Citrus Sinensis ID: 014882

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410------
Protein Sequence
MQRRILSQISQSAKLNFRFTQNFFLFSSNETQSPNLNGGGDDPLYSDVPKPRRDKSERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLVA
Secondary Structure (PSIPRED)
cccHHHHHHHccccccEEEEEcEEEcccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEccccccccccEEcccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccEEcccccccccccccccccccccccccccccHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHcccccccccEEEEEcccccccccHHHHHHcccccHHHHHHHHccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHccccEEEEcccccccccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccEEEccccccccccccccccccccccEEcccccccEEccHHEEEccccccccEEccccccccccHHHHHHHHHHccccccccccccccccEEEEccEEEEccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEccccccEEEcccccccHcccccHcccccccccccHcEHcccccccEEEEEccccccHHHHHHHHHcccccHEEEHHHHccccccHHHcHHHccccccccHHHHHHcc
Coil and Loop (DISEMBL)
MQRRILSQISQSAKLNFRFTQNFFlfssnetqspnlngggddplysdvpkprrdkserkpyptpmKVLIRRAKEEresrkaepvkllehppgngllvpELVSVAHQVYRARLSLLYGLSKliqfipvqrcrfcsevhighvgheirtctgpksgfrsATHVwrkggvgdavffpkcfhlhdrvgkarvvhderhsvpripAIVELCIQAgvdiekyptkrrtkpvysvegrivdfESVVENDEMEKHVLDSYLGAkidemersskcermdqsndveganLREVSIRTLASWFEMISGAKEMMEKYTVwtcgycpevqvgpkghkvrmckaskhqsrdgMHAWQEAtmddlvgpnyvwhvqdlngpalENTLKRYYGKAPAVVELCvhggapvpdqyrsmmrldvvpperdevdlva
Flexible Loop (DISEMBL)
MQRRILSQISQSAKLNFRFTQNFFLFSSNEtqspnlngggddplysdvpkprrdkserkpyptpmkvlIRRAkeeresrkaepvkllehppgngLLVPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVgheirtctgpksGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDerhsvpripaivELCIQAgvdiekyptkrrtkpvysvegrivdfesvvendemekHVLDSYLGAKIDEMERSSKcermdqsndveganlreVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHggapvpdqyrSMMRldvvpperdevdlva
Low Complexity Region (SEG)
MQRRILSQISQSAKLNFRFTQNFFLFSSNETQSPNLNGGGDDPLYSDVPKPRRDKSERKPYPTPMKVLIrrakeeresrkaePVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLVA
Disordered region (IsUnstruct)
********************************************************************************************NGLLVPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSYLG*************************LREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMC**********MHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQY********************
Disordered Region (DISOPRED)
************AKLNFRFTQN********************PLYSDVP*********KPYPTPMKVL*************************GLLVPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRI*************************************************EVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPER**VDLVA
Disordered Region (DISEMBL)
MQRRILSQISQSAKLNFRFTQNFFLFSSNETQSPNLNGGGDDPLYSDVPKPRRDKSERKPYPTPMKVLIRRA*********EPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEME************DVEGANLREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPK*****************MHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLVA
Disordered Region (DISPRO)
**RRILSQISQSAKLNFRFTQNFFLFSSNETQSPNLNGGGDDPLYSDVPKPRRDKSERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVV*********************************NDVEGANLREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLVA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQRRILSQISQSAKLNFRFTQNFFLFSSNETQSPNLNGGGDDPLYSDVPKPRRDKSERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLVA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	416	2.2.26 [Sep-21-2011]
Q9FH50	402	APO protein 3, mitochondr	yes	no	0.951	0.985	0.623	1e-150
Q8W4A5	440	APO protein 2, chloroplas	no	no	0.944	0.893	0.411	4e-82
Q9XIR4	436	APO protein 1, chloroplas	no	no	0.870	0.830	0.418	7e-81
Q9LSZ0	337	APO protein 4, mitochondr	no	no	0.639	0.789	0.311	5e-39

>sp|Q9FH50|APO3_ARATH APO protein 3, mitochondrial OS=Arabidopsis thaliana GN=APO3 PE=2 SV=1

 Score =  532 bits (1370), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 263/422 (62%), Positives = 318/422 (75%), Gaps = 26/422 (6%)

Query: 1   MQRRILSQISQSAKLNFRFTQNFFLFSSNETQSPNLN-----GGGDDPLYSDVPKPRRDK 55
           MQRR L +IS        F      FSS+     NL+        +DPLY+DVPKP +DK
Sbjct: 1   MQRRKLVEISI-------FVIRKSNFSSSIKSLTNLDVDVSVDNDEDPLYADVPKPPKDK 53

Query: 56  SERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLL 115
           SERKPYPTPMK LIRRAKEE++ RK +P ++LE PP NGLLVPELV VAH V+R R  LL
Sbjct: 54  SERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLVPELVDVAHCVHRCRNMLL 113

Query: 116 YGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPK 175
            GLSK+I  +PV RCR C+EVHIG  GHEIRTCTGP SG RSATHVW++G V D V FPK
Sbjct: 114 SGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLFPK 173

Query: 176 CFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDF 235
           CFHL+DR  K RV+HDER +VP+I A++ELCIQAGVD+EK+P+KRR+KPVYS+EGRIVDF
Sbjct: 174 CFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKRRSKPVYSIEGRIVDF 233

Query: 236 ESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLASWFEMI 295
           E V  ND   +  + S        ++   +C+        E  +L+E+S  T+ SWFEM+
Sbjct: 234 EDV--NDGNSELAVTSTTTL----IQEDDRCKE-------EKKSLKELSFETMESWFEMV 280

Query: 296 SGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNY 355
            G +++ME+Y VWTCGYCPE+QVGPKGHKVRMCKA+KHQ RDGMHAWQEAT+DD+VGP Y
Sbjct: 281 LGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATIDDVVGPTY 340

Query: 356 VWHVQD-LNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDL 414
           VWHV+D  +G  L+N+LKR+YGKAPAV+E+CV GGAPVPDQY SMMRLDVV P+RDEVDL
Sbjct: 341 VWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYPQRDEVDL 400

Query: 415 VA 416
           VA
Sbjct: 401 VA 402

May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of mitochondria.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8W4A5|APO2_ARATH APO protein 2, chloroplastic OS=Arabidopsis thaliana GN=APO2 PE=2 SV=1

 Score =  305 bits (781), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 167/406 (41%), Positives = 238/406 (58%), Gaps = 13/406 (3%)

Query: 11  QSAKLNFRFTQNFFLFSSNETQSPNLNGGGDDPLYSDVPKPRRDKSERKPYPTPMKVLIR 70
           Q + + F    N  +  S E +S  L    D P   D+PK +  + E+KP+P P+ V +R
Sbjct: 46  QGSSIEFSLQLNSRVVLSKERRSLPLVVRNDRPQNEDLPK-QYTRREKKPFPVPI-VDLR 103

Query: 71  RAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRC 130
           RA  ER     +  K    PP NG++V  LV +A++VY AR+ L+  L +L++ + V  C
Sbjct: 104 RAARERVKNNKDKPKRPLPPPKNGMVVKSLVPLAYKVYNARIRLINNLHRLMKVVRVNAC 163

Query: 131 RFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVH 190
            +C+E+H+G  GH  ++C GP +  R   H W    + D +   + +HL DR+GK R+ H
Sbjct: 164 GWCNEIHVGPYGHPFKSCKGPNTSQRKGLHEWTNSVIEDVIVPLEAYHLFDRLGK-RIRH 222

Query: 191 DERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLD 250
           DER S+PR+PA+VELCIQ GV+I ++P KRR KP+  + G+       V+ DE E    +
Sbjct: 223 DERFSIPRVPAVVELCIQGGVEIPEFPAKRRRKPIIRI-GK----SEFVDADETELPDPE 277

Query: 251 SYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLASWFEMISGAKEMMEKYTVWTC 310
                     E     E    S++ E  +L E    TL +W EM +GAK++M  Y V  C
Sbjct: 278 PQPPPVPLLTELPVS-EITPPSSEEETVSLAE---ETLQAWEEMRAGAKKLMRMYRVRVC 333

Query: 311 GYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPALENT 370
           GYCPEV VGP GHK + C A KHQ R+G H WQ A +DDL+ P YVWHV D+NGP ++  
Sbjct: 334 GYCPEVHVGPTGHKAQNCGAFKHQQRNGQHGWQSAVLDDLIPPRYVWHVPDVNGPPMQRE 393

Query: 371 LKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDV-VPPERDEVDLV 415
           L+ +YG+APAVVE+C   GA VP+ YR+ MRL+V +P    E ++V
Sbjct: 394 LRSFYGQAPAVVEICAQAGAVVPEHYRATMRLEVGIPSSVKEAEMV 439

May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XIR4|APO1_ARATH APO protein 1, chloroplastic OS=Arabidopsis thaliana GN=APO1 PE=2 SV=1

 Score =  301 bits (771), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 155/370 (41%), Positives = 231/370 (62%), Gaps = 8/370 (2%)

Query: 47  DVPKPRRDKSERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQ 106
           D+P P   K+++KPYP P K +   A+++++  +    K L+ PP NGLLVP LV VA Q
Sbjct: 75  DLP-PILPKNKKKPYPIPFKQIQEEARKDKKLAQMGIEKQLD-PPKNGLLVPNLVPVADQ 132

Query: 107 VYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGG 166
           V      L+ GL++L+  +PV  C  C  VH+ +VGH IR C GP +  R  +H W KG 
Sbjct: 133 VIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGT 192

Query: 167 VGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVY 226
           + D +   + +H++D  G+ R+ H+ R    RIPA+VELCIQAGV+I +YP +RRT+P+ 
Sbjct: 193 INDVLIPVESYHMYDPFGR-RIKHETRFEYERIPALVELCIQAGVEIPEYPCRRRTQPIR 251

Query: 227 SVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIR 286
            +  R++D      + E EK    S L + + E++     ER          ++ +++  
Sbjct: 252 MMGKRVIDRGGY--HKEPEKPQTSSSLSSPLAELDTLGVFERYPPPTP---EDIPKIAQE 306

Query: 287 TLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEAT 346
           T+ ++ ++  G  ++M K+TV  CGYC EV VGP GH V++C   KHQ RDG H WQ+A 
Sbjct: 307 TMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHGWQDAL 366

Query: 347 MDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVP 406
           +D++  PNYVWHV+DL G  L   L+R+YGKAPA+VE+C+H GA VP +Y++MMRLD++ 
Sbjct: 367 VDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMRLDIIV 426

Query: 407 PERDEVDLVA 416
           P+  E D+VA
Sbjct: 427 PDSQEADMVA 436

Involved in the stable assembly of several 4Fe-4S cluster-containing complexes of chloroplasts. May participate in 4Fe-4S cofactor incorporation into psaA and/or psaB during translation.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSZ0|APO4_ARATH APO protein 4, mitochondrial OS=Arabidopsis thaliana GN=APO4 PE=2 SV=2

 Score =  162 bits (410), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 95/305 (31%), Positives = 151/305 (49%), Gaps = 39/305 (12%)

Query: 97  VPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFR 156
           V E+V VA ++  AR +L+  ++ L++  PV  C+FCSEV +G  GH I TC        
Sbjct: 55  VKEIVPVAEEILIARKNLISNIAALLKVFPVLTCKFCSEVFVGKEGHLIETCRSYIRRGN 114

Query: 157 SATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKY 216
           +  H W  G + D +   + +HLH+ + +  + H ER    R+PAI+ELC QAG     +
Sbjct: 115 NRLHEWVPGSINDILVPVESYHLHN-ISQGVIRHQERFDYDRVPAILELCCQAGAI---H 170

Query: 217 PTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVE 276
           P +            I+ +  + +N ++ +  + S                       + 
Sbjct: 171 PEE------------ILQYSEIHDNPQISEEDIRS-----------------------LP 195

Query: 277 GANLREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSR 336
             +L+ V    L +W ++ +G K+++  Y    C  C EV VGP GHK R+C   K++S 
Sbjct: 196 AGDLKYVGANALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESW 255

Query: 337 DGMHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQY 396
            G H W++A ++DLV    VWH +  +   L +  + YYG APA+V LC H GA VP +Y
Sbjct: 256 RGTHYWEKAGVNDLVPEKMVWHRRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKY 315

Query: 397 RSMMR 401
              M+
Sbjct: 316 ACKMK 320

May be involved in the stable assembly of several 4Fe-4S cluster-containing complexes of mitochondria.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
359491644	418	PREDICTED: APO protein 3, mitochondrial-	0.992	0.988	0.726	1e-177
255540051	414	translation factor sui1, putative [Ricin	0.985	0.990	0.692	1e-168
356498974	427	PREDICTED: APO protein 3, mitochondrial-	0.894	0.871	0.713	1e-157
357491037	571	Cytochrome P450 [Medicago truncatula] gi	0.956	0.697	0.670	1e-156
449449058	483	PREDICTED: APO protein 3, mitochondrial-	0.899	0.774	0.681	1e-153
79544352	402	APO protein 3 [Arabidopsis thaliana] gi|	0.951	0.985	0.623	1e-148
297797155	400	hypothetical protein ARALYDRAFT_496364 [	0.944	0.982	0.629	1e-147
224134160	340	predicted protein [Populus trichocarpa]	0.814	0.997	0.722	1e-145
356551894	430	PREDICTED: LOW QUALITY PROTEIN: APO prot	0.894	0.865	0.640	1e-141
13899117	340	Unknown protein [Arabidopsis thaliana] g	0.814	0.997	0.651	1e-133

>gi|359491644|ref|XP_002280903.2| PREDICTED: APO protein 3, mitochondrial-like [Vitis vinifera] gi|297733881|emb|CBI15128.3| unnamed protein product [Vitis vinifera]

 Score =  625 bits (1613), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 306/421 (72%), Positives = 353/421 (83%), Gaps = 8/421 (1%)

Query: 1   MQRRILSQISQSAKLNFRFTQNFFLFSSNETQSPNLNGGG-DDPLYSDVPKPRRDKSERK 59
           MQRRI+SQ S S +++ + +  FF F+S  T +  L G G DDPLY+DVP+P R KSERK
Sbjct: 1   MQRRIISQFSYSKRVHCQLSPIFF-FASRRTLT--LGGEGVDDPLYADVPRPCRRKSERK 57

Query: 60  PYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLS 119
           PYPTPMK+LIRRAKEE+E+RKA+P ++LE PP NGLLVPEL+ VAHQVY+A+ SLL GL 
Sbjct: 58  PYPTPMKILIRRAKEEKEARKAQPSRVLEDPPDNGLLVPELIGVAHQVYQAQQSLLLGLR 117

Query: 120 KLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHL 179
           KLI  IPVQRCRFC EVHIGH+GHEIRTCTGPKSGFRS+ HVWRKG V DAV+FPKCFHL
Sbjct: 118 KLIDVIPVQRCRFCFEVHIGHMGHEIRTCTGPKSGFRSSKHVWRKGRVEDAVYFPKCFHL 177

Query: 180 HDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVV 239
            DRVGK RVVHDER ++ RIPAI+ELCIQAGVD+EKYPTKRR +PVY +EGRIVDFE   
Sbjct: 178 CDRVGKPRVVHDERFNIKRIPAILELCIQAGVDLEKYPTKRRARPVYCIEGRIVDFEPET 237

Query: 240 ENDEMEKHVLDSYLGAKIDEMERSSKCER----MDQSNDVEGANLREVSIRTLASWFEMI 295
           E DEM ++V  S LG K +EMER+S        +  SN+ E  +L+E+S  TL SWFEMI
Sbjct: 238 EKDEMRRNVEASDLGTKTEEMERNSNSHNPSHFLTHSNNGEEKSLKELSTTTLESWFEMI 297

Query: 296 SGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNY 355
           SGAK++MEKY+V TCGYCPEVQVGPKGHKVRMCKASKHQSR+G+HAWQEAT+DDLVGPNY
Sbjct: 298 SGAKKIMEKYSVKTCGYCPEVQVGPKGHKVRMCKASKHQSRNGLHAWQEATIDDLVGPNY 357

Query: 356 VWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLV 415
           VWHVQD N PAL+N+LKRYYGKAPAVVELCV GGA +PDQYRSMMRLDVVPP+RDEVDLV
Sbjct: 358 VWHVQDQNRPALDNSLKRYYGKAPAVVELCVQGGASIPDQYRSMMRLDVVPPDRDEVDLV 417

Query: 416 A 416
           A
Sbjct: 418 A 418

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255540051|ref|XP_002511090.1| translation factor sui1, putative [Ricinus communis] gi|223550205|gb|EEF51692.1| translation factor sui1, putative [Ricinus communis]

 Score =  598 bits (1541), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 291/420 (69%), Positives = 342/420 (81%), Gaps = 10/420 (2%)

Query: 1   MQRRILSQISQSAKLNFRFTQNFFLFSSNETQSPNLNGGGDDPLYSDVPKPRRDKSERKP 60
           MQ+R++       +L+    Q+   FSS  + +  +    D+PLY+D+PKPRRD SERKP
Sbjct: 1   MQKRLICDRMLLKRLHSCLNQSL-CFSSGRSLT-LIGAQADNPLYADIPKPRRDTSERKP 58

Query: 61  YPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSK 120
           YPTP+KVLI+RAK+ERE+RK +P ++LEHPP NGLLVPELV VAH+VYRAR SLL+GLSK
Sbjct: 59  YPTPIKVLIQRAKQEREARKVQPCRVLEHPPDNGLLVPELVEVAHRVYRARQSLLFGLSK 118

Query: 121 LIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLH 180
           L++ +PVQRCRFCSEVHIGHVGHEIRTCTGP SG R+ATHVWR+GGV D VFFPKCFHL+
Sbjct: 119 LVKVVPVQRCRFCSEVHIGHVGHEIRTCTGPGSGKRTATHVWREGGVHDVVFFPKCFHLY 178

Query: 181 DRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVE 240
           DRVGK RV HDERHSVPRIPAI+ELCIQAGV+++K+PT+RRTKPVYS+EGRIVDFE V  
Sbjct: 179 DRVGKPRVGHDERHSVPRIPAILELCIQAGVNLDKFPTRRRTKPVYSIEGRIVDFEQVAN 238

Query: 241 NDEMEKHVLDSYLGAKIDEMERSSKCERMDQSND---VEGAN-LREVSIRTLASWFEMIS 296
             +M     + +    ID +   S   R D+      +E +N L +VSI T+ SWFEMIS
Sbjct: 239 KYDMS----EKFHSENIDPLVDYSSGTRDDKVTTHLKLEVSNELGDVSIGTMESWFEMIS 294

Query: 297 GAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYV 356
           GAK +MEKY+V TCGYCPEVQVGPKGHKVRMCK +KHQ+RDG HAWQEAT++DLVGPNYV
Sbjct: 295 GAKNIMEKYSVLTCGYCPEVQVGPKGHKVRMCKGTKHQARDGQHAWQEATIEDLVGPNYV 354

Query: 357 WHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLVA 416
           WHVQD+NGP L+N LKRYYGKAPAVVELCVH GAPVPDQYRSMMRLDVVPP RDEVDLVA
Sbjct: 355 WHVQDVNGPPLDNNLKRYYGKAPAVVELCVHAGAPVPDQYRSMMRLDVVPPNRDEVDLVA 414

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498974|ref|XP_003518320.1| PREDICTED: APO protein 3, mitochondrial-like [Glycine max]

 Score =  561 bits (1447), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 274/384 (71%), Positives = 315/384 (82%), Gaps = 12/384 (3%)

Query: 45  YSDVPKPRRDKSERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVA 104
           YSDVPKP+R  SERKPY TPMK LI RAK ERE+RKA+P ++LE PP NGLLVPELV VA
Sbjct: 44  YSDVPKPKRRNSERKPYVTPMKALIERAKAEREARKAQPCRVLEEPPENGLLVPELVEVA 103

Query: 105 HQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRK 164
            +VY+AR SLL+GLS+L++ IPV RCR C+EVHIG++GHEIRTCTGP+S  R+A HVW +
Sbjct: 104 RRVYQARGSLLFGLSQLVRVIPVLRCRLCNEVHIGYIGHEIRTCTGPESFSRNAMHVWTR 163

Query: 165 GGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKP 224
           GGV D VFFPKCFHL+DRVGK RV HDER SVPRIPAIVELCIQAG+D+EKYPTKRRTKP
Sbjct: 164 GGVQDVVFFPKCFHLYDRVGKPRVGHDERFSVPRIPAIVELCIQAGLDLEKYPTKRRTKP 223

Query: 225 VYSVEGRIVDFESVVENDEMEK-HVLD---------SYLGAKIDEME--RSSKCERMDQS 272
           VY +EGRIVDFESVV+ DE E+ H  +         S L   I++++    +    +DQ 
Sbjct: 224 VYCIEGRIVDFESVVKEDETERQHFFENDKPFVNSSSMLTQPIEKVQILLENNISHLDQL 283

Query: 273 NDVEGANLREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASK 332
           +D E   LR++S  TL SW EM SGAK++MEKYTV TCGYCPEVQVGPKGHK+RMCKASK
Sbjct: 284 SDEERNKLRDLSKHTLDSWIEMTSGAKKIMEKYTVNTCGYCPEVQVGPKGHKLRMCKASK 343

Query: 333 HQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPV 392
           HQSR+G+HAWQEAT+DDLV PNYVWHV+DLNGPAL N LKRYYGKAPAVVELCVH G PV
Sbjct: 344 HQSRNGLHAWQEATLDDLVIPNYVWHVEDLNGPALNNNLKRYYGKAPAVVELCVHSGTPV 403

Query: 393 PDQYRSMMRLDVVPPERDEVDLVA 416
           PDQY SMMRLDVV P+RDEVDLVA
Sbjct: 404 PDQYSSMMRLDVVSPDRDEVDLVA 427

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491037|ref|XP_003615806.1| Cytochrome P450 [Medicago truncatula] gi|355517141|gb|AES98764.1| Cytochrome P450 [Medicago truncatula]

 Score =  559 bits (1440), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 277/413 (67%), Positives = 323/413 (78%), Gaps = 15/413 (3%)

Query: 15  LNFRFTQNFFLFSSNETQSPNLNGGGDDPLYSDVPKPRRDKSERKPYPTPMKVLIRRAKE 74
           L+ R T      S     SP+ +       YSDVP P R KSERKPY TPMKVLI RAK 
Sbjct: 16  LSHRLTATLPFTSGTCPDSPDPDNAFP---YSDVPNPSRIKSERKPYVTPMKVLIARAKA 72

Query: 75  ERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCS 134
           ERE+RKA+P ++LE  P NGLLVPELV VA +VY+AR  LL GL +L++ IPV RC FC+
Sbjct: 73  EREARKAQPCRVLEEAPENGLLVPELVEVARRVYQARGFLLSGLKQLVRVIPVLRCEFCN 132

Query: 135 EVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERH 194
           EVHIG+VGHEIRTCTGPKS  RSATHVW++GGV D V FPKCFHL+DRVGK RV HDER 
Sbjct: 133 EVHIGYVGHEIRTCTGPKSWLRSATHVWKRGGVQDVVCFPKCFHLYDRVGKPRVGHDERF 192

Query: 195 SVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKH------- 247
           SVPRIPAI+ELCIQAG+D++K+PTKRRTKPVY +EGRI DFESV E++E+E++       
Sbjct: 193 SVPRIPAIIELCIQAGLDLKKFPTKRRTKPVYCIEGRIADFESVAEDNEIERNSSFENVN 252

Query: 248 --VLDSYLGAKIDEMERS---SKCERMDQSNDVEGANLREVSIRTLASWFEMISGAKEMM 302
                SY+  +  E  +S   +K   MDQ +D E   LR++S   L SWFEMISGAK++M
Sbjct: 253 PLTDSSYMLKEPVEKVQSLLENKISHMDQLSDEERNKLRDLSKHALDSWFEMISGAKKIM 312

Query: 303 EKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDL 362
           EKY V TCGYCPEVQVGPKGHK+RMCKASKHQSR+G+HAWQEAT+DD+VGPN+VWHV+DL
Sbjct: 313 EKYVVNTCGYCPEVQVGPKGHKLRMCKASKHQSRNGLHAWQEATLDDIVGPNFVWHVEDL 372

Query: 363 NGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLV 415
           NGPAL N +KRYYGKAPAVVELCVH GAPVPDQY+SMMRLDVV PERDEVDLV
Sbjct: 373 NGPALNNNIKRYYGKAPAVVELCVHAGAPVPDQYKSMMRLDVVSPERDEVDLV 425

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449449058|ref|XP_004142282.1| PREDICTED: APO protein 3, mitochondrial-like [Cucumis sativus]

 Score =  546 bits (1408), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 263/386 (68%), Positives = 315/386 (81%), Gaps = 12/386 (3%)

Query: 42  DPLYSDVPKPRRDKSERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELV 101
           DP Y D+PKPR  +S RKPYPTPMKVLI+RAKEER +RKA+P +++E+PP NGLLVP+LV
Sbjct: 99  DPPYVDLPKPRVCESSRKPYPTPMKVLIQRAKEERVARKAQPCRMVEYPPDNGLLVPDLV 158

Query: 102 SVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHV 161
            VA  VY A   L +G+S+L++ +P+QRCRFC EVHIGHVGHEIRTCTG KSGFRSATH+
Sbjct: 159 HVAQSVYLAWKMLHFGISRLLKAVPIQRCRFCFEVHIGHVGHEIRTCTGEKSGFRSATHI 218

Query: 162 WRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRR 221
           WRKG V D VFFPKC+HL+DRV K RV HDERH +PRIPAI+ELCIQAGVD+EKYP+KRR
Sbjct: 219 WRKGRVQDVVFFPKCYHLYDRVVKPRVGHDERHDIPRIPAILELCIQAGVDLEKYPSKRR 278

Query: 222 TKPVYSVEGRIVDFESVVENDEMEKHV--------LDSYLGAKIDEMERSSK---CERMD 270
           TKPVY++EGRIVDFESV E +E++  V        + S  G +++   +SS       +D
Sbjct: 279 TKPVYNIEGRIVDFESVKEMNEVKTGVSTKISDNFVKSDFGIELEGTSKSSLEKFSNTLD 338

Query: 271 QSNDVEGANLREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKA 330
           Q  +V+   +R++SI+TL SW EM+SGAK++MEKY V TCGYCPEVQVGPKGHKVRMC+A
Sbjct: 339 QQYEVD-TEVRQLSIQTLDSWLEMVSGAKKIMEKYMVQTCGYCPEVQVGPKGHKVRMCRA 397

Query: 331 SKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGA 390
           SKHQSR+G+HAWQEAT+DDLVGPNYVWH +DL  P L+N LKRYYGK PAVVELCV  GA
Sbjct: 398 SKHQSRNGLHAWQEATIDDLVGPNYVWHGRDLKAPPLDNKLKRYYGKVPAVVELCVQAGA 457

Query: 391 PVPDQYRSMMRLDVVPPERDEVDLVA 416
           P+PDQYRSMMRLDVV P+ DEVDLVA
Sbjct: 458 PIPDQYRSMMRLDVVCPDSDEVDLVA 483

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79544352|ref|NP_568945.2| APO protein 3 [Arabidopsis thaliana] gi|186532654|ref|NP_001119475.1| APO protein 3 [Arabidopsis thaliana] gi|68565076|sp|Q9FH50.1|APO3_ARATH RecName: Full=APO protein 3, mitochondrial; Flags: Precursor gi|9758392|dbj|BAB08879.1| unnamed protein product [Arabidopsis thaliana] gi|332010155|gb|AED97538.1| APO protein 3 [Arabidopsis thaliana] gi|332010156|gb|AED97539.1| APO protein 3 [Arabidopsis thaliana]

 Score =  532 bits (1370), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 263/422 (62%), Positives = 318/422 (75%), Gaps = 26/422 (6%)

Query: 1   MQRRILSQISQSAKLNFRFTQNFFLFSSNETQSPNLN-----GGGDDPLYSDVPKPRRDK 55
           MQRR L +IS        F      FSS+     NL+        +DPLY+DVPKP +DK
Sbjct: 1   MQRRKLVEISI-------FVIRKSNFSSSIKSLTNLDVDVSVDNDEDPLYADVPKPPKDK 53

Query: 56  SERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLL 115
           SERKPYPTPMK LIRRAKEE++ RK +P ++LE PP NGLLVPELV VAH V+R R  LL
Sbjct: 54  SERKPYPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLVPELVDVAHCVHRCRNMLL 113

Query: 116 YGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPK 175
            GLSK+I  +PV RCR C+EVHIG  GHEIRTCTGP SG RSATHVW++G V D V FPK
Sbjct: 114 SGLSKIIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLFPK 173

Query: 176 CFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDF 235
           CFHL+DR  K RV+HDER +VP+I A++ELCIQAGVD+EK+P+KRR+KPVYS+EGRIVDF
Sbjct: 174 CFHLYDRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKRRSKPVYSIEGRIVDF 233

Query: 236 ESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLASWFEMI 295
           E V  ND   +  + S        ++   +C+        E  +L+E+S  T+ SWFEM+
Sbjct: 234 EDV--NDGNSELAVTSTTTL----IQEDDRCKE-------EKKSLKELSFETMESWFEMV 280

Query: 296 SGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNY 355
            G +++ME+Y VWTCGYCPE+QVGPKGHKVRMCKA+KHQ RDGMHAWQEAT+DD+VGP Y
Sbjct: 281 LGVRKLMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATIDDVVGPTY 340

Query: 356 VWHVQD-LNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDL 414
           VWHV+D  +G  L+N+LKR+YGKAPAV+E+CV GGAPVPDQY SMMRLDVV P+RDEVDL
Sbjct: 341 VWHVRDPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYPQRDEVDL 400

Query: 415 VA 416
           VA
Sbjct: 401 VA 402

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797155|ref|XP_002866462.1| hypothetical protein ARALYDRAFT_496364 [Arabidopsis lyrata subsp. lyrata] gi|297312297|gb|EFH42721.1| hypothetical protein ARALYDRAFT_496364 [Arabidopsis lyrata subsp. lyrata]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 260/413 (62%), Positives = 315/413 (76%), Gaps = 20/413 (4%)

Query: 11  QSAKLNFRFTQNFFLFSSNETQSPNLNGGGDD-----PLYSDVPKPRRDKSERKPYPTPM 65
           + A  N R       FSS+     NL+          PLY+DVPKPR+DKSERKPYPTPM
Sbjct: 1   KKASANLRLRNQKISFSSSIKPLTNLDVDVSVVDDDDPLYADVPKPRKDKSERKPYPTPM 60

Query: 66  KVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQFI 125
           K LIRRAKEE++ RK +P ++LE PP NG+LVPELV VAH V+R R SLL GLSK+I  +
Sbjct: 61  KELIRRAKEEKQLRKLQPCRVLEDPPDNGILVPELVDVAHCVHRCRNSLLSGLSKIIHHV 120

Query: 126 PVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGK 185
           PV RCR CSEVHIG  GHEIRTCTGP SG RSATHVW++G   D V FPKCFHL+DR  K
Sbjct: 121 PVHRCRLCSEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRASDVVLFPKCFHLYDRAVK 180

Query: 186 ARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESV-VENDEM 244
            RV+HDER +VP+I A++ELCIQAGVD+EK+P+KRR+KPVYS+EGRIVDFE V  EN E+
Sbjct: 181 PRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKRRSKPVYSIEGRIVDFEDVNCENSEI 240

Query: 245 EKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLASWFEMISGAKEMMEK 304
                 + L             +  D   + +  +L+E+SI T+ SWFEM+SG ++++E+
Sbjct: 241 AVTSTTTLL-------------QEDDCCKEEKKKSLKELSIETMESWFEMVSGVRKLIER 287

Query: 305 YTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQD-LN 363
           Y VWTCGYCPE+QVGPKGHKVRMCKA+KHQ RDGMHAWQEAT+DD+VGPNYVWHV+D  +
Sbjct: 288 YKVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATIDDVVGPNYVWHVRDPTD 347

Query: 364 GPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLVA 416
           G  L+N+LKR+YGKAPAVVE+CV GGAP+PDQY+SMMRLDVV P+RDEVDLVA
Sbjct: 348 GSVLDNSLKRFYGKAPAVVEMCVQGGAPIPDQYKSMMRLDVVYPQRDEVDLVA 400

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134160|ref|XP_002321751.1| predicted protein [Populus trichocarpa] gi|222868747|gb|EEF05878.1| predicted protein [Populus trichocarpa]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 255/353 (72%), Positives = 292/353 (82%), Gaps = 14/353 (3%)

Query: 65  MKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQF 124
           MK+LI+RAKEE+E+RK +P ++LE+PP NGLLVP+LV VA+QVY AR  LL G+SKL++ 
Sbjct: 1   MKMLIKRAKEEKEARKLQPCRMLENPPDNGLLVPQLVPVAYQVYEAREVLLSGVSKLVKV 60

Query: 125 IPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVG 184
           IPVQ+CRFC E+HIGHVGHEIRTCTGP SG RS+THVWRKG V D VF PK +HL+DRVG
Sbjct: 61  IPVQKCRFCHELHIGHVGHEIRTCTGPGSGMRSSTHVWRKGRVHDVVFSPKSYHLYDRVG 120

Query: 185 KARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEM 244
           K RVVHDE   VPRIPAIVELCIQAGVD+EK+PTKRRTKPVYS+EGRIVDFE   ENDE 
Sbjct: 121 KPRVVHDESRRVPRIPAIVELCIQAGVDLEKHPTKRRTKPVYSIEGRIVDFEQAKENDEN 180

Query: 245 EKHVLDSYLGAKIDEMERSSKCERMDQSNDVEG-ANLREVSIRTLASWFEMISGAKEMME 303
           E    +  L  + D++E S            EG  +LRE+SI T+ SWF+MISGAK++ME
Sbjct: 181 EPR--NFILDKETDQLEESH-----------EGVTDLREISIGTMESWFKMISGAKKIME 227

Query: 304 KYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLN 363
           KY V TCGYCPEVQVGPKGHKVRMCKA+KHQ RDG+HAWQEAT+DDLV PNYVWHV+D N
Sbjct: 228 KYGVLTCGYCPEVQVGPKGHKVRMCKATKHQHRDGLHAWQEATIDDLVAPNYVWHVRDTN 287

Query: 364 GPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLVA 416
           G  L+N LKRYYGKAPAVVELCV  GAPVPDQYRSMMRLDVVPP+RDEVDLVA
Sbjct: 288 GLPLDNKLKRYYGKAPAVVELCVQAGAPVPDQYRSMMRLDVVPPDRDEVDLVA 340

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551894|ref|XP_003544307.1| PREDICTED: LOW QUALITY PROTEIN: APO protein 3, mitochondrial-like [Glycine max]

 Score =  508 bits (1308), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 248/387 (64%), Positives = 295/387 (76%), Gaps = 15/387 (3%)

Query: 45  YSDVPKPRRDKSERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVA 104
           YSDVP+PRR  SE KPY TPMK LI R K E+E RKA+P ++LE PP NGLLVPELV VA
Sbjct: 44  YSDVPRPRRRNSEWKPYVTPMKALIERVKAEKEVRKAQPRRVLEEPPENGLLVPELVEVA 103

Query: 105 HQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRK 164
            +VY A  SLL+ LS+L++ IPV RCR C+EVHIG+VGHEI+TCTGP+S  R+A H+W +
Sbjct: 104 RRVYEACGSLLFSLSQLVRVIPVLRCRLCNEVHIGYVGHEIQTCTGPESFLRNAMHIWTR 163

Query: 165 GGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKP 224
           GGV D +FFPKCFHL+DRVGK RV HDER  VP IPAI+ELCIQAG+D+EKYPTKRRTKP
Sbjct: 164 GGVXDVIFFPKCFHLYDRVGKPRVGHDERFGVPCIPAIIELCIQAGLDLEKYPTKRRTKP 223

Query: 225 VYSVEGRIVDFESVVENDEMEKHV----------LDSYLGAKIDEM-----ERSSKCERM 269
           VY +EGRIVDFESVV+ DE E+              S L   ++++        +    +
Sbjct: 224 VYCIEGRIVDFESVVKEDETERQCSFENDKPIVNSSSMLSRPVEKVHNLLENNMNNISHL 283

Query: 270 DQSNDVEGANLREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCK 329
           DQ +D E + LR++S  TL SW EM SG K++MEKY+V TCGYCPEVQVGPK HK+RMCK
Sbjct: 284 DQLSDEERSKLRDLSKHTLDSWIEMTSGTKKIMEKYSVNTCGYCPEVQVGPKEHKLRMCK 343

Query: 330 ASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGG 389
           AS HQSR+G+HA QEAT++DLV PNYVWHV+  NGPAL N LKRYYGKAPA+VE CVH G
Sbjct: 344 ASNHQSRNGLHAXQEATLNDLVDPNYVWHVEYQNGPALNNNLKRYYGKAPALVEXCVHAG 403

Query: 390 APVPDQYRSMMRLDVVPPERDEVDLVA 416
           A VPDQY  MMR+ VV P+RDEVDLV 
Sbjct: 404 ALVPDQYSCMMRVVVVSPDRDEVDLVT 430

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13899117|gb|AAK48980.1|AF370553_1 Unknown protein [Arabidopsis thaliana] gi|25083634|gb|AAN72097.1| Unknown protein [Arabidopsis thaliana]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 230/353 (65%), Positives = 279/353 (79%), Gaps = 14/353 (3%)

Query: 65  MKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQF 124
           MK LIRRAKEE++ RK +P ++LE PP NGLLVPELV VAH V+R R  LL GLSK+I  
Sbjct: 1   MKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLVPELVDVAHCVHRCRNMLLSGLSKIIHH 60

Query: 125 IPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVG 184
           +PV RCR C+EVHIG  GHEIRTCTGP SG RSATHVW++G V D V FPKCFHL+DR  
Sbjct: 61  VPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLFPKCFHLYDRAV 120

Query: 185 KARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEM 244
           K RV+HDER +VP+I A++ELCIQAGVD+EK+P+KRR+KPVYS+EGRIVDFE V  ND  
Sbjct: 121 KPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKRRSKPVYSIEGRIVDFEDV--NDGN 178

Query: 245 EKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLASWFEMISGAKEMMEK 304
            +  + S        ++   +C+        E  +L+E+S  T+ SWFEM+ G +++ME+
Sbjct: 179 SELAVTSTTTL----IQEDDRCKE-------EKKSLKELSFETMESWFEMVLGVRKLMER 227

Query: 305 YTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQD-LN 363
           Y VWTCGYCPE+QVGPKGHKVRMCKA+KHQ RDGMHAWQEAT+DD+VGP YVWHV+D  +
Sbjct: 228 YRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATIDDVVGPTYVWHVRDPTD 287

Query: 364 GPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLVA 416
           G  L+N+LKR+YGKAPAV+E+CV GGAPVPDQY SMMRLDVV P+RDEVDLVA
Sbjct: 288 GSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYPQRDEVDLVA 340

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	416
TAIR|locus:2156151	402	APO3 "ACCUMULATION OF PHOTOSYS	0.963	0.997	0.609	1.1e-133
TAIR|locus:2010906	460	APO1 "ACCUMULATION OF PHOTOSYS	0.870	0.786	0.416	1.6e-77
TAIR|locus:2093069	337	APO4 "AT3G21740" [Arabidopsis	0.295	0.364	0.390	8.7e-42

TAIR|locus:2156151 APO3 "ACCUMULATION OF PHOTOSYSTEM ONE 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 1310 (466.2 bits), Expect = 1.1e-133, P = 1.1e-133
 Identities = 254/417 (60%), Positives = 307/417 (73%)

Query:     1 MQRRILSQISQSAKLNFRFTQNFFLFSSNETQSPNLNGGGDDPLYSDVPKPRRDKSERKP 60
             MQRR L +IS        F+ +    ++ +      N   +DPLY+DVPKP +DKSERKP
Sbjct:     1 MQRRKLVEISIFVIRKSNFSSSIKSLTNLDVDVSVDND--EDPLYADVPKPPKDKSERKP 58

Query:    61 YPTPMKVLIXXXXXXXXXXXXXPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSK 120
             YPTPMK LI             P ++LE PP NGLLVPELV VAH V+R R  LL GLSK
Sbjct:    59 YPTPMKELIRRAKEEKQLRKLQPCRVLEDPPDNGLLVPELVDVAHCVHRCRNMLLSGLSK 118

Query:   121 LIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLH 180
             +I  +PV RCR C+EVHIG  GHEIRTCTGP SG RSATHVW++G V D V FPKCFHL+
Sbjct:   119 IIHHVPVHRCRLCAEVHIGKQGHEIRTCTGPGSGSRSATHVWKRGRVSDVVLFPKCFHLY 178

Query:   181 DRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVE 240
             DR  K RV+HDER +VP+I A++ELCIQAGVD+EK+P+KRR+KPVYS+EGRIVDFE V  
Sbjct:   179 DRAVKPRVIHDERFTVPKISAVLELCIQAGVDLEKFPSKRRSKPVYSIEGRIVDFEDV-- 236

Query:   241 NDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLASWFEMISGAKE 300
             ND   +  + S     I E +R   C+        E  +L+E+S  T+ SWFEM+ G ++
Sbjct:   237 NDGNSELAVTSTT-TLIQEDDR---CKE-------EKKSLKELSFETMESWFEMVLGVRK 285

Query:   301 MMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQ 360
             +ME+Y VWTCGYCPE+QVGPKGHKVRMCKA+KHQ RDGMHAWQEAT+DD+VGP YVWHV+
Sbjct:   286 LMERYRVWTCGYCPEIQVGPKGHKVRMCKATKHQMRDGMHAWQEATIDDVVGPTYVWHVR 345

Query:   361 D-LNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLVA 416
             D  +G  L+N+LKR+YGKAPAV+E+CV GGAPVPDQY SMMRLDVV P+RDEVDLVA
Sbjct:   346 DPTDGSVLDNSLKRFYGKAPAVIEMCVQGGAPVPDQYNSMMRLDVVYPQRDEVDLVA 402

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2010906 APO1 "ACCUMULATION OF PHOTOSYSTEM ONE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 780 (279.6 bits), Expect = 1.6e-77, P = 1.6e-77
 Identities = 154/370 (41%), Positives = 224/370 (60%)

Query:    47 DVPKPRRDKSERKPYPTPMKVLIXXXXXXXXXXXXXPVKLLEHPPGNGLLVPELVSVAHQ 106
             D+P P   K+++KPYP P K +                K L+ PP NGLLVP LV VA Q
Sbjct:    99 DLP-PILPKNKKKPYPIPFKQIQEEARKDKKLAQMGIEKQLD-PPKNGLLVPNLVPVADQ 156

Query:   107 VYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGG 166
             V      L+ GL++L+  +PV  C  C  VH+ +VGH IR C GP +  R  +H W KG 
Sbjct:   157 VIDNWKLLIKGLAQLLHVVPVFACSECGAVHVANVGHNIRDCNGPTNSQRRGSHSWVKGT 216

Query:   167 VGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVY 226
             + D +   + +H++D  G+ R+ H+ R    RIPA+VELCIQAGV+I +YP +RRT+P+ 
Sbjct:   217 INDVLIPVESYHMYDPFGR-RIKHETRFEYERIPALVELCIQAGVEIPEYPCRRRTQPIR 275

Query:   227 SVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIR 286
              +  R++D      + E EK    S L + + E++     ER       +   + +++  
Sbjct:   276 MMGKRVIDRGGY--HKEPEKPQTSSSLSSPLAELDTLGVFERYPPPTPED---IPKIAQE 330

Query:   287 TLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEAT 346
             T+ ++ ++  G  ++M K+TV  CGYC EV VGP GH V++C   KHQ RDG H WQ+A 
Sbjct:   331 TMDAYEKVRLGVTKLMRKFTVKACGYCSEVHVGPWGHSVKLCGEFKHQWRDGKHGWQDAL 390

Query:   347 MDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVP 406
             +D++  PNYVWHV+DL G  L   L+R+YGKAPA+VE+C+H GA VP +Y++MMRLD++ 
Sbjct:   391 VDEVFPPNYVWHVRDLKGNPLTGNLRRFYGKAPALVEICMHSGARVPQRYKAMMRLDIIV 450

Query:   407 PERDEVDLVA 416
             P+  E D+VA
Sbjct:   451 PDSQEADMVA 460

GO:0005739 "mitochondrion" evidence=ISM

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009658 "chloroplast organization" evidence=IMP

GO:0015979 "photosynthesis" evidence=IMP

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0010468 "regulation of gene expression" evidence=IMP

TAIR|locus:2093069 APO4 "AT3G21740" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 8.7e-42, Sum P(2) = 8.7e-42
 Identities = 48/123 (39%), Positives = 71/123 (57%)

Query:   279 NLREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDG 338
             +L+ V    L +W ++ +G K+++  Y    C  C EV VGP GHK R+C   K++S  G
Sbjct:   198 DLKYVGANALMAWEKVRAGVKKLLLVYPSKVCKRCKEVHVGPSGHKARLCGVFKYESWRG 257

Query:   339 MHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRS 398
              H W++A ++DLV    VWH +  +   L +  + YYG APA+V LC H GA VP +Y  
Sbjct:   258 THYWEKAGVNDLVPEKMVWHRRPQDPVVLVDEGRSYYGHAPAIVSLCSHTGAIVPVKYAC 317

Query:   399 MMR 401
              M+
Sbjct:   318 KMK 320

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FH50	APO3_ARATH	No assigned EC number	0.6232	0.9519	0.9850	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016212001 SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (406 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	416
PLN00111	399	PLN00111, PLN00111, accumulation of photosystem on	0.0
pfam05634	207	pfam05634, APO_RNA-bind, APO RNA-binding	8e-91
pfam05634	207	pfam05634, APO_RNA-bind, APO RNA-binding	8e-18

>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional

 Score =  585 bits (1511), Expect = 0.0
 Identities = 219/413 (53%), Positives = 275/413 (66%), Gaps = 14/413 (3%)

Query: 4   RILSQISQSAKLNFRFTQNFFLFSSNETQSPNLNGGGDDPLYSDVPKPRRDKSERKPYPT 63
            + S I    KL    +  F   S    +  +     + P  +D+P+P   K E+KPYP 
Sbjct: 1   LLPSSIPSLRKLKLSLS--FRCSSQLHRRKLSSVIRSEYPQNADLPRPYS-KREKKPYPR 57

Query: 64  PMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQ 123
           PMK+L R A+E+++ RK +P + L  PP NGLLV  LV VAH+VY+AR  L+ G+SKL++
Sbjct: 58  PMKLLRREAREKKKLRKLQPERPL-DPPKNGLLVKRLVPVAHEVYKARKLLISGVSKLLK 116

Query: 124 FIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRV 183
            +PV  C+FCSEVH+G VGH IRTC GP SG R+  H W  G V D +   + +HL+DR 
Sbjct: 117 VVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRF 176

Query: 184 GKARVVHDERHSVPRIPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDE 243
           GK R+ HDER  VPRIPAIVELCIQAGVDI +YPTKRRTKP+Y + GRIVDFE   E  +
Sbjct: 177 GK-RIKHDERFDVPRIPAIVELCIQAGVDIPEYPTKRRTKPIYRIGGRIVDFEDESEEPD 235

Query: 244 MEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLASWFEMISGAKEMME 303
                  S L  ++D+ E  +     +         L+E++  TL +W ++ SG K++M 
Sbjct: 236 PPPEGPSSPLLTELDDSEIEAPSSEEE---------LKELAEETLEAWEKVRSGVKKLMR 286

Query: 304 KYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLN 363
           KY V  CGYCPEV VGP GHKVR+C A KHQ RDG H WQEAT+DDLV PNYVWHV+D +
Sbjct: 287 KYPVKVCGYCPEVHVGPSGHKVRLCGAFKHQQRDGQHGWQEATVDDLVPPNYVWHVRDQD 346

Query: 364 GPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLVA 416
           GP L N L+RYYGKAPAVVELCV  GA VPD+Y+SMMRLDVV P+ DE DLVA
Sbjct: 347 GPPLVNELRRYYGKAPAVVELCVQAGAIVPDKYKSMMRLDVVIPDSDEADLVA 399

Length = 399

>gnl|CDD|218667 pfam05634, APO_RNA-bind, APO RNA-binding

 Score =  272 bits (698), Expect = 8e-91
 Identities = 113/210 (53%), Positives = 147/210 (70%), Gaps = 3/210 (1%)

Query: 25  LFSSNETQSPNLNGGGDDPLYSDVPKPRRDKSERKPYPTPMKVLIRRAKEERESRKAEPV 84
           L S  E +        + P  +D+PKP   K E+KPYP P+K LIRRAKEE++ RK +P 
Sbjct: 1   LCSRQELRGSTSVQRNESPQNADLPKPYP-KREKKPYPMPLKRLIRRAKEEKKLRKMKPC 59

Query: 85  KLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLSKLIQFIPVQRCRFCSEVHIGHVGHE 144
           ++L +PP NGLLV ELV VA +V+ AR  L+ GLS+L++ +PV RC+FC EVH+G VGHE
Sbjct: 60  RVL-YPPKNGLLVKELVPVAEEVHNARELLIKGLSRLLKVVPVHRCKFCPEVHVGKVGHE 118

Query: 145 IRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRIPAIVE 204
           IRTC GP S  R+  H W  G + D +   + +HL+DR GK R+ HDER  VPR+PA++E
Sbjct: 119 IRTCKGPGSSQRNGLHEWVPGTINDVLVPVESYHLYDRFGK-RIKHDERFDVPRVPAVLE 177

Query: 205 LCIQAGVDIEKYPTKRRTKPVYSVEGRIVD 234
           LCIQAGVDI +YP KRRTKP+YS+   IVD
Sbjct: 178 LCIQAGVDIPEYPAKRRTKPIYSIGKEIVD 207

This domain contains conserved cysteine and histidine residues. It resembles zinc fingers, and binds to zinc. This domain functions as an RNA-binding domain. Length = 207

>gnl|CDD|218667 pfam05634, APO_RNA-bind, APO RNA-binding

 Score = 81.0 bits (200), Expect = 8e-18
 Identities = 35/116 (30%), Positives = 61/116 (52%)

Query: 279 NLREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDG 338
            L  V+     +   +I G   +++   V  C +CPEV VG  GH++R CK      R+G
Sbjct: 73  ELVPVAEEVHNARELLIKGLSRLLKVVPVHRCKFCPEVHVGKVGHEIRTCKGPGSSQRNG 132

Query: 339 MHAWQEATMDDLVGPNYVWHVQDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPD 394
           +H W   T++D++ P   +H+ D  G  +++  +    + PAV+ELC+  G  +P+
Sbjct: 133 LHEWVPGTINDVLVPVESYHLYDRFGKRIKHDERFDVPRVPAVLELCIQAGVDIPE 188

This domain contains conserved cysteine and histidine residues. It resembles zinc fingers, and binds to zinc. This domain functions as an RNA-binding domain. Length = 207

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	416
PLN00111	399	accumulation of photosystem one; Provisional	100.0
PF05634	204	APO_RNA-bind: APO RNA-binding; InterPro: IPR008512	100.0
PF05634	204	APO_RNA-bind: APO RNA-binding; InterPro: IPR008512	100.0
PLN00111	399	accumulation of photosystem one; Provisional	100.0

>PLN00111 accumulation of photosystem one; Provisional

Probab=100.00  E-value=4.5e-155  Score=1151.59  Aligned_cols=365  Identities=58%  Similarity=1.011  Sum_probs=357.8

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHhHH
Q 014882           40 GDDPLYSDVPKPRRDKSERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGLS  119 (416)
Q Consensus        40 ~~~~~~~d~P~~~~~k~ekKP~~~p~~~l~r~Are~~k~~~~~~~~~l~~pP~NGLLV~~LipVA~~V~~Ar~~L~~Gls  119 (416)
                      +++|||+|+||+++ |+|||||+|||++|+++||++++++|++|+++|+ ||+|||||++||||||+||+||++|++||+
T Consensus        35 ~~~~~~~d~pr~~~-k~ekkp~~~Pm~~l~~~aR~~~~~~~~~~~~~l~-pP~NGllV~~LvpvA~ev~~A~~~L~~Gv~  112 (399)
T PLN00111         35 SEYPQNADLPRPYS-KREKKPYPRPMKLLRREAREKKKLRKLQPERPLD-PPKNGLLVKRLVPVAHEVYKARKLLISGVS  112 (399)
T ss_pred             ccCCcccccCCCCC-chhcCCCCccHHHHHHHHHHHhhhhhcCCCccCC-CCccCccccccHHHHHHHHHHHHHHHHHHH
Confidence            88999999999999 9999999999999999999999999999999996 999999999999999999999999999999


Q ss_pred             hhhceeeeeccCCCCceeecCCCccccccCCCCCCCCCccccceecccCccccCCeeeeeccCCCCceecccccccCCCc
Q 014882          120 KLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPRI  199 (416)
Q Consensus       120 kLl~vvPV~aC~~C~EVHVG~~GH~irtC~g~~~~~R~g~H~W~~g~v~Dvlvpve~~Hl~D~~g~~~I~H~eRf~~~Ri  199 (416)
                      |||++|||++|+||+|||||++||+||||+|+++++|||+|+|++|+|||||+|+|+|||+|++|++ |.|++||+||||
T Consensus       113 kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~Dvl~P~e~~Hl~D~~g~~-i~h~~Rf~y~ri  191 (399)
T PLN00111        113 KLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRFGKR-IKHDERFDVPRI  191 (399)
T ss_pred             HhheEEeeeecCcCCceeECCCCccccccCCcccccccCccccccccccceeccceeeEeccCCCcc-cccccccccCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998 999999999999


Q ss_pred             hHHHHHHHHhCCCCCCCCCcccCCccccccceeecccccccchhhhhhccccccccchhhhhhhccccccccCCcccccc
Q 014882          200 PAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGAN  279 (416)
Q Consensus       200 PAVvELCiQAGvdipeyptkRr~~Pi~~i~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e  279 (416)
                      |||||||||||||||||||+||++|||+|+|+++||+++.++++++++...++++++.+.++..         ++.+++|
T Consensus       192 PAVvELCiQAGa~vPeyp~~Rr~~p~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~---------~~~~~~~  262 (399)
T PLN00111        192 PAIVELCIQAGVDIPEYPTKRRTKPIYRIGGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIE---------APSSEEE  262 (399)
T ss_pred             cHHHHHHHHcCCCCCccccccccccccccccccccccccccccccccccccccccccccccccc---------ccCchhH
Confidence            9999999999999999999999999999999999999999999999999999999888887644         2347889


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhheeecccCCCCCeeecCCCcccccccCcccccccCcccceecccCcccCCCceeee
Q 014882          280 LREVSIRTLASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHV  359 (416)
Q Consensus       280 Li~vA~evl~Aw~~L~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~C~g~k~q~R~g~H~W~~a~vdDvv~P~~vwHl  359 (416)
                      |++||++||+||+.|++||+|||++|||++|||||||||||+||++|+|+|||||+|||+|+||+|+|||||||+||||+
T Consensus       263 l~~vA~etl~Aw~~~~~Gv~~Lm~~y~V~~C~yC~EVhVGp~GHk~r~C~~~k~q~r~g~H~Wq~a~vdDlvpP~~vwH~  342 (399)
T PLN00111        263 LKELAEETLEAWEKVRSGVKKLMRKYPVKVCGYCPEVHVGPSGHKVRLCGAFKHQQRDGQHGWQEATVDDLVPPNYVWHV  342 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCceeECCCCceeeecCCchhcccCCcccccccccccccCCceeEec
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccccchhhhcCCCchhhhhhhhcCCCCCCcCccccccccCCCCCccccccC
Q 014882          360 QDLNGPALENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVPPERDEVDLVA  416 (416)
Q Consensus       360 ~d~~g~~l~he~R~~ygr~PAVVELCiQAGa~vP~~Y~s~mr~d~~~p~~~E~~~Va  416 (416)
                      +|++|++|.|++||||||||||||||+||||++|++|+||||+|+++|++||++|||
T Consensus       343 ~d~~~~~l~~e~r~~Yg~aPAVVELC~QAGA~vP~~Y~~mMRldv~~P~~~E~~lva  399 (399)
T PLN00111        343 RDQDGPPLVNELRRYYGKAPAVVELCVQAGAIVPDKYKSMMRLDVVIPDSDEADLVA  399 (399)
T ss_pred             CCCCCCcccccchhhcCccchHHHHHhhhCCCCChhhhhhhhccccCCCcchhhccC
Confidence            999999999999999999999999999999999999999999999999999999997

>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins

Probab=100.00  E-value=5.5e-90  Score=639.34  Aligned_cols=193  Identities=53%  Similarity=0.927  Sum_probs=190.7

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCcccchhHHHHHHHHHHHHHHHHhH
Q 014882           39 GGDDPLYSDVPKPRRDKSERKPYPTPMKVLIRRAKEERESRKAEPVKLLEHPPGNGLLVPELVSVAHQVYRARLSLLYGL  118 (416)
Q Consensus        39 ~~~~~~~~d~P~~~~~k~ekKP~~~p~~~l~r~Are~~k~~~~~~~~~l~~pP~NGLLV~~LipVA~~V~~Ar~~L~~Gl  118 (416)
                      .+++|||+|||++++ |+||||||||||+|+++||||+|++|++|+++|+ ||+|||||++|||||++||+||++|++||
T Consensus        12 ~~~~~~~~d~P~~~~-k~ekKp~p~p~k~l~~~are~~k~~~~~p~r~l~-pP~NGllV~~LvpvA~ev~~A~~~L~~Gv   89 (204)
T PF05634_consen   12 RNESPQNADLPRPLP-KSEKKPYPTPIKELIRRAREERKARQGQPERPLY-PPKNGLLVKELVPVAYEVLEAWETLISGV   89 (204)
T ss_pred             cccCCccccCCCcCC-ccccCCCCccHHHHHHHHHHHHHHhhcCCCCCCC-CCccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence            378999999999999 9999999999999999999999999999999997 99999999999999999999999999999


Q ss_pred             HhhhceeeeeccCCCCceeecCCCccccccCCCCCCCCCccccceecccCccccCCeeeeeccCCCCceecccccccCCC
Q 014882          119 SKLIQFIPVQRCRFCSEVHIGHVGHEIRTCTGPKSGFRSATHVWRKGGVGDAVFFPKCFHLHDRVGKARVVHDERHSVPR  198 (416)
Q Consensus       119 skLl~vvPV~aC~~C~EVHVG~~GH~irtC~g~~~~~R~g~H~W~~g~v~Dvlvpve~~Hl~D~~g~~~I~H~eRf~~~R  198 (416)
                      +|||++|||++|+||+|||||++||+||||+|+++++|+|+|+|++|+|||||+|+|+|||+|++|++ |.|++||+|||
T Consensus        90 ~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g~~-i~he~R~~y~r  168 (204)
T PF05634_consen   90 KKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFGPR-IKHEERFYYGR  168 (204)
T ss_pred             HHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCCCc-cccccccccCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999998 99999999999


Q ss_pred             chHHHHHHHHhCCCCCCCCCcccCCccccccceeec
Q 014882          199 IPAIVELCIQAGVDIEKYPTKRRTKPVYSVEGRIVD  234 (416)
Q Consensus       199 iPAVvELCiQAGvdipeyptkRr~~Pi~~i~~r~~d  234 (416)
                      |||||||||||||++|||||+||++|||+|+|+++|
T Consensus       169 iPAVVELCiQAGa~vPeypt~rR~kPv~~i~~~~vd  204 (204)
T PF05634_consen  169 IPAVVELCIQAGADVPEYPTKRRTKPVYRIGGRIVD  204 (204)
T ss_pred             cchHHHHHHhhCCcCCcccccccccceEeccceecC
Confidence            999999999999999999999999999999999886

>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins

Probab=100.00  E-value=1.5e-61  Score=449.59  Aligned_cols=179  Identities=38%  Similarity=0.670  Sum_probs=151.8

Q ss_pred             CCCCCCCCCcccCCccccccceeecccccccchhhhhhccccccccchhhhhhhccccccccCCcccccchhHHHHHHHH
Q 014882          210 GVDIEKYPTKRRTKPVYSVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRTLA  289 (416)
Q Consensus       210 GvdipeyptkRr~~Pi~~i~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eLi~vA~evl~  289 (416)
                      -+|+|.-..|+.+||-.++-+.+.-.+.+.-  +. +...+.-.+...+              +.+..++|++||++||+
T Consensus        18 ~~d~P~~~~k~ekKp~p~p~k~l~~~are~~--k~-~~~~p~r~l~pP~--------------NGllV~~LvpvA~ev~~   80 (204)
T PF05634_consen   18 NADLPRPLPKSEKKPYPTPIKELIRRAREER--KA-RQGQPERPLYPPK--------------NGLLVKELVPVAYEVLE   80 (204)
T ss_pred             cccCCCcCCccccCCCCccHHHHHHHHHHHH--HH-hhcCCCCCCCCCc--------------cCccHHHHHHHHHHHHH
Confidence            3689888889999998888777664444211  11 1111111111111              22457899999999999


Q ss_pred             HHHHHHHHHHHHhhheeecccCCCCCeeecCCCcccccccCcccccccCcccceecccCcccCCCceeeecCCCCCcccc
Q 014882          290 SWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPALEN  369 (416)
Q Consensus       290 Aw~~L~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~C~g~k~q~R~g~H~W~~a~vdDvv~P~~vwHl~d~~g~~l~h  369 (416)
                      ||+.|++||+|||++|||++|+||||||||++||++|||+||||++|||+|+||+|+|||||+|+|||||+|++|++|.|
T Consensus        81 A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~a~vdDvl~P~~~~Hl~D~~g~~i~h  160 (204)
T PF05634_consen   81 AWETLISGVKKLMKVYPVKACGYCPEVHVGPVGHKIRTCGGFKHQSRNGQHEWQKATVDDVLPPVEVWHLRDRFGPRIKH  160 (204)
T ss_pred             HHHHHHHHHHHHheeeeeeecCCCCCeEECCCcccccccCCCCccccCCcccceecccccccCCceeEEecCCCCCcccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhhcCCCchhhhhhhhcCCCCCCcCccccccccCC
Q 014882          370 TLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLDVVP  406 (416)
Q Consensus       370 e~R~~ygr~PAVVELCiQAGa~vP~~Y~s~mr~d~~~  406 (416)
                      |+|||||||||||||||||||++|+ |++|||.+-++
T Consensus       161 e~R~~y~riPAVVELCiQAGa~vPe-ypt~rR~kPv~  196 (204)
T PF05634_consen  161 EERFYYGRIPAVVELCIQAGADVPE-YPTKRRTKPVY  196 (204)
T ss_pred             ccccccCccchHHHHHHhhCCcCCc-ccccccccceE
Confidence            9999999999999999999999996 99999988654

>PLN00111 accumulation of photosystem one; Provisional

Probab=100.00  E-value=1.2e-54  Score=433.09  Aligned_cols=174  Identities=25%  Similarity=0.425  Sum_probs=146.4

Q ss_pred             CCCCCCCCCcccCCc--cccccceeecccccccchhhhhhccccccccchhhhhhhccccccccCCcccccchhHHHHHH
Q 014882          210 GVDIEKYPTKRRTKP--VYSVEGRIVDFESVVENDEMEKHVLDSYLGAKIDEMERSSKCERMDQSNDVEGANLREVSIRT  287 (416)
Q Consensus       210 GvdipeyptkRr~~P--i~~i~~r~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eLi~vA~ev  287 (416)
                      -+|+|.+.+|+-.||  +-++..++-.++....    ....... .+ +...             +.+...+|++||++|
T Consensus        40 ~~d~pr~~~k~ekkp~~~Pm~~l~~~aR~~~~~----~~~~~~~-~l-~pP~-------------NGllV~~LvpvA~ev  100 (399)
T PLN00111         40 NADLPRPYSKREKKPYPRPMKLLRREAREKKKL----RKLQPER-PL-DPPK-------------NGLLVKRLVPVAHEV  100 (399)
T ss_pred             ccccCCCCCchhcCCCCccHHHHHHHHHHHhhh----hhcCCCc-cC-CCCc-------------cCccccccHHHHHHH
Confidence            468888888777766  5566655443333111    1111111 22 2222             224578999999999


Q ss_pred             HHHHHHHHHHHHHHhhheeecccCCCCCeeecCCCcccccccCcccccccCcccceecccCcccCCCceeeecCCCCCcc
Q 014882          288 LASWFEMISGAKEMMEKYTVWTCGYCPEVQVGPKGHKVRMCKASKHQSRDGMHAWQEATMDDLVGPNYVWHVQDLNGPAL  367 (416)
Q Consensus       288 l~Aw~~L~~Gv~kLm~vypV~~C~yC~EVHVG~~GHkir~C~g~k~q~R~g~H~W~~a~vdDvv~P~~vwHl~d~~g~~l  367 (416)
                      |+||+.|++||+|||++|||++|+||+|||||++||+||||+|+|||+|||+|+|++|+|||||+|+|+|||+|++|++|
T Consensus       101 ~~A~~~L~~Gv~kLm~v~pV~~C~~C~EVHVG~~GH~irtC~g~k~~~R~g~H~W~~g~v~Dvl~P~e~~Hl~D~~g~~i  180 (399)
T PLN00111        101 YKARKLLISGVSKLLKVVPVHACKFCSEVHVGKVGHLIRTCRGPGSGARNGLHEWIPGSVEDVLVPVESYHLYDRFGKRI  180 (399)
T ss_pred             HHHHHHHHHHHHHhheEEeeeecCcCCceeECCCCccccccCCcccccccCccccccccccceeccceeeEeccCCCccc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccchhhhcCCCchhhhhhhhcCCCCCCcCccccccc
Q 014882          368 ENTLKRYYGKAPAVVELCVHGGAPVPDQYRSMMRLD  403 (416)
Q Consensus       368 ~he~R~~ygr~PAVVELCiQAGa~vP~~Y~s~mr~d  403 (416)
                      .|++||+||||||||||||||||++|+ |++..|..
T Consensus       181 ~h~~Rf~y~riPAVvELCiQAGa~vPe-yp~~Rr~~  215 (399)
T PLN00111        181 KHDERFDVPRIPAIVELCIQAGVDIPE-YPTKRRTK  215 (399)
T ss_pred             ccccccccCcccHHHHHHHHcCCCCCc-cccccccc
Confidence            999999999999999999999999998 99988875

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00