......++..+...+...|+        +++|...+++..+    .+.. ....++.
T Consensus         3 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~   70 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH----PATASGARFMLGYVYAFMDR--------FDEARASFQALQQQAQKSGDHTAEHRALH   70 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS----TTTHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             cccccHHHHHHHHHHhcCC----hHHHHHHHHHHHHHHHHhCc--------HHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence            4678999999966655442    12356778888888999999        8999988888765    2211 2245666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhh---CCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHH
Q 014860          259 SMIKGYILSNHVNDALRIFHQMGVV---YNYLP--NSFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVP-SSKSY  328 (417)
Q Consensus       259 ~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~  328 (417)
                      .+-..|...|++++|.+.+++....   .+-.+  ....+..+...+...|++++|...+++....    +... -..++
T Consensus        71 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  150 (203)
T 3gw4_A           71 QVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAF  150 (203)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence            7777778888888888887766542   11111  1334566666677777777777777665532    1110 02234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          329 NSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       329 ~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      ..+...+...|++++|.+.+++..+
T Consensus       151 ~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          151 RGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            5555666666666666666655543

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.36  E-value=1.5e-05  Score=60.72  Aligned_cols=95  Identities=7%  Similarity=0.016  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHH
Q 014860          139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILF  218 (417)
Q Consensus       139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li  218 (417)
                      .+..+...+...|++++|...++...+...  .+...+..+...+...|++++|...++...+.    .+.+...|..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~~   87 (131)
T 2vyi_A           14 RLKTEGNEQMKVENFEAAVHFYGKAIELNP--ANAVYFCNRAAAYSKLGNYAGAVQDCERAICI----DPAYSKAYGRMG   87 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc----CccCHHHHHHHH
Confidence            333444444444555555554444444322  23444444444444455555555555444442    122344444444


Q ss_pred             HHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860          219 TAFLSRGKNTYINHVYMETIRCLFKQMVN  247 (417)
Q Consensus       219 ~~~~~~g~~~~~~~~~~~~a~~~~~~m~~  247 (417)
                      ..+...|+        +++|.+.|++..+
T Consensus        88 ~~~~~~~~--------~~~A~~~~~~~~~  108 (131)
T 2vyi_A           88 LALSSLNK--------HVEAVAYYKKALE  108 (131)
T ss_dssp             HHHHHTTC--------HHHHHHHHHHHHH
T ss_pred             HHHHHhCC--------HHHHHHHHHHHHh
Confidence            44444444        4455544444443

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.35  E-value=1.9e-06  Score=76.45  Aligned_cols=193  Identities=10%  Similarity=0.041  Sum_probs=113.4

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN  215 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~  215 (417)
                      +...+..+...+...|++++|...++...+...  .+...|..+..+|.+.|++++|+..+++..+.    .+.+...|.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~   76 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALEL----DGQSVKAHF   76 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS----CTTCHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHH
Confidence            456667777777888888888888888877653  46777888888888888888888888887764    234567788


Q ss_pred             HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH
Q 014860          216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYD  294 (417)
Q Consensus       216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~  294 (417)
                      .+..++...|+        +++|...|++..+..  |+. ..+...+....+..   .+... ..... .....+.....
T Consensus        77 ~lg~~~~~~g~--------~~~A~~~~~~al~l~--p~~~~~~~~~~~~~~~~~---~~~~~-~~~~~-~~~~~~~~i~~  141 (281)
T 2c2l_A           77 FLGQCQLEMES--------YDEAIANLQRAYSLA--KEQRLNFGDDIPSALRIA---KKKRW-NSIEE-RRIHQESELHS  141 (281)
T ss_dssp             HHHHHHHHTTC--------HHHHHHHHHHHHHHH--HHTTCCCCSHHHHHHHHH---HHHHH-HHHHH-TCCCCCCHHHH
T ss_pred             HHHHHHHHcCC--------HHHHHHHHHHHHHhC--ccchhhHHHHHHHHHHHH---HHHHH-HHHHH-HHHhhhHHHHH
Confidence            88888888888        888888887776532  110 01111111111111   11111 11111 12223333333


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 014860          295 YLIHGLCAQGRTKNARELCDEMKRKGFVPSSK-SYNSLVSALALN-GEVEETVKNLWEMIE  353 (417)
Q Consensus       295 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~~-g~~~~A~~~~~~m~~  353 (417)
                      .+ ..+ ..|++++|.+.+++..+.  .|+.. ....+-..+.+. +.+++|.++|.+..+
T Consensus       142 ~l-~~l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~  198 (281)
T 2c2l_A          142 YL-TRL-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE  198 (281)
T ss_dssp             HH-HHH-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             HH-HHH-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence            33 222 257777777777766553  44433 333333334443 567778888877655

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.33  E-value=2.2e-05  Score=60.13  Aligned_cols=100  Identities=13%  Similarity=0.081  Sum_probs=56.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 014860          289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLD  368 (417)
Q Consensus       289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  368 (417)
                      +...|..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|.+.+++..+.. +.+...+..+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~   92 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA   92 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence            44455555555666666666666666655432 1245555556666666666666666666655541 224455555556


Q ss_pred             HHHHcCCHhHHHHHHHHHHHCC
Q 014860          369 EICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       369 ~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      .|.+.|++++|.+.|++..+..
T Consensus        93 ~~~~~~~~~~A~~~~~~~~~~~  114 (133)
T 2lni_A           93 ALEAMKDYTKAMDVYQKALDLD  114 (133)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhhHHHHHHHHHHHHHhC
Confidence            6666666666666666655543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.31  E-value=5.3e-06  Score=67.72  Aligned_cols=121  Identities=10%  Similarity=0.099  Sum_probs=92.7

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH-HHHhCCH--
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF-FAEARKL--  189 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~-~~~~g~~--  189 (417)
                      ..|+++.|+..|+...+..  +.+...+..+...+...|++++|...++...+...  .+...+..+..+ |...|++  
T Consensus        22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG--ENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHhcCCcch
Confidence            4677888888888776543  45778888888888899999999999988887654  467777788887 7788888  


Q ss_pred             HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860          190 SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG  249 (417)
Q Consensus       190 ~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g  249 (417)
                      ++|...|++..+.    .+.+...|..+...+...|+        +++|...|++..+..
T Consensus        98 ~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~g~--------~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           98 AQTRAMIDKALAL----DSNEITALMLLASDAFMQAN--------YAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHh----CCCcHHHHHHHHHHHHHccc--------HHHHHHHHHHHHhhC
Confidence            9999999888875    13357778888888889998        899999998888764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.30  E-value=2.8e-05  Score=59.60  Aligned_cols=99  Identities=9%  Similarity=0.028  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI  216 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~  216 (417)
                      ...+......+.+.|++++|.+.|++..+..+  .+...|..+..+|.+.|++++|+..|++..+..    +.+...|..
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~----p~~~~a~~~   86 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP--ENAILYSNRAACLTKLMEFQRALDDCDTCIRLD----SKFIKGYIR   86 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh----hhhhHHHHH
Confidence            34566667778888888888888888877654  567888888888888888888888888887751    345777888


Q ss_pred             HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860          217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG  249 (417)
Q Consensus       217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g  249 (417)
                      +..++...|+        +++|.+.|++..+..
T Consensus        87 lg~~~~~~~~--------~~~A~~~~~~al~l~  111 (126)
T 4gco_A           87 KAACLVAMRE--------WSKAQRAYEDALQVD  111 (126)
T ss_dssp             HHHHHHHTTC--------HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCC--------HHHHHHHHHHHHHHC
Confidence            8888888888        888888888887753

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.29  E-value=5.1e-05  Score=57.59  Aligned_cols=117  Identities=13%  Similarity=0.044  Sum_probs=54.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860          255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSA  334 (417)
Q Consensus       255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~  334 (417)
                      ..+..+...+...|++++|...++......  +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN--PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            344444455555555555555555544311  1234444555555555555555555555544432 1134444455555


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 014860          335 LALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGR  375 (417)
Q Consensus       335 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  375 (417)
                      |...|++++|...|++..+.. +.+...+..+...+.+.|+
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred             HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence            555555555555555544431 1233344444444444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.28  E-value=6.2e-05  Score=55.95  Aligned_cols=107  Identities=12%  Similarity=0.017  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 014860          290 SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDE  369 (417)
Q Consensus       290 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  369 (417)
                      ...+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~   81 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAA   81 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence            3445556666666677777777776666542 2255666666667777777777777777666542 2345566666667


Q ss_pred             HHHcCCHhHHHHHHHHHHHCCCCChhhHH
Q 014860          370 ICRRGRAGEAMKLLKELQNKNLIDGYTYT  398 (417)
Q Consensus       370 ~~~~g~~~~A~~~~~~m~~~~~p~~~t~~  398 (417)
                      +...|++++|.+.+++..+.+..+...+.
T Consensus        82 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  110 (118)
T 1elw_A           82 LEFLNRFEEAKRTYEEGLKHEANNPQLKE  110 (118)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHcCCCCHHHHH
Confidence            77777777777777776665433433333

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.27  E-value=2e-05  Score=64.23  Aligned_cols=119  Identities=7%  Similarity=0.129  Sum_probs=73.0

Q ss_pred             ccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHH-HHhcCCc
Q 014860          149 AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTA-FLSRGKN  227 (417)
Q Consensus       149 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~-~~~~g~~  227 (417)
                      ..|++++|...++...+...  .+...+..+...|...|++++|...|++..+.    .+.+...|..+... +...|+ 
T Consensus        22 ~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~la~~l~~~~~~-   94 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANP--QNSEQWALLGEYYLWQNDYSNSLLAYRQALQL----RGENAELYAALATVLYYQASQ-   94 (177)
T ss_dssp             -----CCCCHHHHHHHHHCC--SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----HCSCHHHHHHHHHHHHHHTTT-
T ss_pred             hccCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHhcCC-
Confidence            45666667666666665543  45666777777777777777777777776654    12345566666666 556666 


Q ss_pred             cchhhhhH--HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860          228 TYINHVYM--ETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       228 ~~~~~~~~--~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  282 (417)
                             +  ++|...|++..+.. +-+...+..+...|...|++++|...|+...+
T Consensus        95 -------~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  143 (177)
T 2e2e_A           95 -------HMTAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD  143 (177)
T ss_dssp             -------CCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             -------cchHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence                   6  77777777666553 23455666666667777777777777766655

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.24  E-value=8.5e-06  Score=64.78  Aligned_cols=104  Identities=5%  Similarity=-0.098  Sum_probs=90.3

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN  215 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~  215 (417)
                      +...+..+...+.+.|++++|.+.|+...+..+  .+...|..+..+|.+.|++++|+..|++..+..    +-+...|.
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P--~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~----P~~~~~~~  108 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF--YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG----KNDYTPVF  108 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS----SSCCHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC----CCCcHHHH
Confidence            556777788889999999999999999998865  678899999999999999999999999998862    34578899


Q ss_pred             HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH
Q 014860          216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF  255 (417)
Q Consensus       216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~  255 (417)
                      .+-.+|...|+        +++|...|++..+..  |+..
T Consensus       109 ~lg~~~~~lg~--------~~eA~~~~~~al~l~--~~~~  138 (151)
T 3gyz_A          109 HTGQCQLRLKA--------PLKAKECFELVIQHS--NDEK  138 (151)
T ss_dssp             HHHHHHHHTTC--------HHHHHHHHHHHHHHC--CCHH
T ss_pred             HHHHHHHHcCC--------HHHHHHHHHHHHHhC--CCHH
Confidence            99999999999        999999999998764  5543

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.24  E-value=4.8e-05  Score=66.57  Aligned_cols=200  Identities=11%  Similarity=-0.072  Sum_probs=142.8

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHH-------HHHHHccCChhHHHHHHHHHHcC------------CCC----
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIM-------TRKLGAAKMYQEMDDVVNQMLAT------------PSF----  169 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~------------~~~----  169 (417)
                      ..+++..|.+.|..+.+..  +-....|..+       ...+.+.++..++...+..-.+.            |..    
T Consensus        18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~   95 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDIT   95 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCE
T ss_pred             cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccc
Confidence            5789999999999997654  4567777766       45555555556655555555441            100    


Q ss_pred             ---CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860          170 ---CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV  246 (417)
Q Consensus       170 ---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~  246 (417)
                         ..-....-.+...+...|++++|.++|+.+...     .|+......+-..+.+.++        +++|+..|+...
T Consensus        96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~-----~p~~~~~~~~a~l~~~~~r--------~~dA~~~l~~a~  162 (282)
T 4f3v_A           96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA-----GSEHLVAWMKAVVYGAAER--------WTDVIDQVKSAG  162 (282)
T ss_dssp             EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT-----TCHHHHHHHHHHHHHHTTC--------HHHHHHHHTTGG
T ss_pred             cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----CCchHHHHHHHHHHHHcCC--------HHHHHHHHHHhh
Confidence               001234556778899999999999999999875     3544466666668899999        999999998554


Q ss_pred             HCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014860          247 NDGIEPD--IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP--NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV  322 (417)
Q Consensus       247 ~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~  322 (417)
                      ... .|.  ...+..+-.++...|++++|++.|++... ....|  ........-.++.+.|+.++|..+|+++...  .
T Consensus       163 ~~~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~  238 (282)
T 4f3v_A          163 KWP-DKFLAGAAGVAHGVAAANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--H  238 (282)
T ss_dssp             GCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--S
T ss_pred             ccC-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--C
Confidence            422 111  23677788889999999999999999875 33324  3446677778899999999999999999986  4


Q ss_pred             CCHHHHHHH
Q 014860          323 PSSKSYNSL  331 (417)
Q Consensus       323 p~~~~~~~l  331 (417)
                      |+...+..|
T Consensus       239 P~~~~~~aL  247 (282)
T 4f3v_A          239 PEPKVAAAL  247 (282)
T ss_dssp             CCHHHHHHH
T ss_pred             CcHHHHHHH
Confidence            554444433

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.24  E-value=1.4e-05  Score=63.34  Aligned_cols=95  Identities=7%  Similarity=-0.088  Sum_probs=44.0

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD  253 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~  253 (417)
                      ..+..+...+.+.|++++|+..|+.....    -+.+...|..+-.++...|+        +++|++.|++..+.. +-+
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~l~-p~~   88 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL----DHYDSRFFLGLGACRQAMGQ--------YDLAIHSYSYGAVMD-IXE   88 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS-TTC
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHc----CcccHHHHHHHHHHHHHHhh--------HHHHHHHHHHHHhcC-CCC
Confidence            33444444445555555555555544443    12234444444445555555        555555555544432 223


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 014860          254 IFSLNSMIKGYILSNHVNDALRIFHQMG  281 (417)
Q Consensus       254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~  281 (417)
                      ...+..+-.+|...|++++|.+.|+...
T Consensus        89 ~~~~~~lg~~~~~~g~~~~A~~~~~~al  116 (148)
T 2vgx_A           89 PRFPFHAAECLLQXGELAEAESGLFLAQ  116 (148)
T ss_dssp             THHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            3444444444555555555555554443

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.23  E-value=4.3e-05  Score=69.60  Aligned_cols=134  Identities=13%  Similarity=0.011  Sum_probs=108.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860          253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN-------------SFSYDYLIHGLCAQGRTKNARELCDEMKRK  319 (417)
Q Consensus       253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  319 (417)
                      +...+..+-..|.+.|++++|...|++......-.++             ...|..+..+|.+.|++++|...+++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3456777888899999999999999988763211110             588999999999999999999999999886


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHH-HHHHHHHHH
Q 014860          320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEA-MKLLKELQN  388 (417)
Q Consensus       320 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A-~~~~~~m~~  388 (417)
                      . +.+...|..+..+|...|++++|...|++..+. .+-+...+..+...+.+.|+.++| ..+++.|..
T Consensus       226 ~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          226 D-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQL-YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             C-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4 237889999999999999999999999999886 234667888888999999999988 456666653

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.22  E-value=2.4e-05  Score=62.15  Aligned_cols=96  Identities=8%  Similarity=-0.013  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC  371 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  371 (417)
                      .+..+-..+.+.|++++|...|++...... -+...|..+-.+|...|++++|...|++..+.. +-+...|..+..+|.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence            344444445555555555555555544321 134445555555555555555555555554431 123344444555555


Q ss_pred             HcCCHhHHHHHHHHHHHC
Q 014860          372 RRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       372 ~~g~~~~A~~~~~~m~~~  389 (417)
                      ..|++++|...|++..+.
T Consensus       116 ~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            555555555555555443

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.21  E-value=9e-05  Score=57.80  Aligned_cols=107  Identities=10%  Similarity=-0.055  Sum_probs=70.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 014860          289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS----SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYR  364 (417)
Q Consensus       289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~  364 (417)
                      +...+..+...+...|++++|...|++..+.  .|+    ...|..+..+|...|++++|...+++..+.. +.+...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence            4566666667777777777777777776654  344    5666667777777777777777777766642 23456666


Q ss_pred             HHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHH
Q 014860          365 TVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYT  398 (417)
Q Consensus       365 ~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~  398 (417)
                      .+..+|...|++++|.+.|++.......+...+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~  137 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQE  137 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHH
Confidence            6777777777777777777777765432444433

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.20  E-value=5.6e-05  Score=57.57  Aligned_cols=98  Identities=17%  Similarity=0.124  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014860          291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI  370 (417)
Q Consensus       291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  370 (417)
                      ..|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.. +-+...|..+..++
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~   82 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ   82 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence            345555566666777777777776666542 2245666667777777777777777777666642 23455666666677


Q ss_pred             HHcCCHhHHHHHHHHHHHCC
Q 014860          371 CRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       371 ~~~g~~~~A~~~~~~m~~~~  390 (417)
                      ...|++++|...|++..+..
T Consensus        83 ~~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           83 IAVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHHHHHHhC
Confidence            77777777777777666554

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.19  E-value=0.00012  Score=64.69  Aligned_cols=193  Identities=9%  Similarity=-0.027  Sum_probs=132.9

Q ss_pred             CCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC
Q 014860          171 GTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI  250 (417)
Q Consensus       171 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~  250 (417)
                      .+...+..+...+.+.|++++|+..|++..+.    .+.+...|..+...+...|+        +++|++.+++..+.. 
T Consensus         2 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~-   68 (281)
T 2c2l_A            2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR----NPLVAVYYTNRALCYLKMQQ--------PEQALADCRRALELD-   68 (281)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CSCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTSC-
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-
Confidence            45677888999999999999999999999885    13478889999999999999        999999999998764 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014860          251 EPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVY---NYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS  327 (417)
Q Consensus       251 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~  327 (417)
                      +-+...+..+..+|...|++++|.+.|+...+..   ....+...+..+  ...+      +. -+..........+...
T Consensus        69 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~--~~~~------~~-~~~~~~~~~~~~~~~i  139 (281)
T 2c2l_A           69 GQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL--RIAK------KK-RWNSIEERRIHQESEL  139 (281)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH--HHHH------HH-HHHHHHHTCCCCCCHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH--HHHH------HH-HHHHHHHHHHhhhHHH
Confidence            4467888999999999999999999998875521   111111222222  1111      11 1222333334444444


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHHc-CCHhHHHHHHHHHHHC
Q 014860          328 YNSLVSALALNGEVEETVKNLWEMIEKQRPVDFIT-YRTVLDEICRR-GRAGEAMKLLKELQNK  389 (417)
Q Consensus       328 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~~li~~~~~~-g~~~~A~~~~~~m~~~  389 (417)
                      ...+ ..+ ..|+.++|.+.+++..+.  .|+... ...+-..+.+. +.+++|.++|.+..+.
T Consensus       140 ~~~l-~~l-~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          140 HSYL-TRL-IAAERERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHHH-HHH-HHHHHHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHH-HHH-HHHHHHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            4433 333 368889999888877654  555443 33443344444 6788999999887664

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.17  E-value=0.00015  Score=68.12  Aligned_cols=198  Identities=7%  Similarity=-0.056  Sum_probs=132.2

Q ss_pred             HHHccCChhHHHHHHHHHHcCCCCCCC---------------HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC
Q 014860          146 KLGAAKMYQEMDDVVNQMLATPSFCGT---------------EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS  210 (417)
Q Consensus       146 ~~~~~~~~~~a~~~~~~m~~~~~~~~~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~  210 (417)
                      .+...|++++|.+.+..+.+......+               ...+..+...|.+.|++++|.+.+..+.+..  +..++
T Consensus        13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~--~~~~~   90 (434)
T 4b4t_Q           13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYM--MQFAK   90 (434)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHH--HTSCH
T ss_pred             HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHccc
Confidence            445566677777766666654332111               1246778899999999999999998876531  11122


Q ss_pred             HH----HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 014860          211 IR----SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN----DGIEPD-IFSLNSMIKGYILSNHVNDALRIFHQMG  281 (417)
Q Consensus       211 ~~----~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  281 (417)
                      ..    +.+.+-..+...|+        .++|.+++++...    .+..+. ..++..+...|...|++++|..++++..
T Consensus        91 ~~~~~~~~~~l~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~  162 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKFEQVPDS--------LDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL  162 (434)
T ss_dssp             HHHHHHHHHHHHHHCSCCSC--------HHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence            21    22222233334566        8888888877653    333333 4577788999999999999999998875


Q ss_pred             hhCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC-C-C--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 014860          282 VVYNY----LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRK--GFV-P-S--SKSYNSLVSALALNGEVEETVKNLWEM  351 (417)
Q Consensus       282 ~~~~~----~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~-p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m  351 (417)
                      ....-    .-....+..++..|...|++++|..+++.....  .+. | .  ...+..+...+...|++++|...|.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          163 REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            42111    123567888899999999999999999877642  122 1 1  345667777788889999998888777


Q ss_pred             HH
Q 014860          352 IE  353 (417)
Q Consensus       352 ~~  353 (417)
                      .+
T Consensus       243 ~~  244 (434)
T 4b4t_Q          243 FE  244 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.17  E-value=5.4e-05  Score=59.85  Aligned_cols=97  Identities=11%  Similarity=-0.029  Sum_probs=52.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 014860          291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEI  370 (417)
Q Consensus       291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  370 (417)
                      ..+..+...+...|++++|...|++...... .+...|..+-.+|...|++++|...|++..+.. +-+...|..+..+|
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence            3444445555555666666666655554321 245555555555666666666666666555531 22334555555556


Q ss_pred             HHcCCHhHHHHHHHHHHHC
Q 014860          371 CRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       371 ~~~g~~~~A~~~~~~m~~~  389 (417)
                      ...|++++|.+.|++..+.
T Consensus       100 ~~~g~~~~A~~~~~~al~~  118 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQEL  118 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            6666666666666655543

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.16  E-value=5.2e-05  Score=69.01  Aligned_cols=150  Identities=11%  Similarity=0.005  Sum_probs=100.6

Q ss_pred             cCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----------------HHH
Q 014860          150 AKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----------------IRS  213 (417)
Q Consensus       150 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----------------~~~  213 (417)
                      .+++++|.+.++...+...  .+...+..+...|.+.|++++|+..|++..+.     .|+                ...
T Consensus       126 L~~~~~A~~~~~~a~~~~p--~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~~~~  198 (336)
T 1p5q_A          126 LKSFEKAKESWEMNSEEKL--EQSTIVKERGTVYFKEGKYKQALLQYKKIVSW-----LEYESSFSNEEAQKAQALRLAS  198 (336)
T ss_dssp             EEEEECCCCGGGCCHHHHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----TTTCCCCCSHHHHHHHHHHHHH
T ss_pred             EeecccccchhcCCHHHHH--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----hhccccCChHHHHHHHHHHHHH
Confidence            3444555544443332211  24678888999999999999999999999875     333                467


Q ss_pred             HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHH
Q 014860          214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSY  293 (417)
Q Consensus       214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~  293 (417)
                      |..+..++.+.|+        +++|+..|++..+.. +.+...|..+-.+|...|++++|...|++..+..  +.+...+
T Consensus       199 ~~nla~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~  267 (336)
T 1p5q_A          199 HLNLAMCHLKLQA--------FSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY--PNNKAAK  267 (336)
T ss_dssp             HHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHH
T ss_pred             HHHHHHHHHHcCC--------HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC--CCCHHHH
Confidence            7777777777777        777877777777654 3456677777777777777777777777766521  2345566


Q ss_pred             HHHHHHHHhcCCHHHH-HHHHHHHH
Q 014860          294 DYLIHGLCAQGRTKNA-RELCDEMK  317 (417)
Q Consensus       294 ~~li~~~~~~g~~~~A-~~l~~~m~  317 (417)
                      ..+...+.+.|+.++| ..+++.|.
T Consensus       268 ~~l~~~~~~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          268 TQLAVCQQRIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666677777776666 33444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.16  E-value=0.00013  Score=54.19  Aligned_cols=99  Identities=8%  Similarity=-0.017  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI  216 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~  216 (417)
                      ...+..+...+...|++++|...++...+...  .+...+..+...|.+.|++++|...+++..+.    .+.+...|..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~   77 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL----KPDWGKGYSR   77 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH----CTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh----CcccHHHHHH
Confidence            45566677777788888888888888877653  46777778888888888888888888887765    1335677788


Q ss_pred             HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860          217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG  249 (417)
Q Consensus       217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g  249 (417)
                      +...+...|+        +++|.+.+++..+..
T Consensus        78 ~a~~~~~~~~--------~~~A~~~~~~~~~~~  102 (118)
T 1elw_A           78 KAAALEFLNR--------FEEAKRTYEEGLKHE  102 (118)
T ss_dssp             HHHHHHHTTC--------HHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhh--------HHHHHHHHHHHHHcC
Confidence            8888888888        888888888877654

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.14  E-value=0.0012  Score=63.25  Aligned_cols=47  Identities=15%  Similarity=0.234  Sum_probs=36.4

Q ss_pred             HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          190 SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       190 ~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      +++..+|+++...    ++-+...|-..+.-+.+.|+        .++|.++|++....
T Consensus       196 ~Rv~~~ye~al~~----~p~~~~lW~~ya~~~~~~~~--------~~~ar~i~erAi~~  242 (493)
T 2uy1_A          196 SRMHFIHNYILDS----FYYAEEVYFFYSEYLIGIGQ--------KEKAKKVVERGIEM  242 (493)
T ss_dssp             HHHHHHHHHHHHH----TTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc----CCCCHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHhC
Confidence            3456677777763    34557788888888888999        99999999988876

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.13  E-value=0.00014  Score=68.20  Aligned_cols=201  Identities=8%  Similarity=-0.059  Sum_probs=141.2

Q ss_pred             HHHHHHhCCHHHHHHHHHHhHhCCCCCCC-------C------CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH
Q 014860          180 IYFFAEARKLSRAVYVFKYMKNSRNLECR-------P------SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV  246 (417)
Q Consensus       180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~~-------p------~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~  246 (417)
                      .+.+.+.|++++|++.|..+.+.......       .      ...++..+...|...|+        +++|.+++.++.
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~--------~~~a~~~~~~~~   82 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA--------KDKLREFIPHST   82 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHTH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHH
Confidence            45678899999999999999875211000       0      01347789999999999        999999998876


Q ss_pred             HC-CCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860          247 ND-GIEPDIF----SLNSMIKGYILSNHVNDALRIFHQMGVV---YNYL-PNSFSYDYLIHGLCAQGRTKNARELCDEMK  317 (417)
Q Consensus       247 ~~-g~~p~~~----~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~-~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  317 (417)
                      +. +-.++..    +.+.+-..+...|+.+.|.+++......   .+.. .-..++..+...|...|++++|..++.+..
T Consensus        83 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~  162 (434)
T 4b4t_Q           83 EYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL  162 (434)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence            42 1112221    2223333344568899999988876431   2222 235678889999999999999999999876


Q ss_pred             HC--CC--CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCC-C-C--HHHHHHHHHHHHHcCCHhHHHHHHHHH
Q 014860          318 RK--GF--VP-SSKSYNSLVSALALNGEVEETVKNLWEMIEK--QRP-V-D--FITYRTVLDEICRRGRAGEAMKLLKEL  386 (417)
Q Consensus       318 ~~--g~--~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~--g~~-p-~--~~~~~~li~~~~~~g~~~~A~~~~~~m  386 (417)
                      ..  +.  ++ ...++..++..|...|++++|..++++....  .+. | .  ...+..+...+...|++++|...|.+.
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a  242 (434)
T 4b4t_Q          163 REFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES  242 (434)
T ss_dssp             HHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred             HHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            43  21  22 2467889999999999999999999987654  121 1 1  235666667778899999999888776


Q ss_pred             HH
Q 014860          387 QN  388 (417)
Q Consensus       387 ~~  388 (417)
                      .+
T Consensus       243 ~~  244 (434)
T 4b4t_Q          243 FE  244 (434)
T ss_dssp             HH
T ss_pred             HH
Confidence            54

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.12  E-value=0.00011  Score=59.00  Aligned_cols=98  Identities=15%  Similarity=0.041  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS  333 (417)
Q Consensus       254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~  333 (417)
                      ...+..+-..+.+.|++++|.+.|++..+..  +.+...|..+..+|...|++++|+..|++..+... -+...|..+..
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~   87 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            3445555555666666666666666555421  22455555555666666666666666665555421 13555555666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHc
Q 014860          334 ALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       334 ~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      +|...|++++|...|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            666666666666666655544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.09  E-value=5.6e-06  Score=69.03  Aligned_cols=157  Identities=6%  Similarity=-0.088  Sum_probs=85.7

Q ss_pred             HHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC---C-----------H
Q 014860          146 KLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP---S-----------I  211 (417)
Q Consensus       146 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p---~-----------~  211 (417)
                      .....|+++++.+.++.-.....  .....+..+...+.+.|++++|+..|++..+..  .-.|   .           .
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~~~~~~   88 (198)
T 2fbn_A           13 GRENLYFQGAKKSIYDYTDEEKV--QSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQILLDKKKNIEI   88 (198)
T ss_dssp             ---------CCCSGGGCCHHHHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCHHHHHHHHHHHH
T ss_pred             hhhhhhhccccCchhhCCHHHHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchhhHHHHHHHHHH
Confidence            34445555555555543222111  234567777888888999999999999888741  0011   1           2


Q ss_pred             HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860          212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSF  291 (417)
Q Consensus       212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  291 (417)
                      ..|..+..++...|+        +++|+..+++..+.. +.+...+..+-.+|...|++++|.+.|+...+..  +-+..
T Consensus        89 ~~~~~la~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~  157 (198)
T 2fbn_A           89 SCNLNLATCYNKNKD--------YPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN--PNNLD  157 (198)
T ss_dssp             HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--TTCHH
T ss_pred             HHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC--CCcHH
Confidence            566677777777777        777777777776653 3355666666677777777777777777665421  22445


Q ss_pred             HHHHHHHHHHhcCCHHHHH-HHHHHHH
Q 014860          292 SYDYLIHGLCAQGRTKNAR-ELCDEMK  317 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~-~l~~~m~  317 (417)
                      .+..+...+...++.+++. ..+..|.
T Consensus       158 ~~~~l~~~~~~~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          158 IRNSYELCVNKLKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHHHHHHHHHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5555555555555555444 3344443

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.09  E-value=4.4e-05  Score=56.24  Aligned_cols=99  Identities=15%  Similarity=-0.028  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 014860          291 FSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPV--DFITYRTVLD  368 (417)
Q Consensus       291 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~  368 (417)
                      ..|..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.  +...+..+..
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~   84 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD   84 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence            344555566666677777777776666542 2245666667777777777777777777766642 22  4566666767


Q ss_pred             HHHHc-CCHhHHHHHHHHHHHCCC
Q 014860          369 EICRR-GRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       369 ~~~~~-g~~~~A~~~~~~m~~~~~  391 (417)
                      .+... |++++|.+.+++......
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p  108 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHH  108 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhccc
Confidence            77777 777777777777766543

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.08  E-value=8.3e-05  Score=58.15  Aligned_cols=96  Identities=8%  Similarity=-0.078  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC  371 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  371 (417)
                      .+..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|...|++..+.. +-+...+..+..+|.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence            344445555666666666666666655422 245556666666666666666666666666542 223445555666666


Q ss_pred             HcCCHhHHHHHHHHHHHC
Q 014860          372 RRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       372 ~~g~~~~A~~~~~~m~~~  389 (417)
                      ..|++++|.+.|++..+.
T Consensus        98 ~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            666666666666665554

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.07  E-value=0.00012  Score=55.65  Aligned_cols=98  Identities=9%  Similarity=0.022  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI  216 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~  216 (417)
                      ...+......+.+.|++++|.+.++...+...  .+...|..+..+|.+.|++++|+..|++..+..    +.+...|..
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~   77 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP--EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD----PNFVRAYIR   77 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----CCcHHHHHH
Confidence            34566666777788888888888888877654  567788888888888888888888888887751    335677888


Q ss_pred             HHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      +..++...|+        +++|.+.|++..+.
T Consensus        78 lg~~~~~~~~--------~~~A~~~~~~al~~  101 (126)
T 3upv_A           78 KATAQIAVKE--------YASALETLDAARTK  101 (126)
T ss_dssp             HHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhC--------HHHHHHHHHHHHHh
Confidence            8888888888        88888888877654

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.07  E-value=5.2e-05  Score=57.62  Aligned_cols=114  Identities=7%  Similarity=0.035  Sum_probs=90.1

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HH
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IR  212 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~  212 (417)
                      ...+..+...+...|++++|...++...+...  .+...+..+...|...|++++|...|++..+... ...++    ..
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~   80 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGR-ENREDYRQIAK   80 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH-HSTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC--ccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-ccchhHHHHHH
Confidence            45677788888999999999999999988754  5778899999999999999999999999877510 01122    67


Q ss_pred             HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860          213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG  263 (417)
Q Consensus       213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  263 (417)
                      +|..+...+...|+        +++|.+.|++..+..  |+......+-..
T Consensus        81 ~~~~la~~~~~~~~--------~~~A~~~~~~~~~~~--~~~~~~~~l~~~  121 (131)
T 1elr_A           81 AYARIGNSYFKEEK--------YKDAIHFYNKSLAEH--RTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcc--------HHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence            88889999999999        999999999988753  565555544433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.07  E-value=0.00013  Score=58.51  Aligned_cols=97  Identities=6%  Similarity=-0.113  Sum_probs=50.3

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC
Q 014860          173 EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP  252 (417)
Q Consensus       173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p  252 (417)
                      ...+..+...|.+.|++++|+..|++..+.    .+.+...|..+..+|...|+        +++|+..|++..+.. +-
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~--------~~~A~~~~~~al~~~-p~   77 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI----APANPIYLSNRAAAYSASGQ--------HEKAAEDAELATVVD-PK   77 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCcCHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-CC
Confidence            344455555555555555555555555543    12244555555555555555        555555555555443 22


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860          253 DIFSLNSMIKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      +...|..+-.+|...|++++|.+.|++..+
T Consensus        78 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  107 (164)
T 3sz7_A           78 YSKAWSRLGLARFDMADYKGAKEAYEKGIE  107 (164)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            344555555555555555555555555543

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.06  E-value=0.00017  Score=55.61  Aligned_cols=100  Identities=9%  Similarity=-0.046  Sum_probs=60.4

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 014860          288 PNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVL  367 (417)
Q Consensus       288 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  367 (417)
                      .+...|..+...+...|++++|...|++...... .+...|..+..+|...|++++|...+++..+.. +-+...|..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence            3455566666666666666666666666555422 245566666666666666666666666666542 22455666666


Q ss_pred             HHHHHcCCHhHHHHHHHHHHHC
Q 014860          368 DEICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       368 ~~~~~~g~~~~A~~~~~~m~~~  389 (417)
                      .+|...|++++|...|++....
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            6666666666666666665543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.05  E-value=0.00025  Score=53.71  Aligned_cols=97  Identities=10%  Similarity=0.045  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHH
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQ--RPVD----FITYRT  365 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g--~~p~----~~~~~~  365 (417)
                      .|..+...+...|++++|...|++..+.. +.+...+..+...|...|++++|...+++..+..  ..++    ..+|..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            34444445555555555555555554432 2234445555555555555555555555554431  1111    344555


Q ss_pred             HHHHHHHcCCHhHHHHHHHHHHHC
Q 014860          366 VLDEICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       366 li~~~~~~g~~~~A~~~~~~m~~~  389 (417)
                      +...|...|++++|.+.|++..+.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh
Confidence            555555555555555555555553

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.03  E-value=0.00017  Score=55.55  Aligned_cols=101  Identities=9%  Similarity=0.052  Sum_probs=85.4

Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHH
Q 014860          134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRS  213 (417)
Q Consensus       134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~  213 (417)
                      +.+...+..+...+...|++++|...+....+...  .+...+..+..+|...|++++|...|+...+..    +.+...
T Consensus         6 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~----p~~~~~   79 (137)
T 3q49_B            6 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALELD----GQSVKA   79 (137)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHH
T ss_pred             cccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc--CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC----chhHHH
Confidence            45678888888899999999999999999888764  567888999999999999999999999988751    346788


Q ss_pred             HHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          214 YNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       214 ~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      |..+...+...|+        +++|...|++..+.
T Consensus        80 ~~~l~~~~~~~~~--------~~~A~~~~~~a~~~  106 (137)
T 3q49_B           80 HFFLGQCQLEMES--------YDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhh--------HHHHHHHHHHHHHH
Confidence            8999999999999        99999999887753

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.02  E-value=0.00035  Score=54.34  Aligned_cols=97  Identities=10%  Similarity=-0.006  Sum_probs=48.9

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC----HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT----EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSI  211 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~  211 (417)
                      +...+..+...+...|++++|.+.++...+..   |+    ...+..+...|.+.|++++|+..|++..+.    .+.+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~----~~~~~   99 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK----DGGDV   99 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TSCCH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh----CccCH
Confidence            34444444455555555555555555555433   22    344555555555555555555555555443    12234


Q ss_pred             HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860          212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN  247 (417)
Q Consensus       212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~  247 (417)
                      ..|..+...+...|+        +++|.+.|++..+
T Consensus       100 ~~~~~~a~~~~~~~~--------~~~A~~~~~~al~  127 (148)
T 2dba_A          100 KALYRRSQALEKLGR--------LDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHHHHHHHTC--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCC--------HHHHHHHHHHHHH
Confidence            445555555555555        5555555555544

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.02  E-value=0.0057  Score=54.89  Aligned_cols=232  Identities=9%  Similarity=-0.004  Sum_probs=124.0

Q ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhc
Q 014860          155 EMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK----------LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSR  224 (417)
Q Consensus       155 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~  224 (417)
                      +|.++.+.+....+  .+..+|+.--..+...+.          +++++.+++.+...    .+-+..+|+.---.+...
T Consensus        48 eaL~~t~~~L~~nP--~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~----~PKny~aW~hR~wlL~~l  121 (331)
T 3dss_A           48 SVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWLLSRL  121 (331)
T ss_dssp             HHHHHHHHHHTTCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHCc--hhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHhcc
Confidence            45555555555443  333444433222222222          45666666666553    133555566555555555


Q ss_pred             CCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhc
Q 014860          225 GKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH-VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQ  303 (417)
Q Consensus       225 g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  303 (417)
                      ++..      +++++++++.+.+.. +-|-.+|+----.+...|. ++++++.++.+.+. . +-|...|+.....+.+.
T Consensus       122 ~~~~------~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~-~-p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          122 PEPN------WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-N-FSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             SSCC------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-C-SCCHHHHHHHHHHHHHH
T ss_pred             Cccc------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH-C-CCCHHHHHHHHHHHHHh
Confidence            5200      566666666666544 3355555555555555555 46666666666552 2 24555555544444433


Q ss_pred             --------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCC
Q 014860          304 --------------GRTKNARELCDEMKRKGFVPSSKSYNSLVSALALN-----------GEVEETVKNLWEMIEKQRPV  358 (417)
Q Consensus       304 --------------g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p  358 (417)
                                    +.++++++.+......... |...|+-+-..+.+.           +.++++++.++++.+.  .|
T Consensus       193 ~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~p  269 (331)
T 3dss_A          193 HPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EP  269 (331)
T ss_dssp             SCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CT
T ss_pred             hhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cc
Confidence                          3466777777776665322 666666554444444           4577888888888875  45


Q ss_pred             CHH-HHHHHHH---HHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHH
Q 014860          359 DFI-TYRTVLD---EICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVL  404 (417)
Q Consensus       359 ~~~-~~~~li~---~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~  404 (417)
                      |.. .+.+++.   +....|..+++...+.++++.+.-...-|.-+-+.+
T Consensus       270 d~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~~  319 (331)
T 3dss_A          270 ENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  319 (331)
T ss_dssp             TCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHHH
Confidence            442 2222221   122356777888888888876643444555554443

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.01  E-value=0.00018  Score=59.71  Aligned_cols=135  Identities=13%  Similarity=0.064  Sum_probs=95.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 014860          254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN--------------SFSYDYLIHGLCAQGRTKNARELCDEMKRK  319 (417)
Q Consensus       254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~--------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~  319 (417)
                      ...+..+-..+.+.|++++|.+.|++......-.++              ...|..+..+|...|++++|...+++..+.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            345666777888999999999999988762222221              267888888999999999999999998876


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH-HHHHHHHHCC
Q 014860          320 GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAM-KLLKELQNKN  390 (417)
Q Consensus       320 g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~~  390 (417)
                      . +.+...+..+..+|...|++++|...|++..+.. +-+...+..+...+...++.+++. ..+..|...+
T Consensus       118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~  187 (198)
T 2fbn_A          118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG  187 (198)
T ss_dssp             S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred             C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            3 3367888889999999999999999999988762 335667777777777777777766 5666665554

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.01  E-value=4.3e-05  Score=56.33  Aligned_cols=96  Identities=13%  Similarity=0.035  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC--CHHHHHH
Q 014860          139 TYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP--SIRSYNI  216 (417)
Q Consensus       139 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p--~~~~~~~  216 (417)
                      .+..+...+...|++++|...++...+...  .+...+..+...+.+.|++++|.+.|++..+..    +.  +...|..
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~----~~~~~~~~~~~   81 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP--EESKYWLMKGKALYNLERYEEAVDCYNYVINVI----EDEYNKDVWAA   81 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS----CCTTCHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----cccchHHHHHH
Confidence            344444555555555555555555554432  344555555556666666666666666655531    22  3555555


Q ss_pred             HHHHHHhc-CCccchhhhhHHHHHHHHHHHHHC
Q 014860          217 LFTAFLSR-GKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       217 li~~~~~~-g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      +...+... |+        .++|.+.+++..+.
T Consensus        82 l~~~~~~~~~~--------~~~A~~~~~~~~~~  106 (112)
T 2kck_A           82 KADALRYIEGK--------EVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHHHTTCSSC--------SHHHHHHHHHHGGG
T ss_pred             HHHHHHHHhCC--------HHHHHHHHHHHhhc
Confidence            55566666 65        56666666555543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.00  E-value=0.00012  Score=56.01  Aligned_cols=110  Identities=12%  Similarity=0.110  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC----HH
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS----IR  212 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~----~~  212 (417)
                      ..++..+...+.+.|++++|.+.|++.++..+  .+...|+.+..+|.+.|++++|++.|++..+... ...++    ..
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p--~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~   84 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDP--SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGR-ETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-HTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCc-ccchhhHHHHH
Confidence            34566788889999999999999999988764  6788999999999999999999999998876410 01111    24


Q ss_pred             HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860          213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS  259 (417)
Q Consensus       213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  259 (417)
                      +|..+-..+...|+        +++|++.|++..+.  .||..+...
T Consensus        85 ~~~~lg~~~~~~~~--------~~~A~~~~~kal~~--~~~~~~~~~  121 (127)
T 4gcn_A           85 AMSRAGNAFQKQND--------LSLAVQWFHRSLSE--FRDPELVKK  121 (127)
T ss_dssp             HHHHHHHHHHHTTC--------HHHHHHHHHHHHHH--SCCHHHHHH
T ss_pred             HHHHHHHHHHHcCC--------HHHHHHHHHHHHhh--CcCHHHHHH
Confidence            67778888999999        99999999998764  466555443

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=97.98  E-value=0.00013  Score=57.05  Aligned_cols=99  Identities=7%  Similarity=-0.054  Sum_probs=77.8

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN  215 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~  215 (417)
                      +...+..+...+.+.|++++|...++......+  .+...|..+..+|.+.|++++|+..|+......    +.+...|.
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~----p~~~~~~~   90 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDH--YDARYFLGLGACRQSLGLYEQALQSYSYGALMD----INEPRFPF   90 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCTHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCcHHHH
Confidence            344555566677888899999988888887654  577888888888888999999999998888751    34567788


Q ss_pred             HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      .+..++...|+        +++|.+.|+...+.
T Consensus        91 ~lg~~~~~~g~--------~~~A~~~~~~al~~  115 (142)
T 2xcb_A           91 HAAECHLQLGD--------LDGAESGFYSARAL  115 (142)
T ss_dssp             HHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCC--------HHHHHHHHHHHHHh
Confidence            88888888888        88888888887754

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.97  E-value=6.6e-05  Score=57.03  Aligned_cols=95  Identities=7%  Similarity=-0.081  Sum_probs=83.3

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFF  183 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~  183 (417)
                      +..+...+.+.|++++|+..|+.+.+..  +.+...|..+..++...|++++|...+++..+..+  .+...+..+..+|
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P--~~~~~~~~la~~~   95 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSH   95 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHH
Confidence            4456667788999999999999997654  56889999999999999999999999999998765  5778999999999


Q ss_pred             HHhCCHHHHHHHHHHhHhC
Q 014860          184 AEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       184 ~~~g~~~~a~~~~~~m~~~  202 (417)
                      .+.|++++|+..|++..+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            9999999999999999865

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.96  E-value=9.8e-05  Score=58.31  Aligned_cols=134  Identities=13%  Similarity=0.091  Sum_probs=101.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CH
Q 014860          255 FSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN----SFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVP-SS  325 (417)
Q Consensus       255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~  325 (417)
                      .++..+-..|...|++++|.+.+++..+...-..+    ...+..+...+...|++++|.+.+++..+.    +..+ ..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            46777888889999999999999887552111122    247788888999999999999999987653    1111 14


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          326 KSYNSLVSALALNGEVEETVKNLWEMIEK----QRPV-DFITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      ..+..+...+...|++++|.+.+++..+.    +..+ ....+..+...|...|++++|.+.+++..+
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            56788888999999999999999987754    2111 134677788889999999999999988765

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=97.94  E-value=0.00013  Score=55.79  Aligned_cols=106  Identities=13%  Similarity=0.016  Sum_probs=84.9

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCC-CC----HHHHHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFC-GT----EALYNT  178 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~----~~~~~~  178 (417)
                      +..+...+.+.|++++|++.|+.+.+..  +-+...|..+..++...|++++|.+.++..++..... .+    ..+|..
T Consensus        11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~--p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           11 EKDLGNAAYKQKDFEKAHVHYDKAIELD--PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            4456778889999999999999987654  5678899999999999999999999999988753211 11    246778


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHH
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNI  216 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~  216 (417)
                      +..++...|++++|++.|++..+.     .||......
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~~-----~~~~~~~~~  121 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLSE-----FRDPELVKK  121 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH-----SCCHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhh-----CcCHHHHHH
Confidence            888999999999999999998875     566655433

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=97.92  E-value=0.00013  Score=57.56  Aligned_cols=136  Identities=13%  Similarity=0.033  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCC
Q 014860          211 IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE-PD----IFSLNSMIKGYILSNHVNDALRIFHQMGVVYN  285 (417)
Q Consensus       211 ~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  285 (417)
                      ..++..+...+...|+        +++|.+.+++..+..-. .+    ..++..+...+...|++++|.+.++.......
T Consensus         9 ~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~   80 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGN--------FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLAR   80 (164)
T ss_dssp             HHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence            4567888889999999        99999999887753111 11    24778888899999999999999998754211


Q ss_pred             CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          286 YLPN----SFSYDYLIHGLCAQGRTKNARELCDEMKRK----GFVP-SSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       286 ~~~~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      -..+    ...+..+...+...|++++|.+.+++..+.    +..+ ....+..+...|...|++++|.+.+++..+.
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           81 QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            1112    456778888899999999999999887643    2111 1356788889999999999999999987653

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.90  E-value=1.8e-05  Score=59.63  Aligned_cols=104  Identities=15%  Similarity=0.120  Sum_probs=58.9

Q ss_pred             cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHH
Q 014860          303 QGRTKNARELCDEMKRKGF--VPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAM  380 (417)
Q Consensus       303 ~g~~~~A~~l~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~  380 (417)
                      .|++++|+..|++..+.+.  +-+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHHH
Confidence            4566666666666665431  1234556666667777777777777777766652 224556666666777777777777


Q ss_pred             HHHHHHHHCCC--CChhhHHHHHHHHHhh
Q 014860          381 KLLKELQNKNL--IDGYTYTKLLDVLEDD  407 (417)
Q Consensus       381 ~~~~~m~~~~~--p~~~t~~~ll~~~~~~  407 (417)
                      ..+++......  ++...|...+..+.+.
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai~~~~~~  110 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAILFYADK  110 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence            77776665533  2333444444444433

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=97.88  E-value=0.0094  Score=53.50  Aligned_cols=221  Identities=10%  Similarity=0.007  Sum_probs=157.5

Q ss_pred             ccCC-hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860          113 LQED-PLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKM----------YQEMDDVVNQMLATPSFCGTEALYNTIIY  181 (417)
Q Consensus       113 ~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~~li~  181 (417)
                      ..|. .++|++++..+....  +-+..+|+.--..+...+.          ++++..+++.+....+  .+..+|+.-.-
T Consensus        41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P--Kny~aW~hR~w  116 (331)
T 3dss_A           41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTWHHRCW  116 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC--CCHHHHHHHHH
Confidence            3444 568999999997544  3455556654444433333          6788999999988665  68888988888


Q ss_pred             HHHHhC--CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHH
Q 014860          182 FFAEAR--KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS  259 (417)
Q Consensus       182 ~~~~~g--~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~  259 (417)
                      .+.+.|  .+++++.+++.+.+.    -+-|..+|+.-.-.+...|.       ..+++++.++++.+.. +-|...|+-
T Consensus       117 lL~~l~~~~~~~EL~~~~k~l~~----dprNy~AW~~R~~vl~~l~~-------~~~eel~~~~~~I~~~-p~N~SAW~~  184 (331)
T 3dss_A          117 LLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAV-------APAEELAFTDSLITRN-FSNYSSWHY  184 (331)
T ss_dssp             HHHHCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC-------CHHHHHHHHHHHHHHC-SCCHHHHHH
T ss_pred             HHhccCcccHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhCc-------CHHHHHHHHHHHHHHC-CCCHHHHHH
Confidence            888888  489999999999986    25678899988888888776       1489999999999876 457777876


Q ss_pred             HHHHHHhc--------------CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHH
Q 014860          260 MIKGYILS--------------NHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQ-----------GRTKNARELCD  314 (417)
Q Consensus       260 li~~~~~~--------------g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----------g~~~~A~~l~~  314 (417)
                      ....+.+.              +.++++++.++.....  -+-|...|+.+-..+.+.           +.++++++.++
T Consensus       185 R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~  262 (331)
T 3dss_A          185 RSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCK  262 (331)
T ss_dssp             HHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHH
Confidence            65555544              4578888888887752  245788888666666555           45789999999


Q ss_pred             HHHHCCCCCCHHHHHHHH-----HHHHhcCCHHHHHHHHHHHHHc
Q 014860          315 EMKRKGFVPSSKSYNSLV-----SALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       315 ~m~~~g~~p~~~~~~~li-----~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      ++.+.  .||. .|+.+-     .+....|..+++...+.++.+-
T Consensus       263 elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          263 ELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence            99875  4554 343222     1222457777888888888874

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=97.86  E-value=0.00022  Score=54.05  Aligned_cols=94  Identities=13%  Similarity=-0.022  Sum_probs=57.1

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860          294 DYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR  373 (417)
Q Consensus       294 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  373 (417)
                      ..+...+.+.|++++|...|++..+... -+...|..+-.++...|++++|...|++..+.. +-+...+..+..+|...
T Consensus        21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           21 MEEGLSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            3344556666666666666666665422 255666666666666677777777766666541 22445566666666667


Q ss_pred             CCHhHHHHHHHHHHHC
Q 014860          374 GRAGEAMKLLKELQNK  389 (417)
Q Consensus       374 g~~~~A~~~~~~m~~~  389 (417)
                      |++++|...+++..+.
T Consensus        99 g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           99 HNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHC-
T ss_pred             CCHHHHHHHHHHHHHh
Confidence            7777777766666554

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=97.84  E-value=0.012  Score=56.26  Aligned_cols=46  Identities=4%  Similarity=-0.151  Sum_probs=35.4

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860          236 ETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       236 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      +.+..+|+++.... +.+...|-..+.-+.+.|+.+.|..++++...
T Consensus       196 ~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~  241 (493)
T 2uy1_A          196 SRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIE  241 (493)
T ss_dssp             HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44667777777643 44577788888888889999999999998776

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.78  E-value=0.00059  Score=51.76  Aligned_cols=99  Identities=6%  Similarity=-0.129  Sum_probs=78.4

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-HHHHHHHHH
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQP-RFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-EALYNTIIY  181 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~~li~  181 (417)
                      +-.+...+...|++++|+..|+.+.+.. +.......+..+..++...|++++|...++...+..+..+. ...+..+..
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~   84 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence            3345566778999999999999987643 11112267788888999999999999999999887542111 677888999


Q ss_pred             HHHHhCCHHHHHHHHHHhHhC
Q 014860          182 FFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       182 ~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      +|.+.|++++|...|+.+.+.
T Consensus        85 ~~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHH
Confidence            999999999999999999886

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.73  E-value=0.0014  Score=49.63  Aligned_cols=93  Identities=11%  Similarity=-0.006  Sum_probs=51.2

Q ss_pred             HHHHHccCChhHHHHHHHHHHcCCCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC---HHHHHHHHH
Q 014860          144 TRKLGAAKMYQEMDDVVNQMLATPSFCG-TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS---IRSYNILFT  219 (417)
Q Consensus       144 i~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~---~~~~~~li~  219 (417)
                      ...+...|++++|.+.++.+.+.....+ ....+..+..+|.+.|++++|...|+...+..    +.+   ...+..+..
T Consensus         9 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~----p~~~~~~~~~~~la~   84 (129)
T 2xev_A            9 AFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY----PTHDKAAGGLLKLGL   84 (129)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTSTTHHHHHHHHHH
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC----CCCcccHHHHHHHHH
Confidence            3445556666666666666655432101 01355555566666666666666666665531    112   444555666


Q ss_pred             HHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          220 AFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       220 ~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      ++...|+        .++|...|++..+.
T Consensus        85 ~~~~~g~--------~~~A~~~~~~~~~~  105 (129)
T 2xev_A           85 SQYGEGK--------NTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             HHHHcCC--------HHHHHHHHHHHHHH
Confidence            6666666        66666666666554

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.73  E-value=0.00065  Score=64.55  Aligned_cols=133  Identities=11%  Similarity=0.000  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 014860          254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPN-------------SFSYDYLIHGLCAQGRTKNARELCDEMKRKG  320 (417)
Q Consensus       254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g  320 (417)
                      ...+..+-..|.+.|++++|...|++..+...-.++             ...|..+..+|.+.|++++|+..+++..+..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            456777888899999999999999988763211111             5789999999999999999999999998864


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHhHHHH-HHHHHHHC
Q 014860          321 FVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPV-DFITYRTVLDEICRRGRAGEAMK-LLKELQNK  389 (417)
Q Consensus       321 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~A~~-~~~~m~~~  389 (417)
                      . -+...|..+-.+|...|++++|...|++..+.  .| +...+..+..++.+.|+.+++.+ ++..|...
T Consensus       348 p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~k  415 (457)
T 1kt0_A          348 S-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV--NPQNKAARLQISMCQKKAKEHNERDRRIYANMFKK  415 (457)
T ss_dssp             T-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--C----CHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             C-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            3 36889999999999999999999999999875  34 44577888888888888887764 56666543

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.71  E-value=0.00066  Score=54.13  Aligned_cols=64  Identities=14%  Similarity=0.097  Sum_probs=42.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      ..|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|...|++.....
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            456666666777777777777777666642 3345566666667777777777777777666654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.71  E-value=0.00013  Score=69.83  Aligned_cols=118  Identities=11%  Similarity=0.009  Sum_probs=74.2

Q ss_pred             HHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcC
Q 014860          146 KLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRG  225 (417)
Q Consensus       146 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g  225 (417)
                      .+.+.|++++|.+.+++..+...  .+...|..+..+|.+.|++++|++.|++..+.    -+.+..+|..+..+|...|
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l----~p~~~~~~~~lg~~~~~~g   88 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL----DKKYIKGYYRRAASNMALG   88 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS----CTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHcC
Confidence            34456777777777777766543  45677777777777777777777777777764    1335667777777777777


Q ss_pred             CccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 014860          226 KNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG--YILSNHVNDALRIFH  278 (417)
Q Consensus       226 ~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~  278 (417)
                      +        +++|++.|++..+.. +-+...+..+-.+  +.+.|++++|.+.++
T Consensus        89 ~--------~~eA~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           89 K--------FRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             C--------HHHHHHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             C--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            7        777777777776643 1123334444333  666777777777776

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.68  E-value=0.00012  Score=55.10  Aligned_cols=86  Identities=9%  Similarity=-0.020  Sum_probs=44.0

Q ss_pred             cCChhHHHHHHHHHHcCCCC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCcc
Q 014860          150 AKMYQEMDDVVNQMLATPSF-CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNT  228 (417)
Q Consensus       150 ~~~~~~a~~~~~~m~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~  228 (417)
                      .|++++|...+++..+.+.. +.+...+..+..+|.+.|++++|+..|++..+.    .+-+...+..+..++...|+  
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~p~~~~~~~~l~~~~~~~g~--   76 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQ----FPNHQALRVFYAMVLYNLGR--   76 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC--
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh----CCCchHHHHHHHHHHHHcCC--
Confidence            45555666666666554310 023445555555566666666666666665553    12234555555555566665  


Q ss_pred             chhhhhHHHHHHHHHHHHH
Q 014860          229 YINHVYMETIRCLFKQMVN  247 (417)
Q Consensus       229 ~~~~~~~~~a~~~~~~m~~  247 (417)
                            +++|++.|++..+
T Consensus        77 ------~~~A~~~~~~al~   89 (117)
T 3k9i_A           77 ------YEQGVELLLKIIA   89 (117)
T ss_dssp             ------HHHHHHHHHHHHH
T ss_pred             ------HHHHHHHHHHHHH
Confidence                  5666665555544

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=97.64  E-value=0.00029  Score=67.37  Aligned_cols=121  Identities=10%  Similarity=-0.057  Sum_probs=94.1

Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN  258 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  258 (417)
                      +...+.+.|++++|++.|++..+.    .+.+..+|..+..++.+.|+        +++|++.+++..+.. +-+..++.
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~----~p~~~~~~~~lg~~~~~~g~--------~~~A~~~~~~al~l~-p~~~~~~~   78 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELD-KKYIKGYY   78 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHSC-TTCHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHhC-CCCHHHHH
Confidence            344566789999999999999885    24458899999999999999        999999999999875 44678899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 014860          259 SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHG--LCAQGRTKNARELCD  314 (417)
Q Consensus       259 ~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~--~~~~g~~~~A~~l~~  314 (417)
                      .+-.+|...|++++|.+.|++..+...-.+.  .+..+..+  +.+.|++++|.+.++
T Consensus        79 ~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~--~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           79 RRAASNMALGKFRAALRDYETVVKVKPHDKD--AKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHSTTCTT--HHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHHHhcccc
Confidence            9999999999999999999998774322233  44444444  888899999999988

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.62  E-value=0.00096  Score=63.38  Aligned_cols=125  Identities=9%  Similarity=-0.043  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-------------HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCC
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-------------EALYNTIIYFFAEARKLSRAVYVFKYMKNSR  203 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  203 (417)
                      ...|..+...+.+.|++++|...|++..+.....++             ...|..+..+|.+.|++++|+..|++..+. 
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-  346 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-  346 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence            445666667777788888888888877765432111             466667777777777777777777776664 


Q ss_pred             CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860          204 NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDAL  274 (417)
Q Consensus       204 ~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  274 (417)
                         .+.+...|..+-.+|...|+        +++|...|++..+.. +-+...+..+..++.+.++.+++.
T Consensus       347 ---~p~~~~a~~~~g~a~~~~g~--------~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          347 ---DSANEKGLYRRGEAQLLMNE--------FESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             ---STTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCccHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence               13356667777777777777        777777777766543 223455666666666666665554

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.61  E-value=0.00077  Score=62.09  Aligned_cols=121  Identities=7%  Similarity=-0.131  Sum_probs=64.0

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHcCC--------------CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCC
Q 014860          140 YHIMTRKLGAAKMYQEMDDVVNQMLATP--------------SFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNL  205 (417)
Q Consensus       140 ~~~li~~~~~~~~~~~a~~~~~~m~~~~--------------~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  205 (417)
                      +..+...+.+.|++++|.+.+++..+.-              ..+.+..+|..+..+|.+.|++++|+..+++..+.   
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~---  302 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI---  302 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh---
Confidence            4455556666777777777666665510              00023445555556666666666666666666553   


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860          206 ECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDA  273 (417)
Q Consensus       206 g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a  273 (417)
                       -+.+...|..+..+|...|+        +++|++.|++..+.. +-+...+..+-..+.+.++.+++
T Consensus       303 -~p~~~~a~~~lg~~~~~~g~--------~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          303 -DPSNTKALYRRAQGWQGLKE--------YDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             -CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CchhHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence             12245555556666666666        666666666555442 12344444444444444444433

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.59  E-value=0.00036  Score=66.58  Aligned_cols=129  Identities=8%  Similarity=-0.056  Sum_probs=97.2

Q ss_pred             HhccCChhHHHHHHHHhhcC--CCCC----CCHHHHHHHHHHHHccCChhHHHHHHHHHHcC-----CCCCCC-HHHHHH
Q 014860          111 MTLQEDPLVCLELFNWASKQ--PRFR----HDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT-----PSFCGT-EALYNT  178 (417)
Q Consensus       111 l~~~~~~~~A~~~~~~~~~~--~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~~~~~-~~~~~~  178 (417)
                      +..+|++++|+.+++...+.  .-+.    ....+++.+..+|...|++++|..++++.++.     |...|+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            55789999999999887542  1111    24577889999999999999999999888763     333233 567999


Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCC----CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSR----NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN  247 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~----~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~  247 (417)
                      |...|...|++++|+.+|++..+..    +...+....+.+.+-.++...+.        +++|+.+|..+++
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~--------~~~ae~~~~~~~~  463 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM--------FRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHH
Confidence            9999999999999999999876541    11222234456677777888888        9999999999875

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.53  E-value=0.00084  Score=61.81  Aligned_cols=117  Identities=7%  Similarity=-0.095  Sum_probs=95.0

Q ss_pred             HHHHHHHHhccCChhHHHHHHHHhhcCC--------------CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC
Q 014860          104 NEELCNVMTLQEDPLVCLELFNWASKQP--------------RFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF  169 (417)
Q Consensus       104 ~~~ll~~l~~~~~~~~A~~~~~~~~~~~--------------~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  169 (417)
                      +..+...+.+.+++++|++.|+.+.+..              .-+.+...|..+..++.+.|++++|.+.++...+... 
T Consensus       226 ~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-  304 (370)
T 1ihg_A          226 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-  304 (370)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-
Confidence            5566777789999999999999887510              0123567888888999999999999999999998764 


Q ss_pred             CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860          170 CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK  226 (417)
Q Consensus       170 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~  226 (417)
                       .+...+..+..+|.+.|++++|++.|++..+..    +.+...+..+...+...++
T Consensus       305 -~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~----P~~~~~~~~l~~~~~~~~~  356 (370)
T 1ihg_A          305 -SNTKALYRRAQGWQGLKEYDQALADLKKAQEIA----PEDKAIQAELLKVKQKIKA  356 (370)
T ss_dssp             -TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHHHH
Confidence             578899999999999999999999999998751    3356677777777777766

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.52  E-value=0.0017  Score=51.68  Aligned_cols=99  Identities=13%  Similarity=0.064  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHHcC--------CC--------CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860          138 STYHIMTRKLGAAKMYQEMDDVVNQMLAT--------PS--------FCGTEALYNTIIYFFAEARKLSRAVYVFKYMKN  201 (417)
Q Consensus       138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~--------~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  201 (417)
                      ..+......+.+.|++++|...|....+.        ..        .+.+...|..+..+|.+.|++++|+..++...+
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            34444555666666666666666666554        00        002346788888888899999999999888887


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          202 SRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       202 ~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      ..    +.+...|..+..++...|+        +++|...|++..+.
T Consensus        92 ~~----p~~~~a~~~~g~~~~~~g~--------~~~A~~~~~~al~l  126 (162)
T 3rkv_A           92 RE----ETNEKALFRRAKARIAAWK--------LDEAEEDLKLLLRN  126 (162)
T ss_dssp             HS----TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             cC----CcchHHHHHHHHHHHHHhc--------HHHHHHHHHHHHhc
Confidence            51    4457788888888999998        89999988888776

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.45  E-value=0.00092  Score=63.78  Aligned_cols=141  Identities=10%  Similarity=-0.001  Sum_probs=99.7

Q ss_pred             CCCHHHHHHHHH----------HHHccCChhHHHHHHHHHHcC-----CCCCC-CHHHHHHHHHHHHHhCCHHHHHHHHH
Q 014860          134 RHDASTYHIMTR----------KLGAAKMYQEMDDVVNQMLAT-----PSFCG-TEALYNTIIYFFAEARKLSRAVYVFK  197 (417)
Q Consensus       134 ~~~~~~~~~li~----------~~~~~~~~~~a~~~~~~m~~~-----~~~~~-~~~~~~~li~~~~~~g~~~~a~~~~~  197 (417)
                      .++..++..++.          .+...|++++|+.++++..+.     |...| ...+++.|..+|...|++++|..+++
T Consensus       296 ~~s~e~v~~~l~~a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~  375 (490)
T 3n71_A          296 KPSQEVVKEMIQFSKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYAR  375 (490)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            456665554433          355889999999999888763     22112 35689999999999999999999999


Q ss_pred             HhHhCC----CCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-----CCC-CCC-HHHHHHHHHHHHh
Q 014860          198 YMKNSR----NLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-----DGI-EPD-IFSLNSMIKGYIL  266 (417)
Q Consensus       198 ~m~~~~----~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-----~g~-~p~-~~~~~~li~~~~~  266 (417)
                      +..+..    +...+-...+++.|...|...|+        +++|+.++++..+     .|- .|+ ..+.+.+-.++..
T Consensus       376 ~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~--------~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e  447 (490)
T 3n71_A          376 RMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGH--------IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEME  447 (490)
T ss_dssp             HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHH
Confidence            876541    11122235679999999999999        9999988887664     232 232 2344556666677


Q ss_pred             cCCHHHHHHHHHHhhh
Q 014860          267 SNHVNDALRIFHQMGV  282 (417)
Q Consensus       267 ~g~~~~a~~~~~~m~~  282 (417)
                      .+++++|+.++..+++
T Consensus       448 ~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          448 LRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            7788888888888765

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.42  E-value=0.0026  Score=49.27  Aligned_cols=109  Identities=6%  Similarity=-0.110  Sum_probs=56.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 014860          235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNAR  310 (417)
Q Consensus       235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~  310 (417)
                      .++|++.|++..+.| .++..    +-..|...+.+++|.+.|+...+ .   -+...+..|-..|..    .+++++|.
T Consensus        11 ~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~-~---g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           11 LKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACE-L---NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             HHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHc-C---CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            566666666666655 23322    44444444555556666655554 1   344445555555554    45555555


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 014860          311 ELCDEMKRKGFVPSSKSYNSLVSALAL----NGEVEETVKNLWEMIEKQ  355 (417)
Q Consensus       311 ~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  355 (417)
                      ++|++..+.|   +...+..|-..|..    .++.++|.++|++..+.|
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            5555555543   44445555555555    455555555555555543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.36  E-value=0.016  Score=44.65  Aligned_cols=114  Identities=8%  Similarity=-0.069  Sum_probs=95.8

Q ss_pred             cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHH
Q 014860          267 SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALAL----NGEVE  342 (417)
Q Consensus       267 ~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~  342 (417)
                      .++.++|.+.|+...+ .| .+...    |-..|...+..++|.++|++..+.|   +...+..|-..|..    .++.+
T Consensus         8 ~~d~~~A~~~~~~aa~-~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~   78 (138)
T 1klx_A            8 KKDLKKAIQYYVKACE-LN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLR   78 (138)
T ss_dssp             HHHHHHHHHHHHHHHH-TT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHH
T ss_pred             ccCHHHHHHHHHHHHc-CC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHH
Confidence            3467899999999887 45 24433    6666777788999999999999876   77888889999988    89999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCCC
Q 014860          343 ETVKNLWEMIEKQRPVDFITYRTVLDEICR----RGRAGEAMKLLKELQNKNLI  392 (417)
Q Consensus       343 ~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~p  392 (417)
                      +|.++|++..+.|   +...+..|-..|..    .++.++|.+.|++-.+.|.+
T Consensus        79 ~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A           79 KAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence            9999999999886   67788888888988    89999999999999998853

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.34  E-value=0.00025  Score=52.15  Aligned_cols=91  Identities=12%  Similarity=-0.023  Sum_probs=54.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-------HH
Q 014860          289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVD-------FI  361 (417)
Q Consensus       289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-------~~  361 (417)
                      +...|..+...+...|++++|.+.|++..+.. +.+...|..+..+|...|++++|.+.+++..+.  .|+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY--TSTAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CSSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCccHHHHHHH
Confidence            34456666666777777777777777766542 225666667777777777777777777776654  333       33


Q ss_pred             HHHHHHHHHHHcCCHhHHHHH
Q 014860          362 TYRTVLDEICRRGRAGEAMKL  382 (417)
Q Consensus       362 ~~~~li~~~~~~g~~~~A~~~  382 (417)
                      .+..+..++...|+.++|.+.
T Consensus        80 ~~~~~~~~~~~~~~~~~a~~~  100 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPVVE  100 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCSSS
T ss_pred             HHHHHHHHHHHHHhHhhhHhH
Confidence            444444555555555544443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.32  E-value=0.0027  Score=47.08  Aligned_cols=78  Identities=12%  Similarity=0.108  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          309 ARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       309 A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      |...|++..+.. +.+...+..+...|...|++++|...|++..+.. +.+...|..+..+|...|++++|...|++...
T Consensus         4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            344444444332 1234455555555555555555555555555431 22344555555555555555555555555544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.30  E-value=0.00086  Score=60.93  Aligned_cols=148  Identities=10%  Similarity=-0.036  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC
Q 014860          173 EALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP  252 (417)
Q Consensus       173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p  252 (417)
                      ...+..+...+.+.|++++|+..|++....     .|+...       +...++        .+++...+.         
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-----~p~~~~-------~~~~~~--------~~~~~~~l~---------  229 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY-----MGDDFM-------FQLYGK--------YQDMALAVK---------  229 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH-----SCHHHH-------HTCCHH--------HHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH-----hccchh-------hhhccc--------HHHHHHHHH---------
Confidence            345667777888889999999999998764     344331       122222        333332221         


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 014860          253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP-SSKSYNSL  331 (417)
Q Consensus       253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~l  331 (417)
                       ...|..+-.+|.+.|++++|...++...+..  +.+...|..+..+|...|++++|...|++..+.  .| +...+..+
T Consensus       230 -~~~~~nla~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L  304 (338)
T 2if4_A          230 -NPCHLNIAACLIKLKRYDEAIGHCNIVLTEE--EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRREL  304 (338)
T ss_dssp             -THHHHHHHHHHHTTTCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHH
Confidence             1256666667777777777777777665521  235666777777777777777777777776543  23 23334444


Q ss_pred             HHH-HHhcCCHHHHHHHHHHHHHc
Q 014860          332 VSA-LALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       332 i~~-~~~~g~~~~A~~~~~~m~~~  354 (417)
                      ... ....+..+++..+|..|...
T Consensus       305 ~~l~~~~~~~~~~a~~~~~~~l~~  328 (338)
T 2if4_A          305 RALAEQEKALYQKQKEMYKGIFKG  328 (338)
T ss_dssp             ------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhCC
Confidence            333 22345566666777766654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.28  E-value=0.0024  Score=47.40  Aligned_cols=80  Identities=5%  Similarity=-0.063  Sum_probs=68.4

Q ss_pred             HHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Q 014860          119 VCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKY  198 (417)
Q Consensus       119 ~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~  198 (417)
                      .|++.|+.+.+..  +.+...+..+...+...|++++|...++...+...  .+...|..+..+|.+.|++++|...|++
T Consensus         3 ~a~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~g~~~~A~~~~~~   78 (115)
T 2kat_A            3 AITERLEAMLAQG--TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP--TYSVAWKWLGKTLQGQGDRAGARQAWES   78 (115)
T ss_dssp             CHHHHHHHHHTTT--CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            5677788776544  56788999999999999999999999999988764  5678899999999999999999999998


Q ss_pred             hHhC
Q 014860          199 MKNS  202 (417)
Q Consensus       199 m~~~  202 (417)
                      ..+.
T Consensus        79 al~~   82 (115)
T 2kat_A           79 GLAA   82 (115)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            8764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.26  E-value=0.0026  Score=46.00  Aligned_cols=63  Identities=14%  Similarity=0.093  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          325 SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      ...+..+..+|...|++++|...|++..+.. +-+...|..+..+|...|++++|.+.|++..+
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3444445555555555555555555554431 11233444455555555555555555555443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.24  E-value=0.0011  Score=60.33  Aligned_cols=146  Identities=10%  Similarity=0.017  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHH
Q 014860          138 STYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNIL  217 (417)
Q Consensus       138 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~l  217 (417)
                      ..+..+...+.+.|++++|...|....+..   |+...       +...|+.+++...   +.          ...|..+
T Consensus       180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~---l~----------~~~~~nl  236 (338)
T 2if4_A          180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALA---VK----------NPCHLNI  236 (338)
T ss_dssp             HHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHH---HH----------THHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHH---HH----------HHHHHHH
Confidence            344555566667788888888877776643   22221       1111222222111   11          1245555


Q ss_pred             HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC-CHHHHHHH
Q 014860          218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP-NSFSYDYL  296 (417)
Q Consensus       218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-~~~~~~~l  296 (417)
                      ..+|.+.|+        +++|+..+++..+.. +-+...|..+-.+|...|++++|.+.|+...+.   .| +...+..+
T Consensus       237 a~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l---~p~~~~a~~~L  304 (338)
T 2if4_A          237 AACLIKLKR--------YDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY---APDDKAIRREL  304 (338)
T ss_dssp             HHHHHTTTC--------CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred             HHHHHHcCC--------HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHH
Confidence            555556665        566666665555442 224455555555666666666666666555431   12 22233333


Q ss_pred             HHH-HHhcCCHHHHHHHHHHHHH
Q 014860          297 IHG-LCAQGRTKNARELCDEMKR  318 (417)
Q Consensus       297 i~~-~~~~g~~~~A~~l~~~m~~  318 (417)
                      ... ....+..+++..+|..|..
T Consensus       305 ~~l~~~~~~~~~~a~~~~~~~l~  327 (338)
T 2if4_A          305 RALAEQEKALYQKQKEMYKGIFK  327 (338)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhC
Confidence            332 1223445555556655554

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.19  E-value=0.043  Score=53.44  Aligned_cols=171  Identities=9%  Similarity=-0.031  Sum_probs=115.4

Q ss_pred             ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC----------HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHH
Q 014860          152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK----------LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAF  221 (417)
Q Consensus       152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~  221 (417)
                      .-++|.+.++.+....+  .+..+|+.--.++.+.|+          ++++++.++.+.+.    -+-+..+|+.---.+
T Consensus        44 ~~eeal~~~~~~l~~nP--~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~----~pK~y~aW~hR~w~l  117 (567)
T 1dce_A           44 LDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYGTWHHRCWLL  117 (567)
T ss_dssp             CSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCc--hhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh----CCCCHHHHHHHHHHH
Confidence            34566777777776654  455666666566666665          77888888887775    234567777777777


Q ss_pred             HhcC--CccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHhhhhCCCCCCHHHHHHHHH
Q 014860          222 LSRG--KNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSN-HVNDALRIFHQMGVVYNYLPNSFSYDYLIH  298 (417)
Q Consensus       222 ~~~g--~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  298 (417)
                      .+.+  +        ++++++.++++.+.. +-+-.+|+---..+.+.| .++++.+.++++.+ . -.-|...|+....
T Consensus       118 ~~l~~~~--------~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~-~-~p~n~saW~~r~~  186 (567)
T 1dce_A          118 SRLPEPN--------WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLIT-R-NFSNYSSWHYRSC  186 (567)
T ss_dssp             HTCSSCC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTT-T-TCCCHHHHHHHHH
T ss_pred             HHccccc--------HHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHH-H-CCCCccHHHHHHH
Confidence            7777  5        688888888887765 346677777666666777 77778777777765 2 2346667776666


Q ss_pred             HHHhc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860          299 GLCAQ--------------GRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE  340 (417)
Q Consensus       299 ~~~~~--------------g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~  340 (417)
                      .+.+.              +.++++.+.+.+....... |...|+-+-..+.+.++
T Consensus       187 ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~  241 (567)
T 1dce_A          187 LLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEP  241 (567)
T ss_dssp             HHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCC
T ss_pred             HHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCC
Confidence            65553              4568888888887765332 67778777777766665

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.17  E-value=0.008  Score=47.45  Aligned_cols=95  Identities=9%  Similarity=-0.134  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC--------H-----HHHHHHHHHHHhcCCccchhhhhHHHHHH
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS--------I-----RSYNILFTAFLSRGKNTYINHVYMETIRC  240 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~--------~-----~~~~~li~~~~~~g~~~~~~~~~~~~a~~  240 (417)
                      ..+......+.+.|++++|+..|++..+.     .|+        .     ..|+.+-.++.+.|+        +++|+.
T Consensus        12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l-----~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr--------~~eAl~   78 (159)
T 2hr2_A           12 YLALSDAQRQLVAGEYDEAAANCRRAMEI-----SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRS--------FDEALH   78 (159)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTC--------HHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhh-----CCCCcchhhhhhccchHHHHHHHHHHHHHCCC--------HHHHHH
Confidence            44556677788999999999999998875     333        2     389999999999999        999999


Q ss_pred             HHHHHHHC-----CCCCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHhh
Q 014860          241 LFKQMVND-----GIEPD-IFSL----NSMIKGYILSNHVNDALRIFHQMG  281 (417)
Q Consensus       241 ~~~~m~~~-----g~~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~  281 (417)
                      .+++..+.     .+.|+ ...|    ...-.++...|++++|+..|+...
T Consensus        79 ~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl  129 (159)
T 2hr2_A           79 SADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV  129 (159)
T ss_dssp             HHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence            99888764     11333 3455    556666666777777776666653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.14  E-value=0.0075  Score=47.64  Aligned_cols=113  Identities=13%  Similarity=0.022  Sum_probs=81.1

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHcCCCCCC-----CH-----HHHHHHHHHHHHhCCHHHHHHHHHHhHhC--CCCCC
Q 014860          140 YHIMTRKLGAAKMYQEMDDVVNQMLATPSFCG-----TE-----ALYNTIIYFFAEARKLSRAVYVFKYMKNS--RNLEC  207 (417)
Q Consensus       140 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~g~  207 (417)
                      +......+...|++++|.+.|+..++..+..|     +.     ..|+.+..++.+.|++++|+..|++..+.  +...+
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            34455566778888888888888877653211     23     38999999999999999999999988863  00011


Q ss_pred             CCC-HHHH----HHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-----CCCCCCHHHHHHH
Q 014860          208 RPS-IRSY----NILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-----DGIEPDIFSLNSM  260 (417)
Q Consensus       208 ~p~-~~~~----~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~l  260 (417)
                      .|+ ...|    ...-.++...|+        +++|+..|++..+     .|+.+........
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr--------~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~  148 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGR--------GAEAMPEFKKVVEMIEERKGETPGKERMMEV  148 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHCCSCCTTHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCC--------HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            454 5678    899999999999        9999999998875     4555554444333

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.12  E-value=0.0092  Score=41.59  Aligned_cols=61  Identities=16%  Similarity=0.212  Sum_probs=27.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      .+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...+++..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            33444444444444444444444444321 11334444444444444555555544444444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.10  E-value=0.0061  Score=42.56  Aligned_cols=83  Identities=8%  Similarity=0.025  Sum_probs=62.8

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYN  215 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~  215 (417)
                      +...+..+...+...|++++|...++...+...  .+...+..+...|.+.|++++|...|++..+..    +.+...+.
T Consensus         8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~----p~~~~~~~   81 (91)
T 1na3_A            8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP--NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD----PNNAEAKQ   81 (91)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHH
T ss_pred             cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----CCCHHHHH
Confidence            356677777788888999999999988887654  567788888889999999999999999888751    33566666


Q ss_pred             HHHHHHHhc
Q 014860          216 ILFTAFLSR  224 (417)
Q Consensus       216 ~li~~~~~~  224 (417)
                      .+-..+...
T Consensus        82 ~l~~~~~~~   90 (91)
T 1na3_A           82 NLGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            666555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.08  E-value=0.051  Score=52.91  Aligned_cols=167  Identities=10%  Similarity=-0.043  Sum_probs=130.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcC
Q 014860          235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH----------VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQG  304 (417)
Q Consensus       235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g  304 (417)
                      .++|++.++++.+.. +-+..+|+.--.++...|+          ++++.+.++.+.+.  -+-+...|+.---.+.+.|
T Consensus        45 ~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           45 DESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCS
T ss_pred             CHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcc
Confidence            678899999998865 3345667665555555666          89999999999863  2467888988888888999


Q ss_pred             --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------
Q 014860          305 --RTKNARELCDEMKRKGFVPSSKSYNSLVSALALNG-EVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR--------  373 (417)
Q Consensus       305 --~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------  373 (417)
                        +++++.+.++++.+...+ |..+|+.--..+.+.| ..+++++.++++.+.. .-|...|+.....+.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccccc
Confidence              779999999999987655 8889988888888889 8999999999998763 45777888777776663        


Q ss_pred             ------CCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHh
Q 014860          374 ------GRAGEAMKLLKELQNKNLIDGYTYTKLLDVLED  406 (417)
Q Consensus       374 ------g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~  406 (417)
                            +.++++++.+++......-+...|.-+--.+.+
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~  238 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGR  238 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSC
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhc
Confidence                  557899999999888765477777765554443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.08  E-value=0.0054  Score=44.72  Aligned_cols=65  Identities=9%  Similarity=0.073  Sum_probs=50.6

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      +...+..+...+...|++++|.+.++...+...  .+...+..+..+|.+.|++++|++.|++..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQP--QNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            455667777778888888888888888877654  46777888888888888888888888888764

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=96.97  E-value=0.0048  Score=44.57  Aligned_cols=64  Identities=14%  Similarity=0.118  Sum_probs=44.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      +...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4566667777777777777777777777665322 455677777777777777777777776654

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.95  E-value=0.014  Score=59.42  Aligned_cols=30  Identities=7%  Similarity=0.003  Sum_probs=16.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860          253 DIFSLNSMIKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      +...|..+-..+.+.|+++.|++.|..+..
T Consensus       680 ~~~~W~~la~~al~~~~~~~A~~~y~~~~d  709 (814)
T 3mkq_A          680 AEMKWRALGDASLQRFNFKLAIEAFTNAHD  709 (814)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred             cHhHHHHHHHHHHHcCCHHHHHHHHHHccC
Confidence            344555555555555555555555555543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.91  E-value=0.0022  Score=50.60  Aligned_cols=99  Identities=12%  Similarity=-0.041  Sum_probs=80.4

Q ss_pred             ccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCh----------hHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 014860          113 LQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMY----------QEMDDVVNQMLATPSFCGTEALYNTIIYF  182 (417)
Q Consensus       113 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~----------~~a~~~~~~m~~~~~~~~~~~~~~~li~~  182 (417)
                      +.+.+++|++.++...+..  +.+...|..+..++...+++          ++|+..|++.++..+  .+...|..+..+
T Consensus        14 r~~~feeA~~~~~~Ai~l~--P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP--~~~~A~~~LG~a   89 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGNA   89 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc--CcHHHHHHHHHH
Confidence            4456889999999887655  56889999888888887765          599999999999875  578899999999


Q ss_pred             HHHhC-----------CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHH
Q 014860          183 FAEAR-----------KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTA  220 (417)
Q Consensus       183 ~~~~g-----------~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~  220 (417)
                      |...|           ++++|++.|++..+.     .|+...|...+..
T Consensus        90 y~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l-----~P~~~~y~~al~~  133 (158)
T 1zu2_A           90 YTSFAFLTPDETEAKHNFDLATQFFQQAVDE-----QPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHH
T ss_pred             HHHhcccCcchhhhhccHHHHHHHHHHHHHh-----CCCCHHHHHHHHH
Confidence            99875           899999999999986     7776666554443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.77  E-value=0.039  Score=56.09  Aligned_cols=154  Identities=13%  Similarity=0.121  Sum_probs=92.3

Q ss_pred             HhccCChhHHHH-HHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH
Q 014860          111 MTLQEDPLVCLE-LFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL  189 (417)
Q Consensus       111 l~~~~~~~~A~~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~  189 (417)
                      ....++++.|.+ ++..+       ++......++..+.+.|..++|.++.+.        +.     .-.......|++
T Consensus       609 ~~~~~~~~~a~~~~l~~i-------~~~~~~~~~~~~l~~~~~~~~a~~~~~~--------~~-----~~f~~~l~~~~~  668 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNV-------EGKDSLTKIARFLEGQEYYEEALNISPD--------QD-----QKFELALKVGQL  668 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGC-------CCHHHHHHHHHHHHHTTCHHHHHHHCCC--------HH-----HHHHHHHHHTCH
T ss_pred             HHHhCCHHHHHHHHHhcC-------CchHHHHHHHHHHHhCCChHHheecCCC--------cc-----hheehhhhcCCH
Confidence            345778888877 44221       2133347777778888888888766521        11     113345678888


Q ss_pred             HHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860          190 SRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNH  269 (417)
Q Consensus       190 ~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  269 (417)
                      +.|.++.+.+.         +...|..+...+.+.++        ++.|++.|..+.+         |..+...|...|+
T Consensus       669 ~~A~~~~~~~~---------~~~~W~~la~~al~~~~--------~~~A~~~y~~~~d---------~~~l~~l~~~~~~  722 (814)
T 3mkq_A          669 TLARDLLTDES---------AEMKWRALGDASLQRFN--------FKLAIEAFTNAHD---------LESLFLLHSSFNN  722 (814)
T ss_dssp             HHHHHHHTTCC---------CHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTC---------HHHHHHHHHHTTC
T ss_pred             HHHHHHHHhhC---------cHhHHHHHHHHHHHcCC--------HHHHHHHHHHccC---------hhhhHHHHHHcCC
Confidence            88888765442         56788888888888888        8888888887653         3344455555666


Q ss_pred             HHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860          270 VNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMK  317 (417)
Q Consensus       270 ~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~  317 (417)
                      .+...++.+.... .|      -++....+|.+.|++++|.+++.++.
T Consensus       723 ~~~~~~~~~~a~~-~~------~~~~A~~~~~~~g~~~~a~~~~~~~~  763 (814)
T 3mkq_A          723 KEGLVTLAKDAET-TG------KFNLAFNAYWIAGDIQGAKDLLIKSQ  763 (814)
T ss_dssp             HHHHHHHHHHHHH-TT------CHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHH-cC------chHHHHHHHHHcCCHHHHHHHHHHcC
Confidence            5555554444433 11      12333334455555555555555443

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.60  E-value=0.076  Score=48.04  Aligned_cols=140  Identities=9%  Similarity=0.006  Sum_probs=95.7

Q ss_pred             CCHHHHHHHHh--cc---CChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH---ccC-----ChhHHHHHHHHHHcCCC
Q 014860          102 FNNEELCNVMT--LQ---EDPLVCLELFNWASKQPRFRHDASTYHIMTRKLG---AAK-----MYQEMDDVVNQMLATPS  168 (417)
Q Consensus       102 ~~~~~ll~~l~--~~---~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~---~~~-----~~~~a~~~~~~m~~~~~  168 (417)
                      -.|...+++..  ..   .+..+|+.+|+.+.+..  +-....|..+.-++.   ..+     ........+........
T Consensus       195 ~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD--P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~  272 (372)
T 3ly7_A          195 ALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS--PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE  272 (372)
T ss_dssp             GGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGG
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhccc
Confidence            36777776653  22   33578999999997654  334455554433332   111     11111122222222233


Q ss_pred             CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          169 FCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       169 ~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      .+.+..+|..+...+...|++++|...++++...     .|+...|..+-..+.-.|+        .++|.+.|++....
T Consensus       273 ~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~L-----n~s~~a~~llG~~~~~~G~--------~~eA~e~~~~AlrL  339 (372)
T 3ly7_A          273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDL-----EMSWLNYVLLGKVYEMKGM--------NREAADAYLTAFNL  339 (372)
T ss_dssp             GTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc-----CCCHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhc
Confidence            3378889998888888889999999999999986     4788888888888999999        99999999998876


Q ss_pred             CCCCCHHHHH
Q 014860          249 GIEPDIFSLN  258 (417)
Q Consensus       249 g~~p~~~~~~  258 (417)
                        .|...||.
T Consensus       340 --~P~~~t~~  347 (372)
T 3ly7_A          340 --RPGANTLY  347 (372)
T ss_dssp             --SCSHHHHH
T ss_pred             --CCCcChHH
Confidence              47776664

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.55  E-value=0.017  Score=54.11  Aligned_cols=87  Identities=11%  Similarity=0.042  Sum_probs=67.5

Q ss_pred             hcCCHHHHHHHHHHHHHC---CCCC---C-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCH-HHHHHHH
Q 014860          302 AQGRTKNARELCDEMKRK---GFVP---S-SKSYNSLVSALALNGEVEETVKNLWEMIEK-----Q-RPVDF-ITYRTVL  367 (417)
Q Consensus       302 ~~g~~~~A~~l~~~m~~~---g~~p---~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~-~~~~~li  367 (417)
                      ..|++++|+.++++..+.   -+.|   + ..+++.|..+|...|++++|+.++++..+-     | -.|++ .+|+.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457889999999886642   1222   2 467899999999999999999999987653     2 23444 4788899


Q ss_pred             HHHHHcCCHhHHHHHHHHHHH
Q 014860          368 DEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       368 ~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      ..|...|++++|+.++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999988755

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.51  E-value=0.017  Score=54.13  Aligned_cols=93  Identities=17%  Similarity=0.069  Sum_probs=72.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCC---CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCCH-H
Q 014860          296 LIHGLCAQGRTKNARELCDEMKRKG---FVPS----SKSYNSLVSALALNGEVEETVKNLWEMIEK-----Q-RPVDF-I  361 (417)
Q Consensus       296 li~~~~~~g~~~~A~~l~~~m~~~g---~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p~~-~  361 (417)
                      .+..+.+.|++++|+.++++..+..   ..|+    ..+++.|...|...|++++|+.++++..+-     | ..|+. .
T Consensus       293 ~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~  372 (429)
T 3qwp_A          293 KIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGV  372 (429)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHH
Confidence            3555778899999999999887541   2222    467899999999999999999999987753     2 23333 4


Q ss_pred             HHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          362 TYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       362 ~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      +++.|...|...|++++|+.++++..+
T Consensus       373 ~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          373 QVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            788899999999999999999988754

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=96.50  E-value=0.0093  Score=46.99  Aligned_cols=99  Identities=11%  Similarity=0.098  Sum_probs=80.2

Q ss_pred             HccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCH----------HHHHHHHHHhHhCCCCCCCC-CHHHHHH
Q 014860          148 GAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKL----------SRAVYVFKYMKNSRNLECRP-SIRSYNI  216 (417)
Q Consensus       148 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~~~~g~~p-~~~~~~~  216 (417)
                      .+.+.+++|.+.++...+..+  .+...|..+..++.+.+++          ++|+..|++..+.     .| +..+|..
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P--~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l-----dP~~~~A~~~   85 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNP--LDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI-----DPKKDEAVWC   85 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh-----CcCcHHHHHH
Confidence            456778999999999988775  6888999888899888765          5999999999986     44 5788999


Q ss_pred             HHHHHHhcC-----------CccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860          217 LFTAFLSRG-----------KNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKG  263 (417)
Q Consensus       217 li~~~~~~g-----------~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~  263 (417)
                      +-.+|...|           +        +++|++.|++..+.  .|+...|..-+..
T Consensus        86 LG~ay~~lg~l~P~~~~a~g~--------~~eA~~~~~kAl~l--~P~~~~y~~al~~  133 (158)
T 1zu2_A           86 IGNAYTSFAFLTPDETEAKHN--------FDLATQFFQQAVDE--QPDNTHYLKSLEM  133 (158)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHH--------HHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred             HHHHHHHhcccCcchhhhhcc--------HHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            999998774           6        99999999999886  5776666555543

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.43  E-value=0.26  Score=39.38  Aligned_cols=127  Identities=13%  Similarity=0.135  Sum_probs=71.7

Q ss_pred             HHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCC
Q 014860          147 LGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGK  226 (417)
Q Consensus       147 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~  226 (417)
                      ....|+++.|.++.+.+       .+...|..|.....+.|+++-|.+.|.....            +..+.-.|.-.|+
T Consensus        15 AL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D------------~~~L~~Ly~~tg~   75 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS------------FDKLSFLYLVTGD   75 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC------------HHHHHHHHHHHTC
T ss_pred             HHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC------------HHHHHHHHHHhCC
Confidence            34567777777666554       3456777777777777777777777776654            3444445555666


Q ss_pred             ccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCH
Q 014860          227 NTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRT  306 (417)
Q Consensus       227 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~  306 (417)
                              .++..++-+.....|      -++.-...+.-.|+++++.++|.+..+          |.--+......|..
T Consensus        76 --------~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r----------~~eA~~~A~t~g~~  131 (177)
T 3mkq_B           76 --------VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS----------LPLAYAVAKANGDE  131 (177)
T ss_dssp             --------HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC----------HHHHHHHHHHTTCH
T ss_pred             --------HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC----------hHHHHHHHHHcCcH
Confidence                    555554444444443      244445555566777777777665543          11111122234555


Q ss_pred             HHHHHHHHHH
Q 014860          307 KNARELCDEM  316 (417)
Q Consensus       307 ~~A~~l~~~m  316 (417)
                      +.|.++.+++
T Consensus       132 ~~a~~~~~~~  141 (177)
T 3mkq_B          132 AAASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHh
Confidence            6666666554

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.38  E-value=0.21  Score=37.73  Aligned_cols=135  Identities=13%  Similarity=0.125  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860          235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD  314 (417)
Q Consensus       235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~  314 (417)
                      .++..++..+....   -+..-||-+|--....-+-+-..++++.+.+-+.+.+              +|+......-+-
T Consensus        23 v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~--------------C~NlKrVi~C~~   85 (172)
T 1wy6_A           23 IDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKSVVECGV   85 (172)
T ss_dssp             HHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHHHHHHHH
T ss_pred             HHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHh--------------hhcHHHHHHHHH
Confidence            77777787777753   3455566666556666667777777777765333322              233333322222


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCC
Q 014860          315 EMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLI  392 (417)
Q Consensus       315 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p  392 (417)
                      .+-     .+...++..+..+...|.-|.-.+++.++.. ..+|++...-.+..||.+.|+..+|.+++.+.-+.|++
T Consensus        86 ~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           86 INN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             Hhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            221     1334556666777777777777777777543 34567777777777888888888888888887777763

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.29  E-value=0.088  Score=47.61  Aligned_cols=145  Identities=11%  Similarity=0.048  Sum_probs=79.6

Q ss_pred             CCCHHHHHHHHHHHHh--cCCccchhhhhHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh---cC--CHHHH---HHH
Q 014860          208 RPSIRSYNILFTAFLS--RGKNTYINHVYMETIRCLFKQMVNDGIEPD-IFSLNSMIKGYIL---SN--HVNDA---LRI  276 (417)
Q Consensus       208 ~p~~~~~~~li~~~~~--~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~---~g--~~~~a---~~~  276 (417)
                      +.+...|...+++...  .++     .....+|..+|++..+.  .|+ ...|..+.-+|.-   .+  .-...   .+.
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~-----~~~~~~A~~l~e~Al~l--DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a  263 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGD-----DKSLNRASELLGEIVQS--SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTE  263 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCS-----HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCC-----HHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHH
Confidence            4466777777766543  233     11278999999999986  454 4455544444431   00  00111   111


Q ss_pred             HHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC
Q 014860          277 FHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQR  356 (417)
Q Consensus       277 ~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  356 (417)
                      +...........+..+|.++...+...|++++|...+++....+  |+...|..+-..+.-.|+.++|.+.|++....  
T Consensus       264 ~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--  339 (372)
T 3ly7_A          264 IDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--  339 (372)
T ss_dssp             HHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--
T ss_pred             HHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--
Confidence            11111101223455666666555555677777777777666653  56666666666666677777777777666654  


Q ss_pred             CCCHHHH
Q 014860          357 PVDFITY  363 (417)
Q Consensus       357 ~p~~~~~  363 (417)
                      .|...||
T Consensus       340 ~P~~~t~  346 (372)
T 3ly7_A          340 RPGANTL  346 (372)
T ss_dssp             SCSHHHH
T ss_pred             CCCcChH
Confidence            4555554

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.02  E-value=0.06  Score=50.36  Aligned_cols=95  Identities=9%  Similarity=-0.001  Sum_probs=71.0

Q ss_pred             HHHHHHhCCHHHHHHHHHHhHhCCCCCCCC----CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-----CC-
Q 014860          180 IYFFAEARKLSRAVYVFKYMKNSRNLECRP----SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-----DG-  249 (417)
Q Consensus       180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p----~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-----~g-  249 (417)
                      +..+.+.|++++|+.++++..+....-+.|    ...+++.+...|...|+        +++|+.++++..+     .| 
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~--------~~eA~~~~~~~L~i~~~~lg~  365 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL--------LEEALFYGTRTMEPYRIFFPG  365 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHHSCS
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc--------HHHHHHHHHHHHHhHHHHcCC
Confidence            455667899999999999998653212222    35679999999999999        9999999988764     22 


Q ss_pred             CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860          250 IEPD-IFSLNSMIKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       250 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      -.|+ ..+++.|-..|...|++++|+.++++..+
T Consensus       366 ~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          366 SHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            1233 35677888888888888888888877643

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.86  E-value=0.52  Score=37.62  Aligned_cols=130  Identities=14%  Similarity=0.127  Sum_probs=97.2

Q ss_pred             HHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHH
Q 014860          218 FTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLI  297 (417)
Q Consensus       218 i~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li  297 (417)
                      .......|+        ++.|.++.+++      -+...|..|-+.....|+++-|++.|.....          +..+.
T Consensus        12 F~LAL~lg~--------l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~   67 (177)
T 3mkq_B           12 FDLALEYGN--------LDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLS   67 (177)
T ss_dssp             HHHHHHTTC--------HHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHH
T ss_pred             HHHHHhcCC--------HHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHH
Confidence            455677888        99999988776      3688999999999999999999999999976          56677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHh
Q 014860          298 HGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAG  377 (417)
Q Consensus       298 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  377 (417)
                      -.|.-.|+.+...++-+.....|      -++.-..++...|+++++.++|.+...   .|...      -.....|..+
T Consensus        68 ~Ly~~tg~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~  132 (177)
T 3mkq_B           68 FLYLVTGDVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEA  132 (177)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHH
Confidence            77888899888777766666554      256666777888999999999854332   22111      1122367788


Q ss_pred             HHHHHHHHH
Q 014860          378 EAMKLLKEL  386 (417)
Q Consensus       378 ~A~~~~~~m  386 (417)
                      .|.++.+++
T Consensus       133 ~a~~~~~~~  141 (177)
T 3mkq_B          133 AASAFLEQA  141 (177)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHh
Confidence            888888776

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=95.83  E-value=0.044  Score=51.30  Aligned_cols=89  Identities=4%  Similarity=-0.079  Sum_probs=66.3

Q ss_pred             hCCHHHHHHHHHHhHhCCCCCCCC----CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH-----CC-CCCC-H
Q 014860          186 ARKLSRAVYVFKYMKNSRNLECRP----SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN-----DG-IEPD-I  254 (417)
Q Consensus       186 ~g~~~~a~~~~~~m~~~~~~g~~p----~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~-----~g-~~p~-~  254 (417)
                      .|++++|+.++++..+....-+-|    ...+++.+...|...|+        +++|+.++++..+     .| -.|+ .
T Consensus       311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------~~eA~~~~~~aL~i~~~~lG~~Hp~~a  382 (433)
T 3qww_A          311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD--------WEGALKYGQKIIKPYSKHYPVYSLNVA  382 (433)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHSCSSCHHHH
T ss_pred             ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC--------HHHHHHHHHHHHHHHHHHcCCCChHHH
Confidence            478999999998876642111222    25779999999999999        9999999998764     22 1333 3


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860          255 FSLNSMIKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       255 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      .+++.|-..|...|++++|+.++++..+
T Consensus       383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          383 SMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            5678888888888998888888877644

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.73  E-value=0.1  Score=36.85  Aligned_cols=57  Identities=23%  Similarity=0.250  Sum_probs=35.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          297 IHGLCAQGRTKNARELCDEMKRKGFVPSSK-SYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       297 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      ...+...|++++|...+++..+... -+.. .+..+..+|...|++++|.+.|++..+.
T Consensus         7 a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            7 IKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            3445566677777777766665421 1445 6666666666677777777777666654

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.69  E-value=0.044  Score=38.86  Aligned_cols=54  Identities=11%  Similarity=0.044  Sum_probs=24.2

Q ss_pred             HHHhcCCHHHHHHHHHHhhhhCCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          263 GYILSNHVNDALRIFHQMGVVYNYLPNSF-SYDYLIHGLCAQGRTKNARELCDEMKR  318 (417)
Q Consensus       263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~  318 (417)
                      .+.+.|++++|.+.|+...+..  +.+.. .|..+..+|...|++++|.+.|++..+
T Consensus         9 ~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A            9 ELINQGDIENALQALEEFLQTE--PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC--SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3444455555555554444311  12233 444444444455555555555554444

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.60  E-value=0.51  Score=35.65  Aligned_cols=60  Identities=15%  Similarity=0.080  Sum_probs=26.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 014860          260 MIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGF  321 (417)
Q Consensus       260 li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~  321 (417)
                      -++.....|+-++-.+++..+..  +.+|+....-.+..+|.+.|+..+|.+++.+..+.|+
T Consensus        97 ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           97 ALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence            33344444444444444444321  2234444444444445555555555555444444443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.48  E-value=0.11  Score=36.79  Aligned_cols=67  Identities=15%  Similarity=0.053  Sum_probs=53.1

Q ss_pred             CCCHHHHHHHHHHHHccCC---hhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860          134 RHDASTYHIMTRKLGAAKM---YQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       134 ~~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      +.|...+..+..++...++   .++|..++++..+..+  .+......+...+.+.|++++|+..|+.+.+.
T Consensus         3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp--~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEP--YNEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCc--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            4567777777777754443   7889999999888775  57788888888899999999999999998876

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.38  E-value=1.1  Score=38.84  Aligned_cols=117  Identities=11%  Similarity=-0.024  Sum_probs=83.2

Q ss_pred             CHHHHHHHHHH-HHhc--CCccchhhhhHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHH
Q 014860          210 SIRSYNILFTA-FLSR--GKNTYINHVYMETIRCLFKQMVNDGIEPD---IFSLNSMIKGYILS-----NHVNDALRIFH  278 (417)
Q Consensus       210 ~~~~~~~li~~-~~~~--g~~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~  278 (417)
                      ....|..++.+ +...  |+....  .....|..++++..+.  .|+   -..|..+...|.+.     |+.++|.+.|+
T Consensus       153 e~L~W~ai~~ss~a~~~~gg~~Al--~~l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~fe  228 (301)
T 3u64_A          153 GTLYWVGTGYVAAFALTPLGSALP--DTVHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFE  228 (301)
T ss_dssp             HHHHHHHHHHHHHHTTSCTTSCCH--HHHHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCCCChHHH--HhHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHH
Confidence            45567776664 4443  332222  2267888888888776  455   56888888888884     99999999999


Q ss_pred             HhhhhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCC--CCHHHHHHH
Q 014860          279 QMGVVYNYLPNSFSYDYLIHGLCAQ-GRTKNARELCDEMKRKGFV--PSSKSYNSL  331 (417)
Q Consensus       279 ~m~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~l~~~m~~~g~~--p~~~~~~~l  331 (417)
                      +..+. +-.-+..++......+++. |+.+++.+.+++.......  |+....|.+
T Consensus       229 rAL~L-nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~~lan~~  283 (301)
T 3u64_A          229 HLTRY-CSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPHNKLLVIL  283 (301)
T ss_dssp             HHHHH-CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSCHHHHHH
T ss_pred             HHHHh-CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCChhHHHHH
Confidence            98773 2112477788888888885 9999999999999988766  776555544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.20  E-value=0.26  Score=38.29  Aligned_cols=83  Identities=13%  Similarity=0.019  Sum_probs=47.1

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHhHHHH
Q 014860          307 KNARELCDEMKRKGFVPSSKSYNSLVSALALNG---EVEETVKNLWEMIEKQRPV--DFITYRTVLDEICRRGRAGEAMK  381 (417)
Q Consensus       307 ~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~A~~  381 (417)
                      ..+.+-|.+..+.|. ++..+.-.+.-++++..   +++++..+|++..+.. .|  +...+-.|--+|.+.|++++|.+
T Consensus        15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            445555555555443 45555555666666666   4556666666666653 13  12333344456667777777777


Q ss_pred             HHHHHHHCCC
Q 014860          382 LLKELQNKNL  391 (417)
Q Consensus       382 ~~~~m~~~~~  391 (417)
                      .++.+.+...
T Consensus        93 y~~~lL~ieP  102 (152)
T 1pc2_A           93 YVRGLLQTEP  102 (152)
T ss_dssp             HHHHHHHHCT
T ss_pred             HHHHHHhcCC
Confidence            7777666543

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.17  E-value=0.35  Score=34.07  Aligned_cols=49  Identities=16%  Similarity=0.106  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          341 VEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       341 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      .++|..++++..+. -+-+......+-..+.+.|++++|...|+++.+..
T Consensus        25 ~~~A~~~l~~AL~~-dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A           25 TDEVSLLLEQALQL-EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHH-CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            34455555444443 11223334444444445555555555555554443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.83  E-value=0.17  Score=36.58  Aligned_cols=68  Identities=13%  Similarity=0.086  Sum_probs=55.0

Q ss_pred             CCHHHHHHHHHHHHccCChhHHHHHHHHHHcCC-----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860          135 HDASTYHIMTRKLGAAKMYQEMDDVVNQMLATP-----SFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       135 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      .+...+-.+...+.+.|+++.|...++...+..     .......++..+..+|.+.|+++.|...+++..+.
T Consensus         3 Lsa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            3 LTAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            466677778888889999999999888877642     11156788899999999999999999999999875

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.76  E-value=0.43  Score=34.33  Aligned_cols=66  Identities=9%  Similarity=0.037  Sum_probs=39.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          289 NSFSYDYLIHGLCAQGRTKNARELCDEMKRK------GFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       289 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      +..-+-.|-..+.+.|+++.|..+|+...+.      +-.+....+..|..+|.+.|++++|..++++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l   75 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL   75 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            3444555666666667777777666665542      01224455666666666666666666666666653

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=93.81  E-value=0.42  Score=41.51  Aligned_cols=108  Identities=11%  Similarity=0.038  Sum_probs=80.9

Q ss_pred             ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh-----CCHHHHHHHHHHhHhCCCCCCCC--CHHHHHHHHHHHHhc
Q 014860          152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA-----RKLSRAVYVFKYMKNSRNLECRP--SIRSYNILFTAFLSR  224 (417)
Q Consensus       152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~g~~p--~~~~~~~li~~~~~~  224 (417)
                      ....|...+++..+....-.+...|..+...|.+.     |+.++|.+.|++..+.     .|  +..++......++..
T Consensus       178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L-----nP~~~id~~v~YA~~l~~~  252 (301)
T 3u64_A          178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY-----CSAHDPDHHITYADALCIP  252 (301)
T ss_dssp             HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH-----CCTTCSHHHHHHHHHTTTT
T ss_pred             hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh-----CCCCCchHHHHHHHHHHHh
Confidence            45667778888888763222467899999999994     9999999999999986     55  377788888888884


Q ss_pred             -CCccchhhhhHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014860          225 -GKNTYINHVYMETIRCLFKQMVNDGIE--PDIFSLNSMIKGYILSNHVNDALRIFHQM  280 (417)
Q Consensus       225 -g~~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m  280 (417)
                       |+        .+++.+.+++..+....  |+....|.+-.        ++|..++++.
T Consensus       253 ~gd--------~~~a~~~L~kAL~a~p~~~P~~~lan~~~q--------~eA~~LL~~~  295 (301)
T 3u64_A          253 LNN--------RAGFDEALDRALAIDPESVPHNKLLVILSQ--------KRARWLKAHV  295 (301)
T ss_dssp             TTC--------HHHHHHHHHHHHHCCGGGCSSCHHHHHHHH--------HHHHHHHHTH
T ss_pred             cCC--------HHHHHHHHHHHHcCCCCCCCChhHHHHHHH--------HHHHHHHHHh
Confidence             88        99999999999988766  66655554432        4555555444

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.62  E-value=6.6  Score=36.62  Aligned_cols=150  Identities=16%  Similarity=0.121  Sum_probs=92.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhh-CCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HH
Q 014860          257 LNSMIKGYILSNHVNDALRIFHQMGVV-YNYLPN---SFSYDYLIHGLCAQGRTKNARELCDEMKR----KGFVPS--SK  326 (417)
Q Consensus       257 ~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~~~~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~--~~  326 (417)
                      ...|...|...|++.+|.+++..+... .+....   ...+...+..|...+++..|..+++.+..    ....|+  ..
T Consensus       140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~  219 (445)
T 4b4t_P          140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence            345778889999999999999998542 222222   45677788889999999999999988753    222233  24


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHH----HHHHHHcCCHhHHHHHHHHHHH-CCCCChhhHHHH
Q 014860          327 SYNSLVSALALNGEVEETVKNLWEMIEK-QRPVDFITYRTV----LDEICRRGRAGEAMKLLKELQN-KNLIDGYTYTKL  400 (417)
Q Consensus       327 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~l----i~~~~~~g~~~~A~~~~~~m~~-~~~p~~~t~~~l  400 (417)
                      .|...+..+...+++.+|...|.+..+. ...-|...+..+    +....-.+...+--.++..... ...++...|..+
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L  299 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESL  299 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHH
Confidence            5677888888999999999888887653 112233322222    2222222222222233333222 223456677777


Q ss_pred             HHHHHh
Q 014860          401 LDVLED  406 (417)
Q Consensus       401 l~~~~~  406 (417)
                      ++++..
T Consensus       300 ~k~f~~  305 (445)
T 4b4t_P          300 VKLFTT  305 (445)
T ss_dssp             HHHHHH
T ss_pred             HHHHHh
Confidence            777654

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=92.43  E-value=1.7  Score=33.72  Aligned_cols=80  Identities=5%  Similarity=0.037  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC---CHHHHHHHHHHhHhCCCCCCCC--CHHHHHHHHHHHHhcCCccc
Q 014860          155 EMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR---KLSRAVYVFKYMKNSRNLECRP--SIRSYNILFTAFLSRGKNTY  229 (417)
Q Consensus       155 ~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~g~~p--~~~~~~~li~~~~~~g~~~~  229 (417)
                      .+++-|....+.+.  ++..+.-.+.-++++.+   ++++++.+|++..+.   + .|  ....+-.+--+|.+.|+   
T Consensus        16 ~~~~~y~~e~~~~~--~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~---~-~p~~~rd~lY~LAv~~~kl~~---   86 (152)
T 1pc2_A           16 KFEKKFQSEKAAGS--VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK---G-SKEEQRDYVFYLAVGNYRLKE---   86 (152)
T ss_dssp             HHHHHHHHHHHTTC--CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH---S-CHHHHHHHHHHHHHHHHHTSC---
T ss_pred             HHHHHHHHHHccCC--CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc---C-CccchHHHHHHHHHHHHHccC---
Confidence            34444444444333  44455555555555555   444566666655554   1 12  23334444445556666   


Q ss_pred             hhhhhHHHHHHHHHHHHHC
Q 014860          230 INHVYMETIRCLFKQMVND  248 (417)
Q Consensus       230 ~~~~~~~~a~~~~~~m~~~  248 (417)
                           +++|.+.++.+.+.
T Consensus        87 -----Y~~A~~y~~~lL~i  100 (152)
T 1pc2_A           87 -----YEKALKYVRGLLQT  100 (152)
T ss_dssp             -----HHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHhc
Confidence                 66666666665554

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=91.89  E-value=1.8  Score=33.46  Aligned_cols=67  Identities=9%  Similarity=0.009  Sum_probs=46.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHH
Q 014860          338 NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLE  405 (417)
Q Consensus       338 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~  405 (417)
                      .++.++|.++|+.++..+-+. ...|-....-=.+.|+.+.|.+++..-+..+..+...+...|+.+.
T Consensus        73 i~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~~nl~  139 (161)
T 4h7y_A           73 IQEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIALRNLN  139 (161)
T ss_dssp             HHCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHHHhhh
Confidence            367788888888886653333 5555544444567888888888888888876557777777777764

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.86  E-value=3.4  Score=37.81  Aligned_cols=70  Identities=11%  Similarity=0.077  Sum_probs=46.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 014860          257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKR-----KGFVPSSKSY  328 (417)
Q Consensus       257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~~~  328 (417)
                      ...++..+...|++++|...+..+...  -+.+...|..+|.++.+.|+..+|++.|++..+     .|+.|+..+-
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~--~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~  248 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFE--HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  248 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence            344566666777777777776666542  234666777777777777777777777766543     3777776654

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=91.29  E-value=1.2  Score=40.89  Aligned_cols=72  Identities=8%  Similarity=-0.009  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCCHHHHH
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK-----QRPVDFITYR  364 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~~~~  364 (417)
                      +...++..+...|++++|...+..+... -+.+...|..+|.+|.+.|+..+|++.|+...+.     |+.|...+-.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~  249 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA  249 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence            3456778888999999999999988765 3458889999999999999999999999987653     9999987643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=91.16  E-value=1.9  Score=32.21  Aligned_cols=85  Identities=13%  Similarity=-0.007  Sum_probs=48.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHHcCCCC-CH-HHHHHHHHHHHHcCCHhHH
Q 014860          305 RTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEE---TVKNLWEMIEKQRPV-DF-ITYRTVLDEICRRGRAGEA  379 (417)
Q Consensus       305 ~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~---A~~~~~~m~~~g~~p-~~-~~~~~li~~~~~~g~~~~A  379 (417)
                      ....+.+-|.+....|. ++..+--.+.-++.+..+..+   ++.+++++...+ .| +. ...-.|.-++.+.|++++|
T Consensus        16 ~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           16 DLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence            34445555555544443 455555556666666665544   666776666542 12 12 2223344567777777777


Q ss_pred             HHHHHHHHHCCC
Q 014860          380 MKLLKELQNKNL  391 (417)
Q Consensus       380 ~~~~~~m~~~~~  391 (417)
                      .+.++.+.+...
T Consensus        94 ~~~~~~lL~~eP  105 (126)
T 1nzn_A           94 LKYVRGLLQTEP  105 (126)
T ss_dssp             HHHHHHHHHHCT
T ss_pred             HHHHHHHHHhCC
Confidence            777777777654

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=90.29  E-value=3.2  Score=29.42  Aligned_cols=68  Identities=10%  Similarity=0.171  Sum_probs=47.4

Q ss_pred             HHccC-ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH
Q 014860          147 LGAAK-MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT  219 (417)
Q Consensus       147 ~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~  219 (417)
                      +.+.. +.=+.++-++.+...+.+ |++.+..+.+++|-+.+++..|+++|+-++.+    +......|..++.
T Consensus        19 F~~~~iD~~e~rrglN~l~~~DlV-P~P~ii~aaLrAcRRvND~alAVR~lE~iK~K----~~~~~~iY~~~lq   87 (109)
T 1v54_E           19 FNKPDIDAWELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDK----AGPHKEIYPYVIQ   87 (109)
T ss_dssp             HTCTTCCHHHHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTTCTTHHHHHHH
T ss_pred             cCCcCccHHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH----hcCchhhHHHHHH
Confidence            33444 455667777777777777 88888888888888888888888888888775    2333344555443

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=89.96  E-value=12  Score=34.76  Aligned_cols=265  Identities=9%  Similarity=0.047  Sum_probs=158.7

Q ss_pred             CChhHHHHHHHHhhc----CCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH----HHHh
Q 014860          115 EDPLVCLELFNWASK----QPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF----FAEA  186 (417)
Q Consensus       115 ~~~~~A~~~~~~~~~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~----~~~~  186 (417)
                      ++++.|++.+..+.+    ......+......++..|...|+++...+.+..+.+....  .......+++.    ....
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~q--lk~ai~~~V~~~~~~l~~~  107 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQ--LKLSIQYMIQKVMEYLKSS  107 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTT--SHHHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhcC
Confidence            668888887765533    3445678889999999999999999998888877765443  22333344443    3334


Q ss_pred             CCHHH--HHHHHHHhHhCCCCCCCC---CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH--CCCCCC---HHH
Q 014860          187 RKLSR--AVYVFKYMKNSRNLECRP---SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN--DGIEPD---IFS  256 (417)
Q Consensus       187 g~~~~--a~~~~~~m~~~~~~g~~p---~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~--~g~~p~---~~~  256 (417)
                      ...+.  -..+.+......+..+..   .......|...+-..|+        +.+|.+++.++..  .|....   ...
T Consensus       108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~--------~~eA~~iL~~l~~Et~~~~~~~~kve~  179 (445)
T 4b4t_P          108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGK--------IDEAADILCELQVETYGSMEMSEKIQF  179 (445)
T ss_dssp             CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHCSSSCHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccC--------HHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence            43332  223333222211111122   12344668888999999        9999999999864  232222   346


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhh---CCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHH
Q 014860          257 LNSMIKGYILSNHVNDALRIFHQMGVV---YNYLPN--SFSYDYLIHGLCAQGRTKNARELCDEMKRK-GFVPSSKSYNS  330 (417)
Q Consensus       257 ~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~~~~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~~~~~  330 (417)
                      +...+..|...+++..|..++......   ....|+  ..-+...+..+...+++.+|-..|.+..+. ...-|...+..
T Consensus       180 ~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~  259 (445)
T 4b4t_P          180 ILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKP  259 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHH
Confidence            677888999999999999999987431   112222  245667777788889999998888777542 11123332222


Q ss_pred             H----HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--CCHhHHHHHHHHHHHC
Q 014860          331 L----VSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR--GRAGEAMKLLKELQNK  389 (417)
Q Consensus       331 l----i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~  389 (417)
                      +    +.+..-.+....-..++........-++...|..++.+|...  .+++.+.+.|......
T Consensus       260 ~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~  324 (445)
T 4b4t_P          260 VLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE  324 (445)
T ss_dssp             HHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred             HHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence            2    112222222222222333333322235667889999999765  4567777777655443

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.60  E-value=2  Score=42.84  Aligned_cols=126  Identities=11%  Similarity=0.022  Sum_probs=72.9

Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHhhhhCCCCCCHHH--HHHHHHHHHhcCC-HHHHHHHHHHHHHC------CCCC-CHH
Q 014860          258 NSMIKGYILSNH-VNDALRIFHQMGVVYNYLPNSFS--YDYLIHGLCAQGR-TKNARELCDEMKRK------GFVP-SSK  326 (417)
Q Consensus       258 ~~li~~~~~~g~-~~~a~~~~~~m~~~~~~~~~~~~--~~~li~~~~~~g~-~~~A~~l~~~m~~~------g~~p-~~~  326 (417)
                      ..++..+...|+ .+.|..+|+++.+.   .|....  ...+|..+...++ --+|.+++.+..+.      ...+ +..
T Consensus       252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~  328 (754)
T 4gns_B          252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD  328 (754)
T ss_dssp             HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred             HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence            334444444555 57788888887663   233222  2233333333332 22455555444321      1111 111


Q ss_pred             ----------HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860          327 ----------SYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQ  387 (417)
Q Consensus       327 ----------~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  387 (417)
                                ..+.=.+-|...|+++.|+++-++.... .+-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus       329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                      1111133455678999999998888765 23346799999999999999999999988874

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=89.20  E-value=4  Score=31.46  Aligned_cols=109  Identities=14%  Similarity=0.131  Sum_probs=54.8

Q ss_pred             CCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHH------hcCCHHHHHHHHHHhh
Q 014860          209 PSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDI-FSLNSMIKGYI------LSNHVNDALRIFHQMG  281 (417)
Q Consensus       209 p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~------~~g~~~~a~~~~~~m~  281 (417)
                      -|..+|-..+...-+.|+.. .+ ..+++..++|++.... ++|+. ..|...|..+.      ..++.++|.++|+.+.
T Consensus        11 ~~yd~W~~yl~llE~~g~p~-~d-~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~   87 (161)
T 4h7y_A           11 NNPEDWLSLLLKLEKNSVPL-SD-ALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMAR   87 (161)
T ss_dssp             CSHHHHHHHHHHHHHHTCSC-CH-HHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCc-hh-hHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            36677777777777777711 01 1137777777776653 34442 11222222211      2245555666665554


Q ss_pred             hhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 014860          282 VVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFV  322 (417)
Q Consensus       282 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~  322 (417)
                      ..  .+--...|-....--.+.|++..|.+++......+.+
T Consensus        88 ~~--hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           88 AN--CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HH--CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HH--hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            42  1122444444444445555555555555555555444

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=88.29  E-value=9.8  Score=38.00  Aligned_cols=129  Identities=14%  Similarity=0.050  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHhCC-HHHHHHHHHHhHhCCCCCCCCCHHH-HH-HHHHHHHhcCCccchhhhhHHHHHHHHHHHHH---
Q 014860          174 ALYNTIIYFFAEARK-LSRAVYVFKYMKNSRNLECRPSIRS-YN-ILFTAFLSRGKNTYINHVYMETIRCLFKQMVN---  247 (417)
Q Consensus       174 ~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~g~~p~~~~-~~-~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~---  247 (417)
                      .....++..+...++ ++.|+.+|+++.+.     .|...+ +. .+|..+...++ .      --+|.+++.+..+   
T Consensus       249 ~L~~~Ll~~~~~t~~~~~~a~~~le~L~~~-----~p~~~~~~~~~~i~~~~~~~~-~------Ev~av~ll~~~l~~~~  316 (754)
T 4gns_B          249 YLMYSLKSFIAITPSLVDFTIDYLKGLTKK-----DPIHDIYYKTAMITILDHIET-K------ELDMITILNETLDPLL  316 (754)
T ss_dssp             HHHHHHHHHHHTCGGGHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHTTCGG-G------HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccccHHHHHHHHHHHHHhh-----CCchhHHHHHHHHHHHHHhhh-h------hHHHHHHHHHHHHHhh
Confidence            344566666666666 68899999999886     444333 22 33333333332 1      2334444443331   


Q ss_pred             ----CCCCCCHH----------HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 014860          248 ----DGIEPDIF----------SLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELC  313 (417)
Q Consensus       248 ----~g~~p~~~----------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~  313 (417)
                          .-..-+..          ....=.+-+...|+++.|+++.++...-  .+-+-.+|..|..+|...|+++.|+-.+
T Consensus       317 ~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtL  394 (754)
T 4gns_B          317 SLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAI  394 (754)
T ss_dssp             HHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence                11111111          1222234566789999999999998762  2345889999999999999999999999


Q ss_pred             HHH
Q 014860          314 DEM  316 (417)
Q Consensus       314 ~~m  316 (417)
                      +.+
T Consensus       395 NSc  397 (754)
T 4gns_B          395 NSM  397 (754)
T ss_dssp             HHS
T ss_pred             hcC
Confidence            887

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=88.16  E-value=5.4  Score=28.30  Aligned_cols=47  Identities=17%  Similarity=0.173  Sum_probs=23.2

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          308 NARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       308 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      +..+-++.+....+.|+.....+.+++|.+..++..|.++|+..+.+
T Consensus        28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34444444444445555555555555555555555555555544443

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.46  E-value=21  Score=37.78  Aligned_cols=54  Identities=15%  Similarity=0.130  Sum_probs=35.4

Q ss_pred             HHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860          142 IMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKN  201 (417)
Q Consensus       142 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  201 (417)
                      .++..+...+..+.+.++..-..      .+...--.+.++|..+|++++|.+.|.+...
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~  870 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL  870 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC
T ss_pred             HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Confidence            45556666777777666554332      2334444566788889999999999987643

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=86.62  E-value=4.9  Score=29.93  Aligned_cols=23  Identities=17%  Similarity=0.151  Sum_probs=12.3

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 014860          331 LVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      |.-++.+.|++++|.++++.+.+
T Consensus        80 LAvg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           80 LAVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHH
Confidence            34455555555555555555554

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=86.36  E-value=7.2  Score=29.32  Aligned_cols=63  Identities=11%  Similarity=0.170  Sum_probs=44.9

Q ss_pred             ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH
Q 014860          152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT  219 (417)
Q Consensus       152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~  219 (417)
                      |.=+..+-++.+...+.+ |++.+..+.+++|-+.+++..|+++|+-++.+    +.+....|..++.
T Consensus        68 D~wElrrglN~l~~~DlV-PeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K----~~~~~~iY~y~lq  130 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDK----AGPHKEIYPYVIQ  130 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh----cCCchhhHHHHHH
Confidence            444566677777777777 88888888888888888888888888888775    3333444554443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=85.95  E-value=33  Score=35.13  Aligned_cols=147  Identities=11%  Similarity=0.064  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHHHhhhhCCCCCCHHHHH---HHHHHHHhcCCHHHH
Q 014860          235 METIRCLFKQMVNDGIEPDIFSLNSMIKG--YILSNHVNDALRIFHQMGVVYNYLPNSFSYD---YLIHGLCAQGRTKNA  309 (417)
Q Consensus       235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~---~li~~~~~~g~~~~A  309 (417)
                      .+.+..++..+.+..   +..+...+..+  +...|+.+.+..+++.+...  ..|. .-|.   ++.-+|+..|+....
T Consensus       506 ~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~--~dp~-vRygaa~alglAyaGTGn~~aI  579 (963)
T 4ady_A          506 PEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQELADDLITKMLAS--DESL-LRYGGAFTIALAYAGTGNNSAV  579 (963)
T ss_dssp             HHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHC--SCHH-HHHHHHHHHHHHTTTSCCHHHH
T ss_pred             HHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhC--CCHH-HHHHHHHHHHHHhcCCCCHHHH
Confidence            444555555554431   22333333333  33567777777777776652  1122 2222   223345566776666


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-hHHHHHHHHHHH
Q 014860          310 RELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRA-GEAMKLLKELQN  388 (417)
Q Consensus       310 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~  388 (417)
                      .+++..+.+.. ..++.....+--++...|+.+.+.++++.+.+.+ .|.+.--..+.-+....|.. .++..++..+..
T Consensus       580 q~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~  657 (963)
T 4ady_A          580 KRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK  657 (963)
T ss_dssp             HHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred             HHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence            66777776542 2233333333334444555555556655554432 23333333333344444443 466667777765


Q ss_pred             C
Q 014860          389 K  389 (417)
Q Consensus       389 ~  389 (417)
                      .
T Consensus       658 D  658 (963)
T 4ady_A          658 D  658 (963)
T ss_dssp             C
T ss_pred             C
Confidence            3

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=85.06  E-value=42  Score=35.49  Aligned_cols=149  Identities=11%  Similarity=0.073  Sum_probs=91.0

Q ss_pred             HHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCC---------------
Q 014860          105 EELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSF---------------  169 (417)
Q Consensus       105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---------------  169 (417)
                      ..++..+...+.++.|.++..|..      .++..--.+..++...|++++|.+.|.+....-..               
T Consensus       816 ~~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~  889 (1139)
T 4fhn_B          816 TELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIA  889 (1139)
T ss_dssp             HHHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccc
Confidence            346666777888999998888773      24444345566788999999999999775321100               


Q ss_pred             ------CCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC--HHHHHHHHHHHHhcCCccchhhhhHHHHHHH
Q 014860          170 ------CGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS--IRSYNILFTAFLSRGKNTYINHVYMETIRCL  241 (417)
Q Consensus       170 ------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~--~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~  241 (417)
                            ..-..-|..++..+-+.+.++.++++-....+....+ .++  ...|..++.++...|+        +++|...
T Consensus       890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~-~~~~~~~l~~~iFk~~L~l~~--------ye~Ay~a  960 (1139)
T 4fhn_B          890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETD-DEDLSIAITHETLKTACAAGK--------FDAAHVA  960 (1139)
T ss_dssp             HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSC-CHHHHHHHHHHHHHHHHHHCC--------SGGGGHH
T ss_pred             ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCC-ChhhHHHHHHHHHHHHHhhCC--------HHHHHHH
Confidence                  0112346667777777777777776666555431000 111  1246777777777777        7777777


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 014860          242 FKQMVNDGIEPDIFSLNSMIKGYILSNHV  270 (417)
Q Consensus       242 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~  270 (417)
                      +-.+.+...  -......+|...|..|..
T Consensus       961 L~~~pd~~~--r~~cLr~LV~~lce~~~~  987 (1139)
T 4fhn_B          961 LMVLSTTPL--KKSCLLDFVNQLTKQGKI  987 (1139)
T ss_dssp             HHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred             HHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence            766665432  234555566666655543

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=84.91  E-value=11  Score=28.44  Aligned_cols=60  Identities=13%  Similarity=0.112  Sum_probs=29.4

Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHH
Q 014860          345 VKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVL  404 (417)
Q Consensus       345 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~  404 (417)
                      .+-++.+....+.|++....+.+++|-+.+++..|.++|+-.+.+--+...+|..+++-+
T Consensus        73 rrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~lqEl  132 (152)
T 2y69_E           73 RKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVIQEL  132 (152)
T ss_dssp             HHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHHHHH
T ss_pred             HHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHHHHH
Confidence            333444444445555555555555555555555555555555544322333344444443

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=84.60  E-value=39  Score=34.68  Aligned_cols=275  Identities=9%  Similarity=0.025  Sum_probs=150.8

Q ss_pred             HhccCChhHHHHHHHHhhcCCC-CCCC---HHHHHHHHHHHH--ccCC-hhHHHHHHHHHHcCCCCCCCHHH--HH--HH
Q 014860          111 MTLQEDPLVCLELFNWASKQPR-FRHD---ASTYHIMTRKLG--AAKM-YQEMDDVVNQMLATPSFCGTEAL--YN--TI  179 (417)
Q Consensus       111 l~~~~~~~~A~~~~~~~~~~~~-~~~~---~~~~~~li~~~~--~~~~-~~~a~~~~~~m~~~~~~~~~~~~--~~--~l  179 (417)
                      +...|...++++++........ +.-+   ...-...+-+++  -.|. -+++.+.+..+....    +..+  ..  +|
T Consensus       421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd----~~~~~~~AalAL  496 (963)
T 4ady_A          421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND----SATSGEAAALGM  496 (963)
T ss_dssp             HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC----CHHHHHHHHHHH
T ss_pred             HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC----CHHHHHHHHHHH
Confidence            3556665677776666543221 1111   111111222333  2332 245666666665542    2221  11  22


Q ss_pred             HHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHH--HHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 014860          180 IYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFT--AFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL  257 (417)
Q Consensus       180 i~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~--~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  257 (417)
                      .-.+.-.|+-+....++..+.+.     . +......+..  ++...|+        .+.+..+.+.+.... .|...--
T Consensus       497 Gli~vGTgn~~ai~~LL~~~~e~-----~-~e~vrR~aalgLGll~~g~--------~e~~~~li~~L~~~~-dp~vRyg  561 (963)
T 4ady_A          497 GLCMLGTGKPEAIHDMFTYSQET-----Q-HGNITRGLAVGLALINYGR--------QELADDLITKMLASD-ESLLRYG  561 (963)
T ss_dssp             HHHHTTCCCHHHHHHHHHHHHHC-----S-CHHHHHHHHHHHHHHTTTC--------GGGGHHHHHHHHHCS-CHHHHHH
T ss_pred             hhhhcccCCHHHHHHHHHHHhcc-----C-cHHHHHHHHHHHHhhhCCC--------hHHHHHHHHHHHhCC-CHHHHHH
Confidence            23344557878788888877764     1 3333333433  4456788        777777778777642 2222222


Q ss_pred             H--HHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          258 N--SMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIH--GLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS  333 (417)
Q Consensus       258 ~--~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~--~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~  333 (417)
                      .  ++.-+|+..|+.....++++.+..+    ++..+-...+.  ++...|+.+.+.++++.+.+.+ .|.++.-.++.-
T Consensus       562 aa~alglAyaGTGn~~aIq~LL~~~~~d----~~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalAL  636 (963)
T 4ady_A          562 GAFTIALAYAGTGNNSAVKRLLHVAVSD----SNDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFAL  636 (963)
T ss_dssp             HHHHHHHHTTTSCCHHHHHHHHHHHHHC----SCHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCCHHHHHHHHHHhccC----CcHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHH
Confidence            2  3344677888988888899998862    33333333333  4445777777788887666654 456655555555


Q ss_pred             HHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---------CHhHHHHHHHHHHHCCC--CChhhHHHHH
Q 014860          334 ALALNGEV-EETVKNLWEMIEKQRPVDFITYRTVLDEICRRG---------RAGEAMKLLKELQNKNL--IDGYTYTKLL  401 (417)
Q Consensus       334 ~~~~~g~~-~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m~~~~~--p~~~t~~~ll  401 (417)
                      +....|.. .++.+.+..+...   +|..+-..-+.+++..|         ++...++.+.......-  ++...-..+-
T Consensus       637 Gli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iA  713 (963)
T 4ady_A          637 GIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVA  713 (963)
T ss_dssp             HHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHH
T ss_pred             HHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence            55555553 5788888888753   56655554555554433         34444454444444322  3345555566


Q ss_pred             HHHHhhcCccc
Q 014860          402 DVLEDDFGNSI  412 (417)
Q Consensus       402 ~~~~~~~~~~~  412 (417)
                      .++...||+.+
T Consensus       714 qGll~aG~~n~  724 (963)
T 4ady_A          714 QGIMNAGGRNV  724 (963)
T ss_dssp             HHHHTTGGGTE
T ss_pred             HHHHhcCCCce
Confidence            78888777653

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=83.83  E-value=4.5e-05  Score=70.49  Aligned_cols=253  Identities=9%  Similarity=0.085  Sum_probs=163.0

Q ss_pred             CCCCCCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHH
Q 014860           98 LPPRFNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYN  177 (417)
Q Consensus        98 ~p~~~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  177 (417)
                      ...+..|..|..+....+...+|++.|-    +   .-|+..|..+|.+..+.|.+++-...+....+..   .+..+=+
T Consensus        51 ~n~p~VWs~LgkAqL~~~~v~eAIdsyI----k---A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDt  120 (624)
T 3lvg_A           51 CNEPAVWSQLAKAQLQKGMVKEAIDSYI----K---ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVET  120 (624)
T ss_dssp             CCCCCCSSSHHHHTTTSSSCTTTTTSSC----C---CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTH
T ss_pred             hCCccHHHHHHHHHHccCchHHHHHHHH----h---CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHH
Confidence            3445678888888888888888877651    2   2477788888888888888888777776555442   3445556


Q ss_pred             HHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 014860          178 TIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL  257 (417)
Q Consensus       178 ~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  257 (417)
                      .|+-+|++.+++.+..+++    .      .|+..-...+-.-|...|.        ++.|.-+|..+.         -|
T Consensus       121 eLi~ayAk~~rL~elEefl----~------~~N~A~iq~VGDrcf~e~l--------YeAAKilys~is---------N~  173 (624)
T 3lvg_A          121 ELIFALAKTNRLAELEEFI----N------GPNNAHIQQVGDRCYDEKM--------YDAAKLLYNNVS---------NF  173 (624)
T ss_dssp             HHHHHHHTSCSSSTTTSTT----S------CCSSSCTHHHHHHHHHSCC--------STTSSTTGGGSC---------CC
T ss_pred             HHHHHHHhhCcHHHHHHHH----c------CCCcccHHHHHHHHHHccC--------HHHHHHHHHhCc---------cH
Confidence            7888888888766543332    1      2444445566677777777        666655553322         23


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860          258 NSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALAL  337 (417)
Q Consensus       258 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~  337 (417)
                      .-|-..+.+.|++..|.+.-++       ..++.||-.+-.+|...+.+.-|.-.--.+.-.   ||  -...++..|-.
T Consensus       174 akLAstLV~L~~yq~AVdaArK-------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~  241 (624)
T 3lvg_A          174 GRLASTLVHLGEYQAAVDGARK-------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQD  241 (624)
T ss_dssp             TTTSSSSSSCSGGGSSTTTTTT-------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSST
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-------cCChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHh
Confidence            3444556677777666443222       256778999999999999988776554444432   12  23456778889


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHC-CCCChhhHHHHHHHHHhh
Q 014860          338 NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNK-NLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       338 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~p~~~t~~~ll~~~~~~  407 (417)
                      .|.+++-..+++.-... -+.....|+-|.-.|++- +.++.++.++-.-.+ ++|      .+|++|.+.
T Consensus       242 ~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNip------KviracE~a  304 (624)
T 3lvg_A          242 RGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIP------KVLRAAEQA  304 (624)
T ss_dssp             TCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCT------TTHHHHTTT
T ss_pred             CCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHH------HHHHHHHHH
Confidence            99999988888776632 245677888888888877 555555555443222 223      356777655

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=83.10  E-value=12  Score=30.28  Aligned_cols=78  Identities=14%  Similarity=0.249  Sum_probs=63.9

Q ss_pred             CCCCCCCHHHHHHHHHHHHc--cCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCC
Q 014860          130 QPRFRHDASTYHIMTRKLGA--AKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLEC  207 (417)
Q Consensus       130 ~~~~~~~~~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~  207 (417)
                      ...++-|+.-....|...-.  .++..++.++|..|...+....-...|......+-..|++++|.++|+.-.++   +-
T Consensus        70 ~~rYkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~---~A  146 (202)
T 3esl_A           70 METYRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN---NC  146 (202)
T ss_dssp             CGGGTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TC
T ss_pred             cccccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC
Confidence            44567788777766665444  56678999999999999887678899999999999999999999999999987   56


Q ss_pred             CCC
Q 014860          208 RPS  210 (417)
Q Consensus       208 ~p~  210 (417)
                      .|-
T Consensus       147 ~P~  149 (202)
T 3esl_A          147 RPY  149 (202)
T ss_dssp             BSH
T ss_pred             ccH
Confidence            663

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=80.06  E-value=30  Score=30.30  Aligned_cols=173  Identities=10%  Similarity=-0.038  Sum_probs=94.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD  253 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~  253 (417)
                      ..|.++..-|.+.+++++|++++..--..                  +.+.|+...+    .|.|.-+.+...+.+++++
T Consensus        34 Q~~Rtl~~Ry~~~~~~~eAidlL~~ga~~------------------ll~~~Q~~sa----~DLa~llvev~~~~~~~~~   91 (312)
T 2wpv_A           34 QTLRTIANRYVRSKSYEHAIELISQGALS------------------FLKAKQGGSG----TDLIFYLLEVYDLAEVKVD   91 (312)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------------------HHHTTCHHHH----HHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHH------------------HHHCCCcchH----HHHHHHHHHHHHHcCCCCC
Confidence            45667777788888888888776554332                  3444551110    3344445566666777888


Q ss_pred             HHHHHHHHHHHHhcCC-----HHHHHHHHHHhhhhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH
Q 014860          254 IFSLNSMIKGYILSNH-----VNDALRIFHQMGVVYN-YLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKS  327 (417)
Q Consensus       254 ~~~~~~li~~~~~~g~-----~~~a~~~~~~m~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~  327 (417)
                      .....-++..+.....     .+-..+......+..+ -.-+......+-..|.+.|++.+|+.-|-    .|-.-|...
T Consensus        92 ~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~  167 (312)
T 2wpv_A           92 DISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIK  167 (312)
T ss_dssp             HHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHH
Confidence            7777777776655332     1222223333333111 12366777788888888888888877654    111113445


Q ss_pred             HHHHHHHHHhc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHH
Q 014860          328 YNSLVSALALN---GEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQ  387 (417)
Q Consensus       328 ~~~li~~~~~~---g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  387 (417)
                      +..++--+...   |...++-              ... ...+--|.-.|+...|..+|+...
T Consensus       168 ~a~~l~~w~~~~~~~~~~e~d--------------lf~-~RaVL~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          168 YVDLLWDWLCQVDDIEDSTVA--------------EFF-SRLVFNYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHHHHHHHHHHTTCCCHHHHH--------------HHH-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCCcchHH--------------HHH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence            55555444443   4333321              111 222233455677777777777654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	417
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.76
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.74
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.54
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.53
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.13
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.12
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.11
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.06
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.01
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.93
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.88
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.78
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.73
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.4
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.39
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.35
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.34
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.19
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.15
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.13
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.12
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.11
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.1
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.09
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.07
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.93
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	97.91
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.88
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	97.71
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.63
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.6
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.57
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.54
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.54
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.52
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.51
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.49
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.45
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.36
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.32
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.3
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.28
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.26
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.22
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.16
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.12
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.07
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.04
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.83
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.77
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.66
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	96.41
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.36
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.92
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	95.74
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	94.08
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	93.74
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	90.69
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	89.36
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	88.75
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	87.6
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	80.23

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=4.3e-15  Score=135.84  Aligned_cols=301  Identities=13%  Similarity=0.060  Sum_probs=242.3

Q ss_pred             hhHHHHHHhcCCCCC-CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcC
Q 014860           88 DTQFRCAVSELPPRF-NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLAT  166 (417)
Q Consensus        88 ~~~~~~~l~~~p~~~-~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  166 (417)
                      ...+.+.+...|+.. .+..+..++...|++++|+..|+.+.+..  +-+..++..+..++.+.|++++|.+.+....+.
T Consensus        19 ~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~   96 (388)
T d1w3ba_          19 ERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRL   96 (388)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHhhhhcccccccccccccccc
Confidence            345667777777653 55667777889999999999999987654  457889999999999999999999988887764


Q ss_pred             CCCC------------------------------------------------------------------CCHHHHHHHH
Q 014860          167 PSFC------------------------------------------------------------------GTEALYNTII  180 (417)
Q Consensus       167 ~~~~------------------------------------------------------------------~~~~~~~~li  180 (417)
                      ....                                                                  .+...+..+.
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  176 (388)
T d1w3ba_          97 KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG  176 (388)
T ss_dssp             CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccCcchhHHHHhhc
Confidence            3210                                                                  1345566667


Q ss_pred             HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 014860          181 YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSM  260 (417)
Q Consensus       181 ~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l  260 (417)
                      ..+...|++++|...++...+..    +-+...|..+...+...|+        +++|...+++..+.+ +.+...+..+
T Consensus       177 ~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~~~~~~-~~~~~~~~~l  243 (388)
T d1w3ba_         177 CVFNAQGEIWLAIHHFEKAVTLD----PNFLDAYINLGNVLKEARI--------FDRAVAAYLRALSLS-PNHAVVHGNL  243 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHTTTC--------TTHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             ccccccCcHHHHHHHHHHHHHhC----cccHHHHHHHhhhhhcccc--------HHHHHHHHHHhHHHh-hhHHHHHHHH
Confidence            77888899999999999887751    3357788899999999999        999999999988765 4567778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 014860          261 IKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE  340 (417)
Q Consensus       261 i~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~  340 (417)
                      ...+.+.|++++|...|++..+.  .+-+...|..+...+...|++++|.+.++..... .+.+...+..+...+...|+
T Consensus       244 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~  320 (388)
T d1w3ba_         244 ACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQGN  320 (388)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchhhhHHHHHHHHCCC
Confidence            89999999999999999988762  2345778899999999999999999999988775 34577888999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          341 VEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       341 ~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                      +++|.+.|++..+. .+-+..++..+...|.+.|++++|.+.|++..+...-+...|..+-.++.+.
T Consensus       321 ~~~A~~~~~~al~~-~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~  386 (388)
T d1w3ba_         321 IEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEM  386 (388)
T ss_dssp             HHHHHHHHHHHTTS-CTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            99999999998875 2335667888999999999999999999998886544677888888777654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=1.3e-14  Score=132.50  Aligned_cols=284  Identities=11%  Similarity=0.027  Sum_probs=230.9

Q ss_pred             HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 014860          107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA  186 (417)
Q Consensus       107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  186 (417)
                      +...+-+.|++++|++.|+.+.+..  +-+...+..+..++.+.|++++|.+.++...+..+  .+..++..+..+|.+.
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~l~~~~~~~   80 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNP--LLAEAYSNLGNVYKER   80 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHhhhh
Confidence            3445667899999999999997654  45788999999999999999999999999988764  5678999999999999


Q ss_pred             CCHHHHHHHHHHhHhCCCC-------------------------------------------------------------
Q 014860          187 RKLSRAVYVFKYMKNSRNL-------------------------------------------------------------  205 (417)
Q Consensus       187 g~~~~a~~~~~~m~~~~~~-------------------------------------------------------------  205 (417)
                      |++++|+..+....+....                                                             
T Consensus        81 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (388)
T d1w3ba_          81 GQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLK  160 (388)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHH
Confidence            9999999999887764100                                                             


Q ss_pred             ---CCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhh
Q 014860          206 ---ECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       206 ---g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  282 (417)
                         ..+-+...+..+...+...|+        .++|...+++..+.. +-+...+..+...+...|++++|...+.....
T Consensus       161 ~~~~~~~~~~~~~~l~~~~~~~~~--------~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  231 (388)
T d1w3ba_         161 AIETQPNFAVAWSNLGCVFNAQGE--------IWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALS  231 (388)
T ss_dssp             HHHHCTTCHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH
T ss_pred             hhccCcchhHHHHhhcccccccCc--------HHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHH
Confidence               000123445555566666677        889999999887754 33567888899999999999999999999876


Q ss_pred             hCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 014860          283 VYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFIT  362 (417)
Q Consensus       283 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~  362 (417)
                      . . ..+...+..+...+.+.|++++|...|++..+... -+..++..+...+...|++++|.+.++..... .+.+...
T Consensus       232 ~-~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~  307 (388)
T d1w3ba_         232 L-S-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADS  307 (388)
T ss_dssp             H-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHH
T ss_pred             H-h-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhcc-CCccchh
Confidence            3 2 35677788889999999999999999999887642 25788999999999999999999999998876 4567788


Q ss_pred             HHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          363 YRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       363 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                      +..+...+...|++++|.+.|++..+...-+..++..+-.++.+.
T Consensus       308 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  352 (388)
T d1w3ba_         308 LNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            889999999999999999999999876544677777777777665

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.2e-11  Score=110.37  Aligned_cols=254  Identities=12%  Similarity=0.040  Sum_probs=187.7

Q ss_pred             HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 014860          107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA  186 (417)
Q Consensus       107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  186 (417)
                      ....+.+.|++++|+..|+.+.+..  +-+..+|..+..++...|++++|...+.+..+..+  .+...+..+...|...
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQD--PKHMEAWQYLGTTQAENEQELLAISALRRCLELKP--DNQTALMALAVSFTNE  100 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccc--cccccccccccccccc
Confidence            3445678999999999999998765  55789999999999999999999999999988764  5788999999999999


Q ss_pred             CCHHHHHHHHHHhHhCCCCCCCCCHH----------------HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC-
Q 014860          187 RKLSRAVYVFKYMKNSRNLECRPSIR----------------SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG-  249 (417)
Q Consensus       187 g~~~~a~~~~~~m~~~~~~g~~p~~~----------------~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g-  249 (417)
                      |++++|.+.+++....     .|+..                .....+..+...+.        .++|.+.|.+..+.. 
T Consensus       101 ~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~a~~~~~~al~~~p  167 (323)
T d1fcha_         101 SLQRQACEILRDWLRY-----TPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL--------FLEVKELFLAAVRLDP  167 (323)
T ss_dssp             TCHHHHHHHHHHHHHT-----STTTGGGCC---------------CTTHHHHHHHH--------HHHHHHHHHHHHHHST
T ss_pred             ccccccccchhhHHHh-----ccchHHHHHhhhhhhhhcccccchhhHHHHHHhhH--------HHHHHHHHHHHHHHhh
Confidence            9999999999998875     22211                01111122222333        777888887776532 


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          250 IEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYN  329 (417)
Q Consensus       250 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~  329 (417)
                      -..+..++..+...+...|++++|...|+......  +-+...|..+...|...|++++|.+.|++..+... -+..+|.
T Consensus       168 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~  244 (323)
T d1fcha_         168 TSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRY  244 (323)
T ss_dssp             TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred             cccccccchhhHHHHHHHHHHhhhhcccccccccc--cccccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHH
Confidence            23456777888888888999999999998876522  24577888888889999999999999988876532 2567788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHc----------CCCCCHHHHHHHHHHHHHcCCHhHHH
Q 014860          330 SLVSALALNGEVEETVKNLWEMIEK----------QRPVDFITYRTVLDEICRRGRAGEAM  380 (417)
Q Consensus       330 ~li~~~~~~g~~~~A~~~~~~m~~~----------g~~p~~~~~~~li~~~~~~g~~~~A~  380 (417)
                      .+..+|.+.|++++|.+.|++.++.          ........|..+-.++...|+.+.+.
T Consensus       245 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~  305 (323)
T d1fcha_         245 NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG  305 (323)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence            8888999999999999999887763          11122334555555666666655443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=6.4e-12  Score=112.19  Aligned_cols=228  Identities=11%  Similarity=-0.017  Sum_probs=185.8

Q ss_pred             HHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHH
Q 014860          143 MTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFL  222 (417)
Q Consensus       143 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~  222 (417)
                      ....+.+.|++++|...|+.+.+..+  .+...|..+..+|...|++++|...|++..+..    +-+...|..+...+.
T Consensus        25 ~g~~~~~~g~~~~A~~~~~~al~~~P--~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~la~~~~   98 (323)
T d1fcha_          25 EGLRRLQEGDLPNAVLLFEAAVQQDP--KHMEAWQYLGTTQAENEQELLAISALRRCLELK----PDNQTALMALAVSFT   98 (323)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHSCT--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc----ccccccccccccccc
Confidence            34567799999999999999998765  578899999999999999999999999988751    346788999999999


Q ss_pred             hcCCccchhhhhHHHHHHHHHHHHHCCCCCCHH----------------HHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC
Q 014860          223 SRGKNTYINHVYMETIRCLFKQMVNDGIEPDIF----------------SLNSMIKGYILSNHVNDALRIFHQMGVVYNY  286 (417)
Q Consensus       223 ~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----------------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  286 (417)
                      ..|+        +++|.+.+++.....  |+..                .....+..+...+.+.+|.+.+....+...-
T Consensus        99 ~~~~--------~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~  168 (323)
T d1fcha_          99 NESL--------QRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPT  168 (323)
T ss_dssp             HTTC--------HHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             cccc--------ccccccchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhc
Confidence            9999        999999999988653  2211                1112233344556778888888877654444


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 014860          287 LPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTV  366 (417)
Q Consensus       287 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  366 (417)
                      ..+...+..+...+...|++++|...+++...... -+...|..+..+|...|++++|.+.|++..+.. +-+...|..+
T Consensus       169 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~l  246 (323)
T d1fcha_         169 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNL  246 (323)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             ccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHH
Confidence            45678888999999999999999999999887532 267889999999999999999999999988752 2356788899


Q ss_pred             HHHHHHcCCHhHHHHHHHHHHH
Q 014860          367 LDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       367 i~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      ..+|.+.|++++|.+.|++.++
T Consensus       247 g~~~~~~g~~~~A~~~~~~al~  268 (323)
T d1fcha_         247 GISCINLGAHREAVEHFLEALN  268 (323)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHH
Confidence            9999999999999999998776

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.13  E-value=2.7e-08  Score=87.68  Aligned_cols=188  Identities=11%  Similarity=0.012  Sum_probs=120.6

Q ss_pred             CHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 014860          188 KLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILS  267 (417)
Q Consensus       188 ~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~  267 (417)
                      ..++|..+|++..+.   ..+.+...|...+......|+        .+.|..+|+++.+........+|...+..+.+.
T Consensus        79 ~~~~a~~i~~ral~~---~~p~~~~l~~~ya~~~~~~~~--------~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~  147 (308)
T d2onda1          79 FSDEAANIYERAIST---LLKKNMLLYFAYADYEESRMK--------YEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRA  147 (308)
T ss_dssp             HHHHHHHHHHHHHTT---TTTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHH---cCCCCHHHHHHHHHHHHhccc--------HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHc
Confidence            356677777777653   233455667777777777777        777777777777654222344677777777777


Q ss_pred             CCHHHHHHHHHHhhhhCCCCCCHHHHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 014860          268 NHVNDALRIFHQMGVVYNYLPNSFSYDYLIH-GLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVK  346 (417)
Q Consensus       268 g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~  346 (417)
                      |+.+.|.++|+...+..  +.+...|..... -+...|+.+.|..+|+.+... .+.+...|...+..+...|+++.|..
T Consensus       148 ~~~~~ar~i~~~al~~~--~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~  224 (308)
T d2onda1         148 EGIKSGRMIFKKAREDA--RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRV  224 (308)
T ss_dssp             HCHHHHHHHHHHHHTST--TCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             CChHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHH
Confidence            77777777777776522  122233333222 233456777777777777765 23356677777777777888888888


Q ss_pred             HHHHHHHc-CCCCC--HHHHHHHHHHHHHcCCHhHHHHHHHHHHHC
Q 014860          347 NLWEMIEK-QRPVD--FITYRTVLDEICRRGRAGEAMKLLKELQNK  389 (417)
Q Consensus       347 ~~~~m~~~-g~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  389 (417)
                      +|++.... +..|+  ...|...+.--...|+.+.+.++++++.+.
T Consensus       225 ~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         225 LFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88777665 23332  346666666666778888887777776554

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.12  E-value=3e-08  Score=87.31  Aligned_cols=221  Identities=13%  Similarity=0.074  Sum_probs=168.4

Q ss_pred             hhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHH--------------ccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 014860          117 PLVCLELFNWASKQPRFRHDASTYHIMTRKLG--------------AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF  182 (417)
Q Consensus       117 ~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~--------------~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~  182 (417)
                      .+.+..+|+.+....  +.+...|..-+..+-              ..+..++|..+++...+.... .+...|...+..
T Consensus        32 ~~Rv~~vyerAl~~~--~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p-~~~~l~~~ya~~  108 (308)
T d2onda1          32 TKRVMFAYEQCLLVL--GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK-KNMLLYFAYADY  108 (308)
T ss_dssp             HHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCC-CCHHHHHHHHHH
Confidence            345666777765443  345666655554332              233567889999999876543 677888999999


Q ss_pred             HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK  262 (417)
Q Consensus       183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  262 (417)
                      +.+.|+++.|..+|+.+.+.   ........|...+..+.+.|+        .+.|.++|+...+.+. .+...|.....
T Consensus       109 ~~~~~~~~~a~~i~~~~l~~---~~~~~~~~w~~~~~~~~~~~~--------~~~ar~i~~~al~~~~-~~~~~~~~~a~  176 (308)
T d2onda1         109 EESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEG--------IKSGRMIFKKAREDAR-TRHHVYVTAAL  176 (308)
T ss_dssp             HHHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHC--------HHHHHHHHHHHHTSTT-CCTHHHHHHHH
T ss_pred             HHhcccHHHHHHHHHHHHHH---hcCChHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHHhCC-CcHHHHHHHHH
Confidence            99999999999999999875   112235579999999999999        9999999999987753 33444443333


Q ss_pred             -HHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhc
Q 014860          263 -GYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKG-FVPS--SKSYNSLVSALALN  338 (417)
Q Consensus       263 -~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~--~~~~~~li~~~~~~  338 (417)
                       -+...|+.+.|..+|+.+.+.  .+.+...|...+..+.+.|+.+.|..+|++..... ..|+  ...|...+.--...
T Consensus       177 ~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~  254 (308)
T d2onda1         177 MEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI  254 (308)
T ss_dssp             HHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHc
Confidence             244568999999999999873  34567889999999999999999999999988763 3443  56899999988899


Q ss_pred             CCHHHHHHHHHHHHHc
Q 014860          339 GEVEETVKNLWEMIEK  354 (417)
Q Consensus       339 g~~~~A~~~~~~m~~~  354 (417)
                      |+.+.+.++++++.+.
T Consensus       255 G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         255 GDLASILKVEKRRFTA  270 (308)
T ss_dssp             SCHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHH
Confidence            9999999999988775

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.11  E-value=9e-08  Score=85.00  Aligned_cols=273  Identities=12%  Similarity=0.027  Sum_probs=194.4

Q ss_pred             HHHHhccCChhHHHHHHHHhhcCCCCCCC---HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC----HHHHHHHH
Q 014860          108 CNVMTLQEDPLVCLELFNWASKQPRFRHD---ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT----EALYNTII  180 (417)
Q Consensus       108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~~li  180 (417)
                      ...+...|++++|+++++.......-.++   ...+..+...+...|++++|.+.++...+.....++    ...+..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            44567899999999999988654311111   346677788899999999999999988764221122    34566777


Q ss_pred             HHHHHhCCHHHHHHHHHHhHhCC---CCCCCCC-HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC----CCC
Q 014860          181 YFFAEARKLSRAVYVFKYMKNSR---NLECRPS-IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG----IEP  252 (417)
Q Consensus       181 ~~~~~~g~~~~a~~~~~~m~~~~---~~g~~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g----~~p  252 (417)
                      ..+...|+++.+...+.......   .....+. ...+..+...+...|+        ++.+...+.......    ...
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~~  170 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--------LDEAEASARSGIEVLSSYQPQQ  170 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHTTTSCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc--------hhhhHHHHHHHHHHhhhhhhhh
Confidence            88999999999999888765420   0011121 2356667788889999        999999998887532    223


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhC---CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---C
Q 014860          253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVY---NYLP--NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP---S  324 (417)
Q Consensus       253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~  324 (417)
                      ...++......+...++...+...+.......   +..+  ....+..+...+...|++++|...+..........   .
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~  250 (366)
T d1hz4a_         171 QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFL  250 (366)
T ss_dssp             GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGG
T ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHH
Confidence            34556666777888899999888887664421   1111  13345666777889999999999998876543222   2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          325 SKSYNSLVSALALNGEVEETVKNLWEMIEK----QRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                      ...+..+..++...|++++|...+++....    +..|+. .++..+...|.+.|++++|.+.+++..+
T Consensus       251 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         251 QGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            455677888999999999999999987643    444443 4677788899999999999999998654

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=5.7e-08  Score=85.78  Aligned_cols=142  Identities=8%  Similarity=-0.015  Sum_probs=75.8

Q ss_pred             HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHh
Q 014860          108 CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAK-MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEA  186 (417)
Q Consensus       108 l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~  186 (417)
                      ..++.+.+.+++|+++++.+.+..  +-+...|+....++...| ++++|.+.++...+..+  .+..+|+.+...+.+.
T Consensus        50 ~~~~~~~e~~~~Al~~~~~ai~ln--P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p--~~~~a~~~~~~~~~~l  125 (315)
T d2h6fa1          50 RAVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP--KNYQVWHHRRVLVEWL  125 (315)
T ss_dssp             HHHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCchHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH--hhhhHHHHHhHHHHhh
Confidence            334445555666666666655433  334555555555555544 35666666665555443  3455566655666666


Q ss_pred             CCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 014860          187 RKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL  266 (417)
Q Consensus       187 g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~  266 (417)
                      |++++|+..|+.+.+.    -+-+...|..+...+...|+        +++|++.++++.+.. +-+...|+.+...+.+
T Consensus       126 ~~~~eAl~~~~kal~~----dp~n~~a~~~~~~~~~~~~~--------~~~Al~~~~~al~~~-p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         126 RDPSQELEFIADILNQ----DAKNYHAWQHRQWVIQEFKL--------WDNELQYVDQLLKED-VRNNSVWNQRYFVISN  192 (315)
T ss_dssp             TCCTTHHHHHHHHHHH----CTTCHHHHHHHHHHHHHHTC--------CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHhhhhhh----hhcchHHHHHHHHHHHHHHh--------hHHHHHHHHHHHHHC-CccHHHHHHHHHHHHH
Confidence            6666666666666553    12345556666666666665        556666666655543 2234455444443333

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=1.2e-07  Score=83.54  Aligned_cols=254  Identities=7%  Similarity=-0.001  Sum_probs=193.4

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhC-CHHHHHHHHHHhHhCCCCCCCCCHHHHH
Q 014860          137 ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEAR-KLSRAVYVFKYMKNSRNLECRPSIRSYN  215 (417)
Q Consensus       137 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~g~~p~~~~~~  215 (417)
                      ...|+.+-..+.+.+..++|.++++.+++..+  .+...|+....++...| ++++|+..++...+.    -+-+..+|+
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP--~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~----~p~~~~a~~  116 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNA--ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE----QPKNYQVWH  116 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH----CTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCC--CChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH----HHhhhhHHH
Confidence            44555566667788999999999999999865  67888999999988876 599999999999875    244688999


Q ss_pred             HHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHH
Q 014860          216 ILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDY  295 (417)
Q Consensus       216 ~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~  295 (417)
                      .+...+.+.|+        .++|++.++++.+.. +-+...|..+...+.+.|++++|.+.++.+.+. + +.+...|+.
T Consensus       117 ~~~~~~~~l~~--------~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~-~-p~n~~a~~~  185 (315)
T d2h6fa1         117 HRRVLVEWLRD--------PSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE-D-VRNNSVWNQ  185 (315)
T ss_dssp             HHHHHHHHHTC--------CTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH-C-TTCHHHHHH
T ss_pred             HHhHHHHhhcc--------HHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH-C-CccHHHHHH
Confidence            99999999999        999999999999865 456889999999999999999999999999873 2 346778888


Q ss_pred             HHHHHHhcCC------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHH
Q 014860          296 LIHGLCAQGR------TKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQR-PVDFITYRTVLD  368 (417)
Q Consensus       296 li~~~~~~g~------~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li~  368 (417)
                      +...+.+.+.      +++|.+.+....+... -+...|+.+...+... ..+++.+.++...+... ..+...+..+..
T Consensus       186 r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~  263 (315)
T d2h6fa1         186 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVD  263 (315)
T ss_dssp             HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred             HHHHHHHccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence            7777776665      5788888888877642 3677887776665544 45777888887766522 234566777777


Q ss_pred             HHHHc---------CCHhHHHHHHHHHHHCCCC-ChhhHHHHHHHHHhhcC
Q 014860          369 EICRR---------GRAGEAMKLLKELQNKNLI-DGYTYTKLLDVLEDDFG  409 (417)
Q Consensus       369 ~~~~~---------g~~~~A~~~~~~m~~~~~p-~~~t~~~ll~~~~~~~~  409 (417)
                      .|...         +.+++|.+++..+...-=| -..-|+-+.+.+.+.++
T Consensus       264 ~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~~DpiR~~yw~~~~~~l~~~~~  314 (315)
T d2h6fa1         264 IYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSKHS  314 (315)
T ss_dssp             HHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhC
Confidence            77543         3467888888887655323 33447777777766543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.93  E-value=3.5e-08  Score=84.19  Aligned_cols=151  Identities=10%  Similarity=-0.031  Sum_probs=98.5

Q ss_pred             hhHHHHHHHHhhcCCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Q 014860          117 PLVCLELFNWASKQPRFRH--DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVY  194 (417)
Q Consensus       117 ~~~A~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~  194 (417)
                      .+.++.-++.+.......+  ...+|..+...+.+.|++++|.+.|+..++..+  .+..+|+.+..+|.+.|++++|+.
T Consensus        15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p--~~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP--DMPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC--CCHHHHhhhchHHHHHHHHHHhhh
Confidence            4455555555554432222  233555566777788888888888888887654  567788888888888888888888


Q ss_pred             HHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 014860          195 VFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDAL  274 (417)
Q Consensus       195 ~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~  274 (417)
                      .|++..+..    +-+..+|..+...+...|+        +++|.+.|+...+.. +.+......+..++.+.+..+.+.
T Consensus        93 ~~~~al~~~----p~~~~a~~~lg~~~~~~g~--------~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~  159 (259)
T d1xnfa_          93 AFDSVLELD----PTYNYAHLNRGIALYYGGR--------DKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKE  159 (259)
T ss_dssp             HHHHHHHHC----TTCTHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHH
T ss_pred             hhhHHHHHH----hhhhhhHHHHHHHHHHHhh--------HHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHH
Confidence            888887751    2345677777788888888        888888888877654 233444434444455555555555


Q ss_pred             HHHHHhhh
Q 014860          275 RIFHQMGV  282 (417)
Q Consensus       275 ~~~~~m~~  282 (417)
                      .+......
T Consensus       160 ~~~~~~~~  167 (259)
T d1xnfa_         160 VLKQHFEK  167 (259)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHhhc
Confidence            55554443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.88  E-value=8.8e-08  Score=81.64  Aligned_cols=235  Identities=11%  Similarity=-0.037  Sum_probs=156.2

Q ss_pred             ChhHHHHHHHHHHcCCCCCC--CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccc
Q 014860          152 MYQEMDDVVNQMLATPSFCG--TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTY  229 (417)
Q Consensus       152 ~~~~a~~~~~~m~~~~~~~~--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~  229 (417)
                      +.+.+..-+++........+  ...+|..+..+|.+.|++++|+..|++..+..    +-+..+|+.+..++.+.|+   
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~----p~~~~a~~~lg~~~~~~g~---   86 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR----PDMPEVFNYLGIYLTQAGN---   86 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC----CCCHHHHhhhchHHHHHHH---
Confidence            34455555666665543211  24577788899999999999999999999852    4468899999999999999   


Q ss_pred             hhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860          230 INHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNA  309 (417)
Q Consensus       230 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A  309 (417)
                           +++|++.|++..+.. +-+..++..+..+|...|++++|.+.|+...+..  +.+......+..++.+.+..+.+
T Consensus        87 -----~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~  158 (259)
T d1xnfa_          87 -----FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAK  158 (259)
T ss_dssp             -----HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHH
T ss_pred             -----HHHhhhhhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc--cccHHHHHHHHHHHHHhhhHHHH
Confidence                 999999999999865 3356788888899999999999999999887632  23444444455556666666666


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHhHHHHHHH
Q 014860          310 RELCDEMKRKGFVPSSKSYNSLVSALALNGE----VEETVKNLWEMIEKQRPVD-FITYRTVLDEICRRGRAGEAMKLLK  384 (417)
Q Consensus       310 ~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~----~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~  384 (417)
                      ..+..........+  ..++ ++..+.....    .+.+...+.....  ..|+ ..+|..+...|...|++++|.+.|+
T Consensus       159 ~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~  233 (259)
T d1xnfa_         159 EVLKQHFEKSDKEQ--WGWN-IVEFYLGNISEQTLMERLKADATDNTS--LAEHLSETNFYLGKYYLSLGDLDSATALFK  233 (259)
T ss_dssp             HHHHHHHHHSCCCS--THHH-HHHHHTTSSCHHHHHHHHHHHCCSHHH--HHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHhhccchhh--hhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhh--cCcccHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            66666665543222  1222 2222222222    2222222211111  1122 2366678889999999999999999


Q ss_pred             HHHHCCCCChhhHHHHHHHHHh
Q 014860          385 ELQNKNLIDGYTYTKLLDVLED  406 (417)
Q Consensus       385 ~m~~~~~p~~~t~~~ll~~~~~  406 (417)
                      .....+..+...|..-+..|.+
T Consensus       234 ~al~~~p~~~~~~~~a~~~L~~  255 (259)
T d1xnfa_         234 LAVANNVHNFVEHRYALLELSL  255 (259)
T ss_dssp             HHHTTCCTTCHHHHHHHHHHHH
T ss_pred             HHHHcCCCCHHHHHHHHHHHHH
Confidence            9988765455555544444443

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.78  E-value=9.1e-06  Score=71.48  Aligned_cols=287  Identities=11%  Similarity=0.052  Sum_probs=194.5

Q ss_pred             ChhHHHHHHhcCCCCC------CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCC----CHHHHHHHHHHHHccCChhHH
Q 014860           87 DDTQFRCAVSELPPRF------NNEELCNVMTLQEDPLVCLELFNWASKQPRFRH----DASTYHIMTRKLGAAKMYQEM  156 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~~------~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a  156 (417)
                      +...+.+.+...|+..      .+..+..++...|++++|+..|+.+.+...-.+    ....+..+...+...|++..+
T Consensus        31 A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  110 (366)
T d1hz4a_          31 AERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTA  110 (366)
T ss_dssp             HHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445667777776653      244456677889999999999998754211112    234556666778899999999


Q ss_pred             HHHHHHHHcC----CCCC-C-CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCC-CCCCCCHHHHHHHHHHHHhcCCccc
Q 014860          157 DDVVNQMLAT----PSFC-G-TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRN-LECRPSIRSYNILFTAFLSRGKNTY  229 (417)
Q Consensus       157 ~~~~~~m~~~----~~~~-~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~g~~p~~~~~~~li~~~~~~g~~~~  229 (417)
                      ...+......    +... + ....+..+...+...|+++.+...+........ .+......++..+...+...++   
T Consensus       111 ~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  187 (366)
T d1hz4a_         111 WETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGD---  187 (366)
T ss_dssp             HHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTC---
T ss_pred             HHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhhh---
Confidence            9988876642    1110 1 224566677889999999999999998876421 1223345667777778888888   


Q ss_pred             hhhhhHHHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCC--CCCHHHHHHHHHHHH
Q 014860          230 INHVYMETIRCLFKQMVND----GIEP--DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNY--LPNSFSYDYLIHGLC  301 (417)
Q Consensus       230 ~~~~~~~~a~~~~~~m~~~----g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--~~~~~~~~~li~~~~  301 (417)
                           ...+...+.+....    +..+  ....+..+...+...|+++.|...+........-  ......+..+...+.
T Consensus       188 -----~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  262 (366)
T d1hz4a_         188 -----LDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI  262 (366)
T ss_dssp             -----HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence                 88888887765531    1111  1234566677788999999999999987652111  123456677888999


Q ss_pred             hcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC----CHHHHHHHHH
Q 014860          302 AQGRTKNARELCDEMKR----KGFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIEK----QRPV----DFITYRTVLD  368 (417)
Q Consensus       302 ~~g~~~~A~~l~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~p----~~~~~~~li~  368 (417)
                      ..|++++|...+++...    .+..|+ ..++..+-.+|...|++++|.+.+++..+.    |...    .......++.
T Consensus       263 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~  342 (366)
T d1hz4a_         263 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLR  342 (366)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHH
Confidence            99999999999988763    344444 456788889999999999999999987653    3211    1223444555


Q ss_pred             HHHHcCCHhHHHH
Q 014860          369 EICRRGRAGEAMK  381 (417)
Q Consensus       369 ~~~~~g~~~~A~~  381 (417)
                      .+...++.+++.+
T Consensus       343 ~l~~~~~l~e~e~  355 (366)
T d1hz4a_         343 QLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHTTCSCHHHH
T ss_pred             HHHhcCCChHHHH
Confidence            5666666666544

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.73  E-value=5.3e-08  Score=86.69  Aligned_cols=273  Identities=9%  Similarity=-0.029  Sum_probs=190.3

Q ss_pred             HHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHH---HHHH-------ccCChhHHHHHHHHHHcCCCCCCCHHHH
Q 014860          107 LCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMT---RKLG-------AAKMYQEMDDVVNQMLATPSFCGTEALY  176 (417)
Q Consensus       107 ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li---~~~~-------~~~~~~~a~~~~~~m~~~~~~~~~~~~~  176 (417)
                      ++......+..++|+++++.+.+..  +-+...|+..-   ..+.       ..|.+++|...++...+..+  .+...|
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~~--P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~p--k~~~~~  110 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP--KSYGTW  110 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCC--CcHHHH
Confidence            3333445555789999999987543  23444454322   2222       34557889999999888764  577788


Q ss_pred             HHHHHHHHHhCC--HHHHHHHHHHhHhCCCCCCCCCHHHHHHHH-HHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCC
Q 014860          177 NTIIYFFAEARK--LSRAVYVFKYMKNSRNLECRPSIRSYNILF-TAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPD  253 (417)
Q Consensus       177 ~~li~~~~~~g~--~~~a~~~~~~m~~~~~~g~~p~~~~~~~li-~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~  253 (417)
                      ..+..++...+.  +++|+..+..+.+.    -+++...|...+ ..+...+.        .++|++.++...+.. +-+
T Consensus       111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~----~~~~~~~~~~~~~~~~~~~~~--------~~~Al~~~~~~i~~~-p~~  177 (334)
T d1dcea1         111 HHRCWLLSRLPEPNWARELELCARFLEA----DERNFHCWDYRRFVAAQAAVA--------PAEELAFTDSLITRN-FSN  177 (334)
T ss_dssp             HHHHHHHHTCSSCCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTCCC--------HHHHHHHHHTTTTTT-CCC
T ss_pred             HHhhHHHHHhccccHHHHHHHHHHHHhh----CchhhhhhhhHHHHHHHhccc--------cHHHHHHHHHHHHcC-CCC
Confidence            888777777654  89999999999875    244566665544 56667788        999999999988776 456


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          254 IFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVS  333 (417)
Q Consensus       254 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~  333 (417)
                      ...|+.+-..+.+.|++++|...+......   .|+   ...+...+...+..+++...+....... .++...+..+..
T Consensus       178 ~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~  250 (334)
T d1dcea1         178 YSSWHYRSCLLPQLHPQPDSGPQGRLPENV---LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVE  250 (334)
T ss_dssp             HHHHHHHHHHHHHHSCCCCSSSCCSSCHHH---HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHh---HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHH
Confidence            788999999999999988876665544431   111   1223344566677778888888777653 234556677777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHH
Q 014860          334 ALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVL  404 (417)
Q Consensus       334 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~  404 (417)
                      .+...|+.++|...+.+..... +-+..+|..+...|.+.|+.++|.+.+++..+.+.....-|+.+-..+
T Consensus       251 ~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L~~~~  320 (334)
T d1dcea1         251 KSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKF  320 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence            8888899999999998877652 223456777888899999999999999999887533444555454333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.40  E-value=1.2e-05  Score=69.55  Aligned_cols=206  Identities=9%  Similarity=0.028  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHhCCHHHHHHHHHHhHhCC-CCCCCC-CHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH----CC
Q 014860          176 YNTIIYFFAEARKLSRAVYVFKYMKNSR-NLECRP-SIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN----DG  249 (417)
Q Consensus       176 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~g~~p-~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~----~g  249 (417)
                      |......|...|++++|.+.|.+..+.. ..+-++ -..+|+.+..+|.+.|+        +++|.+.+++..+    .|
T Consensus        40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~--------~~~A~~~~~~a~~~~~~~~  111 (290)
T d1qqea_          40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN--------SVNAVDSLENAIQIFTHRG  111 (290)
T ss_dssp             HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC--------cHHHHHHHHHhhHHhhhcc
Confidence            4444667888888999888888776520 001112 24578888889999999        8888888887654    22


Q ss_pred             C-CCCHHHHHHHHHHHHh-cCCHHHHHHHHHHhhhh---CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014860          250 I-EPDIFSLNSMIKGYIL-SNHVNDALRIFHQMGVV---YNYLP-NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP  323 (417)
Q Consensus       250 ~-~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~---~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  323 (417)
                      . .....++..+...|-. .|++++|.+.+++..+.   .+-.+ -..++..+...+...|++++|...|++........
T Consensus       112 ~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~  191 (290)
T d1qqea_         112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGN  191 (290)
T ss_dssp             CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSC
T ss_pred             cchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccc
Confidence            1 1113455566666644 69999999999877531   11111 24567888999999999999999999988653221


Q ss_pred             -----CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHH--cCCHhHHHHHHHHHHHC
Q 014860          324 -----SS-KSYNSLVSALALNGEVEETVKNLWEMIEKQRP-VD---FITYRTVLDEICR--RGRAGEAMKLLKELQNK  389 (417)
Q Consensus       324 -----~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~-p~---~~~~~~li~~~~~--~g~~~~A~~~~~~m~~~  389 (417)
                           .. ..+...+..+...|+.+.|...+++..+.... ++   ......++.++-.  .+.+++|..-|+++.+.
T Consensus       192 ~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~l  269 (290)
T d1qqea_         192 RLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRL  269 (290)
T ss_dssp             TTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCC
T ss_pred             hhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence                 11 22344555777889999999999988765211 11   2344566666655  34578888887655543

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=1.5e-05  Score=64.25  Aligned_cols=139  Identities=9%  Similarity=-0.063  Sum_probs=109.4

Q ss_pred             HHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 014860          263 GYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVE  342 (417)
Q Consensus       263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  342 (417)
                      .+...|+++.|.+.|.++..     ++..+|..+-..|...|++++|++.|++..+.... +...|..+-.+|.+.|+++
T Consensus        14 ~~~~~~d~~~Al~~~~~i~~-----~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          14 LAADKKDWKGALDAFSAVQD-----PHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHTTCHHHHHHHHHTSSS-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHCCCHHHHHHHHHhcCC-----CCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHH
Confidence            46778999999999987643     77888999999999999999999999999886433 6788999999999999999


Q ss_pred             HHHHHHHHHHHc------------CCC--CC-HHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC-CChhhHHHHHHHHHh
Q 014860          343 ETVKNLWEMIEK------------QRP--VD-FITYRTVLDEICRRGRAGEAMKLLKELQNKNL-IDGYTYTKLLDVLED  406 (417)
Q Consensus       343 ~A~~~~~~m~~~------------g~~--p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~-p~~~t~~~ll~~~~~  406 (417)
                      +|.+.|++....            |..  .+ ..++..+..++.+.|++++|.+.+....+... +........+..+.+
T Consensus        88 ~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~~~~~~~Al~~~~~  167 (192)
T d1hh8a_          88 LAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDKAMECVWK  167 (192)
T ss_dssp             HHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHh
Confidence            999999998753            111  11 24566677789999999999999999888765 444455555555544


Q ss_pred             h
Q 014860          407 D  407 (417)
Q Consensus       407 ~  407 (417)
                      .
T Consensus       168 ~  168 (192)
T d1hh8a_         168 Q  168 (192)
T ss_dssp             T
T ss_pred             h
Confidence            3

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=2.3e-05  Score=63.09  Aligned_cols=129  Identities=9%  Similarity=0.004  Sum_probs=103.3

Q ss_pred             HHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Q 014860          109 NVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARK  188 (417)
Q Consensus       109 ~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~  188 (417)
                      ..+...|+++.|++.|..+.     +++..+|..+..++...|++++|.+.|++.++...  .+...|..+..+|.+.|+
T Consensus        13 ~~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp--~~~~a~~~~g~~~~~~g~   85 (192)
T d1hh8a_          13 VLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDK--HLAVAYFQRGMLYYQTEK   85 (192)
T ss_dssp             HHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhh--hhhhhHHHHHHHHHhhcc
Confidence            34467899999999998652     56888999999999999999999999999999875  678899999999999999


Q ss_pred             HHHHHHHHHHhHhCCC---------CCC--CCC-HHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCC
Q 014860          189 LSRAVYVFKYMKNSRN---------LEC--RPS-IRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEP  252 (417)
Q Consensus       189 ~~~a~~~~~~m~~~~~---------~g~--~p~-~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p  252 (417)
                      +++|++.|++......         .|.  ..+ ..++..+-.++...|+        +++|.+.|....+....+
T Consensus        86 ~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~--------~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          86 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--------WKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHhcCCCc
Confidence            9999999998765310         011  111 3556677778889999        999999998887765443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.34  E-value=2.8e-05  Score=66.98  Aligned_cols=203  Identities=10%  Similarity=-0.082  Sum_probs=136.7

Q ss_pred             HHHHHHccCChhHHHHHHHHHHcCC----CCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCC-CCC-CCCCHHHHHH
Q 014860          143 MTRKLGAAKMYQEMDDVVNQMLATP----SFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSR-NLE-CRPSIRSYNI  216 (417)
Q Consensus       143 li~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~g-~~p~~~~~~~  216 (417)
                      ....|...|++++|.+.|.+..+..    ....-..+|..+..+|.+.|++++|+..++...+.. ..| ......++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            3457888999999999998887642    111224688999999999999999999999765430 001 1112455666


Q ss_pred             HHHHHHh-cCCccchhhhhHHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC--
Q 014860          217 LFTAFLS-RGKNTYINHVYMETIRCLFKQMVN----DGIEP-DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLP--  288 (417)
Q Consensus       217 li~~~~~-~g~~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~--  288 (417)
                      +...|.. .|+        +++|.+.|++..+    .+..+ -..++..+...|...|++++|...|++......-.+  
T Consensus       123 l~~~~~~~~~~--------~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~  194 (290)
T d1qqea_         123 LGEILENDLHD--------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLS  194 (290)
T ss_dssp             HHHHHHHTTCC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTT
T ss_pred             HHHhHhhHHHH--------HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhh
Confidence            7667744 588        9999999988753    22222 134678889999999999999999999866221111  


Q ss_pred             --CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 014860          289 --NS-FSYDYLIHGLCAQGRTKNARELCDEMKRKGFV-PS---SKSYNSLVSALAL--NGEVEETVKNLWEMIE  353 (417)
Q Consensus       289 --~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~---~~~~~~li~~~~~--~g~~~~A~~~~~~m~~  353 (417)
                        .. ..+..++..+...|+++.|...+++..+.... ++   ......++.++-.  .+.+++|+..|+.+.+
T Consensus       195 ~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         195 QWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             hhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence              11 22344555677889999999999998765311 12   2345667777665  3457888888865543

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=3.9e-05  Score=56.11  Aligned_cols=92  Identities=14%  Similarity=0.081  Sum_probs=61.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 014860          297 IHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRA  376 (417)
Q Consensus       297 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  376 (417)
                      -..+.+.|++++|+..|++..+.. +-+...|..+-.+|...|++++|+..+.+..+.. +.+...|..+..++...|++
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~   87 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRF   87 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCH
Confidence            344666677777777777766553 2256667777777777777777777777776652 34566677777777777777


Q ss_pred             hHHHHHHHHHHHCC
Q 014860          377 GEAMKLLKELQNKN  390 (417)
Q Consensus       377 ~~A~~~~~~m~~~~  390 (417)
                      ++|+..|++..+..
T Consensus        88 ~~A~~~~~~a~~~~  101 (117)
T d1elwa_          88 EEAKRTYEEGLKHE  101 (117)
T ss_dssp             HHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhC
Confidence            77777777777654

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.15  E-value=1e-05  Score=71.38  Aligned_cols=244  Identities=11%  Similarity=0.012  Sum_probs=167.4

Q ss_pred             HHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH----------HHHhCCHHHHHHHHHHhHhCCCCCCCCCHH
Q 014860          143 MTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF----------FAEARKLSRAVYVFKYMKNSRNLECRPSIR  212 (417)
Q Consensus       143 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~----------~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~  212 (417)
                      ++......+..++|.++++...+..+  .+...|+..-..          +...|.+++|+.+++...+.    .+-+..
T Consensus        35 ~~~~~~~~~~~~~al~~~~~~l~~~P--~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~----~pk~~~  108 (334)
T d1dcea1          35 VFQKRQAGELDESVLELTSQILGANP--DFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV----NPKSYG  108 (334)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH----CTTCHH
T ss_pred             HHHHHhcccccHHHHHHHHHHHHHCC--CcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh----CCCcHH
Confidence            33333344456899999999987653  345555443333          33345588999999998875    244677


Q ss_pred             HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHH-HHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHH
Q 014860          213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNS-MIKGYILSNHVNDALRIFHQMGVVYNYLPNSF  291 (417)
Q Consensus       213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~  291 (417)
                      .|..+..++...++..      .++|...+..+.+.. +.+...+.. .-..+...+.++.|...++...+. + +-+..
T Consensus       109 ~~~~~~~~~~~~~~~~------~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~-~-p~~~~  179 (334)
T d1dcea1         109 TWHHRCWLLSRLPEPN------WARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR-N-FSNYS  179 (334)
T ss_dssp             HHHHHHHHHHTCSSCC------HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTT-T-CCCHH
T ss_pred             HHHHhhHHHHHhcccc------HHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHc-C-CCCHH
Confidence            8888888877766421      789999999988764 345555544 446777889999999999988762 2 35788


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 014860          292 SYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEIC  371 (417)
Q Consensus       292 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  371 (417)
                      .|+.+...+.+.|++++|...+......  .|+   ...+...+...+..+++...+....... +++...+..+...+.
T Consensus       180 a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~  253 (334)
T d1dcea1         180 SWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKST  253 (334)
T ss_dssp             HHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHH
Confidence            8999999999999988876555443332  111   1223344566677778888888777652 344556677778888


Q ss_pred             HcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          372 RRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       372 ~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                      ..|+.++|...+.+....+.-+...|..+-.++.+.
T Consensus       254 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~  289 (334)
T d1dcea1         254 VLQSELESCKELQELEPENKWCLLTIILLMRALDPL  289 (334)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTG
T ss_pred             HHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHC
Confidence            899999999999988877643555666666665443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.13  E-value=0.0016  Score=54.56  Aligned_cols=225  Identities=10%  Similarity=-0.009  Sum_probs=148.4

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH----hCCHHHHHHHHHHhHhCCCCCCCCCH
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE----ARKLSRAVYVFKYMKNSRNLECRPSI  211 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~g~~p~~  211 (417)
                      |+..+..+...+-+.+++++|.+.|+...+.+    +...+..|...|..    ..+...|...+......+      +.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~------~~   70 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN------YS   70 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT------CH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc------cc
Confidence            45566666666777888888888888887764    44556666666665    567888888888877752      44


Q ss_pred             HHHHHHHHHHHh----cCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHhhhh
Q 014860          212 RSYNILFTAFLS----RGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYI----LSNHVNDALRIFHQMGVV  283 (417)
Q Consensus       212 ~~~~~li~~~~~----~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~----~~g~~~~a~~~~~~m~~~  283 (417)
                      .....+...+..    ..+        .+.|...++...+.|..   .....+...+.    .......+...+..... 
T Consensus        71 ~a~~~l~~~~~~~~~~~~~--------~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~-  138 (265)
T d1ouva_          71 NGCHLLGNLYYSGQGVSQN--------TNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD-  138 (265)
T ss_dssp             HHHHHHHHHHHHTSSSCCC--------HHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH-
T ss_pred             chhhccccccccccccchh--------hHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc-
Confidence            444444444433    233        77888888887776632   22222222222    23456666777766655 


Q ss_pred             CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcC
Q 014860          284 YNYLPNSFSYDYLIHGLCA----QGRTKNARELCDEMKRKGFVPSSKSYNSLVSALAL----NGEVEETVKNLWEMIEKQ  355 (417)
Q Consensus       284 ~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  355 (417)
                         ..+...+..|...|..    ..+...+..+++...+.|   +......|-..|..    ..+.++|..+|.+..+.|
T Consensus       139 ---~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g  212 (265)
T d1ouva_         139 ---LNDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE  212 (265)
T ss_dssp             ---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT
T ss_pred             ---ccccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc
Confidence               2566677777777765    345667777777777765   55566556555554    568999999999988876


Q ss_pred             CCCCHHHHHHHHHHHHH----cCCHhHHHHHHHHHHHCCC
Q 014860          356 RPVDFITYRTVLDEICR----RGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       356 ~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~  391 (417)
                         +...+..|...|.+    ..+.++|.+.|++-.+.|.
T Consensus       213 ---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         213 ---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             ---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             ---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence               56666667666654    3478889999999888874

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=7.3e-05  Score=57.89  Aligned_cols=91  Identities=12%  Similarity=0.063  Sum_probs=61.0

Q ss_pred             HHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHh
Q 014860          144 TRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS  223 (417)
Q Consensus       144 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~  223 (417)
                      ...+.+.|++++|...|+...+..+  .+...|..+..+|...|++++|+..|+...+.    -+-+..+|..+..++..
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p--~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~----~p~~~~a~~~~g~~~~~   90 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNP--SNAIYYGNRSLAYLRTECYGYALGDATRAIEL----DKKYIKGYYRRAASNMA   90 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHST--TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccch--hhhhhhhhhHHHHHhccccchHHHHHHHHHHH----cccchHHHHHHHHHHHH
Confidence            3455667777777777777766654  46666777777777777777777777777664    13345667777777777


Q ss_pred             cCCccchhhhhHHHHHHHHHHHHHC
Q 014860          224 RGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       224 ~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      .|+        +++|...+++....
T Consensus        91 ~g~--------~~eA~~~~~~a~~~  107 (159)
T d1a17a_          91 LGK--------FRAALRDYETVVKV  107 (159)
T ss_dssp             TTC--------HHHHHHHHHHHHHH
T ss_pred             cCC--------HHHHHHHHHHHHHc
Confidence            777        77777777776654

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=7.1e-05  Score=57.96  Aligned_cols=91  Identities=10%  Similarity=-0.018  Sum_probs=68.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          179 IIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLN  258 (417)
Q Consensus       179 li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~  258 (417)
                      ....|.+.|++++|+..|++..+.    -+-+...|..+...|...|+        +++|...|+...+.. +-+..+|.
T Consensus        16 ~gn~~~~~~~y~~A~~~~~~al~~----~p~~~~~~~~lg~~~~~~~~--------~~~A~~~~~kal~~~-p~~~~a~~   82 (159)
T d1a17a_          16 QANDYFKAKDYENAIKFYSQAIEL----NPSNAIYYGNRSLAYLRTEC--------YGYALGDATRAIELD-KKYIKGYY   82 (159)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHhhhcccc----chhhhhhhhhhHHHHHhccc--------cchHHHHHHHHHHHc-ccchHHHH
Confidence            345677888888888888888775    14457778888888888888        888888888877664 34557777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHhhh
Q 014860          259 SMIKGYILSNHVNDALRIFHQMGV  282 (417)
Q Consensus       259 ~li~~~~~~g~~~~a~~~~~~m~~  282 (417)
                      .+..+|...|++++|.+.+++...
T Consensus        83 ~~g~~~~~~g~~~eA~~~~~~a~~  106 (159)
T d1a17a_          83 RRAASNMALGKFRAALRDYETVVK  106 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Confidence            788888888888888888887766

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.10  E-value=3.4e-05  Score=62.18  Aligned_cols=99  Identities=9%  Similarity=0.065  Sum_probs=84.7

Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCC-CHH
Q 014860          134 RHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRP-SIR  212 (417)
Q Consensus       134 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p-~~~  212 (417)
                      .|+...+......+.+.|++++|...|...++..+  .+...|+.+..+|.+.|++++|+..|+...+.     .| +..
T Consensus         1 ~~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p--~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l-----~p~~~~   73 (201)
T d2c2la1           1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP--LVAVYYTNRALCYLKMQQPEQALADCRRALEL-----DGQSVK   73 (201)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-----CTTCHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC--CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh-----CCCcHH
Confidence            36777778888889999999999999998887764  67888999999999999999999999999875     44 577


Q ss_pred             HHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHH
Q 014860          213 SYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVN  247 (417)
Q Consensus       213 ~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~  247 (417)
                      +|..+..+|...|+        +++|+..|++..+
T Consensus        74 a~~~lg~~~~~l~~--------~~~A~~~~~~al~  100 (201)
T d2c2la1          74 AHFFLGQCQLEMES--------YDEAIANLQRAYS  100 (201)
T ss_dssp             HHHHHHHHHHHTTC--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCC--------HHHHHHHHHHHHH
Confidence            89999999999999        9999999988764

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=0.00013  Score=53.21  Aligned_cols=91  Identities=9%  Similarity=0.014  Sum_probs=64.3

Q ss_pred             HHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHh
Q 014860          144 TRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLS  223 (417)
Q Consensus       144 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~  223 (417)
                      ...+...|++++|...|+..++..+  .+...|..+..+|.+.|++++|+..++...+..    +.+...|..+..++..
T Consensus        10 g~~~~~~g~~~eAi~~~~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~----p~~~~~~~~~g~~~~~   83 (117)
T d1elwa_          10 GNKALSVGNIDDALQCYSEAIKLDP--HNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK----PDWGKGYSRKAAALEF   83 (117)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhcCC--cchhhhhcccccccccccccccchhhhhHHHhc----cchhhHHHHHHHHHHH
Confidence            3456677777777777777776654  566677777777777777777777777777642    4466677777777777


Q ss_pred             cCCccchhhhhHHHHHHHHHHHHHC
Q 014860          224 RGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       224 ~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      .|+        +++|+..|++..+.
T Consensus        84 ~~~--------~~~A~~~~~~a~~~  100 (117)
T d1elwa_          84 LNR--------FEEAKRTYEEGLKH  100 (117)
T ss_dssp             TTC--------HHHHHHHHHHHHTT
T ss_pred             ccC--------HHHHHHHHHHHHHh
Confidence            777        77777777777754

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.07  E-value=4.8e-05  Score=61.25  Aligned_cols=99  Identities=12%  Similarity=-0.009  Sum_probs=83.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHH
Q 014860          252 PDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP-SSKSYNS  330 (417)
Q Consensus       252 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~~~~~  330 (417)
                      |+...+...-..|.+.|++++|...|....+..  +.+...|..+..+|.+.|++++|+..|+...+.  .| +..+|..
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~--p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l--~p~~~~a~~~   77 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFF   77 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--CTTCHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHh--CCCcHHHHHH
Confidence            667777778888999999999999998876622  457888999999999999999999999998865  34 5788999


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          331 LVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       331 li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      +..+|...|++++|+..|++..+.
T Consensus        78 lg~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          78 LGQCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh
Confidence            999999999999999999987763

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.93  E-value=4.7e-05  Score=55.16  Aligned_cols=91  Identities=7%  Similarity=-0.071  Sum_probs=80.4

Q ss_pred             HHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Q 014860          106 ELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAE  185 (417)
Q Consensus       106 ~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~  185 (417)
                      .....+.+.|++++|+..|+.+.+..  +-+...|..+..++.+.|++++|...++...+..+  .+...+..+...|..
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p--~~~~a~~~la~~y~~   96 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKE--PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP--KDIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccc--cccchhhhhhhhhhhhhhhHHHhhccccccccccc--ccccchHHHHHHHHH
Confidence            34556678999999999999987655  45799999999999999999999999999998775  678999999999999


Q ss_pred             hCCHHHHHHHHHHhH
Q 014860          186 ARKLSRAVYVFKYMK  200 (417)
Q Consensus       186 ~g~~~~a~~~~~~m~  200 (417)
                      .|++++|++.|++..
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998753

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=97.91  E-value=9.4e-05  Score=53.49  Aligned_cols=88  Identities=14%  Similarity=0.015  Sum_probs=59.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 014860          297 IHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRA  376 (417)
Q Consensus       297 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  376 (417)
                      ...+.+.|++++|...|++....... +...|..+..++.+.|++++|...|++..+. .+-+...|..+...|...|+.
T Consensus        23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~-~p~~~~a~~~la~~y~~~g~~  100 (112)
T d1hxia_          23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSHTNEHNA  100 (112)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccc-ccccccchHHHHHHHHHCCCH
Confidence            44566677777777777777665322 5667777777777777777777777776664 233456677777777777777


Q ss_pred             hHHHHHHHHH
Q 014860          377 GEAMKLLKEL  386 (417)
Q Consensus       377 ~~A~~~~~~m  386 (417)
                      ++|.+.|++.
T Consensus       101 ~~A~~~l~~~  110 (112)
T d1hxia_         101 NAALASLRAW  110 (112)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777664

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=4e-05  Score=56.44  Aligned_cols=95  Identities=13%  Similarity=0.022  Sum_probs=54.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHHcCCCCCH-HHHHHHHHHH
Q 014860          295 YLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGE---VEETVKNLWEMIEKQRPVDF-ITYRTVLDEI  370 (417)
Q Consensus       295 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~  370 (417)
                      .+++.+...+++++|++.|+.....+. .+..++..+..++.+.++   +++|..+|+++....-.|+. .+|..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p-~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            455566666666666666666665432 255566666666655443   33466666666554222221 2455566666


Q ss_pred             HHcCCHhHHHHHHHHHHHCC
Q 014860          371 CRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       371 ~~~g~~~~A~~~~~~m~~~~  390 (417)
                      .+.|++++|.+.|++..+..
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~  102 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTE  102 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhhhHHHHHHHHHHHHhC
Confidence            66666666666666666644

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=9.7e-05  Score=54.30  Aligned_cols=95  Identities=13%  Similarity=0.004  Sum_probs=78.7

Q ss_pred             HHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHHcCCCCCCC-HHHHHHHH
Q 014860          105 EELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAK---MYQEMDDVVNQMLATPSFCGT-EALYNTII  180 (417)
Q Consensus       105 ~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~-~~~~~~li  180 (417)
                      +.++..+...+++++|.+.|+...+..  +.+..++..+..++.+.+   ++++|..+++.+...... ++ ..++..+.
T Consensus         3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~--p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~-~~~~~~~~~Lg   79 (122)
T d1nzna_           3 EAVLNELVSVEDLLKFEKKFQSEKAAG--SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSK-EEQRDYVFYLA   79 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCH-HHHHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCC-chHHHHHHHHH
Confidence            456778888899999999999998755  678899999999987654   555799999999886643 22 34788899


Q ss_pred             HHHHHhCCHHHHHHHHHHhHhC
Q 014860          181 YFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       181 ~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      .+|.+.|++++|++.|+++.+.
T Consensus        80 ~~y~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          80 VGNYRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHh
Confidence            9999999999999999999986

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.0028  Score=49.19  Aligned_cols=96  Identities=13%  Similarity=0.024  Sum_probs=68.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCC-------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014860          258 NSMIKGYILSNHVNDALRIFHQMGVVYNYLPN-------------SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS  324 (417)
Q Consensus       258 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~-------------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  324 (417)
                      ...-..+.+.|++++|...|..........+.             ..+|+.+..+|.+.|++++|+..+++...... -+
T Consensus        17 ~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~p-~~   95 (170)
T d1p5qa1          17 KERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS-NN   95 (170)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhccc-cc
Confidence            34445678889999999999877552221111             24566677778888888888888888777532 26


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          325 SKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      ..+|..+..+|...|++++|...|++..+.
T Consensus        96 ~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  125 (170)
T d1p5qa1          96 EKGLSRRGEAHLAVNDFELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence            777888888888888888888888887775

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.60  E-value=0.00088  Score=52.65  Aligned_cols=71  Identities=10%  Similarity=0.040  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHH-----HC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMV-----ND  248 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~-----~~  248 (417)
                      ..+..+...+.+.|++++|+..++.+.+.    -+-+...|..++.++...|+        .++|++.|+++.     +.
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~----~P~~e~~~~~l~~al~~~Gr--------~~eAl~~y~~~~~~L~~eL  135 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFE----HPYREPLWTQLITAYYLSDR--------QSDALGAYRRVKTTLADDL  135 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----STTCHHHHHHHHHHHHTTTC--------HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHh----CCccHHHHHHHHHHHHHhcC--------HHHHHHHHHHHHHHHHHHh
Confidence            56788999999999999999999999986    25578899999999999999        999999999875     36


Q ss_pred             CCCCCHHH
Q 014860          249 GIEPDIFS  256 (417)
Q Consensus       249 g~~p~~~~  256 (417)
                      |+.|...+
T Consensus       136 G~~P~~~l  143 (179)
T d2ff4a2         136 GIDPGPTL  143 (179)
T ss_dssp             SCCCCHHH
T ss_pred             CCCcCHHH
Confidence            88888765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.57  E-value=0.0011  Score=52.01  Aligned_cols=60  Identities=15%  Similarity=0.182  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHh
Q 014860          212 RSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQM  280 (417)
Q Consensus       212 ~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  280 (417)
                      ..+..+...+...|+        +++|+..++++.+.. +-+...|..++.+|.+.|+.++|.+.|+++
T Consensus        68 ~a~~~la~~~~~~g~--------~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          68 LAHTAKAEAEIACGR--------ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCC--------chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            345555555555665        566666665555543 345555555666666666666665555554

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.54  E-value=0.0038  Score=47.41  Aligned_cols=72  Identities=10%  Similarity=-0.041  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHH
Q 014860          326 KSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYT  398 (417)
Q Consensus       326 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~  398 (417)
                      .+|+.+..+|.+.|++++|++.+++..+.. +.+..+|..+..++...|++++|...|++..+.+.-+.....
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~  139 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRN  139 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            366778888888999999999998888762 457788888888999999999999999888876533444433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.0027  Score=49.25  Aligned_cols=63  Identities=13%  Similarity=0.041  Sum_probs=44.1

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      .+|+.+..+|.+.|++++|+..++...+..    +.+..+|..+..++...|+        +++|...|++..+.
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~----p~~~~a~~~~g~~~~~~g~--------~~~A~~~~~~al~l  125 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELD----SNNEKGLSRRGEAHLAVND--------FELARADFQKVLQL  125 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----TTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcc----ccchhhhHHHHHHHHHhhh--------HHHHHHHHHHHHHh
Confidence            355666677777777777777777777641    3356677777777777777        77777777777665

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.52  E-value=0.017  Score=47.77  Aligned_cols=223  Identities=8%  Similarity=-0.064  Sum_probs=152.3

Q ss_pred             HHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860          106 ELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGA----AKMYQEMDDVVNQMLATPSFCGTEALYNTIIY  181 (417)
Q Consensus       106 ~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  181 (417)
                      .|...+-..++..+|++.|+...+..    +...+-.|-..+..    ..+...+...+....+.+.    ......+..
T Consensus         7 ~lG~~~~~~~d~~~A~~~~~kAa~~g----~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~----~~a~~~l~~   78 (265)
T d1ouva_           7 GLGAKSYKEKDFTQAKKYFEKACDLK----ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNY----SNGCHLLGN   78 (265)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC----HHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccc----cchhhcccc
Confidence            34455567899999999999996443    66666667666664    6688999999998887653    345555555


Q ss_pred             HHHH----hCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 014860          182 FFAE----ARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL  257 (417)
Q Consensus       182 ~~~~----~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  257 (417)
                      .+..    ..+.+.|...++...+.   |   .......+...+......    ......+...+......   .+...+
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~~---g---~~~a~~~l~~~~~~~~~~----~~~~~~a~~~~~~~~~~---~~~~~~  145 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACDL---K---YAEGCASLGGIYHDGKVV----TRDFKKAVEYFTKACDL---NDGDGC  145 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHT---T---CHHHHHHHHHHHHHCSSS----CCCHHHHHHHHHHHHHT---TCHHHH
T ss_pred             ccccccccchhhHHHHHHHhhhhhh---h---hhhHHHhhcccccCCCcc----cchhHHHHHHhhhhhcc---cccchh
Confidence            5544    46788999999998876   2   233333333333321110    00167778888777764   456677


Q ss_pred             HHHHHHHHh----cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 014860          258 NSMIKGYIL----SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNARELCDEMKRKGFVPSSKSYN  329 (417)
Q Consensus       258 ~~li~~~~~----~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~~~~  329 (417)
                      ..+...|..    ..+...+...++...+ .   .+...+..+-..|..    ..++++|..+|....+.|   +...+.
T Consensus       146 ~~L~~~~~~~~~~~~~~~~~~~~~~~a~~-~---g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~  218 (265)
T d1ouva_         146 TILGSLYDAGRGTPKDLKKALASYDKACD-L---KDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCF  218 (265)
T ss_dssp             HHHHHHHHHTSSSCCCHHHHHHHHHHHHH-T---TCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             hhhhhhhccCCCcccccccchhhhhcccc-c---cccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHH
Confidence            777777775    4567788888887766 2   355555555555554    568999999999998887   566777


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 014860          330 SLVSALAL----NGEVEETVKNLWEMIEKQR  356 (417)
Q Consensus       330 ~li~~~~~----~g~~~~A~~~~~~m~~~g~  356 (417)
                      .|-..|.+    ..+.++|.++|++..+.|.
T Consensus       219 ~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~  249 (265)
T d1ouva_         219 NLGAMQYNGEGVTRNEKQAIENFKKGCKLGA  249 (265)
T ss_dssp             HHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCCccCHHHHHHHHHHHHHCcC
Confidence            77777765    3378889999998888773

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.51  E-value=0.00065  Score=50.15  Aligned_cols=95  Identities=12%  Similarity=0.055  Sum_probs=78.0

Q ss_pred             HHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC-----HHHHHHHH
Q 014860          106 ELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT-----EALYNTII  180 (417)
Q Consensus       106 ~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~~li  180 (417)
                      .+...+.+.|++++|+..|....+..  +.+...+..+..++.+.|++++|.+.++.+++.....+.     ..+|..+.
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~--p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg   86 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELD--PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG   86 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC--cccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            45667788999999999999997654  568999999999999999999999999998875432122     24677788


Q ss_pred             HHHHHhCCHHHHHHHHHHhHhC
Q 014860          181 YFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       181 ~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      ..+...+++++|+..|+.....
T Consensus        87 ~~~~~~~~~~~A~~~~~kal~~  108 (128)
T d1elra_          87 NSYFKEEKYKDAIHFYNKSLAE  108 (128)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHhc
Confidence            8888999999999999887764

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.49  E-value=0.021  Score=49.18  Aligned_cols=259  Identities=9%  Similarity=0.036  Sum_probs=115.1

Q ss_pred             CHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Q 014860          103 NNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYF  182 (417)
Q Consensus       103 ~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~  182 (417)
                      .-..+...|.+.|.++.|..+|..+.          -|..++..+.+.++++.|.++....       .+..+|..+...
T Consensus        16 d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~~~   78 (336)
T d1b89a_          16 HIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFA   78 (336)
T ss_dssp             -------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHHHH
Confidence            33345555556666777777776552          1345555666666666666655433       344566666666


Q ss_pred             HHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 014860          183 FAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMIK  262 (417)
Q Consensus       183 ~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~  262 (417)
                      +.+.....-|.-+     ..   ....+......++..|-..|.        .++...+++...... ..+...++-++.
T Consensus        79 l~~~~e~~la~i~-----~~---~~~~~~d~l~~~v~~ye~~~~--------~e~Li~~Le~~~~~~-~~~~~~~~~L~~  141 (336)
T d1b89a_          79 CVDGKEFRLAQMC-----GL---HIVVHADELEELINYYQDRGY--------FEELITMLEAALGLE-RAHMGMFTELAI  141 (336)
T ss_dssp             HHHTTCHHHHHHT-----TT---TTTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHTTST-TCCHHHHHHHHH
T ss_pred             HHhCcHHHHHHHH-----HH---HhhcCHHHHHHHHHHHHHcCC--------hHHHHHHHHHHHcCC-ccchHHHHHHHH
Confidence            6665554433111     11   222344444556666666666        666666666554321 345556666666


Q ss_pred             HHHhcCCHHHHHHHHHHhhhhCCCCCC--------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860          263 GYILSNHVNDALRIFHQMGVVYNYLPN--------SFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSA  334 (417)
Q Consensus       263 ~~~~~g~~~~a~~~~~~m~~~~~~~~~--------~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~  334 (417)
                      .|++.+. ++..+.+.....  .+.+.        ...|.-++..|.+.|.+++|..+.-+   .  .++..-....+..
T Consensus       142 lyak~~~-~kl~e~l~~~s~--~y~~~k~~~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~  213 (336)
T d1b89a_         142 LYSKFKP-QKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDI  213 (336)
T ss_dssp             HHHTTCH-HHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHH
T ss_pred             HHHHhCh-HHHHHHHHhccc--cCCHHHHHHHHHHcCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHH
Confidence            6666542 222222322211  01110        01133344444444444444332211   1  0111111222333


Q ss_pred             HHhcCCHHHHHHHHHHHHHcCCCCCHH-----------HHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHH
Q 014860          335 LALNGEVEETVKNLWEMIEKQRPVDFI-----------TYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDV  403 (417)
Q Consensus       335 ~~~~g~~~~A~~~~~~m~~~g~~p~~~-----------~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~  403 (417)
                      +.+.++.+...++.....+.  .|+..           .-..++..+-+.++......+++...+.|  +....+.+.+.
T Consensus       214 ~~k~~N~e~~~~~i~~yL~~--~p~~i~~lL~~v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n--~~~vn~al~~l  289 (336)
T d1b89a_         214 ITKVANVELYYRAIQFYLEF--KPLLLNDLLMVLSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNL  289 (336)
T ss_dssp             HHHCSSTHHHHHHHHHHHHH--CGGGHHHHHHHHGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHH
T ss_pred             HHccCChHHHHHHHHHHHHc--CHHHHHHHHHHhccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC--hHHHHHHHHHH
Confidence            33333333333333322221  11100           01345555566777777777777766655  34566666666


Q ss_pred             HHhh
Q 014860          404 LEDD  407 (417)
Q Consensus       404 ~~~~  407 (417)
                      +.+.
T Consensus       290 yie~  293 (336)
T d1b89a_         290 FITE  293 (336)
T ss_dssp             HHHT
T ss_pred             HhCc
Confidence            6665

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=0.0016  Score=47.90  Aligned_cols=106  Identities=6%  Similarity=0.008  Sum_probs=81.7

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCC--CCCCCC-HHHHHH
Q 014860          140 YHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNSRN--LECRPS-IRSYNI  216 (417)
Q Consensus       140 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~g~~p~-~~~~~~  216 (417)
                      +..+...+.+.|++++|.+.|.+.++..+  .+...+..+..+|.+.|++++|++.++++.+...  ....+. ..+|..
T Consensus         7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p--~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           7 EKELGNDAYKKKDFDTALKHYDKAKELDP--TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCc--ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            44567788999999999999999999865  6789999999999999999999999999876310  000011 246777


Q ss_pred             HHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHH
Q 014860          217 LFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSL  257 (417)
Q Consensus       217 li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~  257 (417)
                      +-..+...++        +++|++.|+.....  .++....
T Consensus        85 lg~~~~~~~~--------~~~A~~~~~kal~~--~~~~~~~  115 (128)
T d1elra_          85 IGNSYFKEEK--------YKDAIHFYNKSLAE--HRTPDVL  115 (128)
T ss_dssp             HHHHHHHTTC--------HHHHHHHHHHHHHH--CCCHHHH
T ss_pred             HHHHHHHhCC--------HHHHHHHHHHHHhc--CCCHHHH
Confidence            7788888888        99999999887654  3444333

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.36  E-value=0.036  Score=47.66  Aligned_cols=244  Identities=7%  Similarity=0.013  Sum_probs=148.4

Q ss_pred             CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860          102 FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIY  181 (417)
Q Consensus       102 ~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  181 (417)
                      ..|..++..+.+.+++..|.+++...       -+..+|..+...|.+......+     .+...... .+......++.
T Consensus        41 ~d~~rl~~~~v~l~~~~~avd~~~k~-------~~~~~~k~~~~~l~~~~e~~la-----~i~~~~~~-~~~d~l~~~v~  107 (336)
T d1b89a_          41 SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLA-----QMCGLHIV-VHADELEELIN  107 (336)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHH-----HHTTTTTT-TCHHHHHHHHH
T ss_pred             CCHHHHHHHHHhhccHHHHHHHHHHc-------CCHHHHHHHHHHHHhCcHHHHH-----HHHHHHhh-cCHHHHHHHHH
Confidence            34777888888888899888888655       3778999999999887766543     22233333 56666778999


Q ss_pred             HHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860          182 FFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIEPDIFSLNSMI  261 (417)
Q Consensus       182 ~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li  261 (417)
                      .|-..|.+++...+++.....    -..+...++-++..|++.+.         ++..+.+...   ....|   ..-++
T Consensus       108 ~ye~~~~~e~Li~~Le~~~~~----~~~~~~~~~~L~~lyak~~~---------~kl~e~l~~~---s~~y~---~~k~~  168 (336)
T d1b89a_         108 YYQDRGYFEELITMLEAALGL----ERAHMGMFTELAILYSKFKP---------QKMREHLELF---WSRVN---IPKVL  168 (336)
T ss_dssp             HHHHTTCHHHHHHHHHHHTTS----TTCCHHHHHHHHHHHHTTCH---------HHHHHHHHHH---STTSC---HHHHH
T ss_pred             HHHHcCChHHHHHHHHHHHcC----CccchHHHHHHHHHHHHhCh---------HHHHHHHHhc---cccCC---HHHHH
Confidence            999999999999999987542    25677889999999998764         4444333322   11111   22233


Q ss_pred             HHHHhcCCHHHHHHHHHHhhhh-------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 014860          262 KGYILSNHVNDALRIFHQMGVV-------YNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSA  334 (417)
Q Consensus       262 ~~~~~~g~~~~a~~~~~~m~~~-------~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~  334 (417)
                      ..|-..+.|.++.-++..+...       ..-.++..-....+..+.+.++.+...++.....+.  .|+  ..+.|+..
T Consensus       169 ~~c~~~~l~~elv~Ly~~~~~~~~A~~~~i~~~~~~~~~~~f~e~~~k~~N~e~~~~~i~~yL~~--~p~--~i~~lL~~  244 (336)
T d1b89a_         169 RAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL--LLNDLLMV  244 (336)
T ss_dssp             HHHHTTTCHHHHHHHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--GHHHHHHH
T ss_pred             HHHHHcCChHHHHHHHHhcCCHHHHHHHHHHcchhhhhHHHHHHHHHccCChHHHHHHHHHHHHc--CHH--HHHHHHHH
Confidence            4444444444444444443220       000122222344566677777777666666655543  232  23444444


Q ss_pred             HHh-------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHH
Q 014860          335 LAL-------------NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLK  384 (417)
Q Consensus       335 ~~~-------------~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~  384 (417)
                      ...             .+++.....+++.....|   +....++|...|...++++.-...++
T Consensus       245 v~~~~d~~r~V~~~~k~~~l~li~p~Le~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i~  304 (336)
T d1b89a_         245 LSPRLDHTRAVNYFSKVKQLPLVKPYLRSVQNHN---NKSVNESLNNLFITEEDYQALRTSID  304 (336)
T ss_dssp             HGGGCCHHHHHHHHHHTTCTTTTHHHHHHHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             hccCCCHHHHHHHHHhcCCcHHHHHHHHHHHHcC---hHHHHHHHHHHHhCcchhHHHHHHHH
Confidence            444             444444444444444433   45688899999999999766544443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.32  E-value=0.0081  Score=46.23  Aligned_cols=97  Identities=13%  Similarity=0.033  Sum_probs=66.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 014860          257 LNSMIKGYILSNHVNDALRIFHQMGVVYNYLP-------------NSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVP  323 (417)
Q Consensus       257 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~-------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p  323 (417)
                      +...-..+.+.|++++|...|..........+             ....|+.+..+|.+.|++++|+..++...... +.
T Consensus        18 ~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~   96 (168)
T d1kt1a1          18 VKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD-SA   96 (168)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc-cc
Confidence            34445667888999999998877643111111             12345556667777888888888888777653 33


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 014860          324 SSKSYNSLVSALALNGEVEETVKNLWEMIEK  354 (417)
Q Consensus       324 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  354 (417)
                      +...|..+..+|...|++++|...|++..+.
T Consensus        97 ~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l  127 (168)
T d1kt1a1          97 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEV  127 (168)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6777777778888888888888888887764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=0.00013  Score=67.83  Aligned_cols=115  Identities=9%  Similarity=-0.075  Sum_probs=59.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 014860          253 DIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLV  332 (417)
Q Consensus       253 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li  332 (417)
                      +...+..+-..+.+.|+.+.|...+......    ....++..+-..+...|++++|...|++..+... -+...|+.|-
T Consensus       119 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~----~~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg  193 (497)
T d1ya0a1         119 CRVKSSQLGIISNKQTHTSAIVKPQSSSCSY----ICQHCLVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLA  193 (497)
T ss_dssp             ------------------------CCHHHHH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHH
T ss_pred             hHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC----CHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHH
Confidence            4455566666667777777777666554431    1134566667777777778888777777776422 2456777777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 014860          333 SALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRR  373 (417)
Q Consensus       333 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  373 (417)
                      ..|...|+..+|...|.+.... .+|...++..|...+.+.
T Consensus       194 ~~~~~~~~~~~A~~~y~ral~~-~~~~~~a~~nL~~~~~~~  233 (497)
T d1ya0a1         194 ILASSKGDHLTTIFYYCRSIAV-KFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHSS-SBCCHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHHHh
Confidence            7777778877777777777665 245666777776666543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.28  E-value=0.0045  Score=46.94  Aligned_cols=94  Identities=11%  Similarity=-0.114  Sum_probs=77.3

Q ss_pred             HHHHHhccCChhHHHHHHHHhhcCCC---CCCC-----------HHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCC
Q 014860          107 LCNVMTLQEDPLVCLELFNWASKQPR---FRHD-----------ASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGT  172 (417)
Q Consensus       107 ll~~l~~~~~~~~A~~~~~~~~~~~~---~~~~-----------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  172 (417)
                      -...+.+.|++..|+..|..+.....   ..++           ..+|..+..++.+.|++++|.+.++..++..+  .+
T Consensus        23 ~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p--~~  100 (153)
T d2fbna1          23 EGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK--NN  100 (153)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST--TC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccccc--hh
Confidence            44566788999999999998764221   1122           23566788888999999999999999998765  68


Q ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860          173 EALYNTIIYFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       173 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      ..+|..+..+|...|++++|+..|+...+.
T Consensus       101 ~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1         101 VKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             hhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            899999999999999999999999999985

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.26  E-value=0.0035  Score=48.44  Aligned_cols=76  Identities=14%  Similarity=0.028  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHH
Q 014860          325 SKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLL  401 (417)
Q Consensus       325 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll  401 (417)
                      ...|..+..+|.+.|++++|+..+++.++.. +-+...|..+..+|.+.|++++|.+.|++..+....+...+..+-
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~  152 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELL  152 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            3456667777788888888888888877652 345667777888888888888888888888776543444444433

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.22  E-value=0.0034  Score=48.55  Aligned_cols=77  Identities=6%  Similarity=-0.126  Sum_probs=50.1

Q ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCCC
Q 014860          172 TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGIE  251 (417)
Q Consensus       172 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~~  251 (417)
                      ....|..+..+|.+.|++++|+..++...+.    -+.+..+|..+..++...|+        +++|++.|+...+.. +
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~----~p~~~~a~~~~g~~~~~l~~--------~~~A~~~~~~al~l~-p  142 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEI----DPSNTKALYRRAQGWQGLKE--------YDQALADLKKAQEIA-P  142 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHC-T
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhh----hhhhhhHHHhHHHHHHHccC--------HHHHHHHHHHHHHhC-C
Confidence            3445666677777777777777777777764    13456677777777777777        777777777777653 2


Q ss_pred             CCHHHHHHHH
Q 014860          252 PDIFSLNSMI  261 (417)
Q Consensus       252 p~~~~~~~li  261 (417)
                      .+..+...+.
T Consensus       143 ~n~~~~~~l~  152 (169)
T d1ihga1         143 EDKAIQAELL  152 (169)
T ss_dssp             TCHHHHHHHH
T ss_pred             CCHHHHHHHH
Confidence            2344444433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.16  E-value=0.012  Score=45.27  Aligned_cols=64  Identities=13%  Similarity=0.094  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCC
Q 014860          174 ALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDG  249 (417)
Q Consensus       174 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g  249 (417)
                      .+|+.+..+|.+.|++++|+..++...+.    -+.+..+|..+..++...|+        +++|...|++..+..
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l----~p~~~~a~~~~~~~~~~l~~--------~~~A~~~~~~al~l~  128 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGL----DSANEKGLYRRGEAQLLMNE--------FESAKGDFEKVLEVN  128 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH----CTTCHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHSC
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhc----ccchHHHHHHHHHHHHHcCC--------HHHHHHHHHHHHHhC
Confidence            34555666777777777777777777764    14456777777777777777        777777777777653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00018  Score=66.99  Aligned_cols=224  Identities=9%  Similarity=-0.059  Sum_probs=116.8

Q ss_pred             hHHHHHHhcCCCC-CCHHHHHHHHhccCChhHHHHHHHHhhcCCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHHcC
Q 014860           89 TQFRCAVSELPPR-FNNEELCNVMTLQEDPLVCLELFNWASKQPRFRHDA-STYHIMTRKLGAAKMYQEMDDVVNQMLAT  166 (417)
Q Consensus        89 ~~~~~~l~~~p~~-~~~~~ll~~l~~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~  166 (417)
                      ..+.+++.--|+. ..+..+..++...++.++|   |+.+...   .|+- ..++ +...+.+ ..+..+.+.++...+.
T Consensus         7 q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~---dp~~a~~~~-~e~~Lw~-~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           7 QYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVT---DLEYALDKK-VEQDLWN-HAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH---CHHHHHHHT-HHHHHHH-HHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc---ChhhHHHHh-HHHHHHH-HHHHHHHHHHHHhccc
Confidence            3445555444332 2444555666666667665   4544321   1211 1111 1111111 2245566677776665


Q ss_pred             CCCCCCHH-HHHHHH-HHHHHhCCHHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHH
Q 014860          167 PSFCGTEA-LYNTII-YFFAEARKLSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQ  244 (417)
Q Consensus       167 ~~~~~~~~-~~~~li-~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~  244 (417)
                      ... ++.. ....+. ..+...+.++.|+..+......    -.++...+..+-..+.+.|+        .++|...+..
T Consensus        79 ~~~-~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l----~~~~~~~~~~lg~~~~~~~~--------~~~A~~~~~~  145 (497)
T d1ya0a1          79 RAN-PNRSEVQANLSLFLEAASGFYTQLLQELCTVFNV----DLPCRVKSSQLGIISNKQTH--------TSAIVKPQSS  145 (497)
T ss_dssp             SSC-TTTTHHHHHHHHHHHHHHHHHHHHHHHHTC-------------------------------------------CCH
T ss_pred             ccC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----ChhhHHHHHHhHHHHHhCCC--------HHHHHHHHHH
Confidence            433 3322 222222 2222345566665555544332    13345667788888888888        8888888776


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 014860          245 MVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPS  324 (417)
Q Consensus       245 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~  324 (417)
                      .....   ...++..+-..+...|++++|...|.+..+.  .+-+...|+.|-..+...|+..+|...|.+..... .|-
T Consensus       146 al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l--~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~  219 (497)
T d1ya0a1         146 SCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQL--VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPF  219 (497)
T ss_dssp             HHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCC
T ss_pred             HhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCC
Confidence            65421   1356777888899999999999999998763  23456899999999999999999999999998764 567


Q ss_pred             HHHHHHHHHHHHhcC
Q 014860          325 SKSYNSLVSALALNG  339 (417)
Q Consensus       325 ~~~~~~li~~~~~~g  339 (417)
                      ..++..|...+.+..
T Consensus       220 ~~a~~nL~~~~~~~~  234 (497)
T d1ya0a1         220 PAASTNLQKALSKAL  234 (497)
T ss_dssp             HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhh
Confidence            888888888776543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.07  E-value=0.00052  Score=57.73  Aligned_cols=51  Identities=10%  Similarity=0.089  Sum_probs=28.2

Q ss_pred             ccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHh
Q 014860          149 AAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKN  201 (417)
Q Consensus       149 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  201 (417)
                      +.|++++|...+++.++..+  .|...+..+...|+..|++++|.+.|+...+
T Consensus         8 ~~G~l~eAl~~l~~al~~~P--~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~   58 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKASP--KDASLRSSFIELLCIDGDFERADEQLMQSIK   58 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTCT--TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            44555555555555555443  4555555555555555555555555555554

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.04  E-value=0.00078  Score=56.61  Aligned_cols=123  Identities=15%  Similarity=0.001  Sum_probs=86.7

Q ss_pred             HhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHH
Q 014860          111 MTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLS  190 (417)
Q Consensus       111 l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~  190 (417)
                      ..+.|++++|+..++...+..  +.|...+..+...++..|++++|.+.++...+...  .+...+..+...+...+..+
T Consensus         6 aL~~G~l~eAl~~l~~al~~~--P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P--~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKAS--PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP--EYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG--GGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CcHHHHHHHHHHHHhccccH
Confidence            346799999999999998776  67999999999999999999999999999988763  34455555555544433333


Q ss_pred             HHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHC
Q 014860          191 RAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVND  248 (417)
Q Consensus       191 ~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~  248 (417)
                      ++..-......   .+-+++...+......+...|+        .++|.++++++.+.
T Consensus        82 ~a~~~~~~~~~---~~~p~~~~~~l~~a~~~~~~gd--------~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          82 DFAQGAATAKV---LGENEELTKSLVSFNLSMVSQD--------YEQVSELALQIEEL  128 (264)
T ss_dssp             HHTTSCCCEEC---CCSCHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHH
T ss_pred             HHHHHhhhhhc---ccCchHHHHHHHHHHHHHhCCC--------HHHHHHHHHHHHhc
Confidence            33221111111   1112334445556677888899        99999999998864

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.83  E-value=0.0028  Score=47.71  Aligned_cols=116  Identities=13%  Similarity=-0.018  Sum_probs=85.9

Q ss_pred             hccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHc----------cCChhHHHHHHHHHHcCCCCCCCHHHHHHHHH
Q 014860          112 TLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGA----------AKMYQEMDDVVNQMLATPSFCGTEALYNTIIY  181 (417)
Q Consensus       112 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~----------~~~~~~a~~~~~~m~~~~~~~~~~~~~~~li~  181 (417)
                      .+.+.+++|++.|+.+.+..  +.+...+..+..++..          .+.+++|...++...+..+  .+..+|..+..
T Consensus         8 ~r~~~fe~A~~~~e~al~~~--P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P--~~~~a~~~lG~   83 (145)
T d1zu2a1           8 DRILLFEQIRQDAENTYKSN--PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP--KKDEAVWCIGN   83 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT--TCHHHHHHHHH
T ss_pred             HHHccHHHHHHHHHHHHhhC--CcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc--hhhHHHhhHHH
Confidence            34456899999999997665  6788888888888764          3556889999999998765  67889999988


Q ss_pred             HHHHhCC-----------HHHHHHHHHHhHhCCCCCCCCCHHHHHHHHHHHHhcCCccchhhhhHHHHHHHHHHHHHCCC
Q 014860          182 FFAEARK-----------LSRAVYVFKYMKNSRNLECRPSIRSYNILFTAFLSRGKNTYINHVYMETIRCLFKQMVNDGI  250 (417)
Q Consensus       182 ~~~~~g~-----------~~~a~~~~~~m~~~~~~g~~p~~~~~~~li~~~~~~g~~~~~~~~~~~~a~~~~~~m~~~g~  250 (417)
                      +|...|+           +++|.+.|+...+.     .|+...|..-+..+              .+|.+++.+..+.|+
T Consensus        84 ~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l-----~P~~~~~~~~L~~~--------------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          84 AYTSFAFLTPDETEAKHNFDLATQFFQQAVDE-----QPDNTHYLKSLEMT--------------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-----CTTCHHHHHHHHHH--------------HTHHHHHHHHHHSSS
T ss_pred             HHHHcccchhhHHHHHHhHHHhhhhhhccccc-----CCCHHHHHHHHHHH--------------HHHHHHHHHHHHHhc
Confidence            8877653           68899999999875     67766665544443              345566666666553

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.77  E-value=0.029  Score=42.33  Aligned_cols=54  Identities=13%  Similarity=0.131  Sum_probs=25.6

Q ss_pred             HHhcCCHHHHHHHHHHhhhhCCCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 014860          264 YILSNHVNDALRIFHQMGVVYNYLPN----------SFSYDYLIHGLCAQGRTKNARELCDEMK  317 (417)
Q Consensus       264 ~~~~g~~~~a~~~~~~m~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~l~~~m~  317 (417)
                      +...|++++|.+.|++..+...-.|+          ..+|+.+-.+|...|++++|..-+++..
T Consensus        19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al   82 (156)
T d2hr2a1          19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKAL   82 (156)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhh
Confidence            44556666666666555431111111          2344455555555555555555544443

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.66  E-value=0.023  Score=42.85  Aligned_cols=98  Identities=18%  Similarity=0.125  Sum_probs=73.4

Q ss_pred             HHHHHH--HHHHHhcCCHHHHHHHHHHHHHCC-CCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Q 014860          291 FSYDYL--IHGLCAQGRTKNARELCDEMKRKG-FVPS----------SKSYNSLVSALALNGEVEETVKNLWEMIEK---  354 (417)
Q Consensus       291 ~~~~~l--i~~~~~~g~~~~A~~l~~~m~~~g-~~p~----------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---  354 (417)
                      .+|..+  ...+...|++++|+..|++..+.. -.|+          ...|+.+-.+|.+.|++++|...+++..+.   
T Consensus         8 ~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~   87 (156)
T d2hr2a1           8 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   87 (156)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccc
Confidence            355555  445667899999999999987531 1121          467888999999999999999999987753   


Q ss_pred             --CCCCCH-----HHHHHHHHHHHHcCCHhHHHHHHHHHHH
Q 014860          355 --QRPVDF-----ITYRTVLDEICRRGRAGEAMKLLKELQN  388 (417)
Q Consensus       355 --g~~p~~-----~~~~~li~~~~~~g~~~~A~~~~~~m~~  388 (417)
                        ...++.     ..|..+-.+|...|++++|.+.|++..+
T Consensus        88 ~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          88 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence              122222     2466678899999999999999998665

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=96.41  E-value=0.011  Score=44.15  Aligned_cols=76  Identities=12%  Similarity=0.062  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 014860          306 TKNARELCDEMKRKGFVPSSKSYNSLVSALALNG-----------EVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRG  374 (417)
Q Consensus       306 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g-----------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  374 (417)
                      +++|...|++..+... -+..+|..+-.+|...|           .+++|.+.|++..+.  .|+...|..-+..+    
T Consensus        57 ~~~Ai~~~~kAl~l~P-~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~----  129 (145)
T d1zu2a1          57 IQEAITKFEEALLIDP-KKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT----  129 (145)
T ss_dssp             HHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH----
T ss_pred             HHHHHHHHHHHHHhcc-hhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH----
Confidence            3556666666555321 14555666655555443           246677777777764  56665555444333    


Q ss_pred             CHhHHHHHHHHHHHCC
Q 014860          375 RAGEAMKLLKELQNKN  390 (417)
Q Consensus       375 ~~~~A~~~~~~m~~~~  390 (417)
                        .+|.+++.+..+.|
T Consensus       130 --~ka~~~~~e~~k~~  143 (145)
T d1zu2a1         130 --AKAPQLHAEAYKQG  143 (145)
T ss_dssp             --HTHHHHHHHHHHSS
T ss_pred             --HHHHHHHHHHHHHh
Confidence              35566666665554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.36  E-value=0.092  Score=37.21  Aligned_cols=134  Identities=13%  Similarity=0.133  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 014860          235 METIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCD  314 (417)
Q Consensus       235 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~  314 (417)
                      .++..++..+....   .+..-||-+|--....-+-+...++++.+..-+.+.|-              ++......-+-
T Consensus        18 ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C--------------~Nlk~vv~C~~   80 (161)
T d1wy6a1          18 IDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC--------------QNLKSVVECGV   80 (161)
T ss_dssp             HHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC--------------SCTHHHHHHHH
T ss_pred             HHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchhh--------------hcHHHHHHHHH
Confidence            77777888777753   35556666666666667777777777777664443331              12222211111


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCC
Q 014860          315 EMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNL  391 (417)
Q Consensus       315 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~  391 (417)
                      .+-     -+...++..++.+..+|+-+.-.++++.+.+. -+|++...-.+..+|.+.|...++.+++.+.-++|+
T Consensus        81 ~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          81 INN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             HTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             Hhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence            111     13334555666666777777777776665553 356666666666777777777777777777766665

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.92  E-value=0.047  Score=37.12  Aligned_cols=59  Identities=10%  Similarity=0.034  Sum_probs=27.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          295 YLIHGLCAQGRTKNARELCDEMKRK-----GFVPS-SKSYNSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       295 ~li~~~~~~g~~~~A~~l~~~m~~~-----g~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      .+-..+.+.|++++|...|++..+.     ...++ ..+++.|-.+|.+.|++++|.+.+++..+
T Consensus        10 ~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~   74 (95)
T d1tjca_          10 ELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (95)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHH
Confidence            3444455555555555555544321     01111 33445555555555555555555555544

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.037  Score=37.65  Aligned_cols=77  Identities=14%  Similarity=0.101  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHHcCCC----CCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHhHhCCCCCCCCC
Q 014860          136 DASTYHIMTRKLGAAKMYQEMDDVVNQMLATPS----FCG-TEALYNTIIYFFAEARKLSRAVYVFKYMKNSRNLECRPS  210 (417)
Q Consensus       136 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~g~~p~  210 (417)
                      +...+-.+...+.+.|++++|...+++..+...    ..+ ...+++.+..+|.+.|++++|+..+++..+.     .|+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l-----~P~   78 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL-----DPE   78 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-----CTT
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh-----CcC
Confidence            444555677788889999999888888765321    112 2567888999999999999999999998875     454


Q ss_pred             -HHHHHHH
Q 014860          211 -IRSYNIL  217 (417)
Q Consensus       211 -~~~~~~l  217 (417)
                       ..+++.+
T Consensus        79 ~~~a~~Nl   86 (95)
T d1tjca_          79 HQRANGNL   86 (95)
T ss_dssp             CHHHHHHH
T ss_pred             CHHHHHHH
Confidence             4444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=94.08  E-value=0.66  Score=33.20  Aligned_cols=79  Identities=6%  Similarity=-0.073  Sum_probs=36.1

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHh
Q 014860          306 TKNARELCDEMKRKGFVPSSKSYNSLVSALAL----NGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICR----RGRAG  377 (417)
Q Consensus       306 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~  377 (417)
                      .++|.+++++..+.|   +......|-..|..    ..+.++|.++|++..+.|   +......|-..|..    ..+.+
T Consensus        39 ~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~  112 (133)
T d1klxa_          39 KQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEK  112 (133)
T ss_dssp             HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred             HHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHH
Confidence            344444444444443   23333333333332    234555555555555544   33333334333433    23555


Q ss_pred             HHHHHHHHHHHCC
Q 014860          378 EAMKLLKELQNKN  390 (417)
Q Consensus       378 ~A~~~~~~m~~~~  390 (417)
                      +|.++|+.-.+.|
T Consensus       113 ~A~~~~~~Aa~~G  125 (133)
T d1klxa_         113 QAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHCC
Confidence            6666666655555

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=93.74  E-value=0.73  Score=32.52  Aligned_cols=121  Identities=11%  Similarity=0.118  Sum_probs=77.0

Q ss_pred             HhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 014860          265 ILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCAQGRTKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEET  344 (417)
Q Consensus       265 ~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A  344 (417)
                      .-.|.+++..+++.+....    .+..-||.+|--....-+-+-..+.++.+-+-   -|.          ..++++...
T Consensus        13 ildG~ve~Gveii~k~~~s----s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDl----------s~C~Nlk~v   75 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKS----STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSV   75 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHH----SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHH
T ss_pred             HHhhhHHhHHHHHHHHccc----CCccccceeeeecccccchHHHHHHHHHHhhh---cCc----------hhhhcHHHH
Confidence            3456777777777777662    56666777776666666666666666555432   121          123333333


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHHHHHCCCCChhhHHHHHHHHHhh
Q 014860          345 VKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKELQNKNLIDGYTYTKLLDVLEDD  407 (417)
Q Consensus       345 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~p~~~t~~~ll~~~~~~  407 (417)
                      ...+-.+-     .+...+...++.+...|.-+...++++++.+.+-|++.....+-.+|.+-
T Consensus        76 v~C~~~~n-----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kki  133 (161)
T d1wy6a1          76 VECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRV  133 (161)
T ss_dssp             HHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHh
Confidence            33332221     24455677778899999999999999998888778888888888888766

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=90.69  E-value=2  Score=30.47  Aligned_cols=111  Identities=7%  Similarity=-0.046  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 014860          234 YMETIRCLFKQMVNDGIEPDIFSLNSMIKGYILSNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHGLCA----QGRTKNA  309 (417)
Q Consensus       234 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~----~g~~~~A  309 (417)
                      ..++|.++|++..+.|. +  ..+..|.  .....+.++|.+.++...+ .|   +...+..|-..|..    ..+.++|
T Consensus         8 d~~~A~~~~~kaa~~g~-~--~a~~~l~--~~~~~~~~~a~~~~~~aa~-~g---~~~a~~~Lg~~y~~g~~~~~d~~~A   78 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE-M--FGCLSLV--SNSQINKQKLFQYLSKACE-LN---SGNGCRFLGDFYENGKYVKKDLRKA   78 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC-T--THHHHHH--TCTTSCHHHHHHHHHHHHH-TT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             CHHHHHHHHHHHHHCCC-h--hhhhhhc--cccccCHHHHHHHHhhhhc-cc---chhhhhhHHHhhhhccccchhhHHH
Confidence            38999999999988873 2  2233332  3345678999999998877 33   44555555555554    4568999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHcCC
Q 014860          310 RELCDEMKRKGFVPSSKSYNSLVSALAL----NGEVEETVKNLWEMIEKQR  356 (417)
Q Consensus       310 ~~l~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~  356 (417)
                      .++|++..+.|   +......|-..|..    ..+.++|.++|++..+.|.
T Consensus        79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            99999999887   55566666666665    4578899999998888763

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=89.36  E-value=6.4  Score=34.40  Aligned_cols=274  Identities=11%  Similarity=-0.008  Sum_probs=153.0

Q ss_pred             ChhHHHHHHhcCCCCCCHHHH----HHHHhccCChhHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 014860           87 DDTQFRCAVSELPPRFNNEEL----CNVMTLQEDPLVCLELFNWASKQPRFRHDASTYHIMTRKLGAAKMYQEMDDVVNQ  162 (417)
Q Consensus        87 ~~~~~~~~l~~~p~~~~~~~l----l~~l~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  162 (417)
                      +...+..-+...|+.+.-+.+    +..+.+.+++...+..+    .  ..+.+...-.....+....|+.++|......
T Consensus        54 ~~~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~~~w~~~~~~~----~--~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~  127 (450)
T d1qsaa1          54 PAVTVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFS----P--EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKE  127 (450)
T ss_dssp             CHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHC----C--SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHCCCChhHHHHHHHHHHHHHhccCHHHHHHhc----c--CCCCCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            345566777777776544333    45667778887755544    2  2245677767778888889999888888887


Q ss_pred             HHcCCCCCCCHHHHHHHHHHHHHhCCHH--HHHHHHHHhHhCCCC--------CCCC-CHHHHHHHHHHHHhcCCccchh
Q 014860          163 MLATPSFCGTEALYNTIIYFFAEARKLS--RAVYVFKYMKNSRNL--------ECRP-SIRSYNILFTAFLSRGKNTYIN  231 (417)
Q Consensus       163 m~~~~~~~~~~~~~~~li~~~~~~g~~~--~a~~~~~~m~~~~~~--------g~~p-~~~~~~~li~~~~~~g~~~~~~  231 (417)
                      +-..+..  .....+.+...+.+.|.+.  ...+-++.+...++.        .+.+ ........+........     
T Consensus       128 lW~~~~~--~p~~c~~l~~~~~~~~~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~~~l~~~p~~-----  200 (450)
T d1qsaa1         128 LWLTGKS--QPNACDKLFSVWRASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNT-----  200 (450)
T ss_dssp             HHSCSSC--CCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCGGG-----
T ss_pred             HHhcCCC--CchHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHHHHHHhChHh-----
Confidence            7777653  3334444555444444432  222222222222100        0011 11222222222221111     


Q ss_pred             hhhHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHhhhhCCCCCCHHHHHHHHHH----HHhcCC
Q 014860          232 HVYMETIRCLFKQMVNDGIEPDIFSLNSMIKGYIL--SNHVNDALRIFHQMGVVYNYLPNSFSYDYLIHG----LCAQGR  305 (417)
Q Consensus       232 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~----~~~~g~  305 (417)
                         .   .   ......  ..+......+..++.+  ..+.+.+..++..........++  -+..+-..    +...+.
T Consensus       201 ---~---~---~~~~~~--~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~--~~~~~~~~~a~~~~~~~~  267 (450)
T d1qsaa1         201 ---V---L---TFARTT--GATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNED--QIQELRDIVAWRLMGNDV  267 (450)
T ss_dssp             ---H---H---HHHHHS--CCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHH--HHHHHHHHHHHTSCSTTC
T ss_pred             ---H---H---HHHhcC--CCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHH--HHHHHHHHHHHHHHHcCc
Confidence               1   1   111111  2344444444444444  35678888888887764333332  22222222    234566


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHhHHHHHHHH
Q 014860          306 TKNARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIEKQRPVDFITYRTVLDEICRRGRAGEAMKLLKE  385 (417)
Q Consensus       306 ~~~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  385 (417)
                      .+.+..++......+.  +.......+......+++..+...++.|... ..-...-.--+.+++...|+.++|...|..
T Consensus       268 ~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~  344 (450)
T d1qsaa1         268 TDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQ  344 (450)
T ss_dssp             CHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHH
Confidence            7778888777766543  5555555666677788999999999887643 222334445577888999999999999998


Q ss_pred             HHHC
Q 014860          386 LQNK  389 (417)
Q Consensus       386 m~~~  389 (417)
                      ....
T Consensus       345 ~a~~  348 (450)
T d1qsaa1         345 LMQQ  348 (450)
T ss_dssp             HHTS
T ss_pred             HhcC
Confidence            8753

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=88.75  E-value=2.2  Score=28.34  Aligned_cols=50  Identities=10%  Similarity=0.131  Sum_probs=39.6

Q ss_pred             ChhHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHhC
Q 014860          152 MYQEMDDVVNQMLATPSFCGTEALYNTIIYFFAEARKLSRAVYVFKYMKNS  202 (417)
Q Consensus       152 ~~~~a~~~~~~m~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  202 (417)
                      +.=++.+-++.+...+.+ |++.+..+.+++|-+.+++..|+++|+-.+.+
T Consensus        21 D~we~rrgmN~l~~~DlV-PeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLV-PEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccC-CCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            445566777777777777 88888888888888888888888888888764

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.60  E-value=2.7  Score=27.93  Aligned_cols=46  Identities=15%  Similarity=0.154  Sum_probs=21.8

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 014860          308 NARELCDEMKRKGFVPSSKSYNSLVSALALNGEVEETVKNLWEMIE  353 (417)
Q Consensus       308 ~A~~l~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  353 (417)
                      ++.+-++.+......|+.....+.+++|.+..++.-|.++|+..+.
T Consensus        24 e~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          24 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            3334444444444445555555555555555555555555544443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=80.23  E-value=7.3  Score=27.09  Aligned_cols=67  Identities=12%  Similarity=0.012  Sum_probs=36.4

Q ss_pred             CCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHhHHHHHHHHHHHCC
Q 014860          323 PSSKSYNSLVSALALNG---EVEETVKNLWEMIEKQRPVDF-ITYRTVLDEICRRGRAGEAMKLLKELQNKN  390 (417)
Q Consensus       323 p~~~~~~~li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~  390 (417)
                      |+..|--...-+++++.   ++++|+.+|++..+.+ +.+. ..+-.|.-+|.+.|++++|.+.++.+.+..
T Consensus        33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie  103 (124)
T d2pqrb1          33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  103 (124)
T ss_dssp             SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence            34444333444444443   3456666666666532 1222 244455556667777777777777776654